Psyllid ID: psy7829

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-
Protein Sequence
MTTKLIEKTTTNLVYRPGYSQVYTEGDIQNEDDFCRKDMDEFPEGHWVIPPPDNLNHFKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDPVDENLFTLMDKDSDELFSERVWELKQDPLYTTEKWIPQPPGYTTPGEITTRDKYGRLVHGSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIREF
Secondary Structure (PSIPRED)
ccccccccccccEEEEccccccccccccccHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHcccccccccccEEEEEccccccccccccccEEEEccccccccHHHHHHHccccEEEEEEEcccccEEEEEEEEcccccEEEEEEccEEEccccccccccccccccccccccHHHHccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHcccccEEcccEEEEcccccccccEEEEccccccccHHHHHcHHHcccEEEEccccccccHHHHHHHHHHHHHHcccccccccccEEEcEEc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccEEEcccccEEEcccccccHHHHHHHcHHHcccccEccccccHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHccHHHcccccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHccHHHccEEEEEEccEEccccHHHHHHEEEEEEEEEEEccccccEEEEEEEEcccccEEEEccccEEEEEcccHHHHHcccccccccccccHHHHHcccHHcccccccEEEccccccccccccccccccccccEEEEccccEEEEEccccccccccHHHHHHHHHHHHHHHcccccEEEccccHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHcccHHHHHcccEEEHHHHHHHHHHHccccccHcEcccccHHHHHHHHHHccccccEEcHHHHHHHHHHHHHHHHHHcHHHHHcccEEEEEEc
Coil and Loop (DISEMBL)
mttkliektttnlvyrpgysqvytegdiqneddfcrkdmdefpeghwvipppdnlnhfknegtcQTDLVNHLRDIGKIRTERVAQAFYkvdrgnfaneepyqdvsaslgyagvmnapnQIADAAENLKLHlvdgakvldlgsgsgyqTCVFAHmvgptgkvigvehIPELIEASLRNISKGNKDLLDSGRVRIVEAdaregylpeapydviyyggcvsevpSRVLNQLKkggrilapigpmddfqkltqidrfhdntlqktdLFEVAYDAIMRKALQMDIhkfqmdpvdenlftlmdkdsdELFSERVWElkqdplyttekwipqppgyttpgeittrdkygrlvhgsapdngpsseRSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLvgptghvtgLEHMMDIAIESIANISTNHIDLIANETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLvgptghvtgLEHMMDIAIESIANISTNHIDLIANETIEIIREF
Flexible Loop (DISEMBL)
mttkliektttnlvyrpgysqvytegDIQNEDDFCRKDMDEFPEGHWVIPPPDNLNHFKNEGTCQTDLVNHLRDIGKIRTERVAQAFYkvdrgnfaneePYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKgnkdlldsgrVRIVEAdaregylpeapYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDPVDENLFTLMDKDSDELFSERVWELkqdplyttekwipqppgyTTPGEITTRDKYGRLVHGSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIREF
Low Complexity Region (SEG)
MTTKLIEKTTTNLVYRPGYSQVYTEGDIQNEDDFCRKDMDEFPEGHWVIPPPDNLNHFKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDPVDENLFTLMDKDSDELFSERVWELKQDPLYTTEKWIPQPPGYTTPGEITTRDKYGRLVHGSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIREF
Disordered region (IsUnstruct)
********TTTNLVYRPGYSQVYTEGDIQNEDDFCRKDMDEFPEGHWVIPPPDNLNHFKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDPVDENLFTLMDKDSDELFSERVWELKQDPLYTTEKWIPQPPGYTT***I************************IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEII***
Disordered Region (DISOPRED)
********TTTNLVYRPGYS**********************************************DLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDP********************VWELKQDPLYTTEKWIPQPPGYTTPGEITTRDKYGRLVHGSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIREF
Disordered Region (DISEMBL)
MTTKLIEKTTTNLVYRPGYSQVYTEGDIQNEDDFCRKDMDEFPEGHWVIPPPDNLNHFKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDPVDENLFTLMDKDSDELFSERVWELKQDPLYTTEKWIPQPPGYTTPGEITTRDKYGRLVHGSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIREF
Disordered Region (DISPRO)
*TTKLIEKTTTNLVYRPGYSQVYTEGDIQNEDDFCRKDMDEFPEGHWVIPPPDNLNHFKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDPVDENLFTLMDKDSDELFSERVWELKQDPLYTTEKWIPQPPGYTTPGEITTRDKYGRLVHGSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIREF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTTKLIEKTTTNLVYRPGYSQVYTEGDIQNEDDFCRKDMDEFPEGHWVIPPPDNLNHFKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDPVDENLFTLMDKDSDELFSERVWELKQDPLYTTEKWIPQPPGYTTPGEITTRDKYGRLVHGSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIREF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	511	2.2.26 [Sep-21-2011]
Q92047	228	Protein-L-isoaspartate(D-	yes	N/A	0.422	0.947	0.422	7e-46
P15246	227	Protein-L-isoaspartate(D-	yes	N/A	0.422	0.951	0.418	4e-44
P80895	227	Protein-L-isoaspartate(D-	yes	N/A	0.422	0.951	0.418	5e-44
P23506	227	Protein-L-isoaspartate(D-	yes	N/A	0.422	0.951	0.418	7e-44
P22061	227	Protein-L-isoaspartate(D-	no	N/A	0.422	0.951	0.418	2e-43
P22062	227	Protein-L-isoaspartate(D-	yes	N/A	0.422	0.951	0.413	2e-43
Q4R5H0	227	Protein-L-isoaspartate(D-	N/A	N/A	0.422	0.951	0.418	2e-43
Q5RA89	227	Protein-L-isoaspartate(D-	no	N/A	0.422	0.951	0.418	2e-43
Q5F3N1	228	Protein-L-isoaspartate(D-	no	N/A	0.422	0.947	0.395	7e-43
Q27873	225	Protein-L-isoaspartate O-	yes	N/A	0.393	0.893	0.399	4e-40

>sp|Q92047|PIMT_DANRE Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Danio rerio GN=pcmt PE=2 SV=3

 Score =  185 bits (470), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 93/220 (42%), Positives = 133/220 (60%)

Query: 58  FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAP 117
           +K+ G    +LVN+LR  G I+++RV +     DR +F+   PY D   S+GY   ++AP
Sbjct: 3   WKSGGASHAELVNNLRKNGIIKSDRVYEVMLATDRSHFSRCNPYMDSPQSIGYQATISAP 62

Query: 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
           +  A A E L  HL +GAK LD+GSGSG  +  F+ MVGPTGKVIG++HI EL+E S+ N
Sbjct: 63  HMHAYALELLHDHLYEGAKALDVGSGSGILSVCFSRMVGPTGKVIGIDHIKELVEDSIAN 122

Query: 178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
           + K +  L+ SGR++++  D R G+  EAPYD I+ G     VP  +L+QLK GGR++ P
Sbjct: 123 VKKDDPSLITSGRIKLIVGDGRMGFTEEAPYDAIHVGAAAPTVPQALLDQLKPGGRLILP 182

Query: 238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQ 277
           +GP    Q L Q D+  D + +   L  V Y  +  K  Q
Sbjct: 183 VGPAGGNQMLEQYDKLEDGSTKMKPLMGVIYVPLTDKDKQ 222

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.
Danio rerio (taxid: 7955)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 7EC: 7

>sp|P15246|PIMT_BOVIN Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Bos taurus GN=PCMT1 PE=1 SV=2

 Score =  179 bits (454), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 92/220 (41%), Positives = 134/220 (60%)

Query: 58  FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAP 117
           +K+ G   ++L+++LR  G I+T++V +     DR ++A   PY D   S+G+   ++AP
Sbjct: 3   WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 62

Query: 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
           +  A A E L   L +GAK LD+GSGSG  T  FA MVGP+GKVIG++HI EL++ S+ N
Sbjct: 63  HMHAYALELLFDQLNEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINN 122

Query: 178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
           + K +  LL SGRV++V  D R GY  EAPYD I+ G     VP  +++QLK GGR++ P
Sbjct: 123 VRKDDPMLLSSGRVQLVVGDGRMGYAAEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 182

Query: 238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQ 277
           +GP    Q L Q D+  D +++   L  V Y  +  K  Q
Sbjct: 183 VGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQ 222

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P80895|PIMT_PIG Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Sus scrofa GN=PCMT1 PE=1 SV=3

 Score =  179 bits (454), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 92/220 (41%), Positives = 134/220 (60%)

Query: 58  FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAP 117
           +K+ G   ++L+++LR  G I+T++V +     DR ++A   PY D   S+G+   ++AP
Sbjct: 3   WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 62

Query: 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
           +  A A E L   L +GAK LD+GSGSG  T  FA MVGP+GKVIG++HI EL++ S+ N
Sbjct: 63  HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINN 122

Query: 178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
           + K +  LL SGRV++V  D R GY  EAPYD I+ G     VP  +++QLK GGR++ P
Sbjct: 123 VRKDDPMLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 182

Query: 238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQ 277
           +GP    Q L Q D+  D +++   L  V Y  +  K  Q
Sbjct: 183 VGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQ 222

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P23506|PIMT_MOUSE Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Mus musculus GN=Pcmt1 PE=1 SV=3

 Score =  178 bits (452), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 92/220 (41%), Positives = 133/220 (60%)

Query: 58  FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAP 117
           +K+ G   ++L+++LR  G I+T++V +     DR ++A   PY D   S+G+   ++AP
Sbjct: 3   WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKSNPYMDSPQSIGFQATISAP 62

Query: 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
           +  A A E L   L +GAK LD+GSGSG  T  FA MVG +GKVIG++HI EL++ S+ N
Sbjct: 63  HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGNSGKVIGIDHIKELVDDSITN 122

Query: 178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
           + K +  LL SGRVR+V  D R GY  EAPYD I+ G     VP  +++QLK GGR++ P
Sbjct: 123 VKKDDPMLLSSGRVRLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 182

Query: 238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQ 277
           +GP    Q L Q D+  D +++   L  V Y  +  K  Q
Sbjct: 183 VGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQ 222

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P22061|PIMT_HUMAN Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Homo sapiens GN=PCMT1 PE=1 SV=4

 Score =  177 bits (449), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 92/220 (41%), Positives = 133/220 (60%)

Query: 58  FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAP 117
           +K+ G   ++L+++LR  G I+T++V +     DR ++A   PY D   S+G+   ++AP
Sbjct: 3   WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 62

Query: 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
           +  A A E L   L +GAK LD+GSGSG  T  FA MVG TGKVIG++HI EL++ S+ N
Sbjct: 63  HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNN 122

Query: 178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
           + K +  LL SGRV++V  D R GY  EAPYD I+ G     VP  +++QLK GGR++ P
Sbjct: 123 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 182

Query: 238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQ 277
           +GP    Q L Q D+  D +++   L  V Y  +  K  Q
Sbjct: 183 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQ 222

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P22062|PIMT_RAT Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Rattus norvegicus GN=Pcmt1 PE=1 SV=2

 Score =  177 bits (449), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 91/220 (41%), Positives = 133/220 (60%)

Query: 58  FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAP 117
           +K+ G   ++L+++LR  G I+T++V +     DR ++A   PY D   S+G+   ++AP
Sbjct: 3   WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKSNPYMDSPQSIGFQATISAP 62

Query: 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
           +  A A E L   L +GAK LD+GSGSG  T  FA MVG +GKVIG++HI EL++ S+ N
Sbjct: 63  HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGHSGKVIGIDHIKELVDDSITN 122

Query: 178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
           + K +  LL SGRVR+V  D R G+  EAPYD I+ G     VP  +++QLK GGR++ P
Sbjct: 123 VKKDDPMLLSSGRVRLVVGDGRMGFAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 182

Query: 238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQ 277
           +GP    Q L Q D+  D +++   L  V Y  +  K  Q
Sbjct: 183 VGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQ 222

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q4R5H0|PIMT_MACFA Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Macaca fascicularis GN=PCMT1 PE=2 SV=3

 Score =  177 bits (448), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 92/220 (41%), Positives = 133/220 (60%)

Query: 58  FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAP 117
           +K+ G   ++L+++LR  G I+T++V +     DR ++A   PY D   S+G+   ++AP
Sbjct: 3   WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAECNPYMDSPQSIGFQATISAP 62

Query: 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
           +  A A E L   L +GAK LD+GSGSG  T  FA MVG TGKVIG++HI EL++ S+ N
Sbjct: 63  HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINN 122

Query: 178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
           + K +  LL SGRV++V  D R GY  EAPYD I+ G     VP  +++QLK GGR++ P
Sbjct: 123 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 182

Query: 238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQ 277
           +GP    Q L Q D+  D +++   L  V Y  +  K  Q
Sbjct: 183 VGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQ 222

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Macaca fascicularis (taxid: 9541)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q5RA89|PIMT_PONAB Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Pongo abelii GN=PCMT1 PE=2 SV=3

 Score =  177 bits (448), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 92/220 (41%), Positives = 133/220 (60%)

Query: 58  FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAP 117
           +K+ G   ++L+++LR  G I+T++V +     DR ++A   PY D   S+G+   ++AP
Sbjct: 3   WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 62

Query: 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
           +  A A E L   L +GAK LD+GSGSG  T  FA MVG TGKVIG++HI EL++ S+ N
Sbjct: 63  HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINN 122

Query: 178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
           + K +  LL SGRV++V  D R GY  EAPYD I+ G     VP  +++QLK GGR++ P
Sbjct: 123 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 182

Query: 238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQ 277
           +GP    Q L Q D+  D +++   L  V Y  +  K  Q
Sbjct: 183 VGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQ 222

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q5F3N1|PIMT_CHICK Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Gallus gallus GN=PCMT1 PE=2 SV=3

 Score =  175 bits (444), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 87/220 (39%), Positives = 133/220 (60%)

Query: 58  FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAP 117
           +K+ G   ++L+++LR  G I++++V +     DR ++A   PY D   S+G+   ++AP
Sbjct: 3   WKSGGASHSELIHNLRKNGIIKSDKVFEVMLATDRCHYAKYNPYMDSPQSIGFQATISAP 62

Query: 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
           +  A A E L   L +GAK LD+GSGSG  T  F+ MVGP G+V+G++HI EL++ S+ N
Sbjct: 63  HMHAYALELLSDQLHEGAKALDVGSGSGILTACFSRMVGPKGQVVGIDHIKELVDDSINN 122

Query: 178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
           + K +  LL SGRV+++  D R GY  EAPYD I+ G     VP  +++QLK GGR++ P
Sbjct: 123 VKKDDPTLLSSGRVKLIVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 182

Query: 238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQ 277
           +GP    Q L Q D+  D +++   L  V Y  +  K  Q
Sbjct: 183 VGPAGGNQMLEQYDKLEDGSVKMKPLMGVIYVPLTDKEKQ 222

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q27873|PIMT_CAEEL Protein-L-isoaspartate O-methyltransferase OS=Caenorhabditis elegans GN=pcm-1 PE=2 SV=1

 Score =  166 bits (420), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 81/203 (39%), Positives = 126/203 (62%)

Query: 58  FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAP 117
           +++ G+  ++L+++LR+     ++R   A   VDRG+FA   PY+D    +GY   ++AP
Sbjct: 3   WRSSGSTNSELIDNLRNNRVFASQRAYDAMKSVDRGDFAPRAPYEDAPQRIGYNATVSAP 62

Query: 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
           +  A A + L+ HLV GAK LD+GSGSGY T   A MVG  G V+G+EH+P+L+E S +N
Sbjct: 63  HMHAAALDYLQNHLVAGAKALDVGSGSGYLTVCMAMMVGRNGTVVGIEHMPQLVELSEKN 122

Query: 178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
           I K + + L+ G V I+E D R+G+  +APY+ I+ G     VP  + +QL +GGR++ P
Sbjct: 123 IRKHHSEQLERGNVIIIEGDGRQGFAEKAPYNAIHVGAASKGVPKALTDQLAEGGRMMIP 182

Query: 238 IGPMDDFQKLTQIDRFHDNTLQK 260
           +  +D  Q   QID+ +    QK
Sbjct: 183 VEQVDGNQVFMQIDKINGKIEQK 205

Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. This enzyme does not act on D-aspartyl residues.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	511
241566262	277	protein-L-isoaspartate(D-aspartate) O-me	0.430	0.794	0.445	2e-49
326919840	248	PREDICTED: protein-L-isoaspartate(D-aspa	0.442	0.911	0.442	2e-46
224050699	245	PREDICTED: protein-L-isoaspartate(D-aspa	0.430	0.897	0.440	4e-46
427781597	232	Putative protein-l-isoaspartated-asparta	0.430	0.948	0.427	6e-46
291222791	257	PREDICTED: Protein-L-isoaspartate (D-asp	0.430	0.856	0.418	7e-46
410898491	249	PREDICTED: protein-L-isoaspartate(D-aspa	0.412	0.847	0.431	3e-45
260830152	230	hypothetical protein BRAFLDRAFT_284774 [	0.430	0.956	0.413	4e-45
226443368	249	Protein-L-isoaspartateD-aspartate O-meth	0.430	0.883	0.431	9e-45
322791057	436	hypothetical protein SINV_06781 [Solenop	0.702	0.823	0.315	9e-45
318102097	249	l-isoaspartate(d-aspartate) o-methyltran	0.409	0.839	0.440	3e-44

>gi|241566262|ref|XP_002402129.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase, putative [Ixodes scapularis] gi|215499989|gb|EEC09483.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase, putative [Ixodes scapularis]

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 98/220 (44%), Positives = 140/220 (63%)

Query: 58  FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAP 117
           +++ G    +LV +L+  G IR+ +V Q   +VDRG++    PY D    +GYA  ++AP
Sbjct: 23  WRSHGKTNLELVRNLKHNGIIRSAKVEQVMSQVDRGHYVKHNPYMDSPQGIGYAVTISAP 82

Query: 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
           +  A A E+LK HL +GAK LD+GSGSGY T   A MVG TG+ IG++HIPEL++ S+ N
Sbjct: 83  HMHAQALESLKDHLYEGAKALDVGSGSGYLTVCMALMVGETGRTIGIDHIPELVDQSIAN 142

Query: 178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
           I KG+  LLDS R+R++  D R GY  EAPYD I+ G    E+P +++ QLK GGR++ P
Sbjct: 143 IHKGHPALLDSKRLRMIVGDGRVGYPEEAPYDAIHVGAAAPELPKQLIEQLKPGGRLICP 202

Query: 238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQ 277
           +GP    Q L Q+D+  D T+++T L  V Y  +  K  Q
Sbjct: 203 VGPAGQSQTLEQVDKLQDGTVKRTSLMGVVYVPLTDKEAQ 242

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326919840|ref|XP_003206185.1| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like [Meleagris gallopavo] gi|363734030|ref|XP_420939.3| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase [Gallus gallus]

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 100/226 (44%), Positives = 135/226 (59%)

Query: 58  FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAP 117
           + + G    +LVN+L   G I+++RV       DRG++    PY D   S+GY   ++AP
Sbjct: 23  WTSSGKTHPELVNNLYKKGIIKSQRVFDVLLATDRGHYIKYFPYMDSPQSIGYKATISAP 82

Query: 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
           +  A A E LK  LV+GAK LD+GSGSGY T  FA MVGPTGK +GVEHI EL+  S+RN
Sbjct: 83  HMHAHALELLKDQLVEGAKALDVGSGSGYLTACFARMVGPTGKAVGVEHIKELVNESIRN 142

Query: 178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
           + + +  LL SGRV++V  D R+GY  EAPYD I+ G     VP  +LN+LK GGR++ P
Sbjct: 143 VKEDDPTLLSSGRVKLVVGDGRQGYPEEAPYDAIHVGAAAPTVPQELLNELKPGGRLILP 202

Query: 238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKF 283
           +GP    Q L Q D+  D  + +T L  V Y  +  K  Q    +F
Sbjct: 203 VGPEGANQVLMQYDKTSDGQIIETQLMGVIYVPLTDKEKQWPRDEF 248

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|224050699|ref|XP_002195928.1| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like [Taeniopygia guttata]

 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 97/220 (44%), Positives = 133/220 (60%)

Query: 58  FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAP 117
           + + G    +LVN+L   G I+++RV       DRG++    PY D   S+GY   ++AP
Sbjct: 23  WTSSGKTHAELVNNLYKKGIIKSQRVFDVLLATDRGHYIKYFPYMDSPQSIGYKATISAP 82

Query: 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
           +  A A E LK  LV+GAK LD+GSGSGY T  FA M+GPTGK +GVEHI EL+  S+RN
Sbjct: 83  HMHAHALELLKDQLVEGAKALDVGSGSGYLTACFARMIGPTGKAVGVEHIKELVHESIRN 142

Query: 178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
           + + +  LL SGRV++V  D R+GY  EAPYD I+ G   + VP  +L +LK GGR++ P
Sbjct: 143 VQEDDPTLLSSGRVKLVVGDGRQGYPEEAPYDAIHVGAAAATVPKELLKELKPGGRLIVP 202

Query: 238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQ 277
           +GP    Q L Q D+  D  + +T L  V Y  +  K  Q
Sbjct: 203 VGPEGANQVLMQYDKTSDGNIIETQLMGVIYVPLTDKEKQ 242

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|427781597|gb|JAA56250.1| Putative protein-l-isoaspartated-aspartate o-methyltransferase [Rhipicephalus pulchellus]

 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 94/220 (42%), Positives = 133/220 (60%)

Query: 58  FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAP 117
           +++ G    DLV +L+  G IRT+RV      VDRGN+    PY D    +GYA  ++AP
Sbjct: 3   WRSHGKNNLDLVRNLKRNGIIRTQRVEDVMSSVDRGNYCPHNPYMDSPQGIGYAVTISAP 62

Query: 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
           +  A A E+LK HL +GA+ LD+GSGSGY T     MVG TG  +G++HIPEL+  S+ N
Sbjct: 63  HMHAQALESLKDHLKEGARALDVGSGSGYLTACMGLMVGETGLAVGIDHIPELVNESIAN 122

Query: 178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
           I +    LL S RV+++  D REGY   APYD I+ G    ++P +++ QLK GGR++ P
Sbjct: 123 IERDQPQLLKSKRVKMIVGDGREGYPEHAPYDAIHVGAAAPDMPKKLVEQLKPGGRLICP 182

Query: 238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQ 277
           +GP    Q L Q+D+  D T+++T L  V Y  +  K  Q
Sbjct: 183 VGPAGASQTLEQVDKLEDGTVRRTSLMGVVYVPLTDKDSQ 222

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291222791|ref|XP_002731398.1| PREDICTED: Protein-L-isoaspartate (D-aspartate) O-methyltransferase-like [Saccoglossus kowalevskii]

 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 92/220 (41%), Positives = 139/220 (63%)

Query: 58  FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAP 117
           +K+ GT   +L+N LR  G I+ + V  A   VDRG ++   PY D   S+GYA  ++AP
Sbjct: 25  WKSSGTNHQELINRLRQNGIIKHDNVYDAMMAVDRGKYSKYNPYMDSPQSIGYAATISAP 84

Query: 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
           +  A A E L  HL +G+K LD+GSG+GY T   A M G TGK IG++HIPE++E S +N
Sbjct: 85  HMHAHALELLSNHLHEGSKALDVGSGTGYLTVCMALMCGETGKAIGIDHIPEIVEESKKN 144

Query: 178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
           +++ +  L++SGR++++  D R+G+L EAP+D I+ G    +VP  +L+QLK GGR++ P
Sbjct: 145 VNRTHSQLVESGRLKLLAGDGRKGFLEEAPFDAIHVGAAAEQVPQALLDQLKPGGRLIIP 204

Query: 238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQ 277
           +GP  + Q L Q D+  D ++ K +L  V Y  +  K  Q
Sbjct: 205 VGPQGNNQMLEQHDKLDDGSIVKKNLMGVIYVPLTSKEKQ 244

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|410898491|ref|XP_003962731.1| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like [Takifugu rubripes]

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 91/211 (43%), Positives = 127/211 (60%)

Query: 58  FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAP 117
           + + G+   +L+  LRD G IR++RV  A    DRG ++ + PY D    +GY   ++AP
Sbjct: 24  WMSSGSTHAELITRLRDHGVIRSDRVFNAMLATDRGIYSADHPYADSPQPIGYRATISAP 83

Query: 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
           +  A A E L + L +GA  LD+GSGSGY T  FA M GPTG+V+GVEHI +L+E S++N
Sbjct: 84  HMHAHALELLSVKLTEGAAALDVGSGSGYLTACFARMTGPTGRVVGVEHISQLVEMSIKN 143

Query: 178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
           +   + +LL SGR+R+V  D R+G+   APYD I+ G     VP  +L QLK GGR++ P
Sbjct: 144 VQADDPELLTSGRIRLVVGDGRQGFPEGAPYDAIHVGAAAPSVPKSLLAQLKPGGRLILP 203

Query: 238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAY 268
           +GP    Q L Q D+  D T     L  V Y
Sbjct: 204 VGPTSGSQMLMQYDQQRDGTFITKALMGVMY 234

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260830152|ref|XP_002610025.1| hypothetical protein BRAFLDRAFT_284774 [Branchiostoma floridae] gi|229295388|gb|EEN66035.1| hypothetical protein BRAFLDRAFT_284774 [Branchiostoma floridae]

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 91/220 (41%), Positives = 139/220 (63%)

Query: 58  FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAP 117
           +K+ G    DL+  L++ G I+T+RV  A  +VDRGN+    PY D   S+GY   ++AP
Sbjct: 3   WKSHGKNNADLIRQLKNNGIIKTDRVFDAMKQVDRGNYCRFSPYMDSPQSIGYGVTISAP 62

Query: 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
           +  A A E LK HL +G++ LD+GSGSGY T   A MVGPTGK +G++HI EL+  S+ N
Sbjct: 63  HMHAHALEILKDHLQEGSRALDVGSGSGYLTACMALMVGPTGKAVGIDHIDELVNMSIAN 122

Query: 178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
           ++K +  LL +G+++++  D REG   +AP+D I+ G    ++P  +++QLK GGR++ P
Sbjct: 123 VNKEHPQLLKTGQMKLILGDGREGSPEDAPFDAIHVGAAAPQIPQALIDQLKPGGRLILP 182

Query: 238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQ 277
           +GP    Q L Q+D+  D T++K +L  V Y  +  K  Q
Sbjct: 183 VGPAGGNQNLEQVDKLPDGTVRKKNLMGVIYVPLTSKEKQ 222

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|226443368|ref|NP_001140111.1| Protein-L-isoaspartateD-aspartate O-methyltransferase precursor [Salmo salar] gi|221222218|gb|ACM09770.1| Protein-L-isoaspartateD-aspartate O-methyltransferase [Salmo salar]

 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 95/220 (43%), Positives = 134/220 (60%)

Query: 58  FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAP 117
           + + G   ++L++ LR+ G IR++RV  A    DRG ++ + PY D   S+G+   ++AP
Sbjct: 24  WMSTGKTHSELIDRLREHGVIRSDRVFDAMLATDRGIYSRDYPYADSPQSIGFKATISAP 83

Query: 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
           +  A A E L   L+DGA  LD+GSGSGY T  FA MVGP+GKV+G+EHI EL++ S+RN
Sbjct: 84  HMHAHALEVLSDKLMDGASALDVGSGSGYLTACFARMVGPSGKVVGIEHIDELVQTSVRN 143

Query: 178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
           +   + +LL SGR+R+V  D R GY   APYD I+ G     +P  +L+QLK GGR++ P
Sbjct: 144 VQADDPELLSSGRIRLVVGDGRLGYPDGAPYDAIHVGAAAPTLPKALLDQLKPGGRLVLP 203

Query: 238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQ 277
           +GP    Q L Q DR  D T  +  L  V Y  +  K  Q
Sbjct: 204 VGPDGGSQVLEQYDRQSDGTFIRKALMGVIYVPLTDKRRQ 243

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|322791057|gb|EFZ15657.1| hypothetical protein SINV_06781 [Solenopsis invicta]

 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 127/403 (31%), Positives = 200/403 (49%), Gaps = 44/403 (10%)

Query: 62  GTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANE-EPYQDVSASLGYAGVMNAPNQI 120
           GT   ++V  L+D G + T++   A   VDR  + +E +PY D    +GY   ++AP+  
Sbjct: 7   GTTNQEMVTKLKDAGILATDKAEAAMLAVDRAKYCHEPDPYLDRPRRIGYNVTISAPHMH 66

Query: 121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISK 180
           A A   L   L DGAK LD+GSGSGY +   A MVG  G+V G+EHIPELIE S RN+ +
Sbjct: 67  AYALSILSDQLFDGAKALDVGSGSGYLSACMAFMVGSHGRVTGIEHIPELIEVSTRNVRE 126

Query: 181 GNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGP 240
            N   L   R++ V  D R G+  + PY+ I+ G     +P  +++QL  GGR++ P+  
Sbjct: 127 DNPHFLKEDRIKFVVGDGRLGHAADGPYNAIHVGAAAETLPQTLIDQLAPGGRLICPVVA 186

Query: 241 MDDFQK---LTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDPVDENLFTLMD 297
           ++ FQ+   L Q+D+  D  + K  L +V+Y  +     Q+     + D V    F +M+
Sbjct: 187 IEGFQRFQDLLQVDKSTDGAITKKKLMQVSYVPLTDPTTQLRSRVIKSDKV----FEVMN 242

Query: 298 KDSDELFSERVWELKQDPLYTTEKWIPQPPGYTTPGEITTRDKYGRLVHGSAPDNGPSSE 357
                 ++        DP   +  +I  P G            YG  +  SAP       
Sbjct: 243 SVDRGKYT--------DP---SHAYIDAPQGI----------GYGVTI--SAP------- 272

Query: 358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIAN 417
              A+ L+L    L  G + L++GSGSGYL   MA ++ P G   G++H+ ++   +  N
Sbjct: 273 HMHAYALELLEEKLINGTRALDVGSGSGYLTACMALMMRPQGLAIGIDHIPELRAMAEEN 332

Query: 418 ISTNHIDLIANETIEIIPHILDLCYLN------LHRGAKVLEI 454
           I  +H +L+++  +E++     L Y N      +H GA   E+
Sbjct: 333 IRHDHPELLSDGRVELVVGDGRLGYPNRAPYDAIHVGAAAKEM 375

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|318102097|ref|NP_001188104.1| l-isoaspartate(d-aspartate) o-methyltransferase precursor [Ictalurus punctatus] gi|308322677|gb|ADO28476.1| l-isoaspartate(d-aspartate) o-methyltransferase [Ictalurus punctatus]

 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 92/209 (44%), Positives = 128/209 (61%)

Query: 60  NEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQ 119
           + G     L++ LR+ G IR++RV +A    DRG ++ + PY+D   S+GY   ++AP+ 
Sbjct: 26  SSGKTHPQLISRLREHGVIRSDRVFEAMLATDRGIYSKDYPYEDSPQSIGYKATISAPHM 85

Query: 120 IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNIS 179
            A   E L   L +GA  LD+GSGSGY T  FA MVGPTGKV+G++HI EL++AS++N+ 
Sbjct: 86  HAHVLEILSEQLTEGASALDVGSGSGYLTACFARMVGPTGKVVGIDHIAELVQASVKNVQ 145

Query: 180 KGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIG 239
               +LL SGRV++V  D R G+   APYD I+ G     +P  +L+QLK GGR++ P+G
Sbjct: 146 ADELELLTSGRVKLVVGDGRLGFPDGAPYDAIHVGAAAPTIPKALLDQLKPGGRLVLPVG 205

Query: 240 PMDDFQKLTQIDRFHDNTLQKTDLFEVAY 268
           P    Q L Q DR  D T  K  L  V Y
Sbjct: 206 PEGGSQVLEQYDRQSDGTFVKKALMGVVY 234

Source: Ictalurus punctatus

Species: Ictalurus punctatus

Genus: Ictalurus

Family: Ictaluridae

Order: Siluriformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	511
UNIPROTKB|E1BXJ0	228	LOC423008 "Protein-L-isoaspart	0.438	0.982	0.446	1.8e-46
ZFIN|ZDB-GENE-990415-134	266	pcmt "l-isoaspartyl protein ca	0.430	0.827	0.422	1.5e-44
ZFIN|ZDB-GENE-040426-1738	249	pcmtl "l-isoaspartyl protein c	0.426	0.875	0.412	2.2e-43
UNIPROTKB|P80895	227	PCMT1 "Protein-L-isoaspartate(	0.430	0.969	0.418	4.5e-43
UNIPROTKB|G3MZZ6	228	PCMT1 "Protein-L-isoaspartate	0.430	0.964	0.418	4.5e-43
UNIPROTKB|P15246	227	PCMT1 "Protein-L-isoaspartate(	0.430	0.969	0.418	4.5e-43
MGI|MGI:97502	227	Pcmt1 "protein-L-isoaspartate	0.430	0.969	0.418	5.7e-43
UNIPROTKB|H7BY58	286	PCMT1 "Protein-L-isoaspartate	0.430	0.769	0.418	1.2e-42
UNIPROTKB|J3KP72	285	PCMT1 "Protein-L-isoaspartate	0.430	0.771	0.418	1.2e-42
UNIPROTKB|P22061	227	PCMT1 "Protein-L-isoaspartate(	0.430	0.969	0.418	1.2e-42

UNIPROTKB|E1BXJ0 LOC423008 "Protein-L-isoaspartate O-methyltransferase" [Gallus gallus (taxid:9031)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 100/224 (44%), Positives = 134/224 (59%)

Query:    60 NEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQ 119
             + G    +LVN+L   G I+++RV       DRG++    PY D   S+GY   ++AP+ 
Sbjct:     5 SSGKTHPELVNNLYKKGIIKSQRVFDVLLATDRGHYIKYFPYMDSPQSIGYKATISAPHM 64

Query:   120 IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNIS 179
              A A E LK  LV+GAK LD+GSGSGY T  FA MVGPTGK +GVEHI EL+  S+RN+ 
Sbjct:    65 HAHALELLKDQLVEGAKALDVGSGSGYLTACFARMVGPTGKAVGVEHIKELVNESIRNVK 124

Query:   180 KGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIG 239
             + +  LL SGRV++V  D R+GY  EAPYD I+ G     VP  +LN+LK GGR++ P+G
Sbjct:   125 EDDPTLLSSGRVKLVVGDGRQGYPEEAPYDAIHVGAAAPTVPQELLNELKPGGRLILPVG 184

Query:   240 PMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKF 283
             P    Q L Q D+  D  + +T L  V Y  +  K  Q    +F
Sbjct:   185 PEGANQVLMQYDKTSDGQIIETQLMGVIYVPLTDKEKQWPRDEF 228

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-990415-134 pcmt "l-isoaspartyl protein carboxyl methyltransferase" [Danio rerio (taxid:7955)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 93/220 (42%), Positives = 133/220 (60%)

Query:    58 FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAP 117
             +K+ G    +LVN+LR  G I+++RV +     DR +F+   PY D   S+GY   ++AP
Sbjct:    41 WKSGGASHAELVNNLRKNGIIKSDRVYEVMLATDRSHFSRCNPYMDSPQSIGYQATISAP 100

Query:   118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
             +  A A E L  HL +GAK LD+GSGSG  +  F+ MVGPTGKVIG++HI EL+E S+ N
Sbjct:   101 HMHAYALELLHDHLYEGAKALDVGSGSGILSVCFSRMVGPTGKVIGIDHIKELVEDSIAN 160

Query:   178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
             + K +  L+ SGR++++  D R G+  EAPYD I+ G     VP  +L+QLK GGR++ P
Sbjct:   161 VKKDDPSLITSGRIKLIVGDGRMGFTEEAPYDAIHVGAAAPTVPQALLDQLKPGGRLILP 220

Query:   238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQ 277
             +GP    Q L Q D+  D + +   L  V Y  +  K  Q
Sbjct:   221 VGPAGGNQMLEQYDKLEDGSTKMKPLMGVIYVPLTDKDKQ 260

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

ZFIN|ZDB-GENE-040426-1738 pcmtl "l-isoaspartyl protein carboxyl methyltransferase, like" [Danio rerio (taxid:7955)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 90/218 (41%), Positives = 129/218 (59%)

Query:    60 NEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQ 119
             + G    +L+  LRD G I  +RV  A    DRG ++ + PY D   S+GY   ++AP+ 
Sbjct:    26 SSGKTHVELITRLRDHGVIHNDRVFNAMLATDRGIYSRDHPYADSPQSIGYKATISAPHM 85

Query:   120 IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNIS 179
              A A E L   L +GA  LD+GSGSGY T  FA MVGP+GKV+G++HI +L+++S++N+ 
Sbjct:    86 HAHALEVLSDKLTEGASALDVGSGSGYLTACFARMVGPSGKVVGIDHIDQLVQSSVKNVQ 145

Query:   180 KGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIG 239
               + +LL +GR+++V  D R G+  EAPYD I+ G     +P  +L QLK GGR++ P+G
Sbjct:   146 ADDPELLATGRIKLVVGDGRFGFPDEAPYDAIHVGAAAPTLPKALLEQLKPGGRLVLPVG 205

Query:   240 PMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQ 277
             P    Q L Q DR  D T  +  L  V Y  +  K  Q
Sbjct:   206 PEGGSQVLEQYDRQSDGTFLRKPLMGVVYVPLTDKQHQ 243

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|P80895 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Sus scrofa (taxid:9823)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 92/220 (41%), Positives = 134/220 (60%)

Query:    58 FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAP 117
             +K+ G   ++L+++LR  G I+T++V +     DR ++A   PY D   S+G+   ++AP
Sbjct:     3 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 62

Query:   118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
             +  A A E L   L +GAK LD+GSGSG  T  FA MVGP+GKVIG++HI EL++ S+ N
Sbjct:    63 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINN 122

Query:   178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
             + K +  LL SGRV++V  D R GY  EAPYD I+ G     VP  +++QLK GGR++ P
Sbjct:   123 VRKDDPMLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 182

Query:   238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQ 277
             +GP    Q L Q D+  D +++   L  V Y  +  K  Q
Sbjct:   183 VGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQ 222

GO:0005737 "cytoplasm" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

UNIPROTKB|G3MZZ6 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Bos taurus (taxid:9913)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 92/220 (41%), Positives = 134/220 (60%)

Query:    58 FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAP 117
             +K+ G   ++L+++LR  G I+T++V +     DR ++A   PY D   S+G+   ++AP
Sbjct:     3 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 62

Query:   118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
             +  A A E L   L +GAK LD+GSGSG  T  FA MVGP+GKVIG++HI EL++ S+ N
Sbjct:    63 HMHAYALELLFDQLNEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINN 122

Query:   178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
             + K +  LL SGRV++V  D R GY  EAPYD I+ G     VP  +++QLK GGR++ P
Sbjct:   123 VRKDDPMLLSSGRVQLVVGDGRMGYAAEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 182

Query:   238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQ 277
             +GP    Q L Q D+  D +++   L  V Y  +  K  Q
Sbjct:   183 VGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQ 222

GO:0005737 "cytoplasm" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

UNIPROTKB|P15246 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Bos taurus (taxid:9913)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 92/220 (41%), Positives = 134/220 (60%)

Query:    58 FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAP 117
             +K+ G   ++L+++LR  G I+T++V +     DR ++A   PY D   S+G+   ++AP
Sbjct:     3 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 62

Query:   118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
             +  A A E L   L +GAK LD+GSGSG  T  FA MVGP+GKVIG++HI EL++ S+ N
Sbjct:    63 HMHAYALELLFDQLNEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINN 122

Query:   178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
             + K +  LL SGRV++V  D R GY  EAPYD I+ G     VP  +++QLK GGR++ P
Sbjct:   123 VRKDDPMLLSSGRVQLVVGDGRMGYAAEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 182

Query:   238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQ 277
             +GP    Q L Q D+  D +++   L  V Y  +  K  Q
Sbjct:   183 VGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQ 222

GO:0005737 "cytoplasm" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

MGI|MGI:97502 Pcmt1 "protein-L-isoaspartate (D-aspartate) O-methyltransferase 1" [Mus musculus (taxid:10090)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 92/220 (41%), Positives = 133/220 (60%)

Query:    58 FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAP 117
             +K+ G   ++L+++LR  G I+T++V +     DR ++A   PY D   S+G+   ++AP
Sbjct:     3 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKSNPYMDSPQSIGFQATISAP 62

Query:   118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
             +  A A E L   L +GAK LD+GSGSG  T  FA MVG +GKVIG++HI EL++ S+ N
Sbjct:    63 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGNSGKVIGIDHIKELVDDSITN 122

Query:   178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
             + K +  LL SGRVR+V  D R GY  EAPYD I+ G     VP  +++QLK GGR++ P
Sbjct:   123 VKKDDPMLLSSGRVRLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 182

Query:   238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQ 277
             +GP    Q L Q D+  D +++   L  V Y  +  K  Q
Sbjct:   183 VGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQ 222

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0006479 "protein methylation" evidence=IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0046498 "S-adenosylhomocysteine metabolic process" evidence=ISO

GO:0046500 "S-adenosylmethionine metabolic process" evidence=ISO

UNIPROTKB|H7BY58 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 92/220 (41%), Positives = 133/220 (60%)

Query:    58 FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAP 117
             +K+ G   ++L+++LR  G I+T++V +     DR ++A   PY D   S+G+   ++AP
Sbjct:    61 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 120

Query:   118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
             +  A A E L   L +GAK LD+GSGSG  T  FA MVG TGKVIG++HI EL++ S+ N
Sbjct:   121 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNN 180

Query:   178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
             + K +  LL SGRV++V  D R GY  EAPYD I+ G     VP  +++QLK GGR++ P
Sbjct:   181 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 240

Query:   238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQ 277
             +GP    Q L Q D+  D +++   L  V Y  +  K  Q
Sbjct:   241 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQ 280

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|J3KP72 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 92/220 (41%), Positives = 133/220 (60%)

Query:    58 FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAP 117
             +K+ G   ++L+++LR  G I+T++V +     DR ++A   PY D   S+G+   ++AP
Sbjct:    61 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 120

Query:   118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
             +  A A E L   L +GAK LD+GSGSG  T  FA MVG TGKVIG++HI EL++ S+ N
Sbjct:   121 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNN 180

Query:   178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
             + K +  LL SGRV++V  D R GY  EAPYD I+ G     VP  +++QLK GGR++ P
Sbjct:   181 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 240

Query:   238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQ 277
             +GP    Q L Q D+  D +++   L  V Y  +  K  Q
Sbjct:   241 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQ 280

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0046498 "S-adenosylhomocysteine metabolic process" evidence=IEA

GO:0046500 "S-adenosylmethionine metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|P22061 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 92/220 (41%), Positives = 133/220 (60%)

Query:    58 FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAP 117
             +K+ G   ++L+++LR  G I+T++V +     DR ++A   PY D   S+G+   ++AP
Sbjct:     3 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 62

Query:   118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
             +  A A E L   L +GAK LD+GSGSG  T  FA MVG TGKVIG++HI EL++ S+ N
Sbjct:    63 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNN 122

Query:   178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
             + K +  LL SGRV++V  D R GY  EAPYD I+ G     VP  +++QLK GGR++ P
Sbjct:   123 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 182

Query:   238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQ 277
             +GP    Q L Q D+  D +++   L  V Y  +  K  Q
Sbjct:   183 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQ 222

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=TAS

GO:0030091 "protein repair" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0006479 "protein methylation" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691
4th Layer	2.1.1.77	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	511
pfam01135	210	pfam01135, PCMT, Protein-L-isoaspartate(D-aspartat	2e-54
TIGR00080	215	TIGR00080, pimt, protein-L-isoaspartate(D-aspartat	8e-43
COG2518	209	COG2518, Pcm, Protein-L-isoaspartate carboxylmethy	1e-35
PRK13942	212	PRK13942, PRK13942, protein-L-isoaspartate O-methy	5e-34
PRK00312	212	PRK00312, pcm, protein-L-isoaspartate O-methyltran	5e-26
PRK13944	205	PRK13944, PRK13944, protein-L-isoaspartate O-methy	2e-21
TIGR04364	394	TIGR04364, methyltran_FxLD, methyltransferase, FxL	9e-21
PRK13943	322	PRK13943, PRK13943, protein-L-isoaspartate O-methy	3e-17
pfam01135	210	pfam01135, PCMT, Protein-L-isoaspartate(D-aspartat	3e-14
pfam01135	210	pfam01135, PCMT, Protein-L-isoaspartate(D-aspartat	1e-13
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	3e-13
COG2242	187	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme	7e-11
TIGR00080	215	TIGR00080, pimt, protein-L-isoaspartate(D-aspartat	3e-10
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	3e-10
TIGR00080	215	TIGR00080, pimt, protein-L-isoaspartate(D-aspartat	4e-10
PRK00377	198	PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr	5e-10
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	6e-09
TIGR04188	363	TIGR04188, methyltr_grsp, methyltransferase, ATP-g	1e-08
PRK11873	272	PRK11873, arsM, arsenite S-adenosylmethyltransfera	2e-08
COG2519	256	COG2519, GCD14, tRNA(1-methyladenosine) methyltran	2e-08
COG2518	209	COG2518, Pcm, Protein-L-isoaspartate carboxylmethy	5e-08
COG2518	209	COG2518, Pcm, Protein-L-isoaspartate carboxylmethy	5e-08
PRK13942	212	PRK13942, PRK13942, protein-L-isoaspartate O-methy	9e-08
PRK13942	212	PRK13942, PRK13942, protein-L-isoaspartate O-methy	9e-08
TIGR02469	124	TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer	3e-07
PRK00312	212	PRK00312, pcm, protein-L-isoaspartate O-methyltran	8e-07
PRK00312	212	PRK00312, pcm, protein-L-isoaspartate O-methyltran	1e-06
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	2e-06
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	3e-06
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	3e-06
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	4e-06
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	5e-06
COG2519	256	COG2519, GCD14, tRNA(1-methyladenosine) methyltran	6e-06
TIGR02752	231	TIGR02752, MenG_heptapren, demethylmenaquinone met	8e-06
TIGR02752	231	TIGR02752, MenG_heptapren, demethylmenaquinone met	8e-06
TIGR04364	394	TIGR04364, methyltran_FxLD, methyltransferase, FxL	1e-05
COG2519	256	COG2519, GCD14, tRNA(1-methyladenosine) methyltran	1e-05
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	2e-05
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	2e-05
TIGR04364	394	TIGR04364, methyltran_FxLD, methyltransferase, FxL	3e-05
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	4e-05
PRK13943	322	PRK13943, PRK13943, protein-L-isoaspartate O-methy	1e-04
PRK13943	322	PRK13943, PRK13943, protein-L-isoaspartate O-methy	1e-04
pfam01209	233	pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf	1e-04
pfam01269	229	pfam01269, Fibrillarin, Fibrillarin	1e-04
TIGR03534	251	TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met	2e-04
PRK00216	239	PRK00216, ubiE, ubiquinone/menaquinone biosynthesi	3e-04
PRK00216	239	PRK00216, ubiE, ubiquinone/menaquinone biosynthesi	3e-04
COG2263	198	COG2263, COG2263, Predicted RNA methylase [Transla	5e-04
COG4122	219	COG4122, COG4122, Predicted O-methyltransferase [G	6e-04
PRK13944	205	PRK13944, PRK13944, protein-L-isoaspartate O-methy	0.001
PRK11873	272	PRK11873, arsM, arsenite S-adenosylmethyltransfera	0.001
PRK11873	272	PRK11873, arsM, arsenite S-adenosylmethyltransfera	0.001
TIGR02469	124	TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer	0.001
TIGR02469	124	TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer	0.001
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	0.001
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	0.001
COG2890	280	COG2890, HemK, Methylase of polypeptide chain rele	0.001
PRK00216	239	PRK00216, ubiE, ubiquinone/menaquinone biosynthesi	0.002
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	0.002
TIGR04188	363	TIGR04188, methyltr_grsp, methyltransferase, ATP-g	0.003
TIGR04188	363	TIGR04188, methyltr_grsp, methyltransferase, ATP-g	0.003
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	0.003
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	0.004
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	0.004
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	0.004

>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)

 Score =  181 bits (462), Expect = 2e-54
 Identities = 81/206 (39%), Positives = 122/206 (59%), Gaps = 12/206 (5%)

Query: 67  DLVNHLRDIGKIRTERVAQAFYKVDRGNFANEE----PYQDVSASLGYAGVMNAPNQIAD 122
            L+ +L++ G I +++VA+A   VDR  F  E      Y+D+  S+GY   ++AP+  A 
Sbjct: 5   ALIENLKNYGVIASDKVAEAMLAVDREEFVPESFKSYAYEDIPLSIGYGQTISAPHMHAM 64

Query: 123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGN 182
             E L+L    G +VL++GSGSGY T  FA MVG  G V+ +EHIPEL+E + RN+ K  
Sbjct: 65  MLELLEL--KPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNLEK-- 120

Query: 183 KDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMD 242
              L    V +V  D R+G+   APYD I+ G    E+P  +++QLK+GGR++ P+GP +
Sbjct: 121 ---LGLENVIVVVGDGRQGWPEFAPYDAIHVGAAAPEIPEALIDQLKEGGRLVIPVGP-N 176

Query: 243 DFQKLTQIDRFHDNTLQKTDLFEVAY 268
             Q L Q D+ +D ++   DL  V +
Sbjct: 177 GNQVLQQFDKRNDGSVVIKDLEGVRF 202

Length = 210

>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate) O-methyltransferase

 Score =  151 bits (382), Expect = 8e-43
 Identities = 67/198 (33%), Positives = 105/198 (53%), Gaps = 13/198 (6%)

Query: 68  LVNHLRDIGKIRTERVAQAFYKVDRGNFANEE----PYQDVSASLGYAGVMNAPNQIADA 123
           L++ L + G I+++RV  A   V R  F  E      Y D    +GY   ++AP+ +A  
Sbjct: 10  LIDKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMM 69

Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
            E L+L    G KVL++G+GSGYQ  V A +VG  G V+ +E IPEL E + R + K   
Sbjct: 70  TELLEL--KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK--- 124

Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDD 243
             L    V ++  D  +G+ P APYD IY      ++P  +++QLK+GG ++ P+G  + 
Sbjct: 125 --LGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAGPKIPEALIDQLKEGGILVMPVG--EY 180

Query: 244 FQKLTQIDRFHDNTLQKT 261
            Q L + ++     + K 
Sbjct: 181 LQVLKRAEKRGGEIIIKD 198

This is an all-kingdom (but not all species) full-length ortholog enzyme for repairing aging proteins. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt [Protein fate, Protein modification and repair]. Length = 215

>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score =  131 bits (332), Expect = 1e-35
 Identities = 73/205 (35%), Positives = 108/205 (52%), Gaps = 16/205 (7%)

Query: 68  LVNHLRDIGKIRTERVAQAFYKVDRGNFANEE----PYQDVSASLGYAGVMNAPNQIADA 123
           LV  LR  G I  ERV +AF  V R  F         Y+D +  +G    ++AP+ +A  
Sbjct: 6   LVERLRTEG-ITDERVLKAFLAVPRELFVPAAYKHLAYEDRALPIGCGQTISAPHMVARM 64

Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
            + L+L    G +VL++G+GSGYQ  V A +VG   +V+ +E I EL E + RN+     
Sbjct: 65  LQLLEL--KPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNL----- 114

Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDD 243
           + L    V +   D  +G+  EAPYD I       EVP  +L+QLK GGR++ P+G    
Sbjct: 115 ETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVGS-GP 173

Query: 244 FQKLTQIDRFHDNTLQKTDLFEVAY 268
            Q+L +I +  D   ++ DLF V +
Sbjct: 174 AQRLLRITKDGDGNFERRDLFNVRF 198

Length = 209

>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase; Provisional

 Score =  127 bits (321), Expect = 5e-34
 Identities = 68/205 (33%), Positives = 108/205 (52%), Gaps = 15/205 (7%)

Query: 68  LVNHLRDIGKIRTERVAQAFYKVDRGNF----ANEEPYQDVSASLGYAGVMNAPNQIADA 123
           +   +R+ G I++++V  A  KV R  F      E  Y D    +GY   ++A + +A  
Sbjct: 10  IEELIRE-GYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIM 68

Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
            E L L   +G KVL++G+GSGY   V A +VG +GKV+ +E IPEL E + + + K   
Sbjct: 69  CELLDLK--EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY 126

Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDD 243
           D      V ++  D   GY   APYD IY      ++P  ++ QLK GG ++ P+G    
Sbjct: 127 D-----NVEVIVGDGTLGYEENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIPVG--SY 179

Query: 244 FQKLTQIDRFHDNTLQKTDLFEVAY 268
            Q+L ++++ +   + K  L EVA+
Sbjct: 180 SQELIRVEKDNGK-IIKKKLGEVAF 203

Length = 212

>gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase; Reviewed

 Score =  105 bits (264), Expect = 5e-26
 Identities = 64/205 (31%), Positives = 100/205 (48%), Gaps = 17/205 (8%)

Query: 68  LVNHLRDIGKIRTERVAQAFYKVDRGNFANEE----PYQDVSASLGYAGVMNAPNQIADA 123
           LV  LR  G I  ERV +A     R  F  E      Y++ +  +G    ++ P  +A  
Sbjct: 12  LVLRLRAEG-ILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARM 70

Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
            E L+L    G +VL++G+GSGYQ  V AH+V    +V  VE I  L   + R + +   
Sbjct: 71  TELLEL--KPGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQ--- 122

Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDD 243
             L    V +   D  +G+   AP+D I       E+P  +L QLK+GG ++AP+G  ++
Sbjct: 123 --LGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPEIPRALLEQLKEGGILVAPVGG-EE 179

Query: 244 FQKLTQIDRFHDNTLQKTDLFEVAY 268
            Q LT++ +      ++  L EV +
Sbjct: 180 QQLLTRVRK-RGGRFEREVLEEVRF 203

Length = 212

>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 91.8 bits (228), Expect = 2e-21
 Identities = 60/189 (31%), Positives = 91/189 (48%), Gaps = 11/189 (5%)

Query: 68  LVNHLRDIGKIRTERVAQAFYKVDRGNFANEE----PYQDVSASLGYAGVMNAPNQIADA 123
           LV  L   G I++ERV +A   V R  F   E     Y+D    L     ++AP+ +A  
Sbjct: 5   LVEELVREGIIKSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVAMM 64

Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
            E ++     G K+L++G+GSGYQ  V A  +   GKV  VE + EL   + +NI +   
Sbjct: 65  CELIEPR--PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIER--- 119

Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDD 243
            L   G V +   D + G    AP+D I      S +PS ++ QLK GG ++ P+     
Sbjct: 120 -LGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIPSALVRQLKDGGVLVIPVEE-GV 177

Query: 244 FQKLTQIDR 252
            Q L ++ +
Sbjct: 178 GQVLYKVVK 186

Length = 205

>gnl|CDD|234563 TIGR04364, methyltran_FxLD, methyltransferase, FxLD system

 Score = 94.0 bits (234), Expect = 9e-21
 Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 29/188 (15%)

Query: 67  DLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGV------------- 113
            LV+ LR+ G IR+ RV  AF  V R  FA   P +   A      V             
Sbjct: 7   ALVDELREDGVIRSPRVEAAFRTVPRHLFAPGAPLEKAYA--ANRAVVTKRDEDGAALSS 64

Query: 114 MNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEA 173
           ++AP+  A   E   +    G +VL++GSG GY   + A +VGP+G+V  V+   ++ + 
Sbjct: 65  VSAPHIQAMMLEQAGVE--PGMRVLEIGSG-GYNAALLAELVGPSGEVTTVDIDEDVTD- 120

Query: 174 SLRNISKGNKDLLDS---GRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKK 230
                    +  L +    +V +V ADA  G    APYD I       ++P   L+QL  
Sbjct: 121 -------RARACLAAAGYPQVTVVLADAEAGVPELAPYDRIIVTVGAWDIPPAWLDQLAP 173

Query: 231 GGRILAPI 238
           GGR++ P+
Sbjct: 174 GGRLVVPL 181

Members of this family resemble occur regularly in the vicinity of lantibiotic biosynthesis enzymes and their probable target, the FxLD family of putative ribosomal natural product precursor (TIGR04363). Members resemble protein-L-isoaspartate O-methyltransferase (TIGR00080) and a predicted methyltranserase, TIGR04188, of another putative peptide modification system. Length = 394

>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 82.2 bits (203), Expect = 3e-17
 Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 12/166 (7%)

Query: 80  TERVAQAFYKVDRGNFANEE-P----YQD-VSASLGYAGVMNAPNQIADAAENLK-LHLV 132
           ++ +A+AF +V R  F  +  P    Y+D V  S       +  +Q +  A  ++ + L 
Sbjct: 20  SDHIAKAFLEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVGLD 79

Query: 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVR 192
            G +VL++G G+GY   V + +VG  G V+ VE+  ++ E + RN+ +     L    V 
Sbjct: 80  KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRR-----LGIENVI 134

Query: 193 IVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPI 238
            V  D   G    APYDVI+    V EVP     QLK+GGR++ PI
Sbjct: 135 FVCGDGYYGVPEFAPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPI 180

Length = 322

>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)

 Score = 71.2 bits (175), Expect = 3e-14
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 435 PHILDLC--YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI 492
           PH+  +    L L  G +VLEIGSGSGYL    A +VG  G V  +EH+ ++   +  N+
Sbjct: 59  PHMHAMMLELLELKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNL 118

Query: 493 STNHID 498
               ++
Sbjct: 119 EKLGLE 124

Length = 210

>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)

 Score = 69.7 bits (171), Expect = 1e-13
 Identities = 24/63 (38%), Positives = 35/63 (55%)

Query: 362 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN 421
           H + L  L L  G +VLEIGSGSGYL    A +VG  G V  +EH+ ++   +  N+   
Sbjct: 62  HAMMLELLELKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNLEKL 121

Query: 422 HID 424
            ++
Sbjct: 122 GLE 124

Length = 210

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 65.4 bits (160), Expect = 3e-13
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 9/107 (8%)

Query: 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVR 192
            GA+VLD+G G+G    +    + P  +V GV+  PE++E +  N            R+ 
Sbjct: 1   PGARVLDIGCGTGS-LAIELARLFPGARVTGVDLSPEMLELARENAKLALGP-----RIT 54

Query: 193 IVEADAREGYLPEAPYDVIYYGGCVSEVP---SRVLNQLKKGGRILA 236
            V+ DA +       +D ++ GG   ++      + + LK GGR++ 
Sbjct: 55  FVQGDAPDALDLLEGFDAVFIGGGGGDLLELLDALASLLKPGGRLVL 101

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism]

 Score = 61.1 bits (149), Expect = 7e-11
 Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 8/111 (7%)

Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
           KL    G ++ D+G+G+G  T  +A + GP+G+VI +E   E +E   RN ++       
Sbjct: 29  KLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAAR-----FG 82

Query: 188 SGRVRIVEADAREGYLPEAPYDVIYYGGCVS--EVPSRVLNQLKKGGRILA 236
              + +VE DA E        D I+ GG  +  E+      +LK GGR++A
Sbjct: 83  VDNLEVVEGDAPEALPDLPSPDAIFIGGGGNIEEILEAAWERLKPGGRLVA 133

Length = 187

>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate) O-methyltransferase

 Score = 59.5 bits (144), Expect = 3e-10
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 427 ANETIEIIPHILDLC-YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIA 485
             +TI     +  +   L L  G KVLEIG+GSGY A ++A +VG  G V  +E + ++A
Sbjct: 56  YGQTISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELA 115

Query: 486 IESIANIST 494
            ++   +  
Sbjct: 116 EKAERRLRK 124

This is an all-kingdom (but not all species) full-length ortholog enzyme for repairing aging proteins. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt [Protein fate, Protein modification and repair]. Length = 215

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 57.4 bits (139), Expect = 3e-10
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 15/111 (13%)

Query: 136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195
           +VLDLG G+G      A   GP  +V GV+  P  +E + +  +    D      V +++
Sbjct: 1   RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLAD-----NVEVLK 53

Query: 196 ADAREG-YLPEAPYDVIYYGG---CVSEVPSRVLNQ----LKKGGRILAPI 238
            DA E     +  +DVI        + E  +R L +    LK GG ++  +
Sbjct: 54  GDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTL 104

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate) O-methyltransferase

 Score = 59.5 bits (144), Expect = 4e-10
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST 420
            L L  G KVLEIG+GSGY A ++A +VG  G V  +E + ++A ++   +  
Sbjct: 72  LLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK 124

This is an all-kingdom (but not all species) full-length ortholog enzyme for repairing aging proteins. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt [Protein fate, Protein modification and repair]. Length = 215

>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

 Score = 58.7 bits (142), Expect = 5e-10
 Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 10/114 (8%)

Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
           KL L  G  +LD+G G+G  T   + +VG TGKV  V+   + I  + RN  K    +L+
Sbjct: 35  KLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG--VLN 92

Query: 188 SGRVRIVEADAREGYLPEAP--YDVIYYGGCVSEVP---SRVLNQLKKGGRILA 236
              + +++ +A E  L      +D I+ GG   ++    S     +KKGGRI+ 
Sbjct: 93  --NIVLIKGEAPE-ILFTINEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVI 143

Length = 198

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 54.4 bits (131), Expect = 6e-09
 Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 16/139 (11%)

Query: 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVR 192
            G KVLDLG G+GY T + A  +GP  +V+G++   E IE      +K N   L    V 
Sbjct: 3   SGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIE-----KAKENAKKLGYENVE 57

Query: 193 IVEADARE---GYLPEAPYDVI------YYGGCVSEVPSRVLNQLKKGGRILA--PIGPM 241
            ++ D  E     L +  +DV+       +     +V   ++  LK GG ++   P+   
Sbjct: 58  FIQGDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDPVLLS 117

Query: 242 DDFQKLTQIDRFHDNTLQK 260
           +    L  ++R +   L+ 
Sbjct: 118 ELPALLEDLERLYAGVLEG 136

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide maturase system

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 9/113 (7%)

Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
            L + DG +VL++G+G+GY   +  H +G    V  VE  P L   +   ++        
Sbjct: 102 ALDVEDGHRVLEIGTGTGYSAALLCHRLG-DDNVTSVEVDPGLAARAASALA-------A 153

Query: 188 SG-RVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIG 239
           +G    +V  D   G+ P APYD I     V  VP   L Q + GG IL  + 
Sbjct: 154 AGYAPTVVTGDGLLGHPPRAPYDRIIATCAVRRVPPAWLRQTRPGGVILTTLS 206

Members of this protein family are predicted SAM-dependent methyltransferases that regularly occur in the context of a putative peptide modification ATP-grasp enzyme (TIGR04187, related to enzymes of microviridin maturation) and a putative ribosomal peptide modification target (TIGR04186). Length = 363

>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 35/93 (37%), Positives = 42/93 (45%), Gaps = 22/93 (23%)

Query: 103 DVSASLGY---------AGVMNA-----PNQIADAAENLKLHLVDGAKVLDLGSGSGYQT 148
           D S SLGY          G         P  +A     LK     G  VLDLGSG G+  
Sbjct: 41  DPSTSLGYSEEELAAVPEGANLGLGCGNPTALA----ELKP----GETVLDLGSGGGFDC 92

Query: 149 CVFAHMVGPTGKVIGVEHIPELIEASLRNISKG 181
            + A  VGPTGKVIGV+  PE++  +  N  K 
Sbjct: 93  FLAARRVGPTGKVIGVDMTPEMLAKARANARKA 125

Length = 272

>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
           +L +  G++VL+ G+GSG  T   A  VGP G V   E   +  + +  N+S+    L D
Sbjct: 89  RLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF--GLGD 146

Query: 188 SGRVRIVEADAREGYLPEAPYDVI 211
             RV +   D REG   E   D +
Sbjct: 147 --RVTLKLGDVREGIDEE-DVDAV 167

Length = 256

>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 53.0 bits (128), Expect = 5e-08
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIAN 428
           L L  G +VLEIG+GSGY A ++A LV   G V  +E      IE +A  +  +++ +  
Sbjct: 68  LELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIER-----IEELAEQARRNLETLGY 119

Query: 429 ETIEII 434
           E + + 
Sbjct: 120 ENVTVR 125

Length = 209

>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 53.0 bits (128), Expect = 5e-08
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIAN 502
           L L  G +VLEIG+GSGY A ++A LV   G V  +E      IE +A  +  +++ +  
Sbjct: 68  LELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIER-----IEELAEQARRNLETLGY 119

Query: 503 ETIEII 508
           E + + 
Sbjct: 120 ENVTVR 125

Length = 209

>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 5/66 (7%)

Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIAN 428
           L+L  G KVLEIG+GSGY A ++A +VG +G V  +E      I  +A  +   +  +  
Sbjct: 72  LDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIER-----IPELAEKAKKTLKKLGY 126

Query: 429 ETIEII 434
           + +E+I
Sbjct: 127 DNVEVI 132

Length = 212

>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 5/66 (7%)

Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIAN 502
           L+L  G KVLEIG+GSGY A ++A +VG +G V  +E      I  +A  +   +  +  
Sbjct: 72  LDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIER-----IPELAEKAKKTLKKLGY 126

Query: 503 ETIEII 508
           + +E+I
Sbjct: 127 DNVEVI 132

Length = 212

>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 12/116 (10%)

Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
           KL L  G  + D+G+G+G  T   A +V   G+V  +E  PE    +L  I + N     
Sbjct: 14  KLRLRPGDVLWDIGAGTGSVTIEAARLVPN-GRVYAIERNPE----ALDLIER-NLRRFG 67

Query: 188 SGRVRIVEADAREGY--LPEAPYDVIYYGGCVS---EVPSRVLNQLKKGGRILAPI 238
              + IVE DA E    L   P D ++ GG      E+   V  +L+ GGRI+   
Sbjct: 68  VSNIVIVEGDAPEAPEDLLPDP-DAVFVGGSGGLLQEILEAVERRLRPGGRIVLNA 122

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124

>gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase; Reviewed

 Score = 49.4 bits (119), Expect = 8e-07
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 14/82 (17%)

Query: 427 ANETIEIIPHI--LDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDI 484
             +TI   P++       L L  G +VLEIG+GSGY A ++AHLV     V  +E +  +
Sbjct: 57  CGQTISQ-PYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTL 112

Query: 485 AIE--------SIANISTNHID 498
             E         + N+S  H D
Sbjct: 113 QWEAKRRLKQLGLHNVSVRHGD 134

Length = 212

>gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase; Reviewed

 Score = 49.0 bits (118), Expect = 1e-06
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 11/65 (16%)

Query: 368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE--------SIANIS 419
            L L  G +VLEIG+GSGY A ++AHLV     V  +E +  +  E         + N+S
Sbjct: 73  LLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVS 129

Query: 420 TNHID 424
             H D
Sbjct: 130 VRHGD 134

Length = 212

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDI 410
           P   R  A   +L  L +  G +VL++G G G  A  +A  VGP G V G+   E M+ +
Sbjct: 2   PDFRRYRARTFEL--LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLAL 59

Query: 411 AIESIAN 417
           A E  A 
Sbjct: 60  AKERAAG 66

Length = 241

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 22/119 (18%)

Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
           L +  G +VLD+G G G      A  VGP G+V+G++    ++  + +  + G       
Sbjct: 15  LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALA-KERAAGL-----G 68

Query: 189 GRVRIVEADAREGYLPEAPYDVIYYGGCVS-------EVPSRVLNQ----LKKGGRILA 236
             V  V  DA     P+  +D        S       E P+R L +    L+ GGR++ 
Sbjct: 69  PNVEFVRGDADGLPFPDGSFDA-----VRSDRVLQHLEDPARALAEIARVLRPGGRVVV 122

Length = 241

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIAN 491
           L +  G +VL++G G G  A  +A  VGP G V G+   E M+ +A E  A 
Sbjct: 15  LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG 66

Length = 241

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 19/104 (18%)

Query: 138 LDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD 197
           LD+G G+G      A   G   +V GV+  PE++  + +               + V  D
Sbjct: 1   LDVGCGTGLLAEALARRGG--ARVTGVDLSPEMLALARKR-----------APRKFVVGD 47

Query: 198 AREGYLPEAPYDVIYYGGCVSEV--PSRVLNQ----LKKGGRIL 235
           A +   P+  +DV+     +  +  P R L +    LK GG+++
Sbjct: 48  AEDLPFPDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLV 91

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 45.5 bits (108), Expect = 5e-06
 Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)

Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI 193
           G +VLD G+GSG    + A   GP  +V+GVE  PE    + R ++        + RVR+
Sbjct: 1   GDRVLDPGAGSGA-FLLAAARAGPDARVVGVELDPEAAALARRRLAL----AGLAPRVRV 55

Query: 194 VEADARE-GYLPEAPYDVIY 212
           V  DARE   LP+  +D++ 
Sbjct: 56  VVGDARELLELPDGSFDLVL 75

This family contains methyltransferase domains. Length = 117

>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS 419
             +I+    L +  G++VLE G+GSG L   +A  VGP GHVT  E   D A  +  N+S
Sbjct: 83  AGYIVA--RLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLS 140

Length = 256

>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase

 Score = 46.7 bits (111), Expect = 8e-06
 Identities = 17/68 (25%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDL 425
           +N+  G   L++  G+   +  +A  VGP GHV GL   E+M+ +  + + +   ++++L
Sbjct: 41  MNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVEL 100

Query: 426 IANETIEI 433
           +    +E+
Sbjct: 101 VHGNAMEL 108

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231

>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase

 Score = 46.7 bits (111), Expect = 8e-06
 Identities = 17/68 (25%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDL 499
           +N+  G   L++  G+   +  +A  VGP GHV GL   E+M+ +  + + +   ++++L
Sbjct: 41  MNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVEL 100

Query: 500 IANETIEI 507
           +    +E+
Sbjct: 101 VHGNAMEL 108

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231

>gnl|CDD|234563 TIGR04364, methyltran_FxLD, methyltransferase, FxLD system

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 11/72 (15%)

Query: 335 ITTRDKYGRLVHG-SAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAH 393
           +T RD+ G  +   SAP          A +L+     +  G +VLEIGSG GY A L+A 
Sbjct: 52  VTKRDEDGAALSSVSAPH-------IQAMMLE--QAGVEPGMRVLEIGSG-GYNAALLAE 101

Query: 394 LVGPTGHVTGLE 405
           LVGP+G VT ++
Sbjct: 102 LVGPSGEVTTVD 113

Members of this family resemble occur regularly in the vicinity of lantibiotic biosynthesis enzymes and their probable target, the FxLD family of putative ribosomal natural product precursor (TIGR04363). Members resemble protein-L-isoaspartate O-methyltransferase (TIGR00080) and a predicted methyltranserase, TIGR04188, of another putative peptide modification system. Length = 394

>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 23/52 (44%), Positives = 30/52 (57%)

Query: 442 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS 493
            L +  G++VLE G+GSG L   +A  VGP GHVT  E   D A  +  N+S
Sbjct: 89  RLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLS 140

Length = 256

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH 422
           L  G KVL++G G+GYL  ++A  +GP   V G++ + + AIE     +   
Sbjct: 1   LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGID-ISEEAIEKAKENAKKL 51

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 445 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH 496
           L  G KVL++G G+GYL  ++A  +GP   V G++ + + AIE     +   
Sbjct: 1   LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGID-ISEEAIEKAKENAKKL 51

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|234563 TIGR04364, methyltran_FxLD, methyltransferase, FxLD system

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 20/32 (62%), Positives = 25/32 (78%), Gaps = 1/32 (3%)

Query: 448 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE 479
           G +VLEIGSG GY A L+A LVGP+G VT ++
Sbjct: 83  GMRVLEIGSG-GYNAALLAELVGPSGEVTTVD 113

Members of this family resemble occur regularly in the vicinity of lantibiotic biosynthesis enzymes and their probable target, the FxLD family of putative ribosomal natural product precursor (TIGR04363). Members resemble protein-L-isoaspartate O-methyltransferase (TIGR00080) and a predicted methyltranserase, TIGR04188, of another putative peptide modification system. Length = 394

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 39/138 (28%), Positives = 53/138 (38%), Gaps = 34/138 (24%)

Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
           AEN       G +VL++G+GSG    V A       KV+GV+  P  +E +  N    N 
Sbjct: 16  AENAVD--KKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNN- 69

Query: 184 DLLDSGRVRIVEADAREG--------------YLPEAPYDVI-------YYGG-CVSEVP 221
             + +  V ++ +D  E               YLP    +           GG    EV 
Sbjct: 70  --IRNNGVEVIRSDLFEPFRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVI 127

Query: 222 SRVL----NQLKKGGRIL 235
            R L      LK GGRIL
Sbjct: 128 DRFLDEVGRYLKPGGRIL 145

Length = 188

>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 17/39 (43%), Positives = 27/39 (69%)

Query: 368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH 406
           ++ L +G +VLEIG G+GY A +M+ +VG  G V  +E+
Sbjct: 75  WVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEY 113

Length = 322

>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 17/39 (43%), Positives = 27/39 (69%)

Query: 442 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH 480
           ++ L +G +VLEIG G+GY A +M+ +VG  G V  +E+
Sbjct: 75  WVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEY 113

Length = 322

>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 15/110 (13%)

Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG--RV 191
           G K LD+  G+G  T   +   G +GKV+G++    +++       +G K   + G   +
Sbjct: 48  GNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLK-------EGEKKAKEEGKYNI 100

Query: 192 RIVEADAREGYLPEAPYDVIYYGGCVSEVPSR--VLNQ----LKKGGRIL 235
             ++ +A E    +  +D++     +   P    VL +    LK GGR++
Sbjct: 101 EFLQGNAEELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRVV 150

Length = 233

>gnl|CDD|201699 pfam01269, Fibrillarin, Fibrillarin

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 18/92 (19%)

Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIP----ELIEASLRNISKGNK 183
            + +  G+KVL LG+ SG      + +VGP G V  VE  P    ELI     N++K   
Sbjct: 68  NIPIKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELI-----NMAKKRP 122

Query: 184 DLLDSGRVRIVEADAR--EGYLPEAP-YDVIY 212
           ++     V I+E DAR  + Y       DVI+
Sbjct: 123 NI-----VPILE-DARHPQKYRMLVEMVDVIF 148

Length = 229

>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific

 Score = 42.8 bits (102), Expect = 2e-04
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 7/79 (8%)

Query: 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVR 192
              +VLDLG+GSG      A    P  +V  V+  PE +      +++ N   L    V 
Sbjct: 87  GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALA-----VARKNAARLGLDNVE 140

Query: 193 IVEADAREGYLPEAPYDVI 211
            +++D  E  LP   +D+I
Sbjct: 141 FLQSDWFEP-LPGGKFDLI 158

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251

>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

 Score = 42.4 bits (101), Expect = 3e-04
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIE-SIANISTNHID 424
           L +  G KVL++  G+G LA  +A  VG TG V GL   E M+ +  E       + +++
Sbjct: 47  LGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVE 106

Query: 425 LIA 427
            + 
Sbjct: 107 FVQ 109

Length = 239

>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

 Score = 42.4 bits (101), Expect = 3e-04
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIE-SIANISTNHID 498
           L +  G KVL++  G+G LA  +A  VG TG V GL   E M+ +  E       + +++
Sbjct: 47  LGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVE 106

Query: 499 LIA 501
            + 
Sbjct: 107 FVQ 109

Length = 239

>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 8/74 (10%)

Query: 131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGR 190
            ++G  VLDLG+G+G      A + G + +V+ V+  PE +E +  N  +        G 
Sbjct: 43  DLEGKTVLDLGAGTGILAIGAALL-GAS-RVLAVDIDPEALEIARANAEELL------GD 94

Query: 191 VRIVEADAREGYLP 204
           V  V AD  +    
Sbjct: 95  VEFVVADVSDFRGK 108

Length = 198

>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 17/88 (19%), Positives = 39/88 (44%), Gaps = 5/88 (5%)

Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLL 186
           L   L    ++L++G+  GY     A  +   G++  +E   E  E +  N+++     +
Sbjct: 53  LLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG---V 109

Query: 187 DSGRVRIVEADAREGY--LPEAPYDVIY 212
           D     ++  DA +    L +  +D+++
Sbjct: 110 DDRIELLLGGDALDVLSRLLDGSFDLVF 137

Length = 219

>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 3/70 (4%)

Query: 425 LIANETIEIIPHILD-LCYL-NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMM 482
           L A  TI   PH++  +C L     G K+LE+G+GSGY A + A  +   G V  +E + 
Sbjct: 49  LFAGATISA-PHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVK 107

Query: 483 DIAIESIANI 492
           ++AI +  NI
Sbjct: 108 ELAIYAAQNI 117

Length = 205

>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE 413
            L  G  VL++GSG G+   L A  VGPTG V G++ M    + 
Sbjct: 74  ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVD-MTPEMLA 116

Length = 272

>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE 487
            L  G  VL++GSG G+   L A  VGPTG V G++ M    + 
Sbjct: 74  ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVD-MTPEMLA 116

Length = 272

>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 6/102 (5%)

Query: 363 ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH 422
            L L  L L  G  + +IG+G+G +    A LV   G V  +E       E++  I  N 
Sbjct: 9   ALTLSKLRLRPGDVLWDIGAGTGSVTIEAARLVPN-GRVYAIER----NPEALDLIERNL 63

Query: 423 IDLIANETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATL 464
                +  I I+         +L      + +G   G L  +
Sbjct: 64  RRFGVSN-IVIVEGDAPEAPEDLLPDPDAVFVGGSGGLLQEI 104

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124

>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 437 ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH 496
            L L  L L  G  + +IG+G+G +    A LV   G V  +E       E++  I  N 
Sbjct: 9   ALTLSKLRLRPGDVLWDIGAGTGSVTIEAARLVPN-GRVYAIER----NPEALDLIERNL 63

Query: 497 IDLIANETIEIIREF 511
                +  I I+   
Sbjct: 64  RRFGVSN-IVIVEGD 77

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 13/86 (15%)

Query: 418 ISTNHIDLIANETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG 477
           +S     L     I +         L +  G KVL++  G+G +A L+A  VG  G V G
Sbjct: 31  MSFGLHRLWRRALISL---------LGIKPGDKVLDVACGTGDMALLLAKSVGT-GEVVG 80

Query: 478 LEH---MMDIAIESIANISTNHIDLI 500
           L+    M+++A E +      +++ +
Sbjct: 81  LDISESMLEVAREKLKKKGVQNVEFV 106

Length = 238

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 20/112 (17%)

Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIE-ASLRNISKGNKDLLDSGRVR 192
           G KVLD+  G+G    + A  VG  G+V+G++    ++E A  +   KG ++      V 
Sbjct: 52  GDKVLDVACGTGDMALLLAKSVGT-GEVVGLDISESMLEVAREKLKKKGVQN------VE 104

Query: 193 IVEADAREGYLPEAPYDVIYYGGCVSEVP---------SRVLNQLKKGGRIL 235
            V  DA     P+  +D +     +  V           RV   LK GGR+L
Sbjct: 105 FVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRV---LKPGGRLL 153

Length = 238

>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 8/85 (9%)

Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLL 186
           L L L    ++LDLG+GSG      A   GP  +VI V+  P+ +  +  N      +  
Sbjct: 104 LALLLQLDKRILDLGTGSGAIAIALAKE-GPDAEVIAVDISPDALALARENA-----ERN 157

Query: 187 DSGRVRIVEADAREGYLPEAPYDVI 211
              RV +V++D  E       +D+I
Sbjct: 158 GLVRVLVVQSDLFEPLRG--KFDLI 180

Length = 280

>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

 Score = 39.4 bits (93), Expect = 0.002
 Identities = 40/138 (28%), Positives = 54/138 (39%), Gaps = 40/138 (28%)

Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKG--------NKDL 185
           G KVLDL  G+G      A  VG TG+V+G++             S+G         +DL
Sbjct: 52  GDKVLDLACGTGDLAIALAKAVGKTGEVVGLD------------FSEGMLAVGREKLRDL 99

Query: 186 LDSGRVRIVEADAREGYLPEAPYDV--IYYG--------GCVSEVPSRVLNQLKKGGR-- 233
             SG V  V+ DA     P+  +D   I +G          + E+  RV   LK GGR  
Sbjct: 100 GLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREM-YRV---LKPGGRLV 155

Query: 234 IL----APIGPMDDFQKL 247
           IL        P+      
Sbjct: 156 ILEFSKPTNPPLKKAYDF 173

Length = 239

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH---MMDIAIESIANISTNHIDL 425
           L +  G KVL++  G+G +A L+A  VG  G V GL+    M+++A E +      +++ 
Sbjct: 47  LGIKPGDKVLDVACGTGDMALLLAKSVGT-GEVVGLDISESMLEVAREKLKKKGVQNVEF 105

Query: 426 I 426
           +
Sbjct: 106 V 106

Length = 238

>gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide maturase system

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 17/37 (45%), Positives = 26/37 (70%), Gaps = 1/37 (2%)

Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE 405
           L++  G +VLEIG+G+GY A L+ H +G   +VT +E
Sbjct: 103 LDVEDGHRVLEIGTGTGYSAALLCHRLG-DDNVTSVE 138

Members of this protein family are predicted SAM-dependent methyltransferases that regularly occur in the context of a putative peptide modification ATP-grasp enzyme (TIGR04187, related to enzymes of microviridin maturation) and a putative ribosomal peptide modification target (TIGR04186). Length = 363

>gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide maturase system

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 17/37 (45%), Positives = 26/37 (70%), Gaps = 1/37 (2%)

Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE 479
           L++  G +VLEIG+G+GY A L+ H +G   +VT +E
Sbjct: 103 LDVEDGHRVLEIGTGTGYSAALLCHRLG-DDNVTSVE 138

Members of this protein family are predicted SAM-dependent methyltransferases that regularly occur in the context of a putative peptide modification ATP-grasp enzyme (TIGR04187, related to enzymes of microviridin maturation) and a putative ribosomal peptide modification target (TIGR04186). Length = 363

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 30/132 (22%), Positives = 43/132 (32%), Gaps = 38/132 (28%)

Query: 115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTG-KVIGVEHIPELIEA 173
                +A     L   L  G +VLD+G G+G        ++   G  V GV         
Sbjct: 4   QRERFLARLLARLLPRLKPGGRVLDIGCGTGI----LLRLLRERGFDVTGV--------- 50

Query: 174 SLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEV------PSRVLNQ 227
                     D   +  +     DA +  +    YD+I       EV      P  +L Q
Sbjct: 51  ----------DPSPAAVLIFSLFDAPDPAVLAGKYDLI----TAFEVLEHLPDPPALLQQ 96

Query: 228 ----LKKGGRIL 235
               LK GG +L
Sbjct: 97  LRELLKPGGVLL 108

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 22/101 (21%)

Query: 373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIANISTNHIDL---- 425
            GA+VL+IG G+G LA +    + P   VTG++    M+++A E+        I      
Sbjct: 1   PGARVLDIGCGTGSLA-IELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGD 59

Query: 426 --------------IANETIEIIPHILDLCYLNLHRGAKVL 452
                                 +  +LD     L  G +++
Sbjct: 60  APDALDLLEGFDAVFIGGGGGDLLELLDALASLLKPGGRLV 100

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 12/106 (11%)

Query: 137 VLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG-RVRIVE 195
           +LDLG G+G      A        V GV+        S   +    + L D G +VR V 
Sbjct: 1   ILDLGCGTGRVLRALARAGPS--SVTGVD-------ISKEALELAKERLRDKGPKVRFVV 51

Query: 196 ADAREGYLPEAPYDVIY-YGGCVSEVPSRVLNQL-KKGGRILAPIG 239
           ADAR+    E  +D++   G  +  +  + L  L ++  R+L P G
Sbjct: 52  ADARDLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 38.7 bits (87), Expect = 0.004
 Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 14/146 (9%)

Query: 99  EPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPT 158
           E Y  ++  L    ++            L   L  G  VLD+G G+G +  + A + G  
Sbjct: 14  ELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTG-RLALLARLGGRG 72

Query: 159 GKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVS 218
             V+GV+  PE++      +++   +    G V  V ADA  G LP            + 
Sbjct: 73  AYVVGVDLSPEMLA-----LARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLL 127

Query: 219 --------EVPSRVLNQLKKGGRILA 236
                   +    +L  LK GGR++ 
Sbjct: 128 VLHLLPPAKALRELLRVLKPGGRLVL 153

Length = 257

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	511
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	100.0
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	100.0
KOG1661|consensus	237		99.97
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.96
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.96
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.96
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.92
PLN02336	475	phosphoethanolamine N-methyltransferase	99.89
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.87
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.87
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.68
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.66
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.65
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.64
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.63
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.63
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.58
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.58
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.56
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.55
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.55
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.55
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.55
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.54
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.54
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.54
COG2890	280	HemK Methylase of polypeptide chain release factor	99.53
PLN02244	340	tocopherol O-methyltransferase	99.53
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.52
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.52
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.52
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.5
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.5
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.5
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.49
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.49
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.49
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.49
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.48
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.48
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.47
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.47
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.46
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.46
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.46
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.44
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.44
KOG2904|consensus	328		99.44
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.43
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.43
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.43
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.43
PRK11207	197	tellurite resistance protein TehB; Provisional	99.43
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.43
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.43
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.42
PRK04266	226	fibrillarin; Provisional	99.42
KOG1540|consensus	296		99.41
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.41
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.41
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.41
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.41
PRK07402	196	precorrin-6B methylase; Provisional	99.41
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.41
COG4123	248	Predicted O-methyltransferase [General function pr	99.4
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.4
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.39
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.39
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.39
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.39
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.39
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.38
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.38
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.37
PRK08317	241	hypothetical protein; Provisional	99.36
PLN02336	475	phosphoethanolamine N-methyltransferase	99.36
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.36
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.35
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.34
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.34
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.34
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.34
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.33
COG4122	219	Predicted O-methyltransferase [General function pr	99.33
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.33
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.33
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.33
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.33
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.32
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.32
PRK14967	223	putative methyltransferase; Provisional	99.31
KOG1270|consensus	282		99.31
PTZ00146	293	fibrillarin; Provisional	99.31
PLN02490	340	MPBQ/MSBQ methyltransferase	99.31
PLN02476	278	O-methyltransferase	99.31
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.3
PLN02672	1082	methionine S-methyltransferase	99.3
PLN03075	296	nicotianamine synthase; Provisional	99.3
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.29
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.29
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.29
PRK06922	677	hypothetical protein; Provisional	99.29
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.28
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.28
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.28
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.27
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.27
PRK12335	287	tellurite resistance protein TehB; Provisional	99.27
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.27
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.26
PRK05785	226	hypothetical protein; Provisional	99.26
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.25
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.25
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.24
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.24
PRK07402	196	precorrin-6B methylase; Provisional	99.22
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.22
PRK14968	188	putative methyltransferase; Provisional	99.22
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.21
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.21
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.21
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.21
PRK04457	262	spermidine synthase; Provisional	99.19
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.19
KOG1271|consensus	227		99.19
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.19
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.19
KOG1541|consensus	270		99.17
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.16
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.15
TIGR03438	301	probable methyltransferase. This model represents	99.15
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.14
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.13
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.12
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.1
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	99.1
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.1
TIGR00438	188	rrmJ cell division protein FtsJ.	99.09
PRK00811	283	spermidine synthase; Provisional	99.07
PHA03412	241	putative methyltransferase; Provisional	99.07
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.07
PRK06202	232	hypothetical protein; Provisional	99.06
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.05
PRK04266	226	fibrillarin; Provisional	99.05
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.05
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.04
KOG4300|consensus	252		99.04
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.04
KOG2915|consensus	314		99.03
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.03
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.03
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.03
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.01
KOG2915|consensus	314		99.0
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.0
PHA03411	279	putative methyltransferase; Provisional	99.0
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.99
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.99
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.98
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.98
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.97
PRK01581	374	speE spermidine synthase; Validated	98.97
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.97
PLN02366	308	spermidine synthase	98.97
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.96
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.96
COG4123	248	Predicted O-methyltransferase [General function pr	98.96
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.96
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.95
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.95
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.95
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.95
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	98.94
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.93
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.93
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.93
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	98.93
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.92
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.92
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.92
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.91
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.9
PLN02476	278	O-methyltransferase	98.9
PTZ00146	293	fibrillarin; Provisional	98.89
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.88
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.88
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.88
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.87
KOG2361|consensus	264		98.87
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.87
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.86
PRK03612	521	spermidine synthase; Provisional	98.86
COG4122	219	Predicted O-methyltransferase [General function pr	98.86
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.85
KOG3191|consensus	209		98.85
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.85
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.84
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.84
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.84
KOG3420|consensus	185		98.84
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.84
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.84
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.83
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	98.83
KOG2899|consensus	288		98.83
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.83
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.83
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.83
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.83
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.83
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.82
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.82
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.82
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.82
KOG2940|consensus	325		98.82
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.82
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.81
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.81
KOG1663|consensus	237		98.81
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.8
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.79
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.79
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.78
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.77
PLN02244	340	tocopherol O-methyltransferase	98.77
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.76
COG2521	287	Predicted archaeal methyltransferase [General func	98.76
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.76
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	98.75
KOG3010|consensus	261		98.74
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.74
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.74
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.74
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.73
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.73
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.73
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.71
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.71
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.71
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.7
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.7
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.7
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.69
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.68
PRK04457	262	spermidine synthase; Provisional	98.68
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.68
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.67
PRK08317	241	hypothetical protein; Provisional	98.67
KOG1661|consensus	237		98.66
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.66
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.66
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.64
PLN02823	336	spermine synthase	98.64
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.64
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.64
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.63
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.63
PLN02490	340	MPBQ/MSBQ methyltransferase	98.62
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.62
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.62
KOG1499|consensus	346		98.62
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.62
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.62
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.61
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.6
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.6
KOG1975|consensus	389		98.6
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.6
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.59
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.58
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.58
PRK14967	223	putative methyltransferase; Provisional	98.56
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.56
KOG1122|consensus	460		98.55
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.55
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.55
COG2890	280	HemK Methylase of polypeptide chain release factor	98.55
COG2520	341	Predicted methyltransferase [General function pred	98.54
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.53
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.53
PRK11207	197	tellurite resistance protein TehB; Provisional	98.53
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.52
PLN03075	296	nicotianamine synthase; Provisional	98.52
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.51
PRK04148	134	hypothetical protein; Provisional	98.51
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.51
KOG0820|consensus	315		98.51
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.5
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.5
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.49
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.49
TIGR00438	188	rrmJ cell division protein FtsJ.	98.49
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.49
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.47
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.46
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.46
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.46
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.45
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.44
KOG1500|consensus	517		98.43
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.42
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.42
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.42
PRK14968	188	putative methyltransferase; Provisional	98.41
KOG1270|consensus	282		98.41
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.4
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.4
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.39
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.39
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.38
PRK06922	677	hypothetical protein; Provisional	98.38
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.37
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.37
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.37
PRK00536	262	speE spermidine synthase; Provisional	98.37
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.36
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.36
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.35
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.34
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.33
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.33
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.33
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.32
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.32
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.3
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.29
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.29
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.28
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.27
PHA03411	279	putative methyltransferase; Provisional	98.26
PRK00811	283	spermidine synthase; Provisional	98.25
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.25
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.24
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.23
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.23
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.22
PRK01581	374	speE spermidine synthase; Validated	98.22
PRK12335	287	tellurite resistance protein TehB; Provisional	98.22
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.21
PHA03412	241	putative methyltransferase; Provisional	98.21
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.21
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.2
KOG1541|consensus	270		98.2
KOG1540|consensus	296		98.2
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.2
KOG0820|consensus	315		98.18
PRK06202	232	hypothetical protein; Provisional	98.18
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.17
KOG2899|consensus	288		98.17
TIGR03438	301	probable methyltransferase. This model represents	98.17
PRK05785	226	hypothetical protein; Provisional	98.15
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.14
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.13
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.12
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.11
KOG2187|consensus	534		98.11
KOG3420|consensus	185		98.11
KOG2352|consensus	482		98.09
PLN02366	308	spermidine synthase	98.09
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	98.09
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.08
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.08
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.07
COG2521	287	Predicted archaeal methyltransferase [General func	98.07
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	98.05
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.05
KOG1596|consensus	317		98.04
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.04
PRK03612	521	spermidine synthase; Provisional	98.02
KOG2904|consensus	328		98.02
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.01
KOG1663|consensus	237		98.0
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.0
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.99
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	97.99
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.99
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	97.98
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	97.95
PLN02672	1082	methionine S-methyltransferase	97.95
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	97.94
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	97.93
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.92
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.92
KOG3010|consensus	261		97.9
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	97.9
PRK13256	226	thiopurine S-methyltransferase; Reviewed	97.86
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	97.86
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.85
KOG3045|consensus	325		97.84
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.82
PF13679	141	Methyltransf_32: Methyltransferase domain	97.81
KOG2198|consensus	375		97.8
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.8
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.8
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	97.79
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	97.79
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	97.78
COG1041	347	Predicted DNA modification methylase [DNA replicat	97.76
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.75
COG3897	218	Predicted methyltransferase [General function pred	97.74
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.74
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	97.73
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.73
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	97.72
PRK04148	134	hypothetical protein; Provisional	97.71
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	97.71
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.7
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	97.69
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	97.68
COG4076	252	Predicted RNA methylase [General function predicti	97.68
KOG1709|consensus	271		97.68
KOG1271|consensus	227		97.67
KOG3191|consensus	209		97.63
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	97.62
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.61
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.59
KOG1269|consensus	364		97.57
PRK10742	250	putative methyltransferase; Provisional	97.57
KOG2730|consensus	263		97.56
KOG4589|consensus	232		97.55
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	97.55
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.55
KOG1122|consensus	460		97.51
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	97.49
COG4798	238	Predicted methyltransferase [General function pred	97.49
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.46
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.45
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.41
KOG2187|consensus	534		97.41
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.39
PRK11524	284	putative methyltransferase; Provisional	97.38
COG4076	252	Predicted RNA methylase [General function predicti	97.38
KOG2730|consensus	263		97.36
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.35
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.34
KOG3115|consensus	249		97.27
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.23
KOG1331|consensus	293		97.22
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.2
KOG2361|consensus	264		97.17
KOG4300|consensus	252		97.16
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.15
PLN02823	336	spermine synthase	97.15
COG2520	341	Predicted methyltransferase [General function pred	97.14
KOG3178|consensus	342		97.14
KOG3115|consensus	249		97.11
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	97.1
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	97.09
PRK13699	227	putative methylase; Provisional	97.09
KOG1596|consensus	317		97.07
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.06
COG0742	187	N6-adenine-specific methylase [DNA replication, re	97.03
PF13679	141	Methyltransf_32: Methyltransferase domain	97.02
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.0
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	96.99
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	96.97
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	96.95
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	96.94
KOG3987|consensus	288		96.92
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	96.89
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.85
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.84
COG0286	489	HsdM Type I restriction-modification system methyl	96.83
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	96.82
KOG2198|consensus	375		96.81
KOG2671|consensus	421		96.8
KOG1499|consensus	346		96.79
KOG4589|consensus	232		96.72
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	96.68
KOG1975|consensus	389		96.68
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	96.68
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	96.67
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	96.63
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	96.56
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.55
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	96.54
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	96.4
PHA01634	156	hypothetical protein	96.35
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	96.32
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	96.26
KOG1500|consensus	517		96.24
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	96.2
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	96.16
KOG1562|consensus	337		96.16
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.15
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.15
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.09
KOG0024|consensus	354		96.03
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.0
COG3129	292	Predicted SAM-dependent methyltransferase [General	96.0
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	95.99
COG4798	238	Predicted methyltransferase [General function pred	95.92
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	95.92
KOG4058|consensus	199		95.86
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	95.84
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	95.8
KOG1253|consensus	525		95.7
PRK10742	250	putative methyltransferase; Provisional	95.64
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	95.59
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	95.55

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2e-31  Score=234.65  Aligned_cols=196  Identities=36%  Similarity=0.613  Sum_probs=183.4

Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCC----CCCCCcccccCCCcccchhHHHHHHHHHHhhcCCCCCEEEEEc
Q psy7829          66 TDLVNHLRDIGKIRTERVAQAFYKVDRGNFANE----EPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLG  141 (511)
Q Consensus        66 ~~l~~~l~~~~~~~~~~~~~a~~~~~r~~~~~~----~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG  141 (511)
                      ..+.++|+..++ .++.+.+||..+||+.|+|.    .+|.|.++++++++++++|+++++++++|.  ++++.+|||||
T Consensus         4 ~~l~~~lr~~~i-~~~~v~~A~~~vPRe~FVp~~~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~--~~~g~~VLEIG   80 (209)
T COG2518           4 RMLVERLRTEGI-TDERVLKAFLAVPRELFVPAAYKHLAYEDRALPIGCGQTISAPHMVARMLQLLE--LKPGDRVLEIG   80 (209)
T ss_pred             HHHHHHHHHcCC-CcHHHHHHHHhCCHHhccCchhhcccccCCcccCCCCceecCcHHHHHHHHHhC--CCCCCeEEEEC
Confidence            568899999996 56999999999999999996    499999999999999999999999999998  99999999999


Q ss_pred             CCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCCchH
Q psy7829         142 SGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVP  221 (511)
Q Consensus       142 ~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~  221 (511)
                      |||||.++.+|+..+   +|+++|+.+...+.|++|++..     +..||.++++|...++++.++||.|++......+|
T Consensus        81 tGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~l-----g~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP  152 (209)
T COG2518          81 TGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETL-----GYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVP  152 (209)
T ss_pred             CCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHc-----CCCceEEEECCcccCCCCCCCcCEEEEeeccCCCC
Confidence            999999999999974   6999999999999999999995     57789999999999998889999999999999999


Q ss_pred             HHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEeccc
Q psy7829         222 SRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMR  273 (511)
Q Consensus       222 ~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  273 (511)
                      +.+.++|||||++++|++ ....+.+.++.+..++.+..+..+.+.|+|+.+
T Consensus       153 ~~Ll~QL~~gGrlv~PvG-~~~~q~l~~~~k~~~~~~~~~~l~~v~~vPl~~  203 (209)
T COG2518         153 EALLDQLKPGGRLVIPVG-SGPAQRLLRITKDGDGNFERRDLFNVRFVPLVG  203 (209)
T ss_pred             HHHHHhcccCCEEEEEEc-cCCcEEEEEEEEcCCCcEEEeeeccceeeecCC
Confidence            999999999999999999 556788899999888899999999999999987

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=100.00  E-value=1.3e-31  Score=242.40  Aligned_cols=203  Identities=37%  Similarity=0.648  Sum_probs=175.2

Q ss_pred             cHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCC----CCCCCcccccCCCcccchhHHHHHHHHHHhhcCCCCCEEEE
Q psy7829          64 CQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANE----EPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLD  139 (511)
Q Consensus        64 ~~~~l~~~l~~~~~~~~~~~~~a~~~~~r~~~~~~----~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~vLD  139 (511)
                      ++..|+++|+..+.+.++.+.+||+.+||+.|+|.    .+|.|.+++++.++++++|.+++.+++.|.  +++|.+|||
T Consensus         1 ~~~~lv~~l~~~g~v~~~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~--l~pg~~VLe   78 (209)
T PF01135_consen    1 SNKALVDNLIRPGDVTDPRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEALD--LKPGDRVLE   78 (209)
T ss_dssp             CHHHHHHHHHHTTSS-SHHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTT--C-TT-EEEE
T ss_pred             CHHHHHHHHHHcCCCCCHHHHHHHHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHHh--cCCCCEEEE
Confidence            46789999999997899999999999999999998    599999999999999999999999999998  999999999


Q ss_pred             EcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCCc
Q psy7829         140 LGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSE  219 (511)
Q Consensus       140 iG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~  219 (511)
                      ||||+||.+..+++..++.++|+++|+++.+++.|++++...     +..|+.++++|...+++..++||.|+++..++.
T Consensus        79 IGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~-----~~~nv~~~~gdg~~g~~~~apfD~I~v~~a~~~  153 (209)
T PF01135_consen   79 IGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL-----GIDNVEVVVGDGSEGWPEEAPFDRIIVTAAVPE  153 (209)
T ss_dssp             ES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH-----TTHSEEEEES-GGGTTGGG-SEEEEEESSBBSS
T ss_pred             ecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh-----ccCceeEEEcchhhccccCCCcCEEEEeeccch
Confidence            999999999999999988889999999999999999999986     466999999999888877789999999999999


Q ss_pred             hHHHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEecccc
Q psy7829         220 VPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRK  274 (511)
Q Consensus       220 ~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  274 (511)
                      ++..+.++||+||+|++++.. ...+.+..+.+..++.+.....+.|.|+||.+.
T Consensus       154 ip~~l~~qL~~gGrLV~pi~~-~~~~~l~~~~k~~~g~~~~~~~~~~~fvpl~~~  207 (209)
T PF01135_consen  154 IPEALLEQLKPGGRLVAPIGQ-GGSQRLVRITKKGDGEFSREELFPVRFVPLVGG  207 (209)
T ss_dssp             --HHHHHTEEEEEEEEEEESS-SSSEEEEEEEEETTTEEEEEEEEEE---B-BSC
T ss_pred             HHHHHHHhcCCCcEEEEEEcc-CCceEEEEEEEeCCCcEEEEEEeeEEEEeccCC
Confidence            999999999999999999998 778899999999889999999999999999864

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>KOG1661|consensus

Probab=99.97  E-value=4.6e-30  Score=220.86  Aligned_cols=224  Identities=42%  Similarity=0.669  Sum_probs=205.9

Q ss_pred             cccCCCccHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCC----CCCCCcccccCCCcccchhHHHHHHHHHHhhcCC
Q psy7829          57 HFKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANE----EPYQDVSASLGYAGVMNAPNQIADAAENLKLHLV  132 (511)
Q Consensus        57 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~a~~~~~r~~~~~~----~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~  132 (511)
                      -|..++.++.+|+++|+..++++...+.+||+.++|..|.|.    .+|.|.++.++++.++++|++++.+++.|..+++
T Consensus         2 ~~~s~gs~n~~LId~L~~~~~Ir~~~v~~A~~a~dR~dy~p~~~~~n~y~d~pq~~G~n~~iSAp~mha~~le~L~~~L~   81 (237)
T KOG1661|consen    2 GWVSSGSDNDDLIDNLRENKIIRTRRVEQAMRATDRSDYAPRSERTNPYMDSPQKIGYNLTISAPHMHATALEYLDDHLQ   81 (237)
T ss_pred             CccccCcchHHHHHHHHhcchhHHHHHHHHHHhhchhhccccccccCCCCCCccccCCceEEcchHHHHHHHHHHHHhhc
Confidence            466778999999999999999999999999999999999998    8999999999999999999999999999998999


Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceE-EEEeCCHHHHHHHHHHHhccC-----CCcCCCCCeEEEEccCCCCCCCCC
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKV-IGVEHIPELIEASLRNISKGN-----KDLLDSGRVRIVEADAREGYLPEA  206 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v-~~iD~~~~~~~~a~~~~~~~~-----~~~~~~~~v~~~~~d~~~~~~~~~  206 (511)
                      ||.++||+|+|||+++..+++.+++.+.+ +|||..++.++.+++|+.+.-     ...+...++.++.+|....+.+..
T Consensus        82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a  161 (237)
T KOG1661|consen   82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQA  161 (237)
T ss_pred             cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccC
Confidence            99999999999999999999888776654 999999999999999998753     112445678999999999888889


Q ss_pred             CccEEEecCCCCchHHHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEecccccccccc
Q psy7829         207 PYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDI  280 (511)
Q Consensus       207 ~fD~I~~~~~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  280 (511)
                      +||.|++.+....+++++.++|+|||+++++++..+..+.++...+..++.......+++.|+|+.+...+|..
T Consensus       162 ~YDaIhvGAaa~~~pq~l~dqL~~gGrllip~~~~~~~q~~~~~dk~~~gki~~~~~f~v~yvPlt~~~~q~~~  235 (237)
T KOG1661|consen  162 PYDAIHVGAAASELPQELLDQLKPGGRLLIPVGQDGGTQYLRQIDKNEDGKIKLRTLFSVRYVPLTSRESQPSR  235 (237)
T ss_pred             CcceEEEccCccccHHHHHHhhccCCeEEEeecccCceeEEEeecccccCceeeeEeeceEEEeccccccccCC
Confidence            99999999999999999999999999999999998999999999999889999999999999999998888764

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.96  E-value=3.9e-27  Score=216.40  Aligned_cols=200  Identities=34%  Similarity=0.592  Sum_probs=179.4

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCC----CCCCcccccCCCcccchhHHHHHHHHHHhhcCCCCCEEEEE
Q psy7829          65 QTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEE----PYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDL  140 (511)
Q Consensus        65 ~~~l~~~l~~~~~~~~~~~~~a~~~~~r~~~~~~~----~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~vLDi  140 (511)
                      +..+++++...+.+.++.+.+||+.+||+.|+|..    +|.|.+++++.+.++++|.+.+.+++.+.  ++++.+|||+
T Consensus         6 ~~~~v~~l~~~~~v~~~~v~~a~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~~~~~p~~~~~~~~~l~--~~~g~~VLdI   83 (212)
T PRK13942          6 KRRVIEELIREGYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIMCELLD--LKEGMKVLEI   83 (212)
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHcCCHhhcCCchhhhcCcCCCCccCCCCCEeCcHHHHHHHHHHcC--CCCcCEEEEE
Confidence            46799999988878999999999999999999873    89999999999999999999999999987  8899999999


Q ss_pred             cCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCCch
Q psy7829         141 GSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEV  220 (511)
Q Consensus       141 G~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~  220 (511)
                      |||+|+.+..+++..++.++|+++|+++++++.++++++..+     ..+++++++|+...+...++||+|+++...+++
T Consensus        84 G~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g-----~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~~  158 (212)
T PRK13942         84 GTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG-----YDNVEVIVGDGTLGYEENAPYDRIYVTAAGPDI  158 (212)
T ss_pred             CCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCeEEEECCcccCCCcCCCcCEEEECCCcccc
Confidence            999999999999988777899999999999999999998853     568999999998766656889999999999999


Q ss_pred             HHHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEecccc
Q psy7829         221 PSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRK  274 (511)
Q Consensus       221 ~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  274 (511)
                      +..+.+.|||||+++++++..  .+.+..+.+. .+.+.....+.+.|+|+.+.
T Consensus       159 ~~~l~~~LkpgG~lvi~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~f~~~~~~  209 (212)
T PRK13942        159 PKPLIEQLKDGGIMVIPVGSY--SQELIRVEKD-NGKIIKKKLGEVAFVPLIGK  209 (212)
T ss_pred             hHHHHHhhCCCcEEEEEEcCC--CcEEEEEEEE-CCEEEEEEeccEEEEecccC
Confidence            999999999999999998754  4677777775 47899999999999999864

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.96  E-value=5.6e-27  Score=214.54  Aligned_cols=200  Identities=31%  Similarity=0.441  Sum_probs=175.2

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCC----CCCCcccccCCCcccchhHHHHHHHHHHhhcCCCCCEEEEE
Q psy7829          65 QTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEE----PYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDL  140 (511)
Q Consensus        65 ~~~l~~~l~~~~~~~~~~~~~a~~~~~r~~~~~~~----~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~vLDi  140 (511)
                      +..|+++++..+.+.++.+.+||+.+||+.|+|..    +|.|.++++..+.+++.|.+.+.+++.+.  +.++.+|||+
T Consensus         2 ~~~lv~~~~~~~~v~~~~v~~a~~~vpR~~fv~~~~~~~ay~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDi   79 (205)
T PRK13944          2 AKRLVEELVREGIIKSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVAMMCELIE--PRPGMKILEV   79 (205)
T ss_pred             HHHHHHHHHHcCCcCCHHHHHHHHhCCHhHcCChhHHhcCccCCCcccCCCCEechHHHHHHHHHhcC--CCCCCEEEEE
Confidence            35789999999877899999999999999999873    89999999999999999999999999886  7788999999


Q ss_pred             cCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCCch
Q psy7829         141 GSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEV  220 (511)
Q Consensus       141 G~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~  220 (511)
                      |||+|+.+..+++..++.++|+++|+++++++.|++++..++    ...+++++.+|+.+.++..++||+|+++.+..++
T Consensus        80 G~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~----~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~  155 (205)
T PRK13944         80 GTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG----YWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTI  155 (205)
T ss_pred             CcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCcEEEEECCcccCCccCCCccEEEEccCcchh
Confidence            999999999999988667899999999999999999998764    2346999999998766555789999999999999


Q ss_pred             HHHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEecc
Q psy7829         221 PSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIM  272 (511)
Q Consensus       221 ~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  272 (511)
                      ++++.++|+|||+|++++... ..+.+..+++. .+.+....++.|.|+|+.
T Consensus       156 ~~~l~~~L~~gG~lvi~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~f~pl~  205 (205)
T PRK13944        156 PSALVRQLKDGGVLVIPVEEG-VGQVLYKVVKR-GEKVEKRAITYVLFVPLR  205 (205)
T ss_pred             hHHHHHhcCcCcEEEEEEcCC-CceEEEEEEEe-CCEEEEEEeceEEEEecC
Confidence            999999999999999998754 34667777775 467888889999999973

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.96  E-value=8.7e-27  Score=215.41  Aligned_cols=207  Identities=33%  Similarity=0.562  Sum_probs=183.3

Q ss_pred             CccHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCC----CCCCCcccccCCCcccchhHHHHHHHHHHhhcCCCCCEE
Q psy7829          62 GTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANE----EPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKV  137 (511)
Q Consensus        62 ~~~~~~l~~~l~~~~~~~~~~~~~a~~~~~r~~~~~~----~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~v  137 (511)
                      ..++.+++++++..+.+.++.+.+||+.+||+.|.+.    .+|.+.+++++.+.++++|.+.+.+++.+.  ++++.+|
T Consensus         4 ~~~~~~~v~~~~~~~~v~~~~v~~a~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~V   81 (215)
T TIGR00080         4 ESQKKALIDKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLE--LKPGMKV   81 (215)
T ss_pred             hHHHHHHHHHHHhcCCcCCHHHHHHHHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhC--CCCcCEE
Confidence            3567899999999987799999999999999999997    489999999999999999999999999987  7899999


Q ss_pred             EEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCC
Q psy7829         138 LDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCV  217 (511)
Q Consensus       138 LDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~  217 (511)
                      ||+|||+|+.+..+++..++.++|+++|+++++++.|++++...+     .++++++++|+.+.+...++||+|+++.+.
T Consensus        82 LDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g-----~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~  156 (215)
T TIGR00080        82 LEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG-----LDNVIVIVGDGTQGWEPLAPYDRIYVTAAG  156 (215)
T ss_pred             EEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC-----CCCeEEEECCcccCCcccCCCCEEEEcCCc
Confidence            999999999999999998667889999999999999999998864     568999999998765555789999999999


Q ss_pred             CchHHHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEecccccccc
Q psy7829         218 SEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQM  278 (511)
Q Consensus       218 ~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  278 (511)
                      ..+++.+.+.|||||++++++..  ..+.+..+.+. .+.+.....+.+.|+||.+...+|
T Consensus       157 ~~~~~~~~~~L~~gG~lv~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~pl~~~~~~~  214 (215)
T TIGR00080       157 PKIPEALIDQLKEGGILVMPVGE--YLQVLKRAEKR-GGEIIIKDVEPVAFVPLVGGEGFQ  214 (215)
T ss_pred             ccccHHHHHhcCcCcEEEEEEcC--CceEEEEEEEe-CCEEEEEEeeeEEEEeCCCCccCC
Confidence            99999999999999999999876  55667777765 577889999999999998766554

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.92  E-value=2.6e-23  Score=192.06  Aligned_cols=199  Identities=32%  Similarity=0.516  Sum_probs=173.6

Q ss_pred             ccHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCC----CCCCCcccccCCCcccchhHHHHHHHHHHhhcCCCCCEEE
Q psy7829          63 TCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANE----EPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVL  138 (511)
Q Consensus        63 ~~~~~l~~~l~~~~~~~~~~~~~a~~~~~r~~~~~~----~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~vL  138 (511)
                      ..+..++++|+..+ +.++.+.++|+.+||+.|+|+    ..|.+.+.+++.+..+++|.+.+.+++.+.  +.++.+||
T Consensus         7 ~~~~~~v~~l~~~~-~~~~~~~~a~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~--~~~~~~VL   83 (212)
T PRK00312          7 ERFARLVLRLRAEG-ILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLE--LKPGDRVL   83 (212)
T ss_pred             HHHHHHHHHHHHcC-CCCHHHHHHHHcCCHhHcCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcC--CCCCCEEE
Confidence            34678999999999 589999999999999999985    489999999999999999999999999886  78899999


Q ss_pred             EEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCC
Q psy7829         139 DLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVS  218 (511)
Q Consensus       139 DiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~  218 (511)
                      |+|||+|+.+..+++..   .+|+++|+++.+++.+++++++.+     ..+++++.+|..+.+...++||+|+++..++
T Consensus        84 eiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~  155 (212)
T PRK00312         84 EIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLG-----LHNVSVRHGDGWKGWPAYAPFDRILVTAAAP  155 (212)
T ss_pred             EECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCC-----CCceEEEECCcccCCCcCCCcCEEEEccCch
Confidence            99999999999888875   269999999999999999998853     5579999999876655457899999999999


Q ss_pred             chHHHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEecccc
Q psy7829         219 EVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRK  274 (511)
Q Consensus       219 ~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  274 (511)
                      ++++.+.+.|+|||++++++. ....+.+..+.+ .++.+....++.+.|.|+.+.
T Consensus       156 ~~~~~l~~~L~~gG~lv~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~  209 (212)
T PRK00312        156 EIPRALLEQLKEGGILVAPVG-GEEQQLLTRVRK-RGGRFEREVLEEVRFVPLVKG  209 (212)
T ss_pred             hhhHHHHHhcCCCcEEEEEEc-CCCceEEEEEEE-cCCeEEEEEEccEEEEecCCC
Confidence            999999999999999999998 455666777776 466788899999999998864

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.89  E-value=9.1e-22  Score=204.22  Aligned_cols=318  Identities=16%  Similarity=0.180  Sum_probs=180.2

Q ss_pred             HHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC
Q psy7829         122 DAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG  201 (511)
Q Consensus       122 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  201 (511)
                      .+++.+.  ..++.+|||+|||+|.++..+++..   .+|+++|+++.+++.+++...       ..++++++++|+...
T Consensus        28 ~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~-------~~~~i~~~~~d~~~~   95 (475)
T PLN02336         28 EILSLLP--PYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESING-------HYKNVKFMCADVTSP   95 (475)
T ss_pred             HHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhc-------cCCceEEEEeccccc
Confidence            3445543  4467799999999999999999874   369999999999988765322       245799999998632


Q ss_pred             --CCCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEec
Q psy7829         202 --YLPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAI  271 (511)
Q Consensus       202 --~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  271 (511)
                        ..+.++||+|+++.+++++        ++++.+.|||||.+++.-........+..   ..+         +..+...
T Consensus        96 ~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~---~~~---------~~~~~~~  163 (475)
T PLN02336         96 DLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKR---KNN---------PTHYREP  163 (475)
T ss_pred             ccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccc---cCC---------CCeecCh
Confidence              2345789999999887653        36789999999999885321111100000   000         0011111


Q ss_pred             ccccccccccccccCccccccccccccchhhHHHH--hhh-------hhccCCCcccCccccCCCCCCCCCceeeecccc
Q psy7829         272 MRKALQMDIHKFQMDPVDENLFTLMDKDSDELFSE--RVW-------ELKQDPLYTTEKWIPQPPGYTTPGEITTRDKYG  342 (511)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~-------~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~  342 (511)
                      ......+..+++....................|.-  .-|       ............-+.+..+|..+++...+..|+
T Consensus       164 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~f~g  243 (475)
T PLN02336        164 RFYTKVFKECHTRDEDGNSFELSLVGCKCIGAYVKNKKNQNQICWLWQKVSSTNDKGFQRFLDNVQYKSSGILRYERVFG  243 (475)
T ss_pred             HHHHHHHHHheeccCCCCEEEEEEEEeechhhhhhccCCcceEEEEEEeecCCcchhHHHHhhhhccccccHHHHHHHhC
Confidence            11111122222222111111111111111111110  000       000000000001111113555566666666665


Q ss_pred             ccccCCCCCCCCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc--c
Q psy7829         343 RLVHGSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS--T  420 (511)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~--~  420 (511)
                      ..+...      ..-..+..++..  +.+.++.+|||||||+|..++.+++..+  .+|+|+|++++++..+.++..  .
T Consensus       244 ~~~~v~------~~v~~te~l~~~--~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS~~~l~~A~~~~~~~~  313 (475)
T PLN02336        244 EGFVST------GGLETTKEFVDK--LDLKPGQKVLDVGCGIGGGDFYMAENFD--VHVVGIDLSVNMISFALERAIGRK  313 (475)
T ss_pred             CCCCCC------chHHHHHHHHHh--cCCCCCCEEEEEeccCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhhcCC
Confidence            433322      222356667776  5677899999999999999999998764  799999999999988877654  2


Q ss_pred             cccccccccccccc--cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         421 NHIDLIANETIEII--PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       421 ~~v~~i~~d~~~~l--~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .+++++.+|.....  +..+|.++...     ++..-...-.+...+++.|+|+|.++..
T Consensus       314 ~~v~~~~~d~~~~~~~~~~fD~I~s~~-----~l~h~~d~~~~l~~~~r~LkpgG~l~i~  368 (475)
T PLN02336        314 CSVEFEVADCTKKTYPDNSFDVIYSRD-----TILHIQDKPALFRSFFKWLKPGGKVLIS  368 (475)
T ss_pred             CceEEEEcCcccCCCCCCCEEEEEECC-----cccccCCHHHHHHHHHHHcCCCeEEEEE
Confidence            35777777654321  23455544321     1111112345567788889999987754

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.87  E-value=7.3e-21  Score=195.99  Aligned_cols=329  Identities=16%  Similarity=0.118  Sum_probs=200.7

Q ss_pred             CccCCCCCCCcccccCCCcccchhHHHHHHHHHHhhc-------------------------CCCCCEEEEEcCCccHHH
Q psy7829          94 NFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLH-------------------------LVDGAKVLDLGSGSGYQT  148 (511)
Q Consensus        94 ~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~-------------------------~~~~~~vLDiG~G~G~~~  148 (511)
                      .......|.+..|.++.++.+++|.+...+-..+...                         ..++.+|||+|||+|.++
T Consensus        74 YI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~ia  153 (506)
T PRK01544         74 YITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIA  153 (506)
T ss_pred             HHhCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHH
Confidence            3444568899999999999999998766554433211                         013468999999999999


Q ss_pred             HHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCC----------
Q psy7829         149 CVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVS----------  218 (511)
Q Consensus       149 ~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~----------  218 (511)
                      +.++... +..+|+++|+|+.+++.|++|+..++    ..++++++++|+.+... .++||+|++++++-          
T Consensus       154 i~la~~~-p~~~v~avDis~~al~~A~~N~~~~~----l~~~v~~~~~D~~~~~~-~~~fDlIvsNPPYi~~~~~~~l~~  227 (506)
T PRK01544        154 ISLLCEL-PNANVIATDISLDAIEVAKSNAIKYE----VTDRIQIIHSNWFENIE-KQKFDFIVSNPPYISHSEKSEMAI  227 (506)
T ss_pred             HHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcC----CccceeeeecchhhhCc-CCCccEEEECCCCCCchhhhhcCc
Confidence            9999886 67899999999999999999998764    24579999999865442 36799999987651          


Q ss_pred             ----------------------chHHHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeE-EEEeecc-eEEEecccc
Q psy7829         219 ----------------------EVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTL-QKTDLFE-VAYDAIMRK  274 (511)
Q Consensus       219 ----------------------~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~l~~~  274 (511)
                                            .+.+.+.+.|+|||.+++.++..+.......+.+..-... ...+..+ -+++-....
T Consensus       228 ~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~~~~  307 (506)
T PRK01544        228 ETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIESVYKDLQGHSRVILISPI  307 (506)
T ss_pred             hhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCceEEEecCCCCceEEEeccc
Confidence                                  0124567899999999998875543321111111100000 0000000 011111100


Q ss_pred             cccccccccccCccccccccccccchhhHHHHhhhhhccCCCcccCccccCCCCCCCCCceeeeccccccccCCCCCCCC
Q psy7829         275 ALQMDIHKFQMDPVDENLFTLMDKDSDELFSERVWELKQDPLYTTEKWIPQPPGYTTPGEITTRDKYGRLVHGSAPDNGP  354 (511)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (511)
                      .  ..+ .+...    ...  .-....+.+.+..+     |.                                   .+.
T Consensus       308 ~--~~r-s~~rr----~g~--~~~~~q~~~~e~~~-----p~-----------------------------------~~i  338 (506)
T PRK01544        308 N--LNR-SYARR----IGK--SLSGVQQNLLDNEL-----PK-----------------------------------YLF  338 (506)
T ss_pred             c--CCc-ceecc----CCC--CCCHHHHHHHHhhh-----hh-----------------------------------hCC
Confidence            0  000 00000    000  00001111111111     00                                   000


Q ss_pred             CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhh---cccccccccccccc
Q psy7829         355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIAN---ISTNHIDLIANETI  431 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~---~~~~~v~~i~~d~~  431 (511)
                      . .   ..      +.-..+..+||||||.|.+++.+|+.. |+..++|+|+....+.++.+.   .+..|+.++.++..
T Consensus       339 ~-~---ek------lf~~~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~  407 (506)
T PRK01544        339 S-K---EK------LVNEKRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLD  407 (506)
T ss_pred             C-H---HH------hCCCCCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence            0 0   00      122457889999999999999999987 889999999987666654433   45678888777642


Q ss_pred             cc---c-cccchhhhhcccCCc--------EEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcC
Q psy7829         432 EI---I-PHILDLCYLNLHRGA--------KVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIS  493 (511)
Q Consensus       432 ~~---l-~~~~d~i~~~l~~~~--------~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~  493 (511)
                      ..   + +..++.++.+.+..|        +++     .-.+...+++.|+|||.+...   ....+.+.+.+.+.+
T Consensus       408 ~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~-----~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~  479 (506)
T PRK01544        408 LILNDLPNNSLDGIYILFPDPWIKNKQKKKRIF-----NKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNG  479 (506)
T ss_pred             HHHHhcCcccccEEEEECCCCCCCCCCcccccc-----CHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCC
Confidence            22   2 244666666665444        555     234567888999999999877   555555555555543

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.87  E-value=1.9e-20  Score=180.59  Aligned_cols=198  Identities=29%  Similarity=0.406  Sum_probs=159.5

Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCC-----CCCCccccc-CCC---cccchhHHHHHHHHHHhhcCCCCCE
Q psy7829          66 TDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEE-----PYQDVSASL-GYA---GVMNAPNQIADAAENLKLHLVDGAK  136 (511)
Q Consensus        66 ~~l~~~l~~~~~~~~~~~~~a~~~~~r~~~~~~~-----~y~~~~~~~-~~~---~~~~~p~~~~~~~~~l~~~~~~~~~  136 (511)
                      ..++.+|+..|+ .+ .+.+||+.+||+.|+|..     .|.|.++++ ..+   ..+++|.+.+.+++.+.  ++++.+
T Consensus         8 ~~lv~~l~~~gv-~d-~vl~a~~~vpRe~Fvp~~~~~~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L~--i~~g~~   83 (322)
T PRK13943          8 EKLFWILKKYGI-SD-HIAKAFLEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGMR   83 (322)
T ss_pred             HHHHHHHHHcCC-cH-HHHHHHHcCCHHHcCCcchhhhhccCCCcccccCCCcccccCCcHHHHHHHHHhcC--CCCCCE
Confidence            678999999995 55 999999999999999973     488888775 344   47789999999999886  778999


Q ss_pred             EEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCC
Q psy7829         137 VLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGC  216 (511)
Q Consensus       137 vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~  216 (511)
                      |||+|||+|+++..+++..+..++|+++|+++++++.|+++++..+     .+++.++++|+...+...++||+|+++..
T Consensus        84 VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g-----~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g  158 (322)
T PRK13943         84 VLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG-----IENVIFVCGDGYYGVPEFAPYDVIFVTVG  158 (322)
T ss_pred             EEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEeCChhhcccccCCccEEEECCc
Confidence            9999999999999999987555789999999999999999998864     56899999998765554467999999988


Q ss_pred             CCchHHHHHhhcccCcEEEEEEccC-CCcceEEEEEEecCCeEEEEeecceEEEeccc
Q psy7829         217 VSEVPSRVLNQLKKGGRILAPIGPM-DDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMR  273 (511)
Q Consensus       217 ~~~~~~~~~~~LkpgG~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  273 (511)
                      .+.++..+.+.|+|||++++++... ...+......+. .+.+.....+.+.|++..+
T Consensus       159 ~~~ip~~~~~~LkpgG~Lvv~~~~~l~~~~~~~~~~r~-~~~~~~~~~~~~~~l~~~G  215 (322)
T PRK13943        159 VDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKK-DPYLVGNYKLETRFIKAGG  215 (322)
T ss_pred             hHHhHHHHHHhcCCCCEEEEEeCCccCCCCceEEEEec-CCCceEEEEEEeeEEcccc
Confidence            8888999999999999999987643 122333334443 4456666667777777743

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.68  E-value=3.1e-16  Score=143.41  Aligned_cols=107  Identities=28%  Similarity=0.443  Sum_probs=93.3

Q ss_pred             HHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC
Q psy7829         123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY  202 (511)
Q Consensus       123 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  202 (511)
                      +++.+.  ..+|.+|||+|||||..+..+++..+ .++|+++|+|+.|++.+++++...+     ..+++|+++|+++.+
T Consensus        43 ~i~~~~--~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~-----~~~i~fv~~dAe~LP  114 (238)
T COG2226          43 LISLLG--IKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKG-----VQNVEFVVGDAENLP  114 (238)
T ss_pred             HHHhhC--CCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccC-----ccceEEEEechhhCC
Confidence            344443  45899999999999999999999986 8999999999999999999998854     345999999999988


Q ss_pred             CCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEE
Q psy7829         203 LPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       203 ~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~  237 (511)
                      .++++||+|.+...++++      ++++.|+|||||++++.
T Consensus       115 f~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vl  155 (238)
T COG2226         115 FPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVL  155 (238)
T ss_pred             CCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEE
Confidence            888999999999988765      38999999999998874

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.66  E-value=3.9e-16  Score=144.70  Aligned_cols=108  Identities=29%  Similarity=0.513  Sum_probs=80.0

Q ss_pred             HHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC
Q psy7829         123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY  202 (511)
Q Consensus       123 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  202 (511)
                      +++.+.  ..+|.+|||+|||+|.++..+++..++.++|+++|+|+.|++.|++++...+     ..+|+++++|+++.+
T Consensus        39 ~~~~~~--~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~-----~~~i~~v~~da~~lp  111 (233)
T PF01209_consen   39 LIKLLG--LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG-----LQNIEFVQGDAEDLP  111 (233)
T ss_dssp             HHHHHT----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-------SEEEEE-BTTB--
T ss_pred             HHhccC--CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC-----CCCeeEEEcCHHHhc
Confidence            445444  6789999999999999999999998888999999999999999999998753     458999999999877


Q ss_pred             CCCCCccEEEecCCCCchH------HHHHhhcccCcEEEEE
Q psy7829         203 LPEAPYDVIYYGGCVSEVP------SRVLNQLKKGGRILAP  237 (511)
Q Consensus       203 ~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~l~~~  237 (511)
                      .++++||+|++...++.++      ++++++|||||++++.
T Consensus       112 ~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~il  152 (233)
T PF01209_consen  112 FPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVIL  152 (233)
T ss_dssp             S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEe
Confidence            7779999999998887654      7899999999999874

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.65  E-value=5.9e-15  Score=127.61  Aligned_cols=131  Identities=22%  Similarity=0.449  Sum_probs=105.7

Q ss_pred             CCCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCH---HHHHHHHhhccccccccccc
Q psy7829         352 NGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMM---DIAIESIANISTNHIDLIAN  428 (511)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~---~~~~~~~~~~~~~~v~~i~~  428 (511)
                      .+|.|++++ +++.++++.+.+++++||||||||..++.+| +.+|+++|++||.++   +.+++|.++++.+|++++.+
T Consensus        14 ~~p~TK~EI-Ral~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g   91 (187)
T COG2242          14 GGPMTKEEI-RALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEG   91 (187)
T ss_pred             CCCCcHHHH-HHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEec
Confidence            467899999 7888889999999999999999999999999 666999999999985   45556888889999999999


Q ss_pred             cccccccccchhhhhcccCCcEEEEEcCCccHH---HHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCC
Q psy7829         429 ETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYL---ATLMAHLVGPTGHVTGL---EHMMDIAIESIANIST  494 (511)
Q Consensus       429 d~~~~l~~~~d~i~~~l~~~~~vLD~~~g~g~~---~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~  494 (511)
                      ++.+.++..        ...+.+ -+|-| |.+   .......|+|+|++++.   .+++..+-+..++.|.
T Consensus        92 ~Ap~~L~~~--------~~~dai-FIGGg-~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~  153 (187)
T COG2242          92 DAPEALPDL--------PSPDAI-FIGGG-GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGG  153 (187)
T ss_pred             cchHhhcCC--------CCCCEE-EECCC-CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCC
Confidence            998887743        111222 25554 554   44566788999999987   7888888888888876

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.64  E-value=1.9e-15  Score=124.76  Aligned_cols=100  Identities=31%  Similarity=0.537  Sum_probs=82.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY  212 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~  212 (511)
                      |+.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.|++++...+    ..++++++++|+.......+.||+|+
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~i~~~~~d~~~~~~~~~~~D~v~   75 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEG----LSDRITFVQGDAEFDPDFLEPFDLVI   75 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTT----TTTTEEEEESCCHGGTTTSSCEEEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEECccccCcccCCCCCEEE
Confidence            57899999999999999999975 67899999999999999999995543    46799999999921222346799999


Q ss_pred             ecC-CCC---c------hHHHHHhhcccCcEEEEE
Q psy7829         213 YGG-CVS---E------VPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       213 ~~~-~~~---~------~~~~~~~~LkpgG~l~~~  237 (511)
                      +.. ..+   .      +.+++.+.|+|||++++.
T Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~  110 (112)
T PF12847_consen   76 CSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN  110 (112)
T ss_dssp             ECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence            988 332   1      257899999999999985

...

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.63  E-value=6.8e-15  Score=127.22  Aligned_cols=123  Identities=30%  Similarity=0.436  Sum_probs=106.4

Q ss_pred             CCcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCC
Q psy7829         110 YAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG  189 (511)
Q Consensus       110 ~~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~  189 (511)
                      .+..++.+.+.+..+..|.  ++++++++|||||||.+++.++ ..+|.++|+++|.++++++..++|+++.     +.+
T Consensus        13 ~~~p~TK~EIRal~ls~L~--~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~f-----g~~   84 (187)
T COG2242          13 EGGPMTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARF-----GVD   84 (187)
T ss_pred             CCCCCcHHHHHHHHHHhhC--CCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHh-----CCC
Confidence            3555888889998999987  8999999999999999999999 4569999999999999999999999995     588


Q ss_pred             CeEEEEccCCCCCCCCCCccEEEecCCC--CchHHHHHhhcccCcEEEEEEcc
Q psy7829         190 RVRIVEADAREGYLPEAPYDVIYYGGCV--SEVPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       190 ~v~~~~~d~~~~~~~~~~fD~I~~~~~~--~~~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      |++++.+|+.+.+....+||.||+...-  +.+++.+...|||||++++..-.
T Consensus        85 n~~vv~g~Ap~~L~~~~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~nait  137 (187)
T COG2242          85 NLEVVEGDAPEALPDLPSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAIT  137 (187)
T ss_pred             cEEEEeccchHhhcCCCCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEeec
Confidence            9999999998765544479999998773  35678999999999999996543

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=1.4e-15  Score=134.63  Aligned_cols=143  Identities=24%  Similarity=0.414  Sum_probs=111.3

Q ss_pred             cccccccccchhhHHHHhh-----hhhccCCCcccCccccCCCCCCCCCceeeeccccccccCCCCCCCCCCHHHHHHHH
Q psy7829         290 ENLFTLMDKDSDELFSERV-----WELKQDPLYTTEKWIPQPPGYTTPGEITTRDKYGRLVHGSAPDNGPSSERSIAHIL  364 (511)
Q Consensus       290 ~~~~~~~~~~~r~~~~~~~-----~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (511)
                      ...++++...+|+.|.++.     |.....|+ .+++++.+|                               ..+++|+
T Consensus        18 ~~v~~A~~~vPRe~FVp~~~~~~AY~d~~lpi-~~gqtis~P-------------------------------~~vA~m~   65 (209)
T COG2518          18 ERVLKAFLAVPRELFVPAAYKHLAYEDRALPI-GCGQTISAP-------------------------------HMVARML   65 (209)
T ss_pred             HHHHHHHHhCCHHhccCchhhcccccCCcccC-CCCceecCc-------------------------------HHHHHHH
Confidence            4556667778888888644     44444444 345555544                               7899999


Q ss_pred             HHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhh---ccccccccccccccccccccchhh
Q psy7829         365 DLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIAN---ISTNHIDLIANETIEIIPHILDLC  441 (511)
Q Consensus       365 ~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~---~~~~~v~~i~~d~~~~l~~~~d~i  441 (511)
                      +.  +.++++++||||||||||.+..+|+..   ++|+++|+..+.++.|++|   ++..||.++++|+....+..    
T Consensus        66 ~~--L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~----  136 (209)
T COG2518          66 QL--LELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE----  136 (209)
T ss_pred             HH--hCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC----
Confidence            98  999999999999999999999999998   6999999998887777655   55778999999987776642    


Q ss_pred             hhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         442 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       442 ~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                          .|-++|+ +.|+--.+...+.+.|+++|+++..
T Consensus       137 ----aPyD~I~-Vtaaa~~vP~~Ll~QL~~gGrlv~P  168 (209)
T COG2518         137 ----APYDRII-VTAAAPEVPEALLDQLKPGGRLVIP  168 (209)
T ss_pred             ----CCcCEEE-EeeccCCCCHHHHHhcccCCEEEEE
Confidence                2334455 6777777788999999999998876

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.58  E-value=2.7e-14  Score=137.01  Aligned_cols=145  Identities=17%  Similarity=0.227  Sum_probs=112.3

Q ss_pred             CCCCccCCCCCCCcccccCCCcccchhHHHHHHHHHHhhcC--CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCH
Q psy7829          91 DRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHL--VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIP  168 (511)
Q Consensus        91 ~r~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~--~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~  168 (511)
                      |-........|.+..+.++.++.+++|.+...+...+...+  .++.+|||+|||+|.++..+++.. +..+|+++|+|+
T Consensus        77 Pl~yi~g~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~  155 (284)
T TIGR03533        77 PVAYLTNEAWFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISP  155 (284)
T ss_pred             cHHHHcCCCeecCcEEEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCH
Confidence            33344445677788889998999988877666655554222  345799999999999999999986 678999999999


Q ss_pred             HHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCC------------------------------
Q psy7829         169 ELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVS------------------------------  218 (511)
Q Consensus       169 ~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~------------------------------  218 (511)
                      .+++.|++|+..++    ...+++++++|+.+..+ .++||+|++++++.                              
T Consensus       156 ~al~~A~~n~~~~~----~~~~i~~~~~D~~~~~~-~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~  230 (284)
T TIGR03533       156 DALAVAEINIERHG----LEDRVTLIQSDLFAALP-GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLV  230 (284)
T ss_pred             HHHHHHHHHHHHcC----CCCcEEEEECchhhccC-CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHH
Confidence            99999999998865    23579999999876443 35799999997651                              


Q ss_pred             -chHHHHHhhcccCcEEEEEEccC
Q psy7829         219 -EVPSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       219 -~~~~~~~~~LkpgG~l~~~~~~~  241 (511)
                       .+...+.+.|+|||++++.++..
T Consensus       231 ~~il~~a~~~L~~gG~l~~e~g~~  254 (284)
T TIGR03533       231 RRILAEAADHLNENGVLVVEVGNS  254 (284)
T ss_pred             HHHHHHHHHhcCCCCEEEEEECcC
Confidence             12356678999999999988753

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.58  E-value=3.4e-14  Score=134.94  Aligned_cols=107  Identities=25%  Similarity=0.310  Sum_probs=88.6

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      +.++.+|||+|||+|.++..+++..++.++|+|+|+|++|++.|+++......  ...++++++++|+.+.+.++++||+
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~--~~~~~i~~~~~d~~~lp~~~~sfD~  148 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK--SCYKNIEWIEGDATDLPFDDCYFDA  148 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh--ccCCCeEEEEcccccCCCCCCCEeE
Confidence            67889999999999999999999876778999999999999999887542100  0245899999999876556688999


Q ss_pred             EEecCCCCch------HHHHHhhcccCcEEEEEEc
Q psy7829         211 IYYGGCVSEV------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       211 I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~  239 (511)
                      |+++..++++      ++++.+.|||||++++...
T Consensus       149 V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~  183 (261)
T PLN02233        149 ITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDF  183 (261)
T ss_pred             EEEecccccCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence            9998888765      4789999999999988644

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.56  E-value=8.1e-14  Score=124.54  Aligned_cols=103  Identities=31%  Similarity=0.353  Sum_probs=87.4

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ++++.+|||+|||+|..+..+++.. +.++|+++|+++.+++.|+++++.++     .++++++++|+.+... .++||+
T Consensus        43 l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~-----l~~i~~~~~d~~~~~~-~~~fDl  115 (187)
T PRK00107         43 LPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELG-----LKNVTVVHGRAEEFGQ-EEKFDV  115 (187)
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcC-----CCCEEEEeccHhhCCC-CCCccE
Confidence            4568999999999999999999875 67899999999999999999998864     4569999999877444 578999


Q ss_pred             EEecCCC--CchHHHHHhhcccCcEEEEEEcc
Q psy7829         211 IYYGGCV--SEVPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       211 I~~~~~~--~~~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      |+++...  +.+.+.+.+.|||||++++..+.
T Consensus       116 V~~~~~~~~~~~l~~~~~~LkpGG~lv~~~~~  147 (187)
T PRK00107        116 VTSRAVASLSDLVELCLPLLKPGGRFLALKGR  147 (187)
T ss_pred             EEEccccCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence            9997542  35568899999999999997654

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.55  E-value=8.6e-14  Score=136.87  Aligned_cols=141  Identities=18%  Similarity=0.209  Sum_probs=109.7

Q ss_pred             ccCCCCCCCcccccCCCcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHH
Q psy7829          95 FANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEAS  174 (511)
Q Consensus        95 ~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a  174 (511)
                      ......|.+..+.+..+..+++|.....+...+. .+.++.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.|
T Consensus       214 IlG~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL~-~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~A  291 (423)
T PRK14966        214 ILGVREFYGRRFAVNPNVLIPRPETEHLVEAVLA-RLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETA  291 (423)
T ss_pred             EeeeeeecCcEEEeCCCccCCCccHHHHHHHhhh-ccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHH
Confidence            3344578888899998999998876665444443 34567799999999999999999875 678999999999999999


Q ss_pred             HHHHhccCCCcCCCCCeEEEEccCCCCC-CCCCCccEEEecCCCC-------------------------------chHH
Q psy7829         175 LRNISKGNKDLLDSGRVRIVEADAREGY-LPEAPYDVIYYGGCVS-------------------------------EVPS  222 (511)
Q Consensus       175 ~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~I~~~~~~~-------------------------------~~~~  222 (511)
                      ++|++.++      .+++++++|+.+.. +..++||+|++|+|.-                               .+.+
T Consensus       292 reNa~~~g------~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~  365 (423)
T PRK14966        292 RKNAADLG------ARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQ  365 (423)
T ss_pred             HHHHHHcC------CcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHH
Confidence            99998753      27999999986532 2235799999998761                               1124


Q ss_pred             HHHhhcccCcEEEEEEccCCC
Q psy7829         223 RVLNQLKKGGRILAPIGPMDD  243 (511)
Q Consensus       223 ~~~~~LkpgG~l~~~~~~~~~  243 (511)
                      .+.+.|+|||.+++.++..+.
T Consensus       366 ~a~~~LkpgG~lilEiG~~Q~  386 (423)
T PRK14966        366 GAPDRLAEGGFLLLEHGFDQG  386 (423)
T ss_pred             HHHHhcCCCcEEEEEECccHH
Confidence            556789999999998876544

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.55  E-value=3.9e-14  Score=123.64  Aligned_cols=102  Identities=25%  Similarity=0.432  Sum_probs=85.9

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCC--CCCcc
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLP--EAPYD  209 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD  209 (511)
                      +++.+|||+|||+|.++..+++...+.++++|+|+|+.+++.|+++++..+     .+|++|+++|+.+ ++.  .+.||
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~-----~~ni~~~~~d~~~-l~~~~~~~~D   75 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG-----LDNIEFIQGDIED-LPQELEEKFD   75 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT-----STTEEEEESBTTC-GCGCSSTTEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc-----ccccceEEeehhc-cccccCCCee
Confidence            467899999999999999999766678999999999999999999998864     5599999999987 432  17899


Q ss_pred             EEEecCCCCch------HHHHHhhcccCcEEEEEEc
Q psy7829         210 VIYYGGCVSEV------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       210 ~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~  239 (511)
                      +|++..+++++      .+++.+.|+++|.+++...
T Consensus        76 ~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~  111 (152)
T PF13847_consen   76 IIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDP  111 (152)
T ss_dssp             EEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence            99999887554      4789999999999988544

...

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.55  E-value=6.7e-13  Score=142.85  Aligned_cols=120  Identities=20%  Similarity=0.131  Sum_probs=85.5

Q ss_pred             chhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhC--------------------------------------
Q psy7829         115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVG--------------------------------------  156 (511)
Q Consensus       115 ~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~--------------------------------------  156 (511)
                      ..+.+.+.++.+.. ...++..++|.+||+|.+.+..|....                                      
T Consensus       173 l~etlAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~  251 (702)
T PRK11783        173 LKENLAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG  251 (702)
T ss_pred             CcHHHHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence            45566666665443 225688999999999999988775310                                      


Q ss_pred             ---CCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCC--CCCccEEEecCCCCch----------H
Q psy7829         157 ---PTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLP--EAPYDVIYYGGCVSEV----------P  221 (511)
Q Consensus       157 ---~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~I~~~~~~~~~----------~  221 (511)
                         ...+++|+|+++.+++.|++|+..+|    ..+.+++.++|+.+....  .++||+|++|+|+-.-          .
T Consensus       252 ~~~~~~~i~G~Did~~av~~A~~N~~~~g----~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY  327 (702)
T PRK11783        252 LAELPSKFYGSDIDPRVIQAARKNARRAG----VAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALY  327 (702)
T ss_pred             ccccCceEEEEECCHHHHHHHHHHHHHcC----CCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHH
Confidence               12369999999999999999999986    345699999998764322  2579999999987321          1


Q ss_pred             HHH---HhhcccCcEEEEEEc
Q psy7829         222 SRV---LNQLKKGGRILAPIG  239 (511)
Q Consensus       222 ~~~---~~~LkpgG~l~~~~~  239 (511)
                      ..+   .+...+|+.+++..+
T Consensus       328 ~~lg~~lk~~~~g~~~~llt~  348 (702)
T PRK11783        328 SQLGRRLKQQFGGWNAALFSS  348 (702)
T ss_pred             HHHHHHHHHhCCCCeEEEEeC
Confidence            222   333348988877544

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.55  E-value=1.6e-13  Score=115.38  Aligned_cols=115  Identities=30%  Similarity=0.411  Sum_probs=92.5

Q ss_pred             hhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEE
Q psy7829         116 APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE  195 (511)
Q Consensus       116 ~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  195 (511)
                      +..+...+++.+.  +.++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++++..+     .++++++.
T Consensus         4 ~~~~~~~~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~   75 (124)
T TIGR02469         4 KREVRALTLSKLR--LRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFG-----VSNIVIVE   75 (124)
T ss_pred             hHHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhC-----CCceEEEe
Confidence            3445666666665  6678899999999999999999987 55899999999999999999988753     45789999


Q ss_pred             ccCCCCC-CCCCCccEEEecCCCCc---hHHHHHhhcccCcEEEEEE
Q psy7829         196 ADAREGY-LPEAPYDVIYYGGCVSE---VPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       196 ~d~~~~~-~~~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~l~~~~  238 (511)
                      +|+.... ....+||.|++......   +.+.+.+.|||||.+++.+
T Consensus        76 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        76 GDAPEALEDSLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             ccccccChhhcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence            9876422 22368999999875544   5689999999999999865

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.54  E-value=8.4e-14  Score=134.80  Aligned_cols=141  Identities=18%  Similarity=0.229  Sum_probs=109.7

Q ss_pred             ccCCCCCCCcccccCCCcccchhHHHHHHHHHHhhcCC--CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHH
Q psy7829          95 FANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLV--DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIE  172 (511)
Q Consensus        95 ~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~--~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~  172 (511)
                      ......|.+..+.+..++.+++|.+...+...+...++  +..+|||+|||+|.++..+++.. +..+|+++|+|+.+++
T Consensus        93 i~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~  171 (307)
T PRK11805         93 LTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALA  171 (307)
T ss_pred             HcCcceEcCcEEEECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHH
Confidence            33445777888889888989888776665555432222  23689999999999999999986 7789999999999999


Q ss_pred             HHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCC-------------------------------chH
Q psy7829         173 ASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVS-------------------------------EVP  221 (511)
Q Consensus       173 ~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~-------------------------------~~~  221 (511)
                      .|++|++.++    ...+++++++|+.+..+ .++||+|++++|+-                               .+.
T Consensus       172 ~A~~n~~~~~----l~~~i~~~~~D~~~~l~-~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~  246 (307)
T PRK11805        172 VAEINIERHG----LEDRVTLIESDLFAALP-GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRIL  246 (307)
T ss_pred             HHHHHHHHhC----CCCcEEEEECchhhhCC-CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHH
Confidence            9999998865    23579999999876443 35799999987651                               123


Q ss_pred             HHHHhhcccCcEEEEEEccC
Q psy7829         222 SRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       222 ~~~~~~LkpgG~l~~~~~~~  241 (511)
                      +.+.+.|+|||.+++.++..
T Consensus       247 ~~a~~~L~pgG~l~~E~g~~  266 (307)
T PRK11805        247 AEAPDYLTEDGVLVVEVGNS  266 (307)
T ss_pred             HHHHHhcCCCCEEEEEECcC
Confidence            66778999999999988754

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.54  E-value=8e-14  Score=123.74  Aligned_cols=112  Identities=29%  Similarity=0.389  Sum_probs=89.3

Q ss_pred             HHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC
Q psy7829         122 DAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG  201 (511)
Q Consensus       122 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  201 (511)
                      .+++.+..  .++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.+++|++.++     ..+++++..|..+.
T Consensus        22 lL~~~l~~--~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~-----~~~v~~~~~d~~~~   93 (170)
T PF05175_consen   22 LLLDNLPK--HKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNG-----LENVEVVQSDLFEA   93 (170)
T ss_dssp             HHHHHHHH--HTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTT-----CTTEEEEESSTTTT
T ss_pred             HHHHHHhh--ccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcC-----cccccccccccccc
Confidence            45555652  278899999999999999999986 77789999999999999999999975     33499999999875


Q ss_pred             CCCCCCccEEEecCCCCc-----------hHHHHHhhcccCcEEEEEEccCC
Q psy7829         202 YLPEAPYDVIYYGGCVSE-----------VPSRVLNQLKKGGRILAPIGPMD  242 (511)
Q Consensus       202 ~~~~~~fD~I~~~~~~~~-----------~~~~~~~~LkpgG~l~~~~~~~~  242 (511)
                      .. .++||+|++++|++.           +.+...+.|||||.+++......
T Consensus        94 ~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~  144 (170)
T PF05175_consen   94 LP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHL  144 (170)
T ss_dssp             CC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred             cc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCC
Confidence            54 588999999998742           23678899999999988665443

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.54  E-value=1.4e-13  Score=129.05  Aligned_cols=111  Identities=21%  Similarity=0.391  Sum_probs=91.7

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829         121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE  200 (511)
Q Consensus       121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  200 (511)
                      ..++..+.  ++++.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++++...     ..++++++++|+..
T Consensus        35 ~~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~v~~~~~d~~~  107 (231)
T TIGR02752        35 KDTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA-----GLHNVELVHGNAME  107 (231)
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc-----CCCceEEEEechhc
Confidence            34555554  678899999999999999999998777789999999999999999998764     34689999999876


Q ss_pred             CCCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEE
Q psy7829         201 GYLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       201 ~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~  238 (511)
                      ...+.++||+|+++..++++      ++++.+.|+|||.+++..
T Consensus       108 ~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~  151 (231)
T TIGR02752       108 LPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLE  151 (231)
T ss_pred             CCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence            44455789999998777654      477899999999998743

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=1.3e-13  Score=131.36  Aligned_cols=141  Identities=21%  Similarity=0.296  Sum_probs=111.1

Q ss_pred             ccCCCCCCCcccccCCCcccchhHHHHHHHHHHhhcCCCCC-EEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHH
Q psy7829          95 FANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGA-KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEA  173 (511)
Q Consensus        95 ~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~-~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~  173 (511)
                      ......|....+.+..++.+++|.+...+...+. ...... +|||+|||||.+++.++... +..+|+++|+|+.+++.
T Consensus        72 i~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~-~~~~~~~~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~  149 (280)
T COG2890          72 ILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALA-LLLQLDKRILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALAL  149 (280)
T ss_pred             hhccCeecceeeeeCCCceecCCchHHHHHHHHH-hhhhcCCcEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHH
Confidence            3344578888889999999999987776555331 122222 79999999999999999997 77899999999999999


Q ss_pred             HHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCC-------------------------------CchHH
Q psy7829         174 SLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCV-------------------------------SEVPS  222 (511)
Q Consensus       174 a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~-------------------------------~~~~~  222 (511)
                      |++|+..++     ..++.++.+|+.....  ++||+|++|+|+                               ..+..
T Consensus       150 A~~Na~~~~-----l~~~~~~~~dlf~~~~--~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~  222 (280)
T COG2890         150 ARENAERNG-----LVRVLVVQSDLFEPLR--GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILG  222 (280)
T ss_pred             HHHHHHHcC-----CccEEEEeeecccccC--CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHH
Confidence            999999975     2677888888876554  489999999887                               11225


Q ss_pred             HHHhhcccCcEEEEEEccCCCc
Q psy7829         223 RVLNQLKKGGRILAPIGPMDDF  244 (511)
Q Consensus       223 ~~~~~LkpgG~l~~~~~~~~~~  244 (511)
                      .+.+.|+|||.+++.++..+..
T Consensus       223 ~a~~~l~~~g~l~le~g~~q~~  244 (280)
T COG2890         223 EAPDILKPGGVLILEIGLTQGE  244 (280)
T ss_pred             hhHHHcCCCcEEEEEECCCcHH
Confidence            6788999999999998866543

>PLN02244 tocopherol O-methyltransferase

Probab=99.53  E-value=1.3e-13  Score=136.00  Aligned_cols=102  Identities=18%  Similarity=0.213  Sum_probs=87.0

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEE
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVI  211 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I  211 (511)
                      .++.+|||||||+|.++..+++.+  ..+|+|+|+|+.+++.++++....+    ..++++|+++|+.+.+.++++||+|
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g----~~~~v~~~~~D~~~~~~~~~~FD~V  190 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQG----LSDKVSFQVADALNQPFEDGQFDLV  190 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEEcCcccCCCCCCCccEE
Confidence            578899999999999999999986  4589999999999999999987754    3457999999998755556899999


Q ss_pred             EecCCCCch------HHHHHhhcccCcEEEEEEc
Q psy7829         212 YYGGCVSEV------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       212 ~~~~~~~~~------~~~~~~~LkpgG~l~~~~~  239 (511)
                      ++...++++      .+++.++|||||++++...
T Consensus       191 ~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~  224 (340)
T PLN02244        191 WSMESGEHMPDKRKFVQELARVAAPGGRIIIVTW  224 (340)
T ss_pred             EECCchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            998887665      3789999999999998643

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.52  E-value=6.8e-14  Score=130.26  Aligned_cols=136  Identities=24%  Similarity=0.202  Sum_probs=104.3

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCC
Q psy7829         120 IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAR  199 (511)
Q Consensus       120 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  199 (511)
                      ...+++.+.  +++|++|||||||.|.+++.+|+.+  +.+|+|+++|+++.+.+++++...|    ...+++++..|..
T Consensus        61 ~~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~g----l~~~v~v~l~d~r  132 (283)
T COG2230          61 LDLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARG----LEDNVEVRLQDYR  132 (283)
T ss_pred             HHHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcC----CCcccEEEecccc
Confidence            334555554  8999999999999999999999997  5789999999999999999999876    3458999999987


Q ss_pred             CCCCCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEec
Q psy7829         200 EGYLPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAI  271 (511)
Q Consensus       200 ~~~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  271 (511)
                      +..   +.||.|++-.+++++        .+.+.+.|+|||++++-.-........      ....|....+|+-.+.|-
T Consensus       133 d~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~------~~~~~i~~yiFPgG~lPs  203 (283)
T COG2230         133 DFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR------RFPDFIDKYIFPGGELPS  203 (283)
T ss_pred             ccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc------cchHHHHHhCCCCCcCCC
Confidence            633   449999999988765        378999999999999853322221111      234466666777766663


Q ss_pred             c
Q psy7829         272 M  272 (511)
Q Consensus       272 ~  272 (511)
                      .
T Consensus       204 ~  204 (283)
T COG2230         204 I  204 (283)
T ss_pred             H
Confidence            3

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.52  E-value=3.3e-13  Score=122.04  Aligned_cols=118  Identities=23%  Similarity=0.339  Sum_probs=95.7

Q ss_pred             CcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCC
Q psy7829         111 AGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGR  190 (511)
Q Consensus       111 ~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~  190 (511)
                      ...++.+.+.+.+++.+.  +.++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.+++++..++     ..+
T Consensus        11 ~~~~~~~~~r~~~~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~-----~~~   82 (187)
T PRK08287         11 KVPMTKEEVRALALSKLE--LHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFG-----CGN   82 (187)
T ss_pred             CCCCchHHHHHHHHHhcC--CCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhC-----CCC
Confidence            445666667777777775  6788999999999999999999986 77899999999999999999998753     357


Q ss_pred             eEEEEccCCCCCCCCCCccEEEecCCCCc---hHHHHHhhcccCcEEEEEE
Q psy7829         191 VRIVEADAREGYLPEAPYDVIYYGGCVSE---VPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       191 v~~~~~d~~~~~~~~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~l~~~~  238 (511)
                      ++++.+|.....  .++||+|+++.....   +.+.+.+.|+|||++++..
T Consensus        83 i~~~~~d~~~~~--~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~  131 (187)
T PRK08287         83 IDIIPGEAPIEL--PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTF  131 (187)
T ss_pred             eEEEecCchhhc--CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEE
Confidence            999999875432  257999999765433   4578899999999998854

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.52  E-value=1.9e-13  Score=131.73  Aligned_cols=141  Identities=19%  Similarity=0.236  Sum_probs=107.7

Q ss_pred             CCCCCCCcccccCCCcccchhHHHHHHHHHHhhc--CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHH
Q psy7829          97 NEEPYQDVSASLGYAGVMNAPNQIADAAENLKLH--LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEAS  174 (511)
Q Consensus        97 ~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a  174 (511)
                      ....|.+..+.+..+..+++|.....+...+...  ..+..+|||+|||+|.++..++... +..+|+++|+|+.+++.|
T Consensus        76 g~~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a  154 (284)
T TIGR00536        76 GSKEFYGLEFFVNEHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVA  154 (284)
T ss_pred             CcceEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHH
Confidence            3456778888888888888886655544443321  1223689999999999999999986 678999999999999999


Q ss_pred             HHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCC-------------------------------chHHH
Q psy7829         175 LRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVS-------------------------------EVPSR  223 (511)
Q Consensus       175 ~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~-------------------------------~~~~~  223 (511)
                      ++|+..++    ...+++++++|+.+... ..+||+|++++++-                               .+...
T Consensus       155 ~~n~~~~~----~~~~v~~~~~d~~~~~~-~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~  229 (284)
T TIGR00536       155 EENAEKNQ----LEHRVEFIQSNLFEPLA-GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIEL  229 (284)
T ss_pred             HHHHHHcC----CCCcEEEEECchhccCc-CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHH
Confidence            99998864    23459999999876443 24799999986651                               12256


Q ss_pred             HHhhcccCcEEEEEEccCCC
Q psy7829         224 VLNQLKKGGRILAPIGPMDD  243 (511)
Q Consensus       224 ~~~~LkpgG~l~~~~~~~~~  243 (511)
                      +.+.|+|||.+++.++..+.
T Consensus       230 a~~~L~~gG~l~~e~g~~q~  249 (284)
T TIGR00536       230 APDYLKPNGFLVCEIGNWQQ  249 (284)
T ss_pred             HHHhccCCCEEEEEECccHH
Confidence            77899999999999886554

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.50  E-value=1.8e-13  Score=122.26  Aligned_cols=101  Identities=30%  Similarity=0.335  Sum_probs=84.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY  212 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~  212 (511)
                      ++.+|||+|||+|.++..++... +.++|+++|+++.+++.+++++++++     .++++++++|+.+. ...++||+|+
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~-----~~~i~~i~~d~~~~-~~~~~fD~I~  114 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELG-----LNNVEIVNGRAEDF-QHEEQFDVIT  114 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhC-----CCCeEEEecchhhc-cccCCccEEE
Confidence            48899999999999999998765 67899999999999999999988754     45799999998763 3347899999


Q ss_pred             ecCCCCc---hHHHHHhhcccCcEEEEEEccC
Q psy7829         213 YGGCVSE---VPSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       213 ~~~~~~~---~~~~~~~~LkpgG~l~~~~~~~  241 (511)
                      ++. ++.   +.+.+.+.|+|||.+++..+..
T Consensus       115 s~~-~~~~~~~~~~~~~~LkpgG~lvi~~~~~  145 (181)
T TIGR00138       115 SRA-LASLNVLLELTLNLLKVGGYFLAYKGKK  145 (181)
T ss_pred             ehh-hhCHHHHHHHHHHhcCCCCEEEEEcCCC
Confidence            986 443   3467899999999999876543

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.50  E-value=1.4e-13  Score=130.90  Aligned_cols=169  Identities=17%  Similarity=0.210  Sum_probs=113.4

Q ss_pred             cccCCCccHHHHHHHHHHcCCCCCHHHHHHHHhCCCC--CccCCCCCCCcccccCCCcccchhHHHHHHHHHHhhcCCCC
Q psy7829          57 HFKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRG--NFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDG  134 (511)
Q Consensus        57 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~a~~~~~r~--~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~  134 (511)
                      ++|+...+..++++.|...|+...+.-......+...  .......|..+.+.++....+    +.   ...+.  ++++
T Consensus         2 RvN~lk~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~----~~---~~~l~--~~~g   72 (264)
T TIGR00446         2 RVNTLKISVADLLQRLENRGVTLIPWCEEGFFEVNESPLPIGSTPEYLSGLYYIQEASSM----IP---PLALE--PDPP   72 (264)
T ss_pred             eecCCCCCHHHHHHHHHhCCCceeecCCCceEEEeCCCCCcccChhHhCCeEEEECHHHH----HH---HHHhC--CCCc
Confidence            4567778888999999888752111000000001100  111222344443333321111    11   22333  6789


Q ss_pred             CEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEec
Q psy7829         135 AKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYG  214 (511)
Q Consensus       135 ~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~  214 (511)
                      .+|||+|||+|..+..+++..++.+.|+++|+++.+++.+++++++++     ..++.++..|+.......+.||+|+++
T Consensus        73 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g-----~~~v~~~~~D~~~~~~~~~~fD~Vl~D  147 (264)
T TIGR00446        73 ERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG-----VLNVAVTNFDGRVFGAAVPKFDAILLD  147 (264)
T ss_pred             CEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-----CCcEEEecCCHHHhhhhccCCCEEEEc
Confidence            999999999999999999988667899999999999999999999864     457999999986533333569999999


Q ss_pred             CCCCc----------------------------hHHHHHhhcccCcEEEEEEc
Q psy7829         215 GCVSE----------------------------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       215 ~~~~~----------------------------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      .++..                            +++.+.+.|||||+|+.+.-
T Consensus       148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc  200 (264)
T TIGR00446       148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC  200 (264)
T ss_pred             CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            87631                            34677889999999998643

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.50  E-value=2.9e-13  Score=123.43  Aligned_cols=120  Identities=31%  Similarity=0.427  Sum_probs=95.8

Q ss_pred             ccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeE
Q psy7829         113 VMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVR  192 (511)
Q Consensus       113 ~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~  192 (511)
                      .++.+.+.+..+..+.  +.++.+|||+|||+|.++..+++..++.++|+++|+++.+++.+++++..++    ..+++.
T Consensus        22 ~~t~~~~r~~~l~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g----~~~~v~   95 (198)
T PRK00377         22 PMTKEEIRALALSKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG----VLNNIV   95 (198)
T ss_pred             CCCHHHHHHHHHHHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC----CCCCeE
Confidence            4566666666666665  7789999999999999999999887677899999999999999999998864    246899


Q ss_pred             EEEccCCCCCCC-CCCccEEEecCCC---CchHHHHHhhcccCcEEEEEE
Q psy7829         193 IVEADAREGYLP-EAPYDVIYYGGCV---SEVPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       193 ~~~~d~~~~~~~-~~~fD~I~~~~~~---~~~~~~~~~~LkpgG~l~~~~  238 (511)
                      ++.+|..+..+. .+.||+|+++...   ..+.+.+.+.|||||++++..
T Consensus        96 ~~~~d~~~~l~~~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  145 (198)
T PRK00377         96 LIKGEAPEILFTINEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDA  145 (198)
T ss_pred             EEEechhhhHhhcCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEe
Confidence            999998653322 3679999996543   345678899999999998754

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.49  E-value=1.4e-13  Score=130.85  Aligned_cols=103  Identities=24%  Similarity=0.355  Sum_probs=85.0

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829         121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE  200 (511)
Q Consensus       121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  200 (511)
                      ..+++.+.  ..++.+|||+|||+|.++..+++.. +..+|+|+|+|+.|++.|+++            +++++++|+.+
T Consensus        19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~~   83 (255)
T PRK14103         19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER------------GVDARTGDVRD   83 (255)
T ss_pred             HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc------------CCcEEEcChhh
Confidence            34455554  5678999999999999999999986 678999999999999998753            47889999875


Q ss_pred             CCCCCCCccEEEecCCCCchH------HHHHhhcccCcEEEEEEc
Q psy7829         201 GYLPEAPYDVIYYGGCVSEVP------SRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       201 ~~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~l~~~~~  239 (511)
                      .. ..++||+|+++.++++++      +++.+.|||||.+++.+.
T Consensus        84 ~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~  127 (255)
T PRK14103         84 WK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVP  127 (255)
T ss_pred             CC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence            43 457899999999887764      688999999999998654

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.49  E-value=7.1e-14  Score=121.81  Aligned_cols=98  Identities=27%  Similarity=0.502  Sum_probs=86.0

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      +.+..+|.|+|||+|..+..+++++ |.++++|+|.|++|++.|+++          .++++|..+|+.. +.+..+.|+
T Consensus        28 ~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~r----------lp~~~f~~aDl~~-w~p~~~~dl   95 (257)
T COG4106          28 LERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQR----------LPDATFEEADLRT-WKPEQPTDL   95 (257)
T ss_pred             ccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHh----------CCCCceecccHhh-cCCCCccch
Confidence            5577899999999999999999998 899999999999999999776          3468999999876 555678999


Q ss_pred             EEecCCCCchH------HHHHhhcccCcEEEEEEcc
Q psy7829         211 IYYGGCVSEVP------SRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       211 I~~~~~~~~~~------~~~~~~LkpgG~l~~~~~~  240 (511)
                      +++|.++++++      .++...|.|||.|.+-+..
T Consensus        96 lfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPd  131 (257)
T COG4106          96 LFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPD  131 (257)
T ss_pred             hhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCC
Confidence            99999998875      6889999999999986553

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.49  E-value=1.6e-13  Score=130.07  Aligned_cols=108  Identities=26%  Similarity=0.282  Sum_probs=83.4

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      ....+++.+.  +++|.+|||||||.|.++..+++.+  +++|+|+++|++..+.+++++.+.|    ..+++++...|.
T Consensus        50 k~~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~g----l~~~v~v~~~D~  121 (273)
T PF02353_consen   50 KLDLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAG----LEDRVEVRLQDY  121 (273)
T ss_dssp             HHHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCST----SSSTEEEEES-G
T ss_pred             HHHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEEeec
Confidence            4445555554  8899999999999999999999997  4689999999999999999999876    456899999998


Q ss_pred             CCCCCCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEE
Q psy7829         199 REGYLPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       199 ~~~~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~  237 (511)
                      .+..   .+||.|++..+++++        .+++.++|||||++++-
T Consensus       122 ~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq  165 (273)
T PF02353_consen  122 RDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ  165 (273)
T ss_dssp             GG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred             cccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence            7532   489999999888766        37899999999999874

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.49  E-value=1.4e-13  Score=139.58  Aligned_cols=180  Identities=18%  Similarity=0.214  Sum_probs=123.2

Q ss_pred             ccCCCCCCCCcccCCCccHHHHHHHHHHcCCCCCH--HHHHHHHhCC-CCCccCCCCCCCcccccCCCcccchhHHHHHH
Q psy7829          47 WVIPPPDNLNHFKNEGTCQTDLVNHLRDIGKIRTE--RVAQAFYKVD-RGNFANEEPYQDVSASLGYAGVMNAPNQIADA  123 (511)
Q Consensus        47 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~a~~~~~-r~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~  123 (511)
                      +.+.+++..+++|+...+..++.+.|...|+...+  ....++.... .........|..+.+.++...       ...+
T Consensus       157 ~~~~~~~~~~RvN~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~-------s~~~  229 (431)
T PRK14903        157 WNQEPLPTMLRVNSLAITREEVIKILAEEGTEAVPGKHSPFSLIVRKLGVNMNDSRVIKDGLATVQGES-------SQIV  229 (431)
T ss_pred             HhcCCCCeeEEeeCCcCCHHHHHHHHHHCCCeeEECCCCCceEEEcCCCCCcccChHHHCCeEEEECHH-------HHHH
Confidence            34566777889999999999999999887752111  0001110000 011111223444444433221       1122


Q ss_pred             HHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC-
Q psy7829         124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY-  202 (511)
Q Consensus       124 ~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-  202 (511)
                      ...+.  +.+|.+|||+|||+|..+.+++...++.++|+++|+++.+++.+++++++.|     ..+++++++|+.... 
T Consensus       230 ~~~l~--~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g-----~~~v~~~~~Da~~l~~  302 (431)
T PRK14903        230 PLLME--LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK-----LSSIEIKIADAERLTE  302 (431)
T ss_pred             HHHhC--CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCeEEEEECchhhhhh
Confidence            23343  6789999999999999999999998777899999999999999999999864     457999999987532 


Q ss_pred             CCCCCccEEEecCCCC----------------------------chHHHHHhhcccCcEEEEEEcc
Q psy7829         203 LPEAPYDVIYYGGCVS----------------------------EVPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       203 ~~~~~fD~I~~~~~~~----------------------------~~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      ...++||.|++++++.                            .++.++.+.|||||.+++++-+
T Consensus       303 ~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs  368 (431)
T PRK14903        303 YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT  368 (431)
T ss_pred             hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            1246799999998882                            1235778999999999987543

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=4.2e-13  Score=121.39  Aligned_cols=122  Identities=26%  Similarity=0.328  Sum_probs=105.3

Q ss_pred             CcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCC
Q psy7829         111 AGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGR  190 (511)
Q Consensus       111 ~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~  190 (511)
                      +.++..|.-.+.++..+.  +.+|.+|+|.|+|||.++..|++.+++.++|+++|+.++..+.|++|++..+    ..++
T Consensus        74 ~tQiIyPKD~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~----l~d~  147 (256)
T COG2519          74 RTQIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG----LGDR  147 (256)
T ss_pred             CCceecCCCHHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc----cccc
Confidence            445556666777788776  8999999999999999999999999999999999999999999999999975    3455


Q ss_pred             eEEEEccCCCCCCCCCCccEEEecCCCCc-hHHHHHhhcccCcEEEEEEc
Q psy7829         191 VRIVEADAREGYLPEAPYDVIYYGGCVSE-VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       191 v~~~~~d~~~~~~~~~~fD~I~~~~~~~~-~~~~~~~~LkpgG~l~~~~~  239 (511)
                      +++..+|..+.... ..||+|+.+.+-+| ..+.+.+.|||||.+++.+.
T Consensus       148 v~~~~~Dv~~~~~~-~~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P  196 (256)
T COG2519         148 VTLKLGDVREGIDE-EDVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSP  196 (256)
T ss_pred             eEEEeccccccccc-cccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcC
Confidence            99999999876655 48999999987765 66899999999999998654

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.48  E-value=1.8e-13  Score=109.08  Aligned_cols=89  Identities=24%  Similarity=0.487  Sum_probs=74.7

Q ss_pred             EEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCC
Q psy7829         138 LDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCV  217 (511)
Q Consensus       138 LDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~  217 (511)
                      ||+|||+|..+..+++.  +..+|+++|+++++++.++++....        ++.+.++|....+.++++||+|++...+
T Consensus         1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~--------~~~~~~~d~~~l~~~~~sfD~v~~~~~~   70 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNE--------GVSFRQGDAEDLPFPDNSFDVVFSNSVL   70 (95)
T ss_dssp             EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTS--------TEEEEESBTTSSSS-TT-EEEEEEESHG
T ss_pred             CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhccccc--------CchheeehHHhCccccccccccccccce
Confidence            89999999999999998  4678999999999999999987653        4679999998876677999999999888


Q ss_pred             Cch------HHHHHhhcccCcEEEE
Q psy7829         218 SEV------PSRVLNQLKKGGRILA  236 (511)
Q Consensus       218 ~~~------~~~~~~~LkpgG~l~~  236 (511)
                      +++      .+++.++|||||++++
T Consensus        71 ~~~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   71 HHLEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             GGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             eeccCHHHHHHHHHHHcCcCeEEeC
Confidence            765      3789999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.47  E-value=4.7e-13  Score=126.40  Aligned_cols=108  Identities=19%  Similarity=0.301  Sum_probs=86.7

Q ss_pred             HHHHhhcCCCCCEEEEEcCCccHHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC
Q psy7829         124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMV-GPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY  202 (511)
Q Consensus       124 ~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  202 (511)
                      ...+...+.++.+|||+|||+|..+..+++.+ .+.++++++|+|+.|++.|++++...+    ...+++++++|+.+..
T Consensus        47 ~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~----~~~~v~~~~~d~~~~~  122 (247)
T PRK15451         47 GMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK----APTPVDVIEGDIRDIA  122 (247)
T ss_pred             HHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEeCChhhCC
Confidence            33333345688999999999999999988853 367899999999999999999998754    3457999999987643


Q ss_pred             CCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEE
Q psy7829         203 LPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       203 ~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~  237 (511)
                      .  ..+|+|+++.+++++        .+++.+.|||||.+++.
T Consensus       123 ~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~  163 (247)
T PRK15451        123 I--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLS  163 (247)
T ss_pred             C--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            3  458999988776543        47899999999999985

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.47  E-value=4.3e-13  Score=136.94  Aligned_cols=178  Identities=19%  Similarity=0.233  Sum_probs=122.0

Q ss_pred             ccCCCCCCCCcccCCCccHHHHHHHHHHcCCCCCH--HHHHHHHhCC-CCCccCCCCCCCcccccCCCcccchhHHHHHH
Q psy7829          47 WVIPPPDNLNHFKNEGTCQTDLVNHLRDIGKIRTE--RVAQAFYKVD-RGNFANEEPYQDVSASLGYAGVMNAPNQIADA  123 (511)
Q Consensus        47 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~a~~~~~-r~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~  123 (511)
                      +.+.++...+++|+...+...+.+.|...|+...+  ....++.... ...+...+.|..+.+.++       ......+
T Consensus       172 ~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~q-------d~~s~l~  244 (434)
T PRK14901        172 WFNQPPSLDLRINPLRTSLEEVQAALAEAGITATPIPGLPQGLRLTGNPGSIRQLPGYEEGWWTVQ-------DRSAQLV  244 (434)
T ss_pred             HhCCCCCeEEEECCCCCCHHHHHHHHHHCCCceEECCCCCCeEEecCCCCccccChHHhCCeEEEE-------CHHHHHH
Confidence            45666777889999888998999999888752111  0011111100 001111123333333222       1122223


Q ss_pred             HHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC-
Q psy7829         124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY-  202 (511)
Q Consensus       124 ~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-  202 (511)
                      ...+.  ..+|.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++++++.|     ..+++++++|+.... 
T Consensus       245 ~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g-----~~~v~~~~~D~~~~~~  317 (434)
T PRK14901        245 APLLD--PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG-----LKSIKILAADSRNLLE  317 (434)
T ss_pred             HHHhC--CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC-----CCeEEEEeCChhhccc
Confidence            34444  6789999999999999999999988667899999999999999999999864     557999999987543 


Q ss_pred             ---CCCCCccEEEecCCCC----------------------------chHHHHHhhcccCcEEEEEE
Q psy7829         203 ---LPEAPYDVIYYGGCVS----------------------------EVPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       203 ---~~~~~fD~I~~~~~~~----------------------------~~~~~~~~~LkpgG~l~~~~  238 (511)
                         ...++||.|+++.+|.                            .++.++.+.|||||+|+.++
T Consensus       318 ~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst  384 (434)
T PRK14901        318 LKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT  384 (434)
T ss_pred             ccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence               2236899999988762                            22467889999999998764

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.46  E-value=1.2e-12  Score=121.06  Aligned_cols=124  Identities=27%  Similarity=0.347  Sum_probs=98.0

Q ss_pred             CCcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCC
Q psy7829         110 YAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG  189 (511)
Q Consensus       110 ~~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~  189 (511)
                      ...++..|.-...++..+.  +.||.+|||.|+|||.++..|++.++|.++|+.+|+.++..+.|++|++.+|    ..+
T Consensus        19 rrtQIiYpkD~~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g----l~~   92 (247)
T PF08704_consen   19 RRTQIIYPKDISYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG----LDD   92 (247)
T ss_dssp             SSS----HHHHHHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT----CCT
T ss_pred             CCcceeeCchHHHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC----CCC
Confidence            4566777878888888887  9999999999999999999999999999999999999999999999999986    466


Q ss_pred             CeEEEEccCC-CCCCC--CCCccEEEecCCCCc-hHHHHHhhc-ccCcEEEEEEc
Q psy7829         190 RVRIVEADAR-EGYLP--EAPYDVIYYGGCVSE-VPSRVLNQL-KKGGRILAPIG  239 (511)
Q Consensus       190 ~v~~~~~d~~-~~~~~--~~~fD~I~~~~~~~~-~~~~~~~~L-kpgG~l~~~~~  239 (511)
                      ++++.+.|+. +++..  ...+|.|+.+.+-+| ....+.+.| ||||++++-..
T Consensus        93 ~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP  147 (247)
T PF08704_consen   93 NVTVHHRDVCEEGFDEELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSP  147 (247)
T ss_dssp             TEEEEES-GGCG--STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred             CceeEecceecccccccccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECC
Confidence            8999999996 34421  367999999998877 568999999 89999998554

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.46  E-value=7.6e-14  Score=125.18  Aligned_cols=98  Identities=20%  Similarity=0.302  Sum_probs=82.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY  212 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~  212 (511)
                      +|.+|||+|||-|.++..+|+..   ..|+|+|+++.+++.|+.++.+.+.      ++++.+...++.....++||+|+
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv------~i~y~~~~~edl~~~~~~FDvV~  129 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGV------NIDYRQATVEDLASAGGQFDVVT  129 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccc------cccchhhhHHHHHhcCCCccEEE
Confidence            79999999999999999999974   5799999999999999999888652      36677776665444448999999


Q ss_pred             ecCCCCchH------HHHHhhcccCcEEEEEEc
Q psy7829         213 YGGCVSEVP------SRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       213 ~~~~~~~~~------~~~~~~LkpgG~l~~~~~  239 (511)
                      |..+++|++      +.+.+.+||||.++++.-
T Consensus       130 cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STi  162 (243)
T COG2227         130 CMEVLEHVPDPESFLRACAKLVKPGGILFLSTI  162 (243)
T ss_pred             EhhHHHccCCHHHHHHHHHHHcCCCcEEEEecc
Confidence            999998875      679999999999999754

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.46  E-value=5.2e-13  Score=136.03  Aligned_cols=176  Identities=18%  Similarity=0.210  Sum_probs=118.0

Q ss_pred             ccCCCCCCCCcccCCCccHHHHHHHHHHcCCCCCH-HH-HHHHHhCCCC-CccCCCCCCCcccccCCCcccchhHHHHHH
Q psy7829          47 WVIPPPDNLNHFKNEGTCQTDLVNHLRDIGKIRTE-RV-AQAFYKVDRG-NFANEEPYQDVSASLGYAGVMNAPNQIADA  123 (511)
Q Consensus        47 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~-~~a~~~~~r~-~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~  123 (511)
                      +...+++..+++|+...+..++.+.|...|+-..+ .+ ..++. ++.. .+.....|.++.+.++       ......+
T Consensus       165 ~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~iQ-------d~~s~~~  236 (427)
T PRK10901        165 ANNQRPPMWLRVNRRHHSRDAYLALLAEAGIEAFPHAVGPDAIR-LETPVPVHQLPGFAEGWVSVQ-------DAAAQLA  236 (427)
T ss_pred             HcCCCCCeEEEEcCCCCCHHHHHHHHHhCCCceeecCCCCCeEE-ECCCCCcccCchhhCceEEEE-------CHHHHHH
Confidence            45556667889999888888888888877642111 00 00110 1110 0111112333333332       2122233


Q ss_pred             HHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC-
Q psy7829         124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY-  202 (511)
Q Consensus       124 ~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-  202 (511)
                      ...+.  ..++.+|||+|||+|..+..+++.. +.++|+++|+++.+++.++++++++|     . +++++++|+.... 
T Consensus       237 ~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~g-----~-~~~~~~~D~~~~~~  307 (427)
T PRK10901        237 ATLLA--PQNGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRLG-----L-KATVIVGDARDPAQ  307 (427)
T ss_pred             HHHcC--CCCCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcC-----C-CeEEEEcCcccchh
Confidence            34444  6789999999999999999999987 44799999999999999999999864     2 4789999987532 


Q ss_pred             -CCCCCccEEEecCCCC----------------------------chHHHHHhhcccCcEEEEEEc
Q psy7829         203 -LPEAPYDVIYYGGCVS----------------------------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       203 -~~~~~fD~I~~~~~~~----------------------------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                       ...++||.|++++++.                            .++..+.+.|||||++++++.
T Consensus       308 ~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc  373 (427)
T PRK10901        308 WWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC  373 (427)
T ss_pred             hcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence             2246799999988763                            134677889999999998653

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.44  E-value=1.8e-12  Score=122.14  Aligned_cols=139  Identities=14%  Similarity=0.126  Sum_probs=100.7

Q ss_pred             CccCCCCCCCcccccCCCcccchhHHHHHHHHHHhhcC---CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHH
Q psy7829          94 NFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHL---VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPEL  170 (511)
Q Consensus        94 ~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~---~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~  170 (511)
                      .......|.+..+.+..+..++++.....+-..+. .+   .++.+|||+|||+|.++..+++.. +..+|+++|+|+.+
T Consensus        45 yi~g~~~f~g~~~~v~~~vf~pr~~Te~Lv~~~l~-~~~~~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~a  122 (251)
T TIGR03704        45 HVLGWAEFCGLRIAVDPGVFVPRRRTEFLVDEAAA-LARPRSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAA  122 (251)
T ss_pred             HhcccCeEcCeEEEECCCCcCCCccHHHHHHHHHH-hhcccCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHH
Confidence            33444577777788888877766544333222222 12   234589999999999999999886 56789999999999


Q ss_pred             HHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCC--CCCccEEEecCCCC------------------------------
Q psy7829         171 IEASLRNISKGNKDLLDSGRVRIVEADAREGYLP--EAPYDVIYYGGCVS------------------------------  218 (511)
Q Consensus       171 ~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~I~~~~~~~------------------------------  218 (511)
                      ++.|++|++.++        ++++++|+.+....  .++||+|++|+++.                              
T Consensus       123 l~~A~~N~~~~~--------~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~  194 (251)
T TIGR03704       123 VRCARRNLADAG--------GTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDV  194 (251)
T ss_pred             HHHHHHHHHHcC--------CEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHH
Confidence            999999998753        47899998753321  25799999998762                              


Q ss_pred             --chHHHHHhhcccCcEEEEEEccCC
Q psy7829         219 --EVPSRVLNQLKKGGRILAPIGPMD  242 (511)
Q Consensus       219 --~~~~~~~~~LkpgG~l~~~~~~~~  242 (511)
                        .+...+.+.|||||++++.++..+
T Consensus       195 ~~~i~~~a~~~L~~gG~l~l~~~~~~  220 (251)
T TIGR03704       195 LRRVAAGAPDWLAPGGHLLVETSERQ  220 (251)
T ss_pred             HHHHHHHHHHhcCCCCEEEEEECcch
Confidence              122456689999999999877544

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.44  E-value=9.4e-13  Score=126.59  Aligned_cols=102  Identities=34%  Similarity=0.499  Sum_probs=87.3

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ++++.+|||+|||+|..+..+++..++.++|+++|+++.+++.|+++....+     .++++++.+|+.....++++||+
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g-----~~~v~~~~~d~~~l~~~~~~fD~  149 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG-----YTNVEFRLGEIEALPVADNSVDV  149 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC-----CCCEEEEEcchhhCCCCCCceeE
Confidence            6789999999999999998888887777899999999999999999988753     46899999998764444578999


Q ss_pred             EEecCCCCc------hHHHHHhhcccCcEEEEE
Q psy7829         211 IYYGGCVSE------VPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       211 I~~~~~~~~------~~~~~~~~LkpgG~l~~~  237 (511)
                      |+++..+++      +.+++.++|||||++++.
T Consensus       150 Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~  182 (272)
T PRK11873        150 IISNCVINLSPDKERVFKEAFRVLKPGGRFAIS  182 (272)
T ss_pred             EEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEE
Confidence            999877654      347899999999999985

>KOG2904|consensus

Probab=99.44  E-value=2.2e-12  Score=116.51  Aligned_cols=149  Identities=17%  Similarity=0.194  Sum_probs=113.5

Q ss_pred             HHhCCCCCccCCCCCCCcccccCCCcccchhHHHHHH---HHHHhhc-CCCCCEEEEEcCCccHHHHHHHHHhCCCceEE
Q psy7829          87 FYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADA---AENLKLH-LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVI  162 (511)
Q Consensus        87 ~~~~~r~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~---~~~l~~~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~  162 (511)
                      +...|-+......+|.+-.+....++.|++|.+...+   ++.+.+. ...+..+||+|||+|.++..++..+ ++++|+
T Consensus        98 ~~r~PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L-~~~~v~  176 (328)
T KOG2904|consen   98 YKRMPLQYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL-PQCTVT  176 (328)
T ss_pred             HhcCChhheeccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcC-CCceEE
Confidence            3445555666677899999988999999999876654   4444321 1245689999999999999999998 589999


Q ss_pred             EEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCC----CCC-CCCCCccEEEecCCC--------------------
Q psy7829         163 GVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAR----EGY-LPEAPYDVIYYGGCV--------------------  217 (511)
Q Consensus       163 ~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~----~~~-~~~~~fD~I~~~~~~--------------------  217 (511)
                      ++|.|+.++..|.+|+.+++    ...++.+++.+.+    ... ...+++|++++|+++                    
T Consensus       177 AiD~S~~Ai~La~eN~qr~~----l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~l  252 (328)
T KOG2904|consen  177 AIDVSKAAIKLAKENAQRLK----LSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKL  252 (328)
T ss_pred             EEeccHHHHHHHHHHHHHHh----hcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchh
Confidence            99999999999999999975    4567887765544    222 234889999999887                    


Q ss_pred             ------------CchHHHHHhhcccCcEEEEEEcc
Q psy7829         218 ------------SEVPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       218 ------------~~~~~~~~~~LkpgG~l~~~~~~  240 (511)
                                  .++..-+.+.|+|||.+.+.+..
T Consensus       253 ALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~  287 (328)
T KOG2904|consen  253 ALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE  287 (328)
T ss_pred             hhccccchhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence                        01114567899999999998763

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.43  E-value=9.1e-13  Score=134.30  Aligned_cols=179  Identities=13%  Similarity=0.112  Sum_probs=118.3

Q ss_pred             ccCCCCCCCCcccCCCccHHHHHHHHHHcCCCCCH--HHHHHHHhCCCCCccCCCCCCCcccccCCCcccchhHHHHHHH
Q psy7829          47 WVIPPPDNLNHFKNEGTCQTDLVNHLRDIGKIRTE--RVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAA  124 (511)
Q Consensus        47 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~a~~~~~r~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~  124 (511)
                      +...++...+++|+...+...+.+.|...|+...+  -...++.......+.....|.++.+.++..       -...+.
T Consensus       159 ~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~-------~s~~~~  231 (426)
T TIGR00563       159 ANNQRPPMWLRINRTKHSRDEWLALLAEAGMKGFPHDLAPDAVRLETPAAVHALPGFEEGWVTVQDA-------SAQWVA  231 (426)
T ss_pred             HhCCCCCeEEEEcCCcCCHHHHHHHHHhcCCceeeCCCCCCeEEECCCCCcccCchhhCCeEEEECH-------HHHHHH
Confidence            34555667788898888888888888887753211  001111111111111222344444444322       222334


Q ss_pred             HHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-
Q psy7829         125 ENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-  203 (511)
Q Consensus       125 ~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-  203 (511)
                      ..+.  ..++.+|||+|||+|+.+..+++..+ .++|+++|+++.+++.+++|+++.|.    ..++.+..+|...... 
T Consensus       232 ~~L~--~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~----~~~v~~~~~d~~~~~~~  304 (426)
T TIGR00563       232 TWLA--PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGL----TIKAETKDGDGRGPSQW  304 (426)
T ss_pred             HHhC--CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCC----CeEEEEecccccccccc
Confidence            4454  67899999999999999999999874 78999999999999999999998752    1234456677654222 


Q ss_pred             -CCCCccEEEecCCCC----------------------------chHHHHHhhcccCcEEEEEEc
Q psy7829         204 -PEAPYDVIYYGGCVS----------------------------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       204 -~~~~fD~I~~~~~~~----------------------------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                       ..++||.|++++++.                            .++.++.+.|||||.+++++-
T Consensus       305 ~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc  369 (426)
T TIGR00563       305 AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC  369 (426)
T ss_pred             ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence             346799999987652                            134677889999999998643

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.43  E-value=1e-12  Score=124.93  Aligned_cols=108  Identities=21%  Similarity=0.314  Sum_probs=86.5

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829         121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE  200 (511)
Q Consensus       121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  200 (511)
                      ..++..+.  +.++.+|||||||+|..+..+++..  .++|+++|+|+.+++.|+++...       .+++.+.++|+..
T Consensus        42 ~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~-------~~~i~~~~~D~~~  110 (263)
T PTZ00098         42 TKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD-------KNKIEFEANDILK  110 (263)
T ss_pred             HHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc-------CCceEEEECCccc
Confidence            44555554  7789999999999999999998765  45899999999999999988653       2479999999876


Q ss_pred             CCCCCCCccEEEecCCCCc--------hHHHHHhhcccCcEEEEEEc
Q psy7829         201 GYLPEAPYDVIYYGGCVSE--------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       201 ~~~~~~~fD~I~~~~~~~~--------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      ...++++||+|++...+.+        +.+++.++|||||.+++...
T Consensus       111 ~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~  157 (263)
T PTZ00098        111 KDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY  157 (263)
T ss_pred             CCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            5445578999999665433        34788999999999998543

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.43  E-value=1e-12  Score=125.41  Aligned_cols=105  Identities=22%  Similarity=0.397  Sum_probs=85.8

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829         121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE  200 (511)
Q Consensus       121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  200 (511)
                      ..++..+.  +.++.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.|+++.          +++.++.+|+..
T Consensus        21 ~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~----------~~~~~~~~d~~~   87 (258)
T PRK01683         21 RDLLARVP--LENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL----------PDCQFVEADIAS   87 (258)
T ss_pred             HHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC----------CCCeEEECchhc
Confidence            34445443  5678999999999999999999986 6789999999999999998764          258899999875


Q ss_pred             CCCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEEc
Q psy7829         201 GYLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       201 ~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~  239 (511)
                      .. ...+||+|+++.+++++      .+++.+.|||||.+++.+.
T Consensus        88 ~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~  131 (258)
T PRK01683         88 WQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMP  131 (258)
T ss_pred             cC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence            43 34689999999988765      3789999999999998643

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.43  E-value=5e-13  Score=121.30  Aligned_cols=114  Identities=28%  Similarity=0.503  Sum_probs=87.6

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANET  430 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~  430 (511)
                      .+.|..++++++.  +.+++|++||||||||||.|..+|+.+++.++|+++|++++.++.+++++.   ..|+.++.+|.
T Consensus        55 is~P~~~a~~l~~--L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg  132 (209)
T PF01135_consen   55 ISAPSMVARMLEA--LDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDG  132 (209)
T ss_dssp             E--HHHHHHHHHH--TTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-G
T ss_pred             chHHHHHHHHHHH--HhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcch
Confidence            3578999999998  889999999999999999999999999888899999999998888777765   67888999887


Q ss_pred             cccccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         431 IEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       431 ~~~l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ....+..        .+-++|+ ++++.-.+...+.+.|++||+++..
T Consensus       133 ~~g~~~~--------apfD~I~-v~~a~~~ip~~l~~qL~~gGrLV~p  171 (209)
T PF01135_consen  133 SEGWPEE--------APFDRII-VTAAVPEIPEALLEQLKPGGRLVAP  171 (209)
T ss_dssp             GGTTGGG---------SEEEEE-ESSBBSS--HHHHHTEEEEEEEEEE
T ss_pred             hhccccC--------CCcCEEE-EeeccchHHHHHHHhcCCCcEEEEE
Confidence            6544321        2334455 7777778888899999999999875

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.43  E-value=1.6e-12  Score=118.32  Aligned_cols=104  Identities=23%  Similarity=0.210  Sum_probs=82.3

Q ss_pred             HHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC
Q psy7829         123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY  202 (511)
Q Consensus       123 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  202 (511)
                      +++.+.  ..++.+|||+|||+|..+..+++..   .+|+++|+|+.+++.++++....+     ..++++.+.|+....
T Consensus        22 l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~~~-----~~~v~~~~~d~~~~~   91 (197)
T PRK11207         22 VLEAVK--VVKPGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAAEN-----LDNLHTAVVDLNNLT   91 (197)
T ss_pred             HHHhcc--cCCCCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcC-----CCcceEEecChhhCC
Confidence            344443  4467899999999999999999863   479999999999999999887753     456899999987543


Q ss_pred             CCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEE
Q psy7829         203 LPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       203 ~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~  237 (511)
                      . .++||+|++..+++++        .+++.++|||||.+++.
T Consensus        92 ~-~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207         92 F-DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             c-CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            3 3679999998876543        36889999999997653

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.43  E-value=9e-13  Score=135.20  Aligned_cols=177  Identities=21%  Similarity=0.260  Sum_probs=119.0

Q ss_pred             ccCCCCCCCCcccCCCccHHHHHHHHHHcCCCCCHH-H-HHHHHhCCCCCccCCCCCCCcccccCCCcccchhHHHHHHH
Q psy7829          47 WVIPPPDNLNHFKNEGTCQTDLVNHLRDIGKIRTER-V-AQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAA  124 (511)
Q Consensus        47 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~-~~a~~~~~r~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~  124 (511)
                      +...++...++.|+...+...+.+.|...|+...+. + ..++ .++...+.....|.++.+.++       ......+.
T Consensus       172 ~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~~q-------d~~s~lv~  243 (444)
T PRK14902        172 SLNEPPKASIRVNTLKISVEELIEKLEEEGYEVEESLLSPEAL-VIEKGNIAGTDLFKDGLITIQ-------DESSMLVA  243 (444)
T ss_pred             HcCCCCCeEEEEcCCCCCHHHHHHHHHHcCceeEEcCCCCCeE-EEeCCCcccChHHhCceEEEE-------ChHHHHHH
Confidence            345556667788887777888888887776421110 0 0010 111111222223333333332       22222333


Q ss_pred             HHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-
Q psy7829         125 ENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-  203 (511)
Q Consensus       125 ~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-  203 (511)
                      ..+.  +.++.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++|++++|     ..+++++++|+..... 
T Consensus       244 ~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g-----~~~v~~~~~D~~~~~~~  316 (444)
T PRK14902        244 PALD--PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG-----LTNIETKALDARKVHEK  316 (444)
T ss_pred             HHhC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEeCCcccccch
Confidence            4444  6788999999999999999999987667899999999999999999999864     4569999999875421 


Q ss_pred             CCCCccEEEecCCCC----------------------------chHHHHHhhcccCcEEEEEE
Q psy7829         204 PEAPYDVIYYGGCVS----------------------------EVPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       204 ~~~~fD~I~~~~~~~----------------------------~~~~~~~~~LkpgG~l~~~~  238 (511)
                      ..++||+|++++++.                            .++..+.+.|||||.++.+.
T Consensus       317 ~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst  379 (444)
T PRK14902        317 FAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST  379 (444)
T ss_pred             hcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence            126799999998752                            13467789999999999653

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.43  E-value=1.6e-12  Score=128.14  Aligned_cols=111  Identities=17%  Similarity=0.213  Sum_probs=87.9

Q ss_pred             HHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC
Q psy7829         123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY  202 (511)
Q Consensus       123 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  202 (511)
                      +++.+.  ...+.+|||+|||+|.++..+++.. |..+|+++|+|+.+++.|++|++.++..  ...+++++..|.....
T Consensus       220 lL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~--~~~~v~~~~~D~l~~~  294 (378)
T PRK15001        220 FMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPE--ALDRCEFMINNALSGV  294 (378)
T ss_pred             HHHhCC--cccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcc--cCceEEEEEccccccC
Confidence            455553  2335699999999999999999986 7889999999999999999999876421  1247899999987544


Q ss_pred             CCCCCccEEEecCCCCc-----------hHHHHHhhcccCcEEEEEEc
Q psy7829         203 LPEAPYDVIYYGGCVSE-----------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       203 ~~~~~fD~I~~~~~~~~-----------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      . ..+||+|+++++++.           +...+.+.|+|||.+++...
T Consensus       295 ~-~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n  341 (378)
T PRK15001        295 E-PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN  341 (378)
T ss_pred             C-CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence            3 358999999998853           23678899999999999643

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.42  E-value=3.3e-12  Score=121.50  Aligned_cols=134  Identities=22%  Similarity=0.304  Sum_probs=97.3

Q ss_pred             CCCCcccccCCCcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHh
Q psy7829         100 PYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNIS  179 (511)
Q Consensus       100 ~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~  179 (511)
                      .|.+..+.+.....+++|.....+...+......+.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++.
T Consensus        54 ~~~~~~~~~~~~~~~p~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~  132 (251)
T TIGR03534        54 EFYGLDFKVSPGVLIPRPDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAA  132 (251)
T ss_pred             eEeceEEEECCCcccCCCChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHH
Confidence            34444555555555555543333222222112345689999999999999999986 67799999999999999999998


Q ss_pred             ccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCC--------------------------------chHHHHHhh
Q psy7829         180 KGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVS--------------------------------EVPSRVLNQ  227 (511)
Q Consensus       180 ~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~--------------------------------~~~~~~~~~  227 (511)
                      ..+     .++++++++|+.+.. +.++||+|++++++.                                .+.+.+.+.
T Consensus       133 ~~~-----~~~~~~~~~d~~~~~-~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~  206 (251)
T TIGR03534       133 RLG-----LDNVTFLQSDWFEPL-PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRL  206 (251)
T ss_pred             HcC-----CCeEEEEECchhccC-cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHh
Confidence            754     457999999987644 347899999987653                                123577889


Q ss_pred             cccCcEEEEEEcc
Q psy7829         228 LKKGGRILAPIGP  240 (511)
Q Consensus       228 LkpgG~l~~~~~~  240 (511)
                      |+|||.+++.++.
T Consensus       207 L~~gG~~~~~~~~  219 (251)
T TIGR03534       207 LKPGGWLLLEIGY  219 (251)
T ss_pred             cccCCEEEEEECc
Confidence            9999999997653

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK04266 fibrillarin; Provisional

Probab=99.42  E-value=3.3e-12  Score=117.83  Aligned_cols=115  Identities=27%  Similarity=0.306  Sum_probs=87.9

Q ss_pred             hHHHHHHHHHH-hhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEE
Q psy7829         117 PNQIADAAENL-KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE  195 (511)
Q Consensus       117 p~~~~~~~~~l-~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  195 (511)
                      +...+.++..+ .-.++++.+|||+|||+|.++..+++.++ .++|+++|+++.|++.+.+++..       .+|+.++.
T Consensus        55 ~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~-------~~nv~~i~  126 (226)
T PRK04266         55 SKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEE-------RKNIIPIL  126 (226)
T ss_pred             cchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhh-------cCCcEEEE
Confidence            33445555433 11367999999999999999999999884 67899999999999988877654       24799999


Q ss_pred             ccCCCCC---CCCCCccEEEecCCCCc----hHHHHHhhcccCcEEEEEEc
Q psy7829         196 ADAREGY---LPEAPYDVIYYGGCVSE----VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       196 ~d~~~~~---~~~~~fD~I~~~~~~~~----~~~~~~~~LkpgG~l~~~~~  239 (511)
                      +|+....   ....+||+|+++...++    +++++.+.|||||.+++.+.
T Consensus       127 ~D~~~~~~~~~l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~  177 (226)
T PRK04266        127 ADARKPERYAHVVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAIK  177 (226)
T ss_pred             CCCCCcchhhhccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            9986421   11256999998765432    35789999999999999654

>KOG1540|consensus

Probab=99.41  E-value=2.1e-12  Score=115.60  Aligned_cols=111  Identities=24%  Similarity=0.277  Sum_probs=90.1

Q ss_pred             HHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCC-----ceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc
Q psy7829         123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPT-----GKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD  197 (511)
Q Consensus       123 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~-----~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  197 (511)
                      .+..|.  ..++.++||++||||.++..+.+.....     ++|+.+|++++|+..++++..+.+.  ....++.++++|
T Consensus        92 ~v~~L~--p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l--~~~~~~~w~~~d  167 (296)
T KOG1540|consen   92 FVSKLG--PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPL--KASSRVEWVEGD  167 (296)
T ss_pred             hhhccC--CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCC--CcCCceEEEeCC
Confidence            344454  5678999999999999999999988432     8999999999999999999876441  112349999999


Q ss_pred             CCCCCCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEE
Q psy7829         198 AREGYLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       198 ~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~  237 (511)
                      +++.+.++.+||...+...++.+      +++++++|||||++.+-
T Consensus       168 AE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cL  213 (296)
T KOG1540|consen  168 AEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCL  213 (296)
T ss_pred             cccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            99887888999999888776543      48899999999999863

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.41  E-value=7.2e-13  Score=128.36  Aligned_cols=101  Identities=15%  Similarity=0.191  Sum_probs=83.4

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEE
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVI  211 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I  211 (511)
                      .++.+|||||||+|.++..+++.   ..+|+|+|+++.+++.|++++...+    ...+++++++|+.+.....++||+|
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~----~~~~i~~~~~dae~l~~~~~~FD~V  202 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDP----VTSTIEYLCTTAEKLADEGRKFDAV  202 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcC----cccceeEEecCHHHhhhccCCCCEE
Confidence            35779999999999999999874   3579999999999999998876532    2357999999987644445789999


Q ss_pred             EecCCCCch------HHHHHhhcccCcEEEEEEc
Q psy7829         212 YYGGCVSEV------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       212 ~~~~~~~~~------~~~~~~~LkpgG~l~~~~~  239 (511)
                      ++..+++++      ++++.++|||||.+++...
T Consensus       203 i~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~  236 (322)
T PLN02396        203 LSLEVIEHVANPAEFCKSLSALTIPNGATVLSTI  236 (322)
T ss_pred             EEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence            999888765      3789999999999999754

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.41  E-value=4.2e-12  Score=130.11  Aligned_cols=175  Identities=19%  Similarity=0.169  Sum_probs=118.1

Q ss_pred             cCCCCCCCCcccCCCccHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCC-CCCCCcccccCCCcccchhHHHHHHHHH
Q psy7829          48 VIPPPDNLNHFKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANE-EPYQDVSASLGYAGVMNAPNQIADAAEN  126 (511)
Q Consensus        48 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~a~~~~~r~~~~~~-~~y~~~~~~~~~~~~~~~p~~~~~~~~~  126 (511)
                      ...++...+++|+...+...+.+.|...++...+.-...+. +... +... ..|..+.+.       .+..........
T Consensus       175 ~~~~~~~~~Rvn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~G~~~-------vqd~~s~l~~~~  245 (445)
T PRK14904        175 NNQAPLFGFRINRLKTTPEKFLAAPADASVTFEKSGLPNFF-LSKD-FSLFEPFLKLGLVS-------VQNPTQALACLL  245 (445)
T ss_pred             hCCCCCceeEeCCCCCCHHHHHHHHHhCCCceEEcCcceEE-Eecc-ccccChHHhCcEEE-------EeCHHHHHHHHh
Confidence            44455667888888888888888888766421110000000 0000 1110 122222222       222222233344


Q ss_pred             HhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCC
Q psy7829         127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEA  206 (511)
Q Consensus       127 l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  206 (511)
                      +.  ..++.+|||+|||+|..+..+++..+..++|+++|+++.+++.+++++++.|     ..+++++++|+.... +.+
T Consensus       246 l~--~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g-----~~~v~~~~~Da~~~~-~~~  317 (445)
T PRK14904        246 LN--PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG-----ITIIETIEGDARSFS-PEE  317 (445)
T ss_pred             cC--CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC-----CCeEEEEeCcccccc-cCC
Confidence            43  6688999999999999999999987667799999999999999999999864     457999999987643 346


Q ss_pred             CccEEEecCCCC----------------------------chHHHHHhhcccCcEEEEEEc
Q psy7829         207 PYDVIYYGGCVS----------------------------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       207 ~fD~I~~~~~~~----------------------------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      +||+|+++.++.                            .++.++.+.|||||++++++-
T Consensus       318 ~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc  378 (445)
T PRK14904        318 QPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC  378 (445)
T ss_pred             CCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            899999987661                            134678899999999999754

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.41  E-value=3.1e-12  Score=123.39  Aligned_cols=138  Identities=24%  Similarity=0.288  Sum_probs=103.2

Q ss_pred             CCCCCCCcccccCCCcccchhHHHHHHHHHHhh-cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Q psy7829          97 NEEPYQDVSASLGYAGVMNAPNQIADAAENLKL-HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASL  175 (511)
Q Consensus        97 ~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~-~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~  175 (511)
                      ....|.+..+.++.+..+++|.....+-..+.. ...++.+|||+|||+|.++..++... +..+++++|+++.+++.|+
T Consensus        71 g~~~f~~~~~~~~~~~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~  149 (275)
T PRK09328         71 GEAEFWGLDFKVSPGVLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVAR  149 (275)
T ss_pred             eeceEcCcEEEECCCceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHH
Confidence            334667777777777777777544333222211 24567899999999999999999987 6789999999999999999


Q ss_pred             HHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCCc--------------------------------hHHH
Q psy7829         176 RNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSE--------------------------------VPSR  223 (511)
Q Consensus       176 ~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~--------------------------------~~~~  223 (511)
                      +++.. .    ...++.++.+|+..... .++||+|++++++..                                +.++
T Consensus       150 ~n~~~-~----~~~~i~~~~~d~~~~~~-~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~  223 (275)
T PRK09328        150 RNAKH-G----LGARVEFLQGDWFEPLP-GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQ  223 (275)
T ss_pred             HHHHh-C----CCCcEEEEEccccCcCC-CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHH
Confidence            99872 1    34589999999876443 468999999876521                                1245


Q ss_pred             HHhhcccCcEEEEEEccC
Q psy7829         224 VLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       224 ~~~~LkpgG~l~~~~~~~  241 (511)
                      +.+.|+|||.+++.++..
T Consensus       224 ~~~~Lk~gG~l~~e~g~~  241 (275)
T PRK09328        224 APRYLKPGGWLLLEIGYD  241 (275)
T ss_pred             HHHhcccCCEEEEEECch
Confidence            568999999999977643

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.41  E-value=1.4e-12  Score=124.04  Aligned_cols=101  Identities=21%  Similarity=0.274  Sum_probs=83.6

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC-CCCCCccE
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY-LPEAPYDV  210 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~  210 (511)
                      .++.+|||+|||+|.++..+++..   .+|+++|+|+.+++.|++++...+    ..++++++++|+.+.. ...++||+
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g----~~~~v~~~~~d~~~l~~~~~~~fD~  115 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKG----VSDNMQFIHCAAQDIAQHLETPVDL  115 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC----CccceEEEEcCHHHHhhhcCCCCCE
Confidence            456799999999999999999863   479999999999999999988764    3467999999986532 23478999


Q ss_pred             EEecCCCCch------HHHHHhhcccCcEEEEEEc
Q psy7829         211 IYYGGCVSEV------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       211 I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~  239 (511)
                      |++..+++++      .+++.++|||||.+++.+.
T Consensus       116 V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~  150 (255)
T PRK11036        116 ILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFY  150 (255)
T ss_pred             EEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEE
Confidence            9999887654      4789999999999988644

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.41  E-value=4.1e-12  Score=115.73  Aligned_cols=121  Identities=23%  Similarity=0.311  Sum_probs=94.2

Q ss_pred             CcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCC
Q psy7829         111 AGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGR  190 (511)
Q Consensus       111 ~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~  190 (511)
                      +..++.+.+...++..+.  ..++.+|||+|||+|.++..+++.. +.++|+++|+++.+++.++++++..+     ..+
T Consensus        20 ~~p~t~~~v~~~l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~-----~~~   91 (196)
T PRK07402         20 GIPLTKREVRLLLISQLR--LEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFG-----VKN   91 (196)
T ss_pred             CCCCCHHHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC-----CCC
Confidence            344566666666777775  6788999999999999999998775 66899999999999999999998754     457


Q ss_pred             eEEEEccCCCCCCC-CCCccEEEecCCC--CchHHHHHhhcccCcEEEEEEc
Q psy7829         191 VRIVEADAREGYLP-EAPYDVIYYGGCV--SEVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       191 v~~~~~d~~~~~~~-~~~fD~I~~~~~~--~~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      ++++.+|+.+.+.. ...+|.+++....  ..+.+++.+.|+|||++++...
T Consensus        92 v~~~~~d~~~~~~~~~~~~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402         92 VEVIEGSAPECLAQLAPAPDRVCIEGGRPIKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             eEEEECchHHHHhhCCCCCCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEee
Confidence            99999998642211 1346777775432  3566899999999999998754

>TIGR00740 methyltransferase, putative

Probab=99.41  E-value=3.8e-12  Score=119.87  Aligned_cols=101  Identities=18%  Similarity=0.274  Sum_probs=83.9

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCcc
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMV-GPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYD  209 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  209 (511)
                      ..++.+|||+|||+|..+..+++.+ .+.++++|+|+|+.|++.|++++...+    ...+++++++|+.....  ..+|
T Consensus        51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~----~~~~v~~~~~d~~~~~~--~~~d  124 (239)
T TIGR00740        51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH----SEIPVEILCNDIRHVEI--KNAS  124 (239)
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEECChhhCCC--CCCC
Confidence            4578899999999999999999875 367899999999999999999987643    23479999999976433  3589


Q ss_pred             EEEecCCCCch--------HHHHHhhcccCcEEEEE
Q psy7829         210 VIYYGGCVSEV--------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       210 ~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~  237 (511)
                      +|+++.+++++        .+++.+.|||||.+++.
T Consensus       125 ~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~  160 (239)
T TIGR00740       125 MVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLS  160 (239)
T ss_pred             EEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEe
Confidence            99998877654        37889999999999985

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.40  E-value=1.5e-12  Score=119.08  Aligned_cols=107  Identities=27%  Similarity=0.366  Sum_probs=88.7

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC--CCCCc
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL--PEAPY  208 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~f  208 (511)
                      .....+|||+|||+|.+++.+|++. +..+++++|+++.+.+.|+++++.++    ..+++++++.|+.+...  ...+|
T Consensus        42 ~~~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~----l~~ri~v~~~Di~~~~~~~~~~~f  116 (248)
T COG4123          42 VPKKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNP----LEERIQVIEADIKEFLKALVFASF  116 (248)
T ss_pred             cccCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCc----chhceeEehhhHHHhhhccccccc
Confidence            4457899999999999999999997 45899999999999999999999876    67899999999975332  23579


Q ss_pred             cEEEecCCCCc------------------------hHHHHHhhcccCcEEEEEEccCC
Q psy7829         209 DVIYYGGCVSE------------------------VPSRVLNQLKKGGRILAPIGPMD  242 (511)
Q Consensus       209 D~I~~~~~~~~------------------------~~~~~~~~LkpgG~l~~~~~~~~  242 (511)
                      |+|+||+|+..                        +.+.+.+.|||||.+.+...+..
T Consensus       117 D~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~er  174 (248)
T COG4123         117 DLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPER  174 (248)
T ss_pred             CEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHH
Confidence            99999998821                        12567889999999999665443

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.40  E-value=1.8e-12  Score=118.30  Aligned_cols=102  Identities=25%  Similarity=0.296  Sum_probs=83.6

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC-CCCC--CCCCCc
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA-REGY--LPEAPY  208 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~--~~~~~f  208 (511)
                      .++.+|||+|||+|..+..+++.. +..+|+++|+|+.+++.|++++..++     .+++.++++|+ ....  ...++|
T Consensus        39 ~~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~-----~~~v~~~~~d~~~~l~~~~~~~~~  112 (202)
T PRK00121         39 NDAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEG-----LTNLRLLCGDAVEVLLDMFPDGSL  112 (202)
T ss_pred             CCCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcC-----CCCEEEEecCHHHHHHHHcCcccc
Confidence            367899999999999999999886 67789999999999999999988753     46899999998 4321  234789


Q ss_pred             cEEEecCCCC--------------chHHHHHhhcccCcEEEEEEc
Q psy7829         209 DVIYYGGCVS--------------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       209 D~I~~~~~~~--------------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      |.|+++.+.+              .+.+++.+.|||||.+++...
T Consensus       113 D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~  157 (202)
T PRK00121        113 DRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD  157 (202)
T ss_pred             ceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence            9999875432              246889999999999998654

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=1.1e-12  Score=118.80  Aligned_cols=128  Identities=28%  Similarity=0.392  Sum_probs=99.1

Q ss_pred             CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc---cc-cccccccc
Q psy7829         355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST---NH-IDLIANET  430 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~---~~-v~~i~~d~  430 (511)
                      ..|++++.++..  +.+.+|++|+|.|+|||.+|..||..++|.|+|+++|+.++.++.|.+|+..   .+ +++..+|.
T Consensus        78 IyPKD~~~I~~~--~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv  155 (256)
T COG2519          78 IYPKDAGYIVAR--LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDV  155 (256)
T ss_pred             ecCCCHHHHHHH--cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccc
Confidence            355778888887  9999999999999999999999999999999999999999999999888763   33 77777775


Q ss_pred             cccc-cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEhHHH---HHHHHHHHHhcCC
Q psy7829         431 IEII-PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHM---MDIAIESIANIST  494 (511)
Q Consensus       431 ~~~l-~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~~~m---l~~a~~~~~~~~~  494 (511)
                      .+.. +..+|.++.+++..|.++          ..+.+.|+|||.++.+...   ++..-+.+++.|+
T Consensus       156 ~~~~~~~~vDav~LDmp~PW~~l----------e~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~  213 (256)
T COG2519         156 REGIDEEDVDAVFLDLPDPWNVL----------EHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGF  213 (256)
T ss_pred             cccccccccCEEEEcCCChHHHH----------HHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence            4443 235666666666666655          7888999999999888333   3444455555555

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.39  E-value=4.2e-12  Score=115.33  Aligned_cols=104  Identities=24%  Similarity=0.269  Sum_probs=80.1

Q ss_pred             HHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC
Q psy7829         122 DAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG  201 (511)
Q Consensus       122 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  201 (511)
                      .+++.+.  ..++.+|||+|||+|..+..+++..   .+|+++|+|+.+++.+++++...+     . ++++...|....
T Consensus        21 ~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~-----~-~v~~~~~d~~~~   89 (195)
T TIGR00477        21 AVREAVK--TVAPCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKAREN-----L-PLRTDAYDINAA   89 (195)
T ss_pred             HHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhC-----C-CceeEeccchhc
Confidence            3444554  4456799999999999999999863   479999999999999999887653     2 377778887543


Q ss_pred             CCCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEE
Q psy7829         202 YLPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       202 ~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~  237 (511)
                      .. .++||+|+++.+++++        .+++.+.|||||.+++.
T Consensus        90 ~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477        90 AL-NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             cc-cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            22 3679999998777543        36889999999997664

Part of a tellurite-reducing operon tehA and tehB

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.39  E-value=9.7e-13  Score=109.36  Aligned_cols=100  Identities=29%  Similarity=0.392  Sum_probs=81.8

Q ss_pred             CCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC--CCCCCccEE
Q psy7829         134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY--LPEAPYDVI  211 (511)
Q Consensus       134 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~I  211 (511)
                      |.+|||+|||+|.++..+++..  ..+++++|+++..++.+++++...+    ..++++++++|+.+..  ...++||+|
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~D~I   74 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNG----LDDRVEVIVGDARDLPEPLPDGKFDLI   74 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCT----TTTTEEEEESHHHHHHHTCTTT-EEEE
T ss_pred             CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHcc----CCceEEEEECchhhchhhccCceeEEE
Confidence            5689999999999999999985  5789999999999999999999865    3568999999987532  345889999


Q ss_pred             EecCCCCc--------------hHHHHHhhcccCcEEEEEEc
Q psy7829         212 YYGGCVSE--------------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       212 ~~~~~~~~--------------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      ++++++..              +.+.+.+.|||||.+++.+.
T Consensus        75 v~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   75 VTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             EE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            99998842              23788999999999998653

...

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.39  E-value=2.4e-12  Score=122.25  Aligned_cols=110  Identities=15%  Similarity=0.177  Sum_probs=85.5

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      +...+++.+.  ..++.+|||+|||+|.++..+++.   ..+|+++|+|+.+++.++++..          ...++++|+
T Consensus        30 ~a~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~----------~~~~~~~d~   94 (251)
T PRK10258         30 SADALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA----------ADHYLAGDI   94 (251)
T ss_pred             HHHHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC----------CCCEEEcCc
Confidence            4444555554  345789999999999999988765   3579999999999999988743          246788998


Q ss_pred             CCCCCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEEccCCC
Q psy7829         199 REGYLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPIGPMDD  243 (511)
Q Consensus       199 ~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~~~~~  243 (511)
                      ...+..+++||+|+++.+++++      +.++.+.|||||.++++......
T Consensus        95 ~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~  145 (251)
T PRK10258         95 ESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGS  145 (251)
T ss_pred             ccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCc
Confidence            7654455789999999887654      47899999999999998665443

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=2.3e-12  Score=121.10  Aligned_cols=112  Identities=29%  Similarity=0.330  Sum_probs=85.6

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      ....+++.|....+++.+|||+|||||.+++..++..  ..+|+|+|++|.+++.|++|+..|+.    ...++....+.
T Consensus       148 TT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLG--A~~v~g~DiDp~AV~aa~eNa~~N~v----~~~~~~~~~~~  221 (300)
T COG2264         148 TTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLG--AKKVVGVDIDPQAVEAARENARLNGV----ELLVQAKGFLL  221 (300)
T ss_pred             hHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcC--CceEEEecCCHHHHHHHHHHHHHcCC----chhhhcccccc
Confidence            4556777777777899999999999999999998875  45799999999999999999999862    11222333333


Q ss_pred             CCCCCCCCCccEEEecCCCC---chHHHHHhhcccCcEEEEE
Q psy7829         199 REGYLPEAPYDVIYYGGCVS---EVPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       199 ~~~~~~~~~fD~I~~~~~~~---~~~~~~~~~LkpgG~l~~~  237 (511)
                      ... ...++||+|++|--.+   .+...+.+.|||||+++++
T Consensus       222 ~~~-~~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlS  262 (300)
T COG2264         222 LEV-PENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILS  262 (300)
T ss_pred             hhh-cccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEE
Confidence            222 2336899999986332   3347889999999999996

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=4.1e-12  Score=118.64  Aligned_cols=107  Identities=24%  Similarity=0.307  Sum_probs=88.4

Q ss_pred             HHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC
Q psy7829         123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY  202 (511)
Q Consensus       123 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  202 (511)
                      +++.+.  ...+.+|||+|||.|.+++.+++.. |..+++.+|++..+++.|++|+..++     .++..+...|..+..
T Consensus       150 Ll~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~-----~~~~~v~~s~~~~~v  221 (300)
T COG2813         150 LLETLP--PDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANG-----VENTEVWASNLYEPV  221 (300)
T ss_pred             HHHhCC--ccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcC-----CCccEEEEecccccc
Confidence            455554  3445599999999999999999997 78999999999999999999999875     344477788877655


Q ss_pred             CCCCCccEEEecCCCC-----------chHHHHHhhcccCcEEEEEEc
Q psy7829         203 LPEAPYDVIYYGGCVS-----------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       203 ~~~~~fD~I~~~~~~~-----------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      .  ++||.|++|+|+|           .+.....+.|++||.|.+...
T Consensus       222 ~--~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         222 E--GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             c--ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence            4  4899999999995           344778899999999999765

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.38  E-value=2.4e-12  Score=119.97  Aligned_cols=103  Identities=19%  Similarity=0.332  Sum_probs=86.3

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC------C
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL------P  204 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------~  204 (511)
                      ..++.+|||+|||+|+.++.+++..+++++|+++|+++++++.|+++++++|    ..++++++.+|+.+...      +
T Consensus        66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g----l~~~i~~~~gda~~~L~~l~~~~~  141 (234)
T PLN02781         66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG----VDHKINFIQSDALSALDQLLNNDP  141 (234)
T ss_pred             HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEccHHHHHHHHHhCCC
Confidence            5568899999999999999999988778999999999999999999999986    34689999999875321      1


Q ss_pred             CCCccEEEecCCC---CchHHHHHhhcccCcEEEEE
Q psy7829         205 EAPYDVIYYGGCV---SEVPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       205 ~~~fD~I~~~~~~---~~~~~~~~~~LkpgG~l~~~  237 (511)
                      .++||+|+++..-   ..+...+.+.|+|||.+++.
T Consensus       142 ~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~d  177 (234)
T PLN02781        142 KPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFD  177 (234)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            3689999998643   34557889999999998873

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.37  E-value=3e-12  Score=116.20  Aligned_cols=102  Identities=21%  Similarity=0.255  Sum_probs=84.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC---CCCCCcc
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY---LPEAPYD  209 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD  209 (511)
                      ...+|||||||+|.++..+++.. |+..++|+|+++.+++.|++++...+     ..|++++++|+...+   .+.+++|
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~-----l~ni~~i~~d~~~~~~~~~~~~~~d   89 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLG-----LKNLHVLCGDANELLDKFFPDGSLS   89 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhC-----CCCEEEEccCHHHHHHhhCCCCcee
Confidence            55689999999999999999986 78899999999999999999988753     458999999986421   2346899


Q ss_pred             EEEecCCCC--------------chHHHHHhhcccCcEEEEEEcc
Q psy7829         210 VIYYGGCVS--------------EVPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       210 ~I~~~~~~~--------------~~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      .|+++.+.+              .+.+.+.+.|||||.|++....
T Consensus        90 ~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~  134 (194)
T TIGR00091        90 KVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN  134 (194)
T ss_pred             EEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence            999986543              2567899999999999986653

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK08317 hypothetical protein; Provisional

Probab=99.36  E-value=9.6e-12  Score=117.39  Aligned_cols=110  Identities=25%  Similarity=0.436  Sum_probs=89.5

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829         121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE  200 (511)
Q Consensus       121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  200 (511)
                      ..+++.+.  +.++.+|||+|||+|.++..+++.+++.++++++|+++.+++.++++...      ...++++..+|+..
T Consensus         9 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~------~~~~~~~~~~d~~~   80 (241)
T PRK08317          9 ARTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG------LGPNVEFVRGDADG   80 (241)
T ss_pred             HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC------CCCceEEEeccccc
Confidence            34455554  67889999999999999999999876778999999999999999988433      34579999999876


Q ss_pred             CCCCCCCccEEEecCCCCc------hHHHHHhhcccCcEEEEEE
Q psy7829         201 GYLPEAPYDVIYYGGCVSE------VPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       201 ~~~~~~~fD~I~~~~~~~~------~~~~~~~~LkpgG~l~~~~  238 (511)
                      .....++||+|++...+++      +.+++.+.|||||.+++..
T Consensus        81 ~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         81 LPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             CCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence            4444578999999877754      3478999999999998854

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.36  E-value=6.7e-12  Score=130.53  Aligned_cols=107  Identities=26%  Similarity=0.378  Sum_probs=87.5

Q ss_pred             HHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC
Q psy7829         123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY  202 (511)
Q Consensus       123 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  202 (511)
                      +++.+.  +.++.+|||||||+|..+..+++..  ..+|+|+|+|+.+++.|+++...      ...+++|.++|+....
T Consensus       258 l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~------~~~~v~~~~~d~~~~~  327 (475)
T PLN02336        258 FVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIG------RKCSVEFEVADCTKKT  327 (475)
T ss_pred             HHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhc------CCCceEEEEcCcccCC
Confidence            444443  5678899999999999999999876  45899999999999999988754      2357999999988654


Q ss_pred             CCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEEc
Q psy7829         203 LPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       203 ~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~  239 (511)
                      .+.++||+|++..++.++      ++++.++|||||.+++...
T Consensus       328 ~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~  370 (475)
T PLN02336        328 YPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDY  370 (475)
T ss_pred             CCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            445789999998887654      4789999999999998643

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.36  E-value=9.2e-13  Score=106.30  Aligned_cols=90  Identities=34%  Similarity=0.641  Sum_probs=69.7

Q ss_pred             EEEEcCCccHHHHHHHHHh--CCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEec
Q psy7829         137 VLDLGSGSGYQTCVFAHMV--GPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYG  214 (511)
Q Consensus       137 vLDiG~G~G~~~~~la~~~--~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~  214 (511)
                      |||+|||+|..+..+++.+  ++..+++++|+|+++++.++++....+      .+++++++|+.+.....++||+|++.
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~------~~~~~~~~D~~~l~~~~~~~D~v~~~   74 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG------PKVRFVQADARDLPFSDGKFDLVVCS   74 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT------TTSEEEESCTTCHHHHSSSEEEEEE-
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC------CceEEEECCHhHCcccCCCeeEEEEc
Confidence            7999999999999999987  344799999999999999999987632      27999999998744345799999995


Q ss_pred             CC-CCch--------HHHHHhhcccCc
Q psy7829         215 GC-VSEV--------PSRVLNQLKKGG  232 (511)
Q Consensus       215 ~~-~~~~--------~~~~~~~LkpgG  232 (511)
                      .. ++++        .+++.+.|||||
T Consensus        75 ~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   75 GLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             CCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            43 5443        378899999998

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.35  E-value=3.3e-12  Score=118.28  Aligned_cols=134  Identities=25%  Similarity=0.371  Sum_probs=90.7

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c-ccccccccc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T-NHIDLIANE  429 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~-~~v~~i~~d  429 (511)
                      ...|+++..++..  +++.||++|||.|+|||.+|..+++.++|.|+|+++|.+++.++.|++|+.   . .++++...|
T Consensus        23 IiYpkD~~~I~~~--l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~D  100 (247)
T PF08704_consen   23 IIYPKDISYILMR--LDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRD  100 (247)
T ss_dssp             ---HHHHHHHHHH--TT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-
T ss_pred             eeeCchHHHHHHH--cCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecc
Confidence            4567889898888  999999999999999999999999999999999999999999998888876   2 467777777


Q ss_pred             ccc-cc----cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHh-CCCcEEEEhHHHHH---HHHHHHHhcCCCceEE
Q psy7829         430 TIE-II----PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLV-GPTGHVTGLEHMMD---IAIESIANISTNHIDL  499 (511)
Q Consensus       430 ~~~-~l----~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l-~~~g~v~~~~~ml~---~a~~~~~~~~~~~i~~  499 (511)
                      ..+ ..    +..+|.++.+++..|.++          ..+.+.| ++||.+..+...++   ..-+.+.+.|+..|+.
T Consensus       101 v~~~g~~~~~~~~~DavfLDlp~Pw~~i----------~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~  169 (247)
T PF08704_consen  101 VCEEGFDEELESDFDAVFLDLPDPWEAI----------PHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIET  169 (247)
T ss_dssp             GGCG--STT-TTSEEEEEEESSSGGGGH----------HHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEE
T ss_pred             eecccccccccCcccEEEEeCCCHHHHH----------HHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEE
Confidence            532 12    234555555555555444          6677888 89999988833333   3344455556544443

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.34  E-value=1.7e-11  Score=118.27  Aligned_cols=111  Identities=22%  Similarity=0.233  Sum_probs=84.7

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCC
Q psy7829         120 IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAR  199 (511)
Q Consensus       120 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  199 (511)
                      ...+++.+.....++.+|||+|||+|.++..+++..  ..+|+++|+++.+++.|++|+..++    ...++.+...+..
T Consensus       146 t~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g--~~~V~avDid~~al~~a~~n~~~n~----~~~~~~~~~~~~~  219 (288)
T TIGR00406       146 TSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLG--AAKVVGIDIDPLAVESARKNAELNQ----VSDRLQVKLIYLE  219 (288)
T ss_pred             HHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHcC----CCcceEEEecccc
Confidence            344555555445688999999999999998888753  4589999999999999999998865    2345677776633


Q ss_pred             CCCCCCCCccEEEecCCCC---chHHHHHhhcccCcEEEEEE
Q psy7829         200 EGYLPEAPYDVIYYGGCVS---EVPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       200 ~~~~~~~~fD~I~~~~~~~---~~~~~~~~~LkpgG~l~~~~  238 (511)
                      ..  ..++||+|+++...+   .+..++.+.|||||.++++-
T Consensus       220 ~~--~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sg  259 (288)
T TIGR00406       220 QP--IEGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSG  259 (288)
T ss_pred             cc--cCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            22  246899999987654   34478899999999999863

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.34  E-value=1.5e-11  Score=120.11  Aligned_cols=109  Identities=17%  Similarity=0.240  Sum_probs=82.6

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829         121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE  200 (511)
Q Consensus       121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  200 (511)
                      ..++..+.  ..++.+|||||||+|+++..++... + .+|+|+|+|+.++..++......+    ...+++++.+|+.+
T Consensus       112 ~~l~~~l~--~l~g~~VLDIGCG~G~~~~~la~~g-~-~~V~GiD~S~~~l~q~~a~~~~~~----~~~~i~~~~~d~e~  183 (322)
T PRK15068        112 DRVLPHLS--PLKGRTVLDVGCGNGYHMWRMLGAG-A-KLVVGIDPSQLFLCQFEAVRKLLG----NDQRAHLLPLGIEQ  183 (322)
T ss_pred             HHHHHhhC--CCCCCEEEEeccCCcHHHHHHHHcC-C-CEEEEEcCCHHHHHHHHHHHHhcC----CCCCeEEEeCCHHH
Confidence            33444443  3467899999999999999999874 3 369999999999876554332211    13479999999876


Q ss_pred             CCCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEE
Q psy7829         201 GYLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       201 ~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~  238 (511)
                      ... .++||+|++..+++++      ++++++.|+|||.+++..
T Consensus       184 lp~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        184 LPA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             CCC-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            544 5789999998887654      378999999999999863

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.34  E-value=1.8e-11  Score=109.79  Aligned_cols=100  Identities=19%  Similarity=0.268  Sum_probs=81.2

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ..++.+|||+|||+|.++..+++.. +  +|+++|+++.+++.+++++..++      .+++++.+|..+..  .++||+
T Consensus        17 ~~~~~~vLdlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~--~~~fD~   85 (179)
T TIGR00537        17 ELKPDDVLEIGAGTGLVAIRLKGKG-K--CILTTDINPFAVKELRENAKLNN------VGLDVVMTDLFKGV--RGKFDV   85 (179)
T ss_pred             hcCCCeEEEeCCChhHHHHHHHhcC-C--EEEEEECCHHHHHHHHHHHHHcC------CceEEEEccccccc--CCcccE
Confidence            3456799999999999999999875 3  79999999999999999988753      26889999987643  258999


Q ss_pred             EEecCCCC---------------------------chHHHHHhhcccCcEEEEEEccC
Q psy7829         211 IYYGGCVS---------------------------EVPSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       211 I~~~~~~~---------------------------~~~~~~~~~LkpgG~l~~~~~~~  241 (511)
                      |+++.++.                           .+.+++.+.|||||.+++.....
T Consensus        86 Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~  143 (179)
T TIGR00537        86 ILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL  143 (179)
T ss_pred             EEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence            99998763                           12467789999999999865543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.34  E-value=1.4e-11  Score=118.17  Aligned_cols=99  Identities=17%  Similarity=0.223  Sum_probs=80.0

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCC--ceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCcc
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPT--GKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYD  209 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  209 (511)
                      .++.+|||+|||+|+++..+++.....  .+++|+|+|+.+++.|+++.          +++.+.++|+.+.+..+++||
T Consensus        84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----------~~~~~~~~d~~~lp~~~~sfD  153 (272)
T PRK11088         84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----------PQVTFCVASSHRLPFADQSLD  153 (272)
T ss_pred             CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----------CCCeEEEeecccCCCcCCcee
Confidence            355789999999999999999876322  37999999999999997652          368899999887555568999


Q ss_pred             EEEecCCCCchHHHHHhhcccCcEEEEEEccC
Q psy7829         210 VIYYGGCVSEVPSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       210 ~I~~~~~~~~~~~~~~~~LkpgG~l~~~~~~~  241 (511)
                      +|++... +...+++.++|||||++++.....
T Consensus       154 ~I~~~~~-~~~~~e~~rvLkpgG~li~~~p~~  184 (272)
T PRK11088        154 AIIRIYA-PCKAEELARVVKPGGIVITVTPGP  184 (272)
T ss_pred             EEEEecC-CCCHHHHHhhccCCCEEEEEeCCC
Confidence            9998765 445689999999999999866543

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.33  E-value=1.3e-11  Score=116.38  Aligned_cols=111  Identities=23%  Similarity=0.270  Sum_probs=87.8

Q ss_pred             HHHHHHHHHhhcC-CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc
Q psy7829         119 QIADAAENLKLHL-VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD  197 (511)
Q Consensus       119 ~~~~~~~~l~~~~-~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  197 (511)
                      +...+++.+.... ..+.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++..         +++.++.+|
T Consensus        19 ~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~---------~~~~~~~~d   88 (240)
T TIGR02072        19 MAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS---------ENVQFICGD   88 (240)
T ss_pred             HHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC---------CCCeEEecc
Confidence            4444555554221 345789999999999999999986 77889999999999999987643         268899999


Q ss_pred             CCCCCCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEEc
Q psy7829         198 AREGYLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       198 ~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~  239 (511)
                      +.......++||+|+++.+++++      +.++.+.|||||.+++...
T Consensus        89 ~~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~  136 (240)
T TIGR02072        89 AEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTF  136 (240)
T ss_pred             hhhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence            88655455789999999877644      4789999999999998654

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.33  E-value=1.2e-11  Score=111.57  Aligned_cols=115  Identities=22%  Similarity=0.336  Sum_probs=92.9

Q ss_pred             hHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEE-
Q psy7829         117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE-  195 (511)
Q Consensus       117 p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~-  195 (511)
                      |.....+..++.  ...+.+|||||++.|+.++.+|.....+++++++|+++++.+.|++|+++.|    ..++|.++. 
T Consensus        45 ~e~g~~L~~L~~--~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag----~~~~i~~~~~  118 (219)
T COG4122          45 PETGALLRLLAR--LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG----VDDRIELLLG  118 (219)
T ss_pred             hhHHHHHHHHHH--hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC----CcceEEEEec
Confidence            444444444444  6688899999999999999999999658999999999999999999999987    345688888 


Q ss_pred             ccCCCCCC--CCCCccEEEecCCCC---chHHHHHhhcccCcEEEEE
Q psy7829         196 ADAREGYL--PEAPYDVIYYGGCVS---EVPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       196 ~d~~~~~~--~~~~fD~I~~~~~~~---~~~~~~~~~LkpgG~l~~~  237 (511)
                      +|+.+...  ..++||+||++..-.   ...+.+.++|+|||.+++-
T Consensus       119 gdal~~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~D  165 (219)
T COG4122         119 GDALDVLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVAD  165 (219)
T ss_pred             CcHHHHHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEe
Confidence            58764332  248999999997754   4457889999999999983

>TIGR00452 methyltransferase, putative

Probab=99.33  E-value=1.5e-11  Score=118.73  Aligned_cols=101  Identities=15%  Similarity=0.193  Sum_probs=77.6

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ..++.+|||+|||+|+++..++... + ..|+|+|+|+.++..++......+    ...++.+..+++.+... ..+||+
T Consensus       119 ~~~g~~VLDvGCG~G~~~~~~~~~g-~-~~v~GiDpS~~ml~q~~~~~~~~~----~~~~v~~~~~~ie~lp~-~~~FD~  191 (314)
T TIGR00452       119 PLKGRTILDVGCGSGYHMWRMLGHG-A-KSLVGIDPTVLFLCQFEAVRKLLD----NDKRAILEPLGIEQLHE-LYAFDT  191 (314)
T ss_pred             CCCCCEEEEeccCCcHHHHHHHHcC-C-CEEEEEcCCHHHHHHHHHHHHHhc----cCCCeEEEECCHHHCCC-CCCcCE
Confidence            4568899999999999999888764 3 479999999999877544322211    23468888888765433 358999


Q ss_pred             EEecCCCCch------HHHHHhhcccCcEEEEEE
Q psy7829         211 IYYGGCVSEV------PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       211 I~~~~~~~~~------~~~~~~~LkpgG~l~~~~  238 (511)
                      |++..+++++      ++++++.|||||.|++..
T Consensus       192 V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet  225 (314)
T TIGR00452       192 VFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET  225 (314)
T ss_pred             EEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence            9999888654      478999999999999864

Known examples to date are restricted to the proteobacteria.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.33  E-value=7.7e-12  Score=116.74  Aligned_cols=98  Identities=26%  Similarity=0.368  Sum_probs=82.1

Q ss_pred             CEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEec
Q psy7829         135 AKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYG  214 (511)
Q Consensus       135 ~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~  214 (511)
                      .+|||||||+|..+..+++.+ +..+|+++|+|+.+++.+++++...+    ..++++++..|...... .++||+|++.
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~g----l~~~i~~~~~d~~~~~~-~~~fD~I~~~   74 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALG----LQGRIRIFYRDSAKDPF-PDTYDLVFGF   74 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcC----CCcceEEEecccccCCC-CCCCCEeehH
Confidence            379999999999999999987 56789999999999999999988765    35579999999865433 3689999988


Q ss_pred             CCCCch------HHHHHhhcccCcEEEEEE
Q psy7829         215 GCVSEV------PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       215 ~~~~~~------~~~~~~~LkpgG~l~~~~  238 (511)
                      .+++++      .+++.+.|||||.+++..
T Consensus        75 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~  104 (224)
T smart00828       75 EVIHHIKDKMDLFSNISRHLKDGGHLVLAD  104 (224)
T ss_pred             HHHHhCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence            766543      478999999999999854

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.33  E-value=1.6e-11  Score=120.45  Aligned_cols=107  Identities=17%  Similarity=0.239  Sum_probs=85.0

Q ss_pred             HHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC
Q psy7829         122 DAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG  201 (511)
Q Consensus       122 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  201 (511)
                      .+++.+.  .....+|||+|||+|.++..+++.. +..+|+++|+++.+++.++++++.++.      ..+++..|....
T Consensus       187 lLl~~l~--~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l------~~~~~~~D~~~~  257 (342)
T PRK09489        187 LLLSTLT--PHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGL------EGEVFASNVFSD  257 (342)
T ss_pred             HHHHhcc--ccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC------CCEEEEcccccc
Confidence            3455554  2335589999999999999999986 678899999999999999999988641      356778887653


Q ss_pred             CCCCCCccEEEecCCCCc-----------hHHHHHhhcccCcEEEEEEc
Q psy7829         202 YLPEAPYDVIYYGGCVSE-----------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       202 ~~~~~~fD~I~~~~~~~~-----------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      .  .+.||+|+++++++.           +.+.+.+.|||||.+++...
T Consensus       258 ~--~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan  304 (342)
T PRK09489        258 I--KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (342)
T ss_pred             c--CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence            2  378999999998864           23677899999999998654

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.33  E-value=1.3e-11  Score=123.37  Aligned_cols=105  Identities=26%  Similarity=0.210  Sum_probs=84.2

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCC
Q psy7829         120 IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAR  199 (511)
Q Consensus       120 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  199 (511)
                      ...+++.+.  ++++.+|||||||+|.++..+++..  ..+|+++|+|+++++.|+++....        ++++...|..
T Consensus       156 ~~~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l--------~v~~~~~D~~  223 (383)
T PRK11705        156 LDLICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGL--------PVEIRLQDYR  223 (383)
T ss_pred             HHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccC--------eEEEEECchh
Confidence            334455554  6789999999999999999999876  458999999999999999987431        4788888876


Q ss_pred             CCCCCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEEEc
Q psy7829         200 EGYLPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       200 ~~~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~~~  239 (511)
                      ..   .++||.|++..+++++        .+++.+.|||||.+++...
T Consensus       224 ~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i  268 (383)
T PRK11705        224 DL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI  268 (383)
T ss_pred             hc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence            43   3689999988776554        4778999999999998643

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.32  E-value=7.5e-12  Score=119.16  Aligned_cols=109  Identities=22%  Similarity=0.311  Sum_probs=82.9

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      +...+++.|.....++.+|||+|||||.+++..++..  ..+|+++|+++.+++.|++|+..|+    ...++.+.  ..
T Consensus       147 TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klG--A~~v~a~DiDp~Av~~a~~N~~~N~----~~~~~~v~--~~  218 (295)
T PF06325_consen  147 TTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLG--AKKVVAIDIDPLAVEAARENAELNG----VEDRIEVS--LS  218 (295)
T ss_dssp             HHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTT--BSEEEEEESSCHHHHHHHHHHHHTT-----TTCEEES--CT
T ss_pred             HHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHHcC----CCeeEEEE--Ee
Confidence            5566777777777899999999999999999988874  3589999999999999999999987    33455543  22


Q ss_pred             CCCCCCCCCccEEEecCCCCc---hHHHHHhhcccCcEEEEE
Q psy7829         199 REGYLPEAPYDVIYYGGCVSE---VPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       199 ~~~~~~~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~l~~~  237 (511)
                      .+ . ..++||+|++|-...-   +...+.+.|+|||.++++
T Consensus       219 ~~-~-~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlS  258 (295)
T PF06325_consen  219 ED-L-VEGKFDLVVANILADVLLELAPDIASLLKPGGYLILS  258 (295)
T ss_dssp             SC-T-CCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEE
T ss_pred             cc-c-ccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEc
Confidence            12 2 2388999999865433   336778899999999997

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.32  E-value=1.1e-11  Score=117.60  Aligned_cols=106  Identities=17%  Similarity=0.237  Sum_probs=78.2

Q ss_pred             CCCCEEEEEcCCccH----HHHHHHHHhC----CCceEEEEeCCHHHHHHHHHHHhc------------------cCCCc
Q psy7829         132 VDGAKVLDLGSGSGY----QTCVFAHMVG----PTGKVIGVEHIPELIEASLRNISK------------------GNKDL  185 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~----~~~~la~~~~----~~~~v~~iD~~~~~~~~a~~~~~~------------------~~~~~  185 (511)
                      .++.+|||+|||+|.    +++.+++...    .+.+|+|+|+|+.+++.|++.+-.                  .+..+
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~  177 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY  177 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence            356799999999996    5566666543    257899999999999999975311                  00000


Q ss_pred             ----CCCCCeEEEEccCCCCCCCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEE
Q psy7829         186 ----LDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       186 ----~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~  237 (511)
                          -...+|+|.++|+.+..++.++||+|+|..++.++        .+++.+.|+|||.|++.
T Consensus       178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg  241 (264)
T smart00138      178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG  241 (264)
T ss_pred             EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence                01136899999998765556889999998776543        47889999999999974

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK14967 putative methyltransferase; Provisional

Probab=99.31  E-value=3.9e-11  Score=111.59  Aligned_cols=100  Identities=23%  Similarity=0.227  Sum_probs=80.4

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      +.++.+|||+|||+|.++..+++..  ..+++++|+++.+++.+++|+..++      .+++++.+|+.... ..++||+
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~~--~~~v~~vD~s~~~l~~a~~n~~~~~------~~~~~~~~d~~~~~-~~~~fD~  104 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAAG--AGSVTAVDISRRAVRSARLNALLAG------VDVDVRRGDWARAV-EFRPFDV  104 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhC------CeeEEEECchhhhc-cCCCeeE
Confidence            5678899999999999999988752  3589999999999999999988753      25889999987643 3468999


Q ss_pred             EEecCCCCc---------------------------hHHHHHhhcccCcEEEEEEc
Q psy7829         211 IYYGGCVSE---------------------------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       211 I~~~~~~~~---------------------------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      |+++.++..                           +.+.+.+.|||||++++...
T Consensus       105 Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~  160 (223)
T PRK14967        105 VVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS  160 (223)
T ss_pred             EEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            999876431                           23567899999999997543

>KOG1270|consensus

Probab=99.31  E-value=3.6e-12  Score=115.03  Aligned_cols=97  Identities=22%  Similarity=0.395  Sum_probs=77.1

Q ss_pred             CCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCC----CeEEEEccCCCCCCCCCCcc
Q psy7829         134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG----RVRIVEADAREGYLPEAPYD  209 (511)
Q Consensus       134 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~----~v~~~~~d~~~~~~~~~~fD  209 (511)
                      |.+|||+|||.|.++..||+..   ++|+|+|+++++++.|++......   ....    ++++.+.|++..   .+.||
T Consensus        90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP---~~~~~~~y~l~~~~~~~E~~---~~~fD  160 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDP---VLEGAIAYRLEYEDTDVEGL---TGKFD  160 (282)
T ss_pred             CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCc---hhccccceeeehhhcchhhc---ccccc
Confidence            5789999999999999999985   469999999999999999944322   1222    366677776542   25599


Q ss_pred             EEEecCCCCch--H----HHHHhhcccCcEEEEEEc
Q psy7829         210 VIYYGGCVSEV--P----SRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       210 ~I~~~~~~~~~--~----~~~~~~LkpgG~l~~~~~  239 (511)
                      .|+|..+++|+  +    ..+.+.|||||.++++.-
T Consensus       161 aVvcsevleHV~dp~~~l~~l~~~lkP~G~lfitti  196 (282)
T KOG1270|consen  161 AVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTI  196 (282)
T ss_pred             eeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeeh
Confidence            99999999887  3    678899999999999754

>PTZ00146 fibrillarin; Provisional

Probab=99.31  E-value=2.6e-11  Score=114.08  Aligned_cols=114  Identities=25%  Similarity=0.271  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHhh-cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829         118 NQIADAAENLKL-HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA  196 (511)
Q Consensus       118 ~~~~~~~~~l~~-~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  196 (511)
                      .+.+.++.-+.. .++++.+|||+|||+|.++..++..+++.++|+++|+++.+.+...+.+..       .+||.++.+
T Consensus       116 Klaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-------r~NI~~I~~  188 (293)
T PTZ00146        116 KLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-------RPNIVPIIE  188 (293)
T ss_pred             HHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-------cCCCEEEEC
Confidence            355555444442 368999999999999999999999998889999999998766555444332       247999999


Q ss_pred             cCCCCC---CCCCCccEEEecCCCCc----hHHHHHhhcccCcEEEEEE
Q psy7829         197 DAREGY---LPEAPYDVIYYGGCVSE----VPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       197 d~~~~~---~~~~~fD~I~~~~~~~~----~~~~~~~~LkpgG~l~~~~  238 (511)
                      |+....   ....+||+|+++...++    +..++.+.|||||.|++.+
T Consensus       189 Da~~p~~y~~~~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~i  237 (293)
T PTZ00146        189 DARYPQKYRMLVPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFIISI  237 (293)
T ss_pred             CccChhhhhcccCCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEEE
Confidence            986431   12357999999886544    2357889999999999953

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.31  E-value=1.7e-11  Score=119.14  Aligned_cols=97  Identities=22%  Similarity=0.285  Sum_probs=81.1

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEE
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVI  211 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I  211 (511)
                      .++.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.|+++...        .+++++.+|+.+.....++||+|
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~--------~~i~~i~gD~e~lp~~~~sFDvV  182 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL--------KECKIIEGDAEDLPFPTDYADRY  182 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhc--------cCCeEEeccHHhCCCCCCceeEE
Confidence            467899999999999999999886 457899999999999999987542        36889999987654455789999


Q ss_pred             EecCCCCch------HHHHHhhcccCcEEEEE
Q psy7829         212 YYGGCVSEV------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       212 ~~~~~~~~~------~~~~~~~LkpgG~l~~~  237 (511)
                      +++.+++++      ++++.+.|||||++++.
T Consensus       183 Is~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi  214 (340)
T PLN02490        183 VSAGSIEYWPDPQRGIKEAYRVLKIGGKACLI  214 (340)
T ss_pred             EEcChhhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            998877643      47899999999999874

>PLN02476 O-methyltransferase

Probab=99.31  E-value=1.5e-11  Score=115.59  Aligned_cols=103  Identities=17%  Similarity=0.275  Sum_probs=87.1

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC------C
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL------P  204 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------~  204 (511)
                      ..++.+||||||++|+.++.++...+++++|+++|.+++..+.|+++++++|    ..++|+++.+|+.+..+      .
T Consensus       116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG----l~~~I~li~GdA~e~L~~l~~~~~  191 (278)
T PLN02476        116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG----VSHKVNVKHGLAAESLKSMIQNGE  191 (278)
T ss_pred             hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEcCHHHHHHHHHhccc
Confidence            5578899999999999999999988778899999999999999999999987    34689999999864321      1


Q ss_pred             CCCccEEEecCCCCc---hHHHHHhhcccCcEEEEE
Q psy7829         205 EAPYDVIYYGGCVSE---VPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       205 ~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~l~~~  237 (511)
                      .++||+||++..-..   ..+.+.+.|+|||.+++.
T Consensus       192 ~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        192 GSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence            368999999987543   347788999999999873

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.30  E-value=5.6e-13  Score=107.19  Aligned_cols=91  Identities=19%  Similarity=0.398  Sum_probs=59.8

Q ss_pred             EEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC--CCCCccEEEecC
Q psy7829         138 LDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL--PEAPYDVIYYGG  215 (511)
Q Consensus       138 LDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD~I~~~~  215 (511)
                      ||+|||+|.++..+++.+ +..+++++|+|+.+++.+++++...+     ..+......+..+...  ..++||+|++..
T Consensus         1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~   74 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELG-----NDNFERLRFDVLDLFDYDPPESFDLVVASN   74 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT--------EEEEE--SSS---CCC----SEEEEE-
T ss_pred             CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC-----CcceeEEEeecCChhhcccccccceehhhh
Confidence            799999999999999997 78899999999999999998888743     2334444444333221  125899999999


Q ss_pred             CCCchH------HHHHhhcccCcEE
Q psy7829         216 CVSEVP------SRVLNQLKKGGRI  234 (511)
Q Consensus       216 ~~~~~~------~~~~~~LkpgG~l  234 (511)
                      +++++.      +++.+.|||||.|
T Consensus        75 vl~~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   75 VLHHLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred             hHhhhhhHHHHHHHHHHHcCCCCCC
Confidence            998773      7889999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PLN02672 methionine S-methyltransferase

Probab=99.30  E-value=2.8e-11  Score=132.53  Aligned_cols=143  Identities=16%  Similarity=0.073  Sum_probs=109.0

Q ss_pred             CCCCcccccCCCcccchhHHHHHHHHHHhhcCC---CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy7829         100 PYQDVSASLGYAGVMNAPNQIADAAENLKLHLV---DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLR  176 (511)
Q Consensus       100 ~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~---~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~  176 (511)
                      .|++..+.+..+..+++|+....+.. +.....   ++.+|||+|||+|.+++.+++.. +..+|+++|+|+.+++.|++
T Consensus        83 ~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~  160 (1082)
T PLN02672         83 NRKKLTMMEIPSIFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWI  160 (1082)
T ss_pred             EecCCceeeCCCcccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHH
Confidence            56777888999999999987776544 542211   24689999999999999999987 66799999999999999999


Q ss_pred             HHhccCCCc-----------CCCCCeEEEEccCCCCCCC-CCCccEEEecCCCC--------------------------
Q psy7829         177 NISKGNKDL-----------LDSGRVRIVEADAREGYLP-EAPYDVIYYGGCVS--------------------------  218 (511)
Q Consensus       177 ~~~~~~~~~-----------~~~~~v~~~~~d~~~~~~~-~~~fD~I~~~~~~~--------------------------  218 (511)
                      |+..++.+.           ...++++|+++|+.+.... ..+||+|++|+++-                          
T Consensus       161 Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p  240 (1082)
T PLN02672        161 NLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSN  240 (1082)
T ss_pred             HHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCc
Confidence            998754110           0125799999999865532 13699999998750                          


Q ss_pred             ------------------chHHHHHhhcccCcEEEEEEccCCCc
Q psy7829         219 ------------------EVPSRVLNQLKKGGRILAPIGPMDDF  244 (511)
Q Consensus       219 ------------------~~~~~~~~~LkpgG~l~~~~~~~~~~  244 (511)
                                        .+...+.+.|+|||.+++.++..+..
T Consensus       241 ~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~  284 (1082)
T PLN02672        241 YCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQ  284 (1082)
T ss_pred             cccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHH
Confidence                              01145567999999999999876654

>PLN03075 nicotianamine synthase; Provisional

Probab=99.30  E-value=3.5e-11  Score=113.67  Aligned_cols=102  Identities=21%  Similarity=0.176  Sum_probs=80.6

Q ss_pred             CCCCEEEEEcCCccHH-HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhc-cCCCcCCCCCeEEEEccCCCCCCCCCCcc
Q psy7829         132 VDGAKVLDLGSGSGYQ-TCVFAHMVGPTGKVIGVEHIPELIEASLRNISK-GNKDLLDSGRVRIVEADAREGYLPEAPYD  209 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~-~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  209 (511)
                      .++.+|+|||||.|.+ ++.++....|+++++++|+++++++.|++.+.. .+    ..++++|..+|+.+.....+.||
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g----L~~rV~F~~~Da~~~~~~l~~FD  197 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD----LSKRMFFHTADVMDVTESLKEYD  197 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC----ccCCcEEEECchhhcccccCCcC
Confidence            3778999999997754 455554445889999999999999999999854 33    34679999999987543347899


Q ss_pred             EEEecCCCC--------chHHHHHhhcccCcEEEEEE
Q psy7829         210 VIYYGGCVS--------EVPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       210 ~I~~~~~~~--------~~~~~~~~~LkpgG~l~~~~  238 (511)
                      +|++. ++.        .+.+.+.+.|+|||.+++-.
T Consensus       198 lVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        198 VVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             EEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            99999 443        24488999999999999854

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.29  E-value=4e-11  Score=118.16  Aligned_cols=118  Identities=19%  Similarity=0.142  Sum_probs=93.5

Q ss_pred             cchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEE
Q psy7829         114 MNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI  193 (511)
Q Consensus       114 ~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~  193 (511)
                      ...|.+...+++...  ++++.+|||+|||+|.++..++..   ..+++|+|+++.+++.+++|++..+     ..++++
T Consensus       165 ~l~~~la~~~~~l~~--~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g-----~~~i~~  234 (329)
T TIGR01177       165 SMDPKLARAMVNLAR--VTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYG-----IEDFFV  234 (329)
T ss_pred             CCCHHHHHHHHHHhC--CCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhC-----CCCCeE
Confidence            335666666776664  778999999999999998887664   3579999999999999999998864     345899


Q ss_pred             EEccCCCCCCCCCCccEEEecCCCC---------------chHHHHHhhcccCcEEEEEEccC
Q psy7829         194 VEADAREGYLPEAPYDVIYYGGCVS---------------EVPSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       194 ~~~d~~~~~~~~~~fD~I~~~~~~~---------------~~~~~~~~~LkpgG~l~~~~~~~  241 (511)
                      .++|+.+.....++||+|++++|+.               .+++.+.+.|||||++++.+...
T Consensus       235 ~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~  297 (329)
T TIGR01177       235 KRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR  297 (329)
T ss_pred             EecchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence            9999987544457899999997751               23467889999999999876543

This family is found exclusively in the Archaea.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.29  E-value=3.6e-11  Score=113.73  Aligned_cols=104  Identities=27%  Similarity=0.329  Sum_probs=78.2

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCC
Q psy7829         120 IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAR  199 (511)
Q Consensus       120 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  199 (511)
                      ...+++.+.....++.+|||+|||+|.+++.+++.. . .+|+++|+|+.+++.|++|+..++    ...++.+..+|  
T Consensus       106 t~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g-~-~~v~giDis~~~l~~A~~n~~~~~----~~~~~~~~~~~--  177 (250)
T PRK00517        106 TRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLG-A-KKVLAVDIDPQAVEAARENAELNG----VELNVYLPQGD--  177 (250)
T ss_pred             HHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcC-C-CeEEEEECCHHHHHHHHHHHHHcC----CCceEEEccCC--
Confidence            334555555446689999999999999998877653 3 469999999999999999998864    12334443332  


Q ss_pred             CCCCCCCCccEEEecCCCCc---hHHHHHhhcccCcEEEEE
Q psy7829         200 EGYLPEAPYDVIYYGGCVSE---VPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       200 ~~~~~~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~l~~~  237 (511)
                            .+||+|+++...+.   +..++.+.|||||.++++
T Consensus       178 ------~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lils  212 (250)
T PRK00517        178 ------LKADVIVANILANPLLELAPDLARLLKPGGRLILS  212 (250)
T ss_pred             ------CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence                  27999998765432   347889999999999986

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.29  E-value=1.3e-11  Score=107.94  Aligned_cols=96  Identities=19%  Similarity=0.286  Sum_probs=73.5

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEE
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVI  211 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I  211 (511)
                      ..-.++||+|||.|.++..||.++.   +++++|+|+.+++.|++++..       .++|+++++|+.+.++ .+.||+|
T Consensus        42 ~ry~~alEvGCs~G~lT~~LA~rCd---~LlavDis~~Al~~Ar~Rl~~-------~~~V~~~~~dvp~~~P-~~~FDLI  110 (201)
T PF05401_consen   42 RRYRRALEVGCSIGVLTERLAPRCD---RLLAVDISPRALARARERLAG-------LPHVEWIQADVPEFWP-EGRFDLI  110 (201)
T ss_dssp             SSEEEEEEE--TTSHHHHHHGGGEE---EEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TTT----SS-EEEE
T ss_pred             cccceeEecCCCccHHHHHHHHhhC---ceEEEeCCHHHHHHHHHhcCC-------CCCeEEEECcCCCCCC-CCCeeEE
Confidence            3446899999999999999999973   599999999999999999875       4589999999987554 4899999


Q ss_pred             EecCCCCch---------HHHHHhhcccCcEEEEEE
Q psy7829         212 YYGGCVSEV---------PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       212 ~~~~~~~~~---------~~~~~~~LkpgG~l~~~~  238 (511)
                      +++..+..+         ..++.+.|+|||.|++..
T Consensus       111 V~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~  146 (201)
T PF05401_consen  111 VLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH  146 (201)
T ss_dssp             EEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence            998877543         356778999999999843

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK06922 hypothetical protein; Provisional

Probab=99.29  E-value=2.5e-11  Score=124.94  Aligned_cols=101  Identities=19%  Similarity=0.338  Sum_probs=82.6

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC--CCCCCc
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY--LPEAPY  208 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~f  208 (511)
                      ..++.+|||+|||+|..+..+++.. +..+|+|+|+|+.|++.|+++....      ..+++++++|..+..  .++++|
T Consensus       416 ~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~------g~~ie~I~gDa~dLp~~fedeSF  488 (677)
T PRK06922        416 YIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNE------GRSWNVIKGDAINLSSSFEKESV  488 (677)
T ss_pred             hcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhc------CCCeEEEEcchHhCccccCCCCE
Confidence            3468899999999999999999886 7889999999999999999887653      236888999987533  345789


Q ss_pred             cEEEecCCCCc-------------------hHHHHHhhcccCcEEEEEE
Q psy7829         209 DVIYYGGCVSE-------------------VPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       209 D~I~~~~~~~~-------------------~~~~~~~~LkpgG~l~~~~  238 (511)
                      |+|+++.++++                   +++++.+.|||||.+++..
T Consensus       489 DvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D  537 (677)
T PRK06922        489 DTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD  537 (677)
T ss_pred             EEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            99998876553                   2367889999999999854

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.28  E-value=4.6e-11  Score=117.12  Aligned_cols=104  Identities=26%  Similarity=0.261  Sum_probs=87.9

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC--CCCCCCc
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG--YLPEAPY  208 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~f  208 (511)
                      ...+..+||||||+|.++..+|+.. |+..++|+|+++.+++.+.+++...+     .+|+.++++|+...  ..+++++
T Consensus       120 ~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~g-----L~NV~~i~~DA~~ll~~~~~~s~  193 (390)
T PRK14121        120 KNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLN-----LKNLLIINYDARLLLELLPSNSV  193 (390)
T ss_pred             CCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEECCHHHhhhhCCCCce
Confidence            3456799999999999999999997 88899999999999999999988753     57899999998642  2345889


Q ss_pred             cEEEecCCCCc------------hHHHHHhhcccCcEEEEEEcc
Q psy7829         209 DVIYYGGCVSE------------VPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       209 D~I~~~~~~~~------------~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      |.|+++.+.+|            ++..+.+.|+|||.+.+....
T Consensus       194 D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~  237 (390)
T PRK14121        194 EKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS  237 (390)
T ss_pred             eEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence            99999887753            457899999999999996653

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.28  E-value=2.9e-11  Score=112.68  Aligned_cols=161  Identities=14%  Similarity=0.123  Sum_probs=104.0

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCC-eEEEEcc
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGR-VRIVEAD  197 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~-v~~~~~d  197 (511)
                      -..++...+.  --.|.+|||||||+|+++..++.+. + ..|+|+|.+....-+.+.--.-.     +.+. +.++..-
T Consensus       103 KW~rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~G-A-~~ViGiDP~~lf~~QF~~i~~~l-----g~~~~~~~lplg  173 (315)
T PF08003_consen  103 KWDRLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRG-A-KSVIGIDPSPLFYLQFEAIKHFL-----GQDPPVFELPLG  173 (315)
T ss_pred             hHHHHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcC-C-CEEEEECCChHHHHHHHHHHHHh-----CCCccEEEcCcc
Confidence            3445555553  2368999999999999999999885 3 57999999887766544322211     1222 3333223


Q ss_pred             CCCCCCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEec
Q psy7829         198 AREGYLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAI  271 (511)
Q Consensus       198 ~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  271 (511)
                      +++.+. .+.||+|++-+++.|.      +..+++.|+|||.+++..-.-.+......+-.   +  ......++.|+|-
T Consensus       174 vE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~---~--rYa~m~nv~FiPs  247 (315)
T PF08003_consen  174 VEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPE---D--RYAKMRNVWFIPS  247 (315)
T ss_pred             hhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccC---C--cccCCCceEEeCC
Confidence            333333 5789999999988654      37899999999999997544333333333322   2  2235567899998


Q ss_pred             ccccccc-cccccccCcccccccc
Q psy7829         272 MRKALQM-DIHKFQMDPVDENLFT  294 (511)
Q Consensus       272 ~~~~~~~-~~~~~~~~~~~~~~~~  294 (511)
                      ......| .+.||....+.....+
T Consensus       248 ~~~L~~wl~r~gF~~v~~v~~~~T  271 (315)
T PF08003_consen  248 VAALKNWLERAGFKDVRCVDVSPT  271 (315)
T ss_pred             HHHHHHHHHHcCCceEEEecCccC
Confidence            8765555 4678888765544433

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.28  E-value=3.4e-11  Score=106.82  Aligned_cols=106  Identities=24%  Similarity=0.209  Sum_probs=79.1

Q ss_pred             HHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC
Q psy7829         122 DAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG  201 (511)
Q Consensus       122 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  201 (511)
                      .+++.+.  .-++.++||+|||.|..+..||++.   ..|+++|+|+..++.+++.+++.+     . +|+..+.|+.+.
T Consensus        21 ~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~G---~~VtAvD~s~~al~~l~~~a~~~~-----l-~i~~~~~Dl~~~   89 (192)
T PF03848_consen   21 EVLEAVP--LLKPGKALDLGCGEGRNALYLASQG---FDVTAVDISPVALEKLQRLAEEEG-----L-DIRTRVADLNDF   89 (192)
T ss_dssp             HHHHHCT--TS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-------TEEEEE-BGCCB
T ss_pred             HHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHhhcC-----c-eeEEEEecchhc
Confidence            3445444  3456799999999999999999985   359999999999999988877743     2 499999998764


Q ss_pred             CCCCCCccEEEecCCCCc--------hHHHHHhhcccCcEEEEEEc
Q psy7829         202 YLPEAPYDVIYYGGCVSE--------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       202 ~~~~~~fD~I~~~~~~~~--------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      .. .+.||+|++..++..        +.+++.+.++|||++++...
T Consensus        90 ~~-~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~  134 (192)
T PF03848_consen   90 DF-PEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF  134 (192)
T ss_dssp             S--TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cc-cCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence            33 368999998766543        33678889999999888543

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.27  E-value=8.3e-12  Score=113.02  Aligned_cols=111  Identities=26%  Similarity=0.393  Sum_probs=88.0

Q ss_pred             HHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC
Q psy7829         122 DAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG  201 (511)
Q Consensus       122 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  201 (511)
                      .++..+. ......+||||||++|+.++.+|+.++++++|+++|++++..+.|++++++.|    ..++|+++.+|+.+.
T Consensus        35 ~lL~~l~-~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag----~~~~I~~~~gda~~~  109 (205)
T PF01596_consen   35 QLLQMLV-RLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG----LDDRIEVIEGDALEV  109 (205)
T ss_dssp             HHHHHHH-HHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT----GGGGEEEEES-HHHH
T ss_pred             HHHHHHH-HhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC----CCCcEEEEEeccHhh
Confidence            3444443 14467899999999999999999998778999999999999999999999976    356899999998642


Q ss_pred             CC------CCCCccEEEecCCCCchH---HHHHhhcccCcEEEEE
Q psy7829         202 YL------PEAPYDVIYYGGCVSEVP---SRVLNQLKKGGRILAP  237 (511)
Q Consensus       202 ~~------~~~~fD~I~~~~~~~~~~---~~~~~~LkpgG~l~~~  237 (511)
                      .+      ..++||+||++..-....   +.+.+.|+|||.+++.
T Consensus       110 l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~D  154 (205)
T PF01596_consen  110 LPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIAD  154 (205)
T ss_dssp             HHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEc
Confidence            11      136899999998765443   6778999999999883

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.27  E-value=6.6e-11  Score=111.60  Aligned_cols=111  Identities=26%  Similarity=0.411  Sum_probs=88.2

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829         121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE  200 (511)
Q Consensus       121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  200 (511)
                      ..++..+.  ..++.+|||+|||+|..+..+++.+++..+++++|+++.+++.+++++...+    ...++.++.+|+.+
T Consensus        41 ~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~  114 (239)
T PRK00216         41 RKTIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG----LSGNVEFVQGDAEA  114 (239)
T ss_pred             HHHHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc----cccCeEEEeccccc
Confidence            33455554  4577899999999999999999987436899999999999999999986643    23578999999876


Q ss_pred             CCCCCCCccEEEecCCCCc------hHHHHHhhcccCcEEEEE
Q psy7829         201 GYLPEAPYDVIYYGGCVSE------VPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       201 ~~~~~~~fD~I~~~~~~~~------~~~~~~~~LkpgG~l~~~  237 (511)
                      .....++||+|+++..+++      +++++.+.|+|||.+++.
T Consensus       115 ~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~  157 (239)
T PRK00216        115 LPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVIL  157 (239)
T ss_pred             CCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEE
Confidence            5444578999998776643      347889999999999874

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.27  E-value=3.7e-11  Score=116.07  Aligned_cols=95  Identities=22%  Similarity=0.222  Sum_probs=77.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY  212 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~  212 (511)
                      ++.+|||+|||+|..+..+++..   .+|+++|+|+.+++.+++++...+     . ++++...|+..... .++||+|+
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~-----l-~v~~~~~D~~~~~~-~~~fD~I~  189 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKEN-----L-NIRTGLYDINSASI-QEEYDFIL  189 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcC-----C-ceEEEEechhcccc-cCCccEEE
Confidence            44599999999999999998863   479999999999999999988753     2 78888888865333 47899999


Q ss_pred             ecCCCCc--------hHHHHHhhcccCcEEEEE
Q psy7829         213 YGGCVSE--------VPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       213 ~~~~~~~--------~~~~~~~~LkpgG~l~~~  237 (511)
                      +..++++        +.+++.+.|+|||++++.
T Consensus       190 ~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v  222 (287)
T PRK12335        190 STVVLMFLNRERIPAIIKNMQEHTNPGGYNLIV  222 (287)
T ss_pred             EcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            9877653        347889999999997764

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.27  E-value=4.3e-11  Score=110.08  Aligned_cols=112  Identities=25%  Similarity=0.394  Sum_probs=87.1

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANET  430 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~  430 (511)
                      .+.|..++++++.  +.++++++|||||||+|+.+..+++.++++++|+++|+++++++.+++++.   ..+++++.+|.
T Consensus        59 ~~~p~~~~~~~~~--l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~  136 (212)
T PRK13942         59 ISAIHMVAIMCEL--LDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDG  136 (212)
T ss_pred             eCcHHHHHHHHHH--cCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc
Confidence            4578889999987  788999999999999999999999998777899999999999888777654   56788888886


Q ss_pred             ccccc--ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         431 IEIIP--HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       431 ~~~l~--~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ....+  ..+|.++           +.|.-..+...+.+.|+|+|+++..
T Consensus       137 ~~~~~~~~~fD~I~-----------~~~~~~~~~~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        137 TLGYEENAPYDRIY-----------VTAAGPDIPKPLIEQLKDGGIMVIP  175 (212)
T ss_pred             ccCCCcCCCcCEEE-----------ECCCcccchHHHHHhhCCCcEEEEE
Confidence            54332  2344333           3333344556788899999998776

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.26  E-value=1.4e-10  Score=105.83  Aligned_cols=140  Identities=24%  Similarity=0.358  Sum_probs=97.1

Q ss_pred             CCCCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----ccccccc
Q psy7829         351 DNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLI  426 (511)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i  426 (511)
                      ..++.+++++ +.+.+..+.+.++.+|||+|||+|.+++.+++..++.++|+++|+++++++.+++|+.    ..++.++
T Consensus        19 ~~~~~t~~~~-r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~   97 (198)
T PRK00377         19 EEIPMTKEEI-RALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLI   97 (198)
T ss_pred             CCCCCCHHHH-HHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEE
Confidence            3567888888 5555556888999999999999999999999887667899999999988887766643    3467777


Q ss_pred             cccccccccccchhhhhcccCCcEEEEEcCC---ccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCCCceEEE
Q psy7829         427 ANETIEIIPHILDLCYLNLHRGAKVLEIGSG---SGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDLI  500 (511)
Q Consensus       427 ~~d~~~~l~~~~d~i~~~l~~~~~vLD~~~g---~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~~~i~~i  500 (511)
                      .+|..+.++..-       ..-+.++ ++++   ...+...+.+.++|+|.++..   .+-++.+.+.+++.|+ +++.+
T Consensus        98 ~~d~~~~l~~~~-------~~~D~V~-~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~-~~~~~  168 (198)
T PRK00377         98 KGEAPEILFTIN-------EKFDRIF-IGGGSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF-NLEIT  168 (198)
T ss_pred             EechhhhHhhcC-------CCCCEEE-ECCCcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC-CeEEE
Confidence            776644332110       1112232 2222   234455667788999998754   5566777778877776 44433

>PRK05785 hypothetical protein; Provisional

Probab=99.26  E-value=6.9e-11  Score=109.72  Aligned_cols=94  Identities=14%  Similarity=0.139  Sum_probs=74.1

Q ss_pred             HHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC
Q psy7829         123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY  202 (511)
Q Consensus       123 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  202 (511)
                      ++..+.....++.+|||+|||+|..+..+++..  ..+|+|+|+|++|++.|+++             ..++++|+...+
T Consensus        41 ~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~-------------~~~~~~d~~~lp  105 (226)
T PRK05785         41 LVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA-------------DDKVVGSFEALP  105 (226)
T ss_pred             HHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc-------------cceEEechhhCC
Confidence            444443223457899999999999999999885  35899999999999998764             134678887765


Q ss_pred             CCCCCccEEEecCCCCch------HHHHHhhcccC
Q psy7829         203 LPEAPYDVIYYGGCVSEV------PSRVLNQLKKG  231 (511)
Q Consensus       203 ~~~~~fD~I~~~~~~~~~------~~~~~~~Lkpg  231 (511)
                      .++++||+|++...++++      .+++.++|||.
T Consensus       106 ~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~  140 (226)
T PRK05785        106 FRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ  140 (226)
T ss_pred             CCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence            567899999999888764      37899999993

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.25  E-value=1.5e-10  Score=104.70  Aligned_cols=138  Identities=18%  Similarity=0.251  Sum_probs=92.5

Q ss_pred             CCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccc
Q psy7829         353 GPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANE  429 (511)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d  429 (511)
                      .|.+++.+...+. ..+.+.++.+|||+|||+|.+++.+++.. ++++|+++|+++++++.+++|+.   ..+++++.++
T Consensus        12 ~~~~~~~~r~~~~-~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d   89 (187)
T PRK08287         12 VPMTKEEVRALAL-SKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGE   89 (187)
T ss_pred             CCCchHHHHHHHH-HhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecC
Confidence            4567777754332 23677889999999999999999999886 67899999999988887766554   4567777776


Q ss_pred             ccccccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCCCceEEE
Q psy7829         430 TIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDLI  500 (511)
Q Consensus       430 ~~~~l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~~~i~~i  500 (511)
                      ....++..+|.++.....        .....+...+.+.|+|+|.++..   ..-.+...+.+++.|+..++++
T Consensus        90 ~~~~~~~~~D~v~~~~~~--------~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~  155 (187)
T PRK08287         90 APIELPGKADAIFIGGSG--------GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDCV  155 (187)
T ss_pred             chhhcCcCCCEEEECCCc--------cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceEE
Confidence            533333334443322100        11223455677889999998764   4445666677777777545543

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.25  E-value=7.6e-11  Score=115.26  Aligned_cols=108  Identities=19%  Similarity=0.277  Sum_probs=86.6

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCC
Q psy7829         120 IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAR  199 (511)
Q Consensus       120 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  199 (511)
                      ...+++.+.  ..++.+|||||||+|.++..+++++ |..+++++|. +.+++.+++++...+    ..++++++.+|+.
T Consensus       138 ~~~l~~~~~--~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~g----l~~rv~~~~~d~~  209 (306)
T TIGR02716       138 IQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKG----VADRMRGIAVDIY  209 (306)
T ss_pred             HHHHHHHcC--CCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCC----ccceEEEEecCcc
Confidence            334455444  6678899999999999999999997 7889999997 799999999998865    3568999999987


Q ss_pred             CCCCCCCCccEEEecCCCCc--------hHHHHHhhcccCcEEEEE
Q psy7829         200 EGYLPEAPYDVIYYGGCVSE--------VPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       200 ~~~~~~~~fD~I~~~~~~~~--------~~~~~~~~LkpgG~l~~~  237 (511)
                      +...  ..+|+|++...++.        +++++.+.|||||++++.
T Consensus       210 ~~~~--~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~  253 (306)
T TIGR02716       210 KESY--PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLIL  253 (306)
T ss_pred             CCCC--CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence            5332  23799987776542        357889999999999885

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.24  E-value=1.4e-10  Score=114.49  Aligned_cols=115  Identities=10%  Similarity=0.137  Sum_probs=78.4

Q ss_pred             HHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc------ccccccccccccc
Q psy7829         360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST------NHIDLIANETIEI  433 (511)
Q Consensus       360 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~------~~v~~i~~d~~~~  433 (511)
                      +..++..  ++...+.+|||+|||+|.+++.+++.. |..+|+++|+++.+++.+++|+..      .+++++.+|..+.
T Consensus       217 trllL~~--lp~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~  293 (378)
T PRK15001        217 ARFFMQH--LPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG  293 (378)
T ss_pred             HHHHHHh--CCcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc
Confidence            3344554  555556799999999999999999887 778999999999888888877642      2567777776655


Q ss_pred             cc-ccchhhhhcccCCcEEEEEcCC-ccHHHHHHHHHhCCCcEEEEh
Q psy7829         434 IP-HILDLCYLNLHRGAKVLEIGSG-SGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       434 l~-~~~d~i~~~l~~~~~vLD~~~g-~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ++ ..+|.++.|.+-.... .+... .-.+.....+.|+|+|.++.+
T Consensus       294 ~~~~~fDlIlsNPPfh~~~-~~~~~ia~~l~~~a~~~LkpGG~L~iV  339 (378)
T PRK15001        294 VEPFRFNAVLCNPPFHQQH-ALTDNVAWEMFHHARRCLKINGELYIV  339 (378)
T ss_pred             CCCCCEEEEEECcCcccCc-cCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence            43 3678887765432110 01100 012234456788999998877

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.24  E-value=8.4e-11  Score=107.70  Aligned_cols=113  Identities=19%  Similarity=0.322  Sum_probs=84.2

Q ss_pred             CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----cccccccccc
Q psy7829         355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANET  430 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~  430 (511)
                      .++..++++++.  +.+.++++|||+|||+|+.+..+++.+++.++|+++|+++++++.+++|+..    ++++++.+|.
T Consensus        56 ~~p~~~~~~~~~--l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~  133 (205)
T PRK13944         56 SAPHMVAMMCEL--IEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDG  133 (205)
T ss_pred             chHHHHHHHHHh--cCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCc
Confidence            456778888887  7788999999999999999999999886668999999999998887776652    2477788776


Q ss_pred             cccccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         431 IEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       431 ~~~l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .+.++..        .+-+.|+ +.+....+...+.+.|+|+|.++..
T Consensus       134 ~~~~~~~--------~~fD~Ii-~~~~~~~~~~~l~~~L~~gG~lvi~  172 (205)
T PRK13944        134 KRGLEKH--------APFDAII-VTAAASTIPSALVRQLKDGGVLVIP  172 (205)
T ss_pred             ccCCccC--------CCccEEE-EccCcchhhHHHHHhcCcCcEEEEE
Confidence            5543320        1122232 3334456677888999999998764

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.22  E-value=3.2e-10  Score=103.32  Aligned_cols=141  Identities=17%  Similarity=0.278  Sum_probs=92.3

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---cccccccccccc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANET  430 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~  430 (511)
                      |.+++.+..++.. .+.+.++++|||+|||+|.+++.+++.. +.++|+++|+++++++.+.+|+   +..+++++.+|.
T Consensus        22 p~t~~~v~~~l~~-~l~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~   99 (196)
T PRK07402         22 PLTKREVRLLLIS-QLRLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSA   99 (196)
T ss_pred             CCCHHHHHHHHHH-hcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECch
Confidence            5677888654332 3677899999999999999999998765 6689999999999888877765   345688887776


Q ss_pred             cccccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCCCceEEEec
Q psy7829         431 IEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDLIAN  502 (511)
Q Consensus       431 ~~~l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~~~i~~i~~  502 (511)
                      .+.++...      ..++...++.+.....+...+.+.|+|+|.++..   ...+....+..+..+..+.+.+|.
T Consensus       100 ~~~~~~~~------~~~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (196)
T PRK07402        100 PECLAQLA------PAPDRVCIEGGRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQA  168 (196)
T ss_pred             HHHHhhCC------CCCCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEE
Confidence            44322110      0122233333222345567778889999998877   323333444455444434455544

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.22  E-value=1.4e-10  Score=105.67  Aligned_cols=79  Identities=18%  Similarity=0.352  Sum_probs=66.2

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCcc
Q psy7829         130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYD  209 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  209 (511)
                      .+.++.+|||+|||+|..+..+++.. +..+++|+|+|+.+++.|+++..          ++.+.++|+.+ +..+++||
T Consensus        40 ~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~----------~~~~~~~d~~~-~~~~~sfD  107 (204)
T TIGR03587        40 RLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLP----------NINIIQGSLFD-PFKDNFFD  107 (204)
T ss_pred             hcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCC----------CCcEEEeeccC-CCCCCCEE
Confidence            35677899999999999999999875 56789999999999999987642          46788899877 44568999


Q ss_pred             EEEecCCCCch
Q psy7829         210 VIYYGGCVSEV  220 (511)
Q Consensus       210 ~I~~~~~~~~~  220 (511)
                      +|+++.+++++
T Consensus       108 ~V~~~~vL~hl  118 (204)
T TIGR03587       108 LVLTKGVLIHI  118 (204)
T ss_pred             EEEECChhhhC
Confidence            99999988765

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK14968 putative methyltransferase; Provisional

Probab=99.22  E-value=2.1e-10  Score=103.87  Aligned_cols=108  Identities=31%  Similarity=0.379  Sum_probs=83.8

Q ss_pred             HHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC
Q psy7829         123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY  202 (511)
Q Consensus       123 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  202 (511)
                      +++.+.  ..++.+|||+|||+|.++..+++.   ..+++++|+++.+++.+++++..++.   ...++.++.+|..+..
T Consensus        15 l~~~~~--~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~---~~~~~~~~~~d~~~~~   86 (188)
T PRK14968         15 LAENAV--DKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNI---RNNGVEVIRSDLFEPF   86 (188)
T ss_pred             HHHhhh--ccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCC---CCcceEEEeccccccc
Confidence            344443  467889999999999999999987   35799999999999999999887541   1112889999987654


Q ss_pred             CCCCCccEEEecCCCCc---------------------------hHHHHHhhcccCcEEEEEEc
Q psy7829         203 LPEAPYDVIYYGGCVSE---------------------------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       203 ~~~~~fD~I~~~~~~~~---------------------------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      .. ..||+|+++.++..                           +.+++.+.|||||.+++.+.
T Consensus        87 ~~-~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~  149 (188)
T PRK14968         87 RG-DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS  149 (188)
T ss_pred             cc-cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence            33 48999999876532                           34788899999999988654

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.21  E-value=9.8e-11  Score=107.24  Aligned_cols=96  Identities=19%  Similarity=0.279  Sum_probs=75.7

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC--------
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY--------  202 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--------  202 (511)
                      ++++.+|||+|||+|.++..+++..++.++|+++|+++.         .       ..++++++++|+....        
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---------~-------~~~~v~~i~~D~~~~~~~~~i~~~  112 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---------D-------PIVGVDFLQGDFRDELVLKALLER  112 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---------c-------CCCCcEEEecCCCChHHHHHHHHH
Confidence            478899999999999999999999877789999999881         1       1346899999988631        


Q ss_pred             CCCCCccEEEecCCCC-----------------chHHHHHhhcccCcEEEEEEccCC
Q psy7829         203 LPEAPYDVIYYGGCVS-----------------EVPSRVLNQLKKGGRILAPIGPMD  242 (511)
Q Consensus       203 ~~~~~fD~I~~~~~~~-----------------~~~~~~~~~LkpgG~l~~~~~~~~  242 (511)
                      ...++||+|+++.+.+                 .+++.+.+.|||||.+++.+....
T Consensus       113 ~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~  169 (209)
T PRK11188        113 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE  169 (209)
T ss_pred             hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc
Confidence            2347899999976432                 134788999999999999765443

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.21  E-value=5.6e-11  Score=120.66  Aligned_cols=180  Identities=18%  Similarity=0.160  Sum_probs=119.1

Q ss_pred             cCCCCCCCCcccCCCccHHHHHHHHHHcCCCCCH-HH-HHHHHhC-C---CCCccCCCCCCCcccccCCCcccchhHHHH
Q psy7829          48 VIPPPDNLNHFKNEGTCQTDLVNHLRDIGKIRTE-RV-AQAFYKV-D---RGNFANEEPYQDVSASLGYAGVMNAPNQIA  121 (511)
Q Consensus        48 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~-~~a~~~~-~---r~~~~~~~~y~~~~~~~~~~~~~~~p~~~~  121 (511)
                      ...++...+++|+...+...+.+.|...++...+ .+ ..++... .   +..+.....|..+.+.++.-+++       
T Consensus        29 ~~~~~~~~lRvN~lK~~~~~~~~~L~~~g~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~G~~yvQd~sS~-------  101 (470)
T PRK11933         29 CQRPLRRSIRVNTLKISVADFLQLMAPYGWTLTPIPWCEEGFWIERDDEDALPLGNTAEHLSGLFYIQEASSM-------  101 (470)
T ss_pred             cCCCCCeEEEEcCCcCCHHHHHHHHHhCCCceeECCCCCceEEEecCccccCCcccChHHHCCcEEEECHHHH-------
Confidence            4455667788999888888998888777652111 00 0011000 0   00011112233333333221111       


Q ss_pred             HHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC
Q psy7829         122 DAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG  201 (511)
Q Consensus       122 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  201 (511)
                      .....+....++|.+|||+|||+|.-+.+++..++..+.|+++|+++..++..++|+++.|     ..|+.+...|....
T Consensus       102 l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G-----~~nv~v~~~D~~~~  176 (470)
T PRK11933        102 LPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG-----VSNVALTHFDGRVF  176 (470)
T ss_pred             HHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEeCchhhh
Confidence            1123331125789999999999999999999998778899999999999999999999964     67889999997642


Q ss_pred             C-CCCCCccEEEecCCCC----------------------------chHHHHHhhcccCcEEEEEEc
Q psy7829         202 Y-LPEAPYDVIYYGGCVS----------------------------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       202 ~-~~~~~fD~I~~~~~~~----------------------------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      . ...+.||.|+++.+|.                            .++..+.+.|||||+|+.++-
T Consensus       177 ~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC  243 (470)
T PRK11933        177 GAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC  243 (470)
T ss_pred             hhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence            1 1236799999999883                            123567889999999988643

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.21  E-value=1.3e-10  Score=107.44  Aligned_cols=111  Identities=25%  Similarity=0.402  Sum_probs=84.5

Q ss_pred             CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccccc
Q psy7829         355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETI  431 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~  431 (511)
                      ..|..++.+++.  +.++++++|||||||+|+++..+++..+++++|+++|+++++++.+++++.   ..|++++.+|..
T Consensus        61 ~~p~~~~~~~~~--l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~  138 (215)
T TIGR00080        61 SAPHMVAMMTEL--LELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGT  138 (215)
T ss_pred             chHHHHHHHHHH--hCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcc
Confidence            467788888887  788999999999999999999999998667889999999988887776654   567888888875


Q ss_pred             cccc--ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         432 EIIP--HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       432 ~~l~--~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +..+  ..+|.++..           +....+...+.+.|+|+|+++..
T Consensus       139 ~~~~~~~~fD~Ii~~-----------~~~~~~~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       139 QGWEPLAPYDRIYVT-----------AAGPKIPEALIDQLKEGGILVMP  176 (215)
T ss_pred             cCCcccCCCCEEEEc-----------CCcccccHHHHHhcCcCcEEEEE
Confidence            5432  234443322           22233456778889999998765

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.21  E-value=8.6e-11  Score=109.26  Aligned_cols=102  Identities=21%  Similarity=0.295  Sum_probs=86.1

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCC------
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLP------  204 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~------  204 (511)
                      .....+|||||+++|+.++.+|+..+++++++++|.+++..+.|++++++.|    ..++|+++.+|+.+..+.      
T Consensus        77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag----~~~~I~~~~G~a~e~L~~l~~~~~  152 (247)
T PLN02589         77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG----VAHKIDFREGPALPVLDQMIEDGK  152 (247)
T ss_pred             HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC----CCCceEEEeccHHHHHHHHHhccc
Confidence            4467799999999999999999988778999999999999999999999987    457899999998643211      


Q ss_pred             -CCCccEEEecCCCCch---HHHHHhhcccCcEEEE
Q psy7829         205 -EAPYDVIYYGGCVSEV---PSRVLNQLKKGGRILA  236 (511)
Q Consensus       205 -~~~fD~I~~~~~~~~~---~~~~~~~LkpgG~l~~  236 (511)
                       .++||+||++..-...   .+.+.+.|+|||.+++
T Consensus       153 ~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~  188 (247)
T PLN02589        153 YHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGY  188 (247)
T ss_pred             cCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEE
Confidence             2689999999775433   3677899999999987

>PRK04457 spermidine synthase; Provisional

Probab=99.19  E-value=1.9e-10  Score=109.11  Aligned_cols=103  Identities=20%  Similarity=0.271  Sum_probs=82.4

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCccE
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYDV  210 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~  210 (511)
                      .++.+|||||||+|.++..+++.. |..+++++|+++++++.|++++...+    ..++++++.+|+.+... ..++||+
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~----~~~rv~v~~~Da~~~l~~~~~~yD~  139 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPE----NGERFEVIEADGAEYIAVHRHSTDV  139 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCC----CCCceEEEECCHHHHHHhCCCCCCE
Confidence            456789999999999999999987 78899999999999999999976532    24689999999864322 2367999


Q ss_pred             EEecCCC----------CchHHHHHhhcccCcEEEEEEc
Q psy7829         211 IYYGGCV----------SEVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       211 I~~~~~~----------~~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      |+++.--          ..+.+.+.+.|+|||++++.+.
T Consensus       140 I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~  178 (262)
T PRK04457        140 ILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW  178 (262)
T ss_pred             EEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence            9986411          2345789999999999998654

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.19  E-value=3.9e-10  Score=101.77  Aligned_cols=115  Identities=16%  Similarity=0.117  Sum_probs=83.8

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      +...+++.+. ...++.+|||+|||+|.+++.++...  ..+|+++|+++.+++.+++|++.++     ..+++++++|+
T Consensus        40 v~e~l~~~l~-~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~-----~~~v~~~~~D~  111 (199)
T PRK10909         40 VRETLFNWLA-PVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLK-----AGNARVVNTNA  111 (199)
T ss_pred             HHHHHHHHHh-hhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhC-----CCcEEEEEchH
Confidence            3344555553 12467899999999999998655443  3589999999999999999998864     45799999998


Q ss_pred             CCCCC-CCCCccEEEecCCCC-chHH----HHHh--hcccCcEEEEEEccC
Q psy7829         199 REGYL-PEAPYDVIYYGGCVS-EVPS----RVLN--QLKKGGRILAPIGPM  241 (511)
Q Consensus       199 ~~~~~-~~~~fD~I~~~~~~~-~~~~----~~~~--~LkpgG~l~~~~~~~  241 (511)
                      .+... ...+||+|++++|+. .+..    .+..  +|+|++.++++....
T Consensus       112 ~~~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~  162 (199)
T PRK10909        112 LSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEVE  162 (199)
T ss_pred             HHHHhhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence            75332 234699999999963 3332    2332  368899999886643

>KOG1271|consensus

Probab=99.19  E-value=1.7e-10  Score=98.03  Aligned_cols=99  Identities=21%  Similarity=0.300  Sum_probs=78.3

Q ss_pred             CCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEe
Q psy7829         134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYY  213 (511)
Q Consensus       134 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~  213 (511)
                      ..+|||+|||.|.+...|++.. -.+.++|+|.|+.+++.|+..+++.+    ..+.|+|.+.|+..+....++||+|+-
T Consensus        68 A~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~----~~n~I~f~q~DI~~~~~~~~qfdlvlD  142 (227)
T KOG1271|consen   68 ADRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDG----FSNEIRFQQLDITDPDFLSGQFDLVLD  142 (227)
T ss_pred             ccceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcC----CCcceeEEEeeccCCcccccceeEEee
Confidence            3499999999999999999875 45679999999999999988888764    233499999999875444578888865


Q ss_pred             cCCCCc--------------hHHHHHhhcccCcEEEEE
Q psy7829         214 GGCVSE--------------VPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       214 ~~~~~~--------------~~~~~~~~LkpgG~l~~~  237 (511)
                      -..+..              ....+.+.|+|||++++.
T Consensus       143 KGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvIt  180 (227)
T KOG1271|consen  143 KGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVIT  180 (227)
T ss_pred             cCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEE
Confidence            443322              136788999999999984

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.19  E-value=2.4e-10  Score=104.66  Aligned_cols=104  Identities=21%  Similarity=0.227  Sum_probs=75.6

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCC-------CcCCCCCeEEEEccCCCCCCC
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK-------DLLDSGRVRIVEADAREGYLP  204 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-------~~~~~~~v~~~~~d~~~~~~~  204 (511)
                      .++.+|||+|||.|..+..||++.   .+|+|+|+|+.+++.+.+.......       ......+++++++|+.+....
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G---~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~  109 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQG---HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA  109 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCC---CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence            577899999999999999999874   3699999999999986442211000       000124699999999864322


Q ss_pred             -CCCccEEEecCCCCchH--------HHHHhhcccCcEEEEEE
Q psy7829         205 -EAPYDVIYYGGCVSEVP--------SRVLNQLKKGGRILAPI  238 (511)
Q Consensus       205 -~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~l~~~~  238 (511)
                       .+.||.|+....+.+++        +.+.++|||||++++..
T Consensus       110 ~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~  152 (213)
T TIGR03840       110 DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT  152 (213)
T ss_pred             cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence             35799998877665553        67899999999876643

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.19  E-value=2.5e-10  Score=106.40  Aligned_cols=107  Identities=24%  Similarity=0.373  Sum_probs=85.1

Q ss_pred             HHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC
Q psy7829         122 DAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG  201 (511)
Q Consensus       122 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  201 (511)
                      .+++.+.  ..++.+|||+|||+|..+..+++..+..++++++|+++.+++.++++...       ..+++++.+|+.+.
T Consensus        30 ~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~-------~~~i~~~~~d~~~~  100 (223)
T TIGR01934        30 RAVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL-------PLNIEFIQADAEAL  100 (223)
T ss_pred             HHHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc-------CCCceEEecchhcC
Confidence            3444443  44788999999999999999999874337899999999999999988651       34689999998865


Q ss_pred             CCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEE
Q psy7829         202 YLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       202 ~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~  237 (511)
                      ....++||+|+++..++++      .+++.+.|+|||.+++.
T Consensus       101 ~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  142 (223)
T TIGR01934       101 PFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVIL  142 (223)
T ss_pred             CCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence            4445789999987766543      47889999999999874

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>KOG1541|consensus

Probab=99.17  E-value=1.7e-10  Score=101.16  Aligned_cols=114  Identities=23%  Similarity=0.320  Sum_probs=87.2

Q ss_pred             hhHHHHHHHHHHhhcCCC--CCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEE
Q psy7829         116 APNQIADAAENLKLHLVD--GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI  193 (511)
Q Consensus       116 ~p~~~~~~~~~l~~~~~~--~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~  193 (511)
                      +..+..+.++++.  ++.  ..-|||||||||..+..+....   -.++|+|+|+.|++.|.+.--+          -.+
T Consensus        33 Q~em~eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvDiSpsML~~a~~~e~e----------gdl   97 (270)
T KOG1541|consen   33 QAEMAERALELLA--LPGPKSGLILDIGCGSGLSGSVLSDSG---HQWIGVDISPSMLEQAVERELE----------GDL   97 (270)
T ss_pred             hHHHHHHHHHHhh--CCCCCCcEEEEeccCCCcchheeccCC---ceEEeecCCHHHHHHHHHhhhh----------cCe
Confidence            5567888888887  554  5679999999999998887754   3599999999999999973211          257


Q ss_pred             EEccCCCCCC-CCCCccEEEecCCCCchH-----------------HHHHhhcccCcEEEEEEccCCCc
Q psy7829         194 VEADAREGYL-PEAPYDVIYYGGCVSEVP-----------------SRVLNQLKKGGRILAPIGPMDDF  244 (511)
Q Consensus       194 ~~~d~~~~~~-~~~~fD~I~~~~~~~~~~-----------------~~~~~~LkpgG~l~~~~~~~~~~  244 (511)
                      +.+|+-++.+ ..++||.+++..+++|+-                 ..++.+|++|++.++-+.+....
T Consensus        98 il~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~  166 (270)
T KOG1541|consen   98 ILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEA  166 (270)
T ss_pred             eeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchH
Confidence            8888776543 469999998877665431                 35788999999999987766543

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.16  E-value=1.2e-10  Score=101.71  Aligned_cols=96  Identities=24%  Similarity=0.418  Sum_probs=79.1

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC--CCCCC
Q psy7829         130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY--LPEAP  207 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~  207 (511)
                      .+++|.+|||+|||.|.+...|.+.  .+.+.+|+|++++.+..|.++            .+.++++|+.+..  .++++
T Consensus        10 ~I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r------------Gv~Viq~Dld~gL~~f~d~s   75 (193)
T PF07021_consen   10 WIEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR------------GVSVIQGDLDEGLADFPDQS   75 (193)
T ss_pred             HcCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc------------CCCEEECCHHHhHhhCCCCC
Confidence            4679999999999999999998886  467899999999998877654            4789999998643  35689


Q ss_pred             ccEEEecCCCCchH---HHHHhhcccCcEEEEEEc
Q psy7829         208 YDVIYYGGCVSEVP---SRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       208 fD~I~~~~~~~~~~---~~~~~~LkpgG~l~~~~~  239 (511)
                      ||.|+.+.+++.+.   .-+.+.|+-|...++++.
T Consensus        76 FD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFP  110 (193)
T PF07021_consen   76 FDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVSFP  110 (193)
T ss_pred             ccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEEec
Confidence            99999999887764   446677888888888765

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.15  E-value=1.3e-10  Score=102.28  Aligned_cols=92  Identities=28%  Similarity=0.470  Sum_probs=72.0

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ..++.+|||+|||+|.++..+++.. .  +++++|+++.+++.      .         ++.....+......+.++||+
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~-~--~~~g~D~~~~~~~~------~---------~~~~~~~~~~~~~~~~~~fD~   81 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRG-F--EVTGVDISPQMIEK------R---------NVVFDNFDAQDPPFPDGSFDL   81 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTT-S--EEEEEESSHHHHHH------T---------TSEEEEEECHTHHCHSSSEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhC-C--EEEEEECCHHHHhh------h---------hhhhhhhhhhhhhccccchhh
Confidence            5688999999999999999997763 3  89999999999887      1         233333333232334588999


Q ss_pred             EEecCCCCchH------HHHHhhcccCcEEEEEEcc
Q psy7829         211 IYYGGCVSEVP------SRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       211 I~~~~~~~~~~------~~~~~~LkpgG~l~~~~~~  240 (511)
                      |++..++++++      +.+.+.|||||.+++.+..
T Consensus        82 i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~  117 (161)
T PF13489_consen   82 IICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPN  117 (161)
T ss_dssp             EEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred             HhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence            99999998774      7899999999999997654

...

>TIGR03438 probable methyltransferase

Probab=99.15  E-value=5.4e-10  Score=108.59  Aligned_cols=115  Identities=16%  Similarity=0.237  Sum_probs=81.7

Q ss_pred             HHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCC
Q psy7829         125 ENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLP  204 (511)
Q Consensus       125 ~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  204 (511)
                      +.+...+.++.+|||+|||+|..+..+++.+....+++++|+|++|++.+++++....    ..-++.++++|+.+....
T Consensus        55 ~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~----p~~~v~~i~gD~~~~~~~  130 (301)
T TIGR03438        55 DEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY----PQLEVHGICADFTQPLAL  130 (301)
T ss_pred             HHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC----CCceEEEEEEcccchhhh
Confidence            3333345677899999999999999999987325789999999999999999876531    123577889998753211


Q ss_pred             CC-----CccEEEecCCCCc--------hHHHHHhhcccCcEEEEEEccCCC
Q psy7829         205 EA-----PYDVIYYGGCVSE--------VPSRVLNQLKKGGRILAPIGPMDD  243 (511)
Q Consensus       205 ~~-----~fD~I~~~~~~~~--------~~~~~~~~LkpgG~l~~~~~~~~~  243 (511)
                      ..     ...+++++..+.+        +++++.+.|+|||.+++.+.....
T Consensus       131 ~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~~  182 (301)
T TIGR03438       131 PPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKD  182 (301)
T ss_pred             hcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCCC
Confidence            12     2234444444433        347889999999999997665443

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.14  E-value=4.6e-10  Score=104.27  Aligned_cols=108  Identities=15%  Similarity=0.155  Sum_probs=79.7

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      +...+++.+.....++.+|||+|||+|.++..+++.   ..+|+|+|+|+++++.|++++...+    ...++.+.++|+
T Consensus        41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~----~~~~i~~~~~d~  113 (219)
T TIGR02021        41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRD----VAGNVEFEVNDL  113 (219)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEECCh
Confidence            344455555422356889999999999999999875   3479999999999999999987643    235799999998


Q ss_pred             CCCCCCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEE
Q psy7829         199 REGYLPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILA  236 (511)
Q Consensus       199 ~~~~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~  236 (511)
                      ....   ++||+|++...+.++        ..++.+.+++++.+.+
T Consensus       114 ~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~  156 (219)
T TIGR02021       114 LSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF  156 (219)
T ss_pred             hhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence            7643   689999987665443        2556677776554443

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.13  E-value=4.8e-10  Score=114.98  Aligned_cols=115  Identities=23%  Similarity=0.288  Sum_probs=88.1

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      +...+++.+.  ..++.+|||+|||+|.+++.+++..   .+|+|+|+|+.+++.|++|+..++     .++++++++|+
T Consensus       285 l~~~vl~~l~--~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~-----~~~v~~~~~d~  354 (443)
T PRK13168        285 MVARALEWLD--PQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNG-----LDNVTFYHANL  354 (443)
T ss_pred             HHHHHHHHhc--CCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEEeCh
Confidence            3444445443  5678899999999999999999875   479999999999999999998764     45799999998


Q ss_pred             CCCCC----CCCCccEEEecCCCCchHH--HHHhhcccCcEEEEEEccCCC
Q psy7829         199 REGYL----PEAPYDVIYYGGCVSEVPS--RVLNQLKKGGRILAPIGPMDD  243 (511)
Q Consensus       199 ~~~~~----~~~~fD~I~~~~~~~~~~~--~~~~~LkpgG~l~~~~~~~~~  243 (511)
                      .+...    ..++||+|+++++.....+  +....++|++.+++++++..-
T Consensus       355 ~~~l~~~~~~~~~fD~Vi~dPPr~g~~~~~~~l~~~~~~~ivyvSCnp~tl  405 (443)
T PRK13168        355 EEDFTDQPWALGGFDKVLLDPPRAGAAEVMQALAKLGPKRIVYVSCNPATL  405 (443)
T ss_pred             HHhhhhhhhhcCCCCEEEECcCCcChHHHHHHHHhcCCCeEEEEEeChHHh
Confidence            65321    2357999999988764432  222336899999999887653

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.12  E-value=5.8e-10  Score=98.98  Aligned_cols=103  Identities=17%  Similarity=0.195  Sum_probs=78.0

Q ss_pred             HHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC
Q psy7829         122 DAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG  201 (511)
Q Consensus       122 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  201 (511)
                      .+++.+.  +.++.+|||+|||+|.++..+++..   .+++++|+++.+++.+++++..       .++++++.+|+.+.
T Consensus         4 ~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~-------~~~v~ii~~D~~~~   71 (169)
T smart00650        4 KIVRAAN--LRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAA-------ADNLTVIHGDALKF   71 (169)
T ss_pred             HHHHhcC--CCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhcc-------CCCEEEEECchhcC
Confidence            4555554  6678899999999999999999873   4799999999999999998754       34799999999875


Q ss_pred             CCCCCCccEEEecCCCCchH---HHHHhh--cccCcEEEE
Q psy7829         202 YLPEAPYDVIYYGGCVSEVP---SRVLNQ--LKKGGRILA  236 (511)
Q Consensus       202 ~~~~~~fD~I~~~~~~~~~~---~~~~~~--LkpgG~l~~  236 (511)
                      ......||.|+++.+++...   ..+.+.  +.++|.+++
T Consensus        72 ~~~~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~  111 (169)
T smart00650       72 DLPKLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMV  111 (169)
T ss_pred             CccccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEE
Confidence            44445699999999887433   333322  235666665

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.10  E-value=5.8e-10  Score=109.16  Aligned_cols=110  Identities=14%  Similarity=0.052  Sum_probs=85.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCccEE
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYDVI  211 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I  211 (511)
                      ++.+|||+|||+|.++..+++..   .+|+|+|+++.+++.|+++++.++     .++++|+++|+.+... ..+.||+|
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~-----l~~v~~~~~D~~~~~~~~~~~~D~V  244 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELG-----LTNVQFQALDSTQFATAQGEVPDLV  244 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEEcCHHHHHHhcCCCCeEE
Confidence            57899999999999999999853   479999999999999999998864     4689999999875322 23579999


Q ss_pred             EecCCCCchHH---HHHhhcccCcEEEEEEccCCCcceEEEE
Q psy7829         212 YYGGCVSEVPS---RVLNQLKKGGRILAPIGPMDDFQKLTQI  250 (511)
Q Consensus       212 ~~~~~~~~~~~---~~~~~LkpgG~l~~~~~~~~~~~~~~~~  250 (511)
                      +++++...+..   ++...++|++.+++++.+......+..+
T Consensus       245 v~dPPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l  286 (315)
T PRK03522        245 LVNPPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL  286 (315)
T ss_pred             EECCCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc
Confidence            99988654433   3444568889999988876654443333

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=7.6e-10  Score=109.39  Aligned_cols=177  Identities=19%  Similarity=0.248  Sum_probs=121.9

Q ss_pred             cCCCCCCCCcccCCCccHHHHHHHHHHcCCCCCHH-HHHHHHhCCCC-CccCCCCCCCcccccCCCcccchhHHHHHHHH
Q psy7829          48 VIPPPDNLNHFKNEGTCQTDLVNHLRDIGKIRTER-VAQAFYKVDRG-NFANEEPYQDVSASLGYAGVMNAPNQIADAAE  125 (511)
Q Consensus        48 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~a~~~~~r~-~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~  125 (511)
                      .+.+....++.|+...+...+...|...++...+. .......+... .......|.++.+.++..+++    +.+   .
T Consensus        78 ~~~~~~~~~Rvn~lk~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~vQd~sS~----l~a---~  150 (355)
T COG0144          78 LLRPPPRSLRVNTLKADVEELLEALEEAGVLDEKPWVLDEVLRIEASGPIGRLPEFAEGLIYVQDEASQ----LPA---L  150 (355)
T ss_pred             cCCCCCeeEEEcCccCCHHHHHHHHhhcccccccCCccccEEEecCCCCcccChhhhceEEEEcCHHHH----HHH---H
Confidence            44445577888998999999999998876533222 11111111111 111122466655555543322    222   2


Q ss_pred             HHhhcCCCCCEEEEEcCCccHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC---
Q psy7829         126 NLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGP-TGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG---  201 (511)
Q Consensus       126 ~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---  201 (511)
                      .|.  .++|.+|||++++.|.-|.+++..... ...|+++|+++.-++..++|+++.     +..|+..+..|....   
T Consensus       151 ~L~--p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl-----G~~nv~~~~~d~~~~~~~  223 (355)
T COG0144         151 VLD--PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL-----GVRNVIVVNKDARRLAEL  223 (355)
T ss_pred             HcC--CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc-----CCCceEEEeccccccccc
Confidence            333  789999999999999999999999854 345699999999999999999996     466788888887632   


Q ss_pred             CCCCCCccEEEecCCCC----------------------------chHHHHHhhcccCcEEEEEE
Q psy7829         202 YLPEAPYDVIYYGGCVS----------------------------EVPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       202 ~~~~~~fD~I~~~~~~~----------------------------~~~~~~~~~LkpgG~l~~~~  238 (511)
                      ....++||.|+++++|.                            .++....+.|||||.|+.++
T Consensus       224 ~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST  288 (355)
T COG0144         224 LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST  288 (355)
T ss_pred             ccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence            22223699999999982                            22367789999999999864

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=3.3e-10  Score=106.67  Aligned_cols=132  Identities=23%  Similarity=0.253  Sum_probs=91.2

Q ss_pred             CCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccc----ccc
Q psy7829         353 GPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDL----IAN  428 (511)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~----i~~  428 (511)
                      |.+++..+...++...-.+.+|.+|||+|||||.+++.+++...  .+|+|+|+|+-.++.+++|...+++..    ...
T Consensus       142 GTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~  219 (300)
T COG2264         142 GTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELLVQAKGF  219 (300)
T ss_pred             CCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccc
Confidence            34555556666666445667999999999999999999998763  789999999999999999999888873    122


Q ss_pred             ccccccc-ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCC
Q psy7829         429 ETIEIIP-HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIST  494 (511)
Q Consensus       429 d~~~~l~-~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~  494 (511)
                      +..+... ..+|.++.|+-.+-.+        .++..+.+.++|+|.++..   ..-.+...+...+.|+
T Consensus       220 ~~~~~~~~~~~DvIVANILA~vl~--------~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf  281 (300)
T COG2264         220 LLLEVPENGPFDVIVANILAEVLV--------ELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGF  281 (300)
T ss_pred             cchhhcccCcccEEEehhhHHHHH--------HHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCC
Confidence            2222233 3677777665322111        3456777889999998754   3334555555555565

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.09  E-value=6.1e-10  Score=100.72  Aligned_cols=93  Identities=24%  Similarity=0.295  Sum_probs=72.1

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC--------
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY--------  202 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--------  202 (511)
                      ++++.+|||+|||+|.++..+++...+.++|+++|+++.+         .       .++++++++|+.+..        
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~-------~~~i~~~~~d~~~~~~~~~l~~~   93 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------P-------IENVDFIRGDFTDEEVLNKIRER   93 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------c-------CCCceEEEeeCCChhHHHHHHHH
Confidence            5789999999999999999999887667789999999864         1       125788888976531        


Q ss_pred             CCCCCccEEEecCCC-----------------CchHHHHHhhcccCcEEEEEEc
Q psy7829         203 LPEAPYDVIYYGGCV-----------------SEVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       203 ~~~~~fD~I~~~~~~-----------------~~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      ...++||+|+++.+.                 ..+...+.+.|+|||++++.+.
T Consensus        94 ~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~  147 (188)
T TIGR00438        94 VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF  147 (188)
T ss_pred             hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence            234679999987532                 1234678999999999998654

>PRK00811 spermidine synthase; Provisional

Probab=99.07  E-value=9.3e-10  Score=105.68  Aligned_cols=107  Identities=22%  Similarity=0.230  Sum_probs=81.9

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCccE
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYDV  210 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~  210 (511)
                      ..+.+||+||||.|..+..+++.. +..+|+++|+++.+++.|++++...+.+.+..++++++.+|+..... ..++||+
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv  153 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV  153 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence            456799999999999999998763 45689999999999999999887532111235689999999875322 3478999


Q ss_pred             EEecCCCC----------chHHHHHhhcccCcEEEEEEc
Q psy7829         211 IYYGGCVS----------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       211 I~~~~~~~----------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      |+++...+          .+.+.+.+.|+|||.+++..+
T Consensus       154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~  192 (283)
T PRK00811        154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG  192 (283)
T ss_pred             EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence            99975332          234688999999999987543

>PHA03412 putative methyltransferase; Provisional

Probab=99.07  E-value=1.3e-09  Score=99.04  Aligned_cols=75  Identities=19%  Similarity=0.232  Sum_probs=62.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhC--CCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVG--PTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      .+.+|||+|||+|.++..+++...  +..+|+++|+++.+++.|+++..          ++.++.+|+..... .++||+
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~----------~~~~~~~D~~~~~~-~~~FDl  117 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP----------EATWINADALTTEF-DTLFDM  117 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc----------CCEEEEcchhcccc-cCCccE
Confidence            467999999999999999998642  35689999999999999998743          47899999875332 468999


Q ss_pred             EEecCCCC
Q psy7829         211 IYYGGCVS  218 (511)
Q Consensus       211 I~~~~~~~  218 (511)
                      |++|+|+.
T Consensus       118 IIsNPPY~  125 (241)
T PHA03412        118 AISNPPFG  125 (241)
T ss_pred             EEECCCCC
Confidence            99999884

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.07  E-value=1.2e-08  Score=100.40  Aligned_cols=114  Identities=19%  Similarity=0.230  Sum_probs=79.1

Q ss_pred             HHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccc--ccccccccccccccc
Q psy7829         361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHI--DLIANETIEIIPHIL  438 (511)
Q Consensus       361 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v--~~i~~d~~~~l~~~~  438 (511)
                      ..++..  +......+|||+|||+|.+++.+++.. |..+|+++|++..+++.+++++..+++  +++.+|..+.++..+
T Consensus       186 ~lLl~~--l~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~f  262 (342)
T PRK09489        186 QLLLST--LTPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRF  262 (342)
T ss_pred             HHHHHh--ccccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCc
Confidence            344443  444455689999999999999999886 667999999999999988887765544  355566555556678


Q ss_pred             hhhhhcccCCcEEEEEc-CCccHHHHHHHHHhCCCcEEEEh
Q psy7829         439 DLCYLNLHRGAKVLEIG-SGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       439 d~i~~~l~~~~~vLD~~-~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      |.++.+.+-.. .++.. .....+.....+.|+|+|.++.+
T Consensus       263 DlIvsNPPFH~-g~~~~~~~~~~~i~~a~~~LkpgG~L~iV  302 (342)
T PRK09489        263 DMIISNPPFHD-GIQTSLDAAQTLIRGAVRHLNSGGELRIV  302 (342)
T ss_pred             cEEEECCCccC-CccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence            88888754322 11110 01234455667889999998776

>PRK06202 hypothetical protein; Provisional

Probab=99.06  E-value=1.2e-09  Score=102.35  Aligned_cols=90  Identities=17%  Similarity=0.176  Sum_probs=68.3

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCc
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMV---GPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPY  208 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  208 (511)
                      .++.+|||+|||+|.++..+++..   ++..+|+|+|+|+.+++.|+++....        ++++...+.......+++|
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~--------~~~~~~~~~~~l~~~~~~f  130 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP--------GVTFRQAVSDELVAEGERF  130 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC--------CCeEEEEecccccccCCCc
Confidence            467899999999999999888653   34568999999999999998875432        4566666554333345789


Q ss_pred             cEEEecCCCCchH--------HHHHhhcc
Q psy7829         209 DVIYYGGCVSEVP--------SRVLNQLK  229 (511)
Q Consensus       209 D~I~~~~~~~~~~--------~~~~~~Lk  229 (511)
                      |+|+++.+++++.        +++.+.++
T Consensus       131 D~V~~~~~lhh~~d~~~~~~l~~~~r~~~  159 (232)
T PRK06202        131 DVVTSNHFLHHLDDAEVVRLLADSAALAR  159 (232)
T ss_pred             cEEEECCeeecCChHHHHHHHHHHHHhcC
Confidence            9999999887664        45667776

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.05  E-value=1.7e-10  Score=94.94  Aligned_cols=57  Identities=23%  Similarity=0.482  Sum_probs=50.2

Q ss_pred             CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc----cccccccccccc
Q psy7829         373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI----STNHIDLIANET  430 (511)
Q Consensus       373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~----~~~~v~~i~~d~  430 (511)
                      |+.+|||||||+|.+++.+++.. +..+|+++|+++++++.++++.    ..+++.++++|.
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~   61 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA   61 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc
Confidence            68899999999999999999965 5699999999999999988887    257788888877

...

>PRK04266 fibrillarin; Provisional

Probab=99.05  E-value=1.6e-09  Score=100.07  Aligned_cols=131  Identities=16%  Similarity=0.206  Sum_probs=84.0

Q ss_pred             HHHHHHHHHh-hcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-cccccccccccccc--
Q psy7829         358 RSIAHILDLC-YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNHIDLIANETIEI--  433 (511)
Q Consensus       358 ~~~~~~~~~~-~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~~--  433 (511)
                      ...+.++... .+.++++.+|||+|||+|+.+..+++.++ .++|+++|+++++++...++.. ..|+.++.+|....  
T Consensus        56 ~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~  134 (226)
T PRK04266         56 KLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPER  134 (226)
T ss_pred             chHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcch
Confidence            4444555421 27888999999999999999999999884 6899999999988776544433 36788887775421  


Q ss_pred             ---ccccchhhhhcccCCcEEEEEcCC-c-cHHHHHHHHHhCCCcEEEE------h------HHHHHHHHHHHHhcCCCc
Q psy7829         434 ---IPHILDLCYLNLHRGAKVLEIGSG-S-GYLATLMAHLVGPTGHVTG------L------EHMMDIAIESIANISTNH  496 (511)
Q Consensus       434 ---l~~~~d~i~~~l~~~~~vLD~~~g-~-g~~~~~l~~~l~~~g~v~~------~------~~ml~~a~~~~~~~~~~~  496 (511)
                         ++..+|.++..         +.-. . ..+...+.+.|+|||+++.      +      ....+...+.++..|+..
T Consensus       135 ~~~l~~~~D~i~~d---------~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~  205 (226)
T PRK04266        135 YAHVVEKVDVIYQD---------VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEI  205 (226)
T ss_pred             hhhccccCCEEEEC---------CCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeE
Confidence               12224443322         1110 1 1124577788999999988      4      122233346666667644


Q ss_pred             eE
Q psy7829         497 ID  498 (511)
Q Consensus       497 i~  498 (511)
                      ++
T Consensus       206 i~  207 (226)
T PRK04266        206 LE  207 (226)
T ss_pred             EE
Confidence            43

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.05  E-value=1.9e-09  Score=99.14  Aligned_cols=103  Identities=20%  Similarity=0.177  Sum_probs=74.8

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhcc------CC-CcCCCCCeEEEEccCCCCCC
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKG------NK-DLLDSGRVRIVEADAREGYL  203 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------~~-~~~~~~~v~~~~~d~~~~~~  203 (511)
                      ..++.+|||+|||.|..+..||++.   .+|+|+|+|+.+++.+.+.....      +. ......+|++.++|+.+...
T Consensus        35 ~~~~~rvL~~gCG~G~da~~LA~~G---~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~  111 (218)
T PRK13255         35 LPAGSRVLVPLCGKSLDMLWLAEQG---HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA  111 (218)
T ss_pred             CCCCCeEEEeCCCChHhHHHHHhCC---CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc
Confidence            4567899999999999999999863   36999999999999874321110      00 00123579999999986533


Q ss_pred             C-CCCccEEEecCCCCch--------HHHHHhhcccCcEEEE
Q psy7829         204 P-EAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILA  236 (511)
Q Consensus       204 ~-~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~  236 (511)
                      . .+.||.|+....+.++        .+.+.++|||||++++
T Consensus       112 ~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        112 ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence            2 2579999977666555        3678999999997554

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.04  E-value=4.8e-10  Score=102.89  Aligned_cols=104  Identities=22%  Similarity=0.392  Sum_probs=75.6

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc---ccccccccccccc--ccccchhhhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST---NHIDLIANETIEI--IPHILDLCYL  443 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~---~~v~~i~~d~~~~--l~~~~d~i~~  443 (511)
                      +.+.+|.+|||+|||||-.++.+++.++ +++|+++|++.+|.+.++++...   .+++++.+|+..+  -+..||.+..
T Consensus        47 ~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~  125 (238)
T COG2226          47 LGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTI  125 (238)
T ss_pred             hCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEe
Confidence            4556999999999999999999999996 79999999999999998887763   4488898886543  3344554322


Q ss_pred             cccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       444 ~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..  +-+   .-...-....+++|.++|+|+++.+
T Consensus       126 ~f--glr---nv~d~~~aL~E~~RVlKpgG~~~vl  155 (238)
T COG2226         126 SF--GLR---NVTDIDKALKEMYRVLKPGGRLLVL  155 (238)
T ss_pred             ee--hhh---cCCCHHHHHHHHHHhhcCCeEEEEE
Confidence            11  100   1112223457888889999987776

>KOG4300|consensus

Probab=99.04  E-value=3.9e-10  Score=97.93  Aligned_cols=95  Identities=22%  Similarity=0.328  Sum_probs=75.8

Q ss_pred             EEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeE-EEEccCCCCC-CCCCCccEEEe
Q psy7829         136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVR-IVEADAREGY-LPEAPYDVIYY  213 (511)
Q Consensus       136 ~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~-~~~~d~~~~~-~~~~~fD~I~~  213 (511)
                      .|||+|||+|..-...--  .|..+|+++|.++.|-+.+.+.+.++     ...++. |+.+++++.+ .++++||.|++
T Consensus        79 ~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~-----k~~~~~~fvva~ge~l~~l~d~s~DtVV~  151 (252)
T KOG4300|consen   79 DVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEK-----KPLQVERFVVADGENLPQLADGSYDTVVC  151 (252)
T ss_pred             ceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhc-----cCcceEEEEeechhcCcccccCCeeeEEE
Confidence            589999999976543321  26778999999999999999998875     355676 9999998755 35799999998


Q ss_pred             cCCCC------chHHHHHhhcccCcEEEEE
Q psy7829         214 GGCVS------EVPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       214 ~~~~~------~~~~~~~~~LkpgG~l~~~  237 (511)
                      ..++.      ..+.++.++|+|||++++-
T Consensus       152 TlvLCSve~~~k~L~e~~rlLRpgG~iifi  181 (252)
T KOG4300|consen  152 TLVLCSVEDPVKQLNEVRRLLRPGGRIIFI  181 (252)
T ss_pred             EEEEeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence            76653      3458999999999999983

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=1.6e-09  Score=101.40  Aligned_cols=113  Identities=21%  Similarity=0.274  Sum_probs=84.0

Q ss_pred             HHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccc---cccccccccccc
Q psy7829         360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHID---LIANETIEIIPH  436 (511)
Q Consensus       360 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~---~i~~d~~~~l~~  436 (511)
                      +.-+++.  +....+.+|||+|||.|.+++.+|+.. |+.+++-+|++...++.+++|+..++++   ++.++..+.+..
T Consensus       147 S~lLl~~--l~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~  223 (300)
T COG2813         147 SRLLLET--LPPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEG  223 (300)
T ss_pred             HHHHHHh--CCccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccc
Confidence            4445555  666767799999999999999999987 7899999999988888888888766654   567777777777


Q ss_pred             cchhhhhcccCC--cEEEE-EcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         437 ILDLCYLNLHRG--AKVLE-IGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       437 ~~d~i~~~l~~~--~~vLD-~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .||.|.+|.+-.  ..+.+ ++  . .+.....+.|++||++..+
T Consensus       224 kfd~IisNPPfh~G~~v~~~~~--~-~~i~~A~~~L~~gGeL~iV  265 (300)
T COG2813         224 KFDLIISNPPFHAGKAVVHSLA--Q-EIIAAAARHLKPGGELWIV  265 (300)
T ss_pred             cccEEEeCCCccCCcchhHHHH--H-HHHHHHHHhhccCCEEEEE
Confidence            899999887643  22221 11  0 2234556788999998777

>KOG2915|consensus

Probab=99.03  E-value=3.3e-09  Score=96.22  Aligned_cols=123  Identities=22%  Similarity=0.254  Sum_probs=100.5

Q ss_pred             CCcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCC
Q psy7829         110 YAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG  189 (511)
Q Consensus       110 ~~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~  189 (511)
                      +..+|..+.-.+.++..|.  ++||.+|+|-|+|+|.++.++++.++|.++++.+|+.+...+.|++.+++.+    ..+
T Consensus        84 hRTQI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg----i~~  157 (314)
T KOG2915|consen   84 HRTQILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG----IGD  157 (314)
T ss_pred             CcceEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC----CCc
Confidence            3445555555677888887  9999999999999999999999999999999999999999999999999987    577


Q ss_pred             CeEEEEccCCC-CCCC-CCCccEEEecCCCCchH-HHHHhhcccCcEEEEEE
Q psy7829         190 RVRIVEADARE-GYLP-EAPYDVIYYGGCVSEVP-SRVLNQLKKGGRILAPI  238 (511)
Q Consensus       190 ~v~~~~~d~~~-~~~~-~~~fD~I~~~~~~~~~~-~~~~~~LkpgG~l~~~~  238 (511)
                      |+++.+-|+.. ++.. ...+|.|+.+.+.+|.. .-+.+.||.+|.-++++
T Consensus       158 ~vt~~hrDVc~~GF~~ks~~aDaVFLDlPaPw~AiPha~~~lk~~g~r~csF  209 (314)
T KOG2915|consen  158 NVTVTHRDVCGSGFLIKSLKADAVFLDLPAPWEAIPHAAKILKDEGGRLCSF  209 (314)
T ss_pred             ceEEEEeecccCCccccccccceEEEcCCChhhhhhhhHHHhhhcCceEEec
Confidence            99999999874 3332 57899999998887653 45566899888555543

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.03  E-value=5.6e-09  Score=108.24  Aligned_cols=63  Identities=19%  Similarity=0.200  Sum_probs=52.2

Q ss_pred             CcEEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCCCceEEEechHHHHHhhC
Q psy7829         448 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDLIANETIEIIREF  511 (511)
Q Consensus       448 ~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~~~i~~i~~d~~~~~~~~  511 (511)
                      +..+||+|||.|.++..+|+.. |.-.++|+   ...+..+.+++...++.|+.++++|+..+.+.|
T Consensus       348 ~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~  413 (506)
T PRK01544        348 RKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDL  413 (506)
T ss_pred             CceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhc
Confidence            4589999999999999999885 88899999   666777777778888889999999987665543

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.03  E-value=7.8e-10  Score=110.60  Aligned_cols=102  Identities=19%  Similarity=0.177  Sum_probs=79.4

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC----CCC
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL----PEA  206 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~  206 (511)
                      ..++.+|||+|||+|.+++.++..  ...+|+++|+|+.+++.|++|+..++.   ..++++++++|+.+...    ..+
T Consensus       218 ~~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl---~~~~v~~i~~D~~~~l~~~~~~~~  292 (396)
T PRK15128        218 YVENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKL---DLSKAEFVRDDVFKLLRTYRDRGE  292 (396)
T ss_pred             hcCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCC---CCCcEEEEEccHHHHHHHHHhcCC
Confidence            346889999999999998876643  345899999999999999999998761   22479999999875321    235


Q ss_pred             CccEEEecCCCCc---------------hHHHHHhhcccCcEEEEE
Q psy7829         207 PYDVIYYGGCVSE---------------VPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       207 ~fD~I~~~~~~~~---------------~~~~~~~~LkpgG~l~~~  237 (511)
                      +||+|++++|...               +...+.++|+|||.+++.
T Consensus       293 ~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~  338 (396)
T PRK15128        293 KFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTF  338 (396)
T ss_pred             CCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            7999999988621               113567899999999863

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.03  E-value=2.4e-09  Score=95.66  Aligned_cols=112  Identities=19%  Similarity=0.209  Sum_probs=76.4

Q ss_pred             CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHH---Hhhccccccccccccccccc-cccchhhhhcccCC
Q psy7829         373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIES---IANISTNHIDLIANETIEII-PHILDLCYLNLHRG  448 (511)
Q Consensus       373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~---~~~~~~~~v~~i~~d~~~~l-~~~~d~i~~~l~~~  448 (511)
                      ++.+|||+|||+|++++.++... ++++|+++|.++++++.+   .++.+.++++++++|..+.. ...+|.++.+.   
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~---  117 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA---  117 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh---
Confidence            58999999999999999998765 678999999998766544   44455667889988876532 23455544421   


Q ss_pred             cEEEEEcCCccHHHHHHHHHhCCCcEEEEh-----HHHHHHHHHHHHhcCC
Q psy7829         449 AKVLEIGSGSGYLATLMAHLVGPTGHVTGL-----EHMMDIAIESIANIST  494 (511)
Q Consensus       449 ~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~-----~~ml~~a~~~~~~~~~  494 (511)
                            -...-.+...+.+.++|+|.++..     ..-+....++....|+
T Consensus       118 ------~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~  162 (181)
T TIGR00138       118 ------LASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGV  162 (181)
T ss_pred             ------hhCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCc
Confidence                  012223445667889999998877     3334445555555655

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.01  E-value=1.7e-09  Score=96.82  Aligned_cols=98  Identities=20%  Similarity=0.254  Sum_probs=71.5

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhh---ccccccccccccccccc-cccchhhhhccc
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIAN---ISTNHIDLIANETIEII-PHILDLCYLNLH  446 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~---~~~~~v~~i~~d~~~~l-~~~~d~i~~~l~  446 (511)
                      ++++.+|||+|||+|..++.+++.. +.++|+++|+++++++.++++   .+.++++++.++..+.. ...+|.++.+. 
T Consensus        43 l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~-  120 (187)
T PRK00107         43 LPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRA-  120 (187)
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEcc-
Confidence            4468999999999999999999876 678999999998877765554   44556788888765432 22455554421 


Q ss_pred             CCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         447 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       447 ~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                              ......+...+++.++|+|.++.+
T Consensus       121 --------~~~~~~~l~~~~~~LkpGG~lv~~  144 (187)
T PRK00107        121 --------VASLSDLVELCLPLLKPGGRFLAL  144 (187)
T ss_pred             --------ccCHHHHHHHHHHhcCCCeEEEEE
Confidence                    123345667788999999999888

>KOG2915|consensus

Probab=99.00  E-value=2.8e-09  Score=96.67  Aligned_cols=134  Identities=22%  Similarity=0.335  Sum_probs=94.9

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----cccccccccc----
Q psy7829         358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANE----  429 (511)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d----  429 (511)
                      .+++.++.+  +++.||.+|+|-|+|+|.++..+++.++|.|+++++|.+...+++|.+.++    ..|+++...|    
T Consensus        92 ~Dia~I~~~--L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~  169 (314)
T KOG2915|consen   92 PDIAMILSM--LEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGS  169 (314)
T ss_pred             ccHHHHHHH--hcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccC
Confidence            457788887  999999999999999999999999999999999999999999999988776    3556665444    


Q ss_pred             ccccccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCC-CcEEEEhHHHHHHHHHHHHh---cCCCceEEEech
Q psy7829         430 TIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGP-TGHVTGLEHMMDIAIESIAN---ISTNHIDLIANE  503 (511)
Q Consensus       430 ~~~~l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~-~g~v~~~~~ml~~a~~~~~~---~~~~~i~~i~~d  503 (511)
                      ....-...+|.++.+++..+..+          ..+++.++. ||+++.+...+|+.++.++.   .|+..|+.+.-.
T Consensus       170 GF~~ks~~aDaVFLDlPaPw~Ai----------Pha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~~vEv~  237 (314)
T KOG2915|consen  170 GFLIKSLKADAVFLDLPAPWEAI----------PHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIETVEVL  237 (314)
T ss_pred             CccccccccceEEEcCCChhhhh----------hhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceEEEEEee
Confidence            22222444555555555554443          334445544 44888887777777665544   455445554433

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.00  E-value=3.2e-09  Score=99.66  Aligned_cols=100  Identities=21%  Similarity=0.247  Sum_probs=79.1

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC-CCCCCcc
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY-LPEAPYD  209 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD  209 (511)
                      ..++.+|||+|||+|.++..+++..   .+++++|+++.+++.+++++...+      .+++++..|..... ...+.||
T Consensus        46 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~fD  116 (233)
T PRK05134         46 GLFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESG------LKIDYRQTTAEELAAEHPGQFD  116 (233)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcC------CceEEEecCHHHhhhhcCCCcc
Confidence            4578899999999999999888753   469999999999999999887643      25788888876432 1347899


Q ss_pred             EEEecCCCCch------HHHHHhhcccCcEEEEEEc
Q psy7829         210 VIYYGGCVSEV------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       210 ~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~  239 (511)
                      +|++...++++      .+.+.+.|+|||.+++...
T Consensus       117 ~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134        117 VVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             EEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence            99997766543      4788999999999998643

>PHA03411 putative methyltransferase; Provisional

Probab=99.00  E-value=3.8e-09  Score=98.36  Aligned_cols=77  Identities=23%  Similarity=0.264  Sum_probs=63.1

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ..++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.+++++.          +++++++|+.+.. ....||+
T Consensus        62 ~~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~~----------~v~~v~~D~~e~~-~~~kFDl  129 (279)
T PHA03411         62 AHCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLLP----------EAEWITSDVFEFE-SNEKFDV  129 (279)
T ss_pred             cccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCc----------CCEEEECchhhhc-ccCCCcE
Confidence            3456799999999999999888875 34689999999999999988632          5889999988644 3368999


Q ss_pred             EEecCCCCc
Q psy7829         211 IYYGGCVSE  219 (511)
Q Consensus       211 I~~~~~~~~  219 (511)
                      |++++++.+
T Consensus       130 IIsNPPF~~  138 (279)
T PHA03411        130 VISNPPFGK  138 (279)
T ss_pred             EEEcCCccc
Confidence            999998854

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.99  E-value=2.1e-09  Score=102.23  Aligned_cols=105  Identities=22%  Similarity=0.276  Sum_probs=76.8

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc------cccccccccccccc--ccccchh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS------TNHIDLIANETIEI--IPHILDL  440 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~------~~~v~~i~~d~~~~--l~~~~d~  440 (511)
                      +.+.++.+|||+|||+|.++..+++..+++++|+|+|++++|++.++++..      ..+++++++|..+.  .+..+|.
T Consensus        69 ~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~  148 (261)
T PLN02233         69 SGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDA  148 (261)
T ss_pred             hCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeE
Confidence            567889999999999999999999887777899999999999998876543      34688888875442  2234665


Q ss_pred             hhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         441 CYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       441 i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ++....     +-..........++.+.|+|||.++.+
T Consensus       149 V~~~~~-----l~~~~d~~~~l~ei~rvLkpGG~l~i~  181 (261)
T PLN02233        149 ITMGYG-----LRNVVDRLKAMQEMYRVLKPGSRVSIL  181 (261)
T ss_pred             EEEecc-----cccCCCHHHHHHHHHHHcCcCcEEEEE
Confidence            544221     101113445667888999999998765

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.99  E-value=4.7e-09  Score=101.80  Aligned_cols=113  Identities=22%  Similarity=0.346  Sum_probs=83.0

Q ss_pred             CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---ccccccccccccc
Q psy7829         355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETI  431 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~  431 (511)
                      ..|...+++++.  +.++++++|||+|||+|+++..+++.+++.++|+++|+++++++.+++++   +..++.++++|..
T Consensus        64 ~~p~l~a~ll~~--L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~  141 (322)
T PRK13943         64 SQPSLMALFMEW--VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGY  141 (322)
T ss_pred             CcHHHHHHHHHh--cCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChh
Confidence            467778888887  77889999999999999999999998865578999999999888776654   4566778877765


Q ss_pred             ccccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         432 EIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       432 ~~l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +..+..        .+-+.|+ +++|...+...+.+.++|+|+++..
T Consensus       142 ~~~~~~--------~~fD~Ii-~~~g~~~ip~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        142 YGVPEF--------APYDVIF-VTVGVDEVPETWFTQLKEGGRVIVP  179 (322)
T ss_pred             hccccc--------CCccEEE-ECCchHHhHHHHHHhcCCCCEEEEE
Confidence            433211        1122333 3345445666777888999987764

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.98  E-value=2.5e-09  Score=97.24  Aligned_cols=95  Identities=20%  Similarity=0.364  Sum_probs=71.9

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC--CCCCC
Q psy7829         130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY--LPEAP  207 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~  207 (511)
                      .++++.+|||+|||+|.++..+++..  ...++++|+++++++.++++            +++++++|+.+..  ..+++
T Consensus        10 ~i~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~------------~~~~~~~d~~~~l~~~~~~s   75 (194)
T TIGR02081        10 LIPPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR------------GVNVIQGDLDEGLEAFPDKS   75 (194)
T ss_pred             hcCCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc------------CCeEEEEEhhhcccccCCCC
Confidence            35578899999999999999888764  34689999999999888642            4678888886522  23478


Q ss_pred             ccEEEecCCCCchH---HHHHhhcccCcEEEEEE
Q psy7829         208 YDVIYYGGCVSEVP---SRVLNQLKKGGRILAPI  238 (511)
Q Consensus       208 fD~I~~~~~~~~~~---~~~~~~LkpgG~l~~~~  238 (511)
                      ||+|+++.+++++.   ..+.+.+++++.+++.+
T Consensus        76 fD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii~~  109 (194)
T TIGR02081        76 FDYVILSQTLQATRNPEEILDEMLRVGRHAIVSF  109 (194)
T ss_pred             cCEEEEhhHhHcCcCHHHHHHHHHHhCCeEEEEc
Confidence            99999999887663   34555667777776654

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.98  E-value=6.1e-09  Score=100.81  Aligned_cols=97  Identities=15%  Similarity=0.132  Sum_probs=70.8

Q ss_pred             HHHHHHHHHhhc-CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc
Q psy7829         119 QIADAAENLKLH-LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD  197 (511)
Q Consensus       119 ~~~~~~~~l~~~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  197 (511)
                      +...+++.+... ..++.+|||+|||+|.++..+++..   .+|+++|+|+.|++.+++++...+.......+++|..+|
T Consensus       129 ~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~D  205 (315)
T PLN02585        129 TVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAND  205 (315)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcc
Confidence            445556666421 1257899999999999999999862   479999999999999999987631100013468899998


Q ss_pred             CCCCCCCCCCccEEEecCCCCchH
Q psy7829         198 AREGYLPEAPYDVIYYGGCVSEVP  221 (511)
Q Consensus       198 ~~~~~~~~~~fD~I~~~~~~~~~~  221 (511)
                      +...   .++||+|++..++.+++
T Consensus       206 l~~l---~~~fD~Vv~~~vL~H~p  226 (315)
T PLN02585        206 LESL---SGKYDTVTCLDVLIHYP  226 (315)
T ss_pred             hhhc---CCCcCEEEEcCEEEecC
Confidence            7542   37899999988876654

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.97  E-value=5.9e-09  Score=97.66  Aligned_cols=92  Identities=16%  Similarity=0.223  Sum_probs=69.7

Q ss_pred             HHHHHHHHHhh-cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc
Q psy7829         119 QIADAAENLKL-HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD  197 (511)
Q Consensus       119 ~~~~~~~~l~~-~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  197 (511)
                      ....+++.+.. ...++.+|||+|||+|.++..+++..   .+|+++|+|+.+++.|++++...+    ..+++++..+|
T Consensus        48 ~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~----~~~~i~~~~~d  120 (230)
T PRK07580         48 MRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAG----LAGNITFEVGD  120 (230)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC----CccCcEEEEcC
Confidence            33445555542 13567899999999999999998764   359999999999999999987753    22579999999


Q ss_pred             CCCCCCCCCCccEEEecCCCCch
Q psy7829         198 AREGYLPEAPYDVIYYGGCVSEV  220 (511)
Q Consensus       198 ~~~~~~~~~~fD~I~~~~~~~~~  220 (511)
                      +..   ..++||+|++..+++++
T Consensus       121 ~~~---~~~~fD~v~~~~~l~~~  140 (230)
T PRK07580        121 LES---LLGRFDTVVCLDVLIHY  140 (230)
T ss_pred             chh---ccCCcCEEEEcchhhcC
Confidence            532   24789999998877543

>PRK01581 speE spermidine synthase; Validated

Probab=98.97  E-value=4.3e-09  Score=101.79  Aligned_cols=105  Identities=25%  Similarity=0.242  Sum_probs=78.4

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH--HhccCCCcCCCCCeEEEEccCCCCCC-CCCCc
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN--ISKGNKDLLDSGRVRIVEADAREGYL-PEAPY  208 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~--~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~f  208 (511)
                      ....+||++|||.|..+..+.+.. +..+|+++|+++++++.|++.  +...+.+.+..++++++.+|+.+... ..+.|
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y  227 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY  227 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence            456799999999999888888753 567899999999999999972  11111011245789999999875322 24679


Q ss_pred             cEEEecCCCC-----------chHHHHHhhcccCcEEEEE
Q psy7829         209 DVIYYGGCVS-----------EVPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       209 D~I~~~~~~~-----------~~~~~~~~~LkpgG~l~~~  237 (511)
                      |+|+++.+-+           .+.+.+.+.|+|||.+++-
T Consensus       228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q  267 (374)
T PRK01581        228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ  267 (374)
T ss_pred             cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            9999986432           1347889999999999875

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.97  E-value=7.2e-09  Score=89.59  Aligned_cols=90  Identities=24%  Similarity=0.245  Sum_probs=71.1

Q ss_pred             hHHHHHHHHHHh-hcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEE
Q psy7829         117 PNQIADAAENLK-LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE  195 (511)
Q Consensus       117 p~~~~~~~~~l~-~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  195 (511)
                      +.+.+.++.... ...-.|..|+|+|||||.+++..+-.. + .+|+++|+++++++.+++|+++      ...++.|++
T Consensus        28 ~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lG-a-~~V~~vdiD~~a~ei~r~N~~~------l~g~v~f~~   99 (198)
T COG2263          28 APLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLG-A-SRVLAVDIDPEALEIARANAEE------LLGDVEFVV   99 (198)
T ss_pred             hHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcC-C-cEEEEEecCHHHHHHHHHHHHh------hCCceEEEE
Confidence            445555554442 122367789999999999999887764 3 6899999999999999999998      355899999


Q ss_pred             ccCCCCCCCCCCccEEEecCCC
Q psy7829         196 ADAREGYLPEAPYDVIYYGGCV  217 (511)
Q Consensus       196 ~d~~~~~~~~~~fD~I~~~~~~  217 (511)
                      +|+.+.   .+.+|.++.|+++
T Consensus       100 ~dv~~~---~~~~dtvimNPPF  118 (198)
T COG2263         100 ADVSDF---RGKFDTVIMNPPF  118 (198)
T ss_pred             cchhhc---CCccceEEECCCC
Confidence            999763   3679999999988

>PLN02366 spermidine synthase

Probab=98.97  E-value=6.1e-09  Score=100.46  Aligned_cols=103  Identities=23%  Similarity=0.224  Sum_probs=80.5

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC--CCCCcc
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL--PEAPYD  209 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD  209 (511)
                      .++.+||+||||.|..+..+++.. +..+|+.+|+++.+++.|++.+...+.+ +..++++++.+|+.....  +.+.||
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~-~~dpRv~vi~~Da~~~l~~~~~~~yD  167 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVG-FDDPRVNLHIGDGVEFLKNAPEGTYD  167 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccc-cCCCceEEEEChHHHHHhhccCCCCC
Confidence            467899999999999999998763 4568999999999999999988653211 245689999999864221  236799


Q ss_pred             EEEecCCCC----------chHHHHHhhcccCcEEEE
Q psy7829         210 VIYYGGCVS----------EVPSRVLNQLKKGGRILA  236 (511)
Q Consensus       210 ~I~~~~~~~----------~~~~~~~~~LkpgG~l~~  236 (511)
                      +|+++..-+          .+.+.+.+.|+|||.++.
T Consensus       168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~  204 (308)
T PLN02366        168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT  204 (308)
T ss_pred             EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence            999986542          235788999999999976

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.96  E-value=7.2e-09  Score=92.44  Aligned_cols=112  Identities=22%  Similarity=0.174  Sum_probs=81.4

Q ss_pred             ccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCce---------EEEEeCCHHHHHHHHHHHhccCC
Q psy7829         113 VMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGK---------VIGVEHIPELIEASLRNISKGNK  183 (511)
Q Consensus       113 ~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~---------v~~iD~~~~~~~~a~~~~~~~~~  183 (511)
                      ...+|.+.+.++.+..  .+++..|||-.||+|.+.+..+... ....         ++|.|+++.+++.|++|++..+ 
T Consensus        10 a~L~~~lA~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~-~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag-   85 (179)
T PF01170_consen   10 APLRPTLAAALLNLAG--WRPGDVVLDPFCGSGTILIEAALMG-ANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG-   85 (179)
T ss_dssp             TSS-HHHHHHHHHHTT----TTS-EEETT-TTSHHHHHHHHHH-TTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-
T ss_pred             CCCCHHHHHHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHh-hCcccccccccccEEecCCCHHHHHHHHHHHHhcc-
Confidence            3446777777777665  7789999999999999999888776 4444         8999999999999999999876 


Q ss_pred             CcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCC--------------chHHHHHhhcccC
Q psy7829         184 DLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVS--------------EVPSRVLNQLKKG  231 (511)
Q Consensus       184 ~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~--------------~~~~~~~~~Lkpg  231 (511)
                         ....+.+.+.|+.+.....+++|.|++++++-              .+.+++.+.|++.
T Consensus        86 ---~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~  144 (179)
T PF01170_consen   86 ---VEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPR  144 (179)
T ss_dssp             ----CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTC
T ss_pred             ---cCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCC
Confidence               34568999999987554457899999999982              2236778889993

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.96  E-value=2.4e-09  Score=101.95  Aligned_cols=144  Identities=20%  Similarity=0.230  Sum_probs=98.0

Q ss_pred             ccccCCCCCCCCCceeeeccccccccCCCCCCCCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcE
Q psy7829         321 KWIPQPPGYTTPGEITTRDKYGRLVHGSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGH  400 (511)
Q Consensus       321 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~  400 (511)
                      +.+.+..+|...++...+..+|+....      |...+.+..++..  +.+.++.+|||||||+|..+..+++..+  .+
T Consensus         8 ~~~~~~~~y~~~~~~~~e~~~g~~~~~------~gg~~~~~~~l~~--l~l~~~~~VLDiGcG~G~~a~~la~~~~--~~   77 (263)
T PTZ00098          8 ITYLENNQYSDEGIKAYEFIFGEDYIS------SGGIEATTKILSD--IELNENSKVLDIGSGLGGGCKYINEKYG--AH   77 (263)
T ss_pred             hhhhhccccccccchhHHHHhCCCCCC------CCchHHHHHHHHh--CCCCCCCEEEEEcCCCChhhHHHHhhcC--CE
Confidence            455666778888887777777643332      3444556677776  7889999999999999999999987653  79


Q ss_pred             EEEEcCCHHHHHHHHhhcc-cccccccccccccc--ccccchhhhhcccCCcEEEEEcC-CccHHHHHHHHHhCCCcEEE
Q psy7829         401 VTGLEHMMDIAIESIANIS-TNHIDLIANETIEI--IPHILDLCYLNLHRGAKVLEIGS-GSGYLATLMAHLVGPTGHVT  476 (511)
Q Consensus       401 v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~~--l~~~~d~i~~~l~~~~~vLD~~~-g~g~~~~~l~~~l~~~g~v~  476 (511)
                      |+++|++++++..++++.. ..++.++.+|....  .+..+|.++...    .++.++. ..-.+...+++.|+|+|.++
T Consensus        78 v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~----~l~h~~~~d~~~~l~~i~r~LkPGG~lv  153 (263)
T PTZ00098         78 VHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRD----AILHLSYADKKKLFEKCYKWLKPNGILL  153 (263)
T ss_pred             EEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhh----hHHhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence            9999999999998887765 34577777765432  223455544311    0010110 22345567788889999987


Q ss_pred             Eh
Q psy7829         477 GL  478 (511)
Q Consensus       477 ~~  478 (511)
                      ..
T Consensus       154 i~  155 (263)
T PTZ00098        154 IT  155 (263)
T ss_pred             EE
Confidence            65

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=98.96  E-value=4.9e-09  Score=96.21  Aligned_cols=134  Identities=21%  Similarity=0.287  Sum_probs=94.7

Q ss_pred             hcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccc----ccccccccccccc----ccch
Q psy7829         368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH----IDLIANETIEIIP----HILD  439 (511)
Q Consensus       368 ~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~----v~~i~~d~~~~l~----~~~d  439 (511)
                      ...+....+|||+|||+|..++.+|++. +..++++||+++++++.|.+|+..++    ++++++|...+..    ..+|
T Consensus        39 ~~~~~~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD  117 (248)
T COG4123          39 FAPVPKKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFD  117 (248)
T ss_pred             hcccccCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccC
Confidence            4666778999999999999999999997 45999999999999999999988644    6788888544432    2367


Q ss_pred             hhhhcccCCcEEE-------------EEcCCccHHHHHHHHHhCCCcEEEEh--HHHHHHHHHHHHhcCC--CceEEEec
Q psy7829         440 LCYLNLHRGAKVL-------------EIGSGSGYLATLMAHLVGPTGHVTGL--EHMMDIAIESIANIST--NHIDLIAN  502 (511)
Q Consensus       440 ~i~~~l~~~~~vL-------------D~~~g~g~~~~~l~~~l~~~g~v~~~--~~ml~~a~~~~~~~~~--~~i~~i~~  502 (511)
                      .+.+|.+....--             .+.|.--.+....++.++|+|.+..+  ++-+...-..+.+.++  .++.+|+.
T Consensus       118 ~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~i~~V~p  197 (248)
T COG4123         118 LIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKRIQFVYP  197 (248)
T ss_pred             EEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceEEEEecC
Confidence            7777654322111             12344555566677889999999988  4444444444455444  56777654

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.96  E-value=2e-09  Score=116.11  Aligned_cols=103  Identities=17%  Similarity=0.170  Sum_probs=82.2

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCccE
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYDV  210 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~  210 (511)
                      .++.+|||+|||+|.+++.++...  ..+|+++|+|+.+++.|++|++.++.   ...+++++++|+.+... ..++||+
T Consensus       537 ~~g~rVLDlf~gtG~~sl~aa~~G--a~~V~~vD~s~~al~~a~~N~~~ng~---~~~~v~~i~~D~~~~l~~~~~~fDl  611 (702)
T PRK11783        537 AKGKDFLNLFAYTGTASVHAALGG--AKSTTTVDMSNTYLEWAERNFALNGL---SGRQHRLIQADCLAWLKEAREQFDL  611 (702)
T ss_pred             cCCCeEEEcCCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCC---CccceEEEEccHHHHHHHcCCCcCE
Confidence            368899999999999999999853  34799999999999999999998762   22579999999865321 1368999


Q ss_pred             EEecCCCC-----------------chHHHHHhhcccCcEEEEEEc
Q psy7829         211 IYYGGCVS-----------------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       211 I~~~~~~~-----------------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      |+++++..                 .+...+.+.|+|||.+++...
T Consensus       612 IilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~  657 (702)
T PRK11783        612 IFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN  657 (702)
T ss_pred             EEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            99998751                 123567889999999988654

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.95  E-value=8.3e-09  Score=95.27  Aligned_cols=108  Identities=24%  Similarity=0.383  Sum_probs=80.4

Q ss_pred             CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---ccccccccccccc
Q psy7829         355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETI  431 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~  431 (511)
                      .+|..+++++..  +.+.++.+|||+|||+|+.+..+++..   ++|+++|+++++++.+++++   +..+++++.+|..
T Consensus        62 ~~p~~~~~l~~~--l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~  136 (212)
T PRK00312         62 SQPYMVARMTEL--LELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGW  136 (212)
T ss_pred             CcHHHHHHHHHh--cCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcc
Confidence            567888888887  788899999999999999999998876   58999999998888777665   4556788887764


Q ss_pred             cccc--ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         432 EIIP--HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       432 ~~l~--~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +..+  ..+|.++.           .+....+...+.+.|+|+|.++..
T Consensus       137 ~~~~~~~~fD~I~~-----------~~~~~~~~~~l~~~L~~gG~lv~~  174 (212)
T PRK00312        137 KGWPAYAPFDRILV-----------TAAAPEIPRALLEQLKEGGILVAP  174 (212)
T ss_pred             cCCCcCCCcCEEEE-----------ccCchhhhHHHHHhcCCCcEEEEE
Confidence            4332  23443332           222234556778889999998765

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.95  E-value=8.5e-09  Score=96.17  Aligned_cols=113  Identities=18%  Similarity=0.226  Sum_probs=84.2

Q ss_pred             HHHHHHHHHhhc--CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829         119 QIADAAENLKLH--LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA  196 (511)
Q Consensus       119 ~~~~~~~~l~~~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  196 (511)
                      ....+.+.+...  ...+.+|||+|||+|.++..+++..   .+++++|+++.+++.+++++...+     ..++++...
T Consensus        29 ~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~-----~~~~~~~~~  100 (224)
T TIGR01983        29 RLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDP-----LLKIEYRCT  100 (224)
T ss_pred             HHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEeC
Confidence            344555555421  1247799999999999999888753   359999999999999999887643     236888888


Q ss_pred             cCCCCCCC-CCCccEEEecCCCCc------hHHHHHhhcccCcEEEEEEc
Q psy7829         197 DAREGYLP-EAPYDVIYYGGCVSE------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       197 d~~~~~~~-~~~fD~I~~~~~~~~------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      |+.+.... .++||+|++...+++      +++++.+.|+|||.+++...
T Consensus       101 d~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983       101 SVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             CHHHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence            87653322 368999999866543      34788999999999987543

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.95  E-value=7.3e-09  Score=83.29  Aligned_cols=95  Identities=26%  Similarity=0.370  Sum_probs=76.2

Q ss_pred             EEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCccEEEec
Q psy7829         136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYDVIYYG  214 (511)
Q Consensus       136 ~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I~~~  214 (511)
                      +++|+|||+|..+..+++ . ...+++++|+++..++.+++.....     ...+++++..|..+... ..++||+|+++
T Consensus         1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~i~~~   73 (107)
T cd02440           1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAAL-----LADNVEVLKGDAEELPPEADESFDVIISD   73 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhcc-----cccceEEEEcChhhhccccCCceEEEEEc
Confidence            489999999999999988 2 5678999999999999988543332     35678999999876443 34789999999


Q ss_pred             CCCCc-------hHHHHHhhcccCcEEEEE
Q psy7829         215 GCVSE-------VPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       215 ~~~~~-------~~~~~~~~LkpgG~l~~~  237 (511)
                      .+++.       +.+.+.+.|+|||.+++.
T Consensus        74 ~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          74 PPLHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             cceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            88854       336788999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.95  E-value=3.8e-10  Score=107.55  Aligned_cols=116  Identities=22%  Similarity=0.243  Sum_probs=76.7

Q ss_pred             CCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccc--ccc
Q psy7829         353 GPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIA--NET  430 (511)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~--~d~  430 (511)
                      |.+++..+..++++..-...+|.+|||+|||||.+++.+++.. . .+|+|+|+++..++.+++|...+++.-..  ...
T Consensus       141 GTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klG-A-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~  218 (295)
T PF06325_consen  141 GTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLG-A-KKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS  218 (295)
T ss_dssp             -SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTT-B-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT
T ss_pred             cCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcC-C-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe
Confidence            4556666766666644456789999999999999999998765 3 78999999999999999998877654311  112


Q ss_pred             cccccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         431 IEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       431 ~~~l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .+.....+|.++.|+..+-.+        .+...+.+.++|+|.++..
T Consensus       219 ~~~~~~~~dlvvANI~~~vL~--------~l~~~~~~~l~~~G~lIlS  258 (295)
T PF06325_consen  219 EDLVEGKFDLVVANILADVLL--------ELAPDIASLLKPGGYLILS  258 (295)
T ss_dssp             SCTCCS-EEEEEEES-HHHHH--------HHHHHCHHHEEEEEEEEEE
T ss_pred             cccccccCCEEEECCCHHHHH--------HHHHHHHHhhCCCCEEEEc
Confidence            222335566666665322110        2334556778999988744

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=98.94  E-value=9.7e-10  Score=102.09  Aligned_cols=105  Identities=19%  Similarity=0.341  Sum_probs=65.4

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccccccc--ccccchhhhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEI--IPHILDLCYL  443 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~--l~~~~d~i~~  443 (511)
                      +...+|.+|||+|||||.++..+++..+++++|+++|++++|.+.++++..   ..+++++++|+...  -+..+|.+..
T Consensus        43 ~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~  122 (233)
T PF01209_consen   43 LGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTC  122 (233)
T ss_dssp             HT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEE
T ss_pred             cCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEH
Confidence            567889999999999999999999988888999999999999999887654   45889998886443  3344554432


Q ss_pred             cccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       444 ~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ...-. .+    +.......++.+.|+|||+++.+
T Consensus       123 ~fglr-n~----~d~~~~l~E~~RVLkPGG~l~il  152 (233)
T PF01209_consen  123 SFGLR-NF----PDRERALREMYRVLKPGGRLVIL  152 (233)
T ss_dssp             ES-GG-G-----SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HhhHH-hh----CCHHHHHHHHHHHcCCCeEEEEe
Confidence            21100 00    12233457788888888888776

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.93  E-value=3.8e-09  Score=92.09  Aligned_cols=101  Identities=17%  Similarity=0.286  Sum_probs=72.1

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhh---cccccccccccccccccc----ccchhhhhc
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIAN---ISTNHIDLIANETIEIIP----HILDLCYLN  444 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~---~~~~~v~~i~~d~~~~l~----~~~d~i~~~  444 (511)
                      +.+.+|||+|||+|.++..+++..+++++++++|+++++++.+.++   .+..+++++++|..+ ++    ..+|.++..
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~   80 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISN   80 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEc
Confidence            4688999999999999999997666789999999999999988774   556789999988776 44    234544332


Q ss_pred             ccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         445 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       445 l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..-     ..-...-.+...+.+.++++|.++..
T Consensus        81 ~~l-----~~~~~~~~~l~~~~~~lk~~G~~i~~  109 (152)
T PF13847_consen   81 GVL-----HHFPDPEKVLKNIIRLLKPGGILIIS  109 (152)
T ss_dssp             STG-----GGTSHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             Cch-----hhccCHHHHHHHHHHHcCCCcEEEEE
Confidence            110     00111223456778889999988766

...

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.93  E-value=7.4e-09  Score=103.63  Aligned_cols=119  Identities=12%  Similarity=0.036  Sum_probs=87.5

Q ss_pred             hHHHHHHHHHHhhc--CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEE
Q psy7829         117 PNQIADAAENLKLH--LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIV  194 (511)
Q Consensus       117 p~~~~~~~~~l~~~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~  194 (511)
                      +.....+.+.+...  ..++.+|||+|||+|.+++.++...   .+|+++|+++.+++.|++|++.++     .++++|+
T Consensus       215 ~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~-----~~~~~~~  286 (374)
T TIGR02085       215 PKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLG-----LDNLSFA  286 (374)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcC-----CCcEEEE
Confidence            33444444433322  2356799999999999999999653   479999999999999999998864     4589999


Q ss_pred             EccCCCCCC-CCCCccEEEecCCCCchHHH---HHhhcccCcEEEEEEccCCC
Q psy7829         195 EADAREGYL-PEAPYDVIYYGGCVSEVPSR---VLNQLKKGGRILAPIGPMDD  243 (511)
Q Consensus       195 ~~d~~~~~~-~~~~fD~I~~~~~~~~~~~~---~~~~LkpgG~l~~~~~~~~~  243 (511)
                      .+|+.+... ...+||+|+++++...+...   ....++|++.+++++.+..-
T Consensus       287 ~~d~~~~~~~~~~~~D~vi~DPPr~G~~~~~l~~l~~~~p~~ivyvsc~p~Tl  339 (374)
T TIGR02085       287 ALDSAKFATAQMSAPELVLVNPPRRGIGKELCDYLSQMAPKFILYSSCNAQTM  339 (374)
T ss_pred             ECCHHHHHHhcCCCCCEEEECCCCCCCcHHHHHHHHhcCCCeEEEEEeCHHHH
Confidence            999864322 12469999999987654322   23457999999999876543

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.93  E-value=5.1e-09  Score=97.88  Aligned_cols=115  Identities=18%  Similarity=0.296  Sum_probs=83.9

Q ss_pred             hcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cc-cccccccccccc----------
Q psy7829         368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TN-HIDLIANETIEI----------  433 (511)
Q Consensus       368 ~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~-~v~~i~~d~~~~----------  433 (511)
                      ++.+++|.+|||||||.|.+++.+|+.++  .+|+|+++|+++.+.+.+++.   .. +++++..|..+.          
T Consensus        67 kl~L~~G~~lLDiGCGWG~l~~~aA~~y~--v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrIvSv  144 (283)
T COG2230          67 KLGLKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRIVSV  144 (283)
T ss_pred             hcCCCCCCEEEEeCCChhHHHHHHHHHcC--CEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccceeeeh
Confidence            48999999999999999999999999986  899999999988887766544   33 566654432111          


Q ss_pred             ----------ccccchhhhhcccCCcEEEEE--cCC--cc-HHHHHHHHHhCCCcEEEEhHHHHHH
Q psy7829         434 ----------IPHILDLCYLNLHRGAKVLEI--GSG--SG-YLATLMAHLVGPTGHVTGLEHMMDI  484 (511)
Q Consensus       434 ----------l~~~~d~i~~~l~~~~~vLD~--~~g--~g-~~~~~l~~~l~~~g~v~~~~~ml~~  484 (511)
                                .+..|..+...++++++++=.  +..  .. .....+.+++.|||.+..++.+.+.
T Consensus       145 gmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~  210 (283)
T COG2230         145 GMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILEL  210 (283)
T ss_pred             hhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHH
Confidence                      234566677788898877722  221  11 4566778888999999877555554

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=98.93  E-value=7.5e-09  Score=86.72  Aligned_cols=109  Identities=22%  Similarity=0.258  Sum_probs=72.7

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---cccccccccccccccc
Q psy7829         358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETIEII  434 (511)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~~~l  434 (511)
                      .....++..  +.+.++.+|||+|||+|..+..+++.. |..+|+++|+++.+++.+++++   +..+++++.++....+
T Consensus         6 ~~~~~~~~~--~~~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   82 (124)
T TIGR02469         6 EVRALTLSK--LRLRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEAL   82 (124)
T ss_pred             HHHHHHHHH--cCCCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccC
Confidence            344445555  677788999999999999999999887 4589999999988888766554   3456777766643222


Q ss_pred             ---cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829         435 ---PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       435 ---~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~  477 (511)
                         ...+|.++......        -.-.+...+.+.++|+|.++.
T Consensus        83 ~~~~~~~D~v~~~~~~~--------~~~~~l~~~~~~Lk~gG~li~  120 (124)
T TIGR02469        83 EDSLPEPDRVFIGGSGG--------LLQEILEAIWRRLRPGGRIVL  120 (124)
T ss_pred             hhhcCCCCEEEECCcch--------hHHHHHHHHHHHcCCCCEEEE
Confidence               12334333211000        012356677888999998864

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR00417 speE spermidine synthase

Probab=98.92  E-value=6e-09  Score=99.66  Aligned_cols=103  Identities=21%  Similarity=0.175  Sum_probs=78.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCccEE
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYDVI  211 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I  211 (511)
                      .+.+||+||||+|..+..+++.. +..+++++|+++.+++.+++++...+. .+..++++++.+|+..... ..++||+|
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~-~~~~~~v~i~~~D~~~~l~~~~~~yDvI  149 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAG-SYDDPRVDLQIDDGFKFLADTENTFDVI  149 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcc-cccCCceEEEECchHHHHHhCCCCccEE
Confidence            45699999999999998888764 456899999999999999998765321 1234678999988764221 13689999


Q ss_pred             EecCCCC----------chHHHHHhhcccCcEEEEE
Q psy7829         212 YYGGCVS----------EVPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       212 ~~~~~~~----------~~~~~~~~~LkpgG~l~~~  237 (511)
                      +++...+          .+.+.+.+.|+|||.+++.
T Consensus       150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            9976522          2346889999999999985

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.92  E-value=5.1e-09  Score=107.37  Aligned_cols=102  Identities=20%  Similarity=0.210  Sum_probs=80.4

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC----CCCC
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY----LPEA  206 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~  206 (511)
                      +.++.+|||+|||+|.+++.+++..   .+|+++|+++.+++.|++|+..++     .+|++|+.+|+.+..    ....
T Consensus       290 ~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~-----~~nv~~~~~d~~~~l~~~~~~~~  361 (431)
T TIGR00479       290 LQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNG-----IANVEFLAGTLETVLPKQPWAGQ  361 (431)
T ss_pred             cCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhC-----CCceEEEeCCHHHHHHHHHhcCC
Confidence            4567899999999999999999874   369999999999999999998864     568999999986422    1235


Q ss_pred             CccEEEecCCCCch----HHHHHhhcccCcEEEEEEccC
Q psy7829         207 PYDVIYYGGCVSEV----PSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       207 ~fD~I~~~~~~~~~----~~~~~~~LkpgG~l~~~~~~~  241 (511)
                      +||+|+++++...+    .+.+ ..++|++.+++++.+.
T Consensus       362 ~~D~vi~dPPr~G~~~~~l~~l-~~l~~~~ivyvsc~p~  399 (431)
T TIGR00479       362 IPDVLLLDPPRKGCAAEVLRTI-IELKPERIVYVSCNPA  399 (431)
T ss_pred             CCCEEEECcCCCCCCHHHHHHH-HhcCCCEEEEEcCCHH
Confidence            79999999886442    2333 3588999888877644

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.92  E-value=5.7e-09  Score=94.24  Aligned_cols=100  Identities=26%  Similarity=0.316  Sum_probs=79.5

Q ss_pred             CCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC---CCCCCCccE
Q psy7829         134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG---YLPEAPYDV  210 (511)
Q Consensus       134 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~fD~  210 (511)
                      ...+||||||.|.+...+|... |+..++|+|++...+..+.+++...     ..+|+.++++|+...   ..+++++|.
T Consensus        18 ~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~-----~l~Nv~~~~~da~~~l~~~~~~~~v~~   91 (195)
T PF02390_consen   18 NPLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKR-----GLKNVRFLRGDARELLRRLFPPGSVDR   91 (195)
T ss_dssp             CEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHH-----TTSSEEEEES-CTTHHHHHSTTTSEEE
T ss_pred             CCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhh-----cccceEEEEccHHHHHhhcccCCchhe
Confidence            3489999999999999999997 8999999999999999999998885     478999999998752   234589999


Q ss_pred             EEecCCCCch--------------HHHHHhhcccCcEEEEEEc
Q psy7829         211 IYYGGCVSEV--------------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       211 I~~~~~~~~~--------------~~~~~~~LkpgG~l~~~~~  239 (511)
                      |+++.+-++.              +..+.+.|+|||.|.+..+
T Consensus        92 i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD  134 (195)
T PF02390_consen   92 IYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD  134 (195)
T ss_dssp             EEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred             EEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence            9998876433              3678999999999988654

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.91  E-value=1.8e-08  Score=92.26  Aligned_cols=118  Identities=19%  Similarity=0.203  Sum_probs=84.2

Q ss_pred             chhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhc------cCC-CcCC
Q psy7829         115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISK------GNK-DLLD  187 (511)
Q Consensus       115 ~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~------~~~-~~~~  187 (511)
                      +.|.+...... +.  ..++.+||+.|||.|.-+..||.+..   +|+|+|+|+.+++.+.+....      .+. ....
T Consensus        28 pnp~L~~~~~~-l~--~~~~~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~  101 (226)
T PRK13256         28 PNEFLVKHFSK-LN--INDSSVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK  101 (226)
T ss_pred             CCHHHHHHHHh-cC--CCCCCeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceec
Confidence            45555554433 32  44678999999999999999999753   499999999999998663210      000 0012


Q ss_pred             CCCeEEEEccCCCCCC---CCCCccEEEecCCCCchH--------HHHHhhcccCcEEEEEE
Q psy7829         188 SGRVRIVEADAREGYL---PEAPYDVIYYGGCVSEVP--------SRVLNQLKKGGRILAPI  238 (511)
Q Consensus       188 ~~~v~~~~~d~~~~~~---~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~l~~~~  238 (511)
                      ..++++.++|+.+...   ..+.||+|+-...+..++        +.+.++|+|||.+++..
T Consensus       102 ~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~  163 (226)
T PRK13256        102 GDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV  163 (226)
T ss_pred             cCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence            3479999999987432   136899999877776654        57889999999998854

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.90  E-value=1e-08  Score=98.39  Aligned_cols=105  Identities=19%  Similarity=0.284  Sum_probs=84.3

Q ss_pred             cchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEE
Q psy7829         114 MNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI  193 (511)
Q Consensus       114 ~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~  193 (511)
                      +..+.+...+++.+.  +.++.+|||||||+|.++..+++..   .+|+++|+++.+++.+++++...+    ..+++++
T Consensus        19 L~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~----~~~~v~i   89 (294)
T PTZ00338         19 LKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSP----LASKLEV   89 (294)
T ss_pred             cCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcC----CCCcEEE
Confidence            356778888888776  7789999999999999999999874   369999999999999999987643    2468999


Q ss_pred             EEccCCCCCCCCCCccEEEecCCCCchHHHHHhhcc
Q psy7829         194 VEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLK  229 (511)
Q Consensus       194 ~~~d~~~~~~~~~~fD~I~~~~~~~~~~~~~~~~Lk  229 (511)
                      +++|+.+...  ..||.|+++.++..-...+.++|.
T Consensus        90 i~~Dal~~~~--~~~d~VvaNlPY~Istpil~~ll~  123 (294)
T PTZ00338         90 IEGDALKTEF--PYFDVCVANVPYQISSPLVFKLLA  123 (294)
T ss_pred             EECCHhhhcc--cccCEEEecCCcccCcHHHHHHHh
Confidence            9999976432  468999999888654455555553

>PLN02476 O-methyltransferase

Probab=98.90  E-value=2.3e-09  Score=100.96  Aligned_cols=111  Identities=14%  Similarity=0.212  Sum_probs=77.5

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c-ccccccccccccc
Q psy7829         358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T-NHIDLIANETIEI  433 (511)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~-~~v~~i~~d~~~~  433 (511)
                      .....++.+ .+...++.+|||||||+||.++++|+.++++++|+++|.+++.++.+++++.   . ++++++.+++.+.
T Consensus       104 ~~~g~lL~~-L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~  182 (278)
T PLN02476        104 PDQAQLLAM-LVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAES  182 (278)
T ss_pred             HHHHHHHHH-HHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence            344454544 3566789999999999999999999988778999999999988888777764   3 3688889988776


Q ss_pred             ccc--------cchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829         434 IPH--------ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       434 l~~--------~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~  477 (511)
                      ++.        .||.++.+..++.        .-.....+.+.++|||.|+.
T Consensus       183 L~~l~~~~~~~~FD~VFIDa~K~~--------Y~~y~e~~l~lL~~GGvIV~  226 (278)
T PLN02476        183 LKSMIQNGEGSSYDFAFVDADKRM--------YQDYFELLLQLVRVGGVIVM  226 (278)
T ss_pred             HHHHHhcccCCCCCEEEECCCHHH--------HHHHHHHHHHhcCCCcEEEE
Confidence            653        2444443332211        11223455677888877653

>PTZ00146 fibrillarin; Provisional

Probab=98.89  E-value=1.7e-08  Score=95.12  Aligned_cols=138  Identities=17%  Similarity=0.242  Sum_probs=84.4

Q ss_pred             CHHHHHHHHH-HhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc-ccccccccccccccc
Q psy7829         356 SERSIAHILD-LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI-STNHIDLIANETIEI  433 (511)
Q Consensus       356 ~~~~~~~~~~-~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~-~~~~v~~i~~d~~~~  433 (511)
                      ..+..+.++. +..+.++++.+|||+|||+|+++..+|..+++.++|+++|+++.+.+...+.. ...|+.++.+|....
T Consensus       114 rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p  193 (293)
T PTZ00146        114 RSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYP  193 (293)
T ss_pred             ccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccCh
Confidence            3455544433 22367889999999999999999999999988899999999976443222211 126777777775321


Q ss_pred             -----ccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh------------HHHHHHHHHHHHhcCCCc
Q psy7829         434 -----IPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL------------EHMMDIAIESIANISTNH  496 (511)
Q Consensus       434 -----l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~------------~~ml~~a~~~~~~~~~~~  496 (511)
                           +...+|.++.+...    .|   -.-.+...+.+.|+|+|+++..            +..++.-.+.+++.++..
T Consensus       194 ~~y~~~~~~vDvV~~Dva~----pd---q~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~  266 (293)
T PTZ00146        194 QKYRMLVPMVDVIFADVAQ----PD---QARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKP  266 (293)
T ss_pred             hhhhcccCCCCEEEEeCCC----cc---hHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCce
Confidence                 12234555443321    10   0112234566789999998873            233332235666666644


Q ss_pred             eEEE
Q psy7829         497 IDLI  500 (511)
Q Consensus       497 i~~i  500 (511)
                      ++.+
T Consensus       267 ~e~v  270 (293)
T PTZ00146        267 KEQL  270 (293)
T ss_pred             EEEE
Confidence            4443

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.88  E-value=3.9e-10  Score=107.98  Aligned_cols=176  Identities=20%  Similarity=0.254  Sum_probs=116.5

Q ss_pred             CCCCCCCCcccCCCccHHHHHHHHHHcCCCCCH--HHHHHHHh--CCCCCccCCCCCCCcccccCCCcccchhHHHHHHH
Q psy7829          49 IPPPDNLNHFKNEGTCQTDLVNHLRDIGKIRTE--RVAQAFYK--VDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAA  124 (511)
Q Consensus        49 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~a~~~--~~r~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~  124 (511)
                      ..++...++.|+...+...+.+.|...|+...+  ....++..  ...........|.++.+.++       -.-.....
T Consensus         6 n~~~~~~iRvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~G~~~vQ-------d~sS~l~~   78 (283)
T PF01189_consen    6 NCPPPVTIRVNTLKISREELLEELEEEGIQLEPIPRSPDALRVIGKSPYSICSLPEFKNGLFYVQ-------DESSQLVA   78 (283)
T ss_dssp             TS--GEEEEE-TTTSSHHHHHHHHHHTTHEEEEETSTTCEEEEEEECSSCGGGSHHHHTTSEEEH-------HHHHHHHH
T ss_pred             CCCCCeEEEECcCcCCHHHHHHHHhhcccceEEcccccchhccccccccchhhchhhhCCcEEec-------cccccccc
Confidence            445667889999999999999999998852110  00000000  00000111112333332222       11111122


Q ss_pred             HHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC--
Q psy7829         125 ENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY--  202 (511)
Q Consensus       125 ~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--  202 (511)
                      ..|.  ..++.+|||+++++|.-+.+++..+...+.+++.|+++..+...++++++.     +..++.....|.....  
T Consensus        79 ~~L~--~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~-----g~~~v~~~~~D~~~~~~~  151 (283)
T PF01189_consen   79 LALD--PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL-----GVFNVIVINADARKLDPK  151 (283)
T ss_dssp             HHHT--TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT-----T-SSEEEEESHHHHHHHH
T ss_pred             cccc--ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc-----CCceEEEEeecccccccc
Confidence            3343  678999999999999999999999977899999999999999999999996     4678888888876431  


Q ss_pred             CCCCCccEEEecCCCC----------------------------chHHHHHhhc----ccCcEEEEEE
Q psy7829         203 LPEAPYDVIYYGGCVS----------------------------EVPSRVLNQL----KKGGRILAPI  238 (511)
Q Consensus       203 ~~~~~fD~I~~~~~~~----------------------------~~~~~~~~~L----kpgG~l~~~~  238 (511)
                      .....||.|+++.++.                            .+++.+.+.+    ||||+++.++
T Consensus       152 ~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT  219 (283)
T PF01189_consen  152 KPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST  219 (283)
T ss_dssp             HHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred             ccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence            1224699999999982                            2236778899    9999999874

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.88  E-value=1.3e-08  Score=93.01  Aligned_cols=121  Identities=21%  Similarity=0.236  Sum_probs=83.7

Q ss_pred             CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccccccc-----cccchhhhhc
Q psy7829         373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEII-----PHILDLCYLN  444 (511)
Q Consensus       373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~l-----~~~~d~i~~~  444 (511)
                      ++.+|||+|||+|..+..+++.. |+.+|+++|+++++++.+.++..   ..+++++++|..+.+     +..+|.++.+
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~  118 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN  118 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence            68899999999999999999876 66899999999999988776653   467888888762222     2335555443


Q ss_pred             ccCCcEEE--EEcC-CccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCC
Q psy7829         445 LHRGAKVL--EIGS-GSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIST  494 (511)
Q Consensus       445 l~~~~~vL--D~~~-g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~  494 (511)
                      ....+...  +... -...+...+++.++|+|.++..   ..+.+...+.+.+.|+
T Consensus       119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~  174 (202)
T PRK00121        119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGG  174 (202)
T ss_pred             CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcc
Confidence            32111000  0000 0234567788899999999876   6677777777777776

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.88  E-value=1.1e-08  Score=96.03  Aligned_cols=110  Identities=21%  Similarity=0.372  Sum_probs=76.1

Q ss_pred             HHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccccccc--cc
Q psy7829         362 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEII--PH  436 (511)
Q Consensus       362 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~l--~~  436 (511)
                      .++..  +.++++.+|||+|||+|..+..+++..++.++|+++|+++++++.+.++..   ..+++++.+|.....  +.
T Consensus        36 ~~l~~--l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  113 (231)
T TIGR02752        36 DTMKR--MNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDN  113 (231)
T ss_pred             HHHHh--cCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCC
Confidence            44554  677889999999999999999999988777899999999999887776653   456778877754421  23


Q ss_pred             cchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         437 ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       437 ~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .+|.+.....     +...-..-.+...+.+.|+|+|.++.+
T Consensus       114 ~fD~V~~~~~-----l~~~~~~~~~l~~~~~~Lk~gG~l~~~  150 (231)
T TIGR02752       114 SFDYVTIGFG-----LRNVPDYMQVLREMYRVVKPGGKVVCL  150 (231)
T ss_pred             CccEEEEecc-----cccCCCHHHHHHHHHHHcCcCeEEEEE
Confidence            4554443211     101111223445677888999998764

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.87  E-value=7.3e-09  Score=98.52  Aligned_cols=107  Identities=15%  Similarity=0.205  Sum_probs=75.0

Q ss_pred             HHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccc-cccc
Q psy7829         360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEII-PHIL  438 (511)
Q Consensus       360 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l-~~~~  438 (511)
                      +..++..  +...++.+|||+|||+|.++..+++.. |+.+|+|+|+++.+++.++++    +++++.+|..+.. ...+
T Consensus        18 ~~~ll~~--l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~----~~~~~~~d~~~~~~~~~f   90 (255)
T PRK14103         18 FYDLLAR--VGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER----GVDARTGDVRDWKPKPDT   90 (255)
T ss_pred             HHHHHHh--CCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc----CCcEEEcChhhCCCCCCc
Confidence            4455665  677889999999999999999999887 668999999999999988664    4777777754432 2345


Q ss_pred             hhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         439 DLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       439 d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      |.++.+..     +............+++.|+|||.++..
T Consensus        91 D~v~~~~~-----l~~~~d~~~~l~~~~~~LkpgG~l~~~  125 (255)
T PRK14103         91 DVVVSNAA-----LQWVPEHADLLVRWVDELAPGSWIAVQ  125 (255)
T ss_pred             eEEEEehh-----hhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence            55544321     111112344556777888888887653

>KOG2361|consensus

Probab=98.87  E-value=3.1e-09  Score=94.98  Aligned_cols=145  Identities=19%  Similarity=0.161  Sum_probs=98.7

Q ss_pred             EEEEEcCCccHHHHHHHHHhCCC--ceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC----CCCCCCcc
Q psy7829         136 KVLDLGSGSGYQTCVFAHMVGPT--GKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG----YLPEAPYD  209 (511)
Q Consensus       136 ~vLDiG~G~G~~~~~la~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD  209 (511)
                      +|||||||.|.....+.+-. ++  ..|+++|.|+.+++..+++..-      ...++...+.|+...    ....+++|
T Consensus        74 ~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~vk~~~~~------~e~~~~afv~Dlt~~~~~~~~~~~svD  146 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELVKKSSGY------DESRVEAFVWDLTSPSLKEPPEEGSVD  146 (264)
T ss_pred             hheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHHHhcccc------chhhhcccceeccchhccCCCCcCccc
Confidence            79999999999999888865 55  8899999999999999988654      345677777777632    23458899


Q ss_pred             EEEecCCCCch--------HHHHHhhcccCcEEEEEEccCCCcceEEEE-EE-ecCCeEEEEeecceEEEeccccccccc
Q psy7829         210 VIYYGGCVSEV--------PSRVLNQLKKGGRILAPIGPMDDFQKLTQI-DR-FHDNTLQKTDLFEVAYDAIMRKALQMD  279 (511)
Q Consensus       210 ~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~  279 (511)
                      .|.+..++..+        .+++.++|||||.|++--........+.-- .+ ..+..+.+.+...+.|.++....+.+.
T Consensus       147 ~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~  226 (264)
T KOG2361|consen  147 IITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFT  226 (264)
T ss_pred             eEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHH
Confidence            98776655433        378999999999999965543332221111 01 111223333445557777777766666


Q ss_pred             ccccccCc
Q psy7829         280 IHKFQMDP  287 (511)
Q Consensus       280 ~~~~~~~~  287 (511)
                      .+||....
T Consensus       227 ~agf~~~~  234 (264)
T KOG2361|consen  227 KAGFEEVQ  234 (264)
T ss_pred             hcccchhc
Confidence            66666543

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.87  E-value=1.2e-09  Score=98.97  Aligned_cols=111  Identities=23%  Similarity=0.405  Sum_probs=77.1

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----cccccccccccccc
Q psy7829         358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETIEI  433 (511)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~~~  433 (511)
                      .....++.. ........+||||||++||.++++|+.++++++|+++|++++.++.+++++.    .++|+++.+++.+.
T Consensus        31 ~~~g~lL~~-l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~  109 (205)
T PF01596_consen   31 PETGQLLQM-LVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEV  109 (205)
T ss_dssp             HHHHHHHHH-HHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHH
T ss_pred             HHHHHHHHH-HHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhh
Confidence            444455554 3455688899999999999999999988778999999999988888877665    25688999998887


Q ss_pred             ccc--------cchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829         434 IPH--------ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       434 l~~--------~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~  477 (511)
                      ++.        .||.+|.+-.++...        .....+.+.++|||-|+.
T Consensus       110 l~~l~~~~~~~~fD~VFiDa~K~~y~--------~y~~~~~~ll~~ggvii~  153 (205)
T PF01596_consen  110 LPELANDGEEGQFDFVFIDADKRNYL--------EYFEKALPLLRPGGVIIA  153 (205)
T ss_dssp             HHHHHHTTTTTSEEEEEEESTGGGHH--------HHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHhccCCCceeEEEEcccccchh--------hHHHHHhhhccCCeEEEE
Confidence            664        355555444333221        122344577888666653

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.86  E-value=6.4e-09  Score=96.99  Aligned_cols=110  Identities=15%  Similarity=0.251  Sum_probs=77.1

Q ss_pred             HHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----cccccccccccccc
Q psy7829         359 SIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETIEII  434 (511)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~~l  434 (511)
                      ...+++.+ .+...++.+|||+|||+|+.++++++..+++++|+++|+++++++.+++|+..    ++++++.+|+.+.+
T Consensus        55 ~~g~~L~~-l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L  133 (234)
T PLN02781         55 DEGLFLSM-LVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSAL  133 (234)
T ss_pred             HHHHHHHH-HHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH
Confidence            34455544 35667899999999999999999999887789999999999888887777653    35788888887765


Q ss_pred             cc--------cchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829         435 PH--------ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       435 ~~--------~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~  477 (511)
                      +.        .||.++.+..+.        ....+...+.+.++|||.|+.
T Consensus       134 ~~l~~~~~~~~fD~VfiDa~k~--------~y~~~~~~~~~ll~~GG~ii~  176 (234)
T PLN02781        134 DQLLNNDPKPEFDFAFVDADKP--------NYVHFHEQLLKLVKVGGIIAF  176 (234)
T ss_pred             HHHHhCCCCCCCCEEEECCCHH--------HHHHHHHHHHHhcCCCeEEEE
Confidence            42        244443332211        111234556778899887764

>PRK03612 spermidine synthase; Provisional

Probab=98.86  E-value=1.6e-08  Score=105.52  Aligned_cols=106  Identities=22%  Similarity=0.196  Sum_probs=79.9

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH--HhccCCCcCCCCCeEEEEccCCCCCC-CCCCc
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN--ISKGNKDLLDSGRVRIVEADAREGYL-PEAPY  208 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~--~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~f  208 (511)
                      +++.+|||+|||+|..+..+++. ++..+|+++|+++++++.++++  +...+.+.+..++++++.+|+.+... ..++|
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f  374 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF  374 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence            45789999999999999998875 2337899999999999999984  32211111234689999999875322 23689


Q ss_pred             cEEEecCCCCc-----------hHHHHHhhcccCcEEEEEE
Q psy7829         209 DVIYYGGCVSE-----------VPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       209 D~I~~~~~~~~-----------~~~~~~~~LkpgG~l~~~~  238 (511)
                      |+|+++.+.+.           +.+.+++.|||||.+++..
T Consensus       375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence            99999865432           3468899999999999854

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.86  E-value=6.2e-09  Score=94.14  Aligned_cols=111  Identities=22%  Similarity=0.360  Sum_probs=78.8

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc----cccccc-ccccc
Q psy7829         358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN----HIDLIA-NETIE  432 (511)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~----~v~~i~-~d~~~  432 (511)
                      +++..++.+ .+....+.+|||||++.||.++++|..+..+++++++|+++++++.|++|+...    .++++. +|+.+
T Consensus        45 ~e~g~~L~~-L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~  123 (219)
T COG4122          45 PETGALLRL-LARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALD  123 (219)
T ss_pred             hhHHHHHHH-HHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHH
Confidence            344455554 366778999999999999999999999955899999999999999998887732    266666 47666


Q ss_pred             ccc----ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829         433 IIP----HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       433 ~l~----~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~  477 (511)
                      .+.    ..||.+|.+-.++.+        -.+.....+.++|||-|+.
T Consensus       124 ~l~~~~~~~fDliFIDadK~~y--------p~~le~~~~lLr~GGliv~  164 (219)
T COG4122         124 VLSRLLDGSFDLVFIDADKADY--------PEYLERALPLLRPGGLIVA  164 (219)
T ss_pred             HHHhccCCCccEEEEeCChhhC--------HHHHHHHHHHhCCCcEEEE
Confidence            554    445655554433322        2234556677899777664

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.85  E-value=1.8e-08  Score=95.31  Aligned_cols=123  Identities=22%  Similarity=0.210  Sum_probs=79.7

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccc----ccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHID----LIANETI  431 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~----~i~~d~~  431 (511)
                      ....+..++......+.++.+|||+|||+|.+++.+++.. + .+|+++|+++.+++.+++|...+++.    +..++. 
T Consensus       102 ~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g-~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-  178 (250)
T PRK00517        102 THPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLG-A-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-  178 (250)
T ss_pred             CCHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcC-C-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-
Confidence            3444444454422335689999999999999999877653 3 47999999999999988887765542    111111 


Q ss_pred             ccccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCC
Q psy7829         432 EIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIST  494 (511)
Q Consensus       432 ~~l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~  494 (511)
                           .+|.++.++....        .-.+...+.+.++|+|.++..   ....+...+.+.+.|+
T Consensus       179 -----~fD~Vvani~~~~--------~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf  231 (250)
T PRK00517        179 -----KADVIVANILANP--------LLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGF  231 (250)
T ss_pred             -----CcCEEEEcCcHHH--------HHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCC
Confidence                 3455444321110        112345677889999998865   4445556666777776

>KOG3191|consensus

Probab=98.85  E-value=3.5e-08  Score=84.23  Aligned_cols=102  Identities=21%  Similarity=0.309  Sum_probs=83.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY  212 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~  212 (511)
                      ...-++|||||||..+..+++..+++....++|+++.+++...+.+..++      .+++.++.|+...... ++.|+++
T Consensus        43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~------~~~~~V~tdl~~~l~~-~~VDvLv  115 (209)
T KOG3191|consen   43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR------VHIDVVRTDLLSGLRN-ESVDVLV  115 (209)
T ss_pred             CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC------CccceeehhHHhhhcc-CCccEEE
Confidence            36679999999999999999999999999999999999999999988764      3588999999877665 8899999


Q ss_pred             ecCCCC---------------------------chHHHHHhhcccCcEEEEEEccC
Q psy7829         213 YGGCVS---------------------------EVPSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       213 ~~~~~~---------------------------~~~~~~~~~LkpgG~l~~~~~~~  241 (511)
                      .++++-                           .++..+-..|.|.|.+++..-..
T Consensus       116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~  171 (209)
T KOG3191|consen  116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA  171 (209)
T ss_pred             ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh
Confidence            998761                           11234557789999999865433

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.85  E-value=1.1e-07  Score=85.59  Aligned_cols=113  Identities=15%  Similarity=0.011  Sum_probs=82.1

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCC
Q psy7829         120 IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAR  199 (511)
Q Consensus       120 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  199 (511)
                      ...+...+.. .-.+.+|||++||+|.+++.++.+. . .+|+++|.++.+++.+++|++.++    ..++++++++|+.
T Consensus        37 rea~f~~l~~-~~~g~~vLDLfaGsG~lglea~srg-a-~~v~~vE~~~~a~~~~~~N~~~~~----~~~~~~~~~~D~~  109 (189)
T TIGR00095        37 RELFFNILRP-EIQGAHLLDVFAGSGLLGEEALSRG-A-KVAFLEEDDRKANQTLKENLALLK----SGEQAEVVRNSAL  109 (189)
T ss_pred             HHHHHHHHHH-hcCCCEEEEecCCCcHHHHHHHhCC-C-CEEEEEeCCHHHHHHHHHHHHHhC----CcccEEEEehhHH
Confidence            3334444432 2368899999999999999999885 3 479999999999999999999865    2347899999985


Q ss_pred             CCC---CCC-CCccEEEecCCCCc-h----HHHHH--hhcccCcEEEEEEc
Q psy7829         200 EGY---LPE-APYDVIYYGGCVSE-V----PSRVL--NQLKKGGRILAPIG  239 (511)
Q Consensus       200 ~~~---~~~-~~fD~I~~~~~~~~-~----~~~~~--~~LkpgG~l~~~~~  239 (511)
                      ...   ... ..||+|+.++++.. .    ...+.  .+|+++|.+++...
T Consensus       110 ~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~  160 (189)
T TIGR00095       110 RALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEED  160 (189)
T ss_pred             HHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence            421   111 24899999998843 1    22222  36889998888654

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.84  E-value=1.5e-08  Score=100.96  Aligned_cols=117  Identities=15%  Similarity=0.085  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHhhcCC-CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829         118 NQIADAAENLKLHLV-DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA  196 (511)
Q Consensus       118 ~~~~~~~~~l~~~~~-~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  196 (511)
                      .....+++.+...+. .+.+|||++||+|.+++.+++..   .+|+++|+++.+++.|++|+..++     .+|++|+.+
T Consensus       190 ~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~-----~~~v~~~~~  261 (362)
T PRK05031        190 AVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANG-----IDNVQIIRM  261 (362)
T ss_pred             HHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhC-----CCcEEEEEC
Confidence            344444444433232 23579999999999999999875   269999999999999999998864     458999999


Q ss_pred             cCCCCCC---C-------------CCCccEEEecCCCCchHHHH-HhhcccCcEEEEEEccCC
Q psy7829         197 DAREGYL---P-------------EAPYDVIYYGGCVSEVPSRV-LNQLKKGGRILAPIGPMD  242 (511)
Q Consensus       197 d~~~~~~---~-------------~~~fD~I~~~~~~~~~~~~~-~~~LkpgG~l~~~~~~~~  242 (511)
                      |+.+...   .             ...||+|+.++|...+...+ ....+|++.+++++.+..
T Consensus       262 d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~~~~ivyvSC~p~t  324 (362)
T PRK05031        262 SAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQAYERILYISCNPET  324 (362)
T ss_pred             CHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHccCCEEEEEeCHHH
Confidence            9864211   0             12589999999976655444 444468999999988744

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.84  E-value=2.1e-08  Score=95.34  Aligned_cols=120  Identities=23%  Similarity=0.332  Sum_probs=72.3

Q ss_pred             HHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----cccccccccccc---
Q psy7829         360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETIE---  432 (511)
Q Consensus       360 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~---  432 (511)
                      ...+++.  +.+++|++|||||||.|.+++.+|+..|  .+|+||.+++++.+.+++++..    +.+++...|..+   
T Consensus        51 ~~~~~~~--~~l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~  126 (273)
T PF02353_consen   51 LDLLCEK--LGLKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG  126 (273)
T ss_dssp             HHHHHTT--TT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---
T ss_pred             HHHHHHH--hCCCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC
Confidence            3344554  7899999999999999999999999986  8999999999888877655542    234554443211   


Q ss_pred             ------------c-----ccccchhhhhcccCCcEEE--EEcCCccHH-H------HHHHHHhCCCcEEEEhHHHHH
Q psy7829         433 ------------I-----IPHILDLCYLNLHRGAKVL--EIGSGSGYL-A------TLMAHLVGPTGHVTGLEHMMD  483 (511)
Q Consensus       433 ------------~-----l~~~~d~i~~~l~~~~~vL--D~~~g~g~~-~------~~l~~~l~~~g~v~~~~~ml~  483 (511)
                                  .     .+..+..+...++|+++++  .+++..... .      ..+.+.+-|+|.+.....++.
T Consensus       127 ~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~  203 (273)
T PF02353_consen  127 KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILR  203 (273)
T ss_dssp             S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHH
T ss_pred             CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHH
Confidence                        1     1234666667778888765  333322221 1      346677788888877766665

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.84  E-value=1.5e-08  Score=96.49  Aligned_cols=92  Identities=20%  Similarity=0.282  Sum_probs=74.2

Q ss_pred             hHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829         117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA  196 (511)
Q Consensus       117 p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  196 (511)
                      |-+...+++.+.  +.++..++|.+||.|+.+..+++.+++.++|+|+|.++.+++.|++++..       .++++++++
T Consensus         5 pVll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-------~~ri~~i~~   75 (296)
T PRK00050          5 PVLLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-------FGRFTLVHG   75 (296)
T ss_pred             cccHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-------CCcEEEEeC
Confidence            457778888886  67889999999999999999999986689999999999999999988754       247999999


Q ss_pred             cCCCCC---CC-CCCccEEEecCCC
Q psy7829         197 DAREGY---LP-EAPYDVIYYGGCV  217 (511)
Q Consensus       197 d~~~~~---~~-~~~fD~I~~~~~~  217 (511)
                      |+.+..   .. ..++|.|+++..+
T Consensus        76 ~f~~l~~~l~~~~~~vDgIl~DLGv  100 (296)
T PRK00050         76 NFSNLKEVLAEGLGKVDGILLDLGV  100 (296)
T ss_pred             CHHHHHHHHHcCCCccCEEEECCCc
Confidence            987421   11 1279999887544

>KOG3420|consensus

Probab=98.84  E-value=7.8e-09  Score=84.49  Aligned_cols=99  Identities=20%  Similarity=0.252  Sum_probs=80.4

Q ss_pred             CcccchhHHHHHHHHHHhhcCC--CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCC
Q psy7829         111 AGVMNAPNQIADAAENLKLHLV--DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS  188 (511)
Q Consensus       111 ~~~~~~p~~~~~~~~~l~~~~~--~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~  188 (511)
                      .+..++|++.+.|+..+.+-..  .|.+++|+|||+|-++...+-.  ....|.|+|+++++++.+++|++...      
T Consensus        24 EQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeEfE------   95 (185)
T KOG3420|consen   24 EQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEEFE------   95 (185)
T ss_pred             hhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHHhh------
Confidence            4566788899999888865332  6889999999999999655543  35679999999999999999998853      


Q ss_pred             CCeEEEEccCCCCCCCCCCccEEEecCCC
Q psy7829         189 GRVRIVEADAREGYLPEAPYDVIYYGGCV  217 (511)
Q Consensus       189 ~~v~~~~~d~~~~~~~~~~fD~I~~~~~~  217 (511)
                      -+++++++|..+.-+..+.||.++.++++
T Consensus        96 vqidlLqcdildle~~~g~fDtaviNppF  124 (185)
T KOG3420|consen   96 VQIDLLQCDILDLELKGGIFDTAVINPPF  124 (185)
T ss_pred             hhhheeeeeccchhccCCeEeeEEecCCC
Confidence            35789999988765556889999999988

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.84  E-value=1.5e-08  Score=96.65  Aligned_cols=110  Identities=19%  Similarity=0.313  Sum_probs=78.1

Q ss_pred             HHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccc-ccc
Q psy7829         359 SIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEII-PHI  437 (511)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l-~~~  437 (511)
                      ....++..  +.+.++.+|||||||+|.++..+++.. +.++|+++|+++.+++.++++.  ++++++.+|..... +..
T Consensus        19 ~~~~ll~~--~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~--~~~~~~~~d~~~~~~~~~   93 (258)
T PRK01683         19 PARDLLAR--VPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL--PDCQFVEADIASWQPPQA   93 (258)
T ss_pred             HHHHHHhh--CCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC--CCCeEEECchhccCCCCC
Confidence            45555665  677889999999999999999999887 6689999999999999988875  45777766654332 234


Q ss_pred             chhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         438 LDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       438 ~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +|.++.+..     +........+...+.+.|+|+|.++..
T Consensus        94 fD~v~~~~~-----l~~~~d~~~~l~~~~~~LkpgG~~~~~  129 (258)
T PRK01683         94 LDLIFANAS-----LQWLPDHLELFPRLVSLLAPGGVLAVQ  129 (258)
T ss_pred             ccEEEEccC-----hhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            555544321     111123445667778888999987663

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.84  E-value=2.2e-08  Score=102.46  Aligned_cols=121  Identities=17%  Similarity=0.198  Sum_probs=82.4

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhh---ccccccccccccccccccccchhhhhcc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIAN---ISTNHIDLIANETIEIIPHILDLCYLNL  445 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~---~~~~~v~~i~~d~~~~l~~~~d~i~~~l  445 (511)
                      +.+.+|++|||+|||+|..|+.+++.++++++|+++|++.++++.+++|   .+..+++++++|.........   ...-
T Consensus       248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~---~~~~  324 (434)
T PRK14901        248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKP---QWRG  324 (434)
T ss_pred             hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccc---cccc
Confidence            6778999999999999999999999887678999999998877766555   456678888887654321100   0011


Q ss_pred             cCCcEEEEEcC-CccHH-------------------------HHHHHHHhCCCcEEEEh------HHHHHHHHHHHHhc
Q psy7829         446 HRGAKVLEIGS-GSGYL-------------------------ATLMAHLVGPTGHVTGL------EHMMDIAIESIANI  492 (511)
Q Consensus       446 ~~~~~vLD~~~-g~g~~-------------------------~~~l~~~l~~~g~v~~~------~~ml~~a~~~~~~~  492 (511)
                      ..+..++|..| |+|.+                         ....++.++|||+++-.      ++-.+....-+++.
T Consensus       325 ~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~  403 (434)
T PRK14901        325 YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARH  403 (434)
T ss_pred             cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhC
Confidence            23456678877 66653                         34556788999997622      44444444444443

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.83  E-value=4.1e-08  Score=93.12  Aligned_cols=106  Identities=24%  Similarity=0.268  Sum_probs=82.6

Q ss_pred             cchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEE
Q psy7829         114 MNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI  193 (511)
Q Consensus       114 ~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~  193 (511)
                      +..+.+...+++.+.  ..++.+|||+|||+|.++..+++.. +  +|+++|+++.+++.+++++..       .+++++
T Consensus        12 l~d~~i~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~-~--~v~~iE~d~~~~~~l~~~~~~-------~~~v~v   79 (253)
T TIGR00755        12 LIDESVIQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRA-K--KVTAIEIDPRLAEILRKLLSL-------YERLEV   79 (253)
T ss_pred             CCCHHHHHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhC-C--cEEEEECCHHHHHHHHHHhCc-------CCcEEE
Confidence            456677888888775  6788999999999999999999986 3  499999999999999987643       347999


Q ss_pred             EEccCCCCCCCCCCcc---EEEecCCCCchHHHHHhhc-ccCcE
Q psy7829         194 VEADAREGYLPEAPYD---VIYYGGCVSEVPSRVLNQL-KKGGR  233 (511)
Q Consensus       194 ~~~d~~~~~~~~~~fD---~I~~~~~~~~~~~~~~~~L-kpgG~  233 (511)
                      +++|+......  .||   +|+++.+++.-..-+.++| .+++.
T Consensus        80 ~~~D~~~~~~~--~~d~~~~vvsNlPy~i~~~il~~ll~~~~~~  121 (253)
T TIGR00755        80 IEGDALKVDLP--DFPKQLKVVSNLPYNISSPLIFKLLEKPKFR  121 (253)
T ss_pred             EECchhcCChh--HcCCcceEEEcCChhhHHHHHHHHhccCCCc
Confidence            99999764432  466   8899888765555566666 45544

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=98.83  E-value=5.5e-09  Score=92.68  Aligned_cols=101  Identities=24%  Similarity=0.379  Sum_probs=73.2

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccc---ccccccccccccc-ccchhhhhcccC
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH---IDLIANETIEIIP-HILDLCYLNLHR  447 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~---v~~i~~d~~~~l~-~~~d~i~~~l~~  447 (511)
                      .++.+|||+|||+|.+++.+++.. |+.+|+++|+++..++.+.+|+..++   ++++..|..+.++ ..+|.++.|++-
T Consensus        30 ~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~  108 (170)
T PF05175_consen   30 HKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPF  108 (170)
T ss_dssp             HTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---S
T ss_pred             ccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccch
Confidence            378899999999999999999876 66789999999988888877776544   6688888776665 778988888651


Q ss_pred             CcEEEEEcCCcc-----HHHHHHHHHhCCCcEEEEh
Q psy7829         448 GAKVLEIGSGSG-----YLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       448 ~~~vLD~~~g~g-----~~~~~l~~~l~~~g~v~~~  478 (511)
                      .     -+...|     .+.....+.|+|+|.++.+
T Consensus       109 ~-----~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv  139 (170)
T PF05175_consen  109 H-----AGGDDGLDLLRDFIEQARRYLKPGGRLFLV  139 (170)
T ss_dssp             B-----TTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             h-----cccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence            1     111111     1233456788999998666

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>KOG2899|consensus

Probab=98.83  E-value=1e-08  Score=91.52  Aligned_cols=107  Identities=20%  Similarity=0.301  Sum_probs=73.5

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCc--C---------------------
Q psy7829         130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDL--L---------------------  186 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~--~---------------------  186 (511)
                      ....+..+|||||-+|.+++.+|+.+++ ..+.|+||++..++.|+++++..-...  .                     
T Consensus        55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a  133 (288)
T KOG2899|consen   55 DWFEPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA  133 (288)
T ss_pred             cccCcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence            3456788999999999999999999975 569999999999999999876421000  0                     


Q ss_pred             -------CCCCeEEEEccCC---C--CCCCCCCccEEEecCCCCc------------hHHHHHhhcccCcEEEEE
Q psy7829         187 -------DSGRVRIVEADAR---E--GYLPEAPYDVIYYGGCVSE------------VPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       187 -------~~~~v~~~~~d~~---~--~~~~~~~fD~I~~~~~~~~------------~~~~~~~~LkpgG~l~~~  237 (511)
                             ..+|+.|...+..   +  .+.....||+|+|-..-.|            +...+.++|.|||+|++.
T Consensus       134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE  208 (288)
T KOG2899|consen  134 DRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE  208 (288)
T ss_pred             cccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence                   0012222222211   0  0122367999988654433            348899999999999984

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.83  E-value=3.9e-08  Score=93.39  Aligned_cols=103  Identities=24%  Similarity=0.254  Sum_probs=80.7

Q ss_pred             cchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEE
Q psy7829         114 MNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI  193 (511)
Q Consensus       114 ~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~  193 (511)
                      +..+.+...+++.+.  +.++.+|||+|||+|.++..+++..   .+|+++|+++.+++.+++++..       .+++++
T Consensus        12 l~d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~-------~~~v~i   79 (258)
T PRK14896         12 LIDDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIA-------AGNVEI   79 (258)
T ss_pred             cCCHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhcc-------CCCEEE
Confidence            356777888888775  6788999999999999999999973   3699999999999999988754       347999


Q ss_pred             EEccCCCCCCCCCCccEEEecCCCCchHHHHHhhccc
Q psy7829         194 VEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKK  230 (511)
Q Consensus       194 ~~~d~~~~~~~~~~fD~I~~~~~~~~~~~~~~~~Lkp  230 (511)
                      +++|+.+...  ..||.|+++.++..-...+.+.++.
T Consensus        80 i~~D~~~~~~--~~~d~Vv~NlPy~i~s~~~~~l~~~  114 (258)
T PRK14896         80 IEGDALKVDL--PEFNKVVSNLPYQISSPITFKLLKH  114 (258)
T ss_pred             EEeccccCCc--hhceEEEEcCCcccCcHHHHHHHhh
Confidence            9999976432  3589999998886433334444443

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.83  E-value=5.9e-08  Score=92.75  Aligned_cols=115  Identities=21%  Similarity=0.181  Sum_probs=92.1

Q ss_pred             chhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEE
Q psy7829         115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIV  194 (511)
Q Consensus       115 ~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~  194 (511)
                      ..|.+...++++..  .++|..|||--||||.+.+.....   .++++|+|++..|++-|+.|++..+     .....+.
T Consensus       181 ~~P~lAR~mVNLa~--v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~-----i~~~~~~  250 (347)
T COG1041         181 MDPRLARAMVNLAR--VKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYG-----IEDYPVL  250 (347)
T ss_pred             cCHHHHHHHHHHhc--cccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhC-----cCceeEE
Confidence            35666666666665  889999999999999999987665   3579999999999999999999863     4456556


Q ss_pred             Ec-cCCCCCCCCCCccEEEecCCCC---------------chHHHHHhhcccCcEEEEEEc
Q psy7829         195 EA-DAREGYLPEAPYDVIYYGGCVS---------------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       195 ~~-d~~~~~~~~~~fD~I~~~~~~~---------------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      .. |+...+....++|.|.+++++-               ..++.+.+.||+||+++++..
T Consensus       251 ~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         251 KVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             EecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence            55 9887665556799999998871               234778999999999999766

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.83  E-value=1.2e-08  Score=97.18  Aligned_cols=102  Identities=19%  Similarity=0.177  Sum_probs=73.9

Q ss_pred             hcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---cccccccccccccccccccchhhhhc
Q psy7829         368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETIEIIPHILDLCYLN  444 (511)
Q Consensus       368 ~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~~~l~~~~d~i~~~  444 (511)
                      .+.+++|++|||+|||+|..|+.+|..+++.++|+++|+++.+++.+++|+   +..+++++..|...... .      .
T Consensus        66 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~-~------~  138 (264)
T TIGR00446        66 ALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGA-A------V  138 (264)
T ss_pred             HhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhh-h------c
Confidence            367789999999999999999999998866789999999988887666655   45567777777543211 0      0


Q ss_pred             ccCCcEEEEEcC-CccH-------------------------HHHHHHHHhCCCcEEE
Q psy7829         445 LHRGAKVLEIGS-GSGY-------------------------LATLMAHLVGPTGHVT  476 (511)
Q Consensus       445 l~~~~~vLD~~~-g~g~-------------------------~~~~l~~~l~~~g~v~  476 (511)
                      -..+..++|..| |+|.                         +....++.++|+|.++
T Consensus       139 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lv  196 (264)
T TIGR00446       139 PKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLV  196 (264)
T ss_pred             cCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence            124456677777 5553                         3344567789999875

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.83  E-value=2.4e-08  Score=96.48  Aligned_cols=126  Identities=17%  Similarity=0.118  Sum_probs=76.0

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccc----ccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHID----LIANETI  431 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~----~i~~d~~  431 (511)
                      +...+..++........++.+|||+|||+|.+++.+++.. . .+|+++|+++.+++.+++|...+++.    +..++..
T Consensus       142 ~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g-~-~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~  219 (288)
T TIGR00406       142 THPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLG-A-AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE  219 (288)
T ss_pred             CCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcC-C-CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc
Confidence            3344444444322234578999999999999999888653 3 69999999999999888887755433    2333222


Q ss_pred             ccccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHh
Q psy7829         432 EIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIAN  491 (511)
Q Consensus       432 ~~l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~  491 (511)
                      ...+..+|.++.++...        ..-.+...+.+.++|+|.++..   ..-.+...+.+++
T Consensus       220 ~~~~~~fDlVvan~~~~--------~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~  274 (288)
T TIGR00406       220 QPIEGKADVIVANILAE--------VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQ  274 (288)
T ss_pred             cccCCCceEEEEecCHH--------HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHc
Confidence            22233455544432110        0113445667889999998764   3333334444443

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.83  E-value=1.9e-08  Score=99.63  Aligned_cols=102  Identities=17%  Similarity=0.139  Sum_probs=79.7

Q ss_pred             CCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCC---------
Q psy7829         134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLP---------  204 (511)
Q Consensus       134 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---------  204 (511)
                      +.+|||+|||+|.+++.+++...   +|+++|+++.+++.|++|+..++     .+|++|+.+|+.+....         
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~~~  269 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANN-----IDNVQIIRMSAEEFTQAMNGVREFRR  269 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEEcCHHHHHHHHhhcccccc
Confidence            34799999999999999998752   69999999999999999998864     45899999998642210         


Q ss_pred             -------CCCccEEEecCCCCchHHHH-HhhcccCcEEEEEEccCCC
Q psy7829         205 -------EAPYDVIYYGGCVSEVPSRV-LNQLKKGGRILAPIGPMDD  243 (511)
Q Consensus       205 -------~~~fD~I~~~~~~~~~~~~~-~~~LkpgG~l~~~~~~~~~  243 (511)
                             ...||+|+.+++-..+...+ ....+|++.+++++.+..-
T Consensus       270 ~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~~~~ivYvsC~p~tl  316 (353)
T TIGR02143       270 LKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQAYERILYISCNPETL  316 (353)
T ss_pred             ccccccccCCCCEEEECCCCCCCcHHHHHHHHcCCcEEEEEcCHHHH
Confidence                   12389999999965554443 4455789999999887543

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.82  E-value=2.6e-08  Score=96.19  Aligned_cols=83  Identities=17%  Similarity=0.249  Sum_probs=64.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhcc-CCCcCCCCCeEEEE-ccCC---CCC-CCCC
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKG-NKDLLDSGRVRIVE-ADAR---EGY-LPEA  206 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~~~~~v~~~~-~d~~---~~~-~~~~  206 (511)
                      .+.++||||||+|.+...++... +..+++|+|+++.+++.|++|++.+ +    ...+|+++. .|..   ... ...+
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~----l~~~I~~~~~~~~~~i~~~i~~~~~  188 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPG----LNGAIRLRLQKDSKAIFKGIIHKNE  188 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccC----CcCcEEEEEccchhhhhhcccccCC
Confidence            45789999999999888888775 5789999999999999999999987 4    345788764 3322   221 1346


Q ss_pred             CccEEEecCCCCch
Q psy7829         207 PYDVIYYGGCVSEV  220 (511)
Q Consensus       207 ~fD~I~~~~~~~~~  220 (511)
                      .||+|+||++++.-
T Consensus       189 ~fDlivcNPPf~~s  202 (321)
T PRK11727        189 RFDATLCNPPFHAS  202 (321)
T ss_pred             ceEEEEeCCCCcCc
Confidence            89999999998643

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.82  E-value=3e-08  Score=94.93  Aligned_cols=102  Identities=20%  Similarity=0.159  Sum_probs=78.1

Q ss_pred             chhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEE
Q psy7829         115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIV  194 (511)
Q Consensus       115 ~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~  194 (511)
                      ..+.+...+++.+.  +.++.+|||+|||+|.++..+++.. +  +|+++|+++.+++.+++++..        ++++++
T Consensus        26 ~~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~-~--~v~avE~d~~~~~~~~~~~~~--------~~v~~i   92 (272)
T PRK00274         26 IDENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERA-A--KVTAVEIDRDLAPILAETFAE--------DNLTII   92 (272)
T ss_pred             CCHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhC-C--cEEEEECCHHHHHHHHHhhcc--------CceEEE
Confidence            44557777777775  6788999999999999999999985 3  799999999999999887632        479999


Q ss_pred             EccCCCCCCCCCCccEEEecCCCCchHHHHHhhcc
Q psy7829         195 EADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLK  229 (511)
Q Consensus       195 ~~d~~~~~~~~~~fD~I~~~~~~~~~~~~~~~~Lk  229 (511)
                      ++|+.+...+.-.+|.|++|.++.--..-+.++|.
T Consensus        93 ~~D~~~~~~~~~~~~~vv~NlPY~iss~ii~~~l~  127 (272)
T PRK00274         93 EGDALKVDLSELQPLKVVANLPYNITTPLLFHLLE  127 (272)
T ss_pred             EChhhcCCHHHcCcceEEEeCCccchHHHHHHHHh
Confidence            99988643321115899999887544444555554

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.82  E-value=2.1e-08  Score=98.88  Aligned_cols=102  Identities=22%  Similarity=0.209  Sum_probs=84.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC----CCCCc
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL----PEAPY  208 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~f  208 (511)
                      .|.+|||+.|=||.++.+.|...  ..+|++||.|..+++.|++|++.||   +...++.|+++|+.+.+.    ...+|
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~gG--A~~vt~VD~S~~al~~a~~N~~LNg---~~~~~~~~i~~Dvf~~l~~~~~~g~~f  291 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAALGG--ASEVTSVDLSKRALEWARENAELNG---LDGDRHRFIVGDVFKWLRKAERRGEKF  291 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHhcC--CCceEEEeccHHHHHHHHHHHHhcC---CCccceeeehhhHHHHHHHHHhcCCcc
Confidence            39999999999999999988864  3579999999999999999999987   356679999999975332    23589


Q ss_pred             cEEEecCCC---------------CchHHHHHhhcccCcEEEEEEc
Q psy7829         209 DVIYYGGCV---------------SEVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       209 D~I~~~~~~---------------~~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      |+|++++|-               ..+...+.+.|+|||.+++...
T Consensus       292 DlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~  337 (393)
T COG1092         292 DLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC  337 (393)
T ss_pred             cEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence            999999875               1234678999999999998654

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.82  E-value=2e-09  Score=95.04  Aligned_cols=114  Identities=18%  Similarity=0.249  Sum_probs=80.8

Q ss_pred             hhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEE
Q psy7829         116 APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE  195 (511)
Q Consensus       116 ~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  195 (511)
                      -|.+.+.++..+.  ..+-.++||+|||||..+..+.....   +++|+|+|+.|++.|.++-        .++  +..+
T Consensus       110 vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eKg--------~YD--~L~~  174 (287)
T COG4976         110 VPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEKG--------LYD--TLYV  174 (287)
T ss_pred             cHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhcc--------chH--HHHH
Confidence            4566666666665  44578999999999999998887763   4999999999999998751        111  2233


Q ss_pred             ccCCCCC--CCCCCccEEEecCCCC------chHHHHHhhcccCcEEEEEEccCCCc
Q psy7829         196 ADAREGY--LPEAPYDVIYYGGCVS------EVPSRVLNQLKKGGRILAPIGPMDDF  244 (511)
Q Consensus       196 ~d~~~~~--~~~~~fD~I~~~~~~~------~~~~~~~~~LkpgG~l~~~~~~~~~~  244 (511)
                      +|+....  .....||+|.+..++.      .+..-....|+|||.+.+++..-...
T Consensus       175 Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~  231 (287)
T COG4976         175 AEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDD  231 (287)
T ss_pred             HHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCC
Confidence            3332111  2347799998876654      34567889999999999988755443

>KOG2940|consensus

Probab=98.82  E-value=9.8e-10  Score=96.77  Aligned_cols=175  Identities=14%  Similarity=0.063  Sum_probs=122.8

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829         121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE  200 (511)
Q Consensus       121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  200 (511)
                      .++.+.+....+....++|||||-|++..++....  -.+++-+|.|-.|++.++..-. .      .-.+....+|-+.
T Consensus        60 ~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qd-p------~i~~~~~v~DEE~  130 (325)
T KOG2940|consen   60 DRLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQD-P------SIETSYFVGDEEF  130 (325)
T ss_pred             HHHHHHHHHHhhhCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCC-C------ceEEEEEecchhc
Confidence            34445544334567789999999999999987764  4679999999999999876411 1      1124566777665


Q ss_pred             CCCCCCCccEEEecCCCCchH------HHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecce---EEEec
Q psy7829         201 GYLPEAPYDVIYYGGCVSEVP------SRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEV---AYDAI  271 (511)
Q Consensus       201 ~~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l  271 (511)
                      ....++++|+|+++..+||+.      .+++..|||+|.++.++...+...+++.-....+  ..++....-   -|...
T Consensus       131 Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAe--lER~GGiSphiSPf~qv  208 (325)
T KOG2940|consen  131 LDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAE--LEREGGISPHISPFTQV  208 (325)
T ss_pred             ccccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHH--HHhccCCCCCcChhhhh
Confidence            555679999999999988764      6889999999999987665544333221111111  111222222   34455


Q ss_pred             ccccccccccccccCccccccccccccchhhHHHH
Q psy7829         272 MRKALQMDIHKFQMDPVDENLFTLMDKDSDELFSE  306 (511)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  306 (511)
                      .+.+..+.++||.+..++.+....-++.+.+++.+
T Consensus       209 rDiG~LL~rAGF~m~tvDtDEi~v~Yp~mfeLm~d  243 (325)
T KOG2940|consen  209 RDIGNLLTRAGFSMLTVDTDEIVVGYPRMFELMED  243 (325)
T ss_pred             hhhhhHHhhcCcccceecccceeecCchHHHHHHH
Confidence            57888999999999999999999889888887765

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.82  E-value=3.2e-08  Score=90.77  Aligned_cols=101  Identities=23%  Similarity=0.247  Sum_probs=85.9

Q ss_pred             CEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC---CCCCCCCccEE
Q psy7829         135 AKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE---GYLPEAPYDVI  211 (511)
Q Consensus       135 ~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~~~~fD~I  211 (511)
                      ..+||||||.|.+...+|+.. |+..++|||+....+..|.+.+.+.+     .+|+.+++.|+..   .+.++++.|.|
T Consensus        50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~-----l~Nlri~~~DA~~~l~~~~~~~sl~~I  123 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELG-----LKNLRLLCGDAVEVLDYLIPDGSLDKI  123 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcC-----CCcEEEEcCCHHHHHHhcCCCCCeeEE
Confidence            589999999999999999996 88999999999999999999999864     4599999999874   33455699999


Q ss_pred             EecCCCCch--------------HHHHHhhcccCcEEEEEEccC
Q psy7829         212 YYGGCVSEV--------------PSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       212 ~~~~~~~~~--------------~~~~~~~LkpgG~l~~~~~~~  241 (511)
                      +++.+-+|.              ++.+.+.|+|||.|.+..+..
T Consensus       124 ~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~  167 (227)
T COG0220         124 YINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE  167 (227)
T ss_pred             EEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence            999877443              478899999999999976643

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.81  E-value=7.3e-08  Score=81.12  Aligned_cols=115  Identities=18%  Similarity=0.167  Sum_probs=91.5

Q ss_pred             chhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEE
Q psy7829         115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIV  194 (511)
Q Consensus       115 ~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~  194 (511)
                      +++.+.++|...+.  ...|.-|||+|.|+|.++..+.++.-+...++++|.|++.+....+...          .++++
T Consensus        32 sSs~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p----------~~~ii   99 (194)
T COG3963          32 SSSILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP----------GVNII   99 (194)
T ss_pred             CcHHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC----------Ccccc
Confidence            45567777888776  7789999999999999999999887777889999999999988877643          46789


Q ss_pred             EccCCCCC-----CCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEEEccC
Q psy7829         195 EADAREGY-----LPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       195 ~~d~~~~~-----~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~~~~~  241 (511)
                      .+|+...-     .....||.|+|..++-.+        ++.+...|.+||.++.-...+
T Consensus       100 ~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp  159 (194)
T COG3963         100 NGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP  159 (194)
T ss_pred             ccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence            99986421     234679999999887544        377888999999998755543

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.81  E-value=2e-08  Score=92.21  Aligned_cols=116  Identities=28%  Similarity=0.373  Sum_probs=81.3

Q ss_pred             chhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhc-cCC---C---cCC
Q psy7829         115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISK-GNK---D---LLD  187 (511)
Q Consensus       115 ~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~~---~---~~~  187 (511)
                      .+|.+...+-. +.  ..++.+||..|||.|+-...||.+.   .+|+|+|+|+.+++.+.+.... ...   .   ...
T Consensus        22 ~~p~L~~~~~~-l~--~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~   95 (218)
T PF05724_consen   22 PNPALVEYLDS-LA--LKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQ   95 (218)
T ss_dssp             STHHHHHHHHH-HT--TSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEET
T ss_pred             CCHHHHHHHHh-cC--CCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCcccccceeeec
Confidence            45555554433 43  6678899999999999999999874   3699999999999998443221 000   0   012


Q ss_pred             CCCeEEEEccCCCCCCC-CCCccEEEecCCCCchH--------HHHHhhcccCcEEEE
Q psy7829         188 SGRVRIVEADAREGYLP-EAPYDVIYYGGCVSEVP--------SRVLNQLKKGGRILA  236 (511)
Q Consensus       188 ~~~v~~~~~d~~~~~~~-~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~l~~  236 (511)
                      ..+|++.++|+...... .++||+|+-...+..++        +.+.++|+|||.+++
T Consensus        96 ~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL  153 (218)
T PF05724_consen   96 AGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL  153 (218)
T ss_dssp             TSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred             CCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence            45789999999874332 25799999887776554        678999999999443

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG1663|consensus

Probab=98.81  E-value=4.6e-08  Score=87.31  Aligned_cols=116  Identities=20%  Similarity=0.316  Sum_probs=92.7

Q ss_pred             hhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEE
Q psy7829         116 APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE  195 (511)
Q Consensus       116 ~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  195 (511)
                      .|.....+..++.  +..+.++||||.=+|+.+..+|..+.++++|+++|++++..+.+.+..+.+|    ....|++++
T Consensus        58 ~~d~g~fl~~li~--~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag----v~~KI~~i~  131 (237)
T KOG1663|consen   58 GPDKGQFLQMLIR--LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG----VDHKITFIE  131 (237)
T ss_pred             ChHHHHHHHHHHH--HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc----ccceeeeee
Confidence            3434343333443  5578899999999999999999999889999999999999999998888876    467899999


Q ss_pred             ccCCCCC------CCCCCccEEEecCCCC---chHHHHHhhcccCcEEEEE
Q psy7829         196 ADAREGY------LPEAPYDVIYYGGCVS---EVPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       196 ~d~~~~~------~~~~~fD~I~~~~~~~---~~~~~~~~~LkpgG~l~~~  237 (511)
                      +++.+..      ...++||.+|.+.--.   ....++.++||+||.|++-
T Consensus       132 g~a~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~D  182 (237)
T KOG1663|consen  132 GPALESLDELLADGESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVD  182 (237)
T ss_pred             cchhhhHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEe
Confidence            9986422      1348899999986543   3447899999999999984

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.80  E-value=3.3e-08  Score=88.89  Aligned_cols=100  Identities=28%  Similarity=0.312  Sum_probs=75.5

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCcc
Q psy7829         130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYD  209 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  209 (511)
                      ...++..|+|+.||-|.+++.+|+.. ...+|+++|++|.+++..++|++.++    ...++..+++|..+... .+.||
T Consensus        98 ~v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNk----v~~~i~~~~~D~~~~~~-~~~~d  171 (200)
T PF02475_consen   98 LVKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNK----VENRIEVINGDAREFLP-EGKFD  171 (200)
T ss_dssp             C--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-----TTTEEEEES-GGG----TT-EE
T ss_pred             cCCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcC----CCCeEEEEcCCHHHhcC-ccccC
Confidence            36789999999999999999999864 56789999999999999999999986    35679999999987554 58899


Q ss_pred             EEEecCCCC--chHHHHHhhcccCcEEE
Q psy7829         210 VIYYGGCVS--EVPSRVLNQLKKGGRIL  235 (511)
Q Consensus       210 ~I~~~~~~~--~~~~~~~~~LkpgG~l~  235 (511)
                      .|+++.+-.  .++..+.+.+++||.+.
T Consensus       172 rvim~lp~~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  172 RVIMNLPESSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             EEEE--TSSGGGGHHHHHHHEEEEEEEE
T ss_pred             EEEECChHHHHHHHHHHHHHhcCCcEEE
Confidence            999998753  46688999999999874

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.79  E-value=2.5e-08  Score=90.51  Aligned_cols=116  Identities=17%  Similarity=0.284  Sum_probs=80.3

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---cccccccccccccccc----c-ccchhhhh
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETIEII----P-HILDLCYL  443 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~~~l----~-~~~d~i~~  443 (511)
                      ....+|||||||+|.++..+|+.. |+.+|+|+|++.++++.+.++.   +..|++++++|..+..    + ..++.++.
T Consensus        15 ~~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~   93 (194)
T TIGR00091        15 NKAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFL   93 (194)
T ss_pred             CCCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence            356799999999999999999887 7789999999998888766554   3568899988875532    2 24555555


Q ss_pred             cccCCc--------EEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcC
Q psy7829         444 NLHRGA--------KVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIS  493 (511)
Q Consensus       444 ~l~~~~--------~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~  493 (511)
                      +.+..+        +++     .-.+...+++.|+|+|.++..   ....+...+.+...+
T Consensus        94 ~~pdpw~k~~h~~~r~~-----~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~  149 (194)
T TIGR00091        94 NFPDPWPKKRHNKRRIT-----QPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSEND  149 (194)
T ss_pred             ECCCcCCCCCccccccC-----CHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCC
Confidence            543221        111     124567788999999999776   444444445555443

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.79  E-value=2.2e-08  Score=102.86  Aligned_cols=102  Identities=24%  Similarity=0.334  Sum_probs=75.9

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---cccccccccccccccccccchhhhhcc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETIEIIPHILDLCYLNL  445 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~~~l~~~~d~i~~~l  445 (511)
                      +...+|++|||+|||+|..+..+++.+++.++|+++|+++++++.+++++   +..+++++++|.....+.        .
T Consensus       246 l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~--------~  317 (445)
T PRK14904        246 LNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPE--------E  317 (445)
T ss_pred             cCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccC--------C
Confidence            67788999999999999999999988766689999999988887666554   455678888876553221        1


Q ss_pred             cCCcEEEEEcC-CccHH-------------------------HHHHHHHhCCCcEEEEh
Q psy7829         446 HRGAKVLEIGS-GSGYL-------------------------ATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       446 ~~~~~vLD~~~-g~g~~-------------------------~~~l~~~l~~~g~v~~~  478 (511)
                      ..+..++|..| |+|.+                         ...+++.++|||+++-.
T Consensus       318 ~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvys  376 (445)
T PRK14904        318 QPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYA  376 (445)
T ss_pred             CCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            23456678777 67753                         34456778999998644

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.78  E-value=3.1e-08  Score=88.06  Aligned_cols=109  Identities=21%  Similarity=0.231  Sum_probs=81.2

Q ss_pred             HHHHHhhcCCCCC-EEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCe-EEEEccCCC
Q psy7829         123 AAENLKLHLVDGA-KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRV-RIVEADARE  200 (511)
Q Consensus       123 ~~~~l~~~~~~~~-~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v-~~~~~d~~~  200 (511)
                      +++.|.+.+.+.. +|||||||||..+.++|+.+ |..+..-.|.++......+..+...+     .+|+ .-+..|+..
T Consensus        14 Il~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~-----~~Nv~~P~~lDv~~   87 (204)
T PF06080_consen   14 ILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAG-----LPNVRPPLALDVSA   87 (204)
T ss_pred             HHHHHHHHhCccCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcC-----CcccCCCeEeecCC
Confidence            3444444455555 59999999999999999998 88888899999999888787776653     3343 345566664


Q ss_pred             C-CC-------CCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEE
Q psy7829         201 G-YL-------PEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       201 ~-~~-------~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~  237 (511)
                      . ++       ..++||.|++.+++|-+        .+.+.+.|+|||.|++.
T Consensus        88 ~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y  140 (204)
T PF06080_consen   88 PPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLY  140 (204)
T ss_pred             CCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence            3 21       23589999999888644        36788999999999873

The function of this family is unknown.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.77  E-value=3.3e-08  Score=100.59  Aligned_cols=104  Identities=13%  Similarity=0.133  Sum_probs=75.9

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---cccccccccccccccccccchhhhhcc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETIEIIPHILDLCYLNL  445 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~~~l~~~~d~i~~~l  445 (511)
                      +.+.+|.+|||+|||+|..|+.++..++++++|+++|+++++++.+++|+   +..+++++.+|+..... ..     .-
T Consensus       233 l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~-~~-----~~  306 (431)
T PRK14903        233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTE-YV-----QD  306 (431)
T ss_pred             hCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh-hh-----hc
Confidence            67789999999999999999999999877799999999988887766554   45567777777644211 00     11


Q ss_pred             cCCcEEEEEcC-CccHH-------------------------HHHHHHHhCCCcEEEEh
Q psy7829         446 HRGAKVLEIGS-GSGYL-------------------------ATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       446 ~~~~~vLD~~~-g~g~~-------------------------~~~l~~~l~~~g~v~~~  478 (511)
                      ..+..++|..| |.|.+                         ....++.++|||.++-.
T Consensus       307 ~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs  365 (431)
T PRK14903        307 TFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYS  365 (431)
T ss_pred             cCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            23456678877 67663                         33556788999987543

>PLN02244 tocopherol O-methyltransferase

Probab=98.77  E-value=3.5e-08  Score=97.63  Aligned_cols=111  Identities=15%  Similarity=0.246  Sum_probs=76.2

Q ss_pred             HHHHHHHHhhcCC-----CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----cccccccccc
Q psy7829         359 SIAHILDLCYLNL-----HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANE  429 (511)
Q Consensus       359 ~~~~~~~~~~~~~-----~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d  429 (511)
                      .+..++..  +.+     .++.+|||||||+|.++..+++.++  .+|+|+|+++.+++.++++..    .++++++.+|
T Consensus       101 ~~~~~l~~--~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g--~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D  176 (340)
T PLN02244        101 MIEESLAW--AGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYG--ANVKGITLSPVQAARANALAAAQGLSDKVSFQVAD  176 (340)
T ss_pred             HHHHHHHh--cCCCcccCCCCCeEEEecCCCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcC
Confidence            34444554  455     6789999999999999999998874  799999999999888776543    2457888887


Q ss_pred             cccc--ccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         430 TIEI--IPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       430 ~~~~--l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..+.  .+..||.++....- ..+    .....+...+.+.|+|||.++.+
T Consensus       177 ~~~~~~~~~~FD~V~s~~~~-~h~----~d~~~~l~e~~rvLkpGG~lvi~  222 (340)
T PLN02244        177 ALNQPFEDGQFDLVWSMESG-EHM----PDKRKFVQELARVAAPGGRIIIV  222 (340)
T ss_pred             cccCCCCCCCccEEEECCch-hcc----CCHHHHHHHHHHHcCCCcEEEEE
Confidence            6442  23456655432110 011    12334567788999999998764

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.76  E-value=3.1e-08  Score=95.29  Aligned_cols=105  Identities=24%  Similarity=0.376  Sum_probs=73.7

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---cccccccccccccccc--cccchhhhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETIEII--PHILDLCYL  443 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~~~l--~~~~d~i~~  443 (511)
                      ..++++++|||+|||+|..++.+++..++.++|+++|+++++++.++++.   +.++++++.++..+.-  +..+|.++.
T Consensus        73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~  152 (272)
T PRK11873         73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIIS  152 (272)
T ss_pred             ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEE
Confidence            46789999999999999999988888877789999999999888877764   3456777766643311  123444433


Q ss_pred             cccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       444 ~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +.     ++....+...+...+.+.|+|+|.++..
T Consensus       153 ~~-----v~~~~~d~~~~l~~~~r~LkpGG~l~i~  182 (272)
T PRK11873        153 NC-----VINLSPDKERVFKEAFRVLKPGGRFAIS  182 (272)
T ss_pred             cC-----cccCCCCHHHHHHHHHHHcCCCcEEEEE
Confidence            21     1111123345667888899999998763

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.76  E-value=9.7e-09  Score=91.05  Aligned_cols=107  Identities=26%  Similarity=0.303  Sum_probs=84.5

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC--CCCCCc
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY--LPEAPY  208 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~f  208 (511)
                      .+.|.+|||.|+|-||.++..+++.  ..+|+.+|.++..++.|.-|--..+   +...+++++.+|+.+..  ..+.+|
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~rG--A~~VitvEkdp~VLeLa~lNPwSr~---l~~~~i~iilGD~~e~V~~~~D~sf  206 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALERG--AIHVITVEKDPNVLELAKLNPWSRE---LFEIAIKIILGDAYEVVKDFDDESF  206 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHcC--CcEEEEEeeCCCeEEeeccCCCCcc---ccccccEEecccHHHHHhcCCcccc
Confidence            4579999999999999999998875  3489999999999999876632222   23447899999987522  245889


Q ss_pred             cEEEecCCCC---------chHHHHHhhcccCcEEEEEEccCC
Q psy7829         209 DVIYYGGCVS---------EVPSRVLNQLKKGGRILAPIGPMD  242 (511)
Q Consensus       209 D~I~~~~~~~---------~~~~~~~~~LkpgG~l~~~~~~~~  242 (511)
                      |+|+-+++--         .+.+++++.|||||+++-.++.+.
T Consensus       207 DaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg  249 (287)
T COG2521         207 DAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG  249 (287)
T ss_pred             ceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence            9999987752         234789999999999998888665

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=3.5e-08  Score=99.36  Aligned_cols=116  Identities=28%  Similarity=0.276  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc
Q psy7829         118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD  197 (511)
Q Consensus       118 ~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  197 (511)
                      .+...+++.+.  ..++.++||+-||.|.+++.+|+..   .+|+|+|+++++++.|++|++.++     .+|++|..+|
T Consensus       280 kl~~~a~~~~~--~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~-----i~N~~f~~~~  349 (432)
T COG2265         280 KLYETALEWLE--LAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANG-----IDNVEFIAGD  349 (432)
T ss_pred             HHHHHHHHHHh--hcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcC-----CCcEEEEeCC
Confidence            34555555554  4577899999999999999999765   469999999999999999999985     6679999999


Q ss_pred             CCCCCCC---CCCccEEEecCCCCchHH---HHHhhcccCcEEEEEEccCCC
Q psy7829         198 AREGYLP---EAPYDVIYYGGCVSEVPS---RVLNQLKKGGRILAPIGPMDD  243 (511)
Q Consensus       198 ~~~~~~~---~~~fD~I~~~~~~~~~~~---~~~~~LkpgG~l~~~~~~~~~  243 (511)
                      +++....   ...+|.|+.+++-..+.+   +....++|-..+++++.+.+-
T Consensus       350 ae~~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP~Tl  401 (432)
T COG2265         350 AEEFTPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLKPKRIVYVSCNPATL  401 (432)
T ss_pred             HHHHhhhccccCCCCEEEECCCCCCCCHHHHHHHHhcCCCcEEEEeCCHHHH
Confidence            8753322   247899999998765553   334456888899999887653

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=98.75  E-value=6.2e-08  Score=86.88  Aligned_cols=123  Identities=15%  Similarity=0.146  Sum_probs=79.9

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc--ccccccccccccccccchhhhhccc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN--HIDLIANETIEIIPHILDLCYLNLH  446 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~--~v~~i~~d~~~~l~~~~d~i~~~l~  446 (511)
                      +...++.+|||+|||+|.++..+++..   .+|+++|+++++++.+++|+...  +++++.+|..+..+..+|.++.+.+
T Consensus        15 l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p   91 (179)
T TIGR00537        15 LRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPP   91 (179)
T ss_pred             HHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCC
Confidence            445567899999999999999998765   38999999999999888776533  4666777765555556777766543


Q ss_pred             CCc--------EEEEEcC--C------ccHHHHHHHHHhCCCcEEEEh--HHH-HHHHHHHHHhcCC
Q psy7829         447 RGA--------KVLEIGS--G------SGYLATLMAHLVGPTGHVTGL--EHM-MDIAIESIANIST  494 (511)
Q Consensus       447 ~~~--------~vLD~~~--g------~g~~~~~l~~~l~~~g~v~~~--~~m-l~~a~~~~~~~~~  494 (511)
                      -..        ...++.-  |      .-.+...+.+.++|+|.++.+  ... .....+.+++.|+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf  158 (179)
T TIGR00537        92 YLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGF  158 (179)
T ss_pred             CCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCC
Confidence            210        0011100  1      112345566788999998777  111 3344455555555

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>KOG3010|consensus

Probab=98.74  E-value=1.9e-08  Score=90.07  Aligned_cols=98  Identities=16%  Similarity=0.194  Sum_probs=68.1

Q ss_pred             CCCC-EEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         132 VDGA-KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       132 ~~~~-~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      .++. .++|+|||+|..++.++..+.   +|+|+|+|+.|++.|++.....-    ......+...+.......+++.|+
T Consensus        31 ~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y----~~t~~~ms~~~~v~L~g~e~SVDl  103 (261)
T KOG3010|consen   31 TEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTY----CHTPSTMSSDEMVDLLGGEESVDL  103 (261)
T ss_pred             CCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCccc----ccCCccccccccccccCCCcceee
Confidence            3444 799999999988899999874   49999999999999887543210    001122222222222223589999


Q ss_pred             EEecCCCCchH-----HHHHhhcccCcEEEE
Q psy7829         211 IYYGGCVSEVP-----SRVLNQLKKGGRILA  236 (511)
Q Consensus       211 I~~~~~~~~~~-----~~~~~~LkpgG~l~~  236 (511)
                      |++..++|++.     +.+.++||+.|.++.
T Consensus       104 I~~Aqa~HWFdle~fy~~~~rvLRk~Gg~ia  134 (261)
T KOG3010|consen  104 ITAAQAVHWFDLERFYKEAYRVLRKDGGLIA  134 (261)
T ss_pred             ehhhhhHHhhchHHHHHHHHHHcCCCCCEEE
Confidence            99998888763     789999988774444

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.74  E-value=4.1e-08  Score=92.77  Aligned_cols=106  Identities=15%  Similarity=0.207  Sum_probs=71.0

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHh-CCCcEEEEEcCCHHHHHHHHhhcc----ccccccccccccccccccchhhhhc
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLV-GPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETIEIIPHILDLCYLN  444 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~-~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~~~l~~~~d~i~~~  444 (511)
                      .+.++.+|||+|||+|..+..+++.+ .|+.+|+++|+++++++.+++++.    ..++++++++..+.....+|.+..+
T Consensus        53 ~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~  132 (247)
T PRK15451         53 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLN  132 (247)
T ss_pred             hCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehh
Confidence            35688999999999999999998754 467899999999999999888775    2357888777544322223322221


Q ss_pred             ccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         445 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       445 l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..  -..++ ....-.+...+++.|+|||.++..
T Consensus       133 ~~--l~~l~-~~~~~~~l~~i~~~LkpGG~l~l~  163 (247)
T PRK15451        133 FT--LQFLE-PSERQALLDKIYQGLNPGGALVLS  163 (247)
T ss_pred             hH--HHhCC-HHHHHHHHHHHHHhcCCCCEEEEE
Confidence            10  00000 000123567788899999998764

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.74  E-value=1.1e-07  Score=94.05  Aligned_cols=141  Identities=16%  Similarity=0.102  Sum_probs=87.4

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc--cccccccccc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN--HIDLIANETI  431 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~--~v~~i~~d~~  431 (511)
                      |.+...+..++.    .+.++.+|||+|||+|.+++.+++.. ++.+|+++|+++++++.+++|....  +++++++|..
T Consensus       236 peTE~LVe~aL~----~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~  310 (423)
T PRK14966        236 PETEHLVEAVLA----RLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGARVEFAHGSWF  310 (423)
T ss_pred             ccHHHHHHHhhh----ccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchh
Confidence            445555544443    33467799999999999999999876 6689999999999998888776532  5778888764


Q ss_pred             ccc---cccchhhhhcccCCc----------------EEEEEc-CCcc---HHHHHHHHHhCCCcEEEEh--HHHHHHHH
Q psy7829         432 EII---PHILDLCYLNLHRGA----------------KVLEIG-SGSG---YLATLMAHLVGPTGHVTGL--EHMMDIAI  486 (511)
Q Consensus       432 ~~l---~~~~d~i~~~l~~~~----------------~vLD~~-~g~g---~~~~~l~~~l~~~g~v~~~--~~ml~~a~  486 (511)
                      +..   ...+|.++.|.+.-.                ..|+-| .|..   .+...+.+.|+|+|.++..  ..-.+..+
T Consensus       311 e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~  390 (423)
T PRK14966        311 DTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVR  390 (423)
T ss_pred             ccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHH
Confidence            431   235788887764211                012111 1111   2233445678999987654  32233444


Q ss_pred             HHHHhcCCCceEE
Q psy7829         487 ESIANISTNHIDL  499 (511)
Q Consensus       487 ~~~~~~~~~~i~~  499 (511)
                      +.+.+.|+..+++
T Consensus       391 ~ll~~~Gf~~v~v  403 (423)
T PRK14966        391 GVLAENGFSGVET  403 (423)
T ss_pred             HHHHHCCCcEEEE
Confidence            4455555544443

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.74  E-value=8e-08  Score=90.66  Aligned_cols=138  Identities=15%  Similarity=0.158  Sum_probs=89.8

Q ss_pred             CCCHHHHHHHHHHhhcC-CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccc
Q psy7829         354 PSSERSIAHILDLCYLN-LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIE  432 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~  432 (511)
                      +.+...+..++..  +. ..++.+|||+|||+|.+++.+++.. +..+|+++|+++++++.+++|+...+++++++|..+
T Consensus        68 ~~Te~Lv~~~l~~--~~~~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~  144 (251)
T TIGR03704        68 RRTEFLVDEAAAL--ARPRSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYD  144 (251)
T ss_pred             ccHHHHHHHHHHh--hcccCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechh
Confidence            3455556555553  22 2234689999999999999999886 457999999999999998888876667788887655


Q ss_pred             ccc----ccchhhhhcccCCc--E-------------EEEEcCC-cc-----HHHHHHHHHhCCCcEEEEh--HHHHHHH
Q psy7829         433 IIP----HILDLCYLNLHRGA--K-------------VLEIGSG-SG-----YLATLMAHLVGPTGHVTGL--EHMMDIA  485 (511)
Q Consensus       433 ~l~----~~~d~i~~~l~~~~--~-------------vLD~~~g-~g-----~~~~~l~~~l~~~g~v~~~--~~ml~~a  485 (511)
                      .++    ..+|.++.|.+--.  .             -..+..| .|     .+...+.+.|+|+|.++..  .......
T Consensus       145 ~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v  224 (251)
T TIGR03704       145 ALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLA  224 (251)
T ss_pred             hcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHH
Confidence            432    34677766653210  0             0011122 22     3344556788999998866  3334455


Q ss_pred             HHHHHhcCC
Q psy7829         486 IESIANIST  494 (511)
Q Consensus       486 ~~~~~~~~~  494 (511)
                      .+.+.+.++
T Consensus       225 ~~~l~~~g~  233 (251)
T TIGR03704       225 VEAFARAGL  233 (251)
T ss_pred             HHHHHHCCC
Confidence            556666666

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.73  E-value=1.2e-07  Score=89.01  Aligned_cols=118  Identities=14%  Similarity=0.193  Sum_probs=80.7

Q ss_pred             HHHHHHHHHhhcCC-CCCEEEEEcCCcc----HHHHHHHHHhC----CCceEEEEeCCHHHHHHHHHHH-----------
Q psy7829         119 QIADAAENLKLHLV-DGAKVLDLGSGSG----YQTCVFAHMVG----PTGKVIGVEHIPELIEASLRNI-----------  178 (511)
Q Consensus       119 ~~~~~~~~l~~~~~-~~~~vLDiG~G~G----~~~~~la~~~~----~~~~v~~iD~~~~~~~~a~~~~-----------  178 (511)
                      +...++..+....+ ..-+|+-+||+||    .+++.+.+..+    ...+|+|+|+|..+++.|+.-.           
T Consensus        81 l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~  160 (268)
T COG1352          81 LRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLP  160 (268)
T ss_pred             HHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCC
Confidence            33444544432222 3669999999999    35556666653    2578999999999999998311           


Q ss_pred             --------hccCCC-c----CCCCCeEEEEccCCCCCCCCCCccEEEecCCC--------CchHHHHHhhcccCcEEEE
Q psy7829         179 --------SKGNKD-L----LDSGRVRIVEADAREGYLPEAPYDVIYYGGCV--------SEVPSRVLNQLKKGGRILA  236 (511)
Q Consensus       179 --------~~~~~~-~----~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~--------~~~~~~~~~~LkpgG~l~~  236 (511)
                              .+.+.+ +    -....|.|...|+....+..+.||+|+|-+++        ..+...++..|+|||.|++
T Consensus       161 ~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~Lfl  239 (268)
T COG1352         161 PELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFL  239 (268)
T ss_pred             HHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEE
Confidence                    011100 1    01245889999988655344789999998887        3456789999999999997

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.73  E-value=4.5e-08  Score=96.30  Aligned_cols=118  Identities=15%  Similarity=0.231  Sum_probs=84.1

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---cccccccccccccccc----cccchhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETIEII----PHILDLC  441 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~~~l----~~~~d~i  441 (511)
                      +....+..+||||||+|.+++.+|+.. |+..++|+|++..++.++.+++   +..|+.++++|+....    +..+|.+
T Consensus       118 ~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I  196 (390)
T PRK14121        118 ISKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKI  196 (390)
T ss_pred             hcCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEE
Confidence            455667899999999999999999997 7899999999987777665544   4678899998875432    2445666


Q ss_pred             hhcccCCc------EEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhc
Q psy7829         442 YLNLHRGA------KVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANI  492 (511)
Q Consensus       442 ~~~l~~~~------~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~  492 (511)
                      +.+.+..|      +++     .-.+...+++.|+|||.+...   ....+.+.+.+.+.
T Consensus       197 ~lnFPdPW~KkrHRRlv-----~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~  251 (390)
T PRK14121        197 FVHFPVPWDKKPHRRVI-----SEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKL  251 (390)
T ss_pred             EEeCCCCccccchhhcc-----HHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhC
Confidence            55543322      121     235677888999999998875   55555555555444

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.73  E-value=6.6e-08  Score=99.38  Aligned_cols=99  Identities=20%  Similarity=0.224  Sum_probs=72.6

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---ccccccccccccccccc---ccchhhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETIEIIP---HILDLCY  442 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~~~l~---~~~d~i~  442 (511)
                      +.+.++++|||+|||+|..++.+++..+++++|+++|+++++++.+++|+   +..+++++.+|.....+   ..+|.  
T Consensus       246 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~--  323 (444)
T PRK14902        246 LDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDK--  323 (444)
T ss_pred             hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCE--
Confidence            56788999999999999999999998866799999999988877666554   45668888888655321   22333  


Q ss_pred             hcccCCcEEEEEcC-CccH-------------------------HHHHHHHHhCCCcEEE
Q psy7829         443 LNLHRGAKVLEIGS-GSGY-------------------------LATLMAHLVGPTGHVT  476 (511)
Q Consensus       443 ~~l~~~~~vLD~~~-g~g~-------------------------~~~~l~~~l~~~g~v~  476 (511)
                             .++|..| |.|.                         +.....+.++|||.++
T Consensus       324 -------Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lv  376 (444)
T PRK14902        324 -------ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILV  376 (444)
T ss_pred             -------EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence                   4455544 4442                         3445567789999987

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.71  E-value=1.1e-07  Score=94.87  Aligned_cols=111  Identities=20%  Similarity=0.189  Sum_probs=84.2

Q ss_pred             HHHHHHHHHhhcCC-CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc
Q psy7829         119 QIADAAENLKLHLV-DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD  197 (511)
Q Consensus       119 ~~~~~~~~l~~~~~-~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  197 (511)
                      +...+++.+.  .. ++.+|||++||+|..++.++...+ ..+|+++|+++.+++.+++|++.++     .++++++++|
T Consensus        44 l~~~v~~~~~--~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~-----~~~~~v~~~D  115 (382)
T PRK04338         44 ISVLVLRAFG--PKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNG-----LENEKVFNKD  115 (382)
T ss_pred             HHHHHHHHHH--hhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhC-----CCceEEEhhh
Confidence            4444455443  22 356899999999999999998763 4579999999999999999998875     4567899999


Q ss_pred             CCCCCCCCCCccEEEecCCCC--chHHHHHhhcccCcEEEEE
Q psy7829         198 AREGYLPEAPYDVIYYGGCVS--EVPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       198 ~~~~~~~~~~fD~I~~~~~~~--~~~~~~~~~LkpgG~l~~~  237 (511)
                      +.........||+|++++.-.  .+.+.+.+.+++||.++++
T Consensus       116 a~~~l~~~~~fD~V~lDP~Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        116 ANALLHEERKFDVVDIDPFGSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             HHHHHhhcCCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEE
Confidence            865332135799999986422  3345667789999999997

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.71  E-value=9.7e-08  Score=90.04  Aligned_cols=91  Identities=26%  Similarity=0.358  Sum_probs=75.1

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ..+..+|+|||+|+|.++..+++++ |+.+++..|. |+.++.+++  .         ++|+++.+|+.+.++  . +|+
T Consensus        98 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~--~---------~rv~~~~gd~f~~~P--~-~D~  161 (241)
T PF00891_consen   98 FSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE--A---------DRVEFVPGDFFDPLP--V-ADV  161 (241)
T ss_dssp             TTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH--T---------TTEEEEES-TTTCCS--S-ESE
T ss_pred             ccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc--c---------cccccccccHHhhhc--c-ccc
Confidence            4566789999999999999999998 8999999999 889988887  1         279999999985443  3 999


Q ss_pred             EEecCCCCc--------hHHHHHhhcccC--cEEEEE
Q psy7829         211 IYYGGCVSE--------VPSRVLNQLKKG--GRILAP  237 (511)
Q Consensus       211 I~~~~~~~~--------~~~~~~~~Lkpg--G~l~~~  237 (511)
                      ++....+|.        +++++++.|+||  |+|++.
T Consensus       162 ~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~  198 (241)
T PF00891_consen  162 YLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLII  198 (241)
T ss_dssp             EEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred             eeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence            999998865        358899999999  999984

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.71  E-value=9e-08  Score=84.16  Aligned_cols=105  Identities=20%  Similarity=0.320  Sum_probs=79.6

Q ss_pred             HHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccccccccc-ccchh
Q psy7829         362 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIP-HILDL  440 (511)
Q Consensus       362 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l~-~~~d~  440 (511)
                      .++..  ..+.+..+|.|+|||+|..|..|+++. |...++|||-|.+|+.+|++++  +++.|..+|...+-+ ...+.
T Consensus        21 dLla~--Vp~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rl--p~~~f~~aDl~~w~p~~~~dl   95 (257)
T COG4106          21 DLLAR--VPLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRL--PDATFEEADLRTWKPEQPTDL   95 (257)
T ss_pred             HHHhh--CCccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhC--CCCceecccHhhcCCCCccch
Confidence            44444  788899999999999999999999999 8899999999999999996654  568888888766654 24555


Q ss_pred             hhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEE
Q psy7829         441 CYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVT  476 (511)
Q Consensus       441 i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~  476 (511)
                      ++.|-     ++.+-...+.+...+...|.|||.+-
T Consensus        96 lfaNA-----vlqWlpdH~~ll~rL~~~L~Pgg~LA  126 (257)
T COG4106          96 LFANA-----VLQWLPDHPELLPRLVSQLAPGGVLA  126 (257)
T ss_pred             hhhhh-----hhhhccccHHHHHHHHHhhCCCceEE
Confidence            55542     33344445566677788888976553

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.70  E-value=8.7e-08  Score=97.92  Aligned_cols=104  Identities=13%  Similarity=0.073  Sum_probs=72.1

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccc--cc--ccccccccccccchhhhhc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHI--DL--IANETIEIIPHILDLCYLN  444 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v--~~--i~~d~~~~l~~~~d~i~~~  444 (511)
                      +.+.+|++|||+|||+|+.|..+++.++ +++|+++|+++++++.+.+|+...++  .+  +.+|......     ....
T Consensus       234 L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~-----~~~~  307 (426)
T TIGR00563       234 LAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ-----WAEN  307 (426)
T ss_pred             hCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc-----cccc
Confidence            6778999999999999999999999884 68999999999988887777653332  22  4444322110     0011


Q ss_pred             ccCCcEEEEEcC-CccH-------------------------HHHHHHHHhCCCcEEEEh
Q psy7829         445 LHRGAKVLEIGS-GSGY-------------------------LATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       445 l~~~~~vLD~~~-g~g~-------------------------~~~~l~~~l~~~g~v~~~  478 (511)
                      -..+..++|..| |.|.                         +....++.++|||.++-.
T Consensus       308 ~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvys  367 (426)
T TIGR00563       308 EQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYA  367 (426)
T ss_pred             cccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            234556778766 6665                         344566778999998744

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.70  E-value=2.8e-08  Score=92.56  Aligned_cols=108  Identities=16%  Similarity=0.282  Sum_probs=76.6

Q ss_pred             HHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----cccccccccccccccc
Q psy7829         360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETIEIIP  435 (511)
Q Consensus       360 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~~~l~  435 (511)
                      ...++.. .+......+||||||++||.|+++|+.++++++|+++|++++.++.|++++.    .++|+++.+++.+.++
T Consensus        67 ~g~lL~~-l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~  145 (247)
T PLN02589         67 EGQFLNM-LLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLD  145 (247)
T ss_pred             HHHHHHH-HHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHH
Confidence            3354544 2556678899999999999999999988778999999999888887776664    3568899998877765


Q ss_pred             c---------cchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEE
Q psy7829         436 H---------ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVT  476 (511)
Q Consensus       436 ~---------~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~  476 (511)
                      .         .||.+|.+-.+....        .....+.+.++|||-|+
T Consensus       146 ~l~~~~~~~~~fD~iFiDadK~~Y~--------~y~~~~l~ll~~GGviv  187 (247)
T PLN02589        146 QMIEDGKYHGTFDFIFVDADKDNYI--------NYHKRLIDLVKVGGVIG  187 (247)
T ss_pred             HHHhccccCCcccEEEecCCHHHhH--------HHHHHHHHhcCCCeEEE
Confidence            4         455555544333221        12234457788876654

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.70  E-value=9.9e-08  Score=94.13  Aligned_cols=120  Identities=12%  Similarity=0.140  Sum_probs=84.0

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANET  430 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~  430 (511)
                      +..+.....++.+  ..++++++|||.|||+|.+++.++...   .+++|+|+++.+++.+++|+.   ..+++++.+|.
T Consensus       165 ~l~~~la~~~~~l--~~~~~g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~  239 (329)
T TIGR01177       165 SMDPKLARAMVNL--ARVTEGDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDA  239 (329)
T ss_pred             CCCHHHHHHHHHH--hCCCCcCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecch
Confidence            4566777777776  677899999999999999998877643   799999999999887776654   45577777876


Q ss_pred             cccc--cccchhhhhcccCCcEEEEEcCC----ccHHHHHHHHHhCCCcEEEEh
Q psy7829         431 IEII--PHILDLCYLNLHRGAKVLEIGSG----SGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       431 ~~~l--~~~~d~i~~~l~~~~~vLD~~~g----~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ....  ...+|.++.+.+-+.+...-+-.    ...+...+.+.|+|+|+++.+
T Consensus       240 ~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~  293 (329)
T TIGR01177       240 TKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA  293 (329)
T ss_pred             hcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence            5432  24567777665544432211110    123455667889999988766

This family is found exclusively in the Archaea.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.69  E-value=7.4e-08  Score=98.94  Aligned_cols=71  Identities=20%  Similarity=0.305  Sum_probs=56.5

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccccccc
Q psy7829         358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEI  433 (511)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~  433 (511)
                      ..+..++..  +.+.++.+|||+|||+|.+++.+|+..   .+|+|+|+++++++.+++|..   ..|++++.+|..+.
T Consensus       284 ~l~~~vl~~--l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~  357 (443)
T PRK13168        284 KMVARALEW--LDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEED  357 (443)
T ss_pred             HHHHHHHHH--hcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHh
Confidence            444445554  566788999999999999999999876   799999999999988887764   45688888886543

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.68  E-value=1.4e-07  Score=81.72  Aligned_cols=132  Identities=18%  Similarity=0.179  Sum_probs=86.3

Q ss_pred             CCCCHHHHHHHHHHhhc-CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc--cccccccccc
Q psy7829         353 GPSSERSIAHILDLCYL-NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS--TNHIDLIANE  429 (511)
Q Consensus       353 ~~~~~~~~~~~~~~~~~-~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~--~~~v~~i~~d  429 (511)
                      .++.+..++.++..+.+ ..-.|.+|+|+|||||.+++..+... + ..|+++|++++.++.+++|.+  ..+++++.+|
T Consensus        24 Y~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lG-a-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~d  101 (198)
T COG2263          24 YRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLG-A-SRVLAVDIDPEALEIARANAEELLGDVEFVVAD  101 (198)
T ss_pred             cCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcC-C-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcc
Confidence            35566777787777533 33368899999999999999987554 5 899999999999988888776  4457888887


Q ss_pred             ccccccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh--HHHHHHHHHHHHhcC
Q psy7829         430 TIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL--EHMMDIAIESIANIS  493 (511)
Q Consensus       430 ~~~~l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~--~~ml~~a~~~~~~~~  493 (511)
                      ..+ ....++.+.+|.+-|...-    +  .-...+.+.+.-+-.|+.+  ....+..++.++..|
T Consensus       102 v~~-~~~~~dtvimNPPFG~~~r----h--aDr~Fl~~Ale~s~vVYsiH~a~~~~f~~~~~~~~G  160 (198)
T COG2263         102 VSD-FRGKFDTVIMNPPFGSQRR----H--ADRPFLLKALEISDVVYSIHKAGSRDFVEKFAADLG  160 (198)
T ss_pred             hhh-cCCccceEEECCCCccccc----c--CCHHHHHHHHHhhheEEEeeccccHHHHHHHHHhcC
Confidence            544 4445566677766665421    1  1112333333333456666  334445555566655

>PRK04457 spermidine synthase; Provisional

Probab=98.68  E-value=1.5e-07  Score=89.29  Aligned_cols=106  Identities=17%  Similarity=0.238  Sum_probs=77.1

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----ccccccccccccccc---ccchhhhh
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETIEIIP---HILDLCYL  443 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~~l~---~~~d~i~~  443 (511)
                      .+++.+|||||||+|.++..+++.. |..+|+++|+++++++.+++++..    ++++++.+|+.+.+.   ..+|.++.
T Consensus        64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~  142 (262)
T PRK04457         64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV  142 (262)
T ss_pred             CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence            4567899999999999999999887 778999999999999999988763    568888888766543   34566555


Q ss_pred             cccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       444 ~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +...+..+.. ..-+-.+...+.+.|+|+|.++..
T Consensus       143 D~~~~~~~~~-~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457        143 DGFDGEGIID-ALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             eCCCCCCCcc-ccCcHHHHHHHHHhcCCCcEEEEE
Confidence            4322211110 111345667778889999998763

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.68  E-value=4.9e-08  Score=92.82  Aligned_cols=108  Identities=19%  Similarity=0.275  Sum_probs=72.3

Q ss_pred             HHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----ccccccccccccc--
Q psy7829         360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETIEI--  433 (511)
Q Consensus       360 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~~--  433 (511)
                      ...++..  +. .++.+|||+|||+|.++..+++..   .+|+++|+++++++.++++...    .++++++++..+.  
T Consensus        34 ~~~~l~~--l~-~~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~  107 (255)
T PRK11036         34 LDRLLAE--LP-PRPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ  107 (255)
T ss_pred             HHHHHHh--cC-CCCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh
Confidence            3344444  33 567899999999999999999764   7999999999999988777652    4577777765442  


Q ss_pred             -ccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         434 -IPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       434 -l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                       .+..+|.++...     ++..-..+-.+...+.+.|+|+|.++.+
T Consensus       108 ~~~~~fD~V~~~~-----vl~~~~~~~~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036        108 HLETPVDLILFHA-----VLEWVADPKSVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             hcCCCCCEEEehh-----HHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence             223344443211     1111122334566788899999998754

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.67  E-value=1.7e-07  Score=91.32  Aligned_cols=105  Identities=21%  Similarity=0.218  Sum_probs=73.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCc----C-CCCCeEEEEccCCC-----CC
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDL----L-DSGRVRIVEADARE-----GY  202 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~----~-~~~~v~~~~~d~~~-----~~  202 (511)
                      ++.+|||+|||-|.-..-....  .-..++|+|++...++.|+++........    . ..-...|+.+|...     .+
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~  139 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL  139 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred             CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence            7889999999999877777665  35689999999999999999983311000    0 01135788888763     12


Q ss_pred             CC-CCCccEEEecCCCCch----------HHHHHhhcccCcEEEEEEc
Q psy7829         203 LP-EAPYDVIYYGGCVSEV----------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       203 ~~-~~~fD~I~~~~~~~~~----------~~~~~~~LkpgG~l~~~~~  239 (511)
                      .+ ...||+|-|..++|..          +.++.+.|+|||+++..+.
T Consensus       140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~  187 (331)
T PF03291_consen  140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP  187 (331)
T ss_dssp             SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            22 2589999999888654          4789999999999998765

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK08317 hypothetical protein; Provisional

Probab=98.67  E-value=1.4e-07  Score=88.95  Aligned_cols=111  Identities=22%  Similarity=0.331  Sum_probs=76.2

Q ss_pred             HHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc--cccccccccccccc--ccc
Q psy7829         360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI--STNHIDLIANETIE--IIP  435 (511)
Q Consensus       360 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~--~~~~v~~i~~d~~~--~l~  435 (511)
                      ...++..  +.+.++.+|||+|||+|..+..++..+++.++++++|++++++..++++.  ...++.++..|...  ..+
T Consensus         8 ~~~~~~~--~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~   85 (241)
T PRK08317          8 RARTFEL--LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPD   85 (241)
T ss_pred             HHHHHHH--cCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCC
Confidence            3445555  77889999999999999999999998867789999999999888877762  24556776665432  122


Q ss_pred             ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829         436 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       436 ~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~  477 (511)
                      ..+|.+....     ++.....+..+...+.+.++|+|.++.
T Consensus        86 ~~~D~v~~~~-----~~~~~~~~~~~l~~~~~~L~~gG~l~~  122 (241)
T PRK08317         86 GSFDAVRSDR-----VLQHLEDPARALAEIARVLRPGGRVVV  122 (241)
T ss_pred             CCceEEEEec-----hhhccCCHHHHHHHHHHHhcCCcEEEE
Confidence            3344433221     111223445566778888899988764

>KOG1661|consensus

Probab=98.66  E-value=8.5e-08  Score=83.92  Aligned_cols=114  Identities=25%  Similarity=0.382  Sum_probs=79.7

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcE-EEEEcCCHHHHHHHHhhccccc------------
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGH-VTGLEHMMDIAIESIANISTNH------------  422 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~id~~~~~~~~~~~~~~~~~------------  422 (511)
                      .|..-+.+++.+.-.+.||.+.||+|+||||++..++..+++++. ++|||..++.++.+.+|+....            
T Consensus        65 Ap~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~  144 (237)
T KOG1661|consen   65 APHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRG  144 (237)
T ss_pred             chHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccC
Confidence            445556667762234899999999999999999999987766555 4999999999998888876321            


Q ss_pred             -cccccccccccccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         423 -IDLIANETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       423 -v~~i~~d~~~~l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                       +.++.+|.....        ....+-.+|- +|++.-.+...+...|+++|+++.-
T Consensus       145 ~l~ivvGDgr~g~--------~e~a~YDaIh-vGAaa~~~pq~l~dqL~~gGrllip  192 (237)
T KOG1661|consen  145 ELSIVVGDGRKGY--------AEQAPYDAIH-VGAAASELPQELLDQLKPGGRLLIP  192 (237)
T ss_pred             ceEEEeCCccccC--------CccCCcceEE-EccCccccHHHHHHhhccCCeEEEe
Confidence             223333332222        1222333343 7777777888999999999998754

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.66  E-value=3e-08  Score=89.49  Aligned_cols=99  Identities=21%  Similarity=0.244  Sum_probs=70.4

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccc--ccccccccccc--ccchhhhhcccC
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHID--LIANETIEIIP--HILDLCYLNLHR  447 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~--~i~~d~~~~l~--~~~d~i~~~l~~  447 (511)
                      -+|.+|||+|||-|.++..+|+..   ..|+|+|++++.++.++.....+.+.  ..+....+...  ..||.+..    
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~c----  130 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTC----  130 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEE----
Confidence            379999999999999999999775   89999999999998887665544433  44443333322  24554332    


Q ss_pred             CcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         448 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       448 ~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                       ..||+--..+..+....++.++|+|.+..-
T Consensus       131 -mEVlEHv~dp~~~~~~c~~lvkP~G~lf~S  160 (243)
T COG2227         131 -MEVLEHVPDPESFLRACAKLVKPGGILFLS  160 (243)
T ss_pred             -hhHHHccCCHHHHHHHHHHHcCCCcEEEEe
Confidence             234444456667778889999999988755

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.66  E-value=5.1e-08  Score=92.46  Aligned_cols=103  Identities=23%  Similarity=0.247  Sum_probs=77.0

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC---CCCCc
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL---PEAPY  208 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~f  208 (511)
                      ..+.+|||+.|=+|.++...+...  ..+|+.+|.|..+++.+++|+..|+   +...+++|++.|+.+.+.   ..++|
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg---~~~~~~~~~~~Dvf~~l~~~~~~~~f  196 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNG---LDLDRHRFIQGDVFKFLKRLKKGGRF  196 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT----CCTCEEEEES-HHHHHHHHHHTT-E
T ss_pred             cCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcC---CCccceEEEecCHHHHHHHHhcCCCC
Confidence            358899999999999999877643  4579999999999999999999987   345689999999875321   24689


Q ss_pred             cEEEecCCC------------CchHHHHHhhcccCcEEEEEEc
Q psy7829         209 DVIYYGGCV------------SEVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       209 D~I~~~~~~------------~~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      |+|++++|.            ..+...+.++|+|||.|++...
T Consensus       197 D~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc  239 (286)
T PF10672_consen  197 DLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC  239 (286)
T ss_dssp             EEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred             CEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            999999886            2234678899999999887543

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.64  E-value=1.3e-07  Score=86.64  Aligned_cols=100  Identities=11%  Similarity=0.203  Sum_probs=65.1

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccccccc----------ccccchh
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEI----------IPHILDL  440 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~----------l~~~~d~  440 (511)
                      ++++.+|||+|||+|..+..+++..++.++|++||+++.        ...++++++++|....          .+..+|.
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~--------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~  120 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM--------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQV  120 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc--------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCE
Confidence            578999999999999999999999877789999999871        1235678888875432          1233555


Q ss_pred             hhhcccCCc---EEEEEcCC---ccHHHHHHHHHhCCCcEEEEh
Q psy7829         441 CYLNLHRGA---KVLEIGSG---SGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       441 i~~~l~~~~---~vLD~~~g---~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +..+..+..   ...|...-   .-.+...+.+.|+|||.++..
T Consensus       121 V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~  164 (209)
T PRK11188        121 VMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK  164 (209)
T ss_pred             EecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            554432221   00010000   012345667889999998874

>PLN02823 spermine synthase

Probab=98.64  E-value=2.6e-07  Score=90.24  Aligned_cols=105  Identities=18%  Similarity=0.248  Sum_probs=80.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCccEE
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYDVI  211 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I  211 (511)
                      ...+||.||+|.|..+..+.+.. +..+|+.+|+++.+++.|++.+...+.. +..++++++.+|+..... ..++||+|
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~-~~dprv~v~~~Da~~~L~~~~~~yDvI  180 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREA-FCDKRLELIINDARAELEKRDEKFDVI  180 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhccccccc-ccCCceEEEEChhHHHHhhCCCCccEE
Confidence            46789999999999999888764 4568999999999999999997653211 245789999999875332 23689999


Q ss_pred             EecCCCC------------chHH-HHHhhcccCcEEEEEEc
Q psy7829         212 YYGGCVS------------EVPS-RVLNQLKKGGRILAPIG  239 (511)
Q Consensus       212 ~~~~~~~------------~~~~-~~~~~LkpgG~l~~~~~  239 (511)
                      +++..-+            .+.+ .+.+.|+|||.+++...
T Consensus       181 i~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~  221 (336)
T PLN02823        181 IGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG  221 (336)
T ss_pred             EecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence            9984221            1335 78899999999987543

>TIGR00740 methyltransferase, putative

Probab=98.64  E-value=1.2e-07  Score=89.21  Aligned_cols=103  Identities=14%  Similarity=0.201  Sum_probs=69.1

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHh-CCCcEEEEEcCCHHHHHHHHhhccc----cccccccccccccccccchhhhhc
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLV-GPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETIEIIPHILDLCYLN  444 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~-~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~~l~~~~d~i~~~  444 (511)
                      .+.++.+|||+|||+|..+..+++.+ .|+.+++++|+++++++.+++++..    .+++++++|........++.+...
T Consensus        50 ~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~  129 (239)
T TIGR00740        50 FVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILN  129 (239)
T ss_pred             hCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeee
Confidence            34678899999999999999999875 3678999999999999888776542    356777776544321122221111


Q ss_pred             ccCCcEEEEEcCC---ccHHHHHHHHHhCCCcEEEEh
Q psy7829         445 LHRGAKVLEIGSG---SGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       445 l~~~~~vLD~~~g---~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .     ++.. +.   ...+...+.+.|+|+|.++..
T Consensus       130 ~-----~l~~-~~~~~~~~~l~~i~~~LkpgG~l~i~  160 (239)
T TIGR00740       130 F-----TLQF-LPPEDRIALLTKIYEGLNPNGVLVLS  160 (239)
T ss_pred             c-----chhh-CCHHHHHHHHHHHHHhcCCCeEEEEe
Confidence            0     0000 11   134456778889999988766

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.64  E-value=5.6e-08  Score=86.70  Aligned_cols=118  Identities=21%  Similarity=0.196  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc
Q psy7829         118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD  197 (511)
Q Consensus       118 ~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  197 (511)
                      .+...+.+.|....-++.+|||+.||||.+++..+.+.  ..+|+.+|.++.++...++|++..+    ..++++++..|
T Consensus        27 rvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~----~~~~~~v~~~d  100 (183)
T PF03602_consen   27 RVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLG----LEDKIRVIKGD  100 (183)
T ss_dssp             HHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-----GGGEEEEESS
T ss_pred             HHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhC----CCcceeeeccC
Confidence            35555666666321378999999999999999888775  4589999999999999999999865    23368999999


Q ss_pred             CCCCC----CCCCCccEEEecCCCCch------HHHHH--hhcccCcEEEEEEccC
Q psy7829         198 AREGY----LPEAPYDVIYYGGCVSEV------PSRVL--NQLKKGGRILAPIGPM  241 (511)
Q Consensus       198 ~~~~~----~~~~~fD~I~~~~~~~~~------~~~~~--~~LkpgG~l~~~~~~~  241 (511)
                      ....+    ....+||+|++++|+..-      +..+.  .+|+++|.+++.....
T Consensus       101 ~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  101 AFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             HHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             HHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            65322    124789999999998642      23343  6889999999987654

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.63  E-value=4.3e-07  Score=87.55  Aligned_cols=144  Identities=19%  Similarity=0.249  Sum_probs=91.6

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANET  430 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~  430 (511)
                      +.+...+..++..  ....++.+|||+|||+|..++.+++.. ++.+|+++|+++.+++.+.+|..   ..++.++.+|.
T Consensus        91 ~~te~l~~~~~~~--~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~  167 (275)
T PRK09328         91 PETEELVEWALEA--LLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW  167 (275)
T ss_pred             CCcHHHHHHHHHh--ccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc
Confidence            5666777666544  455678899999999999999999887 67899999999998888887754   45678887776


Q ss_pred             ccccc-ccchhhhhcccCCcE---------E------EEEcCCcc------HHHHHHHHHhCCCcEEEEh--HHHHHHHH
Q psy7829         431 IEIIP-HILDLCYLNLHRGAK---------V------LEIGSGSG------YLATLMAHLVGPTGHVTGL--EHMMDIAI  486 (511)
Q Consensus       431 ~~~l~-~~~d~i~~~l~~~~~---------v------LD~~~g~g------~~~~~l~~~l~~~g~v~~~--~~ml~~a~  486 (511)
                      .+..+ ..+|.++.+.+-...         +      ..+..|..      .+...+.+.|+|+|.++..  ..-.+..+
T Consensus       168 ~~~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~  247 (275)
T PRK09328        168 FEPLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVR  247 (275)
T ss_pred             cCcCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHH
Confidence            54332 456766655331110         0      00111111      1233445788999988755  22223344


Q ss_pred             HHHHhcCCCceEEE
Q psy7829         487 ESIANISTNHIDLI  500 (511)
Q Consensus       487 ~~~~~~~~~~i~~i  500 (511)
                      +.+.+.|+.++++.
T Consensus       248 ~~l~~~gf~~v~~~  261 (275)
T PRK09328        248 ALLAAAGFADVETR  261 (275)
T ss_pred             HHHHhCCCceeEEe
Confidence            45555666555554

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.63  E-value=2.3e-07  Score=94.85  Aligned_cols=102  Identities=16%  Similarity=0.207  Sum_probs=71.4

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc--ccccccccccccccccchhhhhccc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN--HIDLIANETIEIIPHILDLCYLNLH  446 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~--~v~~i~~d~~~~l~~~~d~i~~~l~  446 (511)
                      +.+.+|++|||+|||+|..++.+++.. ++++|+++|+++++++.+++|+...  ++.++++|..+... .    ...-.
T Consensus       240 l~~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~-~----~~~~~  313 (427)
T PRK10901        240 LAPQNGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQ-W----WDGQP  313 (427)
T ss_pred             cCCCCCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchh-h----cccCC
Confidence            677899999999999999999999887 4479999999999888877776532  25666776543211 0    00112


Q ss_pred             CCcEEEEEcC-CccH-------------------------HHHHHHHHhCCCcEEE
Q psy7829         447 RGAKVLEIGS-GSGY-------------------------LATLMAHLVGPTGHVT  476 (511)
Q Consensus       447 ~~~~vLD~~~-g~g~-------------------------~~~~l~~~l~~~g~v~  476 (511)
                      .+..++|..| |.|.                         +.....+.|+|||+++
T Consensus       314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lv  369 (427)
T PRK10901        314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLL  369 (427)
T ss_pred             CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence            3445566666 3442                         3445667789999987

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.62  E-value=1.9e-07  Score=91.07  Aligned_cols=115  Identities=15%  Similarity=0.144  Sum_probs=77.0

Q ss_pred             CHHHHHHHHHHhhcCC-CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccccccc-
Q psy7829         356 SERSIAHILDLCYLNL-HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEI-  433 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~-  433 (511)
                      +......++..  +.+ .++.+|||||||+|.++..+++.. +..+|+++|.++++++.++++....+++++.+|..+. 
T Consensus        97 ~e~~r~~~l~~--~~l~~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp  173 (340)
T PLN02490         97 TEDMRDDALEP--ADLSDRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLP  173 (340)
T ss_pred             hHHHHHHHHhh--cccCCCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCC
Confidence            33444444554  333 467899999999999999999887 4479999999999999998887767788887775432 


Q ss_pred             -ccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         434 -IPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       434 -l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                       .+..+|.++...     ++......-.....+.+.|+|+|.++.+
T Consensus       174 ~~~~sFDvVIs~~-----~L~~~~d~~~~L~e~~rvLkPGG~LvIi  214 (340)
T PLN02490        174 FPTDYADRYVSAG-----SIEYWPDPQRGIKEAYRVLKIGGKACLI  214 (340)
T ss_pred             CCCCceeEEEEcC-----hhhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence             123345443321     0100112233457788889999997654

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.62  E-value=3.3e-07  Score=87.08  Aligned_cols=143  Identities=17%  Similarity=0.207  Sum_probs=90.7

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANET  430 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~  430 (511)
                      +.+...+..++..  +. ..+.+|||+|||+|.++..+++.. ++.+++++|+++.+++.+.++..   ..+++++.+|.
T Consensus        71 ~~~~~l~~~~l~~--~~-~~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~  146 (251)
T TIGR03534        71 PDTEELVEAALER--LK-KGPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDW  146 (251)
T ss_pred             CChHHHHHHHHHh--cc-cCCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch
Confidence            5566666666654  32 345699999999999999999886 56899999999988887776654   44678888876


Q ss_pred             cccc-cccchhhhhcccCCcE---------EEE------EcCCcc------HHHHHHHHHhCCCcEEEEh--HHHHHHHH
Q psy7829         431 IEII-PHILDLCYLNLHRGAK---------VLE------IGSGSG------YLATLMAHLVGPTGHVTGL--EHMMDIAI  486 (511)
Q Consensus       431 ~~~l-~~~~d~i~~~l~~~~~---------vLD------~~~g~g------~~~~~l~~~l~~~g~v~~~--~~ml~~a~  486 (511)
                      .+.. ...+|.++.+.+....         +.+      +-.|..      .+...+.+.|+|+|.++..  ....+..+
T Consensus       147 ~~~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~  226 (251)
T TIGR03534       147 FEPLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVR  226 (251)
T ss_pred             hccCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHH
Confidence            5543 3456766655432110         000      000111      2234566778999988765  22334445


Q ss_pred             HHHHhcCCCceEEE
Q psy7829         487 ESIANISTNHIDLI  500 (511)
Q Consensus       487 ~~~~~~~~~~i~~i  500 (511)
                      +.+.+.|+..+++.
T Consensus       227 ~~l~~~gf~~v~~~  240 (251)
T TIGR03534       227 ALFEAAGFADVETR  240 (251)
T ss_pred             HHHHhCCCCceEEE
Confidence            55666677556554

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.62  E-value=2.4e-07  Score=89.10  Aligned_cols=138  Identities=18%  Similarity=0.211  Sum_probs=86.8

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c-ccccccccc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T-NHIDLIANE  429 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~-~~v~~i~~d  429 (511)
                      |.+...+...+.. .+...++.+|||+|||+|.+++.+++.. ++.+|+++|+++++++.+++|..   . ++++++++|
T Consensus       103 ~~te~lv~~~l~~-~~~~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D  180 (284)
T TIGR03533       103 SPIAELIEDGFAP-WLEPEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSD  180 (284)
T ss_pred             CchHHHHHHHHHH-HhccCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECc
Confidence            3455555554432 1223456799999999999999999887 66899999999988887777654   2 357888888


Q ss_pred             ccccccc-cchhhhhcccCCc----------------EEEEEcCCcc-----HHHHHHHHHhCCCcEEEEh-HHHHHHHH
Q psy7829         430 TIEIIPH-ILDLCYLNLHRGA----------------KVLEIGSGSG-----YLATLMAHLVGPTGHVTGL-EHMMDIAI  486 (511)
Q Consensus       430 ~~~~l~~-~~d~i~~~l~~~~----------------~vLD~~~g~g-----~~~~~l~~~l~~~g~v~~~-~~ml~~a~  486 (511)
                      ..+.++. .+|.++.|.+...                ..++ |...|     .+...+.+.|+|+|.++.- ..-.+..+
T Consensus       181 ~~~~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~-gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~~~v~  259 (284)
T TIGR03533       181 LFAALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALA-SGEDGLDLVRRILAEAADHLNENGVLVVEVGNSMEALE  259 (284)
T ss_pred             hhhccCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhc-CCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCHHHHH
Confidence            7655543 5788877643211                1111 10111     2344556788999988754 11113455


Q ss_pred             HHHHhcCC
Q psy7829         487 ESIANIST  494 (511)
Q Consensus       487 ~~~~~~~~  494 (511)
                      +.+.+.+.
T Consensus       260 ~~~~~~~~  267 (284)
T TIGR03533       260 EAYPDVPF  267 (284)
T ss_pred             HHHHhCCC
Confidence            55555544

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>KOG1499|consensus

Probab=98.62  E-value=1.2e-07  Score=90.17  Aligned_cols=98  Identities=21%  Similarity=0.212  Sum_probs=76.3

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      +-.+..|||+|||+|.++...|++.  ..+|+++|.|.- .+.|++.+..++    ..+.|+++++.+++.-.+..+.|+
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~i-a~~a~~iv~~N~----~~~ii~vi~gkvEdi~LP~eKVDi  130 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSI-ADFARKIVKDNG----LEDVITVIKGKVEDIELPVEKVDI  130 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHH-HHHHHHHHHhcC----ccceEEEeecceEEEecCccceeE
Confidence            4578999999999999999999986  568999998755 499999998886    345689999988764333578999


Q ss_pred             EEecCCCCchH---------HHHHhhcccCcEEE
Q psy7829         211 IYYGGCVSEVP---------SRVLNQLKKGGRIL  235 (511)
Q Consensus       211 I~~~~~~~~~~---------~~~~~~LkpgG~l~  235 (511)
                      |++..+-..++         -.--++|+|||.++
T Consensus       131 IvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  131 IVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             EeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence            99875543332         22347899999885

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.62  E-value=3.4e-06  Score=74.00  Aligned_cols=117  Identities=21%  Similarity=0.197  Sum_probs=87.8

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      +...+.+.+...--.|.++||+.+|||.+++..+.+.  ..+++.+|.+..++...++|++..+    ...+.+++..|+
T Consensus        29 VREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~----~~~~~~~~~~da  102 (187)
T COG0742          29 VREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALG----LEGEARVLRNDA  102 (187)
T ss_pred             HHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhC----CccceEEEeecH
Confidence            4444555554211368999999999999999988885  4589999999999999999998864    346789999998


Q ss_pred             CCCC---CCCCCccEEEecCCCCc-hH----HH----HHhhcccCcEEEEEEccC
Q psy7829         199 REGY---LPEAPYDVIYYGGCVSE-VP----SR----VLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       199 ~~~~---~~~~~fD~I~~~~~~~~-~~----~~----~~~~LkpgG~l~~~~~~~  241 (511)
                      ....   ...++||+|+.++|++. +.    .-    -..+|+|+|.+++.....
T Consensus       103 ~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         103 LRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             HHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            7321   12235999999999973 22    11    246799999999976543

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.62  E-value=2.6e-07  Score=81.97  Aligned_cols=105  Identities=26%  Similarity=0.378  Sum_probs=69.3

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC----CCCC
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY----LPEA  206 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~  206 (511)
                      ..++.+|||+|||+|..++.++... ...+|+..|.++ .++..+.|++.++.  ....++.+...|..+..    ....
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~--~~~~~v~v~~L~Wg~~~~~~~~~~~  118 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGS--LLDGRVSVRPLDWGDELDSDLLEPH  118 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT----------EEEE--TTS-HHHHHHS-S
T ss_pred             hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccc--cccccccCcEEEecCcccccccccc
Confidence            4578899999999999999999984 456899999988 99999999998641  12457888888875422    1236


Q ss_pred             CccEEEecCCCC------chHHHHHhhcccCcEEEEEEc
Q psy7829         207 PYDVIYYGGCVS------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       207 ~fD~I~~~~~~~------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      +||+|+....+.      .+.+.+.+.|+|+|.+++...
T Consensus       119 ~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~  157 (173)
T PF10294_consen  119 SFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYK  157 (173)
T ss_dssp             SBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred             cCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence            899999887663      234778899999999776543

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.61  E-value=6.9e-08  Score=93.82  Aligned_cols=99  Identities=18%  Similarity=0.263  Sum_probs=68.6

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----cccccccccccccc--cccchhhhhcc
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETIEII--PHILDLCYLNL  445 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~~l--~~~~d~i~~~l  445 (511)
                      .++.+|||||||+|.++..+++..   .+|+|||.++++++.++++...    .++++++++..+..  +..||.++.. 
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~-  205 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSL-  205 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEh-
Confidence            467899999999999999998642   7999999999999988766542    35777777643321  2234444321 


Q ss_pred             cCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         446 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       446 ~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                          .++..-.....+...+.+.|+|+|.++..
T Consensus       206 ----~vLeHv~d~~~~L~~l~r~LkPGG~liis  234 (322)
T PLN02396        206 ----EVIEHVANPAEFCKSLSALTIPNGATVLS  234 (322)
T ss_pred             ----hHHHhcCCHHHHHHHHHHHcCCCcEEEEE
Confidence                12222234556777888889999988754

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.60  E-value=5.5e-08  Score=77.02  Aligned_cols=92  Identities=15%  Similarity=0.260  Sum_probs=63.0

Q ss_pred             EEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccccccc--ccccchhhhhcccCCcEEEEEc
Q psy7829         378 LEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEI--IPHILDLCYLNLHRGAKVLEIG  455 (511)
Q Consensus       378 LdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~--l~~~~d~i~~~l~~~~~vLD~~  455 (511)
                      ||+|||+|..+..+++.  +..+|+++|+++++++.++++....++.++.++....  .+..+|.++....-..     .
T Consensus         1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~-----~   73 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHH-----L   73 (95)
T ss_dssp             EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGG-----S
T ss_pred             CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceee-----c
Confidence            89999999999999987  3489999999999999999988877777776664332  2344554433211111     0


Q ss_pred             CCccHHHHHHHHHhCCCcEEE
Q psy7829         456 SGSGYLATLMAHLVGPTGHVT  476 (511)
Q Consensus       456 ~g~g~~~~~l~~~l~~~g~v~  476 (511)
                      ........++.+.++|+|.++
T Consensus        74 ~~~~~~l~e~~rvLk~gG~l~   94 (95)
T PF08241_consen   74 EDPEAALREIYRVLKPGGRLV   94 (95)
T ss_dssp             SHHHHHHHHHHHHEEEEEEEE
T ss_pred             cCHHHHHHHHHHHcCcCeEEe
Confidence            233445678889999999876

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.60  E-value=2e-07  Score=88.59  Aligned_cols=109  Identities=18%  Similarity=0.242  Sum_probs=69.1

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccccccc--cc
Q psy7829         358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEI--IP  435 (511)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~--l~  435 (511)
                      .....+++.  +...++.+|||+|||+|.++..+++..   .+|+++|+++++++.++++...  ..++.+|....  .+
T Consensus        29 ~~a~~l~~~--l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~~--~~~~~~d~~~~~~~~  101 (251)
T PRK10258         29 QSADALLAM--LPQRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDAA--DHYLAGDIESLPLAT  101 (251)
T ss_pred             HHHHHHHHh--cCccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCCC--CCEEEcCcccCcCCC
Confidence            334444454  455567899999999999999887643   7999999999999988877542  34455553321  12


Q ss_pred             ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         436 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       436 ~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..+|.++.+..     +........+...+.+.++|+|.++..
T Consensus       102 ~~fD~V~s~~~-----l~~~~d~~~~l~~~~~~Lk~gG~l~~~  139 (251)
T PRK10258        102 ATFDLAWSNLA-----VQWCGNLSTALRELYRVVRPGGVVAFT  139 (251)
T ss_pred             CcEEEEEECch-----hhhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence            34555443321     111223344556667777887777644

>KOG1975|consensus

Probab=98.60  E-value=1.6e-07  Score=87.39  Aligned_cols=116  Identities=18%  Similarity=0.173  Sum_probs=82.6

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCc-CCCCCeEEEEcc
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDL-LDSGRVRIVEAD  197 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~v~~~~~d  197 (511)
                      +-..+++..   .+++..++|+|||-|+-.+..-++.  -+.++|+||.+..++.|+++........ -..=.+.|+.+|
T Consensus       106 IKs~LI~~y---~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~D  180 (389)
T KOG1975|consen  106 IKSVLINLY---TKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAAD  180 (389)
T ss_pred             HHHHHHHHH---hccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEec
Confidence            444444444   5788999999999999888777653  4679999999999999999876531000 000136889999


Q ss_pred             CCC-----CCC-CCCCccEEEecCCCCc----------hHHHHHhhcccCcEEEEEEc
Q psy7829         198 ARE-----GYL-PEAPYDVIYYGGCVSE----------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       198 ~~~-----~~~-~~~~fD~I~~~~~~~~----------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      ...     ..+ .+.+||+|-|..++|.          ++.++.+.|||||.++-.++
T Consensus       181 c~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP  238 (389)
T KOG1975|consen  181 CFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP  238 (389)
T ss_pred             cchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence            762     222 2234999988877753          34789999999999988665

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.60  E-value=2.2e-07  Score=93.08  Aligned_cols=106  Identities=20%  Similarity=0.211  Sum_probs=68.3

Q ss_pred             HHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccccccchhh
Q psy7829         362 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIPHILDLC  441 (511)
Q Consensus       362 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l~~~~d~i  441 (511)
                      .++..  +.++++.+|||||||+|.++..+++..+  .+|+++|+++++++.+.++....++++...|..+. +..+|.+
T Consensus       158 ~l~~~--l~l~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l-~~~fD~I  232 (383)
T PRK11705        158 LICRK--LQLKPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL-NGQFDRI  232 (383)
T ss_pred             HHHHH--hCCCCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc-CCCCCEE
Confidence            34444  6788999999999999999999998764  79999999999999988877543455555543321 2334433


Q ss_pred             hhcccCCcEEEE-EcC-CccHHHHHHHHHhCCCcEEEE
Q psy7829         442 YLNLHRGAKVLE-IGS-GSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       442 ~~~l~~~~~vLD-~~~-g~g~~~~~l~~~l~~~g~v~~  477 (511)
                      +...     +++ ++. ....+...+.+.|+|+|.++.
T Consensus       233 vs~~-----~~ehvg~~~~~~~l~~i~r~LkpGG~lvl  265 (383)
T PRK11705        233 VSVG-----MFEHVGPKNYRTYFEVVRRCLKPDGLFLL  265 (383)
T ss_pred             EEeC-----chhhCChHHHHHHHHHHHHHcCCCcEEEE
Confidence            2210     000 000 012344556667777777654

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.59  E-value=2.7e-07  Score=82.96  Aligned_cols=105  Identities=15%  Similarity=0.254  Sum_probs=63.7

Q ss_pred             CCCEEEEEcCCccH----HHHHHHHHh----CCCceEEEEeCCHHHHHHHHHH------------------H-hccCCCc
Q psy7829         133 DGAKVLDLGSGSGY----QTCVFAHMV----GPTGKVIGVEHIPELIEASLRN------------------I-SKGNKDL  185 (511)
Q Consensus       133 ~~~~vLDiG~G~G~----~~~~la~~~----~~~~~v~~iD~~~~~~~~a~~~------------------~-~~~~~~~  185 (511)
                      +..+|+..||++|.    +++.+.+..    +...+++|+|+|+.+++.|++-                  + ...+..+
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            45689999999994    344444422    1146899999999999999841                  1 1111011


Q ss_pred             ----CCCCCeEEEEccCCCCCCCCCCccEEEecCCCC--------chHHHHHhhcccCcEEEEE
Q psy7829         186 ----LDSGRVRIVEADAREGYLPEAPYDVIYYGGCVS--------EVPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       186 ----~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~--------~~~~~~~~~LkpgG~l~~~  237 (511)
                          -...+|+|...|+.+..+..+.||+|+|-+++-        .+.+.+.+.|+|||.|++.
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence                012468999999988444558899999998873        3457889999999999973

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.58  E-value=1.8e-07  Score=89.61  Aligned_cols=73  Identities=25%  Similarity=0.395  Sum_probs=61.8

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEI  433 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~  433 (511)
                      .+..+..++..  +.+.++++|||||||+|.++..+++..   .+|+++|+++++++.+.+++...+++++++|..+.
T Consensus        27 ~~~i~~~i~~~--l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~   99 (272)
T PRK00274         27 DENILDKIVDA--AGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKV   99 (272)
T ss_pred             CHHHHHHHHHh--cCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhccCceEEEEChhhcC
Confidence            44667777776  677899999999999999999999886   59999999999999988877657899999887654

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.58  E-value=5e-07  Score=87.16  Aligned_cols=90  Identities=20%  Similarity=0.312  Sum_probs=66.0

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cc-cccccccc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TN-HIDLIANE  429 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~-~v~~i~~d  429 (511)
                      |.+...+..++... ....+..+|||+|||+|.+++.+++.. ++.+|+++|+++++++.+++|..   .. +++++.+|
T Consensus        96 ~ete~lv~~~l~~~-~~~~~~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d  173 (284)
T TIGR00536        96 PETEELVEKALASL-ISQNPILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSN  173 (284)
T ss_pred             CccHHHHHHHHHHh-hhcCCCCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECc
Confidence            56777777665531 122233799999999999999999887 66899999999888887776654   33 38888888


Q ss_pred             ccccccc-cchhhhhcc
Q psy7829         430 TIEIIPH-ILDLCYLNL  445 (511)
Q Consensus       430 ~~~~l~~-~~d~i~~~l  445 (511)
                      ..+.++. .+|.++.|.
T Consensus       174 ~~~~~~~~~fDlIvsNP  190 (284)
T TIGR00536       174 LFEPLAGQKIDIIVSNP  190 (284)
T ss_pred             hhccCcCCCccEEEECC
Confidence            7665543 577777764

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK14967 putative methyltransferase; Provisional

Probab=98.56  E-value=4.8e-07  Score=84.15  Aligned_cols=124  Identities=19%  Similarity=0.205  Sum_probs=78.2

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc--cccccccccccccc-ccchhhhhcc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN--HIDLIANETIEIIP-HILDLCYLNL  445 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~--~v~~i~~d~~~~l~-~~~d~i~~~l  445 (511)
                      ..+.++++|||+|||+|.+++.+++.. . .+|+++|+++.+++.+++|....  +++++++|..+.++ ..+|.++.+.
T Consensus        32 ~~~~~~~~vLDlGcG~G~~~~~la~~~-~-~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~np  109 (223)
T PRK14967         32 EGLGPGRRVLDLCTGSGALAVAAAAAG-A-GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNP  109 (223)
T ss_pred             cccCCCCeEEEecCCHHHHHHHHHHcC-C-CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECC
Confidence            567788999999999999999998753 2 59999999999888877776533  46677777554433 4577776653


Q ss_pred             cCCcE----E----EE--EcCC-cc-----HHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCC
Q psy7829         446 HRGAK----V----LE--IGSG-SG-----YLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIST  494 (511)
Q Consensus       446 ~~~~~----v----LD--~~~g-~g-----~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~  494 (511)
                      +....    .    .+  +..| .|     .+...+.+.|+|+|.++.+   ..-.....+.++..++
T Consensus       110 Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~  177 (223)
T PRK14967        110 PYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGL  177 (223)
T ss_pred             CCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCC
Confidence            21100    0    00  0011 11     1233456788999999876   1123344555555554

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.56  E-value=5.4e-07  Score=87.52  Aligned_cols=122  Identities=18%  Similarity=0.213  Sum_probs=80.0

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----ccccccccc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANE  429 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d  429 (511)
                      +.+...+...+.. .+...+..+|||+|||+|.+++.+++.. |+.+|+++|+++++++.+++|...    ++++++++|
T Consensus       115 ~~te~lv~~~l~~-~~~~~~~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D  192 (307)
T PRK11805        115 SPIAELIEDGFAP-WLEDPPVTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESD  192 (307)
T ss_pred             CchHHHHHHHHHH-HhccCCCCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECc
Confidence            4455555544431 1222223789999999999999999886 668999999999888887777652    347888888


Q ss_pred             cccccc-ccchhhhhcccCC----------------cEEEEEcCCcc-----HHHHHHHHHhCCCcEEEEh
Q psy7829         430 TIEIIP-HILDLCYLNLHRG----------------AKVLEIGSGSG-----YLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       430 ~~~~l~-~~~d~i~~~l~~~----------------~~vLD~~~g~g-----~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..+.++ ..+|.++.+.+.-                ...++ |...|     .+...+.+.|+|+|.++.-
T Consensus       193 ~~~~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~-gg~dGl~~~~~i~~~a~~~L~pgG~l~~E  262 (307)
T PRK11805        193 LFAALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALA-AGDDGLDLVRRILAEAPDYLTEDGVLVVE  262 (307)
T ss_pred             hhhhCCCCCccEEEECCCCCCccchhhcCHhhccCccceee-CCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            665554 3578877764321                11221 21112     2345566788999988754

>KOG1122|consensus

Probab=98.55  E-value=3.2e-07  Score=88.69  Aligned_cols=174  Identities=16%  Similarity=0.151  Sum_probs=113.2

Q ss_pred             CCCCCCcccCCCccHHHHHHHHHHcCCCCCH--HHHHH-HHhCCCCCccCC-CCCCCcccccCCCcccchhHHHHHHHHH
Q psy7829          51 PPDNLNHFKNEGTCQTDLVNHLRDIGKIRTE--RVAQA-FYKVDRGNFANE-EPYQDVSASLGYAGVMNAPNQIADAAEN  126 (511)
Q Consensus        51 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~a-~~~~~r~~~~~~-~~y~~~~~~~~~~~~~~~p~~~~~~~~~  126 (511)
                      +++...+.|+.+.-+.++...|...|+..++  .+... +.-.......+. ..|-.+...++...++     .  .+..
T Consensus       164 ~rp~tir~ntlk~~rrd~~~~L~nrgv~~~pl~~ws~vgl~v~~s~vpigat~e~lag~~~LQ~~sS~-----L--pv~a  236 (460)
T KOG1122|consen  164 PRPVTIRTNTLKTRRRDLAVELSNRGVNLDPLGKWSKVGLVVFDSVVPIGATPEYLAGHYMLQNASSF-----L--PVMA  236 (460)
T ss_pred             CCCeeEEecccchhhhhHHHHHHhcccCcccccccccceEEEecCccccCCchhhcccceeeccCccc-----c--eeee
Confidence            4556677777777777777777777753211  11111 111111111110 1222222222211111     1  1223


Q ss_pred             HhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC--C
Q psy7829         127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL--P  204 (511)
Q Consensus       127 l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~  204 (511)
                      |.  .++|.||||+++.+|.-+.++|..++..+.|++.|.+...+...+.|+.+.     +..|..+...|..+.+.  .
T Consensus       237 L~--Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rl-----Gv~ntiv~n~D~~ef~~~~~  309 (460)
T KOG1122|consen  237 LD--PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRL-----GVTNTIVSNYDGREFPEKEF  309 (460)
T ss_pred             cC--CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHh-----CCCceEEEccCccccccccc
Confidence            33  789999999999999999999999988999999999999999999999996     46777788888764321  1


Q ss_pred             CCCccEEEecCCCCc----------------------------hHHHHHhhcccCcEEEEEE
Q psy7829         205 EAPYDVIYYGGCVSE----------------------------VPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       205 ~~~fD~I~~~~~~~~----------------------------~~~~~~~~LkpgG~l~~~~  238 (511)
                      .++||.|+.+++|..                            ++..+.+.+++||+||.+.
T Consensus       310 ~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST  371 (460)
T KOG1122|consen  310 PGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST  371 (460)
T ss_pred             CcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence            248999999998832                            1245678999999999863

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.55  E-value=2.1e-07  Score=88.49  Aligned_cols=86  Identities=21%  Similarity=0.278  Sum_probs=67.7

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-ccccccccccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNHIDLIANETIEII  434 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~~l  434 (511)
                      .+..+.+++..  +.+.++++|||||||+|.+|..+++..   .+|+++|+++.+++.+.+++. ..+++++++|..+..
T Consensus        14 d~~~~~~iv~~--~~~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~   88 (258)
T PRK14896         14 DDRVVDRIVEY--AEDTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVD   88 (258)
T ss_pred             CHHHHHHHHHh--cCCCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCC
Confidence            34667777776  677889999999999999999999874   799999999999998888765 467999999876643


Q ss_pred             cccchhhhhccc
Q psy7829         435 PHILDLCYLNLH  446 (511)
Q Consensus       435 ~~~~d~i~~~l~  446 (511)
                      ...++.++.|++
T Consensus        89 ~~~~d~Vv~NlP  100 (258)
T PRK14896         89 LPEFNKVVSNLP  100 (258)
T ss_pred             chhceEEEEcCC
Confidence            233455555544

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.55  E-value=4.1e-07  Score=92.73  Aligned_cols=101  Identities=18%  Similarity=0.207  Sum_probs=75.0

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHH---HHhhccccccccccccccccccccchhhhhccc
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE---SIANISTNHIDLIANETIEIIPHILDLCYLNLH  446 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~---~~~~~~~~~v~~i~~d~~~~l~~~~d~i~~~l~  446 (511)
                      ..++|++|||++||+|.-|..+|..++..+.|+++|++...++.   +.++++..|+.+.+.|....... +.     -.
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~-~~-----~~  183 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAA-LP-----ET  183 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhh-ch-----hh
Confidence            67899999999999999999999999777999999999766664   55566678888877775432111 10     12


Q ss_pred             CCcEEEEEcC-CccHH-------------------------HHHHHHHhCCCcEEE
Q psy7829         447 RGAKVLEIGS-GSGYL-------------------------ATLMAHLVGPTGHVT  476 (511)
Q Consensus       447 ~~~~vLD~~~-g~g~~-------------------------~~~l~~~l~~~g~v~  476 (511)
                      .+..++|..| |.|.+                         ....++.|+|||.++
T Consensus       184 fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LV  239 (470)
T PRK11933        184 FDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLV  239 (470)
T ss_pred             cCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence            3567889988 77765                         223457789999874

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.55  E-value=1.3e-07  Score=90.30  Aligned_cols=92  Identities=23%  Similarity=0.273  Sum_probs=68.1

Q ss_pred             CCCCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccc---ccccc
Q psy7829         351 DNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH---IDLIA  427 (511)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~---v~~i~  427 (511)
                      .+.|.|...+..++..  ...... +|||+|||||.+++.+|+.. |+..|+|+|++++.++.|++|...++   +.++.
T Consensus        91 iPr~dTe~Lve~~l~~--~~~~~~-~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~  166 (280)
T COG2890          91 IPRPDTELLVEAALAL--LLQLDK-RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLVRVLVVQ  166 (280)
T ss_pred             ecCCchHHHHHHHHHh--hhhcCC-cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEe
Confidence            3446677777665532  222222 89999999999999999988 66899999999988887777766544   45666


Q ss_pred             ccccccccccchhhhhccc
Q psy7829         428 NETIEIIPHILDLCYLNLH  446 (511)
Q Consensus       428 ~d~~~~l~~~~d~i~~~l~  446 (511)
                      +|..+.+...+|.++.|.+
T Consensus       167 ~dlf~~~~~~fDlIVsNPP  185 (280)
T COG2890         167 SDLFEPLRGKFDLIVSNPP  185 (280)
T ss_pred             eecccccCCceeEEEeCCC
Confidence            6767777777888887764

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.54  E-value=5.3e-07  Score=87.09  Aligned_cols=105  Identities=30%  Similarity=0.242  Sum_probs=87.9

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ..+|.+|+|.-||-|++++.+|+...+  .|+++|++|.+++..++|+..|+    ....+..+++|..+.....+.+|.
T Consensus       186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~----v~~~v~~i~gD~rev~~~~~~aDr  259 (341)
T COG2520         186 VKEGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNK----VEGRVEPILGDAREVAPELGVADR  259 (341)
T ss_pred             hcCCCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcC----ccceeeEEeccHHHhhhccccCCE
Confidence            457999999999999999999998633  49999999999999999999986    344599999999875544478999


Q ss_pred             EEecCCC--CchHHHHHhhcccCcEEEEEEccC
Q psy7829         211 IYYGGCV--SEVPSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       211 I~~~~~~--~~~~~~~~~~LkpgG~l~~~~~~~  241 (511)
                      |+.+.+.  +.+...+.+.+++||.+.+....+
T Consensus       260 Iim~~p~~a~~fl~~A~~~~k~~g~iHyy~~~~  292 (341)
T COG2520         260 IIMGLPKSAHEFLPLALELLKDGGIIHYYEFVP  292 (341)
T ss_pred             EEeCCCCcchhhHHHHHHHhhcCcEEEEEeccc
Confidence            9999876  567788999999999998864433

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.53  E-value=1.3e-06  Score=78.08  Aligned_cols=115  Identities=27%  Similarity=0.344  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHh-hcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829         118 NQIADAAENLK-LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA  196 (511)
Q Consensus       118 ~~~~~~~~~l~-~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  196 (511)
                      .+.+.++..+. ..+++|.+||-+|+++|....+++...++++.|+++|.|+...+..-.-+++       -+||-.+..
T Consensus        57 KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-------R~NIiPIl~  129 (229)
T PF01269_consen   57 KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-------RPNIIPILE  129 (229)
T ss_dssp             HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-------STTEEEEES
T ss_pred             HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-------CCceeeeec
Confidence            45555555554 3578999999999999999999999999899999999999665555444443       358999999


Q ss_pred             cCCCCCC---CCCCccEEEecCCCCc----hHHHHHhhcccCcEEEEEEc
Q psy7829         197 DAREGYL---PEAPYDVIYYGGCVSE----VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       197 d~~~~~~---~~~~fD~I~~~~~~~~----~~~~~~~~LkpgG~l~~~~~  239 (511)
                      |+..+..   --+..|+|+++-+-+.    +..++...||+||.+++.+-
T Consensus       130 DAr~P~~Y~~lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iK  179 (229)
T PF01269_consen  130 DARHPEKYRMLVEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIISIK  179 (229)
T ss_dssp             -TTSGGGGTTTS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCChHHhhcccccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence            9985321   1257999999977654    23678889999999999763

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.53  E-value=7e-07  Score=81.90  Aligned_cols=99  Identities=16%  Similarity=0.102  Sum_probs=64.2

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc---------------cccccccccccccc
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST---------------NHIDLIANETIEII  434 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~---------------~~v~~i~~d~~~~l  434 (511)
                      ...++.+|||+|||.|..+++||...   -.|+|+|+++..++.+.+..+.               .+++++++|..+.-
T Consensus        31 ~~~~~~rvLd~GCG~G~da~~LA~~G---~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~  107 (213)
T TIGR03840        31 GLPAGARVFVPLCGKSLDLAWLAEQG---HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT  107 (213)
T ss_pred             CCCCCCeEEEeCCCchhHHHHHHhCC---CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCC
Confidence            44678899999999999999999764   7999999999888875443221               23555555544322


Q ss_pred             cccchhhhhcccCCcEEEEEcCCc-------cHHHHHHHHHhCCCcEEEEh
Q psy7829         435 PHILDLCYLNLHRGAKVLEIGSGS-------GYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       435 ~~~~d~i~~~l~~~~~vLD~~~g~-------g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ...       ...-..++|.+|-.       ......+.+.|+|+|.++.+
T Consensus       108 ~~~-------~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~  151 (213)
T TIGR03840       108 AAD-------LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI  151 (213)
T ss_pred             ccc-------CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence            100       01124456655421       22355777889999975444

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.53  E-value=5.2e-07  Score=82.10  Aligned_cols=104  Identities=14%  Similarity=0.071  Sum_probs=65.0

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccccccc-ccccchhhhhc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEI-IPHILDLCYLN  444 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~-l~~~~d~i~~~  444 (511)
                      +...++.+|||+|||+|..+..+|+..   .+|+++|+++++++.++++..   ..+++++..|.... .+..+|.++..
T Consensus        26 l~~~~~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~  102 (197)
T PRK11207         26 VKVVKPGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFILST  102 (197)
T ss_pred             cccCCCCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEEEEe
Confidence            445577899999999999999999763   799999999988887766554   34455555553221 12234444332


Q ss_pred             ccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         445 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       445 l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..-  ..++- .....+...+++.|+|+|.++.+
T Consensus       103 ~~~--~~~~~-~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207        103 VVL--MFLEA-KTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             cch--hhCCH-HHHHHHHHHHHHHcCCCcEEEEE
Confidence            110  00000 01124456778889999986543

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.52  E-value=2.2e-07  Score=89.30  Aligned_cols=84  Identities=20%  Similarity=0.352  Sum_probs=65.4

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----cccccccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETI  431 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~  431 (511)
                      .+..+.+++..  +.+.++++|||||||+|.+|..+++..   .+|+++|+++.++..+++++.    ..+++++++|..
T Consensus        21 d~~i~~~Iv~~--~~~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal   95 (294)
T PTZ00338         21 NPLVLDKIVEK--AAIKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDAL   95 (294)
T ss_pred             CHHHHHHHHHh--cCCCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHh
Confidence            45677777776  678899999999999999999998875   689999999999998887764    457899999876


Q ss_pred             ccccccchhhhhc
Q psy7829         432 EIIPHILDLCYLN  444 (511)
Q Consensus       432 ~~l~~~~d~i~~~  444 (511)
                      +.....++.++.|
T Consensus        96 ~~~~~~~d~VvaN  108 (294)
T PTZ00338         96 KTEFPYFDVCVAN  108 (294)
T ss_pred             hhcccccCEEEec
Confidence            6432233443333

>PLN03075 nicotianamine synthase; Provisional

Probab=98.52  E-value=2.4e-07  Score=87.92  Aligned_cols=102  Identities=12%  Similarity=0.113  Sum_probs=71.1

Q ss_pred             CCCCCCEEEEEeccccH-HHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-----cccccccccccccccc--ccchhh
Q psy7829         370 NLHRGAKVLEIGSGSGY-LATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-----TNHIDLIANETIEIIP--HILDLC  441 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~-~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-----~~~v~~i~~d~~~~l~--~~~d~i  441 (511)
                      ...++++|+|||||.|. .++.+++...|+++++++|++++++..|++.+.     .++++|..+|..+..+  ..+|.+
T Consensus       120 ~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlV  199 (296)
T PLN03075        120 VNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVV  199 (296)
T ss_pred             hcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEE
Confidence            33478999999999775 456666555588999999999999998888774     2558899888766432  346665


Q ss_pred             hhcccCCcEEEEEc-CCccHHHHHHHHHhCCCcEEE
Q psy7829         442 YLNLHRGAKVLEIG-SGSGYLATLMAHLVGPTGHVT  476 (511)
Q Consensus       442 ~~~l~~~~~vLD~~-~g~g~~~~~l~~~l~~~g~v~  476 (511)
                      +...     ++++- ...-.+...+++.++|||.++
T Consensus       200 F~~A-----Li~~dk~~k~~vL~~l~~~LkPGG~Lv  230 (296)
T PLN03075        200 FLAA-----LVGMDKEEKVKVIEHLGKHMAPGALLM  230 (296)
T ss_pred             EEec-----ccccccccHHHHHHHHHHhcCCCcEEE
Confidence            5431     22221 234455677888888988765

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.51  E-value=9.9e-07  Score=83.98  Aligned_cols=104  Identities=18%  Similarity=0.265  Sum_probs=72.5

Q ss_pred             CCEEEEEcCCccH----HHHHHHHHhC---CCceEEEEeCCHHHHHHHHHHH------------------hcc-C--CC-
Q psy7829         134 GAKVLDLGSGSGY----QTCVFAHMVG---PTGKVIGVEHIPELIEASLRNI------------------SKG-N--KD-  184 (511)
Q Consensus       134 ~~~vLDiG~G~G~----~~~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~------------------~~~-~--~~-  184 (511)
                      ..+|+..||+||-    +++.+.+..+   .+.+|+|+|+|+.+++.|++-.                  .+. +  .+ 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            4799999999994    4444444332   1467999999999999998641                  110 0  00 


Q ss_pred             c----CCCCCeEEEEccCCCC-CCCCCCccEEEecCCCCc--------hHHHHHhhcccCcEEEEE
Q psy7829         185 L----LDSGRVRIVEADAREG-YLPEAPYDVIYYGGCVSE--------VPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       185 ~----~~~~~v~~~~~d~~~~-~~~~~~fD~I~~~~~~~~--------~~~~~~~~LkpgG~l~~~  237 (511)
                      +    -....|+|.+.|+.+. ++..+.||+|+|.+++.+        +.+++.+.|+|||.|++.
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence            0    0124689999999863 333578999999877643        347899999999998763

>PRK04148 hypothetical protein; Provisional

Probab=98.51  E-value=2.8e-06  Score=70.57  Aligned_cols=90  Identities=16%  Similarity=0.105  Sum_probs=66.9

Q ss_pred             CCCCEEEEEcCCccH-HHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCC-CCCcc
Q psy7829         132 VDGAKVLDLGSGSGY-QTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLP-EAPYD  209 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD  209 (511)
                      .++.+|||||||+|. ++..|++..   ..|+++|+++.+++.++++            .++++.+|+++.... -..+|
T Consensus        15 ~~~~kileIG~GfG~~vA~~L~~~G---~~ViaIDi~~~aV~~a~~~------------~~~~v~dDlf~p~~~~y~~a~   79 (134)
T PRK04148         15 GKNKKIVELGIGFYFKVAKKLKESG---FDVIVIDINEKAVEKAKKL------------GLNAFVDDLFNPNLEIYKNAK   79 (134)
T ss_pred             ccCCEEEEEEecCCHHHHHHHHHCC---CEEEEEECCHHHHHHHHHh------------CCeEEECcCCCCCHHHHhcCC
Confidence            356899999999996 787887653   4799999999998888765            368999999864432 36699


Q ss_pred             EEEecCCCCchHHHHHhhccc-CcEEEE
Q psy7829         210 VIYYGGCVSEVPSRVLNQLKK-GGRILA  236 (511)
Q Consensus       210 ~I~~~~~~~~~~~~~~~~Lkp-gG~l~~  236 (511)
                      +|++.-+.+.+...+.++-+. |.-+++
T Consensus        80 liysirpp~el~~~~~~la~~~~~~~~i  107 (134)
T PRK04148         80 LIYSIRPPRDLQPFILELAKKINVPLII  107 (134)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHcCCCEEE
Confidence            999998887776555544433 444544

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.51  E-value=3.1e-07  Score=83.45  Aligned_cols=103  Identities=12%  Similarity=0.080  Sum_probs=62.5

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccc--cccccccc-cccccchhhhhcc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHID--LIANETIE-IIPHILDLCYLNL  445 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~--~i~~d~~~-~l~~~~d~i~~~l  445 (511)
                      +...++.+|||+|||+|..+..+|+..   .+|+++|+++.+++.++++....++.  +...|... .++..+|.++...
T Consensus        26 ~~~~~~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~  102 (195)
T TIGR00477        26 VKTVAPCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDFIFSTV  102 (195)
T ss_pred             hccCCCCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCEEEEec
Confidence            444567899999999999999999753   79999999999988876665544433  22222211 0122344333221


Q ss_pred             cCCcEEEEEcC-CccHHHHHHHHHhCCCcEEEEh
Q psy7829         446 HRGAKVLEIGS-GSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       446 ~~~~~vLD~~~-g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .-    -.+.. ..-.+...+++.|+|+|.++.+
T Consensus       103 ~~----~~~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477       103 VF----MFLQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             cc----ccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            00    00000 0123456778889999985544

Part of a tellurite-reducing operon tehA and tehB

>KOG0820|consensus

Probab=98.51  E-value=9.6e-07  Score=80.51  Aligned_cols=115  Identities=19%  Similarity=0.222  Sum_probs=87.7

Q ss_pred             cccCCCcccc-hhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCC
Q psy7829         106 ASLGYAGVMN-APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKD  184 (511)
Q Consensus       106 ~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~  184 (511)
                      +....|+++. .|.+.+.+++...  +++++.|||+|.|||.++..+.+..   .+|+++|+++.|+...+++.....  
T Consensus        32 fnkd~GQHilkNp~v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp--  104 (315)
T KOG0820|consen   32 FNKDFGQHILKNPLVIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTP--  104 (315)
T ss_pred             cccccchhhhcCHHHHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCC--
Confidence            3444566654 6778888888776  8999999999999999999999985   369999999999999999887642  


Q ss_pred             cCCCCCeEEEEccCCCCCCCCCCccEEEecCCCCchHHHHHhhcccC
Q psy7829         185 LLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKG  231 (511)
Q Consensus       185 ~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~~~~~~~Lkpg  231 (511)
                        .....+++.+|......  ..||.++++.+++--..-+.+.|.-+
T Consensus       105 --~~~kLqV~~gD~lK~d~--P~fd~cVsNlPyqISSp~vfKLL~~~  147 (315)
T KOG0820|consen  105 --KSGKLQVLHGDFLKTDL--PRFDGCVSNLPYQISSPLVFKLLLHR  147 (315)
T ss_pred             --ccceeeEEecccccCCC--cccceeeccCCccccCHHHHHhcCCC
Confidence              34579999999876432  46999999887754334444555444

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.50  E-value=5.7e-07  Score=92.34  Aligned_cols=127  Identities=14%  Similarity=0.158  Sum_probs=79.1

Q ss_pred             HHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccccccccc
Q psy7829         360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEIIPH  436 (511)
Q Consensus       360 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~l~~  436 (511)
                      ...+...  +.+.++.+|||+|||+|.+++.+|+..   .+|+++|+++++++.+++|+.   ..|++++.+|..+.++.
T Consensus       281 ~~~~~~~--l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~  355 (431)
T TIGR00479       281 VDRALEA--LELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPK  355 (431)
T ss_pred             HHHHHHH--hccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHH
Confidence            3344444  566778999999999999999999876   689999999999888777754   56788998887654332


Q ss_pred             cchhhhhcccCCcEEEEEcC-CccHHHHHHHHHhCCCcEEEEh--HHHHHHHHHHHHhcCC
Q psy7829         437 ILDLCYLNLHRGAKVLEIGS-GSGYLATLMAHLVGPTGHVTGL--EHMMDIAIESIANIST  494 (511)
Q Consensus       437 ~~d~i~~~l~~~~~vLD~~~-g~g~~~~~l~~~l~~~g~v~~~--~~ml~~a~~~~~~~~~  494 (511)
                      .   .......+-.++|... |...-.......++|++-++..  +..+..--+.+.+.|.
T Consensus       356 ~---~~~~~~~D~vi~dPPr~G~~~~~l~~l~~l~~~~ivyvsc~p~tlard~~~l~~~gy  413 (431)
T TIGR00479       356 Q---PWAGQIPDVLLLDPPRKGCAAEVLRTIIELKPERIVYVSCNPATLARDLEFLCKEGY  413 (431)
T ss_pred             H---HhcCCCCCEEEECcCCCCCCHHHHHHHHhcCCCEEEEEcCCHHHHHHHHHHHHHCCe
Confidence            1   0001112334445443 3222222333356776554444  5555555555555554

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.50  E-value=3e-07  Score=91.16  Aligned_cols=113  Identities=25%  Similarity=0.295  Sum_probs=71.4

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      +...+++.+.  ..++ +|||+.||.|.+++.+|...   .+|+|+|+++.+++.|++|+..++     .+|++|+.+++
T Consensus       185 l~~~~~~~l~--~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~-----i~n~~f~~~~~  253 (352)
T PF05958_consen  185 LYEQALEWLD--LSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNG-----IDNVEFIRGDA  253 (352)
T ss_dssp             HHHHHHHHCT--T-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT-------SEEEEE--S
T ss_pred             HHHHHHHHhh--cCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcC-----CCcceEEEeec
Confidence            3444444443  3334 89999999999999999876   369999999999999999999974     67999998876


Q ss_pred             CCCCC----------------CCCCccEEEecCCCCchHHHHHhhc-ccCcEEEEEEccCC
Q psy7829         199 REGYL----------------PEAPYDVIYYGGCVSEVPSRVLNQL-KKGGRILAPIGPMD  242 (511)
Q Consensus       199 ~~~~~----------------~~~~fD~I~~~~~~~~~~~~~~~~L-kpgG~l~~~~~~~~  242 (511)
                      .+...                ....+|+|+.++|-..+...+.+.+ ++.-.+++++.+.+
T Consensus       254 ~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~~~~ivYvSCnP~t  314 (352)
T PF05958_consen  254 EDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIKKLKRIVYVSCNPAT  314 (352)
T ss_dssp             HHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHHHSSEEEEEES-HHH
T ss_pred             cchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHhcCCeEEEEECCHHH
Confidence            42110                1125899999998765544333322 44557777777644

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.49  E-value=5.8e-07  Score=82.36  Aligned_cols=90  Identities=21%  Similarity=0.314  Sum_probs=67.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY  212 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~  212 (511)
                      ...++||||+|.|..+..++..+..   |++.|.|+.|....+++            .++++..|-..  ..+.+||+|.
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~---v~aTE~S~~Mr~rL~~k------------g~~vl~~~~w~--~~~~~fDvIs  156 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKE---VYATEASPPMRWRLSKK------------GFTVLDIDDWQ--QTDFKFDVIS  156 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcce---EEeecCCHHHHHHHHhC------------CCeEEehhhhh--ccCCceEEEe
Confidence            3568999999999999999998844   99999999996655442            23444333211  1236799999


Q ss_pred             ecCCCC------chHHHHHhhcccCcEEEEEEc
Q psy7829         213 YGGCVS------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       213 ~~~~~~------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      |-+.+.      .+++.+++.|+|+|++++.+-
T Consensus       157 cLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvV  189 (265)
T PF05219_consen  157 CLNVLDRCDRPLTLLRDIRRALKPNGRLILAVV  189 (265)
T ss_pred             ehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEE
Confidence            988774      345899999999999999754

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.49  E-value=1.5e-07  Score=78.00  Aligned_cols=103  Identities=19%  Similarity=0.258  Sum_probs=69.6

Q ss_pred             CCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----cccccccccccccc----cccchhhhhcc
Q psy7829         374 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETIEII----PHILDLCYLNL  445 (511)
Q Consensus       374 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~~l----~~~~d~i~~~l  445 (511)
                      |.+|||+|||+|.+++.+++..  ..+++++|+++..++.++.++..    .+++++.+|..+..    ...+|.++.+.
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np   78 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP   78 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred             CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECC
Confidence            5789999999999999999876  48999999999888888877763    35788888865543    34566666665


Q ss_pred             cCCcEE---EEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         446 HRGAKV---LEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       446 ~~~~~v---LD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +.....   -...--...+...+.+.++|+|.++.+
T Consensus        79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~  114 (117)
T PF13659_consen   79 PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI  114 (117)
T ss_dssp             STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            543221   000111223455667788888887654

...

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.49  E-value=7.1e-07  Score=80.68  Aligned_cols=54  Identities=20%  Similarity=0.356  Sum_probs=43.0

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANET  430 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~  430 (511)
                      ..+.++++|||+|||+|.++..+++...+.++|+++|+++.+        ..+++++++.|.
T Consensus        28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~~~i~~~~~d~   81 (188)
T TIGR00438        28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PIENVDFIRGDF   81 (188)
T ss_pred             cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cCCCceEEEeeC
Confidence            456789999999999999999999887556799999999864        234566666554

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.49  E-value=3.2e-07  Score=81.36  Aligned_cols=79  Identities=24%  Similarity=0.281  Sum_probs=60.6

Q ss_pred             HHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-ccccccccccccccccc--cc
Q psy7829         362 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNHIDLIANETIEIIPH--IL  438 (511)
Q Consensus       362 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~~l~~--~~  438 (511)
                      +++..  +.+.++++|||+|||+|.++..+++..   .+|+++|+++.+++.+++++. ..+++++++|..+....  .+
T Consensus         4 ~i~~~--~~~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~   78 (169)
T smart00650        4 KIVRA--ANLRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQP   78 (169)
T ss_pred             HHHHh--cCCCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCC
Confidence            44554  677889999999999999999999873   799999999999998888775 45788888887665321  24


Q ss_pred             hhhhhcc
Q psy7829         439 DLCYLNL  445 (511)
Q Consensus       439 d~i~~~l  445 (511)
                      +.++.++
T Consensus        79 d~vi~n~   85 (169)
T smart00650       79 YKVVGNL   85 (169)
T ss_pred             CEEEECC
Confidence            4444443

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.47  E-value=5.2e-07  Score=79.10  Aligned_cols=76  Identities=17%  Similarity=0.186  Sum_probs=59.5

Q ss_pred             EEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCCch------HHHHHhhcccCcEEE
Q psy7829         162 IGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRIL  235 (511)
Q Consensus       162 ~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~  235 (511)
                      +|+|+|++|++.|+++....+.  ....+++++++|+.+.+.++++||+|++...++++      ++++.++|||||.++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~--~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~   78 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKAR--SCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVS   78 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccc--cCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEE
Confidence            4899999999999877653210  02347999999998766566789999998887764      479999999999998


Q ss_pred             EEEc
Q psy7829         236 APIG  239 (511)
Q Consensus       236 ~~~~  239 (511)
                      +...
T Consensus        79 i~d~   82 (160)
T PLN02232         79 ILDF   82 (160)
T ss_pred             EEEC
Confidence            8533

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.46  E-value=1.5e-06  Score=80.60  Aligned_cols=105  Identities=17%  Similarity=0.165  Sum_probs=81.6

Q ss_pred             chhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEE
Q psy7829         115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIV  194 (511)
Q Consensus       115 ~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~  194 (511)
                      ..+.+...+++.+.  +.+++.|||||+|.|.+|..|++...   +|+++|+++.+++..++....       .+|++++
T Consensus        14 ~d~~v~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~-------~~n~~vi   81 (259)
T COG0030          14 IDKNVIDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFAP-------YDNLTVI   81 (259)
T ss_pred             cCHHHHHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhccc-------ccceEEE
Confidence            34556777888776  77789999999999999999999863   499999999999999988653       4589999


Q ss_pred             EccCCCCCCCCC-CccEEEecCCCCchHHHHHhhcccC
Q psy7829         195 EADAREGYLPEA-PYDVIYYGGCVSEVPSRVLNQLKKG  231 (511)
Q Consensus       195 ~~d~~~~~~~~~-~fD~I~~~~~~~~~~~~~~~~Lkpg  231 (511)
                      .+|+.....+.- .++.|++|.++.--..-+.++|+..
T Consensus        82 ~~DaLk~d~~~l~~~~~vVaNlPY~Isspii~kll~~~  119 (259)
T COG0030          82 NGDALKFDFPSLAQPYKVVANLPYNISSPILFKLLEEK  119 (259)
T ss_pred             eCchhcCcchhhcCCCEEEEcCCCcccHHHHHHHHhcc
Confidence            999986444311 6899999988864444445555443

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.46  E-value=6.3e-07  Score=87.72  Aligned_cols=102  Identities=17%  Similarity=0.155  Sum_probs=65.3

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHH--hh-cc-ccccccccccccccc-cccchhhhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESI--AN-IS-TNHIDLIANETIEII-PHILDLCYL  443 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~--~~-~~-~~~v~~i~~d~~~~l-~~~~d~i~~  443 (511)
                      +....|.+|||||||+|+++..++... + ..|+|+|.+..++.++.  ++ .+ ..+++++..+....- +..||.+++
T Consensus       118 l~~l~g~~VLDIGCG~G~~~~~la~~g-~-~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s  195 (322)
T PRK15068        118 LSPLKGRTVLDVGCGNGYHMWRMLGAG-A-KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFS  195 (322)
T ss_pred             hCCCCCCEEEEeccCCcHHHHHHHHcC-C-CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEE
Confidence            444568999999999999999998875 3 57999999987776432  22 22 346777766533221 334554443


Q ss_pred             cccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829         444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       444 ~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~  477 (511)
                      ..     ++..-..+-.+...+++.|+|||.++.
T Consensus       196 ~~-----vl~H~~dp~~~L~~l~~~LkpGG~lvl  224 (322)
T PRK15068        196 MG-----VLYHRRSPLDHLKQLKDQLVPGGELVL  224 (322)
T ss_pred             CC-----hhhccCCHHHHHHHHHHhcCCCcEEEE
Confidence            11     111112344556778888899998764

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.46  E-value=1.6e-07  Score=81.04  Aligned_cols=75  Identities=24%  Similarity=0.266  Sum_probs=55.3

Q ss_pred             EEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC---CCCCccEEE
Q psy7829         136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL---PEAPYDVIY  212 (511)
Q Consensus       136 ~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~I~  212 (511)
                      .|+|+.||.|..++.+|+.+ .  +|+++|+++..++.|+.|++-.|    ..++|+++++|+.+...   ....||+|+
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~-~--~Viaidid~~~~~~a~hNa~vYG----v~~~I~~i~gD~~~~~~~~~~~~~~D~vF   74 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTF-D--RVIAIDIDPERLECAKHNAEVYG----VADNIDFICGDFFELLKRLKSNKIFDVVF   74 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-----GGGEEEEES-HHHHGGGB------SEEE
T ss_pred             EEEEeccCcCHHHHHHHHhC-C--eEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEeCCHHHHHhhccccccccEEE
Confidence            69999999999999999986 3  59999999999999999999876    36789999999875322   112289999


Q ss_pred             ecCCC
Q psy7829         213 YGGCV  217 (511)
Q Consensus       213 ~~~~~  217 (511)
                      +++|.
T Consensus        75 lSPPW   79 (163)
T PF09445_consen   75 LSPPW   79 (163)
T ss_dssp             E---B
T ss_pred             ECCCC
Confidence            99876

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.45  E-value=4.6e-07  Score=88.76  Aligned_cols=59  Identities=12%  Similarity=0.102  Sum_probs=48.8

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccccccc
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEI  433 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~  433 (511)
                      .++.+|||+|||+|.+++.+|+..   .+|+|+|+++++++.+++|..   ..+++++++|..+.
T Consensus       172 ~~~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~  233 (315)
T PRK03522        172 LPPRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQF  233 (315)
T ss_pred             cCCCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHH
Confidence            357899999999999999999854   799999999988888777654   45688888886554

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.44  E-value=9.9e-07  Score=84.67  Aligned_cols=93  Identities=18%  Similarity=0.241  Sum_probs=66.7

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCC--cEEEEEcCCHHHHHHHHhhcccccccccccccccc--ccccchhhhhcccC
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPT--GHVTGLEHMMDIAIESIANISTNHIDLIANETIEI--IPHILDLCYLNLHR  447 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~--~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~--l~~~~d~i~~~l~~  447 (511)
                      ....+|||+|||+|+++..+++..+..  ..|+|+|+++++++.+.++.  +++.+..+|....  .+..+|.++.... 
T Consensus        84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~--~~~~~~~~d~~~lp~~~~sfD~I~~~~~-  160 (272)
T PRK11088         84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY--PQVTFCVASSHRLPFADQSLDAIIRIYA-  160 (272)
T ss_pred             CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC--CCCeEEEeecccCCCcCCceeEEEEecC-
Confidence            456789999999999999999876321  37999999999999987764  4567766664432  2334555543221 


Q ss_pred             CcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         448 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       448 ~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                                 ......+.+.|+|+|.++.+
T Consensus       161 -----------~~~~~e~~rvLkpgG~li~~  180 (272)
T PRK11088        161 -----------PCKAEELARVVKPGGIVITV  180 (272)
T ss_pred             -----------CCCHHHHHhhccCCCEEEEE
Confidence                       12346788899999999877

>KOG1500|consensus

Probab=98.43  E-value=1e-06  Score=82.29  Aligned_cols=133  Identities=22%  Similarity=0.319  Sum_probs=91.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY  212 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~  212 (511)
                      .+..|||+|||+|.++...+...  ..+|+++|.| +|.+.|++.++.+.    ..++|.++.|.+++.-.+ ++.|+|+
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS-~MAqyA~~Lv~~N~----~~~rItVI~GKiEdieLP-Ek~DviI  248 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEAS-EMAQYARKLVASNN----LADRITVIPGKIEDIELP-EKVDVII  248 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhC--cceEEEEehh-HHHHHHHHHHhcCC----ccceEEEccCccccccCc-hhccEEE
Confidence            57789999999999999988885  4689999985 78899999988874    678999999998764333 6799999


Q ss_pred             ecCCCC-----chH---HHHHhhcccCcEEEEEEccCC----CcceE--EEEEEecCCeEEEEeecceEEEeccccc
Q psy7829         213 YGGCVS-----EVP---SRVLNQLKKGGRILAPIGPMD----DFQKL--TQIDRFHDNTLQKTDLFEVAYDAIMRKA  275 (511)
Q Consensus       213 ~~~~~~-----~~~---~~~~~~LkpgG~l~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~  275 (511)
                      +.++-.     .++   -..+++|||.|.++-.++.-.    .++.+  +.+.+  ...|+...+.++...||....
T Consensus       249 SEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nk--AnFWyQq~fyGVdLt~L~g~a  323 (517)
T KOG1500|consen  249 SEPMGYMLVNERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNK--ANFWYQQNFYGVDLTPLYGSA  323 (517)
T ss_pred             eccchhhhhhHHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhh--hhhhhhhccccccchhhhhhh
Confidence            876532     222   235699999999975444211    11110  11111  234566666677777776544

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.42  E-value=1.7e-06  Score=81.40  Aligned_cols=111  Identities=21%  Similarity=0.319  Sum_probs=73.1

Q ss_pred             HHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----cccccccccccccc--
Q psy7829         361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETIEII--  434 (511)
Q Consensus       361 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~~l--  434 (511)
                      ..++..  +...++.+|||+|||+|..+..++..++++.+++++|+++++++.+.+++..    .++.++..|..+..  
T Consensus        41 ~~~~~~--~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  118 (239)
T PRK00216         41 RKTIKW--LGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP  118 (239)
T ss_pred             HHHHHH--hCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC
Confidence            344554  5566789999999999999999998874368999999999999888877653    44666666644321  


Q ss_pred             cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         435 PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       435 ~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +..+|.++..     .++......-.+...+.+.++|+|.++.+
T Consensus       119 ~~~~D~I~~~-----~~l~~~~~~~~~l~~~~~~L~~gG~li~~  157 (239)
T PRK00216        119 DNSFDAVTIA-----FGLRNVPDIDKALREMYRVLKPGGRLVIL  157 (239)
T ss_pred             CCCccEEEEe-----cccccCCCHHHHHHHHHHhccCCcEEEEE
Confidence            1233433221     01111122334456677788999987654

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.42  E-value=1.1e-06  Score=86.27  Aligned_cols=118  Identities=22%  Similarity=0.223  Sum_probs=80.4

Q ss_pred             hHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHh------CCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCC
Q psy7829         117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMV------GPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGR  190 (511)
Q Consensus       117 p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~------~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~  190 (511)
                      ..+...+.+++.  ..++.+|+|-+||+|.+...+.+.+      ....+++|+|+++.++..|+-++.-.+.   ...+
T Consensus        32 ~~i~~l~~~~~~--~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~---~~~~  106 (311)
T PF02384_consen   32 REIVDLMVKLLN--PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI---DNSN  106 (311)
T ss_dssp             HHHHHHHHHHHT--T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH---HCBG
T ss_pred             HHHHHHHHhhhh--ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc---cccc
Confidence            345666677774  6678899999999999988887743      2467899999999999999988765431   2334


Q ss_pred             eEEEEccCCCCCCC--CCCccEEEecCCCCc---------------------------hHHHHHhhcccCcEEEEEEc
Q psy7829         191 VRIVEADAREGYLP--EAPYDVIYYGGCVSE---------------------------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       191 v~~~~~d~~~~~~~--~~~fD~I~~~~~~~~---------------------------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      ..+..+|.......  ...||+|++++|+..                           +...+.+.|++||++.+.+.
T Consensus       107 ~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp  184 (311)
T PF02384_consen  107 INIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP  184 (311)
T ss_dssp             CEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence            56888887643322  368999999988721                           12567899999999877554

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.42  E-value=2.7e-06  Score=75.69  Aligned_cols=112  Identities=27%  Similarity=0.326  Sum_probs=84.9

Q ss_pred             HHHHHHh--hcCCCCC-EEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         122 DAAENLK--LHLVDGA-KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       122 ~~~~~l~--~~~~~~~-~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      ++++.+.  ..+.... +++|||+|.|.-++.+|-.. |+.+++.+|....-+...+.-....     +.+|++++++.+
T Consensus        34 Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L-----~L~nv~v~~~R~  107 (184)
T PF02527_consen   34 HILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVREL-----GLSNVEVINGRA  107 (184)
T ss_dssp             HHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHH-----T-SSEEEEES-H
T ss_pred             HHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHh-----CCCCEEEEEeee
Confidence            4455443  1233333 89999999999999999987 8899999999999999888888875     467999999998


Q ss_pred             CCCCCCCCCccEEEecCCCC--chHHHHHhhcccCcEEEEEEcc
Q psy7829         199 REGYLPEAPYDVIYYGGCVS--EVPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       199 ~~~~~~~~~fD~I~~~~~~~--~~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      ++ ......||+|++-+..+  .+..-+...|++||.+++.-+.
T Consensus       108 E~-~~~~~~fd~v~aRAv~~l~~l~~~~~~~l~~~G~~l~~KG~  150 (184)
T PF02527_consen  108 EE-PEYRESFDVVTARAVAPLDKLLELARPLLKPGGRLLAYKGP  150 (184)
T ss_dssp             HH-TTTTT-EEEEEEESSSSHHHHHHHHGGGEEEEEEEEEEESS
T ss_pred             cc-cccCCCccEEEeehhcCHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            87 33447899999987654  3456778899999999987654

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PRK14968 putative methyltransferase; Provisional

Probab=98.41  E-value=1.5e-06  Score=78.51  Aligned_cols=123  Identities=20%  Similarity=0.262  Sum_probs=76.3

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc---cc--cccccccccccccc-cchhhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST---NH--IDLIANETIEIIPH-ILDLCY  442 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~---~~--v~~i~~d~~~~l~~-~~d~i~  442 (511)
                      +...++.+|||+|||+|+++..++.. +  .+|+++|+++++++.+++++..   .+  +.++.+|..+.+.. .++.+.
T Consensus        19 ~~~~~~~~vLd~G~G~G~~~~~l~~~-~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi   95 (188)
T PRK14968         19 AVDKKGDRVLEVGTGSGIVAIVAAKN-G--KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVIL   95 (188)
T ss_pred             hhccCCCEEEEEccccCHHHHHHHhh-c--ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEE
Confidence            44478899999999999999999987 3  8999999999888887766542   22  56666665443332 355554


Q ss_pred             hcccCCc----------EEEEEcCCcc------HHHHHHHHHhCCCcEEEEh-HH--HHHHHHHHHHhcCC
Q psy7829         443 LNLHRGA----------KVLEIGSGSG------YLATLMAHLVGPTGHVTGL-EH--MMDIAIESIANIST  494 (511)
Q Consensus       443 ~~l~~~~----------~vLD~~~g~g------~~~~~l~~~l~~~g~v~~~-~~--ml~~a~~~~~~~~~  494 (511)
                      .+.+-..          .-..+.+|..      .+...+.+.++|+|.++.+ ..  -.+...+.+.+.|+
T Consensus        96 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~  166 (188)
T PRK14968         96 FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGF  166 (188)
T ss_pred             ECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCC
Confidence            3321100          0001112211      2356667889999987665 11  13445556666665

>KOG1270|consensus

Probab=98.41  E-value=2e-07  Score=84.75  Aligned_cols=96  Identities=21%  Similarity=0.322  Sum_probs=60.9

Q ss_pred             CCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccc---------cccccccccccccccchhhhhc
Q psy7829         374 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH---------IDLIANETIEIIPHILDLCYLN  444 (511)
Q Consensus       374 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~---------v~~i~~d~~~~l~~~~d~i~~~  444 (511)
                      |.+|||+|||+|-++..||+..   ..|+|||.+.++++.|.+....+.         +++.+.+... ....||.+..-
T Consensus        90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~-~~~~fDaVvcs  165 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG-LTGKFDAVVCS  165 (282)
T ss_pred             CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh-cccccceeeeH
Confidence            6889999999999999999876   899999999999998887743211         3333333222 22224433210


Q ss_pred             ccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         445 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       445 l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                           .+++--..+-.++..+.+.++|+|+++..
T Consensus       166 -----evleHV~dp~~~l~~l~~~lkP~G~lfit  194 (282)
T KOG1270|consen  166 -----EVLEHVKDPQEFLNCLSALLKPNGRLFIT  194 (282)
T ss_pred             -----HHHHHHhCHHHHHHHHHHHhCCCCceEee
Confidence                 11111223445556677777887776654

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.40  E-value=2.3e-06  Score=81.17  Aligned_cols=101  Identities=26%  Similarity=0.301  Sum_probs=82.1

Q ss_pred             CEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCccEEEe
Q psy7829         135 AKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYDVIYY  213 (511)
Q Consensus       135 ~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I~~  213 (511)
                      .+||-||.|.|..+..+.+.. +..+++.+|+++..++.|++.+.....+. ..++++++..|+.+... ...+||+|++
T Consensus        78 k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~-~dpRv~i~i~Dg~~~v~~~~~~fDvIi~  155 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGA-DDPRVEIIIDDGVEFLRDCEEKFDVIIV  155 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCccccc-CCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence            699999999999999999986 67899999999999999999988753211 15889999999875333 2247999998


Q ss_pred             cCCCC----------chHHHHHhhcccCcEEEEE
Q psy7829         214 GGCVS----------EVPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       214 ~~~~~----------~~~~~~~~~LkpgG~l~~~  237 (511)
                      +..-+          .+.+.+.+.|+++|.++.-
T Consensus       156 D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         156 DSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             cCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            75443          3448899999999999885

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.40  E-value=1.3e-06  Score=88.65  Aligned_cols=97  Identities=24%  Similarity=0.264  Sum_probs=68.5

Q ss_pred             CCEEEEEcCCccHHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         134 GAKVLDLGSGSGYQTCVFAHMV---GPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       134 ~~~vLDiG~G~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      +..|+|||||+|-++...+++.   +...+|+++|.++.++...++.++.++    ..++|+++.+|+++... ..++|+
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~----w~~~V~vi~~d~r~v~l-pekvDI  261 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG----WGDKVTVIHGDMREVEL-PEKVDI  261 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT----TTTTEEEEES-TTTSCH-SS-EEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC----CCCeEEEEeCcccCCCC-CCceeE
Confidence            4679999999999987666543   345789999999998888777766654    45789999999987433 368999


Q ss_pred             EEecCC----CC----chHHHHHhhcccCcEEE
Q psy7829         211 IYYGGC----VS----EVPSRVLNQLKKGGRIL  235 (511)
Q Consensus       211 I~~~~~----~~----~~~~~~~~~LkpgG~l~  235 (511)
                      |++-..    ..    ..+....+.|||||.++
T Consensus       262 IVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  262 IVSELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             EEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             EEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            997532    22    23356678999998774

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.39  E-value=2e-06  Score=82.20  Aligned_cols=92  Identities=22%  Similarity=0.297  Sum_probs=74.0

Q ss_pred             hHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829         117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA  196 (511)
Q Consensus       117 p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  196 (511)
                      |-+...+++.|.  +.++..++|.-+|.|..+..+++.++ .++|+|+|.++.+++.+++++...      ..+++++++
T Consensus         6 pVll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~------~~R~~~i~~   76 (305)
T TIGR00006         6 SVLLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDF------EGRVVLIHD   76 (305)
T ss_pred             chhHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhc------CCcEEEEeC
Confidence            557778888886  67888999999999999999999884 499999999999999999988763      357999999


Q ss_pred             cCCCCC-----CCCCCccEEEecCCC
Q psy7829         197 DAREGY-----LPEAPYDVIYYGGCV  217 (511)
Q Consensus       197 d~~~~~-----~~~~~fD~I~~~~~~  217 (511)
                      +..+..     ....++|.|+.+..+
T Consensus        77 nF~~l~~~l~~~~~~~vDgIl~DLGv  102 (305)
T TIGR00006        77 NFANFFEHLDELLVTKIDGILVDLGV  102 (305)
T ss_pred             CHHHHHHHHHhcCCCcccEEEEeccC
Confidence            876321     122568999877444

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>TIGR00452 methyltransferase, putative

Probab=98.39  E-value=1.3e-06  Score=84.56  Aligned_cols=102  Identities=16%  Similarity=0.119  Sum_probs=61.1

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHH--hh-cc-ccccccccccccccc-cccchhhhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESI--AN-IS-TNHIDLIANETIEII-PHILDLCYL  443 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~--~~-~~-~~~v~~i~~d~~~~l-~~~~d~i~~  443 (511)
                      +...++.+|||||||+|+++..++... + .+|+|+|++..+..++.  ++ .. ..++.+...+..+.. ...||.+++
T Consensus       117 l~~~~g~~VLDvGCG~G~~~~~~~~~g-~-~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s  194 (314)
T TIGR00452       117 LSPLKGRTILDVGCGSGYHMWRMLGHG-A-KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFS  194 (314)
T ss_pred             cCCCCCCEEEEeccCCcHHHHHHHHcC-C-CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEE
Confidence            456778999999999999999888664 3 58999999988776532  22 22 233444443322111 113444332


Q ss_pred             cccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829         444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       444 ~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~  477 (511)
                      ..     ++..-..+-.....+++.|+|||.++.
T Consensus       195 ~g-----vL~H~~dp~~~L~el~r~LkpGG~Lvl  223 (314)
T TIGR00452       195 MG-----VLYHRKSPLEHLKQLKHQLVIKGELVL  223 (314)
T ss_pred             cc-----hhhccCCHHHHHHHHHHhcCCCCEEEE
Confidence            11     111112233456778888899998874

Known examples to date are restricted to the proteobacteria.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.38  E-value=1.5e-06  Score=81.72  Aligned_cols=100  Identities=21%  Similarity=0.335  Sum_probs=68.3

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccc--cccchhhhhcccCCc
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEII--PHILDLCYLNLHRGA  449 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l--~~~~d~i~~~l~~~~  449 (511)
                      ..+.+|||+|||+|.++..+++.. +..+++++|+++++++.+.++.. .++.++.+|.....  +..+|.++...    
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~vi~~~----  106 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS-ENVQFICGDAEKLPLEDSSFDLIVSNL----  106 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC-CCCeEEecchhhCCCCCCceeEEEEhh----
Confidence            345789999999999999999886 67889999999999988887765 36777766643321  23344443321    


Q ss_pred             EEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         450 KVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       450 ~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                       ++......-.+...+.+.++|+|.++..
T Consensus       107 -~l~~~~~~~~~l~~~~~~L~~~G~l~~~  134 (240)
T TIGR02072       107 -ALQWCDDLSQALSELARVLKPGGLLAFS  134 (240)
T ss_pred             -hhhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence             1111123344566777888998888754

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK06922 hypothetical protein; Provisional

Probab=98.38  E-value=9.4e-07  Score=91.74  Aligned_cols=108  Identities=11%  Similarity=0.178  Sum_probs=71.2

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc--ccccccccccccc----ccccchhhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST--NHIDLIANETIEI----IPHILDLCY  442 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~--~~v~~i~~d~~~~----l~~~~d~i~  442 (511)
                      ....++.+|||+|||+|..+..+++.. |+++|+|+|+++.+++.++++...  .+++++++|....    .+..+|.++
T Consensus       414 ~d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVV  492 (677)
T PRK06922        414 LDYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIV  492 (677)
T ss_pred             hhhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEE
Confidence            344578999999999999999999877 779999999999999988776543  3466677775442    123345443


Q ss_pred             hcccCCcEEEE-Ec-----C---CccHHHHHHHHHhCCCcEEEEh
Q psy7829         443 LNLHRGAKVLE-IG-----S---GSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       443 ~~l~~~~~vLD-~~-----~---g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .+..-.. +++ +.     .   ....+...+.+.|+|||.++..
T Consensus       493 sn~vLH~-L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~  536 (677)
T PRK06922        493 YSSILHE-LFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR  536 (677)
T ss_pred             EchHHHh-hhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            3211000 000 00     0   1123456677889999998876

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.37  E-value=1.4e-06  Score=80.17  Aligned_cols=98  Identities=17%  Similarity=0.139  Sum_probs=63.4

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHH-HHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEA-SLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~-a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      .++.+|||+|||+|.++..+++..  ..+|+++|+++.++.. .+++..-.   .+...|++  ..+..+.+..-..+|+
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~g--a~~v~avD~~~~~l~~~l~~~~~v~---~~~~~ni~--~~~~~~~~~d~~~~Dv  146 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQKG--AKEVYGVDVGYNQLAEKLRQDERVK---VLERTNIR--YVTPADIFPDFATFDV  146 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHhcCCCee---EeecCCcc--cCCHhHcCCCceeeeE
Confidence            367799999999999999999973  4689999999987765 22221100   00112333  1121122222246888


Q ss_pred             EEecCCCCchHHHHHhhcccCcEEEEEEc
Q psy7829         211 IYYGGCVSEVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       211 I~~~~~~~~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      ++++..  .+...+.+.|+| |.+++-+-
T Consensus       147 sfiS~~--~~l~~i~~~l~~-~~~~~L~K  172 (228)
T TIGR00478       147 SFISLI--SILPELDLLLNP-NDLTLLFK  172 (228)
T ss_pred             EEeehH--hHHHHHHHHhCc-CeEEEEcC
Confidence            877643  367899999999 88877553

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.37  E-value=1.4e-06  Score=85.28  Aligned_cols=108  Identities=18%  Similarity=0.201  Sum_probs=70.4

Q ss_pred             HHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----cccccccccccccc-c
Q psy7829         360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETIEI-I  434 (511)
Q Consensus       360 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~~~-l  434 (511)
                      ...++..  +..+++.+|||||||+|.+++.+++.. |+.+++++|. +++++.+++++.    .++++++.+|..+. +
T Consensus       138 ~~~l~~~--~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~  213 (306)
T TIGR02716       138 IQLLLEE--AKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY  213 (306)
T ss_pred             HHHHHHH--cCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC
Confidence            3344454  667888999999999999999999998 7799999997 566666555544    24577887775532 2


Q ss_pred             cccchhhhhcccCCcEEEEEcCCcc---HHHHHHHHHhCCCcEEEEh
Q psy7829         435 PHILDLCYLNLHRGAKVLEIGSGSG---YLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       435 ~~~~d~i~~~l~~~~~vLD~~~g~g---~~~~~l~~~l~~~g~v~~~  478 (511)
                      +. .|.++..     .++ ...+..   .+...+++.++|||+++.+
T Consensus       214 ~~-~D~v~~~-----~~l-h~~~~~~~~~il~~~~~~L~pgG~l~i~  253 (306)
T TIGR02716       214 PE-ADAVLFC-----RIL-YSANEQLSTIMCKKAFDAMRSGGRLLIL  253 (306)
T ss_pred             CC-CCEEEeE-----hhh-hcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence            22 2332211     011 011222   2455677888999998776

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.37  E-value=1e-06  Score=83.57  Aligned_cols=73  Identities=26%  Similarity=0.359  Sum_probs=61.2

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-cccccccccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNHIDLIANETIEI  433 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~~  433 (511)
                      .+..+..+++.  +...++++|||||||+|.++..+++..   .+|+++|+++++++.+.++.. ..+++++++|..+.
T Consensus        14 d~~i~~~i~~~--~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~   87 (253)
T TIGR00755        14 DESVIQKIVEA--ANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKV   87 (253)
T ss_pred             CHHHHHHHHHh--cCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcC
Confidence            45677778876  677889999999999999999999887   569999999999998887765 46788888887553

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK00536 speE spermidine synthase; Provisional

Probab=98.37  E-value=4.2e-06  Score=78.43  Aligned_cols=99  Identities=12%  Similarity=0.009  Sum_probs=76.8

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEE
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVI  211 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I  211 (511)
                      +...+||=||.|-|..+..+.++  +. +|+.+|+++++++.+++.+...... +..+|++++.. ..+  ...++||+|
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh--~~-~v~mVeID~~Vv~~~k~~lP~~~~~-~~DpRv~l~~~-~~~--~~~~~fDVI  143 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKY--DT-HVDFVQADEKILDSFISFFPHFHEV-KNNKNFTHAKQ-LLD--LDIKKYDLI  143 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCc--CC-eeEEEECCHHHHHHHHHHCHHHHHh-hcCCCEEEeeh-hhh--ccCCcCCEE
Confidence            45689999999999999999997  33 8999999999999999976653211 35678888762 211  123689999


Q ss_pred             EecCCC-CchHHHHHhhcccCcEEEEE
Q psy7829         212 YYGGCV-SEVPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       212 ~~~~~~-~~~~~~~~~~LkpgG~l~~~  237 (511)
                      +++... ..+.+.+++.|+|||.++.-
T Consensus       144 IvDs~~~~~fy~~~~~~L~~~Gi~v~Q  170 (262)
T PRK00536        144 ICLQEPDIHKIDGLKRMLKEDGVFISV  170 (262)
T ss_pred             EEcCCCChHHHHHHHHhcCCCcEEEEC
Confidence            999544 45668899999999999873

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.36  E-value=8.1e-07  Score=89.08  Aligned_cols=121  Identities=13%  Similarity=0.169  Sum_probs=78.1

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc-----cccccccccccccc------ccchh
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN-----HIDLIANETIEIIP------HILDL  440 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~-----~v~~i~~d~~~~l~------~~~d~  440 (511)
                      .++.+|||+|||+|.+++.++..  ...+|+++|+++.+++.+.+|+..+     +++++++|..+.+.      ..||.
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDl  296 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV  296 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence            46899999999999999876643  2269999999998888888777643     56788888766542      24666


Q ss_pred             hhhcccCCc---EEEE-EcCCccHHHHHHHHHhCCCcEEEEh--------HHHHHHHHHHHHhcCC
Q psy7829         441 CYLNLHRGA---KVLE-IGSGSGYLATLMAHLVGPTGHVTGL--------EHMMDIAIESIANIST  494 (511)
Q Consensus       441 i~~~l~~~~---~vLD-~~~g~g~~~~~l~~~l~~~g~v~~~--------~~ml~~a~~~~~~~~~  494 (511)
                      ++.+.+.-.   .-+. ...+-..+.....+.++|+|.++..        +...+...+.+...+.
T Consensus       297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~  362 (396)
T PRK15128        297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGR  362 (396)
T ss_pred             EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCC
Confidence            666544211   0000 0011112223455778999998864        4555666666665553

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.36  E-value=6.6e-06  Score=80.06  Aligned_cols=121  Identities=18%  Similarity=0.099  Sum_probs=89.3

Q ss_pred             CcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhC---C----------------------------Cc
Q psy7829         111 AGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVG---P----------------------------TG  159 (511)
Q Consensus       111 ~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~---~----------------------------~~  159 (511)
                      +..-..+.+.+.++.+..  .+++..++|-=||||.+.+..|....   |                            .+
T Consensus       171 g~ApLketLAaAil~lag--w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a  248 (381)
T COG0116         171 GPAPLKETLAAAILLLAG--WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERA  248 (381)
T ss_pred             CCCCchHHHHHHHHHHcC--CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHH
Confidence            333334455555555443  67778999999999999998887642   1                            11


Q ss_pred             -------eEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCC--------------
Q psy7829         160 -------KVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVS--------------  218 (511)
Q Consensus       160 -------~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~--------------  218 (511)
                             .++|+|+++.+++.|+.|+..+|    ..+.|+|.++|+.....+...+|+|++|+|+-              
T Consensus       249 ~~~~~~~~~~G~Did~r~i~~Ak~NA~~AG----v~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~  324 (381)
T COG0116         249 RRGKELPIIYGSDIDPRHIEGAKANARAAG----VGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYR  324 (381)
T ss_pred             hhcCccceEEEecCCHHHHHHHHHHHHhcC----CCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHH
Confidence                   37799999999999999999988    46789999999986443337899999999982              


Q ss_pred             chHHHHHhhcccCcEEEEE
Q psy7829         219 EVPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       219 ~~~~~~~~~LkpgG~l~~~  237 (511)
                      .+.+.+++.++--+..++.
T Consensus       325 ~fg~~lk~~~~~ws~~v~t  343 (381)
T COG0116         325 EFGRTLKRLLAGWSRYVFT  343 (381)
T ss_pred             HHHHHHHHHhcCCceEEEE
Confidence            1224566777777777774

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.35  E-value=1.1e-06  Score=80.18  Aligned_cols=60  Identities=23%  Similarity=0.370  Sum_probs=48.7

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccc
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIE  432 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~  432 (511)
                      .+.++.+|||+|||+|..+..+++.. +..+++|+|+++++++.++++..  ++.+++++..+
T Consensus        40 ~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~--~~~~~~~d~~~   99 (204)
T TIGR03587        40 RLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLP--NINIIQGSLFD   99 (204)
T ss_pred             hcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCC--CCcEEEeeccC
Confidence            45678899999999999999998876 45899999999999999988753  45666665443

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.34  E-value=1.5e-06  Score=80.68  Aligned_cols=72  Identities=24%  Similarity=0.374  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-cccccccccccccc
Q psy7829         357 ERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNHIDLIANETIEI  433 (511)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~~  433 (511)
                      +..+.+++..  +.+.+++.|||||+|.|.+|..|++..   .+|++||+|..++..-.+... ..|++++++|+++.
T Consensus        16 ~~v~~kIv~~--a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~   88 (259)
T COG0030          16 KNVIDKIVEA--ANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKF   88 (259)
T ss_pred             HHHHHHHHHh--cCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcC
Confidence            3567788887  788889999999999999999999987   789999999999998887775 78899999998765

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.33  E-value=3e-06  Score=77.98  Aligned_cols=98  Identities=16%  Similarity=0.073  Sum_probs=62.4

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc---------------ccccccccccccc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST---------------NHIDLIANETIEI  433 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~---------------~~v~~i~~d~~~~  433 (511)
                      +...++.+|||+|||.|..+++||...   .+|+|||+++..++++....+.               .+|++.++|..+.
T Consensus        33 ~~~~~~~rvL~~gCG~G~da~~LA~~G---~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l  109 (218)
T PRK13255         33 LALPAGSRVLVPLCGKSLDMLWLAEQG---HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFAL  109 (218)
T ss_pred             hCCCCCCeEEEeCCCChHhHHHHHhCC---CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCC
Confidence            355678899999999999999999754   7999999999888876433222               3355555554443


Q ss_pred             ccccchhhhhcccCCcEEEEEcCC----c---cHHHHHHHHHhCCCcEEE
Q psy7829         434 IPHILDLCYLNLHRGAKVLEIGSG----S---GYLATLMAHLVGPTGHVT  476 (511)
Q Consensus       434 l~~~~d~i~~~l~~~~~vLD~~~g----~---g~~~~~l~~~l~~~g~v~  476 (511)
                      .+..       ...-..++|-+|-    +   ......+.+.|+|+|.+.
T Consensus       110 ~~~~-------~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~  152 (218)
T PRK13255        110 TAAD-------LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGL  152 (218)
T ss_pred             Cccc-------CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEE
Confidence            2110       1112345554431    1   123566778889997644

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.33  E-value=9.8e-07  Score=79.74  Aligned_cols=112  Identities=18%  Similarity=0.309  Sum_probs=77.0

Q ss_pred             CCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHh---hcccccccccccccccccc-----ccchhhhhcc
Q psy7829         374 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA---NISTNHIDLIANETIEIIP-----HILDLCYLNL  445 (511)
Q Consensus       374 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~---~~~~~~v~~i~~d~~~~l~-----~~~d~i~~~l  445 (511)
                      ...+||||||.|.+.+.+|... |+..++|||+....+.++.+   ..+..|+.++++|+...+.     ..++.++.+.
T Consensus        18 ~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F   96 (195)
T PF02390_consen   18 NPLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF   96 (195)
T ss_dssp             CEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred             CCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence            3389999999999999999988 88999999999777766544   3468899999998776543     3445555544


Q ss_pred             cCCc--------EEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHh
Q psy7829         446 HRGA--------KVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIAN  491 (511)
Q Consensus       446 ~~~~--------~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~  491 (511)
                      +..+        +++     +-.+...+++.|+|||.+...   +...+.+.+.+..
T Consensus        97 PDPWpK~rH~krRl~-----~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~  148 (195)
T PF02390_consen   97 PDPWPKKRHHKRRLV-----NPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEE  148 (195)
T ss_dssp             -----SGGGGGGSTT-----SHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred             CCCCcccchhhhhcC-----CchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            4322        333     234567788999999999877   5555555555555

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.33  E-value=1.3e-06  Score=81.41  Aligned_cols=98  Identities=18%  Similarity=0.178  Sum_probs=65.5

Q ss_pred             CEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----ccccccccccccc-ccccchhhhhcccCCc
Q psy7829         375 AKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETIEI-IPHILDLCYLNLHRGA  449 (511)
Q Consensus       375 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~~-l~~~~d~i~~~l~~~~  449 (511)
                      ++|||||||+|..+..+++.+ ++.+|+++|++++++..+.+++..    .++.++..|..+. .+..+|.++...    
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~----   75 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFE----   75 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHH----
Confidence            479999999999999999887 558999999999999888777643    3456666654322 223344443211    


Q ss_pred             EEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         450 KVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       450 ~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                       ++..-.....+...+.+.|+|+|.++..
T Consensus        76 -~l~~~~~~~~~l~~~~~~LkpgG~l~i~  103 (224)
T smart00828       76 -VIHHIKDKMDLFSNISRHLKDGGHLVLA  103 (224)
T ss_pred             -HHHhCCCHHHHHHHHHHHcCCCCEEEEE
Confidence             0000012334556778888999988765

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.32  E-value=1.7e-06  Score=86.75  Aligned_cols=72  Identities=13%  Similarity=0.115  Sum_probs=52.8

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccccccccc---ccchhhhhcc
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEIIP---HILDLCYLNL  445 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~l~---~~~d~i~~~l  445 (511)
                      .++.+|||+|||+|.+++.+|...   .+|+++|+++..++.+++|..   ..+++++.+|..+.+.   ..+|.++.+.
T Consensus       232 ~~~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DP  308 (374)
T TIGR02085       232 IPVTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNP  308 (374)
T ss_pred             cCCCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECC
Confidence            456899999999999999999654   789999999888887776654   4567888887654432   1245555543


Q ss_pred             c
Q psy7829         446 H  446 (511)
Q Consensus       446 ~  446 (511)
                      +
T Consensus       309 P  309 (374)
T TIGR02085       309 P  309 (374)
T ss_pred             C
Confidence            3

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.32  E-value=1.2e-06  Score=78.33  Aligned_cols=100  Identities=23%  Similarity=0.248  Sum_probs=68.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY  212 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~  212 (511)
                      ...+.||.|+|-|.+|..+....  --+|..+|..+..++.|++.+....     ..-.++++.-+.+..+..+.||+|+
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~-----~~v~~~~~~gLQ~f~P~~~~YDlIW  127 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDN-----PRVGEFYCVGLQDFTPEEGKYDLIW  127 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGG-----CCEEEEEES-GGG----TT-EEEEE
T ss_pred             CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccC-----CCcceEEecCHhhccCCCCcEeEEE
Confidence            34689999999999998665443  2479999999999999998866521     1235677776665444457999999


Q ss_pred             ecCCCCch--------HHHHHhhcccCcEEEEEEc
Q psy7829         213 YGGCVSEV--------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       213 ~~~~~~~~--------~~~~~~~LkpgG~l~~~~~  239 (511)
                      +..++-++        ++++.+.|+|+|.+++--+
T Consensus       128 ~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN  162 (218)
T PF05891_consen  128 IQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKEN  162 (218)
T ss_dssp             EES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEec
Confidence            98877554        4789999999999998533

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.30  E-value=2.2e-06  Score=77.43  Aligned_cols=90  Identities=16%  Similarity=0.239  Sum_probs=61.0

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANET  430 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~  430 (511)
                      |.+......++.. .....++.+|||+|||+|.+++.++... . .+|+++|++++.++.+++|+.   ..+++++++|.
T Consensus        35 p~~d~v~e~l~~~-l~~~~~~~~vLDl~~GsG~l~l~~lsr~-a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~  111 (199)
T PRK10909         35 PTTDRVRETLFNW-LAPVIVDARCLDCFAGSGALGLEALSRY-A-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNA  111 (199)
T ss_pred             cCCHHHHHHHHHH-HhhhcCCCEEEEcCCCccHHHHHHHHcC-C-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchH
Confidence            4555555445554 1233568899999999999999754444 2 799999999888877666654   45688888886


Q ss_pred             ccccc---ccchhhhhccc
Q psy7829         431 IEIIP---HILDLCYLNLH  446 (511)
Q Consensus       431 ~~~l~---~~~d~i~~~l~  446 (511)
                      .+.++   ..+|.++.+.+
T Consensus       112 ~~~l~~~~~~fDlV~~DPP  130 (199)
T PRK10909        112 LSFLAQPGTPHNVVFVDPP  130 (199)
T ss_pred             HHHHhhcCCCceEEEECCC
Confidence            65442   23566555544

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.29  E-value=2.7e-06  Score=84.44  Aligned_cols=100  Identities=16%  Similarity=0.194  Sum_probs=80.6

Q ss_pred             CCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCccEEE
Q psy7829         134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYDVIY  212 (511)
Q Consensus       134 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I~  212 (511)
                      +.+|||+.||+|..++.++...+...+|+++|+++.+++.+++|++.++     ..++++++.|+..... ....||+|.
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~-----~~~~~v~~~Da~~~l~~~~~~fDvId  119 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS-----VENIEVPNEDAANVLRYRNRKFHVID  119 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEchhHHHHHHHhCCCCCEEE
Confidence            3689999999999999999875223579999999999999999998864     4478999999875332 125799999


Q ss_pred             ecCCCC--chHHHHHhhcccCcEEEEEE
Q psy7829         213 YGGCVS--EVPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       213 ~~~~~~--~~~~~~~~~LkpgG~l~~~~  238 (511)
                      .++.-.  .+.+.+.+.+++||.|+++.
T Consensus       120 lDPfGs~~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       120 IDPFGTPAPFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             eCCCCCcHHHHHHHHHhcccCCEEEEEe
Confidence            987322  45578889999999999963

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.29  E-value=8.1e-07  Score=78.08  Aligned_cols=85  Identities=16%  Similarity=0.141  Sum_probs=56.8

Q ss_pred             cCCCCCCCCCCHHHHHHHH--HHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-ccc
Q psy7829         346 HGSAPDNGPSSERSIAHIL--DLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNH  422 (511)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~  422 (511)
                      .+..|+....+..+..+--  -.+.++-..-.++||+|||.|.+|..||..+   .+++++|+++..++.+++++. .++
T Consensus        14 a~~DPW~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~~~   90 (201)
T PF05401_consen   14 ANDDPWGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGLPH   90 (201)
T ss_dssp             TSSSGGGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT-SS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCCCC
Confidence            3344444445556654321  1112455556789999999999999999998   799999999999999998877 588


Q ss_pred             ccccccccccc
Q psy7829         423 IDLIANETIEI  433 (511)
Q Consensus       423 v~~i~~d~~~~  433 (511)
                      |+++..+..+.
T Consensus        91 V~~~~~dvp~~  101 (201)
T PF05401_consen   91 VEWIQADVPEF  101 (201)
T ss_dssp             EEEEES-TTT-
T ss_pred             eEEEECcCCCC
Confidence            98887775444

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.28  E-value=2.5e-06  Score=84.70  Aligned_cols=58  Identities=19%  Similarity=0.232  Sum_probs=47.9

Q ss_pred             CCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc---cccccccccccccc
Q psy7829         374 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST---NHIDLIANETIEII  434 (511)
Q Consensus       374 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~---~~v~~i~~d~~~~l  434 (511)
                      +.+|||+|||+|.+++.+++..   .+|+++|++.++++.+++|+..   .|++++.+|..+.+
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~  258 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFT  258 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHH
Confidence            3479999999999999999876   6999999999999888887654   46778888865544

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.27  E-value=2.7e-06  Score=79.91  Aligned_cols=106  Identities=26%  Similarity=0.329  Sum_probs=78.9

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCC-Ccc
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEA-PYD  209 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~-~fD  209 (511)
                      +...+||-||.|.|..+..+.+.. +..+++.+|+++.+++.|++.+...... +..++++++.+|+..... ... +||
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~-~~d~r~~i~~~Dg~~~l~~~~~~~yD  152 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEG-LDDPRVRIIIGDGRKFLKETQEEKYD  152 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTT-GGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccc-cCCCceEEEEhhhHHHHHhccCCccc
Confidence            468899999999999999998764 4578999999999999999987653211 235789999999864221 123 899


Q ss_pred             EEEecCCCC----------chHHHHHhhcccCcEEEEEEc
Q psy7829         210 VIYYGGCVS----------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       210 ~I~~~~~~~----------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      +|+++..-+          .+.+.+.+.|+|||.+++-..
T Consensus       153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~  192 (246)
T PF01564_consen  153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG  192 (246)
T ss_dssp             EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence            999875542          234889999999999998654

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PHA03411 putative methyltransferase; Provisional

Probab=98.26  E-value=2.2e-06  Score=80.07  Aligned_cols=87  Identities=18%  Similarity=0.200  Sum_probs=64.1

Q ss_pred             CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccc
Q psy7829         355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEII  434 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l  434 (511)
                      .||+.+...+.   .....+.+|||+|||+|.+++.+++.. +..+|+++|+++.+++.++++.  ++++++++|..+..
T Consensus        49 fTP~~i~~~f~---~~~~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~--~~v~~v~~D~~e~~  122 (279)
T PHA03411         49 FTPEGLAWDFT---IDAHCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL--PEAEWITSDVFEFE  122 (279)
T ss_pred             cCCHHHHHHHH---hccccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC--cCCEEEECchhhhc
Confidence            35666654432   234456799999999999999888775 3379999999999999988875  46788888876654


Q ss_pred             -cccchhhhhcccC
Q psy7829         435 -PHILDLCYLNLHR  447 (511)
Q Consensus       435 -~~~~d~i~~~l~~  447 (511)
                       +..+|.++.+.+-
T Consensus       123 ~~~kFDlIIsNPPF  136 (279)
T PHA03411        123 SNEKFDVVISNPPF  136 (279)
T ss_pred             ccCCCcEEEEcCCc
Confidence             3457777776543

>PRK00811 spermidine synthase; Provisional

Probab=98.25  E-value=2.7e-06  Score=81.86  Aligned_cols=103  Identities=13%  Similarity=0.147  Sum_probs=73.3

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc--------cccccccccccccccc---ccc
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS--------TNHIDLIANETIEIIP---HIL  438 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~--------~~~v~~i~~d~~~~l~---~~~  438 (511)
                      ..+.+.+||+||||+|..+..+.+.. +..+|+++|+++++++.+++.+.        .++++++.+|+...+.   ..+
T Consensus        73 ~~~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~y  151 (283)
T PRK00811         73 AHPNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSF  151 (283)
T ss_pred             hCCCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcc
Confidence            34567899999999999999988753 33689999999999998887653        4568888888776653   456


Q ss_pred             hhhhhcccCCcEEEEEcCC----ccHHHHHHHHHhCCCcEEEEh
Q psy7829         439 DLCYLNLHRGAKVLEIGSG----SGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       439 d~i~~~l~~~~~vLD~~~g----~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      |.++.+.....     +..    +-.+...+.+.|+|+|.++..
T Consensus       152 DvIi~D~~dp~-----~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        152 DVIIVDSTDPV-----GPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             cEEEECCCCCC-----CchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            76666543221     111    122344667889999988764

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.25  E-value=6.7e-06  Score=73.29  Aligned_cols=97  Identities=28%  Similarity=0.366  Sum_probs=74.9

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC--------
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY--------  202 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--------  202 (511)
                      ++++.+|+|+|+.+|.++..+++..++.+.|+++|+.|-.                ..++|.++++|++...        
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----------------~~~~V~~iq~d~~~~~~~~~l~~~  106 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----------------PIPGVIFLQGDITDEDTLEKLLEA  106 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----------------cCCCceEEeeeccCccHHHHHHHH
Confidence            5689999999999999999999999888889999997642                2456999999997432        


Q ss_pred             CCCCCccEEEecCCC--------Cch---------HHHHHhhcccCcEEEEEEccCCC
Q psy7829         203 LPEAPYDVIYYGGCV--------SEV---------PSRVLNQLKKGGRILAPIGPMDD  243 (511)
Q Consensus       203 ~~~~~fD~I~~~~~~--------~~~---------~~~~~~~LkpgG~l~~~~~~~~~  243 (511)
                      ....++|+|+++.+.        .+.         ++-+...|+|||.+++.+.....
T Consensus       107 l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~  164 (205)
T COG0293         107 LGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED  164 (205)
T ss_pred             cCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC
Confidence            122457999998765        111         14456799999999998765444

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.24  E-value=7.3e-06  Score=81.25  Aligned_cols=105  Identities=15%  Similarity=0.234  Sum_probs=75.0

Q ss_pred             hcCCCCCCEEEEEeccccHHHHHHHHHhCC-CcEEEEEcCCHHHHH---HHHhhccccccccccccccccccccchhhhh
Q psy7829         368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGP-TGHVTGLEHMMDIAI---ESIANISTNHIDLIANETIEIIPHILDLCYL  443 (511)
Q Consensus       368 ~~~~~~~~~vLdiG~G~G~~~~~la~~~~~-~~~v~~id~~~~~~~---~~~~~~~~~~v~~i~~d~~~~l~~~~d~i~~  443 (511)
                      .+..++|++|||+.+++|.-|..+|..+.. ...|+++|++...++   .+.++++..|+.++..|+..........   
T Consensus       151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~---  227 (355)
T COG0144         151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGG---  227 (355)
T ss_pred             HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccccc---
Confidence            478899999999999999999999998854 345699999975555   5666777888777776654332221110   


Q ss_pred             cccCCcEEEEEcC-CccHH-------------------------HHHHHHHhCCCcEEE
Q psy7829         444 NLHRGAKVLEIGS-GSGYL-------------------------ATLMAHLVGPTGHVT  476 (511)
Q Consensus       444 ~l~~~~~vLD~~~-g~g~~-------------------------~~~l~~~l~~~g~v~  476 (511)
                       .+.+..++|..| |+|.+                         ....++.++|||.++
T Consensus       228 -~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LV  285 (355)
T COG0144         228 -EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLV  285 (355)
T ss_pred             -CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence             023456788888 89988                         334456789999865

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.23  E-value=3.9e-06  Score=84.72  Aligned_cols=108  Identities=23%  Similarity=0.355  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccccccc
Q psy7829         357 ERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEI  433 (511)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~  433 (511)
                      ......+++.  +...+++++||+=||.|.+++.+|+..   .+|+|+|++++.++.|.+|..   ..|+.++.+++.+.
T Consensus       279 ekl~~~a~~~--~~~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~  353 (432)
T COG2265         279 EKLYETALEW--LELAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEF  353 (432)
T ss_pred             HHHHHHHHHH--HhhcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHH
Confidence            3444455555  666788999999999999999999777   899999999877776666554   56677777776555


Q ss_pred             ccc-----cchhhhhcccCCc---------------EEEEEcCCccHHHHHHHHHh
Q psy7829         434 IPH-----ILDLCYLNLHRGA---------------KVLEIGSGSGYLATLMAHLV  469 (511)
Q Consensus       434 l~~-----~~d~i~~~l~~~~---------------~vLD~~~g~g~~~~~l~~~l  469 (511)
                      .+.     .++.++.+.+..+               +|+.+.|++.+++..+....
T Consensus       354 ~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP~TlaRDl~~L~  409 (432)
T COG2265         354 TPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLKPKRIVYVSCNPATLARDLAILA  409 (432)
T ss_pred             hhhccccCCCCEEEECCCCCCCCHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHH
Confidence            443     2233333332211               45556666666666555443

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.23  E-value=3.1e-06  Score=80.86  Aligned_cols=72  Identities=13%  Similarity=0.244  Sum_probs=58.8

Q ss_pred             HHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc-cccccccccccc
Q psy7829         359 SIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST-NHIDLIANETIE  432 (511)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~-~~v~~i~~d~~~  432 (511)
                      ....+++.  +.+.++..++|.+||.|..|..+++.++++++|+|+|++++++..+.+++.. .++++++++..+
T Consensus         7 ll~Evl~~--L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~   79 (296)
T PRK00050          7 LLDEVVDA--LAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSN   79 (296)
T ss_pred             cHHHHHHh--hCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHH
Confidence            34556666  6778899999999999999999999986689999999999999988877643 567777776443

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.22  E-value=7.6e-06  Score=76.08  Aligned_cols=105  Identities=20%  Similarity=0.288  Sum_probs=69.7

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-ccccccccccccccc--cccchhhhhcc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNHIDLIANETIEII--PHILDLCYLNL  445 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~~l--~~~~d~i~~~l  445 (511)
                      +...++.+|||+|||+|..+..+++..++.++++++|+++.++..+.++.. ..++.++.+|..+..  +..+|.+....
T Consensus        35 ~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~  114 (223)
T TIGR01934        35 IGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAF  114 (223)
T ss_pred             hccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEee
Confidence            455588999999999999999999887433799999999999888877764 345677666654422  12233332211


Q ss_pred             cCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         446 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       446 ~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                           .+.--...-.+...+.+.++|+|.++.+
T Consensus       115 -----~~~~~~~~~~~l~~~~~~L~~gG~l~~~  142 (223)
T TIGR01934       115 -----GLRNVTDIQKALREMYRVLKPGGRLVIL  142 (223)
T ss_pred             -----eeCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence                 0000112334456677888999988764

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK01581 speE spermidine synthase; Validated

Probab=98.22  E-value=1.6e-05  Score=77.43  Aligned_cols=109  Identities=14%  Similarity=0.119  Sum_probs=72.9

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhh----------cccccccccccccccccc---
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIAN----------ISTNHIDLIANETIEIIP---  435 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~----------~~~~~v~~i~~d~~~~l~---  435 (511)
                      .......+||+||||+|+.+..+.+.. +..+|+++|+++++++.+++.          +..++++++.+|+.+.+.   
T Consensus       146 ~~h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~  224 (374)
T PRK01581        146 SKVIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPS  224 (374)
T ss_pred             HhCCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcC
Confidence            445567899999999999888877643 457999999999999988852          234678888888777653   


Q ss_pred             ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         436 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       436 ~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..+|.++.++.....-.--.--+-.+...+.+.|+|+|.++.-
T Consensus       225 ~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q  267 (374)
T PRK01581        225 SLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ  267 (374)
T ss_pred             CCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            3466666554322110000001223455677889999987765

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.22  E-value=4.7e-06  Score=80.61  Aligned_cols=100  Identities=16%  Similarity=0.082  Sum_probs=60.2

Q ss_pred             CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc--cccccccccccc-ccccchhhhhcccCCc
Q psy7829         373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN--HIDLIANETIEI-IPHILDLCYLNLHRGA  449 (511)
Q Consensus       373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~--~v~~i~~d~~~~-l~~~~d~i~~~l~~~~  449 (511)
                      ++.+|||+|||+|..+..+++..   .+|+|+|+++.+++.++++....  ++++...|.... ++..+|.++....-  
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl--  194 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVL--  194 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchh--
Confidence            45599999999999999999753   79999999998888776655433  344444442211 12334433221100  


Q ss_pred             EEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         450 KVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       450 ~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..++- .....+...+.+.++|+|.++.+
T Consensus       195 ~~l~~-~~~~~~l~~~~~~LkpgG~~l~v  222 (287)
T PRK12335        195 MFLNR-ERIPAIIKNMQEHTNPGGYNLIV  222 (287)
T ss_pred             hhCCH-HHHHHHHHHHHHhcCCCcEEEEE
Confidence            00000 01123456677888999985544

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.21  E-value=8.1e-06  Score=75.01  Aligned_cols=99  Identities=22%  Similarity=0.327  Sum_probs=76.4

Q ss_pred             CCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHH---hhccccccccccccccccccc-----cchhhhhcc
Q psy7829         374 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESI---ANISTNHIDLIANETIEIIPH-----ILDLCYLNL  445 (511)
Q Consensus       374 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~---~~~~~~~v~~i~~d~~~~l~~-----~~d~i~~~l  445 (511)
                      ...+||||||.|.+.+.+|+.- |+..++|||+....+.++.   ...+..|+.+++.|+.+.++.     .++.++.+.
T Consensus        49 ~pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F  127 (227)
T COG0220          49 APIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF  127 (227)
T ss_pred             CcEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence            4689999999999999999987 8899999999865555544   445566899999998776542     556666666


Q ss_pred             cCCc--------EEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         446 HRGA--------KVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       446 ~~~~--------~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +..|        +++     .-.+...+++.|+|+|.+...
T Consensus       128 PDPWpKkRH~KRRl~-----~~~fl~~~a~~Lk~gG~l~~a  163 (227)
T COG0220         128 PDPWPKKRHHKRRLT-----QPEFLKLYARKLKPGGVLHFA  163 (227)
T ss_pred             CCCCCCccccccccC-----CHHHHHHHHHHccCCCEEEEE
Confidence            5544        555     345678889999999999877

>PHA03412 putative methyltransferase; Provisional

Probab=98.21  E-value=4.3e-06  Score=76.37  Aligned_cols=89  Identities=13%  Similarity=0.173  Sum_probs=65.6

Q ss_pred             CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhC--CCcEEEEEcCCHHHHHHHHhhccccccccccccccc
Q psy7829         355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVG--PTGHVTGLEHMMDIAIESIANISTNHIDLIANETIE  432 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~--~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~  432 (511)
                      .||..+++.+..   ....+.+|||+|||+|.+++.+++.+.  +..+|+++|+++.+++.+++|..  ++.++++|...
T Consensus        34 fTP~~iAr~~~i---~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~--~~~~~~~D~~~  108 (241)
T PHA03412         34 FTPIGLARDFTI---DACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP--EATWINADALT  108 (241)
T ss_pred             CCCHHHHHHHHH---hccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc--CCEEEEcchhc
Confidence            366667665543   223478999999999999999998642  34699999999999999998863  47777777543


Q ss_pred             c-ccccchhhhhcccCC
Q psy7829         433 I-IPHILDLCYLNLHRG  448 (511)
Q Consensus       433 ~-l~~~~d~i~~~l~~~  448 (511)
                      . .+..+|.++.|.+-.
T Consensus       109 ~~~~~~FDlIIsNPPY~  125 (241)
T PHA03412        109 TEFDTLFDMAISNPPFG  125 (241)
T ss_pred             ccccCCccEEEECCCCC
Confidence            2 244688888887654

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.21  E-value=5e-06  Score=82.89  Aligned_cols=58  Identities=19%  Similarity=0.226  Sum_probs=48.1

Q ss_pred             CCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccccccc
Q psy7829         374 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEII  434 (511)
Q Consensus       374 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~l  434 (511)
                      +.+|||++||+|.+++.+++..   .+|+++|++..+++.+++|+.   ..|++++.+|..+.+
T Consensus       207 ~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l  267 (362)
T PRK05031        207 KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFT  267 (362)
T ss_pred             CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHH
Confidence            3579999999999999999876   699999999999988777764   456788888876554

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.20  E-value=1.9e-07  Score=74.83  Aligned_cols=92  Identities=16%  Similarity=0.259  Sum_probs=48.9

Q ss_pred             EEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc---cc---ccccccccccccc-ccchhhhhcccCCcE
Q psy7829         378 LEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST---NH---IDLIANETIEIIP-HILDLCYLNLHRGAK  450 (511)
Q Consensus       378 LdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~---~~---v~~i~~d~~~~l~-~~~d~i~~~l~~~~~  450 (511)
                      ||||||+|.++..+.... +..+++++|+++.++..+++++..   .+   +++...+..+... ..+|.++...--.. 
T Consensus         1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~-   78 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH-   78 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred             CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhh-
Confidence            799999999999999887 679999999999998766655542   11   2222222222111 25555544321111 


Q ss_pred             EEEEcCCccHHHHHHHHHhCCCcEE
Q psy7829         451 VLEIGSGSGYLATLMAHLVGPTGHV  475 (511)
Q Consensus       451 vLD~~~g~g~~~~~l~~~l~~~g~v  475 (511)
                      +    -..-.+...+.+.|+|||.+
T Consensus        79 l----~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   79 L----EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             -----S-HHHHHHHHTTT-TSS-EE
T ss_pred             h----hhHHHHHHHHHHHcCCCCCC
Confidence            1    22334455667778888864

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>KOG1541|consensus

Probab=98.20  E-value=6.2e-06  Score=72.92  Aligned_cols=128  Identities=14%  Similarity=0.161  Sum_probs=80.3

Q ss_pred             CCHHHHHHHHHHhhcCCCC--CCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccc---
Q psy7829         355 SSERSIAHILDLCYLNLHR--GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANE---  429 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~--~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d---  429 (511)
                      ...+...+.+++  +.+++  ..-|||||||||-.+..+...   .-..+|+|++++|...+.+. +.. -+++.+|   
T Consensus        32 IQ~em~eRaLEL--Lalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~-e~e-gdlil~DMG~  104 (270)
T KOG1541|consen   32 IQAEMAERALEL--LALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVER-ELE-GDLILCDMGE  104 (270)
T ss_pred             ehHHHHHHHHHH--hhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHh-hhh-cCeeeeecCC
Confidence            355778888888  55555  778999999999999888643   26799999999999998862 111 3444444   


Q ss_pred             ccccccccchhhhhcccCCcEEEEEcCCc---cHH--------HHHHHHHhCCCcEEEEh-----HHHHHHHHHHHHhcC
Q psy7829         430 TIEIIPHILDLCYLNLHRGAKVLEIGSGS---GYL--------ATLMAHLVGPTGHVTGL-----EHMMDIAIESIANIS  493 (511)
Q Consensus       430 ~~~~l~~~~d~i~~~l~~~~~vLD~~~g~---g~~--------~~~l~~~l~~~g~v~~~-----~~ml~~a~~~~~~~~  493 (511)
                      .+.+-+..||.+...     -.+.+-|+.   ...        ...++..++++++.+.-     +.-++...+.+...|
T Consensus       105 GlpfrpGtFDg~ISI-----SAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aG  179 (270)
T KOG1541|consen  105 GLPFRPGTFDGVISI-----SAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAG  179 (270)
T ss_pred             CCCCCCCccceEEEe-----eeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhc
Confidence            444445566654331     122344431   111        22356667788876654     555555555555555


Q ss_pred             C
Q psy7829         494 T  494 (511)
Q Consensus       494 ~  494 (511)
                      +
T Consensus       180 F  180 (270)
T KOG1541|consen  180 F  180 (270)
T ss_pred             c
Confidence            4

>KOG1540|consensus

Probab=98.20  E-value=7.6e-06  Score=74.12  Aligned_cols=104  Identities=16%  Similarity=0.226  Sum_probs=71.3

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCC-----cEEEEEcCCHHHHHHHHhhc---c---cccccccccccccccc--
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPT-----GHVTGLEHMMDIAIESIANI---S---TNHIDLIANETIEIIP--  435 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~-----~~v~~id~~~~~~~~~~~~~---~---~~~v~~i~~d~~~~l~--  435 (511)
                      +....+.++||++||||-++..+.+.++..     ++|+..|++++|...+.++.   +   ...+.++++|+.+ +|  
T Consensus        96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~-LpFd  174 (296)
T KOG1540|consen   96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED-LPFD  174 (296)
T ss_pred             cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc-CCCC
Confidence            677788999999999999999999988433     89999999999999876665   2   2336777777644 33  


Q ss_pred             -ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         436 -HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       436 -~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                       ..+|..-..  .   -+--++-.-....+.++.|||||++..+
T Consensus       175 d~s~D~yTia--f---GIRN~th~~k~l~EAYRVLKpGGrf~cL  213 (296)
T KOG1540|consen  175 DDSFDAYTIA--F---GIRNVTHIQKALREAYRVLKPGGRFSCL  213 (296)
T ss_pred             CCcceeEEEe--c---ceecCCCHHHHHHHHHHhcCCCcEEEEE
Confidence             112211100  0   0111122333457888999999999877

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.20  E-value=3.9e-06  Score=83.23  Aligned_cols=67  Identities=21%  Similarity=0.409  Sum_probs=46.3

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccc
Q psy7829         358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANET  430 (511)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~  430 (511)
                      ..+..++.+  +...++ +|||+-||+|.+++.+|..+   .+|+|||+++++++.|++|..   ..|++++.+++
T Consensus       184 ~l~~~~~~~--l~~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~  253 (352)
T PF05958_consen  184 KLYEQALEW--LDLSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA  253 (352)
T ss_dssp             HHHHHHHHH--CTT-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred             HHHHHHHHH--hhcCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence            344444444  555555 89999999999999999877   799999999998888877766   45566765543

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>KOG0820|consensus

Probab=98.18  E-value=5.8e-06  Score=75.51  Aligned_cols=86  Identities=20%  Similarity=0.267  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----ccccccccccccc
Q psy7829         357 ERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETIE  432 (511)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~~  432 (511)
                      +..+..++.-  .++++++.|||+|.|||.+|..+-+..   .+|+|+|+|+.++..-.++..    ....+++.+|.+.
T Consensus        44 p~v~~~I~~k--a~~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK  118 (315)
T KOG0820|consen   44 PLVIDQIVEK--ADLKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLK  118 (315)
T ss_pred             HHHHHHHHhc--cCCCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccccc
Confidence            4566666665  899999999999999999999998876   899999999999887666654    2457888898877


Q ss_pred             cccccchhhhhcccC
Q psy7829         433 IIPHILDLCYLNLHR  447 (511)
Q Consensus       433 ~l~~~~d~i~~~l~~  447 (511)
                      .-...+|.+..|++.
T Consensus       119 ~d~P~fd~cVsNlPy  133 (315)
T KOG0820|consen  119 TDLPRFDGCVSNLPY  133 (315)
T ss_pred             CCCcccceeeccCCc
Confidence            665667777776654

>PRK06202 hypothetical protein; Provisional

Probab=98.18  E-value=6.2e-06  Score=77.23  Aligned_cols=59  Identities=24%  Similarity=0.232  Sum_probs=47.2

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHh---CCCcEEEEEcCCHHHHHHHHhhccccccccccc
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLV---GPTGHVTGLEHMMDIAIESIANISTNHIDLIAN  428 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~---~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~  428 (511)
                      ...++.+|||+|||+|.++..+++..   +++.+|+|+|+++++++.++++....++.+...
T Consensus        57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~  118 (232)
T PRK06202         57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQA  118 (232)
T ss_pred             CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEE
Confidence            33577899999999999999988653   455699999999999999988876666655443

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.17  E-value=3.8e-06  Score=77.93  Aligned_cols=58  Identities=17%  Similarity=0.304  Sum_probs=46.9

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----ccccccccccc
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETI  431 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~  431 (511)
                      ..++.+|||+|||+|.++..+++..   .+|+|+|++++++..++++...    .++++..+|..
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~  114 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLL  114 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence            5678999999999999999998753   7999999999999988877652    35667666543

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>KOG2899|consensus

Probab=98.17  E-value=1.3e-05  Score=71.95  Aligned_cols=49  Identities=22%  Similarity=0.379  Sum_probs=44.3

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS  419 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~  419 (511)
                      ..-.+..+|||||-+|.+|+.+|+.+++ ..|+|+||++..++.|+++++
T Consensus        55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r  103 (288)
T KOG2899|consen   55 DWFEPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIR  103 (288)
T ss_pred             cccCcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhcc
Confidence            4456788999999999999999999976 679999999999999999887

>TIGR03438 probable methyltransferase

Probab=98.17  E-value=7.2e-06  Score=79.80  Aligned_cols=102  Identities=19%  Similarity=0.224  Sum_probs=64.5

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc--cc--cccccccccccccccchhhhhccc
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST--NH--IDLIANETIEIIPHILDLCYLNLH  446 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~--~~--v~~i~~d~~~~l~~~~d~i~~~l~  446 (511)
                      +.++.+|||+|||+|..+..+++.+....+++++|++++|++.+.+++..  ++  +..+++|..+..+.....    ..
T Consensus        61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~----~~  136 (301)
T TIGR03438        61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEP----AA  136 (301)
T ss_pred             hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhccc----cc
Confidence            45778999999999999999998873247899999999999888877642  33  445677654322111000    00


Q ss_pred             CCcEEEEEcCCcc--------HHHHHHHHHhCCCcEEE
Q psy7829         447 RGAKVLEIGSGSG--------YLATLMAHLVGPTGHVT  476 (511)
Q Consensus       447 ~~~~vLD~~~g~g--------~~~~~l~~~l~~~g~v~  476 (511)
                      ....++-.|...|        .+...+++.|+|+|.++
T Consensus       137 ~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~l  174 (301)
T TIGR03438       137 GRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLL  174 (301)
T ss_pred             CCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            1111221221122        23456778899999876

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK05785 hypothetical protein; Provisional

Probab=98.15  E-value=9.5e-06  Score=75.39  Aligned_cols=44  Identities=20%  Similarity=0.276  Sum_probs=38.9

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhh
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIAN  417 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~  417 (511)
                      .++.+|||+|||||.++..+++..+  .+|+|+|++++|++.++++
T Consensus        50 ~~~~~VLDlGcGtG~~~~~l~~~~~--~~v~gvD~S~~Ml~~a~~~   93 (226)
T PRK05785         50 GRPKKVLDVAAGKGELSYHFKKVFK--YYVVALDYAENMLKMNLVA   93 (226)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhcC--CEEEEECCCHHHHHHHHhc
Confidence            4578999999999999999998763  7999999999999988765

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.14  E-value=2.5e-05  Score=82.30  Aligned_cols=103  Identities=9%  Similarity=0.057  Sum_probs=69.9

Q ss_pred             CcccchhHHHHHHHHHHhhcCC-----CCCEEEEEcCCccHHHHHHHHHhCC-------CceEEEEeCCHHHHHHHHHHH
Q psy7829         111 AGVMNAPNQIADAAENLKLHLV-----DGAKVLDLGSGSGYQTCVFAHMVGP-------TGKVIGVEHIPELIEASLRNI  178 (511)
Q Consensus       111 ~~~~~~p~~~~~~~~~l~~~~~-----~~~~vLDiG~G~G~~~~~la~~~~~-------~~~v~~iD~~~~~~~~a~~~~  178 (511)
                      |+..+.+.+...|++.+.....     ...+|||.|||+|.+...+++....       ...++|+|+++.++..++.++
T Consensus         4 GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l   83 (524)
T TIGR02987         4 GTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL   83 (524)
T ss_pred             cccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence            3444455677777776642211     3458999999999999988877621       257899999999999999998


Q ss_pred             hccCCCcCCCCCeEEEEccCCCC---C--CCCCCccEEEecCCCC
Q psy7829         179 SKGNKDLLDSGRVRIVEADAREG---Y--LPEAPYDVIYYGGCVS  218 (511)
Q Consensus       179 ~~~~~~~~~~~~v~~~~~d~~~~---~--~~~~~fD~I~~~~~~~  218 (511)
                      ...+     ...+.+...|....   .  ...+.||+|+.|+|+-
T Consensus        84 ~~~~-----~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~  123 (524)
T TIGR02987        84 GEFA-----LLEINVINFNSLSYVLLNIESYLDLFDIVITNPPYG  123 (524)
T ss_pred             hhcC-----CCCceeeecccccccccccccccCcccEEEeCCCcc
Confidence            7643     11344555553321   1  1125799999998873

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.13  E-value=8.8e-06  Score=73.59  Aligned_cols=99  Identities=29%  Similarity=0.293  Sum_probs=80.3

Q ss_pred             CCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCC-ccEEE
Q psy7829         134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAP-YDVIY  212 (511)
Q Consensus       134 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~I~  212 (511)
                      +.+++|||+|.|.-++.+|-.. |+.+|+.+|.....+...++-..+.     +.+|++++++.+++.... .. ||+|.
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~eL-----~L~nv~i~~~RaE~~~~~-~~~~D~vt  140 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKKEL-----GLENVEIVHGRAEEFGQE-KKQYDVVT  140 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHHHHHHHh-----CCCCeEEehhhHhhcccc-cccCcEEE
Confidence            6899999999999999999665 8888999999999998888887774     578999999998764432 23 99999


Q ss_pred             ecCCC--CchHHHHHhhcccCcEEEEEEc
Q psy7829         213 YGGCV--SEVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       213 ~~~~~--~~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      +-+..  ..+..-+..++|+||.+++..+
T Consensus       141 sRAva~L~~l~e~~~pllk~~g~~~~~k~  169 (215)
T COG0357         141 SRAVASLNVLLELCLPLLKVGGGFLAYKG  169 (215)
T ss_pred             eehccchHHHHHHHHHhcccCCcchhhhH
Confidence            87654  4455778899999999876433

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.12  E-value=5.6e-05  Score=70.37  Aligned_cols=100  Identities=15%  Similarity=0.175  Sum_probs=78.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHhccCCCcCCCCC-eEEEEccCCCCC--C-CCCC
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGP-TGKVIGVEHIPELIEASLRNISKGNKDLLDSGR-VRIVEADAREGY--L-PEAP  207 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~-v~~~~~d~~~~~--~-~~~~  207 (511)
                      ..-+||||.||.|....-....... ...+...|.|+..++..++.++..|     ..+ ++|.++|+++..  . ....
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g-----L~~i~~f~~~dAfd~~~l~~l~p~  209 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG-----LEDIARFEQGDAFDRDSLAALDPA  209 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC-----CccceEEEecCCCCHhHhhccCCC
Confidence            4568999999999998887777632 2678999999999999999999875     444 499999998531  1 1244


Q ss_pred             ccEEEecCCCCchH---------HHHHhhcccCcEEEEE
Q psy7829         208 YDVIYYGGCVSEVP---------SRVLNQLKKGGRILAP  237 (511)
Q Consensus       208 fD~I~~~~~~~~~~---------~~~~~~LkpgG~l~~~  237 (511)
                      .++++++..++-++         ..+.+.+.|||.++..
T Consensus       210 P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT  248 (311)
T PF12147_consen  210 PTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYT  248 (311)
T ss_pred             CCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence            79999887765443         4577889999999874

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.11  E-value=9e-06  Score=72.09  Aligned_cols=94  Identities=18%  Similarity=0.196  Sum_probs=58.8

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCC
Q psy7829         120 IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAR  199 (511)
Q Consensus       120 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  199 (511)
                      +..+++.+. ..++...|-|+|||.+.++..+..    .-+|+.+|+-..                    |-.+..+|+.
T Consensus        60 vd~iI~~l~-~~~~~~viaD~GCGdA~la~~~~~----~~~V~SfDLva~--------------------n~~Vtacdia  114 (219)
T PF05148_consen   60 VDVIIEWLK-KRPKSLVIADFGCGDAKLAKAVPN----KHKVHSFDLVAP--------------------NPRVTACDIA  114 (219)
T ss_dssp             HHHHHHHHC-TS-TTS-EEEES-TT-HHHHH--S-------EEEEESS-S--------------------STTEEES-TT
T ss_pred             HHHHHHHHH-hcCCCEEEEECCCchHHHHHhccc----CceEEEeeccCC--------------------CCCEEEecCc
Confidence            355677775 234467899999999988865533    335999998532                    2246779998


Q ss_pred             CCCCCCCCccEEEecCCC-----CchHHHHHhhcccCcEEEEEE
Q psy7829         200 EGYLPEAPYDVIYYGGCV-----SEVPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       200 ~~~~~~~~fD~I~~~~~~-----~~~~~~~~~~LkpgG~l~~~~  238 (511)
                      ..+.++++.|++++..++     ..+..++.|.|||||.|.+.-
T Consensus       115 ~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAE  158 (219)
T PF05148_consen  115 NVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAE  158 (219)
T ss_dssp             S-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEE
Confidence            777677999999887665     345689999999999999853

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>KOG2187|consensus

Probab=98.11  E-value=6.4e-06  Score=82.05  Aligned_cols=116  Identities=16%  Similarity=0.136  Sum_probs=82.8

Q ss_pred             hHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829         117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA  196 (511)
Q Consensus       117 p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  196 (511)
                      +.++..+-+++.  +..+..+||++||||.++..+|+...+   |+|+|+++++++.|+.|+..+|     ..|.+|+++
T Consensus       369 evLys~i~e~~~--l~~~k~llDv~CGTG~iglala~~~~~---ViGvEi~~~aV~dA~~nA~~Ng-----isNa~Fi~g  438 (534)
T KOG2187|consen  369 EVLYSTIGEWAG--LPADKTLLDVCCGTGTIGLALARGVKR---VIGVEISPDAVEDAEKNAQING-----ISNATFIVG  438 (534)
T ss_pred             HHHHHHHHHHhC--CCCCcEEEEEeecCCceehhhhccccc---eeeeecChhhcchhhhcchhcC-----ccceeeeec
Confidence            344555556654  777889999999999999999998754   9999999999999999999985     679999999


Q ss_pred             cCCCCCCC-----CCCcc-EEEecCCCCch----HHHHHhhcccCcEEEEEEccCC
Q psy7829         197 DAREGYLP-----EAPYD-VIYYGGCVSEV----PSRVLNQLKKGGRILAPIGPMD  242 (511)
Q Consensus       197 d~~~~~~~-----~~~fD-~I~~~~~~~~~----~~~~~~~LkpgG~l~~~~~~~~  242 (511)
                      -+++.+..     .++=+ +++++.+-..+    .+.+.+.-+|--.+++++.+..
T Consensus       439 qaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~t  494 (534)
T KOG2187|consen  439 QAEDLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPHT  494 (534)
T ss_pred             chhhccchhcccCCCCCceEEEECCCcccccHHHHHHHHhccCccceEEEEcCHHH
Confidence            65543321     12335 55666554332    2344444447777777776553

>KOG3420|consensus

Probab=98.11  E-value=3.3e-06  Score=69.37  Aligned_cols=99  Identities=20%  Similarity=0.237  Sum_probs=68.5

Q ss_pred             CCCCCCHHHHHHHHHHhhcC--CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc--cccccc
Q psy7829         351 DNGPSSERSIAHILDLCYLN--LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST--NHIDLI  426 (511)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~--~~v~~i  426 (511)
                      ++.|..|..++.|+....--  --+|.+++|+|||+|.+++..+..  .+..|+|+|++++..+-..+|.+.  -+++++
T Consensus        24 EQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeEfEvqidlL  101 (185)
T KOG3420|consen   24 EQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEEFEVQIDLL  101 (185)
T ss_pred             hhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHHhhhhhhee
Confidence            44577888888887763322  237899999999999999766543  347899999999888877666652  335777


Q ss_pred             ccccccc--ccccchhhhhcccCCcEE
Q psy7829         427 ANETIEI--IPHILDLCYLNLHRGAKV  451 (511)
Q Consensus       427 ~~d~~~~--l~~~~d~i~~~l~~~~~v  451 (511)
                      +.+....  ....+|....|.+.|.+.
T Consensus       102 qcdildle~~~g~fDtaviNppFGTk~  128 (185)
T KOG3420|consen  102 QCDILDLELKGGIFDTAVINPPFGTKK  128 (185)
T ss_pred             eeeccchhccCCeEeeEEecCCCCccc
Confidence            7764333  235667666666655543

>KOG2352|consensus

Probab=98.09  E-value=0.00019  Score=71.73  Aligned_cols=101  Identities=17%  Similarity=0.271  Sum_probs=76.5

Q ss_pred             cCCCCC-EEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCc
Q psy7829         130 HLVDGA-KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPY  208 (511)
Q Consensus       130 ~~~~~~-~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  208 (511)
                      .+.+-. ++|-+|||.-.++..+-+-.  ...++.+|+|+..++.....-.+      ..+-..+...|......++++|
T Consensus        44 ~~~p~~~~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~~------~~~~~~~~~~d~~~l~fedESF  115 (482)
T KOG2352|consen   44 YLSPSDFKILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNAK------ERPEMQMVEMDMDQLVFEDESF  115 (482)
T ss_pred             hhchhhceeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhcccc------CCcceEEEEecchhccCCCcce
Confidence            345666 99999999998888776654  34599999999998887765432      2445889999988777777899


Q ss_pred             cEEEecCCCCch----------------HHHHHhhcccCcEEEEEE
Q psy7829         209 DVIYYGGCVSEV----------------PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       209 D~I~~~~~~~~~----------------~~~~~~~LkpgG~l~~~~  238 (511)
                      |+|+.-+.+..+                ..++.+.|+|||+++...
T Consensus       116 diVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt  161 (482)
T KOG2352|consen  116 DIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT  161 (482)
T ss_pred             eEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence            999876655322                267899999999987643

>PLN02366 spermidine synthase

Probab=98.09  E-value=1.1e-05  Score=78.18  Aligned_cols=106  Identities=15%  Similarity=0.101  Sum_probs=72.7

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-------cccccccccccccccc----ccc
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-------TNHIDLIANETIEIIP----HIL  438 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-------~~~v~~i~~d~~~~l~----~~~  438 (511)
                      ..+...+||+||||.|..+..+++.- +-.+|+.+|+++++++.+++.+.       .++++++.+|+.+.+.    ..+
T Consensus        88 ~~~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~y  166 (308)
T PLN02366         88 SIPNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTY  166 (308)
T ss_pred             hCCCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCC
Confidence            34678899999999999999998753 34689999999999888877653       3568888888766543    346


Q ss_pred             hhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829         439 DLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       439 d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~  477 (511)
                      |.++.+....... ...-.+-.+...+.+.|+|+|.++.
T Consensus       167 DvIi~D~~dp~~~-~~~L~t~ef~~~~~~~L~pgGvlv~  204 (308)
T PLN02366        167 DAIIVDSSDPVGP-AQELFEKPFFESVARALRPGGVVCT  204 (308)
T ss_pred             CEEEEcCCCCCCc-hhhhhHHHHHHHHHHhcCCCcEEEE
Confidence            6666544332100 0000122345567788999999875

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.09  E-value=3.8e-05  Score=67.19  Aligned_cols=114  Identities=28%  Similarity=0.361  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHh-hcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829         118 NQIADAAENLK-LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA  196 (511)
Q Consensus       118 ~~~~~~~~~l~-~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  196 (511)
                      .+.+.++..|. ..+++|.+||=+|+.+|....+++...+ .+.++++|.|+......-..+++       -+|+-.+..
T Consensus        60 KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~-------R~Ni~PIL~  131 (231)
T COG1889          60 KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK-------RPNIIPILE  131 (231)
T ss_pred             HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh-------CCCceeeec
Confidence            46666776665 3578999999999999999999999985 89999999998876665555444       348889999


Q ss_pred             cCCCCCC---CCCCccEEEecCCCCc----hHHHHHhhcccCcEEEEEEc
Q psy7829         197 DAREGYL---PEAPYDVIYYGGCVSE----VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       197 d~~~~~~---~~~~fD~I~~~~~~~~----~~~~~~~~LkpgG~l~~~~~  239 (511)
                      |+..+..   --+..|+|+.+-+-+.    +..++...||+||.+++.+-
T Consensus       132 DA~~P~~Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iK  181 (231)
T COG1889         132 DARKPEKYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIAIK  181 (231)
T ss_pred             ccCCcHHhhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEEEE
Confidence            9975322   1256899999877654    23678889999999888653

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.08  E-value=1.8e-05  Score=76.59  Aligned_cols=48  Identities=23%  Similarity=0.221  Sum_probs=40.9

Q ss_pred             CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc
Q psy7829         373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN  421 (511)
Q Consensus       373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~  421 (511)
                      .+.++||||||+|.+...++... ++.+++|+|+++..++.+++|+..+
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~N  161 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISAN  161 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhc
Confidence            56899999999998888777765 4589999999999999888887765

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.08  E-value=6.4e-06  Score=66.15  Aligned_cols=56  Identities=18%  Similarity=0.434  Sum_probs=42.5

Q ss_pred             EEEEeccccHHHHHHHHHh--CCCcEEEEEcCCHHHHHHHHhhccc--cccccccccccc
Q psy7829         377 VLEIGSGSGYLATLMAHLV--GPTGHVTGLEHMMDIAIESIANIST--NHIDLIANETIE  432 (511)
Q Consensus       377 vLdiG~G~G~~~~~la~~~--~~~~~v~~id~~~~~~~~~~~~~~~--~~v~~i~~d~~~  432 (511)
                      |||+|||+|..+..+++.+  +|+.+++++|+++++++.++++...  .+++++++|..+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~   60 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARD   60 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTC
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhH
Confidence            7999999999999999887  4458999999999999998887742  367777777644

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.07  E-value=2.1e-05  Score=71.29  Aligned_cols=114  Identities=24%  Similarity=0.366  Sum_probs=68.9

Q ss_pred             hHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhc-------cCCCcCCCC
Q psy7829         117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISK-------GNKDLLDSG  189 (511)
Q Consensus       117 p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-------~~~~~~~~~  189 (511)
                      |.....+++.+.  +.+++.++|+|||.|......|... +-.+++|||+.+...+.|+...+.       .|   ....
T Consensus        28 ~~~~~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g---~~~~  101 (205)
T PF08123_consen   28 PEFVSKILDELN--LTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYG---KRPG  101 (205)
T ss_dssp             HHHHHHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCT---B---
T ss_pred             HHHHHHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhh---cccc
Confidence            445566777775  7889999999999999998888776 345699999999998888754432       22   1345


Q ss_pred             CeEEEEccCCCCCCC---CCCccEEEecCCCCc--h---HHHHHhhcccCcEEEE
Q psy7829         190 RVRIVEADAREGYLP---EAPYDVIYYGGCVSE--V---PSRVLNQLKKGGRILA  236 (511)
Q Consensus       190 ~v~~~~~d~~~~~~~---~~~fD~I~~~~~~~~--~---~~~~~~~LkpgG~l~~  236 (511)
                      ++++..+|+.+....   -..-|+|++++.+-.  +   +.+....||+|-+++.
T Consensus       102 ~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  102 KVELIHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIS  156 (205)
T ss_dssp             EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred             cceeeccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEE
Confidence            788999997642110   134699999877632  2   2456677899888764

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.07  E-value=7.1e-06  Score=73.21  Aligned_cols=140  Identities=16%  Similarity=0.159  Sum_probs=91.7

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhh-----ccccccccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIAN-----ISTNHIDLIANET  430 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~-----~~~~~v~~i~~d~  430 (511)
                      +-+++.+-...  ..++.|.+|||.++|-||.++..++...  .+|+++|.++..++.|.-|     +...+++++.+|+
T Consensus       119 P~~Dt~~Kv~~--V~~~~G~rVLDtC~GLGYtAi~a~~rGA--~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~  194 (287)
T COG2521         119 PLEDTLAKVEL--VKVKRGERVLDTCTGLGYTAIEALERGA--IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDA  194 (287)
T ss_pred             cHHHHHhhhhe--eccccCCEeeeeccCccHHHHHHHHcCC--cEEEEEeeCCCeEEeeccCCCCccccccccEEecccH
Confidence            33444443443  6678899999999999999999988762  5999999997776654332     3334689999998


Q ss_pred             cccccc----cchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh----------HHHHHHHHHHHHhcCCCc
Q psy7829         431 IEIIPH----ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL----------EHMMDIAIESIANISTNH  496 (511)
Q Consensus       431 ~~~l~~----~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~----------~~ml~~a~~~~~~~~~~~  496 (511)
                      .+.++.    .||.+.-+.+.-...=.+  -+-.+=.++++.|+|||++.-+          ..+..-..+++.+.|+.+
T Consensus       195 ~e~V~~~~D~sfDaIiHDPPRfS~AgeL--YseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~  272 (287)
T COG2521         195 YEVVKDFDDESFDAIIHDPPRFSLAGEL--YSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEV  272 (287)
T ss_pred             HHHHhcCCccccceEeeCCCccchhhhH--hHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCcee
Confidence            777653    455555443322111000  1222334677889999998766          446666677788878755


Q ss_pred             eEEEe
Q psy7829         497 IDLIA  501 (511)
Q Consensus       497 i~~i~  501 (511)
                      +..++
T Consensus       273 v~~~~  277 (287)
T COG2521         273 VKKVR  277 (287)
T ss_pred             eeeeh
Confidence            55543

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=98.05  E-value=6.7e-05  Score=70.24  Aligned_cols=92  Identities=20%  Similarity=0.224  Sum_probs=74.8

Q ss_pred             hHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829         117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA  196 (511)
Q Consensus       117 p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  196 (511)
                      |.+...+++.|.  ++++...+|.--|.|+.+..+.+.+++.++++++|.++.+++.|++.+...      .+++.+++.
T Consensus         9 pVLl~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~------~~r~~~v~~   80 (314)
T COG0275           9 PVLLNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF------DGRVTLVHG   80 (314)
T ss_pred             chHHHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc------CCcEEEEeC
Confidence            447777888887  788899999999999999999999977888999999999999999998873      458999998


Q ss_pred             cCCCCC-----CCCCCccEEEecCC
Q psy7829         197 DAREGY-----LPEAPYDVIYYGGC  216 (511)
Q Consensus       197 d~~~~~-----~~~~~fD~I~~~~~  216 (511)
                      ++.+..     ...+.+|-|+.+..
T Consensus        81 ~F~~l~~~l~~~~i~~vDGiL~DLG  105 (314)
T COG0275          81 NFANLAEALKELGIGKVDGILLDLG  105 (314)
T ss_pred             cHHHHHHHHHhcCCCceeEEEEecc
Confidence            865321     11357888876633

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.05  E-value=7.6e-06  Score=79.41  Aligned_cols=60  Identities=18%  Similarity=0.188  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHhhcC-CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc
Q psy7829         357 ERSIAHILDLCYLN-LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS  419 (511)
Q Consensus       357 ~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~  419 (511)
                      ...+..++...... ..++.+|||+|||+|.+++.+++..   .+|+++|+++++++.++++..
T Consensus       127 ~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~  187 (315)
T PLN02585        127 AQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAK  187 (315)
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHH
Confidence            34455555552211 2357899999999999999999753   799999999999988877654

>KOG1596|consensus

Probab=98.04  E-value=2e-05  Score=70.53  Aligned_cols=115  Identities=25%  Similarity=0.272  Sum_probs=84.7

Q ss_pred             HHHHHHHHHhh-cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc
Q psy7829         119 QIADAAENLKL-HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD  197 (511)
Q Consensus       119 ~~~~~~~~l~~-~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  197 (511)
                      +.+-++--+.+ +++||.+||=+|+++|....+++..++|.+-||++|.|+..=...-..+++       -+||-.+.-|
T Consensus       141 LAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-------RtNiiPIiED  213 (317)
T KOG1596|consen  141 LAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-------RTNIIPIIED  213 (317)
T ss_pred             HHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-------cCCceeeecc
Confidence            44444443433 678999999999999999999999999999999999987554333332222       4578888889


Q ss_pred             CCCCCC---CCCCccEEEecCCCCch----HHHHHhhcccCcEEEEEEcc
Q psy7829         198 AREGYL---PEAPYDVIYYGGCVSEV----PSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       198 ~~~~~~---~~~~fD~I~~~~~~~~~----~~~~~~~LkpgG~l~~~~~~  240 (511)
                      +..+..   .-+..|+||++.+-+..    .-++...||+||.+++++-.
T Consensus       214 ArhP~KYRmlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisika  263 (317)
T KOG1596|consen  214 ARHPAKYRMLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVISIKA  263 (317)
T ss_pred             CCCchheeeeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEEEec
Confidence            875432   12568999998776543    35778899999999998753

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.04  E-value=7.4e-05  Score=72.41  Aligned_cols=112  Identities=13%  Similarity=0.224  Sum_probs=78.6

Q ss_pred             HhhcCCCCCEEEEEcCCccHHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEE--EEccCCCC
Q psy7829         127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGP---TGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI--VEADAREG  201 (511)
Q Consensus       127 l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~--~~~d~~~~  201 (511)
                      +...+.++..++|+|||+|..+..|.+.+.+   ..+++++|+|.++++.+.+++...     ..+.+++  +++|..+.
T Consensus        70 Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~-----~~p~l~v~~l~gdy~~~  144 (319)
T TIGR03439        70 IAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG-----NFSHVRCAGLLGTYDDG  144 (319)
T ss_pred             HHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc-----cCCCeEEEEEEecHHHH
Confidence            3334667889999999999998888877632   357999999999999999998821     3455555  88887643


Q ss_pred             C---CC---CCCccEEEec-CCCCc--------hHHHHHh-hcccCcEEEEEEccCCC
Q psy7829         202 Y---LP---EAPYDVIYYG-GCVSE--------VPSRVLN-QLKKGGRILAPIGPMDD  243 (511)
Q Consensus       202 ~---~~---~~~fD~I~~~-~~~~~--------~~~~~~~-~LkpgG~l~~~~~~~~~  243 (511)
                      .   +.   .....+++.- ..+.+        +++++.+ .|+|||.|++.++....
T Consensus       145 l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~  202 (319)
T TIGR03439       145 LAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKD  202 (319)
T ss_pred             HhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence            1   11   1335666543 33422        3477888 99999999997764443

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK03612 spermidine synthase; Provisional

Probab=98.02  E-value=4.3e-05  Score=80.01  Aligned_cols=123  Identities=12%  Similarity=0.142  Sum_probs=81.1

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc----------ccccccccccccccccc---c
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI----------STNHIDLIANETIEIIP---H  436 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~----------~~~~v~~i~~d~~~~l~---~  436 (511)
                      ..+++++|||||||+|..+..+++. ++..+|+++|+|+++++.++++.          ..++++++.+|+.+.+.   .
T Consensus       294 ~~~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~  372 (521)
T PRK03612        294 ASARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAE  372 (521)
T ss_pred             hCCCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCC
Confidence            3456789999999999999998864 23379999999999999988842          23568888888766543   4


Q ss_pred             cchhhhhcccCCcEEEEEc-CCccHHHHHHHHHhCCCcEEEEh-------HHHHHHHHHHHHhcCC
Q psy7829         437 ILDLCYLNLHRGAKVLEIG-SGSGYLATLMAHLVGPTGHVTGL-------EHMMDIAIESIANIST  494 (511)
Q Consensus       437 ~~d~i~~~l~~~~~vLD~~-~g~g~~~~~l~~~l~~~g~v~~~-------~~ml~~a~~~~~~~~~  494 (511)
                      .+|.+..+...... -+.. --+-.+...+.+.|+|+|.++..       ...+....+.+++.|+
T Consensus       373 ~fDvIi~D~~~~~~-~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf  437 (521)
T PRK03612        373 KFDVIIVDLPDPSN-PALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL  437 (521)
T ss_pred             CCCEEEEeCCCCCC-cchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence            56666665432210 0000 00112345667889999998763       4444556666666554

>KOG2904|consensus

Probab=98.02  E-value=2.1e-05  Score=72.02  Aligned_cols=65  Identities=20%  Similarity=0.336  Sum_probs=50.4

Q ss_pred             CCCHHHHHHHHHHhh-cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc
Q psy7829         354 PSSERSIAHILDLCY-LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS  419 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~-~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~  419 (511)
                      |.|.+-+..++.... .....+..+||+|||||.+++.+++.. |++.|+|||.+...++.+.+|..
T Consensus       128 pETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L-~~~~v~AiD~S~~Ai~La~eN~q  193 (328)
T KOG2904|consen  128 PETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL-PQCTVTAIDVSKAAIKLAKENAQ  193 (328)
T ss_pred             ccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcC-CCceEEEEeccHHHHHHHHHHHH
Confidence            678888877776511 122356789999999999999999998 57999999999877776666544

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.01  E-value=1e-05  Score=75.76  Aligned_cols=56  Identities=18%  Similarity=0.246  Sum_probs=45.4

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----ccccccccc
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANE  429 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d  429 (511)
                      ..++.+|||+|||+|.++..+++..   .+|+++|+++++++.++++...    .++.+..+|
T Consensus        61 ~~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d  120 (230)
T PRK07580         61 DLTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGLAGNITFEVGD  120 (230)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC
Confidence            4678899999999999999998764   6799999999999888776543    356666665

>KOG1663|consensus

Probab=98.00  E-value=1.4e-05  Score=71.58  Aligned_cols=106  Identities=18%  Similarity=0.315  Sum_probs=72.8

Q ss_pred             HHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----cccccccccccccccccc
Q psy7829         362 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETIEIIPHI  437 (511)
Q Consensus       362 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~~~l~~~  437 (511)
                      .++.. .+.+-.++++||||+=|||.++.+|..+.++|+|+++|++.+.++...+-..    ...|+++++.+.+.++.+
T Consensus        63 ~fl~~-li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l  141 (237)
T KOG1663|consen   63 QFLQM-LIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDEL  141 (237)
T ss_pred             HHHHH-HHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHH
Confidence            44443 3566789999999999999999999999889999999999887776654433    344788998887776543


Q ss_pred             --------chhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEE
Q psy7829         438 --------LDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVT  476 (511)
Q Consensus       438 --------~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~  476 (511)
                              ||.+|.+-.+..++        +.-..+.+.+++||-++
T Consensus       142 ~~~~~~~tfDfaFvDadK~nY~--------~y~e~~l~Llr~GGvi~  180 (237)
T KOG1663|consen  142 LADGESGTFDFAFVDADKDNYS--------NYYERLLRLLRVGGVIV  180 (237)
T ss_pred             HhcCCCCceeEEEEccchHHHH--------HHHHHHHhhcccccEEE
Confidence                    34333332222211        23355567777755443

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.00  E-value=1.3e-05  Score=76.21  Aligned_cols=48  Identities=21%  Similarity=0.283  Sum_probs=37.7

Q ss_pred             CCCCCEEEEEeccccH----HHHHHHHHhC----CCcEEEEEcCCHHHHHHHHhhc
Q psy7829         371 LHRGAKVLEIGSGSGY----LATLMAHLVG----PTGHVTGLEHMMDIAIESIANI  418 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~----~~~~la~~~~----~~~~v~~id~~~~~~~~~~~~~  418 (511)
                      ..++.+|||+|||||.    +++.+++..+    ++.+|+|+|+++++++.|+++.
T Consensus        97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~  152 (264)
T smart00138       97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI  152 (264)
T ss_pred             CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence            3456799999999996    5566666543    2478999999999999988764

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.99  E-value=1.6e-05  Score=76.35  Aligned_cols=95  Identities=16%  Similarity=0.228  Sum_probs=68.1

Q ss_pred             HHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHH---HHhhccccccccccccccccccccc
Q psy7829         362 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE---SIANISTNHIDLIANETIEIIPHIL  438 (511)
Q Consensus       362 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~---~~~~~~~~~v~~i~~d~~~~l~~~~  438 (511)
                      .++....+...++++|||+++|+|.-|..+|..++..+.|++.|++...+..   +.++++..++.++..|.....+...
T Consensus        74 S~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~  153 (283)
T PF01189_consen   74 SQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKP  153 (283)
T ss_dssp             HHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHH
T ss_pred             cccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccc
Confidence            3333334678899999999999999999999999778999999999766654   5667778888777666544322211


Q ss_pred             hhhhhcccCCcEEEEEcC-CccHH
Q psy7829         439 DLCYLNLHRGAKVLEIGS-GSGYL  461 (511)
Q Consensus       439 d~i~~~l~~~~~vLD~~~-g~g~~  461 (511)
                      ..     ..+..++|..| |+|.+
T Consensus       154 ~~-----~fd~VlvDaPCSg~G~i  172 (283)
T PF01189_consen  154 ES-----KFDRVLVDAPCSGLGTI  172 (283)
T ss_dssp             TT-----TEEEEEEECSCCCGGGT
T ss_pred             cc-----ccchhhcCCCccchhhh
Confidence            10     23456788888 78877

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>TIGR00417 speE spermidine synthase

Probab=97.99  E-value=4.5e-05  Score=73.05  Aligned_cols=106  Identities=12%  Similarity=0.095  Sum_probs=69.3

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-------ccccccccccccccc---cccchh
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-------TNHIDLIANETIEII---PHILDL  440 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-------~~~v~~i~~d~~~~l---~~~~d~  440 (511)
                      .+.+.+||+||||+|.++..+++.. +..+++++|+++++++.+++.+.       .++++++.+|+.+.+   +..+|.
T Consensus        70 ~~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv  148 (270)
T TIGR00417        70 HPNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV  148 (270)
T ss_pred             CCCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence            3456699999999999998887654 34789999999999888877653       245667777765544   234565


Q ss_pred             hhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         441 CYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       441 i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ++.+....... ....-+-.+...+.+.|+|+|.++..
T Consensus       149 Ii~D~~~~~~~-~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       149 IIVDSTDPVGP-AETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             EEEeCCCCCCc-ccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            55443211100 00000223445677889999998865

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.99  E-value=4.5e-05  Score=72.70  Aligned_cols=94  Identities=21%  Similarity=0.247  Sum_probs=75.3

Q ss_pred             ccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeE
Q psy7829         113 VMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVR  192 (511)
Q Consensus       113 ~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~  192 (511)
                      .+..+.+...+++.+.  +.++..|||+|+|+|.+|..+++..   .+++++|+++.+++..++++..       .++++
T Consensus        12 FL~~~~~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~-------~~~~~   79 (262)
T PF00398_consen   12 FLVDPNIADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFAS-------NPNVE   79 (262)
T ss_dssp             EEEHHHHHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTT-------CSSEE
T ss_pred             eeCCHHHHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhh-------cccce
Confidence            3457788889999887  6789999999999999999999986   4799999999999999987653       45899


Q ss_pred             EEEccCCCCCCCC---CCccEEEecCCCC
Q psy7829         193 IVEADAREGYLPE---APYDVIYYGGCVS  218 (511)
Q Consensus       193 ~~~~d~~~~~~~~---~~fD~I~~~~~~~  218 (511)
                      ++.+|+.......   .....|+++.++.
T Consensus        80 vi~~D~l~~~~~~~~~~~~~~vv~NlPy~  108 (262)
T PF00398_consen   80 VINGDFLKWDLYDLLKNQPLLVVGNLPYN  108 (262)
T ss_dssp             EEES-TTTSCGGGHCSSSEEEEEEEETGT
T ss_pred             eeecchhccccHHhhcCCceEEEEEeccc
Confidence            9999997633221   3456888887773

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=97.98  E-value=2.1e-05  Score=73.68  Aligned_cols=113  Identities=24%  Similarity=0.242  Sum_probs=67.8

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc--cccccccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN--HIDLIANETIEI  433 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~--~v~~i~~d~~~~  433 (511)
                      ++..+..+...  ....++.+|||||||+|.++..+++..   .+++++|+++++++.+.+++...  +++++..+..+.
T Consensus        33 ~~~~~~~l~~~--~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~  107 (233)
T PRK05134         33 NPLRLNYIREH--AGGLFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEEL  107 (233)
T ss_pred             hHHHHHHHHHh--ccCCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHh
Confidence            33444444443  345578899999999999999888753   68999999999988877665422  344444433222


Q ss_pred             c---cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         434 I---PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       434 l---~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .   ...+|.++...     ++..-.....+...+.+.++|+|.++..
T Consensus       108 ~~~~~~~fD~Ii~~~-----~l~~~~~~~~~l~~~~~~L~~gG~l~v~  150 (233)
T PRK05134        108 AAEHPGQFDVVTCME-----MLEHVPDPASFVRACAKLVKPGGLVFFS  150 (233)
T ss_pred             hhhcCCCccEEEEhh-----HhhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence            1   12333332210     0111113334456667778888887654

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=97.95  E-value=1.4e-05  Score=70.26  Aligned_cols=59  Identities=22%  Similarity=0.298  Sum_probs=47.6

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccc
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEII  434 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l  434 (511)
                      -+++|.+|||+|||.|.+...|.+.-  +..++|+|++++.+.++.++    .+.++++|.-+.+
T Consensus        10 ~I~pgsrVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~r----Gv~Viq~Dld~gL   68 (193)
T PF07021_consen   10 WIEPGSRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVAR----GVSVIQGDLDEGL   68 (193)
T ss_pred             HcCCCCEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHHc----CCCEEECCHHHhH
Confidence            46789999999999999999887754  48999999999988877665    3677777754443

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PLN02672 methionine S-methyltransferase

Probab=97.95  E-value=8.9e-06  Score=90.07  Aligned_cols=72  Identities=17%  Similarity=0.227  Sum_probs=57.4

Q ss_pred             CCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc-------------------cccccccccccccc
Q psy7829         374 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST-------------------NHIDLIANETIEII  434 (511)
Q Consensus       374 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~-------------------~~v~~i~~d~~~~l  434 (511)
                      +.+|||+|||+|.+++.+++.. +..+|+++|+++++++.+.+|...                   .+++++++|..+.+
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~  197 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC  197 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence            5689999999999999999887 568999999999888887777653                   35788888876655


Q ss_pred             cc---cchhhhhccc
Q psy7829         435 PH---ILDLCYLNLH  446 (511)
Q Consensus       435 ~~---~~d~i~~~l~  446 (511)
                      ..   .+|.++.|.+
T Consensus       198 ~~~~~~fDlIVSNPP  212 (1082)
T PLN02672        198 RDNNIELDRIVGCIP  212 (1082)
T ss_pred             cccCCceEEEEECCC
Confidence            32   4777777654

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.94  E-value=5.5e-05  Score=71.25  Aligned_cols=48  Identities=25%  Similarity=0.358  Sum_probs=36.6

Q ss_pred             HHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHH
Q psy7829         362 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE  413 (511)
Q Consensus       362 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~  413 (511)
                      ++...  +.--.|.+|||||||.||.+..++... + ..|+|||.+.-...+
T Consensus       106 rl~p~--l~~L~gk~VLDIGC~nGY~~frM~~~G-A-~~ViGiDP~~lf~~Q  153 (315)
T PF08003_consen  106 RLLPH--LPDLKGKRVLDIGCNNGYYSFRMLGRG-A-KSVIGIDPSPLFYLQ  153 (315)
T ss_pred             HHHhh--hCCcCCCEEEEecCCCcHHHHHHhhcC-C-CEEEEECCChHHHHH
Confidence            44443  433479999999999999999998775 3 789999998544443

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=97.93  E-value=8.4e-06  Score=71.48  Aligned_cols=40  Identities=30%  Similarity=0.444  Sum_probs=35.5

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHH
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE  413 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~  413 (511)
                      ..++.+|||+|||+|.++..+++..   .+++++|+++.++..
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~~~g~D~~~~~~~~   59 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRG---FEVTGVDISPQMIEK   59 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTT---SEEEEEESSHHHHHH
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHhh
Confidence            6789999999999999999996653   599999999998877

...

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.92  E-value=1.7e-05  Score=71.15  Aligned_cols=92  Identities=25%  Similarity=0.364  Sum_probs=61.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC--------CC-
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG--------YL-  203 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--------~~-  203 (511)
                      .+.+|||+||++|+++..+.++.++.++|+|+|+.+.         .       ...++.++++|..+.        .. 
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~-------~~~~~~~i~~d~~~~~~~~~i~~~~~   86 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------D-------PLQNVSFIQGDITNPENIKDIRKLLP   86 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------G-------S-TTEEBTTGGGEEEEHSHHGGGSHG
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------c-------cccceeeeecccchhhHHHhhhhhcc
Confidence            3489999999999999999998766789999999876         1       123566666665421        11 


Q ss_pred             -CCCCccEEEecCCCCc--------h---------HHHHHhhcccCcEEEEEEcc
Q psy7829         204 -PEAPYDVIYYGGCVSE--------V---------PSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       204 -~~~~fD~I~~~~~~~~--------~---------~~~~~~~LkpgG~l~~~~~~  240 (511)
                       ....+|+|+++.....        .         +.-+.+.|+|||.+++-+..
T Consensus        87 ~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~  141 (181)
T PF01728_consen   87 ESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK  141 (181)
T ss_dssp             TTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred             ccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence             1268999999984311        0         13445789999999987654

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.92  E-value=3.2e-05  Score=73.89  Aligned_cols=92  Identities=20%  Similarity=0.252  Sum_probs=65.6

Q ss_pred             hHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829         117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA  196 (511)
Q Consensus       117 p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  196 (511)
                      |-+...+++.|.  ..++..++|.--|.|+.+..+.+.++ .++++|+|.++.+++.|++++..      ..+++.++++
T Consensus         6 PVll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~-~~~li~~DrD~~a~~~a~~~l~~------~~~r~~~~~~   76 (310)
T PF01795_consen    6 PVLLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLP-NGRLIGIDRDPEALERAKERLKK------FDDRFIFIHG   76 (310)
T ss_dssp             -TTHHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-T-T-EEEEEES-HHHHHHHHCCTCC------CCTTEEEEES
T ss_pred             cccHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCC-CCeEEEecCCHHHHHHHHHHHhh------ccceEEEEec
Confidence            457778888887  78889999999999999999999984 59999999999999999988775      2568999999


Q ss_pred             cCCCC------CCCCCCccEEEecCCC
Q psy7829         197 DAREG------YLPEAPYDVIYYGGCV  217 (511)
Q Consensus       197 d~~~~------~~~~~~fD~I~~~~~~  217 (511)
                      ++.+.      ......+|.|+.+..+
T Consensus        77 ~F~~l~~~l~~~~~~~~~dgiL~DLGv  103 (310)
T PF01795_consen   77 NFSNLDEYLKELNGINKVDGILFDLGV  103 (310)
T ss_dssp             -GGGHHHHHHHTTTTS-EEEEEEE-S-
T ss_pred             cHHHHHHHHHHccCCCccCEEEEcccc
Confidence            87631      1123579999887554

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>KOG3010|consensus

Probab=97.90  E-value=3.7e-05  Score=69.30  Aligned_cols=100  Identities=12%  Similarity=0.116  Sum_probs=60.8

Q ss_pred             CCCCCC-EEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc--cc--cccccccccccc--cccchhhh
Q psy7829         370 NLHRGA-KVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST--NH--IDLIANETIEII--PHILDLCY  442 (511)
Q Consensus       370 ~~~~~~-~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~--~~--v~~i~~d~~~~l--~~~~d~i~  442 (511)
                      ...++. .++|+|||+|..++.+|..+   .+|+|+|++++|++.+.+....  .+  ..+...+..+++  +...|++.
T Consensus        29 ~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~  105 (261)
T KOG3010|consen   29 SRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLIT  105 (261)
T ss_pred             hhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeeh
Confidence            345555 89999999998899999987   7999999999999987765442  11  222333333333  33333332


Q ss_pred             hcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       443 ~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ....-++      |..-.+-..+.+.|++.|.++++
T Consensus       106 ~Aqa~HW------Fdle~fy~~~~rvLRk~Gg~iav  135 (261)
T KOG3010|consen  106 AAQAVHW------FDLERFYKEAYRVLRKDGGLIAV  135 (261)
T ss_pred             hhhhHHh------hchHHHHHHHHHHcCCCCCEEEE
Confidence            2211111      11223344556777777866665

>TIGR00095 RNA methyltransferase, RsmD family

Probab=97.90  E-value=3e-05  Score=69.78  Aligned_cols=61  Identities=16%  Similarity=0.183  Sum_probs=48.1

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cc-ccccccccccccc
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TN-HIDLIANETIEII  434 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~-~v~~i~~d~~~~l  434 (511)
                      -++.+|||++||+|.+++.++.+..  .+|+++|.+...++.+++|+.   .. +++++++|..+.+
T Consensus        48 ~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l  112 (189)
T TIGR00095        48 IQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRAL  112 (189)
T ss_pred             cCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHH
Confidence            4689999999999999999998763  589999999877776666654   32 5678888875543

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=97.86  E-value=5.5e-05  Score=69.43  Aligned_cols=113  Identities=14%  Similarity=0.110  Sum_probs=72.3

Q ss_pred             CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---------------
Q psy7829         355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---------------  419 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---------------  419 (511)
                      .++..+.....   +...++.+||+.|||.|..+.+||...   -+|+|+|+++..++++.+..+               
T Consensus        28 pnp~L~~~~~~---l~~~~~~rvLvPgCGkg~D~~~LA~~G---~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~  101 (226)
T PRK13256         28 PNEFLVKHFSK---LNINDSSVCLIPMCGCSIDMLFFLSKG---VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK  101 (226)
T ss_pred             CCHHHHHHHHh---cCCCCCCeEEEeCCCChHHHHHHHhCC---CcEEEEecCHHHHHHHHHHcCCCcceecccccceec
Confidence            35555555433   455578899999999999999999765   789999999988888655321               


Q ss_pred             ccccccccccccccccccchhhhhcccCCcEEEEEcCC-------ccHHHHHHHHHhCCCcEEEEh
Q psy7829         420 TNHIDLIANETIEIIPHILDLCYLNLHRGAKVLEIGSG-------SGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       420 ~~~v~~i~~d~~~~l~~~~d~i~~~l~~~~~vLD~~~g-------~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..+++++++|..+.-+..     ....+-+.|.|-+|=       -...+..+.+.++|+|+++++
T Consensus       102 ~~~i~~~~gD~f~l~~~~-----~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll  162 (226)
T PRK13256        102 GDDIEIYVADIFNLPKIA-----NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLL  162 (226)
T ss_pred             cCceEEEEccCcCCCccc-----cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            234566666655432100     001112335555431       112355677788999998887

>TIGR00478 tly hemolysin TlyA family protein

Probab=97.86  E-value=0.00014  Score=67.11  Aligned_cols=49  Identities=20%  Similarity=0.275  Sum_probs=38.0

Q ss_pred             HHHHHHhhcCC-CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHH
Q psy7829         361 AHILDLCYLNL-HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE  413 (511)
Q Consensus       361 ~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~  413 (511)
                      ..++..  +.+ .++.+|||+|||||+++..+++.. . .+|+|+|++.++...
T Consensus        64 ~~~l~~--~~~~~~~~~vlDiG~gtG~~t~~l~~~g-a-~~v~avD~~~~~l~~  113 (228)
T TIGR00478        64 KEALEE--FNIDVKNKIVLDVGSSTGGFTDCALQKG-A-KEVYGVDVGYNQLAE  113 (228)
T ss_pred             HHHHHh--cCCCCCCCEEEEcccCCCHHHHHHHHcC-C-CEEEEEeCCHHHHHH
Confidence            344444  444 368899999999999999999873 2 789999999866654

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.85  E-value=5.2e-05  Score=68.76  Aligned_cols=76  Identities=26%  Similarity=0.305  Sum_probs=58.1

Q ss_pred             EEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCC
Q psy7829         137 VLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGC  216 (511)
Q Consensus       137 vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~  216 (511)
                      |.||||-.|++.+.|.+.. ...+++++|+++.-++.|+++++..+    ..++++++.+|..+...+....|.|++.++
T Consensus         1 vaDIGtDHgyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~~~----l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM   75 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAKYG----LEDRIEVRLGDGLEVLKPGEDVDTIVIAGM   75 (205)
T ss_dssp             EEEET-STTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTT-----TTTEEEEE-SGGGG--GGG---EEEEEEE
T ss_pred             CceeccchhHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcC----CcccEEEEECCcccccCCCCCCCEEEEecC
Confidence            6899999999999999985 66789999999999999999999986    467899999998876655344788877655


Q ss_pred             C
Q psy7829         217 V  217 (511)
Q Consensus       217 ~  217 (511)
                      -
T Consensus        76 G   76 (205)
T PF04816_consen   76 G   76 (205)
T ss_dssp             -
T ss_pred             C
Confidence            4

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG3045|consensus

Probab=97.84  E-value=7.4e-05  Score=67.84  Aligned_cols=91  Identities=18%  Similarity=0.231  Sum_probs=67.1

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCC
Q psy7829         120 IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAR  199 (511)
Q Consensus       120 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  199 (511)
                      +..+++.+.. ......|-|+|||-+.++.   .   ..-+|+.+|+.+                    .|-+++.+|+.
T Consensus       168 ld~ii~~ik~-r~~~~vIaD~GCGEakiA~---~---~~~kV~SfDL~a--------------------~~~~V~~cDm~  220 (325)
T KOG3045|consen  168 LDVIIRKIKR-RPKNIVIADFGCGEAKIAS---S---ERHKVHSFDLVA--------------------VNERVIACDMR  220 (325)
T ss_pred             HHHHHHHHHh-CcCceEEEecccchhhhhh---c---cccceeeeeeec--------------------CCCceeecccc
Confidence            3456666652 2345689999999998775   1   233599999842                    14567889998


Q ss_pred             CCCCCCCCccEEEecCCC-----CchHHHHHhhcccCcEEEEE
Q psy7829         200 EGYLPEAPYDVIYYGGCV-----SEVPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       200 ~~~~~~~~fD~I~~~~~~-----~~~~~~~~~~LkpgG~l~~~  237 (511)
                      ..+.++++.|++++..++     ..+..++.+.|+|||.+++.
T Consensus       221 ~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IA  263 (325)
T KOG3045|consen  221 NVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIA  263 (325)
T ss_pred             CCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEE
Confidence            877778999998876554     34568999999999999985

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.82  E-value=2.6e-06  Score=69.14  Aligned_cols=94  Identities=30%  Similarity=0.452  Sum_probs=38.4

Q ss_pred             EEEcCCccHHHHHHHHHhCCCc--eEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC--CCCCccEEEe
Q psy7829         138 LDLGSGSGYQTCVFAHMVGPTG--KVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL--PEAPYDVIYY  213 (511)
Q Consensus       138 LDiG~G~G~~~~~la~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD~I~~  213 (511)
                      ||+|+..|..+..+++.+.+..  +++++|..+. .+.+++.+++.+    ...+++++.+|..+...  ..++||+|++
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~----~~~~~~~~~g~s~~~l~~~~~~~~dli~i   75 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG----LSDRVEFIQGDSPDFLPSLPDGPIDLIFI   75 (106)
T ss_dssp             --------------------------EEEESS-------------GG----G-BTEEEEES-THHHHHHHHH--EEEEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcC----CCCeEEEEEcCcHHHHHHcCCCCEEEEEE
Confidence            6999999999999998875544  7999999985 333344443322    34579999999864221  1368999999


Q ss_pred             cCCC--Cc---hHHHHHhhcccCcEEEE
Q psy7829         214 GGCV--SE---VPSRVLNQLKKGGRILA  236 (511)
Q Consensus       214 ~~~~--~~---~~~~~~~~LkpgG~l~~  236 (511)
                      +..=  +.   -...+.+.|+|||.+++
T Consensus        76 Dg~H~~~~~~~dl~~~~~~l~~ggviv~  103 (106)
T PF13578_consen   76 DGDHSYEAVLRDLENALPRLAPGGVIVF  103 (106)
T ss_dssp             ES---HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence            9752  22   23678889999999886

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.81  E-value=0.00026  Score=60.57  Aligned_cols=102  Identities=24%  Similarity=0.407  Sum_probs=69.0

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCc
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMV---GPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPY  208 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  208 (511)
                      .+...|+|+|||.|+++..++..+   .+..+|+++|.++..++.++++.+..+..  ...++++..++...... ....
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~  100 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSD--LEKRLSFIQGDIADESS-SDPP  100 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcch--hhccchhhccchhhhcc-cCCC
Confidence            567899999999999999999933   35679999999999999999988775310  12456677666543221 3556


Q ss_pred             cEEEecCCCCchHHH-HHhhcccCcEEEE
Q psy7829         209 DVIYYGGCVSEVPSR-VLNQLKKGGRILA  236 (511)
Q Consensus       209 D~I~~~~~~~~~~~~-~~~~LkpgG~l~~  236 (511)
                      ++++.-..+-.+... +...++|+-..++
T Consensus       101 ~~~vgLHaCG~Ls~~~l~~~~~~~~~~l~  129 (141)
T PF13679_consen  101 DILVGLHACGDLSDRALRLFIRPNARFLV  129 (141)
T ss_pred             eEEEEeecccchHHHHHHHHHHcCCCEEE
Confidence            777766555544432 2333346555544

>KOG2198|consensus

Probab=97.80  E-value=0.00014  Score=69.92  Aligned_cols=104  Identities=21%  Similarity=0.251  Sum_probs=77.4

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC----
Q psy7829         130 HLVDGAKVLDLGSGSGYQTCVFAHMVGP---TGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY----  202 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----  202 (511)
                      .++|+.+|||+|+.+|.-++.+.+...+   .+.|++-|.++..+..........     ..+++.+...|+...+    
T Consensus       152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l-----~~~~~~v~~~~~~~~p~~~~  226 (375)
T KOG2198|consen  152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL-----PSPNLLVTNHDASLFPNIYL  226 (375)
T ss_pred             ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc-----CCcceeeecccceecccccc
Confidence            4789999999999999999999887743   347999999999888888777553     3445555555554211    


Q ss_pred             ---C--CCCCccEEEecCCCC-----------------------------chHHHHHhhcccCcEEEEEE
Q psy7829         203 ---L--PEAPYDVIYYGGCVS-----------------------------EVPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       203 ---~--~~~~fD~I~~~~~~~-----------------------------~~~~~~~~~LkpgG~l~~~~  238 (511)
                         .  ....||.|+++.+|.                             .++.+..++||+||++|.++
T Consensus       227 ~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST  296 (375)
T KOG2198|consen  227 KDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST  296 (375)
T ss_pred             ccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence               1  224699999998871                             12356789999999999874

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.80  E-value=3.5e-05  Score=77.04  Aligned_cols=106  Identities=18%  Similarity=0.188  Sum_probs=64.3

Q ss_pred             HHHHHHHHHhhcCCCC--CEEEEEcCCccHHHHHHHHHhCCCceEEEE-----eCCHHHHHHHHHHHhccCCCcCCCCCe
Q psy7829         119 QIADAAENLKLHLVDG--AKVLDLGSGSGYQTCVFAHMVGPTGKVIGV-----EHIPELIEASLRNISKGNKDLLDSGRV  191 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~--~~vLDiG~G~G~~~~~la~~~~~~~~v~~i-----D~~~~~~~~a~~~~~~~~~~~~~~~~v  191 (511)
                      ....+.+.+......+  ..+||+|||+|.++..|..+.     |+.+     |..+..++.|-++         +.+-+
T Consensus       101 Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~-----V~t~s~a~~d~~~~qvqfaleR---------Gvpa~  166 (506)
T PF03141_consen  101 YIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERN-----VTTMSFAPNDEHEAQVQFALER---------GVPAM  166 (506)
T ss_pred             HHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCC-----ceEEEcccccCCchhhhhhhhc---------Ccchh
Confidence            4444555554211223  258999999999999998863     4444     4445556665544         12111


Q ss_pred             EEEEccCCCCCCCCCCccEEEecCCCC-c------hHHHHHhhcccCcEEEEEEc
Q psy7829         192 RIVEADAREGYLPEAPYDVIYYGGCVS-E------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       192 ~~~~~d~~~~~~~~~~fD~I~~~~~~~-~------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      --+.+.- ..+.+.+.||+|+|....- +      ++-++-++|+|||+++.+-.
T Consensus       167 ~~~~~s~-rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~p  220 (506)
T PF03141_consen  167 IGVLGSQ-RLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGP  220 (506)
T ss_pred             hhhhccc-cccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCC
Confidence            1111221 2344568999999986652 1      23578999999999998643

; GO: 0008168 methyltransferase activity

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.80  E-value=0.00023  Score=67.10  Aligned_cols=100  Identities=24%  Similarity=0.356  Sum_probs=63.9

Q ss_pred             CCEEEEEcCCcc-HHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHh-ccCCCcCCCCCeEEEEccCCCCCCCCCCccEE
Q psy7829         134 GAKVLDLGSGSG-YQTCVFAHMVGPTGKVIGVEHIPELIEASLRNIS-KGNKDLLDSGRVRIVEADAREGYLPEAPYDVI  211 (511)
Q Consensus       134 ~~~vLDiG~G~G-~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I  211 (511)
                      ..+|+=||||+= ..++.+++..++...|+++|+++++++.+++-.. ..+    ...++.|+.+|.......-..||+|
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~----L~~~m~f~~~d~~~~~~dl~~~DvV  196 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG----LSKRMSFITADVLDVTYDLKEYDVV  196 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H----H-SSEEEEES-GGGG-GG----SEE
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc----ccCCeEEEecchhccccccccCCEE
Confidence            359999999974 5566777766677889999999999999998877 322    3567999999987543333679999


Q ss_pred             EecCCCC-------chHHHHHhhcccCcEEEEE
Q psy7829         212 YYGGCVS-------EVPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       212 ~~~~~~~-------~~~~~~~~~LkpgG~l~~~  237 (511)
                      +...-..       .+...+.+.++||..+++-
T Consensus       197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R  229 (276)
T PF03059_consen  197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVVR  229 (276)
T ss_dssp             EE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred             EEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence            9876553       4678999999999999873

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=97.79  E-value=4.9e-05  Score=67.75  Aligned_cols=46  Identities=22%  Similarity=0.147  Sum_probs=35.4

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIAN  417 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~  417 (511)
                      ...-++.++||+|||.|..++.||+..   -.|+++|+++..+++..+.
T Consensus        26 ~~~~~~g~~LDlgcG~GRNalyLA~~G---~~VtAvD~s~~al~~l~~~   71 (192)
T PF03848_consen   26 VPLLKPGKALDLGCGEGRNALYLASQG---FDVTAVDISPVALEKLQRL   71 (192)
T ss_dssp             CTTS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHH
T ss_pred             HhhcCCCcEEEcCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHH
Confidence            445567899999999999999999875   7999999998777654443

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=97.79  E-value=3.7e-05  Score=71.60  Aligned_cols=98  Identities=21%  Similarity=0.268  Sum_probs=59.7

Q ss_pred             CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc---cccccccccccccc---ccchhhhhccc
Q psy7829         373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN---HIDLIANETIEIIP---HILDLCYLNLH  446 (511)
Q Consensus       373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~---~v~~i~~d~~~~l~---~~~d~i~~~l~  446 (511)
                      .+.+|||+|||+|.++..+++..   .+++++|+++.++..+.+++...   ++.+...+..+...   ..+|.++... 
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~-  120 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCME-  120 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehh-
Confidence            47899999999999999888754   67999999999988877765432   35555554333221   2233322210 


Q ss_pred             CCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         447 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       447 ~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                          ++.....+-.+...+.+.++|+|.++..
T Consensus       121 ----~l~~~~~~~~~l~~~~~~L~~gG~l~i~  148 (224)
T TIGR01983       121 ----VLEHVPDPQAFIRACAQLLKPGGILFFS  148 (224)
T ss_pred             ----HHHhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence                0111122333445566667777776543

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=97.78  E-value=0.00012  Score=58.32  Aligned_cols=55  Identities=24%  Similarity=0.401  Sum_probs=40.6

Q ss_pred             EEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHh---hccccccccccccccc
Q psy7829         376 KVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA---NISTNHIDLIANETIE  432 (511)
Q Consensus       376 ~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~---~~~~~~v~~i~~d~~~  432 (511)
                      +|+|+|||+|..+..+++ . +..+++++|.+++....+.+   .....++.++..+..+
T Consensus         1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   58 (107)
T cd02440           1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEE   58 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhh
Confidence            489999999999999887 2 45899999999887776652   2234456666655443

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=97.76  E-value=0.0001  Score=70.86  Aligned_cols=121  Identities=16%  Similarity=0.194  Sum_probs=81.4

Q ss_pred             CCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccc---cccc-
Q psy7829         353 GPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHID---LIAN-  428 (511)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~---~i~~-  428 (511)
                      +...|+.+..+..+  ..+++|+.|||==||||.+.+.+....   .+++|.|++..|++.++.|++.-+++   +... 
T Consensus       179 ~s~~P~lAR~mVNL--a~v~~G~~vlDPFcGTGgiLiEagl~G---~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~  253 (347)
T COG1041         179 GSMDPRLARAMVNL--ARVKRGELVLDPFCGTGGILIEAGLMG---ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVL  253 (347)
T ss_pred             CCcCHHHHHHHHHH--hccccCCEeecCcCCccHHHHhhhhcC---ceEeecchHHHHHhhhhhhhhhhCcCceeEEEec
Confidence            45677888777777  788999999999999999999988554   89999999999999999998854432   3322 


Q ss_pred             ccccc-cc-ccchhhhhcccCCcEEEEEcCC----ccHHHHHHHHHhCCCcEEEEh
Q psy7829         429 ETIEI-IP-HILDLCYLNLHRGAKVLEIGSG----SGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       429 d~~~~-l~-~~~d~i~~~l~~~~~vLD~~~g----~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      |+... ++ ..+|.+..+.+-|...---+.+    .-.+...+.+.|+++|.++-.
T Consensus       254 Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~  309 (347)
T COG1041         254 DATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA  309 (347)
T ss_pred             ccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence            33221 22 2366666665544322101111    112244566778888877665

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.75  E-value=0.00018  Score=64.27  Aligned_cols=82  Identities=27%  Similarity=0.392  Sum_probs=71.1

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ++.+.++.||||-.+++.+.+.+.. +...+++.|+++..++.|.+++.+++    ..+++++.++|.......+..+|.
T Consensus        14 V~~~~~iaDIGsDHAYLp~~Lv~~~-~~~~~va~eV~~gpl~~a~~~v~~~~----l~~~i~vr~~dgl~~l~~~d~~d~   88 (226)
T COG2384          14 VKQGARIADIGSDHAYLPIYLVKNN-PASTAVAGEVVPGPLESAIRNVKKNN----LSERIDVRLGDGLAVLELEDEIDV   88 (226)
T ss_pred             HHcCCceeeccCchhHhHHHHHhcC-CcceEEEeecccCHHHHHHHHHHhcC----CcceEEEeccCCccccCccCCcCE
Confidence            4567779999999999999999985 78899999999999999999999987    677899999999776666568999


Q ss_pred             EEecCCC
Q psy7829         211 IYYGGCV  217 (511)
Q Consensus       211 I~~~~~~  217 (511)
                      |++.++-
T Consensus        89 ivIAGMG   95 (226)
T COG2384          89 IVIAGMG   95 (226)
T ss_pred             EEEeCCc
Confidence            9887654

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.74  E-value=7.5e-05  Score=65.10  Aligned_cols=93  Identities=23%  Similarity=0.284  Sum_probs=73.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY  212 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~  212 (511)
                      .|.+|||+|+|+|..++..++..  ...|++.|+.+.....++-|++.+|.      ++.+...|...   ....||+|+
T Consensus        79 rgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv------~i~~~~~d~~g---~~~~~Dl~L  147 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGV------SILFTHADLIG---SPPAFDLLL  147 (218)
T ss_pred             ccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccc------eeEEeeccccC---CCcceeEEE
Confidence            68999999999999999988875  45799999999999999999888753      68888888754   336799999


Q ss_pred             ecCCCCc-----hHHHHHhhcccCcEEEE
Q psy7829         213 YGGCVSE-----VPSRVLNQLKKGGRILA  236 (511)
Q Consensus       213 ~~~~~~~-----~~~~~~~~LkpgG~l~~  236 (511)
                      .+..+..     -+-.++..|+..|..++
T Consensus       148 agDlfy~~~~a~~l~~~~~~l~~~g~~vl  176 (218)
T COG3897         148 AGDLFYNHTEADRLIPWKDRLAEAGAAVL  176 (218)
T ss_pred             eeceecCchHHHHHHHHHHHHHhCCCEEE
Confidence            8776632     11237777888887777

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.74  E-value=6.9e-05  Score=71.40  Aligned_cols=74  Identities=24%  Similarity=0.336  Sum_probs=62.5

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-ccccccccccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNHIDLIANETIEII  434 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~~l  434 (511)
                      .+..+.+++..  +.+.+++.|||||+|+|.+|..+++..   .+|+++|++..+++.-.+.+. .++++++++|..++-
T Consensus        15 ~~~~~~~Iv~~--~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~   89 (262)
T PF00398_consen   15 DPNIADKIVDA--LDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWD   89 (262)
T ss_dssp             HHHHHHHHHHH--HTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSC
T ss_pred             CHHHHHHHHHh--cCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhcccceeeecchhccc
Confidence            35777788887  677799999999999999999999887   899999999999988877765 788999999977643

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=97.73  E-value=7.5e-05  Score=66.61  Aligned_cols=96  Identities=21%  Similarity=0.179  Sum_probs=63.0

Q ss_pred             CCCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcE---------EEEEcCCHHHHHHHHhhccccc
Q psy7829         352 NGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGH---------VTGLEHMMDIAIESIANISTNH  422 (511)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~---------v~~id~~~~~~~~~~~~~~~~~  422 (511)
                      .++..+..++.++.+  ...++++.|||--||+|.+.+..|... .+..         ++|+|++.++++.+++|+...+
T Consensus         9 ~a~L~~~lA~~ll~l--a~~~~~~~vlDP~CGsGtiliEaa~~~-~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag   85 (179)
T PF01170_consen    9 PAPLRPTLAAALLNL--AGWRPGDVVLDPFCGSGTILIEAALMG-ANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG   85 (179)
T ss_dssp             STSS-HHHHHHHHHH--TT--TTS-EEETT-TTSHHHHHHHHHH-TTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHH--hCCCCCCEEeecCCCCCHHHHHHHHHh-hCcccccccccccEEecCCCHHHHHHHHHHHHhcc
Confidence            346677777777777  778899999999999999999998876 3344         8999999999988888776333


Q ss_pred             ----cccccccccccc--cccchhhhhcccCCcE
Q psy7829         423 ----IDLIANETIEII--PHILDLCYLNLHRGAK  450 (511)
Q Consensus       423 ----v~~i~~d~~~~l--~~~~d~i~~~l~~~~~  450 (511)
                          +++.+.|..+..  +..++.+..|++-|.+
T Consensus        86 ~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r  119 (179)
T PF01170_consen   86 VEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRR  119 (179)
T ss_dssp             -CGGEEEEE--GGGGGGTTSBSCEEEEE--STTS
T ss_pred             cCCceEEEecchhhcccccCCCCEEEECcchhhh
Confidence                456666654433  2345666666555543

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.73  E-value=0.00022  Score=68.01  Aligned_cols=108  Identities=19%  Similarity=0.219  Sum_probs=81.6

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH--HhccCCCcCCCCCeEEEEccCCCCCC-CCCCc
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN--ISKGNKDLLDSGRVRIVEADAREGYL-PEAPY  208 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~--~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~f  208 (511)
                      +...+||-+|.|.|.....+.+. ....+++-+|++|.|++.++++  +...+.+.+..++++++..|+.+-.. ....|
T Consensus       288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f  366 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF  366 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence            44568999999999999998875 2367999999999999999944  33333333567899999999875322 23689


Q ss_pred             cEEEecCCCCch-----------HHHHHhhcccCcEEEEEEcc
Q psy7829         209 DVIYYGGCVSEV-----------PSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       209 D~I~~~~~~~~~-----------~~~~~~~LkpgG~l~~~~~~  240 (511)
                      |.|+.+.+-+.-           ...+.+.|+++|.+++--+.
T Consensus       367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags  409 (508)
T COG4262         367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS  409 (508)
T ss_pred             cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCC
Confidence            999998665332           25678899999999986543

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=97.72  E-value=2.9e-05  Score=67.16  Aligned_cols=68  Identities=19%  Similarity=0.285  Sum_probs=48.4

Q ss_pred             CEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----cccccccccccccccccc-----chhhhhcc
Q psy7829         375 AKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETIEIIPHI-----LDLCYLNL  445 (511)
Q Consensus       375 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~~~l~~~-----~d~i~~~l  445 (511)
                      ..|+|+.||.|..++.+|+.+   .+|++||+++..++.++.|..    ..+|+++++|..+.+...     +|.++...
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP   77 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP   77 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred             CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence            369999999999999999887   799999999877776666654    457999999977765432     46666544

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PRK04148 hypothetical protein; Provisional

Probab=97.71  E-value=0.00016  Score=60.26  Aligned_cols=56  Identities=13%  Similarity=0.160  Sum_probs=42.1

Q ss_pred             cCCCCCCEEEEEeccccH-HHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccccc
Q psy7829         369 LNLHRGAKVLEIGSGSGY-LATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETI  431 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~-~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~  431 (511)
                      +....+.+|||||||+|. .+..|++. |  ..|+++|++++.++.+.++.    ++++.+|..
T Consensus        12 ~~~~~~~kileIG~GfG~~vA~~L~~~-G--~~ViaIDi~~~aV~~a~~~~----~~~v~dDlf   68 (134)
T PRK04148         12 YEKGKNKKIVELGIGFYFKVAKKLKES-G--FDVIVIDINEKAVEKAKKLG----LNAFVDDLF   68 (134)
T ss_pred             cccccCCEEEEEEecCCHHHHHHHHHC-C--CEEEEEECCHHHHHHHHHhC----CeEEECcCC
Confidence            344467899999999997 88888754 3  79999999999888776653    455555543

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=97.71  E-value=0.00017  Score=71.60  Aligned_cols=132  Identities=18%  Similarity=0.173  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccc-----cccccccc
Q psy7829         357 ERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHI-----DLIANETI  431 (511)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v-----~~i~~d~~  431 (511)
                      .++..+.+.-   .++ |++|||+-|-||.+++.+|....  .+|++||.+...+..+.+|+..+++     .++++|..
T Consensus       205 qR~~R~~l~~---~~~-GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf  278 (393)
T COG1092         205 QRDNRRALGE---LAA-GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVF  278 (393)
T ss_pred             hHHHHHHHhh---hcc-CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHH
Confidence            3555555543   334 99999999999999999986542  5999999999888888888887664     68899988


Q ss_pred             cccc------ccchhhhhcccC---CcEE-EEEcCCccHHHHHHHHHhCCCcEEEEh--------HHHHHHHHHHHHhcC
Q psy7829         432 EIIP------HILDLCYLNLHR---GAKV-LEIGSGSGYLATLMAHLVGPTGHVTGL--------EHMMDIAIESIANIS  493 (511)
Q Consensus       432 ~~l~------~~~d~i~~~l~~---~~~v-LD~~~g~g~~~~~l~~~l~~~g~v~~~--------~~ml~~a~~~~~~~~  493 (511)
                      +++.      ..+|.++.+++.   +... -++.-+-..+.....+.|+|+|.++.+        +.+++...+.+...+
T Consensus       279 ~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~  358 (393)
T COG1092         279 KWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAG  358 (393)
T ss_pred             HHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcC
Confidence            8764      257777776542   1122 222333444555667788999998876        566666666666655


Q ss_pred             C
Q psy7829         494 T  494 (511)
Q Consensus       494 ~  494 (511)
                      .
T Consensus       359 ~  359 (393)
T COG1092         359 R  359 (393)
T ss_pred             C
Confidence            4

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.70  E-value=4e-05  Score=68.33  Aligned_cols=62  Identities=15%  Similarity=0.249  Sum_probs=52.6

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST  420 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~  420 (511)
                      -..|...+.++..  +...+-.++||+|||||-.+..+-...   .+++|+|+|..|++++.++-.+
T Consensus       108 Y~vP~~l~emI~~--~~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg~Y  169 (287)
T COG4976         108 YSVPELLAEMIGK--ADLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKGLY  169 (287)
T ss_pred             CccHHHHHHHHHh--ccCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhccch
Confidence            3577888888887  666678899999999999999987776   7999999999999998877543

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=97.69  E-value=6.2e-05  Score=68.37  Aligned_cols=54  Identities=24%  Similarity=0.406  Sum_probs=42.1

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccc
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANET  430 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~  430 (511)
                      ++++.+|||+|||+|.++..+++..+  ..++++|+++++++.+.++    +++++.++.
T Consensus        11 i~~~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~~----~~~~~~~d~   64 (194)
T TIGR02081        11 IPPGSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVAR----GVNVIQGDL   64 (194)
T ss_pred             cCCCCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHHc----CCeEEEEEh
Confidence            35788999999999999998886643  6789999999988877542    355665554

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=97.68  E-value=0.00047  Score=58.57  Aligned_cols=75  Identities=19%  Similarity=0.291  Sum_probs=61.4

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIE  432 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~  432 (511)
                      |++...+++|...  .+.+.|.-|||+|.|||.+|..+.+..-+...+++||.+.+.+..-.+...  .+.++++|+..
T Consensus        31 PsSs~lA~~M~s~--I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p--~~~ii~gda~~  105 (194)
T COG3963          31 PSSSILARKMASV--IDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP--GVNIINGDAFD  105 (194)
T ss_pred             CCcHHHHHHHHhc--cCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC--Cccccccchhh
Confidence            5577888888876  888899999999999999998877766567899999999999987766654  45588887654

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.68  E-value=8e-05  Score=64.20  Aligned_cols=92  Identities=27%  Similarity=0.296  Sum_probs=72.1

Q ss_pred             CCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEe
Q psy7829         134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYY  213 (511)
Q Consensus       134 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~  213 (511)
                      .+.+.|+|+|||.++...|+..   -+|++++.+|.....|++|+.-.     +..|++++.+|+....+  ...|+|+|
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~-----g~~n~evv~gDA~~y~f--e~ADvvic  102 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVP-----GDVNWEVVVGDARDYDF--ENADVVIC  102 (252)
T ss_pred             hhceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCC-----CCcceEEEecccccccc--cccceeHH
Confidence            3679999999999999888874   36999999999999999998664     46789999999986433  45688877


Q ss_pred             cCCC--------CchHHHHHhhcccCcEEE
Q psy7829         214 GGCV--------SEVPSRVLNQLKKGGRIL  235 (511)
Q Consensus       214 ~~~~--------~~~~~~~~~~LkpgG~l~  235 (511)
                      -.--        -.+...+.+.||-.+.++
T Consensus       103 EmlDTaLi~E~qVpV~n~vleFLr~d~tii  132 (252)
T COG4076         103 EMLDTALIEEKQVPVINAVLEFLRYDPTII  132 (252)
T ss_pred             HHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence            4221        123367778899998885

>KOG1709|consensus

Probab=97.68  E-value=0.0007  Score=59.94  Aligned_cols=101  Identities=23%  Similarity=0.307  Sum_probs=74.1

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC--CCCCCcc
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY--LPEAPYD  209 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD  209 (511)
                      .+|.+||+||-|-|.....+-++ .|.. =+.||.+++.++.-++..-.      ..+||.+..+-.++..  .+++.||
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~-~p~~-H~IiE~hp~V~krmr~~gw~------ek~nViil~g~WeDvl~~L~d~~FD  171 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEA-PPDE-HWIIEAHPDVLKRMRDWGWR------EKENVIILEGRWEDVLNTLPDKHFD  171 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhc-CCcc-eEEEecCHHHHHHHHhcccc------cccceEEEecchHhhhccccccCcc
Confidence            57999999999999988887776 3544 45689999999887776433      4568888887655322  2357799


Q ss_pred             EEEecCCC------CchHHHHHhhcccCcEEEEEEcc
Q psy7829         210 VIYYGGCV------SEVPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       210 ~I~~~~~~------~~~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      -|+.+.--      .++.+.+.++|||+|.+-+--+.
T Consensus       172 GI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~  208 (271)
T KOG1709|consen  172 GIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGL  208 (271)
T ss_pred             eeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCc
Confidence            99987542      23457889999999998774443

>KOG1271|consensus

Probab=97.67  E-value=0.00018  Score=61.84  Aligned_cols=73  Identities=18%  Similarity=0.217  Sum_probs=48.5

Q ss_pred             HHHHHHHHHhh-cCCCC-CCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHH---hhccccc-ccccccccc
Q psy7829         358 RSIAHILDLCY-LNLHR-GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESI---ANISTNH-IDLIANETI  431 (511)
Q Consensus       358 ~~~~~~~~~~~-~~~~~-~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~---~~~~~~~-v~~i~~d~~  431 (511)
                      +.+..++.... .++.+ .++|||+|||.|.+...|++..- ++..+|+|.++..++.|.   ++-+.+| |+|.+.|..
T Consensus        50 riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~  128 (227)
T KOG1271|consen   50 RIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDIT  128 (227)
T ss_pred             HHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeecc
Confidence            44444444311 22343 44999999999999999998753 377999999987776643   3334444 777666643

>KOG3191|consensus

Probab=97.63  E-value=0.0003  Score=60.61  Aligned_cols=57  Identities=25%  Similarity=0.433  Sum_probs=45.3

Q ss_pred             CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccc--ccccccc
Q psy7829         373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH--IDLIANE  429 (511)
Q Consensus       373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~--v~~i~~d  429 (511)
                      ....++|||||||..+..+++..+|+....++|++++.++...+....+.  +++++.|
T Consensus        43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~td  101 (209)
T KOG3191|consen   43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTD  101 (209)
T ss_pred             CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehh
Confidence            47789999999999999999999888999999999988886555444333  4455555

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=97.62  E-value=6.2e-05  Score=67.85  Aligned_cols=76  Identities=24%  Similarity=0.277  Sum_probs=48.4

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccc----ccccccccccccc-ccchhhhhc
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH----IDLIANETIEIIP-HILDLCYLN  444 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~----v~~i~~d~~~~l~-~~~d~i~~~  444 (511)
                      .+.++++|+|+.||.|++++.+|+.. ....|+|+|++++.++...+|+..++    +..+++|..+.++ ..+|.+.++
T Consensus        98 ~v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~  176 (200)
T PF02475_consen   98 LVKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMN  176 (200)
T ss_dssp             C--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE-
T ss_pred             cCCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEEC
Confidence            36789999999999999999999854 44789999999888887777666544    4566788776663 445544444


Q ss_pred             cc
Q psy7829         445 LH  446 (511)
Q Consensus       445 l~  446 (511)
                      ++
T Consensus       177 lp  178 (200)
T PF02475_consen  177 LP  178 (200)
T ss_dssp             -T
T ss_pred             Ch
Confidence            43

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.61  E-value=0.00021  Score=61.34  Aligned_cols=59  Identities=27%  Similarity=0.404  Sum_probs=50.2

Q ss_pred             EEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829         136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE  200 (511)
Q Consensus       136 ~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  200 (511)
                      .+||+|||.|..+..+++.. +.++++++|.++.+.+.++++++.++     .++++++...+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~-----~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNN-----LPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcC-----CCcEEEEEeeeeC
Confidence            38999999999999999885 77799999999999999999998764     3468888777643

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.59  E-value=0.00046  Score=65.74  Aligned_cols=100  Identities=16%  Similarity=0.222  Sum_probs=55.0

Q ss_pred             HHHHHHHHHhhcC---CCCCEEEEEcCCccHH-HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhcc-CCCcCCCCCeEE
Q psy7829         119 QIADAAENLKLHL---VDGAKVLDLGSGSGYQ-TCVFAHMVGPTGKVIGVEHIPELIEASLRNISKG-NKDLLDSGRVRI  193 (511)
Q Consensus       119 ~~~~~~~~l~~~~---~~~~~vLDiG~G~G~~-~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~~~~~v~~  193 (511)
                      ...++.++|....   ....++||||||.-.+ .+..++.+  +.+++|.|+++..++.|+++++.+ +    ..++|++
T Consensus        85 Yi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~--~W~fvaTdID~~sl~~A~~nv~~N~~----L~~~I~l  158 (299)
T PF05971_consen   85 YIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLY--GWSFVATDIDPKSLESARENVERNPN----LESRIEL  158 (299)
T ss_dssp             HHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-----TTTEEE
T ss_pred             HHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhc--CCeEEEecCCHHHHHHHHHHHHhccc----cccceEE
Confidence            3344555554211   1245899999998765 45555554  689999999999999999999998 4    5668888


Q ss_pred             EEccCC----CCC-CCCCCccEEEecCCCCchHHHH
Q psy7829         194 VEADAR----EGY-LPEAPYDVIYYGGCVSEVPSRV  224 (511)
Q Consensus       194 ~~~d~~----~~~-~~~~~fD~I~~~~~~~~~~~~~  224 (511)
                      +...-.    ... .....||+.+|+++++.-.+++
T Consensus       159 ~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~s~~e~  194 (299)
T PF05971_consen  159 RKQKNPDNIFDGIIQPNERFDFTMCNPPFYSSQEEA  194 (299)
T ss_dssp             EE--ST-SSTTTSTT--S-EEEEEE-----SS----
T ss_pred             EEcCCccccchhhhcccceeeEEecCCccccChhhh
Confidence            765422    211 1235799999999997655443

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG1269|consensus

Probab=97.57  E-value=0.00015  Score=71.44  Aligned_cols=108  Identities=20%  Similarity=0.239  Sum_probs=83.4

Q ss_pred             HHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCC
Q psy7829         125 ENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLP  204 (511)
Q Consensus       125 ~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  204 (511)
                      ..+.+...++.+++|+|||.|..+..++...  ...++|+|.++..+..+........    ...+-.++.+|+.+.+++
T Consensus       102 ~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~----l~~k~~~~~~~~~~~~fe  175 (364)
T KOG1269|consen  102 VALRESCFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAY----LDNKCNFVVADFGKMPFE  175 (364)
T ss_pred             HHHhhcCcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHH----hhhhcceehhhhhcCCCC
Confidence            3444456788899999999999999998874  4579999999988877776655443    222344588888888778


Q ss_pred             CCCccEEEecCCCCch------HHHHHhhcccCcEEEEEE
Q psy7829         205 EAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       205 ~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~  238 (511)
                      ++.||.+.+.....+.      .+++++++||||.++...
T Consensus       176 dn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e  215 (364)
T KOG1269|consen  176 DNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKE  215 (364)
T ss_pred             ccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHH
Confidence            8999999887666544      378999999999998853

>PRK10742 putative methyltransferase; Provisional

Probab=97.57  E-value=0.00027  Score=65.16  Aligned_cols=92  Identities=16%  Similarity=0.228  Sum_probs=69.3

Q ss_pred             HHHHHhhcCCCCC--EEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCC-CcCC---CCCeEEEEc
Q psy7829         123 AAENLKLHLVDGA--KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK-DLLD---SGRVRIVEA  196 (511)
Q Consensus       123 ~~~~l~~~~~~~~--~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-~~~~---~~~v~~~~~  196 (511)
                      ++..+.  +++|.  +|||+-+|+|..+..++...   ++|+++|.++.+....++++++... ..+.   ..+++++++
T Consensus        78 l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~G---~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~  152 (250)
T PRK10742         78 VAKAVG--IKGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA  152 (250)
T ss_pred             HHHHhC--CCCCCCCEEEECCCCccHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence            344443  67777  89999999999999999873   3599999999999999998887310 0011   257999999


Q ss_pred             cCCCCCC-CCCCccEEEecCCCCc
Q psy7829         197 DAREGYL-PEAPYDVIYYGGCVSE  219 (511)
Q Consensus       197 d~~~~~~-~~~~fD~I~~~~~~~~  219 (511)
                      |...... ...+||+|+.++++++
T Consensus       153 da~~~L~~~~~~fDVVYlDPMfp~  176 (250)
T PRK10742        153 SSLTALTDITPRPQVVYLDPMFPH  176 (250)
T ss_pred             cHHHHHhhCCCCCcEEEECCCCCC
Confidence            9865332 1247999999999965

>KOG2730|consensus

Probab=97.56  E-value=0.00011  Score=65.16  Aligned_cols=78  Identities=19%  Similarity=0.172  Sum_probs=62.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC----CCCCc
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL----PEAPY  208 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~f  208 (511)
                      ....|+|.-||.|+.++.++..+.   .|++||++|.-+..|++|++-.|    ..++|+|++||+.+...    ....+
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNaeiYG----I~~rItFI~GD~ld~~~~lq~~K~~~  166 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAEVYG----VPDRITFICGDFLDLASKLKADKIKY  166 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhccceeec----CCceeEEEechHHHHHHHHhhhhhee
Confidence            566899999999999999998874   49999999999999999999987    35699999999874321    12346


Q ss_pred             cEEEecCCC
Q psy7829         209 DVIYYGGCV  217 (511)
Q Consensus       209 D~I~~~~~~  217 (511)
                      |+|+.+++.
T Consensus       167 ~~vf~sppw  175 (263)
T KOG2730|consen  167 DCVFLSPPW  175 (263)
T ss_pred             eeeecCCCC
Confidence            777776654

>KOG4589|consensus

Probab=97.55  E-value=0.00018  Score=62.12  Aligned_cols=97  Identities=24%  Similarity=0.320  Sum_probs=67.6

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc-cCCCCC-------
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA-DAREGY-------  202 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-d~~~~~-------  202 (511)
                      ++|+++|||+||.+|.++...-++.+|++.|.|+|+-.-         .       ..+.++++++ |+.++.       
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~---------~-------p~~Ga~~i~~~dvtdp~~~~ki~e  130 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI---------E-------PPEGATIIQGNDVTDPETYRKIFE  130 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec---------c-------CCCCcccccccccCCHHHHHHHHH
Confidence            678999999999999999999999999999999998421         1       1223556665 554211       


Q ss_pred             -CCCCCccEEEecCCCCc-----------------hHHHHHhhcccCcEEEEEEccCCC
Q psy7829         203 -LPEAPYDVIYYGGCVSE-----------------VPSRVLNQLKKGGRILAPIGPMDD  243 (511)
Q Consensus       203 -~~~~~fD~I~~~~~~~~-----------------~~~~~~~~LkpgG~l~~~~~~~~~  243 (511)
                       .+....|+|+++.....                 .+.-....++|+|.+++-++....
T Consensus       131 ~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e  189 (232)
T KOG4589|consen  131 ALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE  189 (232)
T ss_pred             hCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence             13366899988754311                 112234677899999997765443

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=97.55  E-value=0.00032  Score=64.59  Aligned_cols=111  Identities=15%  Similarity=0.197  Sum_probs=71.7

Q ss_pred             CHHHHHHHHHHhhcCCC---CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccc
Q psy7829         356 SERSIAHILDLCYLNLH---RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIE  432 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~---~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~  432 (511)
                      +.....+++........   ...++||||+|.|..|..++..+   .+|++.|.+..|...-.+    .+.+++..+...
T Consensus        74 S~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~----kg~~vl~~~~w~  146 (265)
T PF05219_consen   74 SEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSK----KGFTVLDIDDWQ  146 (265)
T ss_pred             cHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHh----CCCeEEehhhhh
Confidence            44556566664222222   46789999999999999999998   789999999888554322    222333222222


Q ss_pred             cccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         433 IIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       433 ~l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..+..+|.|-.     -.+||=|--+-.+...+.+.++|+|+++..
T Consensus       147 ~~~~~fDvIsc-----LNvLDRc~~P~~LL~~i~~~l~p~G~lilA  187 (265)
T PF05219_consen  147 QTDFKFDVISC-----LNVLDRCDRPLTLLRDIRRALKPNGRLILA  187 (265)
T ss_pred             ccCCceEEEee-----hhhhhccCCHHHHHHHHHHHhCCCCEEEEE
Confidence            11223443322     136777778888889999999999987543

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=97.55  E-value=0.00037  Score=69.76  Aligned_cols=61  Identities=20%  Similarity=0.095  Sum_probs=48.2

Q ss_pred             CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccc---cccccccccccc
Q psy7829         373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH---IDLIANETIEII  434 (511)
Q Consensus       373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~---v~~i~~d~~~~l  434 (511)
                      ++.+|||++||+|..++.+|...+ ..+|+++|++++.++.+++|+..++   ++++++|....+
T Consensus        57 ~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l  120 (382)
T PRK04338         57 PRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALL  120 (382)
T ss_pred             CCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHH
Confidence            357899999999999999998774 2589999999998888888776544   446777765444

>KOG1122|consensus

Probab=97.51  E-value=0.00056  Score=66.75  Aligned_cols=88  Identities=15%  Similarity=0.203  Sum_probs=66.4

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHH---HHHhhccccccccccccccccccccchhhhhcc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAI---ESIANISTNHIDLIANETIEIIPHILDLCYLNL  445 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~---~~~~~~~~~~v~~i~~d~~~~l~~~~d~i~~~l  445 (511)
                      +..++|.+|||+.+.+|.-|..+|..++..|.|+|.|.+...++   .+..+++..|..+.+.|..++-...+    .. 
T Consensus       237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~----~~-  311 (460)
T KOG1122|consen  237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEF----PG-  311 (460)
T ss_pred             cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccccccc----Cc-
Confidence            67789999999999999999999999988999999998765555   56667778887777777665432221    11 


Q ss_pred             cCCcEEEEEcC-CccHH
Q psy7829         446 HRGAKVLEIGS-GSGYL  461 (511)
Q Consensus       446 ~~~~~vLD~~~-g~g~~  461 (511)
                      ..+...||..| |||.+
T Consensus       312 ~fDRVLLDAPCSGtgvi  328 (460)
T KOG1122|consen  312 SFDRVLLDAPCSGTGVI  328 (460)
T ss_pred             ccceeeecCCCCCCccc
Confidence            23456778888 77766

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=97.49  E-value=0.00013  Score=67.12  Aligned_cols=56  Identities=25%  Similarity=0.328  Sum_probs=44.4

Q ss_pred             CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHh
Q psy7829         355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA  416 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~  416 (511)
                      .+|..+.. +..  +..+++.+||..|||.|+...+||...   -+|+|+|+++..++++.+
T Consensus        22 ~~p~L~~~-~~~--l~~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~   77 (218)
T PF05724_consen   22 PNPALVEY-LDS--LALKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFE   77 (218)
T ss_dssp             STHHHHHH-HHH--HTTSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHH
T ss_pred             CCHHHHHH-HHh--cCCCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHH
Confidence            45666644 443  567888999999999999999999764   799999999998888743

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.49  E-value=0.00039  Score=60.51  Aligned_cols=103  Identities=27%  Similarity=0.304  Sum_probs=63.7

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHH----HHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCC
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPEL----IEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEA  206 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~----~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  206 (511)
                      ++++..|+|+=.|.|+++..++..+++.+.|+++-..+..    .+..+.+.....   -...|++.+-.+..... ...
T Consensus        46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e---~~~aN~e~~~~~~~A~~-~pq  121 (238)
T COG4798          46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAARE---PVYANVEVIGKPLVALG-APQ  121 (238)
T ss_pred             cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhh---hhhhhhhhhCCcccccC-CCC
Confidence            7899999999999999999999999999999998543321    111111100000   02234554444443322 224


Q ss_pred             CccEEEecCCCC-------------chHHHHHhhcccCcEEEEE
Q psy7829         207 PYDVIYYGGCVS-------------EVPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       207 ~fD~I~~~~~~~-------------~~~~~~~~~LkpgG~l~~~  237 (511)
                      ..|+++.....+             .+...+++.|||||.+++.
T Consensus       122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~  165 (238)
T COG4798         122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVE  165 (238)
T ss_pred             cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEE
Confidence            455554433222             2337899999999999884

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.46  E-value=0.00074  Score=60.18  Aligned_cols=109  Identities=22%  Similarity=0.287  Sum_probs=72.2

Q ss_pred             EEEEEeccccHHHHHHHHHhCCCcEEEEEcCCH---HHHHHHHhhccccccccccccccc-cccccchhhhhcccCCcEE
Q psy7829         376 KVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMM---DIAIESIANISTNHIDLIANETIE-IIPHILDLCYLNLHRGAKV  451 (511)
Q Consensus       376 ~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~---~~~~~~~~~~~~~~v~~i~~d~~~-~l~~~~d~i~~~l~~~~~v  451 (511)
                      +++|||||.|.=++.+|-.. |+.+++-+|.+.   ...+.....++.+|++++++...+ .....+|.+.+.-      
T Consensus        51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRA------  123 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARA------  123 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEES------
T ss_pred             eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeeh------
Confidence            89999999999999998666 889999999884   555677888999999999876544 2333343332211      


Q ss_pred             EEEcCCccHHHHHHHHHhCCCcEEEEh-----HHHHHHHHHHHHhcCC
Q psy7829         452 LEIGSGSGYLATLMAHLVGPTGHVTGL-----EHMMDIAIESIANIST  494 (511)
Q Consensus       452 LD~~~g~g~~~~~l~~~l~~~g~v~~~-----~~ml~~a~~~~~~~~~  494 (511)
                         -+....+.....+.++++|.++..     .+=++.+++.....+.
T Consensus       124 ---v~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~  168 (184)
T PF02527_consen  124 ---VAPLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGL  168 (184)
T ss_dssp             ---SSSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCE
T ss_pred             ---hcCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCC
Confidence               122334445555667889998888     3334556666666554

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.45  E-value=0.0047  Score=56.50  Aligned_cols=119  Identities=18%  Similarity=0.172  Sum_probs=68.9

Q ss_pred             hhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEE
Q psy7829         116 APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE  195 (511)
Q Consensus       116 ~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  195 (511)
                      ......+++-.+...--.|.+||-+|=.- ..|++++.. +...+|+.+|+++..++..++.+++.|     . +|+.+.
T Consensus        27 ~eT~~~Ra~~~~~~gdL~gk~il~lGDDD-LtSlA~al~-~~~~~I~VvDiDeRll~fI~~~a~~~g-----l-~i~~~~   98 (243)
T PF01861_consen   27 PETTLRRAALMAERGDLEGKRILFLGDDD-LTSLALALT-GLPKRITVVDIDERLLDFINRVAEEEG-----L-PIEAVH   98 (243)
T ss_dssp             HHHHHHHHHHHHHTT-STT-EEEEES-TT--HHHHHHHH-T--SEEEEE-S-HHHHHHHHHHHHHHT--------EEEE-
T ss_pred             HHHHHHHHHHHHhcCcccCCEEEEEcCCc-HHHHHHHhh-CCCCeEEEEEcCHHHHHHHHHHHHHcC-----C-ceEEEE
Confidence            33445554444442223689999988332 345555544 355789999999999999999998865     3 399999


Q ss_pred             ccCCCCCCC--CCCccEEEecCCCC-----chHHHHHhhcccCc-EEEEEEccCC
Q psy7829         196 ADAREGYLP--EAPYDVIYYGGCVS-----EVPSRVLNQLKKGG-RILAPIGPMD  242 (511)
Q Consensus       196 ~d~~~~~~~--~~~fD~I~~~~~~~-----~~~~~~~~~LkpgG-~l~~~~~~~~  242 (511)
                      .|+..++++  .++||+++.+++.-     -+..+..+.||..| ..++.+....
T Consensus        99 ~DlR~~LP~~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~  153 (243)
T PF01861_consen   99 YDLRDPLPEELRGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKE  153 (243)
T ss_dssp             --TTS---TTTSS-BSEEEE---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT
T ss_pred             ecccccCCHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCc
Confidence            999987765  38999999998873     23477788888766 6677666554

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.41  E-value=0.0012  Score=59.36  Aligned_cols=127  Identities=20%  Similarity=0.322  Sum_probs=71.0

Q ss_pred             CHHHHHHHHHHh-hcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHH----HHhhccccccccccccc
Q psy7829         356 SERSIAHILDLC-YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE----SIANISTNHIDLIANET  430 (511)
Q Consensus       356 ~~~~~~~~~~~~-~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~----~~~~~~~~~v~~i~~d~  430 (511)
                      ..+..+.++.-. .+.+++|.+||-+|+++|...-.++..++++|.|+|+|.++...+.    +.++   +|+--+..|+
T Consensus        55 RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DA  131 (229)
T PF01269_consen   55 RSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDA  131 (229)
T ss_dssp             T-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-T
T ss_pred             hhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccC
Confidence            445555554432 2678899999999999999999999999999999999998654443    3332   3444333333


Q ss_pred             cc-----cccccchhhhhcccCCcEEEEEcC-CccHHH-HHHHHHhCCCcEEEEh------------HHHHHHHHHHHHh
Q psy7829         431 IE-----IIPHILDLCYLNLHRGAKVLEIGS-GSGYLA-TLMAHLVGPTGHVTGL------------EHMMDIAIESIAN  491 (511)
Q Consensus       431 ~~-----~l~~~~d~i~~~l~~~~~vLD~~~-g~g~~~-~~l~~~l~~~g~v~~~------------~~ml~~a~~~~~~  491 (511)
                      ..     .+-...|.++         .|+.- +...+. ......|+++|+++..            +.....-.+++++
T Consensus       132 r~P~~Y~~lv~~VDvI~---------~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~  202 (229)
T PF01269_consen  132 RHPEKYRMLVEMVDVIF---------QDVAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKE  202 (229)
T ss_dssp             TSGGGGTTTS--EEEEE---------EE-SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHC
T ss_pred             CChHHhhcccccccEEE---------ecCCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHH
Confidence            21     1112334333         34432 122222 2333467999987755            3444555566666


Q ss_pred             cCC
Q psy7829         492 IST  494 (511)
Q Consensus       492 ~~~  494 (511)
                      .++
T Consensus       203 ~~~  205 (229)
T PF01269_consen  203 EGF  205 (229)
T ss_dssp             TTC
T ss_pred             cCC
Confidence            555

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG2187|consensus

Probab=97.41  E-value=0.00031  Score=70.36  Aligned_cols=67  Identities=21%  Similarity=0.352  Sum_probs=54.9

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccccccccccc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEIIPHIL  438 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~l~~~~  438 (511)
                      +.++.+..+||+.||||.+++.+|+.+   .+|+|||++++.+.-|.+|..   ..|.+|+++-+.+.++.++
T Consensus       379 ~~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~  448 (534)
T KOG2187|consen  379 AGLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLL  448 (534)
T ss_pred             hCCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhc
Confidence            778888999999999999999999988   899999999888777766654   6677899886555555443

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.39  E-value=0.0007  Score=65.19  Aligned_cols=86  Identities=23%  Similarity=0.256  Sum_probs=62.6

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      +.+|.++||+||++|.++..+.++.   .+|++||..+- -    ..+.       ..++|.....|.....+..+.+|.
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~rG---~~V~AVD~g~l-~----~~L~-------~~~~V~h~~~d~fr~~p~~~~vDw  273 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRRG---MFVTAVDNGPM-A----QSLM-------DTGQVEHLRADGFKFRPPRKNVDW  273 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHcC---CEEEEEechhc-C----Hhhh-------CCCCEEEEeccCcccCCCCCCCCE
Confidence            3589999999999999999999874   37999996542 1    1222       345899999998764433578999


Q ss_pred             EEecCCCC--chHHHHHhhcccC
Q psy7829         211 IYYGGCVS--EVPSRVLNQLKKG  231 (511)
Q Consensus       211 I~~~~~~~--~~~~~~~~~Lkpg  231 (511)
                      ++|+....  .+.+-+.++|..|
T Consensus       274 vVcDmve~P~rva~lm~~Wl~~g  296 (357)
T PRK11760        274 LVCDMVEKPARVAELMAQWLVNG  296 (357)
T ss_pred             EEEecccCHHHHHHHHHHHHhcC
Confidence            99997764  2345566666555

>PRK11524 putative methyltransferase; Provisional

Probab=97.38  E-value=0.0024  Score=61.65  Aligned_cols=224  Identities=13%  Similarity=0.027  Sum_probs=0.0

Q ss_pred             CCCCCeEEEEccCCCC--CCCCCCccEEEecCCCCc----------------------hHHHHHhhcccCcEEEEEEccC
Q psy7829         186 LDSGRVRIVEADAREG--YLPEAPYDVIYYGGCVSE----------------------VPSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       186 ~~~~~v~~~~~d~~~~--~~~~~~fD~I~~~~~~~~----------------------~~~~~~~~LkpgG~l~~~~~~~  241 (511)
                      +...+.+++++|..+.  ..++++||+|++++++..                      .+.++.++|||||.+++.+...
T Consensus         4 ~~~~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~   83 (284)
T PRK11524          4 FGNEAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTE   83 (284)
T ss_pred             ccCCCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCch


Q ss_pred             CCcceEEEEEEecCCeEEEEeecceEEEecccccccccccccccCccccccccccccchhhHHHHhhhhhccCCCcccCc
Q psy7829         242 DDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDPVDENLFTLMDKDSDELFSERVWELKQDPLYTTEK  321 (511)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~  321 (511)
                      ............    +......-.....-................+....-....-.......+........-......
T Consensus        84 ~~~~~~~~~~~~----f~~~~~iiW~k~~~~~~~~~~~~~~~e~i~~~~K~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  159 (284)
T PRK11524         84 NMPFIDLYCRKL----FTIKSRIVWSYDSSGVQAKKYFGSMYEPILMMVKDAKNYTFNGDAILVEAKTGAKRALIDYRKN  159 (284)
T ss_pred             hhhHHHHHHhcC----cceEEEEEEEeCCCCCcccCcCCCCccEEEEEEcCcccccccHHHhcccccccchhcccccccc


Q ss_pred             cccCCCCCCCCCceeeeccccccccCCCCCCCCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEE
Q psy7829         322 WIPQPPGYTTPGEITTRDKYGRLVHGSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHV  401 (511)
Q Consensus       322 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v  401 (511)
                      ..........++.+=....-............+-+.....+++..   --.+|+.|||--+|||..++++.+..   -+.
T Consensus       160 ~~~~~~~~~~~~~vw~~~~~~~~~~~~~~HPt~kP~~L~erlI~~---~S~~GD~VLDPF~GSGTT~~AA~~lg---R~~  233 (284)
T PRK11524        160 PPQPYNTQKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILA---SSNPGDIVLDPFAGSFTTGAVAKASG---RKF  233 (284)
T ss_pred             ccccCCCCCCCCCEEEeCCccccccccccCcccChHHHHHHHHHH---hCCCCCEEEECCCCCcHHHHHHHHcC---CCE


Q ss_pred             EEEcCCHHHHHHHHhhcc
Q psy7829         402 TGLEHMMDIAIESIANIS  419 (511)
Q Consensus       402 ~~id~~~~~~~~~~~~~~  419 (511)
                      +|+|++++.++.+.+++.
T Consensus       234 IG~Ei~~~Y~~~a~~Rl~  251 (284)
T PRK11524        234 IGIEINSEYIKMGLRRLD  251 (284)
T ss_pred             EEEeCCHHHHHHHHHHHH

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.38  E-value=0.00022  Score=61.51  Aligned_cols=56  Identities=20%  Similarity=0.317  Sum_probs=49.0

Q ss_pred             CCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccccc
Q psy7829         374 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIE  432 (511)
Q Consensus       374 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~  432 (511)
                      .+.+.|+|+|||.++..+|+..   .+|++||.++..++.+.+|+.   ..|++++.+|+..
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~   91 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARD   91 (252)
T ss_pred             hhceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccc
Confidence            4789999999999999999886   799999999999999999864   5778999888644

>KOG2730|consensus

Probab=97.36  E-value=0.0002  Score=63.59  Aligned_cols=76  Identities=12%  Similarity=0.061  Sum_probs=58.7

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----cccccccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETI  431 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~  431 (511)
                      +|+.++..+.......-....|+|.-||.|..++..|..+   ..|++||+|+..+..++.|++    .+.|+|++||.+
T Consensus        77 Tpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~l  153 (263)
T KOG2730|consen   77 TPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFL  153 (263)
T ss_pred             ccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCceeEEEechHH
Confidence            4555555555433333367889999999999999999887   799999999988888888877    356899999976


Q ss_pred             ccc
Q psy7829         432 EII  434 (511)
Q Consensus       432 ~~l  434 (511)
                      +..
T Consensus       154 d~~  156 (263)
T KOG2730|consen  154 DLA  156 (263)
T ss_pred             HHH
Confidence            653

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.35  E-value=0.0025  Score=55.59  Aligned_cols=99  Identities=27%  Similarity=0.374  Sum_probs=66.2

Q ss_pred             EEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC--CCCCC-CCccEEEe
Q psy7829         137 VLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE--GYLPE-APYDVIYY  213 (511)
Q Consensus       137 vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~-~~fD~I~~  213 (511)
                      ++|+|||+|... .++........++++|+++.++..++..... .    ....+.+...|...  ..... ..||++..
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  125 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A----GLGLVDFVVADALGGVLPFEDSASFDLVIS  125 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c----CCCceEEEEeccccCCCCCCCCCceeEEee
Confidence            999999999987 4444432123789999999999885554322 1    11116788888765  22232 37999944


Q ss_pred             cCCC-----CchHHHHHhhcccCcEEEEEEccC
Q psy7829         214 GGCV-----SEVPSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       214 ~~~~-----~~~~~~~~~~LkpgG~l~~~~~~~  241 (511)
                      ....     ......+.+.|+|+|.+++.....
T Consensus       126 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~  158 (257)
T COG0500         126 LLVLHLLPPAKALRELLRVLKPGGRLVLSDLLR  158 (257)
T ss_pred             eeehhcCCHHHHHHHHHHhcCCCcEEEEEeccC
Confidence            3333     345578999999999999875543

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.34  E-value=0.0017  Score=62.09  Aligned_cols=84  Identities=23%  Similarity=0.339  Sum_probs=55.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY  212 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~  212 (511)
                      ...+|||+|||+|..+..+...++...+++++|.|+.|++.++.-+....    ....... ..+......+....|+|+
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~----~~~~~~~-~~~~~~~~~~~~~~DLvi  107 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP----NNRNAEW-RRVLYRDFLPFPPDDLVI  107 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc----ccccchh-hhhhhcccccCCCCcEEE
Confidence            45689999999998887777777555679999999999999988766531    1111111 111111111123349999


Q ss_pred             ecCCCCchH
Q psy7829         213 YGGCVSEVP  221 (511)
Q Consensus       213 ~~~~~~~~~  221 (511)
                      ++.++.++.
T Consensus       108 ~s~~L~EL~  116 (274)
T PF09243_consen  108 ASYVLNELP  116 (274)
T ss_pred             EehhhhcCC
Confidence            998886654

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>KOG3115|consensus

Probab=97.27  E-value=0.00098  Score=58.48  Aligned_cols=115  Identities=15%  Similarity=0.288  Sum_probs=72.5

Q ss_pred             CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCH---HHHHHHHhhcc-------ccccccccccccccccccchhh-
Q psy7829         373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMM---DIAIESIANIS-------TNHIDLIANETIEIIPHILDLC-  441 (511)
Q Consensus       373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~---~~~~~~~~~~~-------~~~v~~i~~d~~~~l~~~~d~i-  441 (511)
                      ..-.+.|||||.|.+.+.++..+ |+..++|+||..   +.++..++.++       ..|+.++..++...++..|..- 
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgq  138 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQ  138 (249)
T ss_pred             ccceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcc
Confidence            34568999999999999999998 889999999863   33333222222       6778888777777776543221 


Q ss_pred             ------------hhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcC
Q psy7829         442 ------------YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIS  493 (511)
Q Consensus       442 ------------~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~  493 (511)
                                  +...+-.++++     +-.+....+-.++++|.++-+   .+.-+...+.+...+
T Consensus       139 Lskmff~fpdpHfk~~khk~rii-----~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~hp  200 (249)
T KOG3115|consen  139 LSKMFFLFPDPHFKARKHKWRII-----TSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLEEHP  200 (249)
T ss_pred             cccceeecCChhHhhhhccceee-----chhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHhCc
Confidence                        11122233444     234566667778889988877   333333334444433

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.23  E-value=0.00046  Score=59.18  Aligned_cols=52  Identities=19%  Similarity=0.243  Sum_probs=41.3

Q ss_pred             EEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccc
Q psy7829         376 KVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIAN  428 (511)
Q Consensus       376 ~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~  428 (511)
                      ++||+|||.|+.+..+++.. +..+|+++|.++++....++++.   ..++.+++.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~   55 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNA   55 (143)
T ss_pred             CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            48999999999999999876 66799999999988887776654   344565543

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>KOG1331|consensus

Probab=97.22  E-value=0.00026  Score=65.72  Aligned_cols=94  Identities=23%  Similarity=0.338  Sum_probs=73.2

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCe-EEEEccCCCCCCCCCCcc
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRV-RIVEADAREGYLPEAPYD  209 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~fD  209 (511)
                      ...+..++|+|||.|-....     .|...+++.|++...+..+++.            +. ....+|+...+....+||
T Consensus        43 ~~~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~~~ak~~------------~~~~~~~ad~l~~p~~~~s~d  105 (293)
T KOG1331|consen   43 QPTGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLLGGAKRS------------GGDNVCRADALKLPFREESFD  105 (293)
T ss_pred             cCCcceeeecccCCcccCcC-----CCcceeeecchhhhhccccccC------------CCceeehhhhhcCCCCCCccc
Confidence            34688999999999965421     2556789999999988877643            22 577788887776778999


Q ss_pred             EEEecCCCCchH---------HHHHhhcccCcEEEEEEccC
Q psy7829         210 VIYYGGCVSEVP---------SRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       210 ~I~~~~~~~~~~---------~~~~~~LkpgG~l~~~~~~~  241 (511)
                      .+++....+++.         +++.+.|+|||...+.+...
T Consensus       106 ~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~  146 (293)
T KOG1331|consen  106 AALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL  146 (293)
T ss_pred             cchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence            999999988774         67889999999988876543

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.20  E-value=0.001  Score=55.74  Aligned_cols=77  Identities=25%  Similarity=0.354  Sum_probs=54.0

Q ss_pred             eEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC--CCCCCCccEEEecCCC-----Cch----------HH
Q psy7829         160 KVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG--YLPEAPYDVIYYGGCV-----SEV----------PS  222 (511)
Q Consensus       160 ~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~I~~~~~~-----~~~----------~~  222 (511)
                      +|+++|+.+++++.+++++++.+    ..+++++++.+-...  +.+.+++|+++.|..+     +.+          .+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~----~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~   76 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAG----LEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALE   76 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-----GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcC----CCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence            59999999999999999999875    345799998765432  1122589999988654     111          26


Q ss_pred             HHHhhcccCcEEEEEEcc
Q psy7829         223 RVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       223 ~~~~~LkpgG~l~~~~~~  240 (511)
                      .+.+.|+|||.+.+.+++
T Consensus        77 ~al~lL~~gG~i~iv~Y~   94 (140)
T PF06962_consen   77 AALELLKPGGIITIVVYP   94 (140)
T ss_dssp             HHHHHEEEEEEEEEEE--
T ss_pred             HHHHhhccCCEEEEEEeC
Confidence            789999999999998764

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG2361|consensus

Probab=97.17  E-value=0.00055  Score=61.88  Aligned_cols=126  Identities=13%  Similarity=0.047  Sum_probs=70.7

Q ss_pred             CEEEEEeccccHHHHHHHHHhCCC--cEEEEEcCCHHHHHHHHhhccc--ccccccccc----c-ccc-ccccchhhhhc
Q psy7829         375 AKVLEIGSGSGYLATLMAHLVGPT--GHVTGLEHMMDIAIESIANIST--NHIDLIANE----T-IEI-IPHILDLCYLN  444 (511)
Q Consensus       375 ~~vLdiG~G~G~~~~~la~~~~~~--~~v~~id~~~~~~~~~~~~~~~--~~v~~i~~d----~-~~~-l~~~~d~i~~~  444 (511)
                      .+|||||||-|.....+.+.. |+  -+|++.|-++..++.-.++.+.  .++.....|    . ... -+..+|.+.+-
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I  151 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI  151 (264)
T ss_pred             hhheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence            389999999999999988765 54  7899999998777765555442  222211111    1 000 01112221111


Q ss_pred             ccCCcEEEEEcCCccHH-HHHHHHHhCCCcEEEEh-HHHHHHHHHHHHhcCC-CceEEEechHH
Q psy7829         445 LHRGAKVLEIGSGSGYL-ATLMAHLVGPTGHVTGL-EHMMDIAIESIANIST-NHIDLIANETI  505 (511)
Q Consensus       445 l~~~~~vLD~~~g~g~~-~~~l~~~l~~~g~v~~~-~~ml~~a~~~~~~~~~-~~i~~i~~d~~  505 (511)
                          -.+..|+|+-... ...+.+.++|||.++.- =...+.++.+.++... ..-.+|.+|..
T Consensus       152 ----FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT  211 (264)
T KOG2361|consen  152 ----FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGT  211 (264)
T ss_pred             ----EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCc
Confidence                0223345544333 34567778999988766 2223445555554443 34456777754

>KOG4300|consensus

Probab=97.16  E-value=0.00079  Score=59.33  Aligned_cols=93  Identities=19%  Similarity=0.273  Sum_probs=55.6

Q ss_pred             CEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---cccccc-ccccccccccc----ccchhhhhccc
Q psy7829         375 AKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHID-LIANETIEIIP----HILDLCYLNLH  446 (511)
Q Consensus       375 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~-~i~~d~~~~l~----~~~d~i~~~l~  446 (511)
                      ..|||+|||||..--..-.  .|..+|+++|.++.|-+-+.+.+   ...+++ ++.+++.. ++    ...|.+...+ 
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~-l~~l~d~s~DtVV~Tl-  153 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGEN-LPQLADGSYDTVVCTL-  153 (252)
T ss_pred             cceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhc-CcccccCCeeeEEEEE-
Confidence            3489999999997654421  26689999999866655433322   455566 66555432 22    2233222211 


Q ss_pred             CCcEEEEEcCC---ccHHHHHHHHHhCCCcEEEEh
Q psy7829         447 RGAKVLEIGSG---SGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       447 ~~~~vLD~~~g---~g~~~~~l~~~l~~~g~v~~~  478 (511)
                          +|   |.   +-.....+.+.|+|+|+++-+
T Consensus       154 ----vL---CSve~~~k~L~e~~rlLRpgG~iifi  181 (252)
T KOG4300|consen  154 ----VL---CSVEDPVKQLNEVRRLLRPGGRIIFI  181 (252)
T ss_pred             ----EE---eccCCHHHHHHHHHHhcCCCcEEEEE
Confidence                11   33   333456677788999998877

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.15  E-value=0.0011  Score=60.25  Aligned_cols=60  Identities=27%  Similarity=0.339  Sum_probs=43.1

Q ss_pred             CCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Q psy7829         353 GPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESI  415 (511)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~  415 (511)
                      |...+..+..++..  +.+.+++.++|||||.|...+.+|...+ -.+++|||+++..+..+.
T Consensus        24 GEi~~~~~~~il~~--~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~   83 (205)
T PF08123_consen   24 GEISPEFVSKILDE--LNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAE   83 (205)
T ss_dssp             GGCHHHHHHHHHHH--TT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHH
T ss_pred             eecCHHHHHHHHHH--hCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHH
Confidence            35667778888887  7889999999999999999988887763 256999999976666543

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PLN02823 spermine synthase

Probab=97.15  E-value=0.0026  Score=62.35  Aligned_cols=103  Identities=14%  Similarity=0.150  Sum_probs=69.5

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-------cccccccccccccccc---ccchh
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-------TNHIDLIANETIEIIP---HILDL  440 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-------~~~v~~i~~d~~~~l~---~~~d~  440 (511)
                      .+...+||.||+|.|..+..+.+.. +..+|+.+|+++++++.+++.+.       .++++++.+|+...+.   ..+|.
T Consensus       101 ~~~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDv  179 (336)
T PLN02823        101 HPNPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDV  179 (336)
T ss_pred             CCCCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccE
Confidence            3456799999999999999887654 34789999999999999888764       3568888888777654   23555


Q ss_pred             hhhcccCCcEEEEEcCC----ccHHHH-HHHHHhCCCcEEEE
Q psy7829         441 CYLNLHRGAKVLEIGSG----SGYLAT-LMAHLVGPTGHVTG  477 (511)
Q Consensus       441 i~~~l~~~~~vLD~~~g----~g~~~~-~l~~~l~~~g~v~~  477 (511)
                      ++.+......   -+..    +-.+.. .+.+.|+|+|-++.
T Consensus       180 Ii~D~~dp~~---~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~  218 (336)
T PLN02823        180 IIGDLADPVE---GGPCYQLYTKSFYERIVKPKLNPGGIFVT  218 (336)
T ss_pred             EEecCCCccc---cCcchhhccHHHHHHHHHHhcCCCcEEEE
Confidence            5544321100   0000    112333 56678999998763

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=97.14  E-value=0.002  Score=62.61  Aligned_cols=106  Identities=21%  Similarity=0.258  Sum_probs=70.9

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccc----ccccccccccc
Q psy7829         358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH----IDLIANETIEI  433 (511)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~----v~~i~~d~~~~  433 (511)
                      .+-.++..+    ..+|.+|||+-+|.|++|+.+|+...  ..|+|+|++++.++...+|+..+.    ++.+++|+.+.
T Consensus       177 ~ER~Rva~~----v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev  250 (341)
T COG2520         177 TERARVAEL----VKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREV  250 (341)
T ss_pred             HHHHHHHhh----hcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHh
Confidence            334455443    45699999999999999999998874  349999999998888888877555    55678887666


Q ss_pred             ccc--cchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         434 IPH--ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       434 l~~--~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .+.  .+|.+.+++..+.         -.+.....+.++++|.+.-.
T Consensus       251 ~~~~~~aDrIim~~p~~a---------~~fl~~A~~~~k~~g~iHyy  288 (341)
T COG2520         251 APELGVADRIIMGLPKSA---------HEFLPLALELLKDGGIIHYY  288 (341)
T ss_pred             hhccccCCEEEeCCCCcc---------hhhHHHHHHHhhcCcEEEEE
Confidence            554  3555555544431         11223333556666655443

>KOG3178|consensus

Probab=97.14  E-value=0.0019  Score=62.07  Aligned_cols=91  Identities=18%  Similarity=0.216  Sum_probs=71.3

Q ss_pred             CCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEe
Q psy7829         134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYY  213 (511)
Q Consensus       134 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~  213 (511)
                      -...+|+|.|.|..+..+...+ |  ++-+++.+...+..++.++.         +.|+.+-+|..+..+.   -|+|++
T Consensus       178 v~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~---------~gV~~v~gdmfq~~P~---~daI~m  242 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLA---------PGVEHVAGDMFQDTPK---GDAIWM  242 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhc---------CCcceecccccccCCC---cCeEEE
Confidence            3679999999999999998876 5  38888888887777766653         2488889998876432   369998


Q ss_pred             cCCCCc--------hHHHHHhhcccCcEEEEEEc
Q psy7829         214 GGCVSE--------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       214 ~~~~~~--------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      -..+++        +++++++.|+|||.+++.-.
T Consensus       243 kWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~  276 (342)
T KOG3178|consen  243 KWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN  276 (342)
T ss_pred             EeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence            877754        45899999999999998533

>KOG3115|consensus

Probab=97.11  E-value=0.0015  Score=57.38  Aligned_cols=106  Identities=13%  Similarity=0.144  Sum_probs=73.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCC--cCCCCCeEEEEccCCCCCC---CCCC
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKD--LLDSGRVRIVEADAREGYL---PEAP  207 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~v~~~~~d~~~~~~---~~~~  207 (511)
                      ..-.+.|||||-|.+...++..+ |+--+.|.||-....++.++++......  .-...|+.+...+.....+   ..++
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgq  138 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQ  138 (249)
T ss_pred             ccceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcc
Confidence            34569999999999999999998 8889999999999989888887764210  0136678888887764222   2233


Q ss_pred             ccEEEecCCCC--------------chHHHHHhhcccCcEEEEEEc
Q psy7829         208 YDVIYYGGCVS--------------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       208 fD~I~~~~~~~--------------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      .+-.+...+-+              .+..+..-+|++||.++....
T Consensus       139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD  184 (249)
T KOG3115|consen  139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD  184 (249)
T ss_pred             cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence            34343333322              234567778999999987544

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.10  E-value=0.00075  Score=63.56  Aligned_cols=99  Identities=17%  Similarity=0.309  Sum_probs=66.3

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccccccchhhhhcccCC
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIPHILDLCYLNLHRG  448 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l~~~~d~i~~~l~~~  448 (511)
                      ....+..+|+|||.|+|.++..+++.. |+.+++..|. ++.++.+.+   .++++++.+|-.+.+|. .|.++..-   
T Consensus        96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~---~~rv~~~~gd~f~~~P~-~D~~~l~~---  166 (241)
T PF00891_consen   96 FDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE---ADRVEFVPGDFFDPLPV-ADVYLLRH---  166 (241)
T ss_dssp             STTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH---TTTEEEEES-TTTCCSS-ESEEEEES---
T ss_pred             ccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc---ccccccccccHHhhhcc-ccceeeeh---
Confidence            566778899999999999999999998 8899999998 555555555   67788888887666665 44433211   


Q ss_pred             cEEE-EEcC-CccHHHHHHHHHhCCC--cEEEEh
Q psy7829         449 AKVL-EIGS-GSGYLATLMAHLVGPT--GHVTGL  478 (511)
Q Consensus       449 ~~vL-D~~~-g~g~~~~~l~~~l~~~--g~v~~~  478 (511)
                        || |+.- -.-.+...+++.++|+  |+|+.+
T Consensus       167 --vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~  198 (241)
T PF00891_consen  167 --VLHDWSDEDCVKILRNAAAALKPGKDGRLLII  198 (241)
T ss_dssp             --SGGGS-HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred             --hhhhcchHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence              00 0000 0112356677788987  998877

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=97.09  E-value=0.00056  Score=61.08  Aligned_cols=89  Identities=19%  Similarity=0.314  Sum_probs=54.7

Q ss_pred             CCCHHHHHHHHHHhhcCC--CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHH---HHhhccccc-ccccc
Q psy7829         354 PSSERSIAHILDLCYLNL--HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE---SIANISTNH-IDLIA  427 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~---~~~~~~~~~-v~~i~  427 (511)
                      |++.+.-..+...  +..  -+|.+|||+-||||.+++.+..+..  .+|+.||.+.+.++.   |.++++..+ +.++.
T Consensus        23 PT~drvrealFni--L~~~~~~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~   98 (183)
T PF03602_consen   23 PTTDRVREALFNI--LQPRNLEGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIK   98 (183)
T ss_dssp             SSSHHHHHHHHHH--HHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEE
T ss_pred             CCcHHHHHHHHHH--hcccccCCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhCCCcceeeec
Confidence            4455554444444  332  4799999999999999999888764  799999999766655   444455443 67777


Q ss_pred             cccccccc------ccchhhhhccc
Q psy7829         428 NETIEIIP------HILDLCYLNLH  446 (511)
Q Consensus       428 ~d~~~~l~------~~~d~i~~~l~  446 (511)
                      .|....+.      ..+|.++.+.+
T Consensus        99 ~d~~~~l~~~~~~~~~fDiIflDPP  123 (183)
T PF03602_consen   99 GDAFKFLLKLAKKGEKFDIIFLDPP  123 (183)
T ss_dssp             SSHHHHHHHHHHCTS-EEEEEE--S
T ss_pred             cCHHHHHHhhcccCCCceEEEECCC
Confidence            77555442      34566655544

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK13699 putative methylase; Provisional

Probab=97.09  E-value=0.0029  Score=58.63  Aligned_cols=182  Identities=13%  Similarity=0.053  Sum_probs=0.0

Q ss_pred             CeEEEEccCCCC--CCCCCCccEEEecCCCC---------------------chHHHHHhhcccCcEEEEEEccCCCcce
Q psy7829         190 RVRIVEADAREG--YLPEAPYDVIYYGGCVS---------------------EVPSRVLNQLKKGGRILAPIGPMDDFQK  246 (511)
Q Consensus       190 ~v~~~~~d~~~~--~~~~~~fD~I~~~~~~~---------------------~~~~~~~~~LkpgG~l~~~~~~~~~~~~  246 (511)
                      ..+++++|..+.  ..+++++|+|+.++|+.                     ....++.++|||||.+++..+.......
T Consensus         1 ~~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~~~~   80 (227)
T PRK13699          1 MSRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVDRF   80 (227)
T ss_pred             CCeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccHHHH


Q ss_pred             EEEEEEecCCeEEEEeecceEEEecccccccccccccccCccccccccccccchhhHHHHhhhhhccCCCcccCccccCC
Q psy7829         247 LTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDPVDENLFTLMDKDSDELFSERVWELKQDPLYTTEKWIPQP  326 (511)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~i~~~  326 (511)
                      ...+.+.           +..+....-+.+.-...+-......+..+-.....++                         
T Consensus        81 ~~al~~~-----------GF~l~~~IiW~K~~~~~~~~~~~~~E~i~~~~k~k~~-------------------------  124 (227)
T PRK13699         81 MAAWKNA-----------GFSVVGHLVFTKNYTSKAAYVGYRHECAYILAKGRPA-------------------------  124 (227)
T ss_pred             HHHHHHC-----------CCEEeeEEEEECCCCCCCCCCccceeEEEEEECCCCC-------------------------


Q ss_pred             CCCCCCCceeeeccccccccCCCCCCCCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcC
Q psy7829         327 PGYTTPGEITTRDKYGRLVHGSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH  406 (511)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~  406 (511)
                           ......++.+............+-+.+...+++..   ...+|+.|||--||||..+....+..   -+.+|+|+
T Consensus       125 -----~~~~~~~~v~~~~~~~~~~hp~~kP~~l~~~~i~~---~s~~g~~vlDpf~Gsgtt~~aa~~~~---r~~~g~e~  193 (227)
T PRK13699        125 -----LPQNPLPDVLGWKYSGNRHHPTEKPVTSLQPLIES---FTHPNAIVLDPFAGSGSTCVAALQSG---RRYIGIEL  193 (227)
T ss_pred             -----cccccCCCcccccCCCCCCCCCCCcHHHHHHHHHH---hCCCCCEEEeCCCCCCHHHHHHHHcC---CCEEEEec


Q ss_pred             CHHHHHHHHhhc
Q psy7829         407 MMDIAIESIANI  418 (511)
Q Consensus       407 ~~~~~~~~~~~~  418 (511)
                      +++..+.+.+++
T Consensus       194 ~~~y~~~~~~r~  205 (227)
T PRK13699        194 LEQYHRAGQQRL  205 (227)
T ss_pred             CHHHHHHHHHHH

>KOG1596|consensus

Probab=97.07  E-value=0.0016  Score=58.56  Aligned_cols=101  Identities=20%  Similarity=0.341  Sum_probs=68.4

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCC----HHHHHHHHhhccccccccccccc----cccccccchh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHM----MDIAIESIANISTNHIDLIANET----IEIIPHILDL  440 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~----~~~~~~~~~~~~~~~v~~i~~d~----~~~l~~~~d~  440 (511)
                      +-+++|.+||-+|+++|..--..+..+||.+.|+++|-+    .+++..|.++-.  -|-+++...    ...+-.+.|.
T Consensus       152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtN--iiPIiEDArhP~KYRmlVgmVDv  229 (317)
T KOG1596|consen  152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTN--IIPIIEDARHPAKYRMLVGMVDV  229 (317)
T ss_pred             eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCC--ceeeeccCCCchheeeeeeeEEE
Confidence            577899999999999999999999999999999999976    344444443322  133333221    2223346777


Q ss_pred             hhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         441 CYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       441 i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +|.++.+....-       .+++.....|+++|+++..
T Consensus       230 IFaDvaqpdq~R-------ivaLNA~~FLk~gGhfvis  260 (317)
T KOG1596|consen  230 IFADVAQPDQAR-------IVALNAQYFLKNGGHFVIS  260 (317)
T ss_pred             EeccCCCchhhh-------hhhhhhhhhhccCCeEEEE
Confidence            777776554222       1245556678999998765

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.06  E-value=0.0081  Score=56.17  Aligned_cols=117  Identities=24%  Similarity=0.305  Sum_probs=69.2

Q ss_pred             HHHHHHHHHhhcCCCC-CEEEEEcCCcc--HHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEE
Q psy7829         119 QIADAAENLKLHLVDG-AKVLDLGSGSG--YQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE  195 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~-~~vLDiG~G~G--~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  195 (511)
                      +..+.+..+.  -..| ..+||||||--  ...-.+|+...|+++|+-+|.+|-.+..++..+....     .....++.
T Consensus        55 Fl~RaVr~la--~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-----~g~t~~v~  127 (267)
T PF04672_consen   55 FLRRAVRYLA--EEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-----RGRTAYVQ  127 (267)
T ss_dssp             HHHHHHHHHH--CTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-----TSEEEEEE
T ss_pred             HHHHHHHHHH--HhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-----CccEEEEe
Confidence            4445555554  2224 36999999953  3567788888899999999999999999999887632     12389999


Q ss_pred             ccCCCCC---C---CCCCcc-----EEEecCCCCchH---------HHHHhhcccCcEEEEEEccCC
Q psy7829         196 ADAREGY---L---PEAPYD-----VIYYGGCVSEVP---------SRVLNQLKKGGRILAPIGPMD  242 (511)
Q Consensus       196 ~d~~~~~---~---~~~~fD-----~I~~~~~~~~~~---------~~~~~~LkpgG~l~~~~~~~~  242 (511)
                      +|+.+.-   .   ..+-+|     .++....++++.         ..+.+.|.||.+|+++..+..
T Consensus       128 aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d  194 (267)
T PF04672_consen  128 ADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD  194 (267)
T ss_dssp             --TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred             CCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence            9987421   0   012233     355555555543         678999999999999876543

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=97.03  E-value=0.0037  Score=55.10  Aligned_cols=76  Identities=20%  Similarity=0.230  Sum_probs=56.9

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---c-ccccccccccccccc---ccc--chhhh
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---S-TNHIDLIANETIEII---PHI--LDLCY  442 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~-~~~v~~i~~d~~~~l---~~~--~d~i~  442 (511)
                      -.|.++||+-+|||.+++.+..+..  .+++.||.+....+...+|+   + ..++.++..|+...+   ...  ||.++
T Consensus        42 i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVf  119 (187)
T COG0742          42 IEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVF  119 (187)
T ss_pred             cCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEE
Confidence            5799999999999999999998875  89999999976666555554   4 355777777766443   233  78888


Q ss_pred             hcccCCc
Q psy7829         443 LNLHRGA  449 (511)
Q Consensus       443 ~~l~~~~  449 (511)
                      .+.+...
T Consensus       120 lDPPy~~  126 (187)
T COG0742         120 LDPPYAK  126 (187)
T ss_pred             eCCCCcc
Confidence            7766553

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.02  E-value=0.0015  Score=55.84  Aligned_cols=47  Identities=30%  Similarity=0.543  Sum_probs=38.4

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHh---CCCcEEEEEcCCHHHHHHHHhhc
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLV---GPTGHVTGLEHMMDIAIESIANI  418 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~---~~~~~v~~id~~~~~~~~~~~~~  418 (511)
                      .+..+|+|+|||-||++..++..+   .++.+|++||.+++..+.+.+..
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~   73 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRA   73 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHH
Confidence            578899999999999999999833   35689999999987777655443

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.00  E-value=0.0023  Score=59.91  Aligned_cols=104  Identities=19%  Similarity=0.279  Sum_probs=62.5

Q ss_pred             CCCCEEEEEcCCccHHHH-HHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCC-Cc---------C-C------------
Q psy7829         132 VDGAKVLDLGSGSGYQTC-VFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK-DL---------L-D------------  187 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~-~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-~~---------~-~------------  187 (511)
                      ..|.++||||||+-.... .+++.+   ..++..|.++...+..++-++..+. .|         + +            
T Consensus        55 ~~g~~llDiGsGPtiy~~lsa~~~f---~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l  131 (256)
T PF01234_consen   55 VKGETLLDIGSGPTIYQLLSACEWF---EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL  131 (256)
T ss_dssp             S-EEEEEEES-TT--GGGTTGGGTE---EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHhhhhHHHhh---cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence            357789999999865433 223333   3599999999888877655543210 00         0 0            


Q ss_pred             CCCe-EEEEccCCCCCCCC------CCccEEEecCCCCc----------hHHHHHhhcccCcEEEEEE
Q psy7829         188 SGRV-RIVEADAREGYLPE------APYDVIYYGGCVSE----------VPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       188 ~~~v-~~~~~d~~~~~~~~------~~fD~I~~~~~~~~----------~~~~~~~~LkpgG~l~~~~  238 (511)
                      ...| +++.+|..+..+-.      .+||+|++...++.          ..+++.++|||||.|++..
T Consensus       132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~  199 (256)
T PF01234_consen  132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG  199 (256)
T ss_dssp             HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             HHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            0113 47888988643211      24999998876632          2378999999999999853

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=96.99  E-value=0.0046  Score=56.13  Aligned_cols=111  Identities=20%  Similarity=0.251  Sum_probs=73.6

Q ss_pred             CCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCC---HHHHHHHHhhcccccccccccccccccccc--chhhhhcccCC
Q psy7829         374 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHM---MDIAIESIANISTNHIDLIANETIEIIPHI--LDLCYLNLHRG  448 (511)
Q Consensus       374 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~---~~~~~~~~~~~~~~~v~~i~~d~~~~l~~~--~d~i~~~l~~~  448 (511)
                      +.+++|||+|.|.=++.+|-. .|+.+|+-+|..   ....+.....++.+|++++++.+.+.-+..  +|.+.+.    
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~-~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsR----  142 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIA-FPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSR----  142 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHh-ccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEee----
Confidence            689999999999999999844 488899999976   566677888999999999988554433221  3332211    


Q ss_pred             cEEEEEcCCccHHHHHHHHHhCCCcEEEEh-----HHHHHHHHHHHHhcCC
Q psy7829         449 AKVLEIGSGSGYLATLMAHLVGPTGHVTGL-----EHMMDIAIESIANIST  494 (511)
Q Consensus       449 ~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~-----~~ml~~a~~~~~~~~~  494 (511)
                        .+   +....++......++++|.++..     .+-+..+++.....+.
T Consensus       143 --Av---a~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~  188 (215)
T COG0357         143 --AV---ASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGG  188 (215)
T ss_pred             --hc---cchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcC
Confidence              11   22333444555667888887544     4444555555555543

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=96.97  E-value=0.0065  Score=57.23  Aligned_cols=104  Identities=25%  Similarity=0.280  Sum_probs=69.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhc---cC--------------------------C
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISK---GN--------------------------K  183 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~---~~--------------------------~  183 (511)
                      ...+||--|||.|.++..+|...   -.+.|.|.|-.|+-..+-.+..   .+                          +
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~G---~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP  132 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKLG---YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP  132 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhcc---ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence            35689999999999999999984   3699999999886544432221   00                          0


Q ss_pred             ----C--cCCCCCeEEEEccCCCCCCCC---CCccEEEecCCC---Cch---HHHHHhhcccCcEEEEEEcc
Q psy7829         184 ----D--LLDSGRVRIVEADAREGYLPE---APYDVIYYGGCV---SEV---PSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       184 ----~--~~~~~~v~~~~~d~~~~~~~~---~~fD~I~~~~~~---~~~---~~~~~~~LkpgG~l~~~~~~  240 (511)
                          .  .....++....||+.+.+...   ++||+|+...-+   +.+   .+.+.++||||| +.+-+|+
T Consensus       133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG-~WIN~GP  203 (270)
T PF07942_consen  133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGG-YWINFGP  203 (270)
T ss_pred             CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCC-EEEecCC
Confidence                0  001235777888887655443   789999765322   223   378999999999 4455554

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.95  E-value=0.0024  Score=58.02  Aligned_cols=97  Identities=27%  Similarity=0.261  Sum_probs=68.3

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeE-EEEccCCCCCCC--CCCc
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVR-IVEADAREGYLP--EAPY  208 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~-~~~~d~~~~~~~--~~~f  208 (511)
                      .++..+||+|+.||.++..+.+..  ..+|+++|.....+..--++          .+++. +...|+....+.  .+..
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~kLR~----------d~rV~~~E~tN~r~l~~~~~~~~~  145 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWKLRN----------DPRVIVLERTNVRYLTPEDFTEKP  145 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHhHhc----------CCcEEEEecCChhhCCHHHcccCC
Confidence            478899999999999999999985  46899999987655432221          23443 334454422111  2467


Q ss_pred             cEEEecCCCC---chHHHHHhhcccCcEEEEEEcc
Q psy7829         209 DVIYYGGCVS---EVPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       209 D~I~~~~~~~---~~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      |+|+++.++-   .++..+...++|++.++..+-+
T Consensus       146 d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~LvKP  180 (245)
T COG1189         146 DLIVIDVSFISLKLILPALLLLLKDGGDLVLLVKP  180 (245)
T ss_pred             CeEEEEeehhhHHHHHHHHHHhcCCCceEEEEecc
Confidence            8999887764   3557889999999999886654

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=96.94  E-value=0.0011  Score=64.80  Aligned_cols=44  Identities=18%  Similarity=0.162  Sum_probs=34.1

Q ss_pred             CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc
Q psy7829         373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI  418 (511)
Q Consensus       373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~  418 (511)
                      ++.+|||+|||-|.-..-+...- . .+++|+|++.+.++++.++.
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~-i-~~~vg~Dis~~si~ea~~Ry  105 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAK-I-KHYVGIDISEESIEEARERY  105 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHH
T ss_pred             CCCeEEEecCCCchhHHHHHhcC-C-CEEEEEeCCHHHHHHHHHHH
Confidence            78999999999999777765542 2 89999999999999888877

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>KOG3987|consensus

Probab=96.92  E-value=0.00025  Score=62.22  Aligned_cols=110  Identities=15%  Similarity=0.135  Sum_probs=71.6

Q ss_pred             ccchhHHHHHHHHHHhh-cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCe
Q psy7829         113 VMNAPNQIADAAENLKL-HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRV  191 (511)
Q Consensus       113 ~~~~p~~~~~~~~~l~~-~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v  191 (511)
                      .+-++...++++..=.. .-..+.++||+|+|.|-++..++..+.   +|++.|.|..|....++.            +.
T Consensus        91 FifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~kk------------~y  155 (288)
T KOG3987|consen   91 FIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKKK------------NY  155 (288)
T ss_pred             EEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhhc------------CC
Confidence            34455555554432211 112456899999999999999998874   499999999998776543            22


Q ss_pred             EEEEccCCCCCCCCCCccEEEecCCCC------chHHHHHhhccc-CcEEEEEEc
Q psy7829         192 RIVEADAREGYLPEAPYDVIYYGGCVS------EVPSRVLNQLKK-GGRILAPIG  239 (511)
Q Consensus       192 ~~~~~d~~~~~~~~~~fD~I~~~~~~~------~~~~~~~~~Lkp-gG~l~~~~~  239 (511)
                      .++..  .+....+-+||+|.|-..+.      .+++.++.+|+| .|++++...
T Consensus       156 nVl~~--~ew~~t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLV  208 (288)
T KOG3987|consen  156 NVLTE--IEWLQTDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALV  208 (288)
T ss_pred             ceeee--hhhhhcCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEE
Confidence            22211  11112235699998765542      345889999999 899888643

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=96.89  E-value=0.0096  Score=57.55  Aligned_cols=87  Identities=15%  Similarity=0.212  Sum_probs=64.5

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccccccchhhhhcccCCcE
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIPHILDLCYLNLHRGAK  450 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l~~~~d~i~~~l~~~~~  450 (511)
                      +.+|.++||+||++|..|-.+.+..   .+|+|||..+ +   +..-...++|..++.+.....+.       .-+.++.
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~rG---~~V~AVD~g~-l---~~~L~~~~~V~h~~~d~fr~~p~-------~~~vDwv  274 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRRG---MFVTAVDNGP-M---AQSLMDTGQVEHLRADGFKFRPP-------RKNVDWL  274 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHcC---CEEEEEechh-c---CHhhhCCCCEEEEeccCcccCCC-------CCCCCEE
Confidence            4689999999999999999998774   6999999543 1   12224456788888877766553       1245678


Q ss_pred             EEEEcCCccHHHHHHHHHhCC
Q psy7829         451 VLEIGSGSGYLATLMAHLVGP  471 (511)
Q Consensus       451 vLD~~~g~g~~~~~l~~~l~~  471 (511)
                      +.|+.|-+-.++..+.+-+..
T Consensus       275 VcDmve~P~rva~lm~~Wl~~  295 (357)
T PRK11760        275 VCDMVEKPARVAELMAQWLVN  295 (357)
T ss_pred             EEecccCHHHHHHHHHHHHhc
Confidence            889999988888877776633

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.85  E-value=0.0058  Score=59.34  Aligned_cols=94  Identities=18%  Similarity=0.244  Sum_probs=69.7

Q ss_pred             cCCCCCEEEEEcCC-ccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc-CCCCCCCCCC
Q psy7829         130 HLVDGAKVLDLGSG-SGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD-AREGYLPEAP  207 (511)
Q Consensus       130 ~~~~~~~vLDiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~  207 (511)
                      .++||.+|+=+|+| .|..+..+|+..+  ++|+++|.+++..+.|++.-..           .++... ......-.+.
T Consensus       163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGAd-----------~~i~~~~~~~~~~~~~~  229 (339)
T COG1064         163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGAD-----------HVINSSDSDALEAVKEI  229 (339)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCCc-----------EEEEcCCchhhHHhHhh
Confidence            36799999999987 4568889999874  7899999999999998875222           223322 1110011134


Q ss_pred             ccEEEecCCCCchHHHHHhhcccCcEEEEE
Q psy7829         208 YDVIYYGGCVSEVPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       208 fD~I~~~~~~~~~~~~~~~~LkpgG~l~~~  237 (511)
                      ||+|+...+ ..-.....+.|++||++++.
T Consensus       230 ~d~ii~tv~-~~~~~~~l~~l~~~G~~v~v  258 (339)
T COG1064         230 ADAIIDTVG-PATLEPSLKALRRGGTLVLV  258 (339)
T ss_pred             CcEEEECCC-hhhHHHHHHHHhcCCEEEEE
Confidence            999999988 77788999999999999983

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.84  E-value=0.0054  Score=56.48  Aligned_cols=92  Identities=13%  Similarity=0.047  Sum_probs=63.9

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829         121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE  200 (511)
Q Consensus       121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  200 (511)
                      ..+.+.+...+.+..+|+|||||.=-++....... ++..++|+|++..+++.....+...+      .+.++...|...
T Consensus        93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~------~~~~~~v~Dl~~  165 (251)
T PF07091_consen   93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLG------VPHDARVRDLLS  165 (251)
T ss_dssp             HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-------CEEEEEE-TTT
T ss_pred             HHHHHHHHhcCCCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhC------CCcceeEeeeec
Confidence            34455554456678899999999988888776553 67899999999999999999888743      467888889876


Q ss_pred             CCCCCCCccEEEecCCCCch
Q psy7829         201 GYLPEAPYDVIYYGGCVSEV  220 (511)
Q Consensus       201 ~~~~~~~fD~I~~~~~~~~~  220 (511)
                      ..+ ....|+.+.--.++.+
T Consensus       166 ~~~-~~~~DlaLllK~lp~l  184 (251)
T PF07091_consen  166 DPP-KEPADLALLLKTLPCL  184 (251)
T ss_dssp             SHT-TSEESEEEEET-HHHH
T ss_pred             cCC-CCCcchhhHHHHHHHH
Confidence            543 3679999986555433

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=96.83  E-value=0.012  Score=61.06  Aligned_cols=101  Identities=13%  Similarity=0.024  Sum_probs=71.9

Q ss_pred             CcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHHHhccCCCcCC
Q psy7829         111 AGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGP---TGKVIGVEHIPELIEASLRNISKGNKDLLD  187 (511)
Q Consensus       111 ~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~  187 (511)
                      |...+...+...+++.+.  ..+..+|+|-.||+|.+....++.++.   +..++|.|+++.....|+.|.--+|.   .
T Consensus       166 GEfyTP~~v~~liv~~l~--~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi---~  240 (489)
T COG0286         166 GEFYTPREVSELIVELLD--PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGI---E  240 (489)
T ss_pred             CccCChHHHHHHHHHHcC--CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCC---C
Confidence            333444446666666665  457779999999999988887777643   36799999999999999999877652   1


Q ss_pred             CCCeEEEEccCCCCC-C----CCCCccEEEecCCC
Q psy7829         188 SGRVRIVEADAREGY-L----PEAPYDVIYYGGCV  217 (511)
Q Consensus       188 ~~~v~~~~~d~~~~~-~----~~~~fD~I~~~~~~  217 (511)
                      . ++....+|-...+ .    ..+.||.|++++++
T Consensus       241 ~-~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf  274 (489)
T COG0286         241 G-DANIRHGDTLSNPKHDDKDDKGKFDFVIANPPF  274 (489)
T ss_pred             c-cccccccccccCCcccccCCccceeEEEeCCCC
Confidence            1 4556666654322 2    23679999999887

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=96.82  E-value=0.0046  Score=59.41  Aligned_cols=96  Identities=18%  Similarity=0.268  Sum_probs=66.2

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc--ccccccccccccccc
Q psy7829         358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST--NHIDLIANETIEIIP  435 (511)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~--~~v~~i~~d~~~~l~  435 (511)
                      -....+++.  +.+.++..++|.=+|.|..|..+++.++ +++|+|+|.+++.+..+.+++..  .++.+++++-.....
T Consensus         7 Vll~Evl~~--L~~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~   83 (305)
T TIGR00006         7 VLLDEVVEG--LNIKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFE   83 (305)
T ss_pred             hhHHHHHHh--cCcCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHH
Confidence            345566776  7778999999999999999999999884 49999999999999888777652  357777665333211


Q ss_pred             ccchhhhhcccCCcEEEEEcCCc
Q psy7829         436 HILDLCYLNLHRGAKVLEIGSGS  458 (511)
Q Consensus       436 ~~~d~i~~~l~~~~~vLD~~~g~  458 (511)
                      . +... ..-.-++.++|+|+.+
T Consensus        84 ~-l~~~-~~~~vDgIl~DLGvSS  104 (305)
T TIGR00006        84 H-LDEL-LVTKIDGILVDLGVSS  104 (305)
T ss_pred             H-HHhc-CCCcccEEEEeccCCH
Confidence            1 1100 0012456677777654

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG2198|consensus

Probab=96.81  E-value=0.011  Score=57.12  Aligned_cols=104  Identities=15%  Similarity=0.210  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCC---CcEEEEEcCCHHHHHH---HHhhccccccccccccc
Q psy7829         357 ERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGP---TGHVTGLEHMMDIAIE---SIANISTNHIDLIANET  430 (511)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~---~~~v~~id~~~~~~~~---~~~~~~~~~v~~i~~d~  430 (511)
                      -.+++.++--..+.++++++|||+++.+|.-|+.+.+.+-+   .|.|++-|.+......   ....+...++.+...++
T Consensus       139 rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~  218 (375)
T KOG2198|consen  139 RQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDA  218 (375)
T ss_pred             hhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccc
Confidence            34455555444589999999999999999999877766521   3699999998655554   33444445554444432


Q ss_pred             cccccccc--hhh-hhcccCCcEEEEEcC-CccHH
Q psy7829         431 IEIIPHIL--DLC-YLNLHRGAKVLEIGS-GSGYL  461 (511)
Q Consensus       431 ~~~l~~~~--d~i-~~~l~~~~~vLD~~~-g~g~~  461 (511)
                      .. .+...  +.- ......+...+|+.| |-|.+
T Consensus       219 ~~-~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~  252 (375)
T KOG2198|consen  219 SL-FPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTL  252 (375)
T ss_pred             ee-ccccccccCchhhhhhcceeEEecccCCCccc
Confidence            22 22111  111 122344556778888 34443

>KOG2671|consensus

Probab=96.80  E-value=0.0028  Score=60.25  Aligned_cols=81  Identities=20%  Similarity=0.155  Sum_probs=62.3

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHH-------HHHHHHhccCCCcCCCCCeEEEEccCCCC-C
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIE-------ASLRNISKGNKDLLDSGRVRIVEADAREG-Y  202 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~-------~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~  202 (511)
                      .++|+-|+|--.|||.+....|+..   +.|+|.||+-.++.       ..+.|+++.|.   ...-+.++.+|.... +
T Consensus       206 v~pGdivyDPFVGTGslLvsaa~FG---a~viGtDIDyr~vragrg~~~si~aNFkQYg~---~~~fldvl~~D~sn~~~  279 (421)
T KOG2671|consen  206 VKPGDIVYDPFVGTGSLLVSAAHFG---AYVIGTDIDYRTVRAGRGEDESIKANFKQYGS---SSQFLDVLTADFSNPPL  279 (421)
T ss_pred             cCCCCEEecCccccCceeeehhhhc---ceeeccccchheeecccCCCcchhHhHHHhCC---cchhhheeeecccCcch
Confidence            7899999999999999988877753   46999999987776       35577777652   222367888998753 3


Q ss_pred             CCCCCccEEEecCCC
Q psy7829         203 LPEAPYDVIYYGGCV  217 (511)
Q Consensus       203 ~~~~~fD~I~~~~~~  217 (511)
                      .....||.|+|+++.
T Consensus       280 rsn~~fDaIvcDPPY  294 (421)
T KOG2671|consen  280 RSNLKFDAIVCDPPY  294 (421)
T ss_pred             hhcceeeEEEeCCCc
Confidence            345679999999887

>KOG1499|consensus

Probab=96.79  E-value=0.0019  Score=62.00  Aligned_cols=61  Identities=23%  Similarity=0.394  Sum_probs=52.5

Q ss_pred             ccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh--HHHHHHHHHHHHhcCC-CceEEEechHHHH
Q psy7829         445 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL--EHMMDIAIESIANIST-NHIDLIANETIEI  507 (511)
Q Consensus       445 l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~--~~ml~~a~~~~~~~~~-~~i~~i~~d~~~~  507 (511)
                      +-.+..|||+|||||.+++..++.-  .-+|+++  ..|.+.|++.+..+++ +.|+++++.++++
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi  121 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDI  121 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEE
Confidence            3567899999999999999999873  3589999  9999999999999999 5699999987654

>KOG4589|consensus

Probab=96.72  E-value=0.0045  Score=53.69  Aligned_cols=36  Identities=28%  Similarity=0.502  Sum_probs=33.7

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcC
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH  406 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~  406 (511)
                      ++|+++|||+||.+|..+-.+-+.++|+|.|.|||+
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDl  102 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDL  102 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEee
Confidence            468999999999999999999999999999999995

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=96.68  E-value=0.0074  Score=60.24  Aligned_cols=103  Identities=22%  Similarity=0.274  Sum_probs=76.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC-CCCCCccEE
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY-LPEAPYDVI  211 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~I  211 (511)
                      .+.+|||.=+|||.=++..+.......+|+.-|+|+++++..++|++.++.   ..+++++.+.|+.... .....||+|
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~---~~~~~~v~~~DAn~ll~~~~~~fD~I  125 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL---EDERIEVSNMDANVLLYSRQERFDVI  125 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT----SGCCEEEEES-HHHHHCHSTT-EEEE
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc---cCceEEEehhhHHHHhhhccccCCEE
Confidence            456899999999999999999865556899999999999999999998872   2226899999987533 234789999


Q ss_pred             EecCCC--CchHHHHHhhcccCcEEEEEE
Q psy7829         212 YYGGCV--SEVPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       212 ~~~~~~--~~~~~~~~~~LkpgG~l~~~~  238 (511)
                      =.++--  ..+++.+.+.++.||.|.+..
T Consensus       126 DlDPfGSp~pfldsA~~~v~~gGll~vTa  154 (377)
T PF02005_consen  126 DLDPFGSPAPFLDSALQAVKDGGLLCVTA  154 (377)
T ss_dssp             EE--SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeCCCCCccHhHHHHHHHhhcCCEEEEec
Confidence            876432  235588999999999999853

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>KOG1975|consensus

Probab=96.68  E-value=0.0044  Score=58.53  Aligned_cols=107  Identities=16%  Similarity=0.126  Sum_probs=61.7

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---------cccccccccccccc-----c
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---------TNHIDLIANETIEI-----I  434 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---------~~~v~~i~~d~~~~-----l  434 (511)
                      .-.++++.++|+|||-|.-.+.+-+.. . +.++++||....+++++++..         .-.+.|+.+|-...     +
T Consensus       113 ~y~~~~~~~~~LgCGKGGDLlKw~kAg-I-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~  190 (389)
T KOG1975|consen  113 LYTKRGDDVLDLGCGKGGDLLKWDKAG-I-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLL  190 (389)
T ss_pred             HHhccccccceeccCCcccHhHhhhhc-c-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhc
Confidence            355789999999999999988887654 3 799999998666666555443         11245666652211     1


Q ss_pred             ---cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         435 ---PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       435 ---~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                         +..||.+-.++.-+-..-+- .-.-.....+++.|+|||.++|.
T Consensus       191 e~~dp~fDivScQF~~HYaFete-e~ar~~l~Nva~~LkpGG~FIgT  236 (389)
T KOG1975|consen  191 EFKDPRFDIVSCQFAFHYAFETE-ESARIALRNVAKCLKPGGVFIGT  236 (389)
T ss_pred             cCCCCCcceeeeeeeEeeeeccH-HHHHHHHHHHHhhcCCCcEEEEe
Confidence               11133322221110000000 00111234567889999999999

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=96.68  E-value=0.0019  Score=66.02  Aligned_cols=72  Identities=19%  Similarity=0.319  Sum_probs=43.4

Q ss_pred             CCEEEEEeccccHHHHHHHHHh---CCCcEEEEEcCCHHHHHHH--H-hhcc-cccccccccccccc-ccccchhhhhcc
Q psy7829         374 GAKVLEIGSGSGYLATLMAHLV---GPTGHVTGLEHMMDIAIES--I-ANIS-TNHIDLIANETIEI-IPHILDLCYLNL  445 (511)
Q Consensus       374 ~~~vLdiG~G~G~~~~~la~~~---~~~~~v~~id~~~~~~~~~--~-~~~~-~~~v~~i~~d~~~~-l~~~~d~i~~~l  445 (511)
                      +..|+|||||+|.++...++..   +...+|+|||.++......  + +..+ .+.|+++++|..+. ++...|.+++.+
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl  266 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL  266 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence            5789999999999986665432   2347999999986544332  2 2223 35689999886554 233556555543

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.67  E-value=0.0039  Score=55.84  Aligned_cols=39  Identities=18%  Similarity=0.414  Sum_probs=35.1

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCH
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMM  408 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~  408 (511)
                      -++++.+|+|+|+.+|..+-.+++.+++++.|+++|+.+
T Consensus        42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p   80 (205)
T COG0293          42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP   80 (205)
T ss_pred             eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence            346899999999999999999999998888899999864

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=96.63  E-value=0.0024  Score=56.60  Aligned_cols=49  Identities=29%  Similarity=0.338  Sum_probs=34.9

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST  420 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~  420 (511)
                      ....+.+|||+|||+|..++.+|+.. ...+|+..|.++ .....+.|+..
T Consensus        42 ~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~   90 (173)
T PF10294_consen   42 ELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIEL   90 (173)
T ss_dssp             GGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHT
T ss_pred             hhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHh
Confidence            45578999999999999999999884 238999999987 55555555543

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=96.56  E-value=0.011  Score=52.91  Aligned_cols=37  Identities=24%  Similarity=0.454  Sum_probs=31.4

Q ss_pred             CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHH
Q psy7829         373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMD  409 (511)
Q Consensus       373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~  409 (511)
                      .+.+|||+||++|.++..+.+..++.++|+|+|+.+.
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            3489999999999999999988756799999998755

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.55  E-value=0.018  Score=51.78  Aligned_cols=99  Identities=15%  Similarity=0.222  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHH---HhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC--------
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAH---MVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG--------  201 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~---~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--------  201 (511)
                      +++.|+|+|.-.|+.+..+|.   .+++.++|+|+|++-.....  +..+...    ..++|++++||..+.        
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp----~~~rI~~i~Gds~d~~~~~~v~~  105 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHP----MSPRITFIQGDSIDPEIVDQVRE  105 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG--------TTEEEEES-SSSTHHHHTSGS
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhcc----ccCceEEEECCCCCHHHHHHHHH
Confidence            467899999999998877765   44567899999996433221  1122211    246899999998632        


Q ss_pred             CCCCCCccEEEecCC--CCchH---HHHHhhcccCcEEEEE
Q psy7829         202 YLPEAPYDVIYYGGC--VSEVP---SRVLNQLKKGGRILAP  237 (511)
Q Consensus       202 ~~~~~~fD~I~~~~~--~~~~~---~~~~~~LkpgG~l~~~  237 (511)
                      ........+|+.+..  ..++.   +.....+++|+++++.
T Consensus       106 ~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVe  146 (206)
T PF04989_consen  106 LASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVE  146 (206)
T ss_dssp             S----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEET
T ss_pred             hhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEE
Confidence            111133456665543  23443   5577899999999883

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=96.54  E-value=0.0044  Score=55.69  Aligned_cols=81  Identities=22%  Similarity=0.290  Sum_probs=56.9

Q ss_pred             CEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC---CCCCccEE
Q psy7829         135 AKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL---PEAPYDVI  211 (511)
Q Consensus       135 ~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~I  211 (511)
                      .++|||||=+......-...+    .|+.||+++.                    .-.+.+.|+.+-+.   +.+.||+|
T Consensus        53 lrlLEVGals~~N~~s~~~~f----dvt~IDLns~--------------------~~~I~qqDFm~rplp~~~~e~FdvI  108 (219)
T PF11968_consen   53 LRLLEVGALSTDNACSTSGWF----DVTRIDLNSQ--------------------HPGILQQDFMERPLPKNESEKFDVI  108 (219)
T ss_pred             ceEEeecccCCCCcccccCce----eeEEeecCCC--------------------CCCceeeccccCCCCCCcccceeEE
Confidence            589999998766554433333    4999999762                    12456677765322   35789999


Q ss_pred             EecCCCCchH---------HHHHhhcccCcE-----EEEEEc
Q psy7829         212 YYGGCVSEVP---------SRVLNQLKKGGR-----ILAPIG  239 (511)
Q Consensus       212 ~~~~~~~~~~---------~~~~~~LkpgG~-----l~~~~~  239 (511)
                      .++.++..++         .++.+.|+|+|.     |++...
T Consensus       109 s~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP  150 (219)
T PF11968_consen  109 SLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLP  150 (219)
T ss_pred             EEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeC
Confidence            9988876554         788999999999     666443

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=96.40  E-value=0.0025  Score=60.82  Aligned_cols=116  Identities=16%  Similarity=0.177  Sum_probs=69.6

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccc-----ccccccccccccc-----ccchhh
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH-----IDLIANETIEIIP-----HILDLC  441 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~-----v~~i~~d~~~~l~-----~~~d~i  441 (511)
                      ..|.+|||+-|-||.+++.++.. |. .+|++||.+...++.+++|+..++     ++++..|..+.+.     ..+|.+
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~g-GA-~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~I  199 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAAG-GA-KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLI  199 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHHT-TE-SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEE
T ss_pred             cCCCceEEecCCCCHHHHHHHHC-CC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEE
Confidence            46899999999999999987753 32 589999999888888888776554     4567777665543     234544


Q ss_pred             hhcccC---CcEEEEEcCCccHHHHHHHHHhCCCcEEEEh--------HHHHHHHHHHHHh
Q psy7829         442 YLNLHR---GAKVLEIGSGSGYLATLMAHLVGPTGHVTGL--------EHMMDIAIESIAN  491 (511)
Q Consensus       442 ~~~l~~---~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~--------~~ml~~a~~~~~~  491 (511)
                      ..+++.   +..-  +.-+-..+...+.+.++|+|.++..        +.+++..++...+
T Consensus       200 IlDPPsF~k~~~~--~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a~~  258 (286)
T PF10672_consen  200 ILDPPSFAKSKFD--LERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAARE  258 (286)
T ss_dssp             EE--SSEESSTCE--HHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHHHH
T ss_pred             EECCCCCCCCHHH--HHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhCcc
Confidence            444321   1111  1111122344455677999988765        4455555555543

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PHA01634 hypothetical protein

Probab=96.35  E-value=0.0068  Score=49.05  Aligned_cols=49  Identities=12%  Similarity=0.005  Sum_probs=43.0

Q ss_pred             CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccc
Q psy7829         373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHI  423 (511)
Q Consensus       373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v  423 (511)
                      .+.+|+|||.+.|..+++++....  .+|+++|.++...+...+++...+|
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GA--K~Vva~E~~~kl~k~~een~k~nnI   76 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGA--SFVVQYEKEEKLRKKWEEVCAYFNI   76 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCc--cEEEEeccCHHHHHHHHHHhhhhee
Confidence            589999999999999999997764  7999999999999988888776654

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=96.32  E-value=0.0044  Score=61.76  Aligned_cols=61  Identities=16%  Similarity=0.144  Sum_probs=47.5

Q ss_pred             CEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc---cccccccccccccc
Q psy7829         375 AKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN---HIDLIANETIEIIP  435 (511)
Q Consensus       375 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~---~v~~i~~d~~~~l~  435 (511)
                      -+|||+.||+|..++.+++..+.-.+|+++|++++.++...+|+..+   +++++++|+...+.
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~  109 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLR  109 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHH
Confidence            58999999999999999987521268999999988888777777644   46677777655543

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=96.26  E-value=0.0072  Score=59.27  Aligned_cols=122  Identities=19%  Similarity=0.227  Sum_probs=68.9

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHh------CCCcEEEEEcCCHHHHHHHHhhcc-----ccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLV------GPTGHVTGLEHMMDIAIESIANIS-----TNHID  424 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~------~~~~~v~~id~~~~~~~~~~~~~~-----~~~v~  424 (511)
                      ||..+.+++.. .+...++.+|+|-+||+|.+...+.+.+      .+..+++|+|+++..+..+.-|+-     ..+..
T Consensus        30 TP~~i~~l~~~-~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~  108 (311)
T PF02384_consen   30 TPREIVDLMVK-LLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNIN  108 (311)
T ss_dssp             --HHHHHHHHH-HHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCE
T ss_pred             hHHHHHHHHHh-hhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccc
Confidence            55555554443 2577788899999999999998887643      245899999999888877665543     22233


Q ss_pred             cccccccccc----cccchhhhhcccCCcE-EE------EE-------cCCcc--HHHHHHHHHhCCCcEEEEh
Q psy7829         425 LIANETIEII----PHILDLCYLNLHRGAK-VL------EI-------GSGSG--YLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       425 ~i~~d~~~~l----~~~~d~i~~~l~~~~~-vL------D~-------~~g~g--~~~~~l~~~l~~~g~v~~~  478 (511)
                      +..+|.+...    ...+|.++.+++-+.. .-      +.       .-+..  .+.....+.|+++|++..+
T Consensus       109 i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I  182 (311)
T PF02384_consen  109 IIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAII  182 (311)
T ss_dssp             EEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEE
Confidence            4455543322    2346777776655544 10      00       01111  2344556778899987666

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG1500|consensus

Probab=96.24  E-value=0.01  Score=56.26  Aligned_cols=59  Identities=25%  Similarity=0.377  Sum_probs=50.8

Q ss_pred             CCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh--HHHHHHHHHHHHhcCC-CceEEEechHHHH
Q psy7829         447 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL--EHMMDIAIESIANIST-NHIDLIANETIEI  507 (511)
Q Consensus       447 ~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~--~~ml~~a~~~~~~~~~-~~i~~i~~d~~~~  507 (511)
                      .+..++|+|||.|.++...+..-  ..+|+++  ++|.+.|++.++.+.+ ++|++|.|-.+++
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdi  238 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDI  238 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhC--cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccc
Confidence            46689999999999998887763  3589999  9999999999999988 8999999887764

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.20  E-value=0.048  Score=48.23  Aligned_cols=59  Identities=27%  Similarity=0.396  Sum_probs=45.6

Q ss_pred             CCCHHHHHHHHHHhh-cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHH
Q psy7829         354 PSSERSIAHILDLCY-LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE  413 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~-~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~  413 (511)
                      |--.+..+.++.=+. +.+++|++||-+|+.+|...-..+..++ .|.++++|.++...+.
T Consensus        56 p~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~re  115 (231)
T COG1889          56 PRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRE  115 (231)
T ss_pred             cchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHH
Confidence            334455555554333 6889999999999999999999999996 7999999988555443

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=96.16  E-value=0.037  Score=52.84  Aligned_cols=99  Identities=14%  Similarity=0.201  Sum_probs=73.1

Q ss_pred             CCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-------ccccccccccccccccc---cchhhhh
Q psy7829         374 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-------TNHIDLIANETIEIIPH---ILDLCYL  443 (511)
Q Consensus       374 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-------~~~v~~i~~d~~~~l~~---~~d~i~~  443 (511)
                      ..+||-||-|.|..+..+.+.. +-.+++.+|++++.++.+++-+.       .++++++.+|+.+.+..   .+|.|..
T Consensus        77 pk~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~  155 (282)
T COG0421          77 PKRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV  155 (282)
T ss_pred             CCeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence            3699999999999999999876 56899999999999998887665       25578888887777652   4666555


Q ss_pred             cccCCcEEEEEcCCc----cHHHHHHHHHhCCCcEEEEh
Q psy7829         444 NLHRGAKVLEIGSGS----GYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       444 ~l~~~~~vLD~~~g~----g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +...+     .|.+.    ..+-....+.|+++|-++.-
T Consensus       156 D~tdp-----~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         156 DSTDP-----VGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             cCCCC-----CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            54433     13333    34455566778998888766

>KOG1562|consensus

Probab=96.16  E-value=0.011  Score=55.14  Aligned_cols=104  Identities=21%  Similarity=0.190  Sum_probs=79.8

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC--CCCCc
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL--PEAPY  208 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~f  208 (511)
                      ....++||-||-|-|......+++ ..-..+.-+|++...++..++.+.....+ ...++|.++.||......  ..++|
T Consensus       119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~g-y~~~~v~l~iGDG~~fl~~~~~~~~  196 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACG-YEGKKVKLLIGDGFLFLEDLKENPF  196 (337)
T ss_pred             CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcc-cCCCceEEEeccHHHHHHHhccCCc
Confidence            346788999999999998888777 45567899999999999999988764322 346789999999864221  35899


Q ss_pred             cEEEecCCCCch----------HHHHHhhcccCcEEEE
Q psy7829         209 DVIYYGGCVSEV----------PSRVLNQLKKGGRILA  236 (511)
Q Consensus       209 D~I~~~~~~~~~----------~~~~~~~LkpgG~l~~  236 (511)
                      |+|+.+..-+..          ...+.+.||++|+++.
T Consensus       197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~  234 (337)
T KOG1562|consen  197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCT  234 (337)
T ss_pred             eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence            999976544322          2578899999999987

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.15  E-value=0.015  Score=53.37  Aligned_cols=86  Identities=30%  Similarity=0.524  Sum_probs=49.4

Q ss_pred             CCCC--CEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCC-cC---CCCCeEEEEccCCCCCC-
Q psy7829         131 LVDG--AKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKD-LL---DSGRVRIVEADAREGYL-  203 (511)
Q Consensus       131 ~~~~--~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~---~~~~v~~~~~d~~~~~~-  203 (511)
                      ++++  .+|||.-+|-|.-+..+|.. |  ++|+++|.||-+....+.-++++..+ ..   ...+++++.+|..+... 
T Consensus        71 lk~~~~~~VLDaTaGLG~Da~vlA~~-G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~  147 (234)
T PF04445_consen   71 LKPGMRPSVLDATAGLGRDAFVLASL-G--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQ  147 (234)
T ss_dssp             -BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCC
T ss_pred             CCCCCCCEEEECCCcchHHHHHHHcc-C--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhh
Confidence            4555  48999999999999999965 3  37999999998776665443322100 00   12479999999886443 


Q ss_pred             CCCCccEEEecCCCCc
Q psy7829         204 PEAPYDVIYYGGCVSE  219 (511)
Q Consensus       204 ~~~~fD~I~~~~~~~~  219 (511)
                      +..+||+|+.++++++
T Consensus       148 ~~~s~DVVY~DPMFp~  163 (234)
T PF04445_consen  148 PDNSFDVVYFDPMFPE  163 (234)
T ss_dssp             HSS--SEEEE--S---
T ss_pred             cCCCCCEEEECCCCCC
Confidence            3578999999999864

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.15  E-value=0.052  Score=54.15  Aligned_cols=97  Identities=23%  Similarity=0.284  Sum_probs=68.6

Q ss_pred             CCCCEEEEEcCCc-cHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc-cCCC---CCCCCC
Q psy7829         132 VDGAKVLDLGSGS-GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA-DARE---GYLPEA  206 (511)
Q Consensus       132 ~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-d~~~---~~~~~~  206 (511)
                      .++.+|+=+|||+ |.++..+++..+ ..+|+.+|.++..++.|++....        +.+..... +...   ......
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~--------~~~~~~~~~~~~~~~~~~t~g~  237 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGA--------DVVVNPSEDDAGAEILELTGGR  237 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCC--------eEeecCccccHHHHHHHHhCCC
Confidence            4555999999998 888888888874 57899999999999999885322        11111111 1100   111123


Q ss_pred             CccEEEecCCCCchHHHHHhhcccCcEEEEE
Q psy7829         207 PYDVIYYGGCVSEVPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       207 ~fD~I~~~~~~~~~~~~~~~~LkpgG~l~~~  237 (511)
                      .+|+++-..........+.+.++|||.+++.
T Consensus       238 g~D~vie~~G~~~~~~~ai~~~r~gG~v~~v  268 (350)
T COG1063         238 GADVVIEAVGSPPALDQALEALRPGGTVVVV  268 (350)
T ss_pred             CCCEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence            6999998777666678999999999999884

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.09  E-value=0.009  Score=53.19  Aligned_cols=104  Identities=15%  Similarity=0.093  Sum_probs=59.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHhcc-------------------CC---------
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGP-TGKVIGVEHIPELIEASLRNISKG-------------------NK---------  183 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~-------------------~~---------  183 (511)
                      .+-.++|-|||+|++...+.-..+. -..|++.|+++++++.|++|+.-.                   +.         
T Consensus        51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s  130 (246)
T PF11599_consen   51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES  130 (246)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            3458999999999988877665432 246999999999999999887421                   00         


Q ss_pred             ------C--cC-CCCCeEEEEccCCCCC-----CCCCCccEEEecCCCC---------------chHHHHHhhcccCcEE
Q psy7829         184 ------D--LL-DSGRVRIVEADAREGY-----LPEAPYDVIYYGGCVS---------------EVPSRVLNQLKKGGRI  234 (511)
Q Consensus       184 ------~--~~-~~~~v~~~~~d~~~~~-----~~~~~fD~I~~~~~~~---------------~~~~~~~~~LkpgG~l  234 (511)
                            .  -. ......+.+.|++++-     ......|+|+.+.++-               .++..+...|-+++++
T Consensus       131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV  210 (246)
T PF11599_consen  131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVV  210 (246)
T ss_dssp             HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EE
T ss_pred             HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEE
Confidence                  0  00 1234667888887521     1223469999987762               2347888999444444


Q ss_pred             EE
Q psy7829         235 LA  236 (511)
Q Consensus       235 ~~  236 (511)
                      ++
T Consensus       211 ~v  212 (246)
T PF11599_consen  211 AV  212 (246)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG0024|consensus

Probab=96.03  E-value=0.044  Score=52.20  Aligned_cols=97  Identities=20%  Similarity=0.287  Sum_probs=72.1

Q ss_pred             CCCCCEEEEEcCCc-cHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC-----C---CC
Q psy7829         131 LVDGAKVLDLGSGS-GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA-----R---EG  201 (511)
Q Consensus       131 ~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-----~---~~  201 (511)
                      .+.|.+||-+|+|+ |..+...|+.+| ..+|+.+|+++..++.|++ +.        .+.+.......     .   +.
T Consensus       167 vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~-~G--------a~~~~~~~~~~~~~~~~~~v~~  236 (354)
T KOG0024|consen  167 VKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK-FG--------ATVTDPSSHKSSPQELAELVEK  236 (354)
T ss_pred             cccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH-hC--------CeEEeeccccccHHHHHHHHHh
Confidence            67899999999997 888889999985 5789999999999999998 32        22222222211     0   11


Q ss_pred             CCCCCCccEEEecCCCCchHHHHHhhcccCcEEEEE
Q psy7829         202 YLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       202 ~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~l~~~  237 (511)
                      ......+|+.+.....+...+.....+++||.+++.
T Consensus       237 ~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlv  272 (354)
T KOG0024|consen  237 ALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLV  272 (354)
T ss_pred             hccccCCCeEEEccCchHHHHHHHHHhccCCEEEEe
Confidence            112245899998888887788899999999997664

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.00  E-value=0.021  Score=51.30  Aligned_cols=124  Identities=16%  Similarity=0.193  Sum_probs=58.2

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHH---hCCCcEEEEEcCCHHHH-HHHHhhcc-ccccccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHL---VGPTGHVTGLEHMMDIA-IESIANIS-TNHIDLIANET  430 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~---~~~~~~v~~id~~~~~~-~~~~~~~~-~~~v~~i~~d~  430 (511)
                      .|.+...+-++  +---+.+.|+|+|+-.|..++++|..   .++.++|++||++.... +.+.+... .++|++++||.
T Consensus        17 ~P~Dm~~~qel--i~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds   94 (206)
T PF04989_consen   17 YPQDMVAYQEL--IWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDS   94 (206)
T ss_dssp             -HHHHHHHHHH--HHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-S
T ss_pred             CHHHHHHHHHH--HHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCC
Confidence            34555444443  22235788999999999999998864   35679999999975443 33333322 36799999875


Q ss_pred             cccccccchhhhhcccCC---cEEEEEc---CCccHHHHHHHHHhCCCcEEEEhHHHHH
Q psy7829         431 IEIIPHILDLCYLNLHRG---AKVLEIG---SGSGYLATLMAHLVGPTGHVTGLEHMMD  483 (511)
Q Consensus       431 ~~~l~~~~d~i~~~l~~~---~~vLD~~---~g~g~~~~~l~~~l~~~g~v~~~~~ml~  483 (511)
                      .+.  ..++.+..-.+.+   -.++|--   +-.-.....++..+.+|+.++.-+..++
T Consensus        95 ~d~--~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~  151 (206)
T PF04989_consen   95 IDP--EIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIE  151 (206)
T ss_dssp             SST--HHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHH
T ss_pred             CCH--HHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEecccc
Confidence            431  1122221111222   2334333   2222334456677888766666533333

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.00  E-value=0.047  Score=49.20  Aligned_cols=103  Identities=15%  Similarity=0.156  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHhh----cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEE
Q psy7829         118 NQIADAAENLKL----HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI  193 (511)
Q Consensus       118 ~~~~~~~~~l~~----~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~  193 (511)
                      ....++.++|..    ...++.++||||.|.-.+=-.+..+. -..+.+|.|+++.+++.|+.++..+..   ....|++
T Consensus        59 dYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~e-YgwrfvGseid~~sl~sA~~ii~~N~~---l~~~I~l  134 (292)
T COG3129          59 DYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHE-YGWRFVGSEIDSQSLSSAKAIISANPG---LERAIRL  134 (292)
T ss_pred             HHHHHHHHHHHhcCCCCCcCceEEEeeccCccccccccccee-ecceeecCccCHHHHHHHHHHHHcCcc---hhhheeE
Confidence            355556666653    12356689999988654322222211 246799999999999999999887620   2223555


Q ss_pred             EEccCC----CCCC-CCCCccEEEecCCCCchHHHH
Q psy7829         194 VEADAR----EGYL-PEAPYDVIYYGGCVSEVPSRV  224 (511)
Q Consensus       194 ~~~d~~----~~~~-~~~~fD~I~~~~~~~~~~~~~  224 (511)
                      ....-.    .+.. ..+.||.++|+++++.-.+.+
T Consensus       135 r~qk~~~~if~giig~nE~yd~tlCNPPFh~s~~da  170 (292)
T COG3129         135 RRQKDSDAIFNGIIGKNERYDATLCNPPFHDSAADA  170 (292)
T ss_pred             EeccCccccccccccccceeeeEecCCCcchhHHHH
Confidence            443211    1111 246799999999998776544

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=95.99  E-value=0.039  Score=54.23  Aligned_cols=99  Identities=18%  Similarity=0.155  Sum_probs=70.7

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhC---C----------------------------Cc---
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVG---P----------------------------TG---  399 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~---~----------------------------~~---  399 (511)
                      |.-+-.++.++.+  ..-.++..++|-=||||.+.+.+|....   |                            ..   
T Consensus       174 pLketLAaAil~l--agw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~  251 (381)
T COG0116         174 PLKETLAAAILLL--AGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRG  251 (381)
T ss_pred             CchHHHHHHHHHH--cCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhc
Confidence            4445555556665  6777888999999999999999997752   1                            11   


Q ss_pred             ----EEEEEcCCHHHHHHHHhhccc----cccccccccccccccc--cchhhhhcccCCcEEEEE
Q psy7829         400 ----HVTGLEHMMDIAIESIANIST----NHIDLIANETIEIIPH--ILDLCYLNLHRGAKVLEI  454 (511)
Q Consensus       400 ----~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~~l~~--~~d~i~~~l~~~~~vLD~  454 (511)
                          .++|+|++..+++.|+.|...    .-|+|.+.|....-+.  ..+.+..|++-|.++-+-
T Consensus       252 ~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~  316 (381)
T COG0116         252 KELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSE  316 (381)
T ss_pred             CccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCCh
Confidence                478999998888877666552    3367888876554444  677888888888776533

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=95.92  E-value=0.033  Score=48.81  Aligned_cols=38  Identities=32%  Similarity=0.619  Sum_probs=35.9

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcC
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH  406 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~  406 (511)
                      ..+++|.+|+|+=.|.||+|..++..++|+|.|+++-.
T Consensus        44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p   81 (238)
T COG4798          44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVP   81 (238)
T ss_pred             eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecc
Confidence            78999999999999999999999999999999999954

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=95.92  E-value=0.012  Score=56.48  Aligned_cols=98  Identities=14%  Similarity=0.208  Sum_probs=59.8

Q ss_pred             HHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc--cccccccccccccccccc
Q psy7829         360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS--TNHIDLIANETIEIIPHI  437 (511)
Q Consensus       360 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~--~~~v~~i~~d~~~~l~~~  437 (511)
                      ...+++.  +...++..++|.=-|.|..|..+.+.+ ++++|+|+|.|++++..+.+++.  .+++.+++++-.+ +...
T Consensus         9 l~Evl~~--L~~~~~g~~vD~T~G~GGHS~aiL~~~-~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~-l~~~   84 (310)
T PF01795_consen    9 LKEVLEA--LNPKPGGIYVDCTFGGGGHSKAILEKL-PNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN-LDEY   84 (310)
T ss_dssp             HHHHHHH--HT--TT-EEEETT-TTSHHHHHHHHT--TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG-HHHH
T ss_pred             HHHHHHh--hCcCCCceEEeecCCcHHHHHHHHHhC-CCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH-HHHH
Confidence            4455666  677899999999999999999999888 44999999999999999988887  4567777664322 2222


Q ss_pred             chhhhhcccCCcEEEEEcCCccHH
Q psy7829         438 LDLCYLNLHRGAKVLEIGSGSGYL  461 (511)
Q Consensus       438 ~d~i~~~l~~~~~vLD~~~g~g~~  461 (511)
                      ..........++.++|+|+.+-.+
T Consensus        85 l~~~~~~~~~dgiL~DLGvSS~Ql  108 (310)
T PF01795_consen   85 LKELNGINKVDGILFDLGVSSMQL  108 (310)
T ss_dssp             HHHTTTTS-EEEEEEE-S--HHHH
T ss_pred             HHHccCCCccCEEEEccccCHHHh
Confidence            111101124567888998754333

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>KOG4058|consensus

Probab=95.86  E-value=0.036  Score=46.17  Aligned_cols=108  Identities=22%  Similarity=0.255  Sum_probs=73.8

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      ..+.++.++.  .++..+.+|+|+|.|.+....++..  -...+|+|+++-.+.+++-+.-+.|    ...+..|..-|+
T Consensus        60 Qv~nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g----~~k~trf~Rkdl  131 (199)
T KOG4058|consen   60 QVENVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAG----CAKSTRFRRKDL  131 (199)
T ss_pred             HHHHHHHHcc--CCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHh----cccchhhhhhhh
Confidence            3445566665  4566789999999999998888875  2347899999999999988776665    455788888887


Q ss_pred             CCCCCCCCCccEEEecCC---CCchHHHHHhhcccCcEEEE
Q psy7829         199 REGYLPEAPYDVIYYGGC---VSEVPSRVLNQLKKGGRILA  236 (511)
Q Consensus       199 ~~~~~~~~~fD~I~~~~~---~~~~~~~~~~~LkpgG~l~~  236 (511)
                      .....  ..|.-+++..+   ++.+-.++..-+..+-.++.
T Consensus       132 wK~dl--~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vva  170 (199)
T KOG4058|consen  132 WKVDL--RDYRNVVIFGAESVMPDLEDKLRTELPANTRVVA  170 (199)
T ss_pred             hhccc--cccceEEEeehHHHHhhhHHHHHhhCcCCCeEEE
Confidence            65322  33444433332   23333566666777777765

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=95.84  E-value=0.084  Score=47.46  Aligned_cols=50  Identities=26%  Similarity=0.329  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHhhcCCCCCC-EEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHH
Q psy7829         357 ERSIAHILDLCYLNLHRGA-KVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDI  410 (511)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~  410 (511)
                      +..+..++..   -+.... +|||||||||..+..+|+.+ |.-.....|.+...
T Consensus        11 k~pIl~vL~~---~l~~~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~   61 (204)
T PF06080_consen   11 KDPILEVLKQ---YLPDSGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNL   61 (204)
T ss_pred             HhHHHHHHHH---HhCccCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHH
Confidence            3445555554   234444 69999999999999999999 77888888987554

The function of this family is unknown.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=95.80  E-value=0.0022  Score=51.74  Aligned_cols=58  Identities=24%  Similarity=0.460  Sum_probs=15.9

Q ss_pred             EEEeccccHHHHHHHHHhCCCc--EEEEEcCCHH--HHHHHHhhcc-cccccccccccccccc
Q psy7829         378 LEIGSGSGYLATLMAHLVGPTG--HVTGLEHMMD--IAIESIANIS-TNHIDLIANETIEIIP  435 (511)
Q Consensus       378 LdiG~G~G~~~~~la~~~~~~~--~v~~id~~~~--~~~~~~~~~~-~~~v~~i~~d~~~~l~  435 (511)
                      ||+||..|+.++.+++.+.+++  +++++|..+.  ..++..++.+ ..++++++++..+.++
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~   63 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLP   63 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-THHHHH
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHH
Confidence            6999999999999998875554  7999999874  3333333333 3458888887765544

>KOG1253|consensus

Probab=95.70  E-value=0.013  Score=58.66  Aligned_cols=104  Identities=16%  Similarity=0.166  Sum_probs=83.9

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC----CCCCC
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG----YLPEA  206 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~----~~~~~  206 (511)
                      ..++.+|||.=|++|.-++..|+..+.-.+|++.|.++..++..++|++.++    ..+.++..+.|+...    .....
T Consensus       107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~----v~~ive~~~~DA~~lM~~~~~~~~  182 (525)
T KOG1253|consen  107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG----VEDIVEPHHSDANVLMYEHPMVAK  182 (525)
T ss_pred             ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC----chhhcccccchHHHHHHhcccccc
Confidence            4567899999999999999999998666789999999999999999998875    344577788887521    12236


Q ss_pred             CccEEEecC--CCCchHHHHHhhcccCcEEEEEE
Q psy7829         207 PYDVIYYGG--CVSEVPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       207 ~fD~I~~~~--~~~~~~~~~~~~LkpgG~l~~~~  238 (511)
                      .||+|-.++  ....+++.+.+.++.||.|++..
T Consensus       183 ~FDvIDLDPyGs~s~FLDsAvqav~~gGLL~vT~  216 (525)
T KOG1253|consen  183 FFDVIDLDPYGSPSPFLDSAVQAVRDGGLLCVTC  216 (525)
T ss_pred             ccceEecCCCCCccHHHHHHHHHhhcCCEEEEEe
Confidence            799998874  33557799999999999999864

>PRK10742 putative methyltransferase; Provisional

Probab=95.64  E-value=0.018  Score=53.27  Aligned_cols=77  Identities=18%  Similarity=0.191  Sum_probs=55.5

Q ss_pred             cCCCCCC--EEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHH---HHhhc------cc---cccccccccccccc
Q psy7829         369 LNLHRGA--KVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE---SIANI------ST---NHIDLIANETIEII  434 (511)
Q Consensus       369 ~~~~~~~--~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~---~~~~~------~~---~~v~~i~~d~~~~l  434 (511)
                      ..+++|.  +|||+=+|+|..++.+|...   +.|+++|.++..+..   +.++.      +.   .+++++++|..+.+
T Consensus        82 vglk~g~~p~VLD~TAGlG~Da~~las~G---~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L  158 (250)
T PRK10742         82 VGIKGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL  158 (250)
T ss_pred             hCCCCCCCCEEEECCCCccHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHH
Confidence            5667877  99999999999999999875   779999999655553   33332      11   45778888876665


Q ss_pred             c---ccchhhhhcccCC
Q psy7829         435 P---HILDLCYLNLHRG  448 (511)
Q Consensus       435 ~---~~~d~i~~~l~~~  448 (511)
                      .   ..+|.++.+....
T Consensus       159 ~~~~~~fDVVYlDPMfp  175 (250)
T PRK10742        159 TDITPRPQVVYLDPMFP  175 (250)
T ss_pred             hhCCCCCcEEEECCCCC
Confidence            4   3477777665433

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.59  E-value=0.053  Score=52.63  Aligned_cols=99  Identities=20%  Similarity=0.251  Sum_probs=76.2

Q ss_pred             CCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCccEEE
Q psy7829         134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYDVIY  212 (511)
Q Consensus       134 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I~  212 (511)
                      ..+|+|.=+|+|.=++.++...+ ..+|+.-|+||.+++.+++|+..+.     ..+...+..|+..... ....||+|=
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~-----~~~~~v~n~DAN~lm~~~~~~fd~ID  126 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNS-----GEDAEVINKDANALLHELHRAFDVID  126 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcC-----cccceeecchHHHHHHhcCCCccEEe
Confidence            67899999999999999999874 3489999999999999999999872     3345666677754222 236799997


Q ss_pred             ecCCC--CchHHHHHhhcccCcEEEEEE
Q psy7829         213 YGGCV--SEVPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       213 ~~~~~--~~~~~~~~~~LkpgG~l~~~~  238 (511)
                      +++--  -.+.+.+.+.++.||.+.+..
T Consensus       127 iDPFGSPaPFlDaA~~s~~~~G~l~vTA  154 (380)
T COG1867         127 IDPFGSPAPFLDAALRSVRRGGLLCVTA  154 (380)
T ss_pred             cCCCCCCchHHHHHHHHhhcCCEEEEEe
Confidence            65322  234578888999999998853

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=95.55  E-value=0.021  Score=53.66  Aligned_cols=118  Identities=15%  Similarity=0.214  Sum_probs=76.8

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-------ccccccccccccccccc----c
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-------TNHIDLIANETIEIIPH----I  437 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-------~~~v~~i~~d~~~~l~~----~  437 (511)
                      +..+...+||=||-|.|..+..+.+.- +-.+|+.+|++++.++.+++-+.       .++++++.+|+...+..    .
T Consensus        72 ~~~~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~  150 (246)
T PF01564_consen   72 LLHPNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEK  150 (246)
T ss_dssp             HHSSST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-
T ss_pred             hcCCCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCc
Confidence            344578999999999999999887654 34799999999998888776544       35688888887766543    4


Q ss_pred             chhhhhcccCCcEEEEEcCCc----cHHHHHHHHHhCCCcEEEEh-------HHHHHHHHHHHHhc
Q psy7829         438 LDLCYLNLHRGAKVLEIGSGS----GYLATLMAHLVGPTGHVTGL-------EHMMDIAIESIANI  492 (511)
Q Consensus       438 ~d~i~~~l~~~~~vLD~~~g~----g~~~~~l~~~l~~~g~v~~~-------~~ml~~a~~~~~~~  492 (511)
                      +|.+..++....     +.+.    -.+-..+.+.|+|+|-++.-       ...+....+.++..
T Consensus       151 yDvIi~D~~dp~-----~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~  211 (246)
T PF01564_consen  151 YDVIIVDLTDPD-----GPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSV  211 (246)
T ss_dssp             EEEEEEESSSTT-----SCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTT
T ss_pred             ccEEEEeCCCCC-----CCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHh
Confidence            555544443211     1222    24456677888998887653       45555555555543

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	511
1i1n_A	226	Human Protein L-Isoaspartate O-Methyltransferase Wi		1e-44
1i1n_A	226	Human Protein L-Isoaspartate O-Methyltransferase Wi		5e-09
1i1n_A	226	Human Protein L-Isoaspartate O-Methyltransferase Wi		1e-08
1r18_A	227	Drosophila Protein Isoaspartyl Methyltransferase Wi		3e-38
2yxe_A	215	Crystal Structure Of L-Isoaspartyl Protein Carboxyl		5e-21
1jg4_A	235	Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-		9e-17
2pbf_A	227	Crystal Structure Of A Putative Protein-L-Isoaspart		1e-15
3lbf_A	210	Crystal Structure Of Protein L-Isoaspartyl Methyltr		1e-14
1dl5_A	317	Protein-L-Isoaspartate O-Methyltransferase Length =		2e-12
1dl5_A	317	Protein-L-Isoaspartate O-Methyltransferase Length =		9e-04
1vbf_A	231	Crystal Structure Of Protein L-Isoaspartate O-Methy		1e-09
3dh0_A	219	Crystal Structure Of A Sam Dependent Methyltransfer		2e-04

>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S- Adenosyl Homocysteine Length = 226

Iteration: 1
 Score =  177 bits (449), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/220 (41%), Positives = 133/220 (60%)
Query: 58  FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAP 117
           +K+ G   ++L+++LR  G I+T++V +     DR ++A   PY D   S+G+   ++AP
Sbjct: 2   WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 61
Query: 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
           +  A A E L   L +GAK LD+GSGSG  T  FA MVG TGKVIG++HI EL++ S+ N
Sbjct: 62  HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNN 121
Query: 178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
           + K +  LL SGRV++V  D R GY  EAPYD I+ G     VP  +++QLK GGR++ P
Sbjct: 122 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 181
Query: 238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQ 277
           +GP    Q L Q D+  D +++   L  V Y  +  K  Q
Sbjct: 182 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQ 221

>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S- Adenosyl Homocysteine Length = 226

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 48/74 (64%)
Query: 361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST 420
           A+ L+L +  LH GAK L++GSGSG L    A +VG TG V G++H+ ++  +S+ N+  
Sbjct: 65  AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK 124
Query: 421 NHIDLIANETIEII 434
           +   L+++  ++++
Sbjct: 125 DDPTLLSSGRVQLV 138

>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S- Adenosyl Homocysteine Length = 226

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Query: 435 PHI----LDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA 490
           PH+    L+L +  LH GAK L++GSGSG L    A +VG TG V G++H+ ++  +S+ 
Sbjct: 61  PHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVN 120
Query: 491 NISTNHIDLIANETIEII 508
           N+  +   L+++  ++++
Sbjct: 121 NVRKDDPTLLSSGRVQLV 138

>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With S-Adenosyl-L- Homocysteine Length = 227

Iteration: 1
 Score =  156 bits (394), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 79/216 (36%), Positives = 126/216 (58%), Gaps = 5/216 (2%)
Query: 58  FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAP 117
           +++ G    DL+  L+D G I ++ VAQA  + DR +++   PY D    +G    ++AP
Sbjct: 9   WRSVGANNEDLIRQLKDHGVIASDAVAQAMKETDRKHYSPRNPYMDAPQPIGGGVTISAP 68
Query: 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTG-----KVIGVEHIPELIE 172
           +  A A E L+ HL  GA++LD+GSGSGY T  F   +   G     +++G+EH  EL+ 
Sbjct: 69  HMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVR 128
Query: 173 ASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGG 232
            S  N++  ++ +LDSG++ IVE D R+GY P APY+ I+ G    + P+ ++NQL  GG
Sbjct: 129 RSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGG 188
Query: 233 RILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAY 268
           R++ P+GP    Q + Q D+  +  ++ T L  V Y
Sbjct: 189 RLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVMY 224

>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl Methyltranferase Length = 215

Iteration: 1
 Score = 99.4 bits (246), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 101/203 (49%), Gaps = 14/203 (6%)
Query: 76  GKIRTERVAQAFYKVDRGNFA----NEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHL 131
           G I+++RV  A  KV R  F      E  Y D    +GY   ++A + +    E L L  
Sbjct: 18  GYIKSKRVIDALLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMMCELLDLK- 76
Query: 132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRV 191
             G KVL++G+G GY   V A +VG  G V+ +E IPEL E + R + K   D      V
Sbjct: 77  -PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-----NV 130
Query: 192 RIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQID 251
            ++  D   GY P APYD IY      ++P  ++ QLK GG++L P+G     Q+L   +
Sbjct: 131 IVIVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVGRY--LQRLVLAE 188
Query: 252 RFHDNTLQKTDLFEVAYDAIMRK 274
           +  D  + K D   VA+  ++ K
Sbjct: 189 KRGDEIIIK-DCGPVAFVPLVGK 210

>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O- Methyltransferase With S-Adenosylmethionine Length = 235

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 100/194 (51%), Gaps = 19/194 (9%)
Query: 69  VNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQ-----DVSASLGYAGVMNAPNQIADA 123
           V  L+  G IR++ V +AF K  R   + E+ Y+     D    +     ++AP+ +A  
Sbjct: 25  VEMLKAEGIIRSKEVERAFLKYPR-YLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIM 83
Query: 124 AE--NLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKG 181
            E  NLK     G  +L++G+GSG+   + + +V     V  +E IPEL+E + RN+ + 
Sbjct: 84  LEIANLK----PGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERA 137
Query: 182 NKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPM 241
                    V ++  D  +G+ P+APYDVI       ++P  ++ QLK GG+++ P+G  
Sbjct: 138 GVK-----NVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSY 192
Query: 242 DDFQKLTQIDRFHD 255
             +Q+L ++ +  D
Sbjct: 193 HLWQELLEVRKTKD 206

>pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O- Methyltransferase Beta-Aspartate Methyltransferase (Pcmt) From Plasmodium Falciparum In Complex With S-Adenosyl-L-Homocysteine Length = 227

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 109/226 (48%), Gaps = 10/226 (4%)
Query: 56  NHFKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMN 115
           N +K        L+ +L+  G I  + V     +VDRG +  E PY D    + +   ++
Sbjct: 3   NMYKLSENNHKSLLENLKRRGIIDDDDVYNTMLQVDRGKYIKEIPYIDTPVYISHGVTIS 62
Query: 116 APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFA----HMVGPTGKVIGVEHIPELI 171
           AP+  A + + L   L  G++ +D+GSGSGY T   A     +      VIG+E + +L+
Sbjct: 63  APHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLV 122
Query: 172 EASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAP----YDVIYYGGCVSEVPSRVLNQ 227
             SL NI +   +LL     +I+  +  +    E      +D I+ G   SE+P  +++ 
Sbjct: 123 NFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELPEILVDL 182
Query: 228 LKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMR 273
           L + G+++ PI   D  Q L +I +  +  + K  LF+V + ++ +
Sbjct: 183 LAENGKLIIPIEE-DYTQVLYEITK-KNGKIIKDRLFDVCFVSLKK 226

>pdb|3LBF|A Chain A, Crystal Structure Of Protein L-Isoaspartyl Methyltransferase From Escherichia Coli Length = 210

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 17/189 (8%)
Query: 68  LVNHLRDIGKIRTERVAQAFYKVDRGNFANE----EPYQDVSASLGYAGVMNAPNQIADA 123
           L++ LR  G I+ E+V  A   V R  F +E    + + +++  +G    ++ P  +A  
Sbjct: 11  LLDQLRAQG-IQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARM 69
Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
            E L+L     ++VL++G+GSGYQT + AH+V     V  VE I  L   + R +     
Sbjct: 70  TELLEL--TPQSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKN--- 121
Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDD 243
             LD   V     D  +G+   AP+D I       E+P+ ++ QL +GG ++ P+G  ++
Sbjct: 122 --LDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVG--EE 177
Query: 244 FQKLTQIDR 252
            Q L ++ R
Sbjct: 178 HQYLKRVRR 186

>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase Length = 317

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 18/169 (10%)
Query: 80  TERVAQAFYKVDRGNFANEE-----PYQDVSASLGY-----AGVMNAPNQIADAAENLKL 129
           ++ +A+AF ++ R  F  +       Y+D+   + Y         + P+ +A   E + L
Sbjct: 15  SDHIAKAFLEIPREEFLTKSYPLSYVYEDI-VLVSYDDGEEYSTSSQPSLMALFMEWVGL 73
Query: 130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG 189
               G +VL++G G+GY   V + +VG  G V+ VE+  ++ E + RN+ +     L   
Sbjct: 74  D--KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER-----LGIE 126
Query: 190 RVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPI 238
            V  V  D   G    +PYDVI+    V EVP     QLK+GGR++ PI
Sbjct: 127 NVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPI 175

>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase Length = 317

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH---MMDIA 411
           SS+ S+  +  + ++ L +G +VLEIG G+GY A +M+ +VG  G V  +E+   + +IA
Sbjct: 58  SSQPSLMALF-MEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIA 116
Query: 412 IESIANISTNHIDLIANETIEIIPHI 437
             ++  +   ++  +  +    +P  
Sbjct: 117 KRNVERLGIENVIFVCGDGYYGVPEF 142

>pdb|1VBF|A Chain A, Crystal Structure Of Protein L-Isoaspartate O-Methyltransferase Homologue From Sulfolobus Tokodaii Length = 231

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 96/201 (47%), Gaps = 20/201 (9%)
Query: 77  KIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVD--- 133
           KI+T+ +A+AF KVDR  F  E   +D + +  +  +   P  I   A NL +  +D   
Sbjct: 10  KIKTQELAEAFNKVDRSLFLPEN-LKDYAYAHTHEALPILPG-INTTALNLGIFXLDELD 67
Query: 134 ---GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGR 190
              G KVL++G+G GY T + A +V    KV+ VE        + +  +  +K L     
Sbjct: 68  LHKGQKVLEIGTGIGYYTALIAEIVD---KVVSVE-------INEKXYNYASKLLSYYNN 117
Query: 191 VRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQI 250
           ++++  D   GY  E PYD +        +  +   QLK+GG  + PIG +   QKL ++
Sbjct: 118 IKLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIXILPIG-VGRVQKLYKV 176
Query: 251 DRFHDNTLQKTDLFEVAYDAI 271
            +   N+    +L EV +  I
Sbjct: 177 IK-KGNSPSLENLGEVXFGRI 196

>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase From Aquifex Aeolicus Length = 219

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 119 QIADAAENLK-LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
           ++ D  + LK   L +G  VLD+G+G+G+     + MVG  GKV  ++   E++  +   
Sbjct: 22  ELFDPEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEK 81
Query: 178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEV--PSRVLNQLKKGGRIL 235
           ++K     L    V +++++  +  LP+   D I+      E+  P + L +LK+  +  
Sbjct: 82  VNK-----LGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPF 136
Query: 236 APIGPMD 242
           A +  +D
Sbjct: 137 AYLAIID 143

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	511
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	3e-69
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	7e-16
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	1e-15
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	1e-67
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	3e-13
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	5e-13
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	3e-61
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	1e-12
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	3e-12
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	2e-55
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	3e-11
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	8e-11
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	2e-55
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	1e-13
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	2e-13
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	3e-48
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	2e-10
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	6e-10
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	2e-47
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	6e-09
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	1e-08
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	3e-46
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	1e-12
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	2e-12
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	3e-14
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	8e-09
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	8e-09
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	4e-14
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	4e-07
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	4e-07
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	2e-13
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	5e-07
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	7e-07
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	7e-13
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	5e-05
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	1e-04
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	7e-13
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	7e-07
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	7e-07
2b25_A	336	Hypothetical protein; structural genomics, methyl	2e-12
2b25_A	336	Hypothetical protein; structural genomics, methyl	2e-06
2b25_A	336	Hypothetical protein; structural genomics, methyl	2e-06
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	2e-12
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	3e-07
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	5e-07
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	5e-12
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	3e-11
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	6e-06
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	8e-06
3ocj_A	305	Putative exported protein; structural genomics, PS	4e-11
3ocj_A	305	Putative exported protein; structural genomics, PS	9e-06
3ocj_A	305	Putative exported protein; structural genomics, PS	9e-06
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	4e-11
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	9e-05
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	9e-05
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	4e-11
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	6e-11
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	6e-11
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	8e-04
3f4k_A	257	Putative methyltransferase; structural genomics, P	1e-10
3f4k_A	257	Putative methyltransferase; structural genomics, P	3e-06
3f4k_A	257	Putative methyltransferase; structural genomics, P	5e-04
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	3e-10
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	1e-07
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	1e-07
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	3e-10
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	1e-06
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	1e-06
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	4e-10
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	8e-07
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	1e-05
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	4e-10
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	1e-06
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	6e-06
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	5e-10
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	4e-04
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	4e-04
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	7e-10
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	2e-06
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	6e-04
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	1e-09
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	9e-04
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	4e-09
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	8e-04
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	5e-09
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	7e-05
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	7e-05
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	6e-09
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	1e-06
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	8e-09
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	1e-08
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	2e-08
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	4e-08
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	5e-08
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	4e-04
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	4e-04
3i9f_A	170	Putative type 11 methyltransferase; structural gen	2e-07
3i9f_A	170	Putative type 11 methyltransferase; structural gen	5e-05
3i9f_A	170	Putative type 11 methyltransferase; structural gen	5e-05
3ll7_A	410	Putative methyltransferase; methytransferase, stru	2e-07
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	2e-07
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	3e-05
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	4e-04
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	2e-07
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	4e-07
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	5e-07
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	1e-06
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	2e-06
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	2e-06
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	2e-06
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	3e-06
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	4e-06
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	5e-06
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	5e-06
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	7e-06
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	8e-06
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	9e-06
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	1e-05
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	5e-04
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	7e-04
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	1e-05
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	1e-05
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	3e-05
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	8e-05
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	1e-04
3lpm_A	259	Putative methyltransferase; structural genomics, p	3e-05
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	4e-05
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	4e-05
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	4e-05
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	5e-05
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	5e-05
1xxl_A	239	YCGJ protein; structural genomics, protein structu	6e-05
1xxl_A	239	YCGJ protein; structural genomics, protein structu	2e-04
1xxl_A	239	YCGJ protein; structural genomics, protein structu	2e-04
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	8e-05
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	8e-05
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	1e-04
3ege_A	261	Putative methyltransferase from antibiotic biosyn	1e-04
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	1e-04
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	1e-04
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	1e-04
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	1e-04
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	1e-04
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	1e-04
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	2e-04
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	3e-04
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	2e-04
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	2e-04
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	2e-04
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	3e-04
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	3e-04
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	3e-04
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	3e-04
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	3e-04
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	3e-04
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	3e-04
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	4e-04
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	3e-04
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	4e-04
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	4e-04
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	4e-04
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	4e-04
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	5e-04
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	5e-04
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	5e-04
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	9e-04
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	5e-04
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	6e-04
3lcc_A	235	Putative methyl chloride transferase; halide methy	6e-04
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	6e-04
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	7e-04
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	8e-04
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	8e-04
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	8e-04
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	8e-04

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* Length = 226

 Score =  220 bits (563), Expect = 3e-69
 Identities = 88/202 (43%), Positives = 125/202 (61%)

Query: 67  DLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAEN 126
           +L+++LR  G I+T++V +     DR ++A   PY D   S+G+   ++AP+  A A E 
Sbjct: 11  ELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAPHMHAYALEL 70

Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLL 186
           L   L +GAK LD+GSGSG  T  FA MVG TGKVIG++HI EL++ S+ N+ K +  LL
Sbjct: 71  LFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLL 130

Query: 187 DSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQK 246
            SGRV++V  D R GY  EAPYD I+ G     VP  +++QLK GGR++ P+GP    Q 
Sbjct: 131 SSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQM 190

Query: 247 LTQIDRFHDNTLQKTDLFEVAY 268
           L Q D+  D +++   L  V Y
Sbjct: 191 LEQYDKLQDGSIKMKPLMGVIY 212

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* Length = 226

 Score = 75.7 bits (187), Expect = 7e-16
 Identities = 26/74 (35%), Positives = 48/74 (64%)

Query: 361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST 420
           A+ L+L +  LH GAK L++GSGSG L    A +VG TG V G++H+ ++  +S+ N+  
Sbjct: 65  AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK 124

Query: 421 NHIDLIANETIEII 434
           +   L+++  ++++
Sbjct: 125 DDPTLLSSGRVQLV 138

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* Length = 226

 Score = 74.9 bits (185), Expect = 1e-15
 Identities = 27/78 (34%), Positives = 49/78 (62%), Gaps = 4/78 (5%)

Query: 435 PHI----LDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA 490
           PH+    L+L +  LH GAK L++GSGSG L    A +VG TG V G++H+ ++  +S+ 
Sbjct: 61  PHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVN 120

Query: 491 NISTNHIDLIANETIEII 508
           N+  +   L+++  ++++
Sbjct: 121 NVRKDDPTLLSSGRVQLV 138

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 Length = 227

 Score =  216 bits (552), Expect = 1e-67
 Identities = 78/207 (37%), Positives = 122/207 (58%), Gaps = 5/207 (2%)

Query: 67  DLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAEN 126
           DL+  L+D G I ++ VAQA  + DR +++   PY D    +G    ++AP+  A A E 
Sbjct: 18  DLIRQLKDHGVIASDAVAQAMKETDRKHYSPRNPYMDAPQPIGGGVTISAPHMHAFALEY 77

Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTG-----KVIGVEHIPELIEASLRNISKG 181
           L+ HL  GA++LD+GSGSGY T  F   +   G     +++G+EH  EL+  S  N++  
Sbjct: 78  LRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTD 137

Query: 182 NKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPM 241
           ++ +LDSG++ IVE D R+GY P APY+ I+ G    + P+ ++NQL  GGR++ P+GP 
Sbjct: 138 DRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVGPD 197

Query: 242 DDFQKLTQIDRFHDNTLQKTDLFEVAY 268
              Q + Q D+  +  ++ T L  V Y
Sbjct: 198 GGSQYMQQYDKDANGKVEMTRLMGVMY 224

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 Length = 227

 Score = 68.0 bits (167), Expect = 3e-13
 Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 5/79 (6%)

Query: 361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTG-----HVTGLEHMMDIAIESI 415
           A  L+    +L  GA++L++GSGSGYL       +   G      + G+EH  ++   S 
Sbjct: 72  AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSK 131

Query: 416 ANISTNHIDLIANETIEII 434
           AN++T+   ++ +  + I+
Sbjct: 132 ANLNTDDRSMLDSGQLLIV 150

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 Length = 227

 Score = 67.7 bits (166), Expect = 5e-13
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 9/83 (10%)

Query: 435 PHI----LDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTG-----HVTGLEHMMDIA 485
           PH+    L+    +L  GA++L++GSGSGYL       +   G      + G+EH  ++ 
Sbjct: 68  PHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELV 127

Query: 486 IESIANISTNHIDLIANETIEII 508
             S AN++T+   ++ +  + I+
Sbjct: 128 RRSKANLNTDDRSMLDSGQLLIV 150

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} Length = 227

 Score =  199 bits (508), Expect = 3e-61
 Identities = 59/210 (28%), Positives = 102/210 (48%), Gaps = 10/210 (4%)

Query: 67  DLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAEN 126
            L+ +L+  G I  + V     +VDRG +  E PY D    + +   ++AP+  A + + 
Sbjct: 14  SLLENLKRRGIIDDDDVYNTMLQVDRGKYIKEIPYIDTPVYISHGVTISAPHMHALSLKR 73

Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAH----MVGPTGKVIGVEHIPELIEASLRNISKGN 182
           L   L  G++ +D+GSGSGY T   A     +      VIG+E + +L+  SL NI +  
Sbjct: 74  LINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDK 133

Query: 183 KDLLDSGRVRIVEADA----REGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPI 238
            +LL     +I+  +      E       +D I+ G   SE+P  +++ L + G+++ PI
Sbjct: 134 PELLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELPEILVDLLAENGKLIIPI 193

Query: 239 GPMDDFQKLTQIDRFHDNTLQKTDLFEVAY 268
              D  Q L +I +  +  + K  LF+V +
Sbjct: 194 EE-DYTQVLYEITK-KNGKIIKDRLFDVCF 221

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} Length = 227

 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAH----LVGPTGHVTGLEHMMDIAIESIA 416
           A  L      L  G++ +++GSGSGYL   MA     L     +V GLE + D+   S+ 
Sbjct: 68  ALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLE 127

Query: 417 NISTNHIDLIANETIEII 434
           NI  +  +L+  +  +II
Sbjct: 128 NIKRDKPELLKIDNFKII 145

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} Length = 227

 Score = 65.3 bits (160), Expect = 3e-12
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 8/82 (9%)

Query: 435 PHI----LDLCYLNLHRGAKVLEIGSGSGYLATLMAH----LVGPTGHVTGLEHMMDIAI 486
           PH+    L      L  G++ +++GSGSGYL   MA     L     +V GLE + D+  
Sbjct: 64  PHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVN 123

Query: 487 ESIANISTNHIDLIANETIEII 508
            S+ NI  +  +L+  +  +II
Sbjct: 124 FSLENIKRDKPELLKIDNFKII 145

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Length = 235

 Score =  184 bits (470), Expect = 2e-55
 Identities = 54/205 (26%), Positives = 103/205 (50%), Gaps = 14/205 (6%)

Query: 68  LVNHLRDIGKIRTERVAQAFYKVDRGNFANEE----PYQDVSASLGYAGVMNAPNQIADA 123
            V  L+  G IR++ V +AF K  R     ++     + D    +     ++AP+ +A  
Sbjct: 24  TVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIM 83

Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
            E    +L  G  +L++G+GSG+   + + +V     V  +E IPEL+E + RN+ +   
Sbjct: 84  LE--IANLKPGMNILEVGTGSGWNAALISEIVKT--DVYTIERIPELVEFAKRNLER--- 136

Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDD 243
                  V ++  D  +G+ P+APYDVI       ++P  ++ QLK GG+++ P+G    
Sbjct: 137 --AGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHL 194

Query: 244 FQKLTQIDRFHDNTLQKTDLFEVAY 268
           +Q+L ++ +   + ++  +   VA+
Sbjct: 195 WQELLEVRK-TKDGIKIKNHGGVAF 218

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Length = 235

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI 418
           A +L++   NL  G  +LE+G+GSG+ A L++ +V     V  +E + ++   +  N+
Sbjct: 81  AIMLEI--ANLKPGMNILEVGTGSGWNAALISEIVKT--DVYTIERIPELVEFAKRNL 134

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Length = 235

 Score = 61.1 bits (149), Expect = 8e-11
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 8/62 (12%)

Query: 435 PHI----LDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA 490
           PH+    L++   NL  G  +LE+G+GSG+ A L++ +V     V  +E + ++   +  
Sbjct: 77  PHMVAIMLEI--ANLKPGMNILEVGTGSGWNAALISEIVKT--DVYTIERIPELVEFAKR 132

Query: 491 NI 492
           N+
Sbjct: 133 NL 134

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Length = 215

 Score =  184 bits (469), Expect = 2e-55
 Identities = 67/206 (32%), Positives = 100/206 (48%), Gaps = 14/206 (6%)

Query: 67  DLVNHLRDIGKIRTERVAQAFYKVDRGNFANEE----PYQDVSASLGYAGVMNAPNQIAD 122
            ++  L   G I+++RV  A  KV R  F  E      Y D    +GY   ++A + +  
Sbjct: 9   AVIEKLIREGYIKSKRVIDALLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGM 68

Query: 123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGN 182
             E L L    G KVL++G+G GY   V A +VG  G V+ +E IPEL E + R + K  
Sbjct: 69  MCELLDLK--PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK-- 124

Query: 183 KDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMD 242
              L    V ++  D   GY P APYD IY      ++P  ++ QLK GG++L P+G   
Sbjct: 125 ---LGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVG--R 179

Query: 243 DFQKLTQIDRFHDNTLQKTDLFEVAY 268
             Q+L   ++   + +   D   VA+
Sbjct: 180 YLQRLVLAEK-RGDEIIIKDCGPVAF 204

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Length = 215

 Score = 69.5 bits (171), Expect = 1e-13
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST 420
             + +L  L+L  G KVLEIG+G GY A + A +VG  G V  +E + ++A ++   +  
Sbjct: 67  GMMCEL--LDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK 124

Query: 421 NHID 424
              D
Sbjct: 125 LGYD 128

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Length = 215

 Score = 68.3 bits (168), Expect = 2e-13
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 435 PHI----LDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA 490
            H+     +L  L+L  G KVLEIG+G GY A + A +VG  G V  +E + ++A ++  
Sbjct: 63  IHMVGMMCEL--LDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAER 120

Query: 491 NISTNHID 498
            +     D
Sbjct: 121 TLRKLGYD 128

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Length = 231

 Score =  165 bits (420), Expect = 3e-48
 Identities = 56/197 (28%), Positives = 88/197 (44%), Gaps = 20/197 (10%)

Query: 78  IRTERVAQAFYKVDRGNFANEE----PYQDVSASL--GYAGVMNAPNQIADAAENLKLHL 131
           I+T+ +A+AF KVDR  F  E      Y     +L         A N      + L LH 
Sbjct: 11  IKTQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDELDLH- 69

Query: 132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRV 191
             G KVL++G+G GY T + A +V    KV+ VE   ++   + +        L     +
Sbjct: 70  -KGQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKL-------LSYYNNI 118

Query: 192 RIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQID 251
           +++  D   GY  E PYD +        +  +   QLK+GG ++ PIG     QKL ++ 
Sbjct: 119 KLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGV-GRVQKLYKVI 177

Query: 252 RFHDNTLQKTDLFEVAY 268
           +   N+    +L EV +
Sbjct: 178 K-KGNSPSLENLGEVMF 193

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Length = 231

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)

Query: 361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS 419
             +LD   L+LH+G KVLEIG+G GY   L+A +V     V  +E    +   +   +S
Sbjct: 60  IFMLDE--LDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLS 113

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Length = 231

 Score = 58.4 bits (142), Expect = 6e-10
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS 493
           L+LH+G KVLEIG+G GY   L+A +V     V  +E    +   +   +S
Sbjct: 66  LDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLS 113

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Length = 210

 Score =  162 bits (412), Expect = 2e-47
 Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 18/205 (8%)

Query: 68  LVNHLRDIGKIRTERVAQAFYKVDRGNFANEE----PYQDVSASLGYAGVMNAPNQIADA 123
           L++ LR  G I+ E+V  A   V R  F +E      + +++  +G    ++ P  +A  
Sbjct: 11  LLDQLRAQG-IQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARM 69

Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
            E L+L     ++VL++G+GSGYQT + AH+V     V  VE I  L   + R +     
Sbjct: 70  TELLELT--PQSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKN--- 121

Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDD 243
             LD   V     D  +G+   AP+D I       E+P+ ++ QL +GG ++ P+G  ++
Sbjct: 122 --LDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVG--EE 177

Query: 244 FQKLTQIDRFHDNTLQKTDLFEVAY 268
            Q L ++ R          +  V +
Sbjct: 178 HQYLKRVRR-RGGEFIIDTVEAVRF 201

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Length = 210

 Score = 55.3 bits (134), Expect = 6e-09
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 5/64 (7%)

Query: 361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST 420
           A + +L  L L   ++VLEIG+GSGY   ++AHLV    HV  +E +  +  ++   +  
Sbjct: 67  ARMTEL--LELTPQSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKN 121

Query: 421 NHID 424
             + 
Sbjct: 122 LDLH 125

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Length = 210

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHID 498
           L L   ++VLEIG+GSGY   ++AHLV    HV  +E +  +  ++   +    + 
Sbjct: 73  LELTPQSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKNLDLH 125

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317

 Score =  162 bits (413), Expect = 3e-46
 Identities = 57/210 (27%), Positives = 92/210 (43%), Gaps = 18/210 (8%)

Query: 68  LVNHLRDIGKIRTERVAQAFYKVDRGNF-----ANEEPYQDVSASLGYAGVMN----APN 118
           L   L+  G   ++ +A+AF ++ R  F          Y+D+       G        P+
Sbjct: 5   LFWILKKYG--VSDHIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPS 62

Query: 119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNI 178
            +A   E + L    G +VL++G G+GY   V + +VG  G V+ VE+  ++ E + RN+
Sbjct: 63  LMALFMEWVGLD--KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNV 120

Query: 179 SKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPI 238
            +     L    V  V  D   G    +PYDVI+    V EVP     QLK+GGR++ PI
Sbjct: 121 ER-----LGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPI 175

Query: 239 GPMDDFQKLTQIDRFHDNTLQKTDLFEVAY 268
                 ++   + +  D  L      E  +
Sbjct: 176 NLKLSRRQPAFLFKKKDPYLVGNYKLETRF 205

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317

 Score = 67.5 bits (165), Expect = 1e-12
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS 419
           A  ++   + L +G +VLEIG G+GY A +M+ +VG  G V  +E+   I   +  N+ 
Sbjct: 65  ALFMEW--VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVE 121

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317

 Score = 67.5 bits (165), Expect = 2e-12
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)

Query: 435 PHI----LDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA 490
           P +    ++   + L +G +VLEIG G+GY A +M+ +VG  G V  +E+   I   +  
Sbjct: 61  PSLMALFMEW--VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR 118

Query: 491 NIS 493
           N+ 
Sbjct: 119 NVE 121

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 70.9 bits (174), Expect = 3e-14
 Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 11/114 (9%)

Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
           +  L +G  VLD+G+G+G+     + MVG  GKV  ++   E++  +   ++K       
Sbjct: 32  EFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK--- 88

Query: 188 SGRVRIVEADAREGYLPEAPYDVIYYGGCVSEV--PSRVLNQ----LKKGGRIL 235
              V +++++  +  LP+   D I+      E+  P + L +     K    + 
Sbjct: 89  --NVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLA 140

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 54.7 bits (132), Expect = 8e-09
 Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDL 425
             L  G  VL++G+G+G+    ++ +VG  G V  +   E M++ A E +  +   ++++
Sbjct: 33  FGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEV 92

Query: 426 I 426
           +
Sbjct: 93  L 93

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 54.7 bits (132), Expect = 8e-09
 Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDL 499
             L  G  VL++G+G+G+    ++ +VG  G V  +   E M++ A E +  +   ++++
Sbjct: 33  FGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEV 92

Query: 500 I 500
           +
Sbjct: 93  L 93

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255

 Score = 71.6 bits (175), Expect = 4e-14
 Identities = 50/231 (21%), Positives = 74/231 (32%), Gaps = 16/231 (6%)

Query: 42  FPEGHWVI--PPPDNLNHFK-NEGTCQTDL--VNHLRDIGKIRTERVAQAFYKVDRGNFA 96
             EG  V+   P         ++    TDL  +     IG+       +A        F 
Sbjct: 2   IREGDKVVLVDPRGKRYLITVSKRDFHTDLGILKLEEIIGR----NFGEAIKSHKGHEFK 57

Query: 97  NEEP-YQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMV 155
              P   D    +     +  P   A       +    G  +++ G GSG  T   A++V
Sbjct: 58  ILRPRIVDYLDKMKRGPQIVHPKDAALIVAYAGIS--PGDFIVEAGVGSGALTLFLANIV 115

Query: 156 GPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGG 215
           GP G+V+  E   +  + +  NI     D     RV I   D  EG   E    VI    
Sbjct: 116 GPEGRVVSYEIREDFAKLAWENIKWAGFD----DRVTIKLKDIYEGIEEENVDHVILDLP 171

Query: 216 CVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEV 266
               V       LK GG  +A     +   +L +  R   +   K     V
Sbjct: 172 QPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTINV 222

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255

 Score = 50.4 bits (120), Expect = 4e-07
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 366 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIAN 417
           + Y  +  G  ++E G GSG L   +A++VGP G V   E       +A E+I  
Sbjct: 86  VAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKW 140

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255

 Score = 50.4 bits (120), Expect = 4e-07
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIAN 491
           + Y  +  G  ++E G GSG L   +A++VGP G V   E       +A E+I  
Sbjct: 86  VAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKW 140

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 70.9 bits (173), Expect = 2e-13
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 15/122 (12%)

Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
              ++GA VLDLG G+G    + + +VG  GKVIGV+ +   +E + + +    +    S
Sbjct: 79  DGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGS 138

Query: 189 GRVRIVE---------ADAREGYLPEAPYDVIYYGGCVSEVP--SRVLNQ----LKKGGR 233
                V          A A    +P++  D++      +       +  +    L+ GG 
Sbjct: 139 PSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGE 198

Query: 234 IL 235
           + 
Sbjct: 199 LY 200

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 50.9 bits (121), Expect = 5e-07
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDL 499
                GA VL++G G+G    L + LVG  G V G+   ++ +++A + +   +      
Sbjct: 79  DGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGS 138

Query: 500 IANETIEIIREF 511
            +   +  ++ F
Sbjct: 139 PSRSNVRFLKGF 150

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 50.5 bits (120), Expect = 7e-07
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIA 411
                GA VL++G G+G    L + LVG  G V G+   ++ +++A
Sbjct: 79  DGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVA 124

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 65.9 bits (161), Expect = 7e-13
 Identities = 27/114 (23%), Positives = 40/114 (35%), Gaps = 11/114 (9%)

Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
            L       + D+G GSG     +     P    +  E   E  E  L N        L 
Sbjct: 20  ALAPKPHETLWDIGGGSGSIAIEWLRS-TPQTTAVCFEISEERRERILSNAIN-----LG 73

Query: 188 SGRVRIVEADAREGY--LPEAPYDVIY--YGGCVSEVPSRVLNQLKKGGRILAP 237
                 V+  A   +  +P+ P DVI+   G     V +    +L  GGR++A 
Sbjct: 74  VSDRIAVQQGAPRAFDDVPDNP-DVIFIGGGLTAPGVFAAAWKRLPVGGRLVAN 126

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 12/80 (15%), Positives = 21/80 (26%), Gaps = 4/80 (5%)

Query: 363 ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH 422
            L +  L       + +IG GSG +A        P       E   +     ++N     
Sbjct: 15  ALAISALAPKPHETLWDIGGGSGSIAIEWLRS-TPQTTAVCFEISEERRERILSNAINLG 73

Query: 423 ---IDLIANETIEIIPHILD 439
                 +          + D
Sbjct: 74  VSDRIAVQQGAPRAFDDVPD 93

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 1/62 (1%)

Query: 437 ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH 496
            L +  L       + +IG GSG +A        P       E   +     ++N     
Sbjct: 15  ALAISALAPKPHETLWDIGGGSGSIAIEWLRS-TPQTTAVCFEISEERRERILSNAINLG 73

Query: 497 ID 498
           + 
Sbjct: 74  VS 75

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277

 Score = 68.1 bits (166), Expect = 7e-13
 Identities = 41/232 (17%), Positives = 77/232 (33%), Gaps = 17/232 (7%)

Query: 28  IQNEDDFCRKDMDEFPEGHWVIPPPDNLNHF----KNEGTCQTDL--VNHLRDIGKIRTE 81
           I +      K  D    G  V+   ++ + F    + +    T L  ++      K   E
Sbjct: 6   IHHHHHHVGKVADTLKPGDRVLLSFEDESEFLVDLEKDKKLHTHLGIIDLNEVFEKGPGE 65

Query: 82  RVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLG 141
            +        +  +       D   ++     +  P   +  A  L +   +G +++D G
Sbjct: 66  IIRT---SAGKKGYILIPSLIDEIMNMKRRTQIVYPKDSSFIAMMLDVK--EGDRIIDTG 120

Query: 142 SGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG 201
            GSG    V A  VG +GKV   E   E  + +  N++K       + +VR +       
Sbjct: 121 VGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG---- 176

Query: 202 YLPEAPYDVIYYG-GCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDR 252
              E   D ++           +    LK GGR        +  Q+  +  +
Sbjct: 177 -FDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQ 227

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277

 Score = 50.0 bits (119), Expect = 7e-07
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 366 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIAN 417
              L++  G ++++ G GSG +  ++A  VG +G V   E       +A  ++  
Sbjct: 105 AMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTK 159

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277

 Score = 50.0 bits (119), Expect = 7e-07
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIAN 491
              L++  G ++++ G GSG +  ++A  VG +G V   E       +A  ++  
Sbjct: 105 AMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTK 159

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336

 Score = 67.9 bits (165), Expect = 2e-12
 Identities = 29/175 (16%), Positives = 55/175 (31%), Gaps = 11/175 (6%)

Query: 101 YQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGK 160
            +D    +     +  P  I      + ++   G  VL+ GSGSG  +   +  VG  G+
Sbjct: 75  LEDYVVLMKRGTAITFPKDINMILSMMDIN--PGDTVLEAGSGSGGMSLFLSKAVGSQGR 132

Query: 161 VIGVEHIPELIEASLRNISK--------GNKDLLDSGRVRIVEADAREGYLPEAPYDVIY 212
           VI  E   +  + + +N             ++  D+      +       +    +D + 
Sbjct: 133 VISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVA 192

Query: 213 YG-GCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEV 266
                           LK GG     +  +    +L    R  +  L    + EV
Sbjct: 193 LDMLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEKISEV 247

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336

 Score = 48.6 bits (115), Expect = 2e-06
 Identities = 17/54 (31%), Positives = 26/54 (48%)

Query: 366 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS 419
           L  ++++ G  VLE GSGSG ++  ++  VG  G V   E   D    +  N  
Sbjct: 98  LSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYK 151

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336

 Score = 48.6 bits (115), Expect = 2e-06
 Identities = 17/54 (31%), Positives = 26/54 (48%)

Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS 493
           L  ++++ G  VLE GSGSG ++  ++  VG  G V   E   D    +  N  
Sbjct: 98  LSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYK 151

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 65.3 bits (159), Expect = 2e-12
 Identities = 24/138 (17%), Positives = 51/138 (36%), Gaps = 20/138 (14%)

Query: 114 MNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEA 173
           +   N +  + + +K+ + +G  V+D   G+G  T   A +VG  G+V G +   + I  
Sbjct: 3   LTIKNSLGQSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIAN 62

Query: 174 SLRNISKGNKDLLDSGRVRIVEADAREG-YLPEAPYDVIYYGGCVSEVP----------- 221
           + + ++  N       RV +++   +      + P   + +                   
Sbjct: 63  TTKKLTDLN----LIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETT 118

Query: 222 ----SRVLNQLKKGGRIL 235
               S+ +  L  GG I 
Sbjct: 119 IQALSKAMELLVTGGIIT 136

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 49.9 bits (119), Expect = 3e-07
 Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 9/95 (9%)

Query: 359 SIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESI 415
             +H  D   + +  G  V++   G+G     +A LVG  G V G    +  +    + +
Sbjct: 10  GQSH--DYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKL 67

Query: 416 ANI-STNHIDLI---ANETIEIIPHILDLCYLNLH 446
            ++   + + LI        + I   +     NL 
Sbjct: 68  TDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLG 102

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 49.5 bits (118), Expect = 5e-07
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 8/80 (10%)

Query: 434 IPHILDLCY----LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESI 489
           I + L   +    + +  G  V++   G+G     +A LVG  G V G     DI  ++I
Sbjct: 5   IKNSLGQSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGF----DIQDKAI 60

Query: 490 ANISTNHIDLIANETIEIIR 509
           AN +    DL   + + +I+
Sbjct: 61  ANTTKKLTDLNLIDRVTLIK 80

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 63.9 bits (156), Expect = 5e-12
 Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 10/113 (8%)

Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
                     +D+G G+G  T   A       +V  ++  PE I  +  N+ +       
Sbjct: 28  LAEPGKNDVAVDVGCGTGGVTLELAG---RVRRVYAIDRNPEAISTTEMNLQR----HGL 80

Query: 188 SGRVRIVEADAREGYLPEAPYDVIYYGGC---VSEVPSRVLNQLKKGGRILAP 237
              V ++E DA E        D+   GG    + E+   + ++LK GGRI+  
Sbjct: 81  GDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVT 133

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Length = 248

 Score = 62.7 bits (152), Expect = 3e-11
 Identities = 33/220 (15%), Positives = 66/220 (30%), Gaps = 22/220 (10%)

Query: 39  MDEFPEGHWVIPPPDNLNHF---KNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNF 95
           M+ F EG +V+              + +              ++ + V      V    F
Sbjct: 1   MNSFKEGEYVLIRFGEKKFLRKLLPKQSLSVKK-------SVLKFDEVIGKPEGVKINGF 53

Query: 96  ANEEP--YQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAH 153
               P   + +         +  P      A  L L+     +VL+ G+GSG    V + 
Sbjct: 54  EVYRPTLEEIILLGFERKTQIIYPKDSFYIALKLNLN--KEKRVLEFGTGSGALLAVLSE 111

Query: 154 MVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYY 213
           + G       VE   +  + +L+              V+    D ++  +PE  +   + 
Sbjct: 112 VAGEVWTFEAVEEFYKTAQKNLKK-------FNLGKNVKFFNVDFKDAEVPEGIFHAAFV 164

Query: 214 -GGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDR 252
                     +V   L +G  +   +   +   KL +   
Sbjct: 165 DVREPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIE 204

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Length = 248

 Score = 46.5 bits (110), Expect = 6e-06
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 366 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA------NIS 419
              LNL++  +VLE G+GSG L  +++ + G       +E     A +++       N+ 
Sbjct: 84  ALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVK 143

Query: 420 TNHIDLIANETIEIIPH 436
             ++D    E  E I H
Sbjct: 144 FFNVDFKDAEVPEGIFH 160

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Length = 248

 Score = 46.5 bits (110), Expect = 8e-06
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA------NIS 493
              LNL++  +VLE G+GSG L  +++ + G       +E     A +++       N+ 
Sbjct: 84  ALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVK 143

Query: 494 TNHIDL 499
             ++D 
Sbjct: 144 FFNVDF 149

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 63.2 bits (153), Expect = 4e-11
 Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 9/118 (7%)

Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLL 186
           L+ HL  G  V  +  G   +     +   P  +++G+++ PE ++ + R  +       
Sbjct: 112 LQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALA-- 169

Query: 187 DSGRVRIVEADAREGYLP-EAPYDVIYYGGCVSEVP--SRVLNQLKKGGRILAPIGPM 241
             G++ +   DA +  L     YD++   G     P  +RV    ++  + L P G +
Sbjct: 170 --GQITLHRQDAWK--LDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGAL 223

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 46.6 bits (110), Expect = 9e-06
 Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 3/49 (6%)

Query: 371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIA 416
           L  G  V  +  G       + +   P   + G+      +D A    A
Sbjct: 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAA 164

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 46.6 bits (110), Expect = 9e-06
 Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 3/49 (6%)

Query: 445 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIA 490
           L  G  V  +  G       + +   P   + G+      +D A    A
Sbjct: 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAA 164

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Length = 258

 Score = 62.4 bits (151), Expect = 4e-11
 Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 7/162 (4%)

Query: 101 YQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGK 160
            ++    +  +     P   +     L L    G +VL+ G+GSG  T   A  VG  G 
Sbjct: 66  LEEYLLHMKRSATPTYPKDASAMVTLLDLA--PGMRVLEAGTGSGGLTLFLARAVGEKGL 123

Query: 161 VIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYG-GCVSE 219
           V   E  P  +  + RN+    +       VR       E  L EA YD +        +
Sbjct: 124 VESYEARPHHLAQAERNV----RAFWQVENVRFHLGKLEEAELEEAAYDGVALDLMEPWK 179

Query: 220 VPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKT 261
           V  +    LK    ++A +  +    +L +    H   L++ 
Sbjct: 180 VLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRLERV 221

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Length = 258

 Score = 43.1 bits (101), Expect = 9e-05
 Identities = 18/59 (30%), Positives = 26/59 (44%)

Query: 366 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHID 424
           +  L+L  G +VLE G+GSG L   +A  VG  G V   E       ++  N+      
Sbjct: 89  VTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV 147

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Length = 258

 Score = 43.1 bits (101), Expect = 9e-05
 Identities = 18/59 (30%), Positives = 26/59 (44%)

Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHID 498
           +  L+L  G +VLE G+GSG L   +A  VG  G V   E       ++  N+      
Sbjct: 89  VTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV 147

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204

 Score = 61.4 bits (149), Expect = 4e-11
 Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 8/110 (7%)

Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
            L    G  + D+G GSG  +  +       G+ I +E   + IE   +NI         
Sbjct: 50  ALAPRRGELLWDIGGGSGSVSVEWCL---AGGRAITIEPRADRIENIQKNIDT----YGL 102

Query: 188 SGRVRIVEADAREGYLPEAPYD-VIYYGGCVSEVPSRVLNQLKKGGRILA 236
           S R+R V+  A          + V   GG    +  R+   L  G RI+A
Sbjct: 103 SPRMRAVQGTAPAALADLPLPEAVFIGGGGSQALYDRLWEWLAPGTRIVA 152

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204

 Score = 61.1 bits (148), Expect = 6e-11
 Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 9/114 (7%)

Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
           KL L D   + D+G+GS   +   ++++ P G++  +E  P+ +     N+ K       
Sbjct: 35  KLRLQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLKK-----FV 88

Query: 188 SGRVRIVEADAREGYLPEAPYDVIYYGGC---VSEVPSRVLNQLKKGGRILAPI 238
           +  V +VEA A EG       D ++ GG    + E+   V  +LK  G I+   
Sbjct: 89  ARNVTLVEAFAPEGLDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNA 142

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 62.5 bits (151), Expect = 6e-11
 Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 13/117 (11%)

Query: 123 AAENLKLHLVDGAKVLDLGSGSGYQTC-VFAHMVGPTGKVIGVEHIPELIEASLRNISKG 181
             E        G + + +G G    T  + +H+ G   +V  VE  P++ E S + I   
Sbjct: 112 KNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYG--MRVNVVEIEPDIAELSRKVIEGL 169

Query: 182 NKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSE---VPSRVLNQLKKGGRIL 235
             D      V ++  D     +    +DV+           V   +   +    RI+
Sbjct: 170 GVD-----GVNVITGDETV--IDGLEFDVLMVAALAEPKRRVFRNIHRYVDTETRII 219

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 40.6 bits (94), Expect = 8e-04
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 369 LNLHRGAKVLEIGSGSGYLAT-LMAHLVGPTGHVTGLEH---MMDIAIESIANISTNHID 424
               RG + + IG G   L   L++H+ G    V  +E    + +++ + I  +  + ++
Sbjct: 118 GRFRRGERAVFIGGGPLPLTGILLSHVYG--MRVNVVEIEPDIAELSRKVIEGLGVDGVN 175

Query: 425 LIANETIEIIPHILDLCYLNLHRGAKV 451
           +I  +   I     D+  +      K 
Sbjct: 176 VITGDETVIDGLEFDVLMVAALAEPKR 202

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 60.6 bits (147), Expect = 1e-10
 Identities = 43/192 (22%), Positives = 74/192 (38%), Gaps = 14/192 (7%)

Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
           A +    L D AK+ D+G G+G QT   A  V   G++ G++  P+ IE    N  K N 
Sbjct: 37  AVSFINELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANC 94

Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVP-SRVLNQ----LKKGGRILAPI 238
               + RV+ +              D+I+  G +  +   R +N+    LKKGG I    
Sbjct: 95  ----ADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSE 150

Query: 239 GPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQM--DPVDENLFTLM 296
                 ++  +I+ F  +   +  +        M +A       F +  +   E+ F   
Sbjct: 151 ASWFTSERPAEIEDFWMDAYPEISVIP-TCIDKMERAGYTPTAHFILPENCWTEHYFAPQ 209

Query: 297 DKDSDELFSERV 308
           D+  +    E  
Sbjct: 210 DEVRETFMKEHA 221

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 6/76 (7%)

Query: 345 VHGSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL 404
                   GP S  +    +      L   AK+ +IG G+G     +A  V   G +TG+
Sbjct: 19  YFKLLKRQGPGSPEATRKAVSFI-NELTDDAKIADIGCGTGGQTLFLADYVK--GQITGI 75

Query: 405 ---EHMMDIAIESIAN 417
                 ++I  E+   
Sbjct: 76  DLFPDFIEIFNENAVK 91

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIAN 491
            L   AK+ +IG G+G     +A  V   G +TG+      ++I  E+   
Sbjct: 43  ELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVK 91

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 60.0 bits (145), Expect = 3e-10
 Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 12/114 (10%)

Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG---R 190
           G K+L++G G G  + V A  VG +G V G++ I      +   + +    LL      R
Sbjct: 44  GEKILEIGCGQGDLSAVLADQVGSSGHVTGID-IASPDYGAPLTLGQAWNHLLAGPLGDR 102

Query: 191 VRIVEADAREGYL---PEAPYDVIYYGGCVSEVPS-----RVLNQLKKGGRILA 236
           + +         L    +  +D +     +    S      +   +      + 
Sbjct: 103 LTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVD 156

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 52.0 bits (124), Expect = 1e-07
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIAN 417
             +  G K+LEIG G G L+ ++A  VG +GHVTG+    DIA      
Sbjct: 39  WQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGI----DIASPDYGA 83

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 52.0 bits (124), Expect = 1e-07
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIAN 491
             +  G K+LEIG G G L+ ++A  VG +GHVTG+    DIA      
Sbjct: 39  WQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGI----DIASPDYGA 83

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 60.0 bits (145), Expect = 3e-10
 Identities = 24/153 (15%), Positives = 51/153 (33%), Gaps = 15/153 (9%)

Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
             +     ++D G G GY   V   ++    K  G++    L+  +         D    
Sbjct: 18  WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYD---- 73

Query: 189 GRVRIVEADAREGYLP-EAPYDVIY--YGGCVSEVPSRVLNQ----LKKGGRILAPIGPM 241
                +E DA E  +     YD+            P  +L +    +KKGG+I+      
Sbjct: 74  --SEFLEGDATE--IELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHW 129

Query: 242 DDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRK 274
                   +D    +   +  + +  +++  ++
Sbjct: 130 ISNMASYLLDGEKQSEFIQLGVLQKLFESDTQR 162

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTN 421
              + +   +++ G G GYL  ++  L+      TG+   E ++  A E    +  +
Sbjct: 17  VWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYD 73

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 442 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTN 495
              + +   +++ G G GYL  ++  L+      TG+   E ++  A E    +  +
Sbjct: 17  VWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYD 73

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 59.9 bits (145), Expect = 4e-10
 Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 20/118 (16%)

Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
                GAKVL+ G G G QT + A    P  ++  ++  PE +E +  N  K        
Sbjct: 33  TVYPPGAKVLEAGCGIGAQTVILAKN-NPDAEITSIDISPESLEKARENTEKNGIK---- 87

Query: 189 GRVRIVEADAREGYLPEAPYDVIYYGGCVSEV------PSRVLNQ----LKKGGRILA 236
             V+ ++A+       ++ +D I+    V  V      P   L      LK GG I  
Sbjct: 88  -NVKFLQANIFSLPFEDSSFDHIF----VCFVLEHLQSPEEALKSLKKVLKPGGTITV 140

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 49.5 bits (118), Expect = 8e-07
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 9/95 (9%)

Query: 337 TRDKYGRLVHGSAPDNGPSSERSIAHILDLCY--LNLHRGAKVLEIGSGSGYLATLMAHL 394
           +  +Y   VHG +             +  L +       GAKVLE G G G    ++A  
Sbjct: 2   SLTEY---VHGYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKN 58

Query: 395 VGPTGHVTGL---EHMMDIAIESIANISTNHIDLI 426
             P   +T +      ++ A E+       ++  +
Sbjct: 59  -NPDAEITSIDISPESLEKARENTEKNGIKNVKFL 92

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDL 499
                GAKVLE G G G    ++A    P   +T +      ++ A E+       ++  
Sbjct: 33  TVYPPGAKVLEAGCGIGAQTVILAKN-NPDAEITSIDISPESLEKARENTEKNGIKNVKF 91

Query: 500 I 500
           +
Sbjct: 92  L 92

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275

 Score = 59.7 bits (144), Expect = 4e-10
 Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 4/122 (3%)

Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
           +  L  G  +L++G GSG  +    + +   G +  VE   + ++ ++ N+     +  D
Sbjct: 105 RCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNL----SEFYD 160

Query: 188 SGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKL 247
            G VR   +D  +    +    VI           ++ + +K G      +   D  +K 
Sbjct: 161 IGNVRTSRSDIADFISDQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKT 220

Query: 248 TQ 249
             
Sbjct: 221 VL 222

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275

 Score = 48.9 bits (116), Expect = 1e-06
 Identities = 16/99 (16%), Positives = 42/99 (42%), Gaps = 7/99 (7%)

Query: 360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIA 416
            ++I+      L  G  +LE+G GSG +++ + + +   G +T +E     +  A+++++
Sbjct: 99  ASYIIM--RCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLS 156

Query: 417 NI--STNHIDLIANETIEIIPHILDLCYLNLHRGAKVLE 453
                 N     ++    I   + D    ++      ++
Sbjct: 157 EFYDIGNVRTSRSDIADFISDQMYDAVIADIPDPWNHVQ 195

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275

 Score = 47.0 bits (111), Expect = 6e-06
 Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 9/69 (13%)

Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIA------ 490
           +    L  G  +LE+G GSG +++ + + +   G +T +E     +  A+++++      
Sbjct: 103 IMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIG 162

Query: 491 NISTNHIDL 499
           N+ T+  D+
Sbjct: 163 NVRTSRSDI 171

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280

 Score = 59.8 bits (144), Expect = 5e-10
 Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 3/117 (2%)

Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI 193
           GA+VL+ G+GSG  T      VGP G+VI  E   +  E + RN+S       D    R+
Sbjct: 100 GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPD--NWRL 157

Query: 194 VEADAREGYLPEAPYDVIYYG-GCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQ 249
           V +D  +  LP+   D          EV   V   L  GG ++  +  +    ++ +
Sbjct: 158 VVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVE 214

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 366 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIA 416
           +   ++  GA+VLE G+GSG L   +   VGP G V   E      + A  +++
Sbjct: 92  VHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVS 145

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIA 490
           +   ++  GA+VLE G+GSG L   +   VGP G V   E      + A  +++
Sbjct: 92  VHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVS 145

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 58.7 bits (142), Expect = 7e-10
 Identities = 39/190 (20%), Positives = 75/190 (39%), Gaps = 14/190 (7%)

Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
           A +   +L + + + D+G G+G QT V A  V   G+V G++ +   I+   RN  +   
Sbjct: 37  ALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGL 94

Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVP-SRVLNQ----LKKGGRILAPI 238
                 RV  +     +        D+I+  G +  +   R LN+    LKKGG +    
Sbjct: 95  ----QNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSE 150

Query: 239 GPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQM--DPVDENLFTLM 296
                 ++  +I+ F  +   + D       A + KA  + +  F +  +   ++ FT  
Sbjct: 151 CSWFTDERPAEINDFWMDAYPEIDTIP-NQVAKIHKAGYLPVATFILPENCWTDHYFTPK 209

Query: 297 DKDSDELFSE 306
                   ++
Sbjct: 210 VAAQKIFLTK 219

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 9/90 (10%)

Query: 334 EITTRDKYGRL---VHGSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATL 390
             T  D    L      +    GP S       L     NL   + + +IG G+G    +
Sbjct: 5   NKTIHDFELNLICDFFSNMERQGPGSPEVTLKALSFI-DNLTEKSLIADIGCGTGGQTMV 63

Query: 391 MAHLVGPTGHVTGL---EHMMDIAIESIAN 417
           +A  V   G VTGL      +DI   +   
Sbjct: 64  LAGHVT--GQVTGLDFLSGFIDIFNRNARQ 91

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIAN 491
           NL   + + +IG G+G    ++A  V   G VTGL      +DI   +   
Sbjct: 43  NLTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQ 91

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 57.4 bits (138), Expect = 1e-09
 Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 24/146 (16%)

Query: 110 YAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPE 169
           +A V++ P+        L   L    +VL+ G G G     F        +    +  PE
Sbjct: 25  WARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPE 81

Query: 170 LIEASLRNISKGNKDLLDSGRVRIVEADAREG--YLPEAPYDVIY----YGGCVSEVPSR 223
           L++ +  N          +    + E + +        AP+ +I         +  +P  
Sbjct: 82  LLKLARAN----------APHADVYEWNGKGELPAGLGAPFGLIVSRRGPTSVILRLP-E 130

Query: 224 VLNQLKKGGRILAPIGPMDDFQKLTQ 249
           +          L   GP  +  ++ +
Sbjct: 131 L---AAPDAHFLYV-GPRLNVPEVPE 152

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 40.0 bits (93), Expect = 9e-04
 Identities = 16/125 (12%), Positives = 29/125 (23%), Gaps = 19/125 (15%)

Query: 371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDLIA 427
           L    +VLE G G G  A                     ++ +A  +  +      +   
Sbjct: 46  LTPQTRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPELLKLARANAPHADVYEWNGKG 102

Query: 428 NETIE--------IIPHILDLCYLNLHR----GAKVLEIGSGSGYLATLMAHLVGPTGHV 475
                        +         L L       A  L +G     +  +   L      +
Sbjct: 103 ELPAGLGAPFGLIVSRRGPTSVILRLPELAAPDAHFLYVG-PRLNVPEVPERLAAVGWDI 161

Query: 476 TGLEH 480
              +H
Sbjct: 162 VAEDH 166

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 56.7 bits (137), Expect = 4e-09
 Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 20/141 (14%)

Query: 108 LGYAGVMNAPNQIADAAENL------KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKV 161
            GY     A   + DA + L       L +  G +VLD+G G G      A       +V
Sbjct: 30  FGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARD--VRV 87

Query: 162 IGVEHIPELIE-ASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEV 220
            G+      +  A+ R  + G  +     RV    ADA +    +A +D ++    +  +
Sbjct: 88  TGISISRPQVNQANARATAAGLAN-----RVTFSYADAMDLPFEDASFDAVWALESLHHM 142

Query: 221 PSR--VLNQ----LKKGGRIL 235
           P R   L +    L+ GG + 
Sbjct: 143 PDRGRALREMARVLRPGGTVA 163

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 18/93 (19%)

Query: 341 YGRLVHGSAPDN-GPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTG 399
           +G      A  +   +++R    ++ L  L++  G +VL++G G G  A  +A       
Sbjct: 30  FGYWEDAGADVSVDDATDRLTDEMIAL--LDVRSGDRVLDVGCGIGKPAVRLATARD--V 85

Query: 400 HVTGLEHMMDIAIESIANISTNHIDLIANETIE 432
            VTG+            +IS   ++  AN    
Sbjct: 86  RVTGI------------SISRPQVN-QANARAT 105

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 55.6 bits (134), Expect = 5e-09
 Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 12/110 (10%)

Query: 132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRV 191
           +     +D+GSG G  +   A        +  ++    + E +L+NI+  N     + R+
Sbjct: 42  ITAGTCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALKNIADANL----NDRI 95

Query: 192 RIVEADAREGYLPEAPYDVIYYGGCVSEVP--SRVLNQ----LKKGGRIL 235
           +IV+ D     + +   D+I   G V      +    +    LK GG+  
Sbjct: 96  QIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTY 145

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIAN 417
                ++IGSG G L+  +A        +  L   +HM +IA+++IA+
Sbjct: 43  TAGTCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALKNIAD 88

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 447 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIAN 491
                ++IGSG G L+  +A        +  L   +HM +IA+++IA+
Sbjct: 43  TAGTCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALKNIAD 88

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 55.9 bits (135), Expect = 6e-09
 Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 13/114 (11%)

Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
            L +  G ++LDLGSGSG   C +A   G      G++        + R      ++L  
Sbjct: 31  VLRMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRA----EELGV 84

Query: 188 SGRVRIVEADAREGYLPEAPYDVI------YYGGCVSEVPSRVLNQLKKGGRIL 235
           S RV  +  DA   Y+     DV       +  G  +     +   LK GG +L
Sbjct: 85  SERVHFIHNDAAG-YVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIML 137

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 338 RDKYGRLVHGSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGP 397
             +   +       + P +E   A +  +  L +  G ++L++GSGSG +    A   G 
Sbjct: 3   IPRIFTISESEHRIHNPFTEEKYATLGRV--LRMKPGTRILDLGSGSGEMLCTWARDHG- 59

Query: 398 TGHVTGL---EHMMDIAIESIA 416
               TG+         A     
Sbjct: 60  -ITGTGIDMSSLFTAQAKRRAE 80

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183

 Score = 54.1 bits (131), Expect = 8e-09
 Identities = 27/137 (19%), Positives = 57/137 (41%), Gaps = 9/137 (6%)

Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
           KL+L     V+D+G GSG  T   A        V  ++++   IE + +N++K      +
Sbjct: 30  KLNLNKDDVVVDVGCGSGGMTVEIAKRC---KFVYAIDYLDGAIEVTKQNLAK-----FN 81

Query: 188 SGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKL 247
               +I++  A +  L +  ++  + GG  +      +   KK   I+A    +++  K+
Sbjct: 82  IKNCQIIKGRAEDV-LDKLEFNKAFIGGTKNIEKIIEILDKKKINHIVANTIVLENAAKI 140

Query: 248 TQIDRFHDNTLQKTDLF 264
                     +   ++F
Sbjct: 141 INEFESRGYNVDAVNVF 157

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 55.1 bits (132), Expect = 1e-08
 Identities = 27/218 (12%), Positives = 61/218 (27%), Gaps = 16/218 (7%)

Query: 117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLR 176
           P+         + H  +   ++D+G G G  T   A  + P  ++IG +    +I+ +  
Sbjct: 22  PSDFYKMI--DEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEV 79

Query: 177 NISKGNKDLLDSGRVRIVEADA------REGYLPEAPYDVIYYGGC-----VSEVPSRVL 225
                         V    + +          + +   D+I    C       +      
Sbjct: 80  IKEGSPDTY---KNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAY 136

Query: 226 NQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQM 285
             L+K G I         F    + D                ++   R  L+  +    +
Sbjct: 137 ANLRKDGTIAIWGYADPIFPDYPEFDDLMIEVPYGKQGLGPYWEQPGRSRLRNMLKDSHL 196

Query: 286 DPVDENLFTLMDKDSDELFSERVWELKQDPLYTTEKWI 323
           DP   +   +    ++++  +              K +
Sbjct: 197 DPELFHDIQVSYFCAEDVRDKVKLHQHTKKPLLIRKQV 234

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 20/127 (15%)

Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
           L+   G  +LDLG G+G  T   A       +V+G ++   +IE + +N           
Sbjct: 53  LNPQPGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIEKARQN----------Y 99

Query: 189 GRVRIVEADAREGYLPEAPYDVIYYGGCVSEVP------SRVLNQLKKGGRILAPIGPMD 242
             +    ADAR  +  + P D ++    +  V       + +   LK GGR +A  G   
Sbjct: 100 PHLHFDVADARN-FRVDKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKG 158

Query: 243 DFQKLTQ 249
           + + + +
Sbjct: 159 NIKYILE 165

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 53.0 bits (127), Expect = 4e-08
 Identities = 29/190 (15%), Positives = 63/190 (33%), Gaps = 19/190 (10%)

Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
               + ++   A+VLD+G G GY T   +       K +GV+    +I+         + 
Sbjct: 44  IPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTG---YKAVGVDISEVMIQKGKERGEGPD- 99

Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVIY--YGGCVSEVPSRVLNQ----LKKGGRILAP 237
                  +  ++ D          ++ I        +E P R LN+    LK  G     
Sbjct: 100 -------LSFIKGDLSSLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIA 152

Query: 238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKA--LQMDIHKFQMDPVDENLFTL 295
           I       +     R +   +    +    ++ ++++     +D        V+E +   
Sbjct: 153 ILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGVYKRGVNEKMLGQ 212

Query: 296 MDKDSDELFS 305
           +  D  +  +
Sbjct: 213 LSTDLQQSLT 222

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233

 Score = 52.8 bits (126), Expect = 5e-08
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 14/118 (11%)

Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
           +L + +G ++L LG  SG      + ++GP G++ GVE  P ++   L  + +  +    
Sbjct: 72  ELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMR-DLLTVVRDRR---- 126

Query: 188 SGRVRIVEADAR--EGYLPEAPY-DVIYYGGCVSEVPSRVLNQ----LKKGGRILAPI 238
              +  +  DAR  E Y       D +Y      E  + V+      L+ GG +L  I
Sbjct: 127 --NIFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMAI 182

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH---MMDIAIESIANISTNHID 424
            L +  G ++L +G  SG  A+ M+ ++GP G + G+E    +M   +  +     N   
Sbjct: 72  ELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLT-VVRDRRNIFP 130

Query: 425 LIANET 430
           ++ +  
Sbjct: 131 ILGDAR 136

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 442 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH---MMDIAIESIANISTNHID 498
            L +  G ++L +G  SG  A+ M+ ++GP G + G+E    +M   +  +     N   
Sbjct: 72  ELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLT-VVRDRRNIFP 130

Query: 499 LIANET 504
           ++ +  
Sbjct: 131 ILGDAR 136

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 22/166 (13%), Positives = 54/166 (32%), Gaps = 37/166 (22%)

Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
            +       ++D G G+G+             K+  ++     ++               
Sbjct: 12  NIFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKFD-------- 60

Query: 188 SGRVRIVEADAREGYLPEAPYDVIYYGGCVSEV--PSRVLNQ----LKKGGRIL------ 235
                I  +D +E  +P+   D I +     ++     V+++    LK  GR++      
Sbjct: 61  ---SVITLSDPKE--IPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRK 115

Query: 236 --APIGP-----MDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRK 274
               IGP     MD+   +     F     ++ +     +  ++++
Sbjct: 116 ENTGIGPPLSIRMDEKDYMGWFSNFV--VEKRFNPTPYHFGLVLKR 159

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 5/56 (8%), Positives = 18/56 (32%), Gaps = 6/56 (10%)

Query: 366 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANI 418
           L  +   +   +++ G G+G+    +         +  +      +    E   ++
Sbjct: 10  LPNIFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKFDSV 62

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 5/56 (8%), Positives = 18/56 (32%), Gaps = 6/56 (10%)

Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANI 492
           L  +   +   +++ G G+G+    +         +  +      +    E   ++
Sbjct: 10  LPNIFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKFDSV 62

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410

 Score = 52.1 bits (124), Expect = 2e-07
 Identities = 32/135 (23%), Positives = 44/135 (32%), Gaps = 25/135 (18%)

Query: 130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG 189
            + +G KV+DL  G G              + I +E   E   A+  NI      L +  
Sbjct: 90  FIREGTKVVDLTGGLGIDFIALMSKA---SQGIYIERNDETAVAARHNIPLL---LNEGK 143

Query: 190 RVRIVEADAREGYLPEAP---YDVIY---------------YGGCVSEVPSRVLNQLKKG 231
            V I+  D +E YLP       D IY                  C  ++       L   
Sbjct: 144 DVNILTGDFKE-YLPLIKTFHPDYIYVDPARRSGADKRVYAIADCEPDLIPLATELLPFC 202

Query: 232 GRILAPIGPMDDFQK 246
             ILA + PM D   
Sbjct: 203 SSILAKLSPMIDLWD 217

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 22/134 (16%), Positives = 45/134 (33%), Gaps = 17/134 (12%)

Query: 119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNI 178
           +I      L  ++    KVLDL  G G  + +         +V+GV+   ++I  +    
Sbjct: 24  RIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYA 80

Query: 179 SKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVP--------SRVLNQLKK 230
                +      V  +  DAR+    +  +D + +   +              V   LK 
Sbjct: 81  KSRESN------VEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKP 134

Query: 231 GGRILAPIGPMDDF 244
            G+ +     + + 
Sbjct: 135 SGKFIMYFTDLREL 148

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 411 AIESIANISTNHIDLIANETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVG 470
             +    +   + D+ + E    I  +  L    + +  KVL++  G G  + L+     
Sbjct: 2   GFKEYYRVFPTYTDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG- 60

Query: 471 PTGHVTGL---EHMMDIAIE 487
               V G+   E M+  A E
Sbjct: 61  --FEVVGVDISEDMIRKARE 78

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 6/65 (9%)

Query: 352 NGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMM 408
           N       I  +  L    + +  KVL++  G G  + L+         V G+   E M+
Sbjct: 17  NSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMI 73

Query: 409 DIAIE 413
             A E
Sbjct: 74  RKARE 78

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 22/116 (18%), Positives = 33/116 (28%), Gaps = 14/116 (12%)

Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIE-ASLRNISKGNKDL 185
           +   L   AK LDLG+G G          G    +  +   P   +     N   G  D 
Sbjct: 76  MTGVLQRQAKGLDLGAGYGGAARFLVRKFGV--SIDCLNIAPVQNKRNEEYNNQAGLAD- 132

Query: 186 LDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSR------VLNQLKKGGRIL 235
                + +      E    +  YD I+        P +          LK  G + 
Sbjct: 133 ----NITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMA 184

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 50.2 bits (120), Expect = 4e-07
 Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 25/120 (20%)

Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
            + L + +KVLD+GSG G          G      G++    ++  +   +S  N     
Sbjct: 50  DIELNENSKVLDIGSGLGGGCMYINEKYGA--HTHGIDICSNIVNMANERVSGNN----- 102

Query: 188 SGRVRIVEADAREGYLPEAPYDVIY------------YGGCVSEVPSRVLNQLKKGGRIL 235
             ++     D      PE  +D+IY                  +   +    LK  G +L
Sbjct: 103 --KIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKC-YKW---LKPTGTLL 156

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 50.3 bits (120), Expect = 5e-07
 Identities = 35/171 (20%), Positives = 68/171 (39%), Gaps = 21/171 (12%)

Query: 76  GKIRTERVAQAFYKV-DRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDG 134
           G +RT         V +RG     + Y + +A   Y  ++   +  ++A E         
Sbjct: 27  GPVRTPHADVLLASVGERGVLC--DFYDEGAADT-YRDLIQDADGTSEAREFATRTGPVS 83

Query: 135 AKVLDLGSGSGYQTCVFAHMVGPTG-KVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI 193
             VL+L +G G  T  F  +    G +V  +E    ++ A  + +++   D+ D  R  +
Sbjct: 84  GPVLELAAGMGRLTFPFLDL----GWEVTALELSTSVLAAFRKRLAEAPADVRD--RCTL 137

Query: 194 VEADAREGYLPEAPYDVIY-YGGCVSEVP--------SRVLNQLKKGGRIL 235
           V+ D     L +  +  +    G ++E+         + V   L+ GG+ L
Sbjct: 138 VQGDMSAFALDK-RFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFL 187

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292

 Score = 50.3 bits (119), Expect = 6e-07
 Identities = 33/174 (18%), Positives = 57/174 (32%), Gaps = 11/174 (6%)

Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLL 186
           LK     G  VLDLG   G+ T   A   GP+ +++G++    LI ++ +NI     + L
Sbjct: 40  LKPEWFRGRDVLDLGCNVGHLTLSIACKWGPS-RMVGLDIDSRLIHSARQNIRHYLSEEL 98

Query: 187 DSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQK 246
                 +      EG                   P+ +            P+   D    
Sbjct: 99  RLPPQTLEGDPGAEGEEGTTTVRKRSC------FPASLTASRGPIAAPQVPLDGADTSVF 152

Query: 247 LTQIDRFHDNTLQKTDLFEVA----YDAIMRKALQMDIHKFQMDPVDENLFTLM 296
              +     N +   D    A    YD ++  +L   +H    D   + +F  +
Sbjct: 153 PNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRI 206

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 6e-07
 Identities = 61/430 (14%), Positives = 127/430 (29%), Gaps = 125/430 (29%)

Query: 24  TEGDIQNEDDFCRK-DMDEFPEGHWVIPPPDNLN--------HFKNEGTCQTDLVNHLRD 74
            E  ++       + D +              ++          K++      LV  L +
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--LLN 252

Query: 75  IGKIRTERVAQAFY---KV-----DRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAEN 126
           +   +  +   AF    K+      +           +SA+      ++  +      E 
Sbjct: 253 V---QNAKAWNAFNLSCKILLTTRFKQVT------DFLSAATTTHISLDHHSMTLTPDEV 303

Query: 127 LKLHLVDGAKVLDLG---------SGSGYQTCVFAHMV--GPTG----KVIGVEHIPELI 171
             L L    K LD           + +  +  + A  +  G       K +  + +  +I
Sbjct: 304 KSL-L---LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 172 EASLRNISKGNKDLLDSGRVRIVEADAREGY-----LPEA---PYDV--IYYGGCVSEVP 221
           E+SL        ++L+        A+ R+ +      P +   P  +  + +   +    
Sbjct: 360 ESSL--------NVLEP-------AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 222 SRVLNQLKKGGRILAPIGP-----------MDDFQKLTQIDRFHDNTLQKTDLFEVAYDA 270
             V+N+L K    L    P           ++   KL      H + +         Y+ 
Sbjct: 405 MVVVNKLHK--YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH-------YN- 454

Query: 271 IMRKALQMDIHKFQMDPVDENLFT-----LMDKDSDELFSERVWELKQDPLYTTEKWIPQ 325
           I +     D        +D+  ++     L + +  E  +      +   ++   +++ Q
Sbjct: 455 IPKT---FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL----FRM--VFLDFRFLEQ 505

Query: 326 -----PPGYTTPGEI--TTRD--KYGRLVHGSAPDNGPSSERSIAHILDL---CYLNLHR 373
                   +   G I  T +    Y   +     DN P  ER +  ILD       NL  
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYIC----DNDPKYERLVNAILDFLPKIEENLIC 561

Query: 374 G--AKVLEIG 381
                +L I 
Sbjct: 562 SKYTDLLRIA 571

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 9e-05
 Identities = 83/619 (13%), Positives = 171/619 (27%), Gaps = 179/619 (28%)

Query: 21  QVYTEGDI--QNEDDFCR----KDMDEFPEGHWVIPPPDNLNHFKNEGT--CQTDLVNHL 72
             Y   DI    ED F      KD+ + P+   ++   + ++H          T     L
Sbjct: 14  HQYQYKDILSVFEDAFVDNFDCKDVQDMPKS--ILSKEE-IDHIIMSKDAVSGTLR---L 67

Query: 73  RDIGKIRTERVAQAFYK-VDRGNFA---------NEEPYQDVSASLGYAGVMNAPNQI-- 120
                 + E + Q F + V R N+            +P       +     +   NQ+  
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 121 ------ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAH-MVGPTGKVIGVEHIPELIEA 173
                       L+  L      L+L         V    ++G +GK         +   
Sbjct: 128 KYNVSRLQPYLKLRQAL------LELRPAKN----VLIDGVLG-SGKTW-------VALD 169

Query: 174 SLRN-------------ISKGN----KDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGC 216
              +             ++  N    + +L+  +  + + D       +   ++      
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 217 VSEVPSRVLNQLKKGGR---ILAPIGPMDDFQKLTQIDRFHDN---TLQKTDLFEVAYDA 270
           +     R+L + K       +L       + Q     + F +     L  T   +V  D 
Sbjct: 230 IQAELRRLL-KSKPYENCLLVL------LNVQNAKAWNAF-NLSCKILLTTRFKQVT-DF 280

Query: 271 IMRKALQMDIHKFQMDPVDENLFTLMDKDSDELFSERV---------------------- 308
           +                +D +  TL   +   L  + +                      
Sbjct: 281 L-------SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333

Query: 309 WELKQDPLYTTEKW-----------IPQPPGYTTPGEITTRDKYGRLVHGSA--PDN--- 352
            E  +D L T + W           I        P E   R  + RL    +  P +   
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY--RKMFDRL----SVFPPSAHI 387

Query: 353 ---------GPSSERSIAHILDLC--YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHV 401
                        +  +  +++    Y  + +  K   I   S YL   +        H 
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447

Query: 402 TGLEH--------MMDIAIESIANISTNHI-----DLIANETIEIIPHILDLCYLNLH-R 447
           + ++H          D+    +     +HI     ++   E + +   +    +L+    
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV----FLDFRFL 503

Query: 448 GAKVLEIGS---GSGYLATLMAHLVGPTGHVT----GLEHMMDIAIESIANISTN----- 495
             K+    +    SG +   +  L     ++       E +++  ++ +  I  N     
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563

Query: 496 HIDLI----ANETIEIIRE 510
           + DL+      E   I  E
Sbjct: 564 YTDLLRIALMAEDEAIFEE 582

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 21/126 (16%), Positives = 46/126 (36%), Gaps = 17/126 (13%)

Query: 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
           +     + ++     +   +LDLG+G+G  +        P      V+   +++E     
Sbjct: 29  DDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLE----- 82

Query: 178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVP--------SRVLNQLK 229
                     + +V+ +EAD  + Y  E  YD++     +  +          R  + LK
Sbjct: 83  --IAKNRFRGNLKVKYIEADYSK-YDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILK 139

Query: 230 KGGRIL 235
           + G  +
Sbjct: 140 ESGIFI 145

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 23/128 (17%)

Query: 117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIE-ASL 175
            +  A AA            VL+L SG+GY T   + +     +V  ++   E+I  A  
Sbjct: 30  MDSAAPAALERLRAGNIRGDVLELASGTGYWTRHLSGLA---DRVTALDGSAEMIAEAGR 86

Query: 176 RNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVP--------SRVLNQ 227
             +            V   + D  + + P+  +D +++   ++ VP          V + 
Sbjct: 87  HGLD----------NVEFRQQDLFD-WTPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSA 135

Query: 228 LKKGGRIL 235
           +  GG + 
Sbjct: 136 VAPGGVVE 143

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 12/84 (14%)

Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
           + L       DLG G G  T +          + G++   +++E +              
Sbjct: 29  VPLERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADR----------L 77

Query: 189 GRVRIVEADAREGYLPEAPYDVIY 212
                 +AD    + P    D++Y
Sbjct: 78  PNTNFGKADLAT-WKPAQKADLLY 100

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI 193
             ++ DLG+G+G      A  +    +V   E   E+ E + R++   +     S R+ +
Sbjct: 37  ACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAF-SARIEV 94

Query: 194 VEADARE-------GYLPEAPYDVI 211
           +EAD            LP+  +  +
Sbjct: 95  LEADVTLRAKARVEAGLPDEHFHHV 119

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 22/141 (15%), Positives = 43/141 (30%), Gaps = 25/141 (17%)

Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI 193
              VLD G+G            G   K  G+E     ++ +     + N       ++ I
Sbjct: 24  DKTVLDCGAGGDLPPLSIFVEDG--YKTYGIEISDLQLKKAENFSRENNF------KLNI 75

Query: 194 VEADAREGYLPEAPYDVIY------------YGGCVSEVPSRVLNQLKKGGRILAPIGPM 241
            + D R+    +     +Y                + E+  RV   LK GG         
Sbjct: 76  SKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEI-KRV---LKPGGLACINFLTT 131

Query: 242 DDFQKLTQIDRFHDNTLQKTD 262
            D  +  + ++  +    + +
Sbjct: 132 KDE-RYNKGEKIGEGEFLQLE 151

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 47.2 bits (112), Expect = 4e-06
 Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 21/127 (16%)

Query: 119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNI 178
           QIA A  +      +    L+LG G+G              + I ++    ++E   + I
Sbjct: 25  QIATAMASAVHPKGEEPVFLELGVGTGRIALPLI---ARGYRYIALDADAAMLEVFRQKI 81

Query: 179 SKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVP---------SRVLNQLK 229
           +  +       +V++V+ADAR   LP+     +        VP          RV   LK
Sbjct: 82  AGVD------RKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRV---LK 132

Query: 230 KGGRILA 236
            GG +L 
Sbjct: 133 PGGALLE 139

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 31/200 (15%), Positives = 60/200 (30%), Gaps = 32/200 (16%)

Query: 125 ENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTG-KVIGVEHIPELIEASLRNISKGNK 183
           E    + +     LDL  G+G  T                V+   E++  +         
Sbjct: 29  EKCVENNLVFDDYLDLACGTGNLTENLCPK----FKNTWAVDLSQEMLSEAENKFRSQGL 84

Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVIYYGGC----------VSEVPSRVLNQLKKGGR 233
                   R+   D     +    +D+I               + +    V N LK+GG 
Sbjct: 85  K------PRLACQDISNLNINR-KFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGV 137

Query: 234 ILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDPVDENLF 293
            +  I       ++   + F+ +  +    +E  ++      + M I  F     D   +
Sbjct: 138 FIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFED---DLVSMYISFFV---RDGEFY 191

Query: 294 TLMDKDSDELFSERVWELKQ 313
               K  DE   ER ++ + 
Sbjct: 192 ----KRFDEEHEERAYKEED 207

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 46.4 bits (110), Expect = 5e-06
 Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 19/115 (16%)

Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTG-KVIGVEHIPELIEASLRNISKGNKDLLD 187
            + +   K+L L  G G   C  A +    G +V  V       + S   ++K  +   +
Sbjct: 25  ANQIPQGKILCLAEGEGRNACFLASL----GYEVTAV-------DQSSVGLAKAKQLAQE 73

Query: 188 SG-RVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSR------VLNQLKKGGRIL 235
            G ++  V+++  +  +    ++ I    C      R      V   LK GG  +
Sbjct: 74  KGVKITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFI 128

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 46.1 bits (109), Expect = 7e-06
 Identities = 14/101 (13%), Positives = 32/101 (31%), Gaps = 1/101 (0%)

Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
            L   +  +V+DLG G G    +         ++ GV+     +E +   + +       
Sbjct: 24  ALKQSNARRVIDLGCGQGNLLKILLKD-SFFEQITGVDVSYRSLEIAQERLDRLRLPRNQ 82

Query: 188 SGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQL 228
             R+++++            YD       +  +    L   
Sbjct: 83  WERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAF 123

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225

 Score = 46.0 bits (109), Expect = 8e-06
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 10/119 (8%)

Query: 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVR 192
            GA +LD+GS   Y         G     I  E +    +++++N+           +++
Sbjct: 15  QGAILLDVGSDHAYLPI-ELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGL----KEKIQ 69

Query: 193 IVEADAREGYLPEAPYDVIYYGG----CVSEVPSRVLNQLKKGGR-ILAPIGPMDDFQK 246
           +  A+    +       VI   G     ++ +    L +L    R IL P    DD + 
Sbjct: 70  VRLANGLAAFEETDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQPNNREDDLRI 128

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 46.2 bits (109), Expect = 9e-06
 Identities = 25/154 (16%), Positives = 48/154 (31%), Gaps = 12/154 (7%)

Query: 85  QAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGS 144
           + +Y      +    P   VS  LG    ++  +          L     ++ LD G+G 
Sbjct: 47  KGWYG-KALEYWRTVP-ATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGI 104

Query: 145 GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLP 204
           G  T      +        +E +  ++E +        ++L      + + A      LP
Sbjct: 105 GRITKNLLTKLY--ATTDLLEPVKHMLEEA-------KRELAGMPVGKFILASMETATLP 155

Query: 205 EAPYDVIYYGGCVSEVPSRVLNQ-LKKGGRILAP 237
              YD+I        +      +  K   + L P
Sbjct: 156 PNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTP 189

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 22/157 (14%), Positives = 46/157 (29%), Gaps = 44/157 (28%)

Query: 136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195
            V+  G G G  +  FA  +  + +V+ ++   + +E + R +           RV +  
Sbjct: 59  LVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLI----DRVELQV 114

Query: 196 ADAREGYLPEAPYDVI-----------YYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDF 244
            D       +   D++                      R+   L K   ++A        
Sbjct: 115 GDPLGIAAGQRDIDILFMDCDVFNGADVL--------ERMNRCLAKNALLIA-------- 158

Query: 245 QKLTQIDRFHDNTLQKTDLFEVAYDAI---MRKALQM 278
                      N L++  + E   D     +R+    
Sbjct: 159 ----------VNALRRGSVAESHEDPETAALREFNHH 185

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 9/65 (13%), Positives = 24/65 (36%), Gaps = 6/65 (9%)

Query: 376 KVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESI--ANISTNHIDLIANET 430
            V+  G G G  +   A  +  +  V  ++     ++ A   +    +  + ++L   + 
Sbjct: 59  LVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLI-DRVELQVGDP 117

Query: 431 IEIIP 435
           + I  
Sbjct: 118 LGIAA 122

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score = 40.2 bits (95), Expect = 7e-04
 Identities = 9/70 (12%), Positives = 23/70 (32%), Gaps = 9/70 (12%)

Query: 450 KVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESI--ANISTNHIDLI---A 501
            V+  G G G  +   A  +  +  V  ++     ++ A   +    +  + ++L     
Sbjct: 59  LVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLI-DRVELQVGDP 117

Query: 502 NETIEIIREF 511
                  R+ 
Sbjct: 118 LGIAAGQRDI 127

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 30/137 (21%), Positives = 46/137 (33%), Gaps = 24/137 (17%)

Query: 110 YAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTG-KVIGVEHIP 168
           +  +  A N I   A  +      GAK+LD G G G      +      G  V+G +  P
Sbjct: 23  WRNLAAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIGGYLSKQ----GHDVLGTDLDP 78

Query: 169 ELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCV-----SEVPSR 223
            LI+ + ++              R V  D     + E  +D+I   G V      +    
Sbjct: 79  ILIDYAKQDFP----------EARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREP 128

Query: 224 VLNQ----LKKGGRILA 236
            L      L   GR + 
Sbjct: 129 ALANIHRALGADGRAVI 145

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 32/198 (16%), Positives = 65/198 (32%), Gaps = 41/198 (20%)

Query: 98  EEPYQDVSASLGYAGVMNAPNQIADAAEN-LKLHL---VDGAKVLDLGSGSGYQTCVFAH 153
           +  Y       GY+ +  +   +  AAE      +   V G +++DLG G G+       
Sbjct: 4   QNIYDQPDFFAGYSQLGRSIEGLDGAAEWPALRAMLPEVGGLRIVDLGCGFGWFCRWAHE 63

Query: 154 MVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY- 212
                  V+G++   +++  +        +       +    AD  + +LP+  +D+ Y 
Sbjct: 64  H--GASYVLGLDLSEKMLARA--------RAAGPDTGITYERADLDKLHLPQDSFDLAYS 113

Query: 213 ---------YGGCVSEVPSRVLNQLKKGGR-ILAPIGPM------------DDFQKLTQI 250
                           V  +    L  GG  + +   P+             + ++   I
Sbjct: 114 SLALHYVEDVARLFRTV-HQA---LSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPI 169

Query: 251 DRFHDNTLQKTDLFEVAY 268
           DR+     +KTD      
Sbjct: 170 DRYLVEGPRKTDWLAKGV 187

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 8/80 (10%), Positives = 28/80 (35%), Gaps = 6/80 (7%)

Query: 366 LCYLNLHRGAK-VLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESI--ANIS 419
           L       G+   + I   +G +   + + +     +T ++        A      A  S
Sbjct: 48  LAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYS 107

Query: 420 TNHIDLIANETIEIIPHILD 439
            + +  + +  ++++  + +
Sbjct: 108 PSRVRFLLSRPLDVMSRLAN 127

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 12/119 (10%), Positives = 34/119 (28%), Gaps = 17/119 (14%)

Query: 128 KLHLVDGAK-VLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLL 186
                +G+   + +   +G       + +     +  ++   E    +     +      
Sbjct: 50  ATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG---Y 106

Query: 187 DSGRVRIVEADARE--GYLPEAPYDVIY-------YGGCVSEVPSRVLNQLKKGGRILA 236
              RVR + +   +    L    Y +++           V          L++GG ++ 
Sbjct: 107 SPSRVRFLLSRPLDVMSRLANDSYQLVFGQVSPMDLKALVDA----AWPLLRRGGALVL 161

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 8/78 (10%), Positives = 26/78 (33%), Gaps = 6/78 (7%)

Query: 440 LCYLNLHRGAK-VLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESI--ANIS 493
           L       G+   + I   +G +   + + +     +T ++        A      A  S
Sbjct: 48  LAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYS 107

Query: 494 TNHIDLIANETIEIIREF 511
            + +  + +  ++++   
Sbjct: 108 PSRVRFLLSRPLDVMSRL 125

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 17/80 (21%), Positives = 38/80 (47%), Gaps = 8/80 (10%)

Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI 193
             K++DL SG+G    + +       K++GVE    L + + R+++          ++ I
Sbjct: 50  KGKIIDLCSGNGIIPLLLSTR--TKAKIVGVEIQERLADMAKRSVAYNQL----EDQIEI 103

Query: 194 VEADARE--GYLPEAPYDVI 211
           +E D ++    +P+   D++
Sbjct: 104 IEYDLKKITDLIPKERADIV 123

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} PDB: 3id5_B* 3pla_E* Length = 232

 Score = 44.3 bits (104), Expect = 4e-05
 Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 14/117 (11%)

Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
             +  G KVL LG+ SG      + ++   GK  GVE  P ++   L  +++   ++   
Sbjct: 72  NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVR-ELLLVAQRRPNI--- 127

Query: 189 GRVRIVEADAR--EGYLPEAP-YDVIYYGGCVSEVPSRVLNQ----LKKGGRILAPI 238
               ++  DAR  + Y       DV+Y      +     +      LK  G +L  I
Sbjct: 128 --FPLLA-DARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVI 181

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 19/146 (13%), Positives = 41/146 (28%), Gaps = 25/146 (17%)

Query: 101 YQDVSASLGYAGVMNAPNQIADAAENLKLHLVD--GAKVLDLGSGSGYQTCVFAHMVGPT 158
           Y   +       ++       D    L           +LD+GSG+G  T    H+    
Sbjct: 9   YSSPTFD--AEALLGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWT---GHLASLG 63

Query: 159 GKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVS 218
            ++ G+E    L+E + +              V        +       +  +     + 
Sbjct: 64  HQIEGLEPATRLVELARQT----------HPSVTFHHGTITDLSDSPKRWAGLLAWYSLI 113

Query: 219 EVP--------SRVLNQLKKGGRILA 236
            +           +   ++ GG +L 
Sbjct: 114 HMGPGELPDALVALRMAVEDGGGLLM 139

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 21/132 (15%)

Query: 114 MNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTG-KVIGVEHIPELIE 172
           +       +    +   +  G ++ D+G G+G  T + A        +V GV+   E++E
Sbjct: 14  LMQDVPYPEWVAWVLEQVEPGKRIADIGCGTGTATLLLAD-----HYEVTGVDLSEEMLE 68

Query: 173 ASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPS---------R 223
            +     + N+       V     D RE  LPE    +      ++ + +          
Sbjct: 69  IAQEKAMETNRH------VDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDS 122

Query: 224 VLNQLKKGGRIL 235
               L  GG++L
Sbjct: 123 AARLLTDGGKLL 134

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 43.8 bits (103), Expect = 5e-05
 Identities = 17/115 (14%), Positives = 40/115 (34%), Gaps = 8/115 (6%)

Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
            L  V+  KV+DLG G G    +         ++ GV+    ++E +   +       + 
Sbjct: 24  VLKSVNAKKVIDLGCGEGNLLSLLLKD-KSFEQITGVDVSYSVLERAKDRLKIDRLPEMQ 82

Query: 188 SGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPS-------RVLNQLKKGGRIL 235
             R+ + ++         + YD       +  +         +VL +  +   ++
Sbjct: 83  RKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVI 137

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 24/125 (19%)

Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLL 186
           L   L D + V+D   G+G  T   A   G + KV   +   + +  + + +S    +  
Sbjct: 16  LAEVLDDESIVVDATMGNGNDTAFLA---GLSKKVYAFDVQEQALGKTSQRLSDLGIE-- 70

Query: 187 DSGRVRIVEADARE----------------GYLPEAPYDVIYYGGCVSEVPSRVLNQLKK 230
                 ++                      GYLP A   VI       E   ++L++L+ 
Sbjct: 71  ---NTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEV 127

Query: 231 GGRIL 235
           GGR+ 
Sbjct: 128 GGRLA 132

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 18/110 (16%)

Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG--RV 191
             +VLD+G+G+G+    F+  V    + IGV+   E++E         +    + G   V
Sbjct: 22  EHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVE-------VASSFAQEKGVENV 71

Query: 192 RIVEADAREGYLPEAPYDVIY--YGGCVSEVPSRVLNQ----LKKGGRIL 235
           R  +  A     P+  +D+I   Y         + + +    LK+ GR L
Sbjct: 72  RFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFL 121

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDL 425
                  +VL+IG+G+G+ A   +  V       G+   + M+++A          ++  
Sbjct: 17  AECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRF 73

Query: 426 I 426
            
Sbjct: 74  Q 74

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDL 499
                  +VL+IG+G+G+ A   +  V       G+   + M+++A          ++  
Sbjct: 17  AECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRF 73

Query: 500 I 500
            
Sbjct: 74  Q 74

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 29/179 (16%), Positives = 60/179 (33%), Gaps = 26/179 (14%)

Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLL 186
           L+ +L +  +VLDLG G+G  +           +V+ V+   E++E +            
Sbjct: 48  LEEYLKNPCRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLEVAREK--------- 95

Query: 187 DSGRVRIVEADAREGYLPEAPYD-VIYYGGCVSEV--PSRVLNQ----LKKGGRILAPIG 239
             G   +VEA A +   P   ++ V+  G  +S V    +  ++    L   G ++A   
Sbjct: 96  --GVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIA--- 150

Query: 240 PMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDPVDENLFTLMDK 298
                   T + +  +          +              + +   P D +     + 
Sbjct: 151 --TVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSLEGFET 207

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4er3_A* 3sr4_A* Length = 438

 Score = 44.1 bits (103), Expect = 8e-05
 Identities = 31/167 (18%), Positives = 51/167 (30%), Gaps = 17/167 (10%)

Query: 80  TERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLD 139
              + Q  Y     +      Y+  S    Y       + +A   + +K+   D    +D
Sbjct: 125 LRHILQQVYNHSVTDPEKLNNYEPFS-PEVYGETS--FDLVAQMIDEIKMT--DDDLFVD 179

Query: 140 LGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDL----LDSGRVRIVE 195
           LGSG G Q  +            GVE      + +     +  K +           +  
Sbjct: 180 LGSGVG-QVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER 238

Query: 196 ADAREGYLPE--APYDVIY-----YGGCVSEVPSRVLNQLKKGGRIL 235
            D       E  A   VI+     +G  V          +K+GGRI+
Sbjct: 239 GDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIV 285

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} Length = 233

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 14/118 (11%)

Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
           ++H+  GAKVL LG+ SG      + +VGP G V  VE         L N++K   ++  
Sbjct: 72  QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGR-DLINLAKKRTNI-- 128

Query: 188 SGRVRIVEADAR--EGYLPEAP-YDVIYYGGCVSEVPSRVLNQ----LKKGGRILAPI 238
              + ++E DAR    Y       DVI+      +    V       L+ GG  +  I
Sbjct: 129 ---IPVIE-DARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISI 182

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 27/135 (20%)

Query: 110 YAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPE 169
           Y+       +I +A  NL L+L  G+ + D+G+G+G  +   A+       V  VE    
Sbjct: 12  YSQTRVPDIRIVNAIINL-LNLPKGSVIADIGAGTGGYSVALANQG---LFVYAVEPSIV 67

Query: 170 LIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVP-------- 221
           + + ++ +            +V      A    LP+   D +     +            
Sbjct: 68  MRQQAVVH-----------PQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQE 116

Query: 222 -SRVLNQLKKGGRIL 235
             R+   ++ G  +L
Sbjct: 117 MQRI---IRDGTIVL 128

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 12/120 (10%)

Query: 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISK-GNKDLLDSGRV 191
            GA++LD+GS   Y       M G     I  E +    +++L+N+S+ G        ++
Sbjct: 21  KGARLLDVGSDHAYLPIFLLQM-GYCDFAIAGEVVNGPYQSALKNVSEHGLTS-----KI 74

Query: 192 RIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVL----NQLKKGGR-ILAPIGPMDDFQK 246
            +  A+    +      D I   G    + + +L    ++L+     +L P    DD +K
Sbjct: 75  DVRLANGLSAFEEADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVLQPNNREDDLRK 134

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A Length = 227

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 14/117 (11%)

Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
             +  G  VL LG  SG      + +VG  GK+ G+E  P ++   L  I +  +     
Sbjct: 69  FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLR-ELVPIVEERR----- 122

Query: 189 GRVRIVEADAR--EGYLPEAP-YDVIYYGGCVSEVPSRVLNQ----LKKGGRILAPI 238
             +  +  DA   E Y    P  DVI+           +++     LK+GG  +  +
Sbjct: 123 -NIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAV 178

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 15/117 (12%)

Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
           + +   +K+L LG+ +G  T      +   G V  +E+ P ++   L +     ++    
Sbjct: 70  MPIKRDSKILYLGASAGT-TPSHVADIADKGIVYAIEYAPRIMR-ELLDACAEREN---- 123

Query: 189 GRVRIVEADAR--EGYLPEAP-YDVIYYGGCVSEVPSRVLNQ----LKKGGRILAPI 238
             +  +  DA   + Y       DVIY           ++      LKKGG  +  I
Sbjct: 124 --IIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAI 178

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 22/122 (18%), Positives = 36/122 (29%), Gaps = 31/122 (25%)

Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
            +       VL+ G G+G  T            V G+E   E+   +   +         
Sbjct: 40  DVVNKSFGNVLEFGVGTGNLTNKLLLAG---RTVYGIEPSREMRMIAKEKL--------- 87

Query: 188 SGRVRIVEADAREGYLPEAPYDVIYYGGCVS---------EVPSRVLNQ----LKKGGRI 234
                I E D    +      D I     VS         +  +  + +    L KGG+I
Sbjct: 88  PKEFSITEGDFLS-FEVPTSIDTI-----VSTYAFHHLTDDEKNVAIAKYSQLLNKGGKI 141

Query: 235 LA 236
           + 
Sbjct: 142 VF 143

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 26/142 (18%), Positives = 47/142 (33%), Gaps = 34/142 (23%)

Query: 114 MNAPNQIADAAE-NLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIE 172
               ++ A  +E      L+   + +++G G+G           P    IGVE    + E
Sbjct: 27  WFLVHRFAYLSELQAVKCLLPEGRGVEIGVGTG-------RFAVPLKIKIGVEPSERMAE 79

Query: 173 -ASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVP---------S 222
            A  R +              +++  A    L +  +D       +  V           
Sbjct: 80  IARKRGV-------------FVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAY 126

Query: 223 RVLNQLKKGGRILAPIGPMDDF 244
           R+   LKKGG ++  I   + F
Sbjct: 127 RI---LKKGGYLIVGIVDRESF 145

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 28/196 (14%), Positives = 62/196 (31%), Gaps = 27/196 (13%)

Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTG-KVIGVEHIPELIEASLRNISKGNKDLL 186
           +    +  +VLDL  G+G  T   A      G +V+G++   E++  + R   + N    
Sbjct: 36  EDAKREVRRVLDLACGTGIPTLELAER----GYEVVGLDLHEEMLRVARRKAKERNLK-- 89

Query: 187 DSGRVRIVEADAREGYLPEAPYDVIYYGGC---------VSEVPSRVLNQLKKGGRILAP 237
               +  ++ D  E       +D +              + ++ S+V   LK GG  +  
Sbjct: 90  ----IEFLQGDVLEIAFKN-EFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144

Query: 238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDPVDENLFTLMD 297
                   +   +        +K  + +        + L+       + P  E       
Sbjct: 145 FPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQKLRFKRLVQILRPNGE------V 198

Query: 298 KDSDELFSERVWELKQ 313
           K         ++  ++
Sbjct: 199 KAFLVDDELNIYTPRE 214

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 30/119 (25%)

Query: 136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195
           K +++G  +GY   + A  +   GK+  ++   E  E  L  I K   +     ++  +E
Sbjct: 73  KTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVE----HKINFIE 128

Query: 196 ADARE-------GYLPEAPYDVI-----------YYGGCVSEVPSRVLNQLKKGGRILA 236
           +DA         G   E  YD             Y+         R++  +K GG +  
Sbjct: 129 SDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYH--------ERLMKLVKVGGIVAY 179

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 5/101 (4%)

Query: 343 RLVHGSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVT 402
           R  + S PD+  S+      ++    L L    K +E+G  +GY   L A  +   G +T
Sbjct: 41  REANESHPDSYMSTSPLAGQLMSFV-LKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKIT 99

Query: 403 GLE---HMMDIAIESIANISTNH-IDLIANETIEIIPHILD 439
            ++      +I +  I      H I+ I ++ +  + ++L 
Sbjct: 100 AIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQ 140

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 22/114 (19%), Positives = 47/114 (41%), Gaps = 26/114 (22%)

Query: 136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195
            +L++G+  GY +  FA +      V  +E    +I+ + +N++  + +     +VRI+E
Sbjct: 74  NILEIGTAIGYSSMQFASI-SDDIHVTTIERNETMIQYAKQNLATYHFE----NQVRIIE 128

Query: 196 ADARE--GYLPEAPYDVI-----------YYGGCVSEVPSRVLNQLKKGGRILA 236
            +A E    + +  YD+I           ++              LK  G ++ 
Sbjct: 129 GNALEQFENVNDKVYDMIFIDAAKAQSKKFF--------EIYTPLLKHQGLVIT 174

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 26/115 (22%)

Query: 136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195
           ++L++G+  GY T   A  +   G+++ +E      + +  N+     D     RV + E
Sbjct: 66  RILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVD----QRVTLRE 121

Query: 196 ADARE---GYLPEAPYDVI-----------YYGGCVSEVPSRVLNQLKKGGRILA 236
             A +          +D+I           Y            L   + G  I+ 
Sbjct: 122 GPALQSLESLGECPAFDLIFIDADKPNNPHYL--------RWALRYSRPGTLIIG 168

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Length = 223

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 30/118 (25%)

Query: 136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195
            +L++G+  GY T   A  +   G+V+ +E   +  + +  NI + N +     RV +  
Sbjct: 61  NILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLN----DRVEVRT 116

Query: 196 ADAREGYLPE------APYDVI-----------YYGGCVSEVPSRVLNQLKKGGRILA 236
             A +  L +       P+D I           Y+           L   + G  I+ 
Sbjct: 117 GLALD-SLQQIENEKYEPFDFIFIDADKQNNPAYF--------EWALKLSRPGTVIIG 165

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 27/136 (19%)

Query: 369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIA---IESIANISTNH 422
           L+    +  LEIG  +G     +A        +T +      +  A    +  ++IS   
Sbjct: 47  LSSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAA 103

Query: 423 IDL------------IANETIEIIPHILDLCYLN--LHRGAKVLEIGSGSGYLATLMAHL 468
            D+            +  E +    ++ D+  +   +    K+L  G G     +     
Sbjct: 104 TDILQFSTAELFDLIVVAEVLY---YLEDMTQMRTAIDNMVKMLAPG-GHLVFGSARDAT 159

Query: 469 VGPTGHVTGLEHMMDI 484
               GHV G E ++ I
Sbjct: 160 CRRWGHVAGAETVITI 175

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 1/84 (1%)

Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIE-ASLRNISKGNKDLLD 187
           +     + ++D G GSG               +IGV+  P+ +  A+     K NK+  +
Sbjct: 717 IRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACN 776

Query: 188 SGRVRIVEADAREGYLPEAPYDVI 211
                + +    E        D+ 
Sbjct: 777 VKSATLYDGSILEFDSRLHDVDIG 800

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 16/116 (13%)

Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
           L   +   VLDLG G G+     A       KV+G++    ++  + R           S
Sbjct: 40  LPDFNQKTVLDLGCGFGWHCIYAAEH--GAKKVLGIDLSERMLTEAKRK--------TTS 89

Query: 189 GRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPS--RVLNQ----LKKGGRILAPI 238
             V   +    +  +    Y+V+     +  + S   +  +    LK  G  +  +
Sbjct: 90  PVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSV 145

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 9/88 (10%)

Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
            EN+ +       +LDLG G G      A            +     I+ +  NI   N 
Sbjct: 45  VENVVVDK--DDDILDLGCGYGVIGIALAD---EVKSTTMADINRRAIKLAKENIKLNN- 98

Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVI 211
             LD+  +R+V +D  E  + +  Y+ I
Sbjct: 99  --LDNYDIRVVHSDLYEN-VKDRKYNKI 123

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 25/129 (19%), Positives = 40/129 (31%), Gaps = 24/129 (18%)

Query: 116 APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTG-KVIGVEHIPELIEAS 174
             +++ +A + +K       K LDLG G+G  +   A      G  V   +     I   
Sbjct: 20  THSEVLEAVKVVK-----PGKTLDLGCGNGRNSLYLAAN----GYDVDAWDKNAMSIANV 70

Query: 175 LRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGC--------VSEVPSRVLN 226
            R  S  N D      +     D       +  YD I             +  + + +  
Sbjct: 71  ERIKSIENLD-----NLHTRVVDLNN-LTFDRQYDFILSTVVLMFLEAKTIPGLIANMQR 124

Query: 227 QLKKGGRIL 235
             K GG  L
Sbjct: 125 CTKPGGYNL 133

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 27/115 (23%), Positives = 40/115 (34%), Gaps = 23/115 (20%)

Query: 130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG 189
            L  GAK+L+LG G+GYQ        G    V   +  PEL   + R +           
Sbjct: 40  ELPAGAKILELGCGAGYQAEAMLAA-GF--DVDATDGSPELAAEASRRL----------- 85

Query: 190 RVRIVEADAREGYLPEAPYDVIYYGGCVSEVP--------SRVLNQLKKGGRILA 236
              +      +    +  YD ++   C+  VP          +   LK GG   A
Sbjct: 86  GRPVRTMLFHQLDAID-AYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYA 139

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 13/75 (17%), Positives = 30/75 (40%), Gaps = 8/75 (10%)

Query: 355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIA 411
           +    +A ++ +    L    +VL++ +G G++A   A  V     V      E ++ +A
Sbjct: 21  AKGSDLAKLMQI--AALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVA 75

Query: 412 IESIANISTNHIDLI 426
              I       ++ +
Sbjct: 76  RAFIEGNGHQQVEYV 90

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDL 499
             L    +VL++ +G G++A   A  V     V      E ++ +A   I       ++ 
Sbjct: 33  AALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQVEY 89

Query: 500 I 500
           +
Sbjct: 90  V 90

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 24/162 (14%), Positives = 53/162 (32%), Gaps = 45/162 (27%)

Query: 136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195
           ++L++G+  GY     A  + P   ++ +E      E + +++     +     R+ ++ 
Sbjct: 57  RILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALGLE----SRIELLF 111

Query: 196 ADARE---GYLPEAPYDVI-----------YYGGCVSEVPSRVLNQLKKGGRILAPIGPM 241
            DA +          +DV+           ++              ++ GG IL+     
Sbjct: 112 GDALQLGEKLELYPLFDVLFIDAAKGQYRRFF--------DMYSPMVRPGGLILS----- 158

Query: 242 DDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKF 283
                        DN L +  + E   +    K L   I  +
Sbjct: 159 -------------DNVLFRGLVAETDIEHKRHKQLATKIDTY 187

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 29/118 (24%)

Query: 136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195
           +VL++G   GY     A  + P G++I  +  P     + +   K         ++ +  
Sbjct: 75  QVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVA----EKISLRL 130

Query: 196 ADARE------GYLPEAPYDVI-----------YYGGCVSEVPSRVLNQLKKGGRILA 236
             A           P   +D+I           YY           LN L++GG ++ 
Sbjct: 131 GPALATLEQLTQGKPLPEFDLIFIDADKRNYPRYY--------EIGLNLLRRGGLMVI 180

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 28/208 (13%), Positives = 64/208 (30%), Gaps = 35/208 (16%)

Query: 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTG-KVIGVEHIPELIEASLR 176
            + AD A  ++ H    A +LD+  G+G      A         V G+E   +++  + R
Sbjct: 35  REAADLAALVRRHSPKAASLLDVACGTGMHLRHLADS----FGTVEGLELSADMLAIARR 90

Query: 177 NISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY-YGGCVSEVPS---------RVLN 226
                           +   D R+  L    +  +      +  +           R   
Sbjct: 91  RNP----------DAVLHHGDMRDFSLGR-RFSAVTCMFSSIGHLAGQAELDAALERFAA 139

Query: 227 QLKKGGR-ILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQM 285
            +   G  ++ P    ++F          +     T +  V++ +   +A ++++H    
Sbjct: 140 HVLPDGVVVVEPWWFPENFTPGYVAAGTVEAG--GTTVTRVSHSSREGEATRIEVHYLVA 197

Query: 286 DPVDENLFTLMDKDSDELFSERVWELKQ 313
            P             +E     ++  +Q
Sbjct: 198 GPDRG------ITHHEESHRITLFTREQ 219

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 23/134 (17%)

Query: 112 GVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELI 171
           G + +  Q+ D A  L +      +VLDLG G G+     A       + +GV+    L+
Sbjct: 31  GAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRG---IEAVGVDGDRTLV 87

Query: 172 EASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEV-----PSRVLN 226
           +A+                +      A         YD+I    C +          +L+
Sbjct: 88  DAARAA-------GAGEVHLASYAQLAEAKVPVGKDYDLI----CANFALLHQDIIELLS 136

Query: 227 Q----LKKGGRILA 236
                L  GG ++ 
Sbjct: 137 AMRTLLVPGGALVI 150

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 17/120 (14%), Positives = 39/120 (32%), Gaps = 12/120 (10%)

Query: 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISK-GNKDLLDSGRV 191
              ++ D+GS   Y  C FA         I  E +    +++ + +   G  +     ++
Sbjct: 21  KNERIADIGSDHAYLPC-FAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTE-----QI 74

Query: 192 RIVEADAREGYLPEAPYDVIYYGG----CVSEVPSRVLNQLKKGGR-ILAPIGPMDDFQK 246
            + + +       +   D I   G     +  +      +L    + IL P       ++
Sbjct: 75  DVRKGNGLAVIEKKDAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLILQPNIAAWQLRE 134

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 26/115 (22%), Positives = 38/115 (33%), Gaps = 19/115 (16%)

Query: 134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI 193
           G +VLD  +GSG      A  +GPT  V   +   + +  +                +R 
Sbjct: 204 GMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-----WIRF 258

Query: 194 VEADAREGYLPEAPYDVIY----YG---GCVSEVPS-------RVLNQLKKGGRI 234
           + ADAR         D I     +G   G    +           L  L  GGR+
Sbjct: 259 LRADARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRV 313

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 Length = 202

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 21/124 (16%), Positives = 41/124 (33%), Gaps = 38/124 (30%)

Query: 130 HLVDGAKVLDL--GSGS--------GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNIS 179
            ++  A+ LD   GSG+                           +E    +    L    
Sbjct: 51  PVIVDAQCLDCFAGSGALGLEALSRYAAGATL------------IEMDRAVS-QQLIK-- 95

Query: 180 KGNKDLLDSGRVRIVEADAREGYL--PEAPYDVIY----YGGCVSEVPSRVLNQLKKGGR 233
             N   L +G  R+V ++A   +L     P+++++    +      +    +N L+  G 
Sbjct: 96  --NLATLKAGNARVVNSNAMS-FLAQKGTPHNIVFVDPPFR---RGLLEETINLLEDNG- 148

Query: 234 ILAP 237
            LA 
Sbjct: 149 WLAD 152

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 29/118 (24%)

Query: 136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195
           KV+D+G+ +GY        +   G +I  +   +    +     K         ++ +  
Sbjct: 67  KVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLS----DKIGLRL 122

Query: 196 ADARE------GYLPEAPYDVI-----------YYGGCVSEVPSRVLNQLKKGGRILA 236
           + A++             YD+I           YY           L  L++GG I  
Sbjct: 123 SPAKDTLAELIHAGQAWQYDLIYIDADKANTDLYY--------EESLKLLREGGLIAV 172

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225

 Score = 39.9 bits (94), Expect = 9e-04
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 376 KVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESI--ANISTNHIDLIANET 430
           KV++IG+ +GY A  M   +   G +   +       +A E    A +S + I L  +  
Sbjct: 67  KVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLS-DKIGLRLSPA 125

Query: 431 IEIIPHILD 439
            + +  ++ 
Sbjct: 126 KDTLAELIH 134

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 29/118 (24%)

Query: 136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195
           K LDLG+ +GY     A  +   G+V+  E   +  E       +   +     ++ +  
Sbjct: 72  KALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE----HKIDLRL 127

Query: 196 ADARE------GYLPEAPYDVI-----------YYGGCVSEVPSRVLNQLKKGGRILA 236
             A E             +DV            YY         R L  L+ GG +  
Sbjct: 128 KPALETLDELLAAGEAGTFDVAVVDADKENCSAYY--------ERCLQLLRPGGILAV 177

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 40.8 bits (95), Expect = 6e-04
 Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 16/130 (12%)

Query: 115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEAS 174
           N    +       +L       ++D   G+G QT   +       +VIG++     +E +
Sbjct: 38  NVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFF---PRVIGLDVSKSALEIA 94

Query: 175 LRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCV-----SEVPSRVLNQ-- 227
            +  +  N       R+       +   +     D   Y          E    +     
Sbjct: 95  AKENTAANISY----RLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLR 150

Query: 228 --LKKGGRIL 235
             L K G + 
Sbjct: 151 ILLGKQGAMY 160

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score = 40.4 bits (94), Expect = 6e-04
 Identities = 16/120 (13%), Positives = 35/120 (29%), Gaps = 16/120 (13%)

Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
              +    +   + L  G G G+     A    P   V+G++     +  +         
Sbjct: 57  VHLVDTSSLPLGRALVPGCGGGHDVVAMA---SPERFVVGLDISESALAKANET----YG 109

Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVP--------SRVLNQLKKGGRIL 235
               +     V+ D    + P   +D+I+       +           +   LK  G ++
Sbjct: 110 SSPKAEYFSFVKEDVFT-WRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELI 168

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Length = 348

 Score = 41.1 bits (96), Expect = 6e-04
 Identities = 37/178 (20%), Positives = 57/178 (32%), Gaps = 24/178 (13%)

Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
                   VLD+G GSG     FA   G   K+  VE       A    + K N     +
Sbjct: 46  HTDFKDKIVLDVGCGSGI-LSFFAAQAGAR-KIYAVEASTMAQHA--EVLVKSNN---LT 98

Query: 189 GRVRIVEADAREGYLPEAPYDVI--------YYGGCVSEVPSRVLNQLKKGGRILAP--- 237
            R+ ++     E  LPE   D+I         +   + E        LK  G +  P   
Sbjct: 99  DRIVVIPGKVEEVSLPE-QVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMF-PTIG 156

Query: 238 ---IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDPVDENL 292
              + P  D ++L        N   +     V   A+   A+     +  +D  D  +
Sbjct: 157 DVHLAPFTD-EQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRI 213

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} Length = 480

 Score = 41.3 bits (96), Expect = 7e-04
 Identities = 39/183 (21%), Positives = 59/183 (32%), Gaps = 34/183 (18%)

Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
                   VLD+G GSG     FA   G   K+  VE       A    + K N     +
Sbjct: 154 HTDFKDKIVLDVGCGSGI-LSFFAAQAGAR-KIYAVEASTMAQHA--EVLVKSNN---LT 206

Query: 189 GRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVL-------------NQLKKGGRIL 235
            R+ ++     E  LPE   D+I     +SE    +L               LK  G + 
Sbjct: 207 DRIVVIPGKVEEVSLPE-QVDII-----ISEPMGYMLFNERMLESYLHAKKYLKPSGNMF 260

Query: 236 AP------IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDPVD 289
            P      + P  D ++L        N   +     V   A+   A+     +  +D  D
Sbjct: 261 -PTIGDVHLAPFTD-EQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFD 318

Query: 290 ENL 292
             +
Sbjct: 319 IRI 321

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 4/68 (5%)

Query: 376 KVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIANISTNH-IDLIANETI 431
             +EIG  +GY     A  +   G +  ++      ++ +  I     +H ID      +
Sbjct: 82  NTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPAL 141

Query: 432 EIIPHILD 439
            ++  ++ 
Sbjct: 142 PVLDEMIK 149

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 23/119 (19%), Positives = 39/119 (32%), Gaps = 30/119 (25%)

Query: 136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE 195
             +++G  +GY     A  +   GK++ ++   E  E  L  I K   D     ++   E
Sbjct: 82  NTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD----HKIDFRE 137

Query: 196 ADARE-------GYLPEAPYDVI-----------YYGGCVSEVPSRVLNQLKKGGRILA 236
             A                YD I           Y+         R+++ +K GG I  
Sbjct: 138 GPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYH--------KRLIDLVKVGGVIGY 188

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 40.0 bits (93), Expect = 8e-04
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 9/90 (10%)

Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLL 186
           L+  L    ++L LG G+   +        P   V  V++   ++ A     +       
Sbjct: 36  LEPELRPEDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYA------- 86

Query: 187 DSGRVRIVEADAREGYLPEAPYDVIYYGGC 216
              ++R    D R+   P A +DV+   G 
Sbjct: 87  HVPQLRWETMDVRKLDFPSASFDVVLEKGT 116

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241

 Score = 40.0 bits (93), Expect = 8e-04
 Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 10/97 (10%)

Query: 117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLR 176
           P +IA+              V+D   G G  T  FA       +VI ++  P  I  +  
Sbjct: 62  PEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARN 118

Query: 177 NISK-GNKDLLDSGRVRIVEADAREGYLPEAPYDVIY 212
           N    G  D     ++  +  D           DV++
Sbjct: 119 NAEVYGIAD-----KIEFICGDFLL-LASFLKADVVF 149

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	511
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.95
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.94
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.94
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.91
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.9
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.89
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.85
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.81
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.67
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.66
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.61
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.59
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.59
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.59
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.56
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.55
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.55
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.55
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.53
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.53
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.53
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.52
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.52
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.52
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.51
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.51
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.51
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.51
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.51
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.51
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.51
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.51
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.51
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.51
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.5
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.5
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.5
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.5
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.5
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.5
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.5
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.49
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.49
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.49
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.48
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.48
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.48
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.48
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.48
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.47
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.47
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.47
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.47
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.47
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.46
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.46
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.46
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.46
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.45
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.45
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.45
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.45
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.45
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.45
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.44
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.44
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.44
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.44
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.44
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.44
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.44
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.44
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.44
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.44
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.43
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.43
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.43
3ocj_A	305	Putative exported protein; structural genomics, PS	99.43
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.43
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.43
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.43
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.43
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.42
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.42
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.42
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.42
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.42
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.42
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.42
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.42
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.42
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.42
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.42
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.42
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.42
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.42
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.41
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.41
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.41
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.41
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.41
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.41
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.41
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.41
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.41
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.41
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.4
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.4
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.4
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.4
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.4
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.4
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.4
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.4
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.4
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.4
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.4
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.39
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.39
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.39
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.39
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.39
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.39
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.39
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.39
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.38
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.38
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.38
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.38
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.38
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.38
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.37
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.37
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.37
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.37
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.37
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.37
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.36
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.36
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.35
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.35
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.35
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.35
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.35
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.35
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.34
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.34
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.34
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.34
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.33
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.33
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.33
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.33
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.32
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.32
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.31
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.31
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.3
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.29
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.29
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.29
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.29
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.29
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.29
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.29
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.29
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.29
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.29
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.29
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.28
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.28
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.28
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.28
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.28
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.28
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.28
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.28
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.27
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.27
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.27
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.27
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.27
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.26
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.26
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.25
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.25
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.25
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.25
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.25
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.25
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.24
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.24
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.24
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.24
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.24
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.22
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.22
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.22
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.21
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.21
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.21
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.21
2o07_A	304	Spermidine synthase; structural genomics, structur	99.21
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.21
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.2
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.2
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.2
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.19
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.18
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.18
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.18
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.18
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.17
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.17
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.17
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.16
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.16
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.15
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.15
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.15
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.13
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.13
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.12
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.12
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.12
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.12
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.12
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.11
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.11
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.11
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.11
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.11
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.11
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.11
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.1
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.1
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.09
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.09
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.09
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.09
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.08
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.08
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.08
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.07
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.07
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.07
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.06
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.05
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.05
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.05
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.04
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.04
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.04
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.03
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.03
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.02
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.01
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.01
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.01
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.0
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.0
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.0
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.0
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.99
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.99
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.98
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.97
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.97
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.96
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.96
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.96
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.96
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.95
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.95
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.95
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.94
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.94
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.94
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.93
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.93
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.93
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.92
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.92
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	98.91
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.91
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.91
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.91
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.91
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.9
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.9
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.9
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.9
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.9
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.9
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	98.89
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.89
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.89
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.88
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.88
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.88
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.88
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.88
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.88
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.88
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	98.88
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.87
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.87
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.86
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.86
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	98.86
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.85
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.85
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.85
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	98.85
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.84
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.84
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.84
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.84
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	98.84
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	98.83
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.83
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	98.83
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.83
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.82
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.82
3lpm_A	259	Putative methyltransferase; structural genomics, p	98.81
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	98.81
1ws6_A	171	Methyltransferase; structural genomics, riken stru	98.81
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.81
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.8
2b3t_A	276	Protein methyltransferase HEMK; translation termin	98.8
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	98.8
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	98.8
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.8
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.79
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.79
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.79
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.78
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.78
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	98.77
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.77
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.77
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.75
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.75
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.75
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	98.75
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.75
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.74
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.74
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.74
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.74
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.73
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.73
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.73
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.73
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.72
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.72
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.72
2frn_A	278	Hypothetical protein PH0793; structural genomics,	98.71
3khk_A	544	Type I restriction-modification system methylation	98.7
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.7
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.7
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.7
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.69
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.69
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.69
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.68
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.68
2esr_A	177	Methyltransferase; structural genomics, hypothetic	98.68
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.68
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.68
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.68
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	98.68
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.67
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.67
3lkd_A	542	Type I restriction-modification system methyltrans	98.67
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.67
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.67
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.67
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.66
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.66
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.66
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.65
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.65
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.65
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.65
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.65
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.64
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.64
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.64
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.64
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.64
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	98.63
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.63
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.63
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.62
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.62
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.62
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.61
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.61
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.6
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	98.6
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.59
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.59
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.59
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.59
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.59
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.59
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.58
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.58
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.58
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.57
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.57
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.57
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.56
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.56
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.56
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.55
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.55
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.54
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.54
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.54
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.53
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.52
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.52
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.51
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.51
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.51
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.5
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.5
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.49
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.49
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.49
2o07_A	304	Spermidine synthase; structural genomics, structur	98.48
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.48
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.48
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.48
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.47
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.47
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.46
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.46
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.45
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.45
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.45
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.44
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.44
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.44
3ocj_A	305	Putative exported protein; structural genomics, PS	98.44
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.44
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.44
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.43
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.43
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.43
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.43
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.43
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.42
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.41
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.4
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.4
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.4
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.4
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.4
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.4
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.39
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.39
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.39
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.38
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.38
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.37
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.37
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.36
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.35
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.35
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.35
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.34
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.33
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.33
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.32
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.32
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.32
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.31
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.31
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.31
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.3
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.3
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.3
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.3
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.28
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.28
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.28
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.28
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.27
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.26
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.26
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.24
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.24
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.23
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.23
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.23
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.23

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.95  E-value=2.5e-27  Score=220.69  Aligned_cols=218  Identities=36%  Similarity=0.641  Sum_probs=190.2

Q ss_pred             CCCcccCCCccHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCCCCCcccccCCCcccchhHHHHHHHHHHhhcCCC
Q psy7829          54 NLNHFKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVD  133 (511)
Q Consensus        54 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~a~~~~~r~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~  133 (511)
                      ..|.|++++.++..++++|...+++.++.+.++|..++|+.|.+..+|.+.+++++++.++++|.+.+.+++.+...+++
T Consensus         5 ~~m~~~~~~~~~~~l~~~l~~~~~~~~~~~~~a~~~~~r~~f~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~   84 (227)
T 1r18_A            5 IHMAWRSVGANNEDLIRQLKDHGVIASDAVAQAMKETDRKHYSPRNPYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKP   84 (227)
T ss_dssp             CCCCCCCBCSSHHHHHHHHHHTTSCCCHHHHHHHHTSCGGGTCSSCTTBSSCEEEETTEEECCHHHHHHHHHHTTTTCCT
T ss_pred             ceeeeecCccHHHHHHHHHHhcCCCCCHHHHHHHHhCCHHHcCCcccccCCCcccCCCCccCChHHHHHHHHHHHhhCCC
Confidence            46788999999999999999999878999999999999999999999999999999999999999999999988655788


Q ss_pred             CCEEEEEcCCccHHHHHHHHHhCC-----CceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCc
Q psy7829         134 GAKVLDLGSGSGYQTCVFAHMVGP-----TGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPY  208 (511)
Q Consensus       134 ~~~vLDiG~G~G~~~~~la~~~~~-----~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  208 (511)
                      +.+|||+|||+|+++..+++..+.     .++|+++|+++.+++.|++++...+...+..++++++.+|+.+.+...++|
T Consensus        85 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  164 (227)
T 1r18_A           85 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPY  164 (227)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGCSE
T ss_pred             CCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcCCCc
Confidence            999999999999999999997642     368999999999999999998763200000357999999998755444789


Q ss_pred             cEEEecCCCCchHHHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEec
Q psy7829         209 DVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAI  271 (511)
Q Consensus       209 D~I~~~~~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  271 (511)
                      |+|+++.+++++++++.++|||||++++++++....+.+..+.+..++.+..+.++.+.|+|+
T Consensus       165 D~I~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~p~  227 (227)
T 1r18_A          165 NAIHVGAAAPDTPTELINQLASGGRLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVMYVPL  227 (227)
T ss_dssp             EEEEECSCBSSCCHHHHHTEEEEEEEEEEESCSSSCEEEEEEEECTTSCEEEEEEEEECCCCC
T ss_pred             cEEEECCchHHHHHHHHHHhcCCCEEEEEEecCCCceEEEEEEEcCCCcEEEEEeccEEEeeC
Confidence            999999999999999999999999999999987777888888887788899999999999886

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.94  E-value=3.7e-26  Score=212.83  Aligned_cols=216  Identities=27%  Similarity=0.461  Sum_probs=181.9

Q ss_pred             CcccCCCccHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCCCCCcccccCCCcccchhHHHHHHHHHHhhcCCCCC
Q psy7829          56 NHFKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGA  135 (511)
Q Consensus        56 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~a~~~~~r~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~  135 (511)
                      +.|++++.++..++++|+..+.+.++.+.++|+.++|+.|.|..+|.+.++.++.+..+++|.+.+.+++.+...++++.
T Consensus         3 ~~w~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~r~~f~p~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~   82 (227)
T 2pbf_A            3 NMYKLSENNHKSLLENLKRRGIIDDDDVYNTMLQVDRGKYIKEIPYIDTPVYISHGVTISAPHMHALSLKRLINVLKPGS   82 (227)
T ss_dssp             ------CCCHHHHHHHHHHTTSCCCHHHHHHHHTSCGGGTCSSSTTSSSCEEEETTEEECCHHHHHHHHHHHTTTSCTTC
T ss_pred             cccccCchhHHHHHHHHHhcCCcCCHHHHHHHHhCCHHHcCCcccCCCCccccCCCCccCChHHHHHHHHHHHhhCCCCC
Confidence            56888899999999999999877899999999999999999999999999999999999999999999998854578899


Q ss_pred             EEEEEcCCccHHHHHHHHHhC----CCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC----CCCCC
Q psy7829         136 KVLDLGSGSGYQTCVFAHMVG----PTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY----LPEAP  207 (511)
Q Consensus       136 ~vLDiG~G~G~~~~~la~~~~----~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~  207 (511)
                      +|||+|||+|+++..+++..+    +.++|+++|+++.+++.|++++...+...+..++++++.+|+.+.+    ...++
T Consensus        83 ~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  162 (227)
T 2pbf_A           83 RAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELGL  162 (227)
T ss_dssp             EEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHHHCC
T ss_pred             EEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCccCCC
Confidence            999999999999999999876    5679999999999999999998875310001468999999998754    34478


Q ss_pred             ccEEEecCCCCchHHHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEeccc
Q psy7829         208 YDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMR  273 (511)
Q Consensus       208 fD~I~~~~~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  273 (511)
                      ||+|+++.+++++++.+.++|||||++++++.+. ..+.+..+.+ .++.+....++.+.|+|+.+
T Consensus       163 fD~I~~~~~~~~~~~~~~~~LkpgG~lv~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~pl~~  226 (227)
T 2pbf_A          163 FDAIHVGASASELPEILVDLLAENGKLIIPIEED-YTQVLYEITK-KNGKIIKDRLFDVCFVSLKK  226 (227)
T ss_dssp             EEEEEECSBBSSCCHHHHHHEEEEEEEEEEEEET-TEEEEEEEEC-SCC-CEEEEEEEECCCBCCC
T ss_pred             cCEEEECCchHHHHHHHHHhcCCCcEEEEEEccC-CceEEEEEEE-eCCeEEEEEeccEEEEeccC
Confidence            9999999999999999999999999999998863 4466677777 67788889999999999864

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.94  E-value=1.4e-25  Score=208.75  Aligned_cols=221  Identities=42%  Similarity=0.703  Sum_probs=190.3

Q ss_pred             ccCCCccHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCCCCCcccccCCCcccchhHHHHHHHHHHhhcCCCCCEE
Q psy7829          58 FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKV  137 (511)
Q Consensus        58 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~a~~~~~r~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~v  137 (511)
                      |++++.++.+++++|+..|++.++.+.++|..++|+.|.+...|.+.+..++++..+++|.+.+.+++.+..++.++.+|
T Consensus         2 ~~~~~~~~~~l~~~l~~~g~~~~~~~~~a~~~~~r~~f~~~~~y~~~~~~~~~~~~~~~p~~~~~~l~~l~~~~~~~~~v   81 (226)
T 1i1n_A            2 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKA   81 (226)
T ss_dssp             CCCCCSSHHHHHHHHHHTTSCCSHHHHHHHHTSCGGGTCSSCTTSSSCEEEETTEEECCHHHHHHHHHHTTTTSCTTCEE
T ss_pred             cCcCCchHHHHHHHHHHcCCcCCHHHHHHHHhCCHHHcCCCccCCCCccccCCCceecCHHHHHHHHHHHHhhCCCCCEE
Confidence            56778889999999999998789999999999999999998899999999988999999999999998886557789999


Q ss_pred             EEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCC
Q psy7829         138 LDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCV  217 (511)
Q Consensus       138 LDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~  217 (511)
                      ||+|||+|..+..+++..++.++|+++|+++.+++.+++++...+...+..++++++++|+...+...++||+|+++.++
T Consensus        82 LDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~  161 (226)
T 1i1n_A           82 LDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAA  161 (226)
T ss_dssp             EEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEECSBB
T ss_pred             EEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEEEECCch
Confidence            99999999999999998766779999999999999999998774310001458999999987655445789999999999


Q ss_pred             CchHHHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEecccccccc
Q psy7829         218 SEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQM  278 (511)
Q Consensus       218 ~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  278 (511)
                      +++++++.+.|||||++++++.+....+.+..+.+..++.+....++.+.|+|+......|
T Consensus       162 ~~~~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~~~~~  222 (226)
T 1i1n_A          162 PVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQW  222 (226)
T ss_dssp             SSCCHHHHHTEEEEEEEEEEESCTTSCEEEEEEEECTTSCEEEEEEEEECCCBCCCHHHHC
T ss_pred             HHHHHHHHHhcCCCcEEEEEEecCCCceEEEEEEEcCCCcEEEEEcCceEEEeccCCcccc
Confidence            9999999999999999999998776677777888877788988999999999998754334

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.91  E-value=5.4e-23  Score=188.92  Aligned_cols=197  Identities=27%  Similarity=0.493  Sum_probs=172.2

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCC----CCCCCcccccCCCcccchhHHHHHHHHHHhhcCCCCCEEEEE
Q psy7829          65 QTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANE----EPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDL  140 (511)
Q Consensus        65 ~~~l~~~l~~~~~~~~~~~~~a~~~~~r~~~~~~----~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~vLDi  140 (511)
                      ..++.++|+..|+ .++.+.++|..++|+.|.+.    ..|.+.+++++.+..+++|.+.+.+++.+.  ..++.+|||+
T Consensus         8 ~~~~~~~l~~~gv-~~~~~~~~~~~~~r~~f~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~vLdi   84 (210)
T 3lbf_A            8 VQALLDQLRAQGI-QDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARMTELLE--LTPQSRVLEI   84 (210)
T ss_dssp             HHHHHHHHHHTTC-CCHHHHHHHHHSCGGGGSCGGGGGGTTSSSCEECTTSCEECCHHHHHHHHHHTT--CCTTCEEEEE
T ss_pred             HHHHHHHHHHcCC-CCHHHHHHHHhCCHHHcCCcchhhhccCCCccccCCCCEeCCHHHHHHHHHhcC--CCCCCEEEEE
Confidence            4678999999995 79999999999999999876    378888888888999999999999999886  7889999999


Q ss_pred             cCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCCch
Q psy7829         141 GSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEV  220 (511)
Q Consensus       141 G~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~  220 (511)
                      |||+|.++..+++.   ..+|+++|+++.+++.|++++...+     .++++++.+|+.+.+...++||+|+++.+++++
T Consensus        85 G~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~~  156 (210)
T 3lbf_A           85 GTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLD-----LHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEI  156 (210)
T ss_dssp             CCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEESCGGGCCGGGCCEEEEEESSBCSSC
T ss_pred             cCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcC-----CCceEEEECCcccCCccCCCccEEEEccchhhh
Confidence            99999999999998   3579999999999999999998853     458999999998766556789999999999999


Q ss_pred             HHHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEeccccc
Q psy7829         221 PSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKA  275 (511)
Q Consensus       221 ~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  275 (511)
                      ++.+.+.|||||+++++++.  ..+.+..+.+. .+.+....+..+.|+|+.+..
T Consensus       157 ~~~~~~~L~pgG~lv~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~f~pl~~~~  208 (210)
T 3lbf_A          157 PTALMTQLDEGGILVLPVGE--EHQYLKRVRRR-GGEFIIDTVEAVRFVPLVKGE  208 (210)
T ss_dssp             CTHHHHTEEEEEEEEEEECS--SSCEEEEEEEE-TTEEEEEEEEECCCCBCCCSS
T ss_pred             hHHHHHhcccCcEEEEEEcC--CceEEEEEEEc-CCeEEEEEeccEEEEEccCcc
Confidence            99999999999999999887  45666677664 677888889999999998643

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.90  E-value=1.8e-22  Score=188.88  Aligned_cols=207  Identities=26%  Similarity=0.444  Sum_probs=177.0

Q ss_pred             CccHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCC----CCCCcccccCCCcccchhHHHHHHHHHHhhcCCCCCEE
Q psy7829          62 GTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEE----PYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKV  137 (511)
Q Consensus        62 ~~~~~~l~~~l~~~~~~~~~~~~~a~~~~~r~~~~~~~----~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~v  137 (511)
                      ...+..++++|+..+.+.++.+.++|..++|+.|.+..    .|.+.+.++..+..+++|.+...+++.+.  +.++.+|
T Consensus        18 ~~~~~~l~~~l~~~~~~~~~~~~~a~~~v~r~~f~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~v   95 (235)
T 1jg1_A           18 YEKWMRTVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIAN--LKPGMNI   95 (235)
T ss_dssp             HHHHHHHHHHHHHTTSCCSHHHHHHHHHSCGGGGSCGGGGGGTTSSSCEECSTTCEECCHHHHHHHHHHHT--CCTTCCE
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHhCCHhhhCCchhhhcCccCCCcccCCCceeccHHHHHHHHHhcC--CCCCCEE
Confidence            35678899999966666889999999999999998764    68888888888999999999999999886  7889999


Q ss_pred             EEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCC
Q psy7829         138 LDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCV  217 (511)
Q Consensus       138 LDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~  217 (511)
                      ||+|||+|.++..+++..+  .+|+++|+++.+++.|++++...+     .++++++.+|+...+....+||+|+++.++
T Consensus        96 LdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~  168 (235)
T 1jg1_A           96 LEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAG-----VKNVHVILGDGSKGFPPKAPYDVIIVTAGA  168 (235)
T ss_dssp             EEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEESCGGGCCGGGCCEEEEEECSBB
T ss_pred             EEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcC-----CCCcEEEECCcccCCCCCCCccEEEECCcH
Confidence            9999999999999999873  689999999999999999998753     457999999985544444569999999999


Q ss_pred             CchHHHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEecccccccc
Q psy7829         218 SEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQM  278 (511)
Q Consensus       218 ~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  278 (511)
                      +++++++.+.|||||+++++++.....+.+..+.+ .++.+....++.+.|+|+......+
T Consensus       169 ~~~~~~~~~~L~pgG~lvi~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~f~p~~~~~~~~  228 (235)
T 1jg1_A          169 PKIPEPLIEQLKIGGKLIIPVGSYHLWQELLEVRK-TKDGIKIKNHGGVAFVPLIGEYGWK  228 (235)
T ss_dssp             SSCCHHHHHTEEEEEEEEEEECSSSSCEEEEEEEE-ETTEEEEEEEEEECCCBCBSTTSBC
T ss_pred             HHHHHHHHHhcCCCcEEEEEEecCCCccEEEEEEE-eCCeEEEEEeccEEEEEccCCCcch
Confidence            99999999999999999999987655467777777 4678888999999999998765443

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.89  E-value=4.3e-22  Score=183.58  Aligned_cols=201  Identities=33%  Similarity=0.554  Sum_probs=171.9

Q ss_pred             cHHHHHHHH-HHcCCCCCHHHHHHHHhCCCCCccCC----CCCCCcccccCCCcccchhHHHHHHHHHHhhcCCCCCEEE
Q psy7829          64 CQTDLVNHL-RDIGKIRTERVAQAFYKVDRGNFANE----EPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVL  138 (511)
Q Consensus        64 ~~~~l~~~l-~~~~~~~~~~~~~a~~~~~r~~~~~~----~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~vL  138 (511)
                      .+..++++| +..+ +.++.+.++++.++|..|.+.    ..|.+.+.+.+.+..+++|.+...+++.+.  +.++.+||
T Consensus         6 ~~~~~~~~l~~~~~-~~~~~v~~a~~~~~r~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vL   82 (215)
T 2yxe_A            6 QKKAVIEKLIREGY-IKSKRVIDALLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMMCELLD--LKPGMKVL   82 (215)
T ss_dssp             HHHHHHHHHHHHTS-CCCHHHHHHHHHSCGGGGSCGGGGGGTTSCSCEEEETTEEECCHHHHHHHHHHTT--CCTTCEEE
T ss_pred             HHHHHHHHhHHhcC-CCCHHHHHHHHhCCHHHcCCchhhhhcccCCCccCCCCcEeCcHHHHHHHHHhhC--CCCCCEEE
Confidence            356788999 8888 579999999999999988875    378888888888888999999999888885  77899999


Q ss_pred             EEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCC
Q psy7829         139 DLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVS  218 (511)
Q Consensus       139 DiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~  218 (511)
                      |+|||+|.++..+++..++..+|+++|+++.+++.+++++...+     .++++++.+|+...+...++||+|+++.+++
T Consensus        83 diG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~  157 (215)
T 2yxe_A           83 EIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG-----YDNVIVIVGDGTLGYEPLAPYDRIYTTAAGP  157 (215)
T ss_dssp             EECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHT-----CTTEEEEESCGGGCCGGGCCEEEEEESSBBS
T ss_pred             EECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCeEEEECCcccCCCCCCCeeEEEECCchH
Confidence            99999999999999998666899999999999999999988753     4579999999866554357899999999999


Q ss_pred             chHHHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEeccccc
Q psy7829         219 EVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKA  275 (511)
Q Consensus       219 ~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  275 (511)
                      ++++++.+.|||||++++.+....  +.+..+.+. .+.+....++.+.|.|+.+..
T Consensus       158 ~~~~~~~~~L~pgG~lv~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~  211 (215)
T 2yxe_A          158 KIPEPLIRQLKDGGKLLMPVGRYL--QRLVLAEKR-GDEIIIKDCGPVAFVPLVGKE  211 (215)
T ss_dssp             SCCHHHHHTEEEEEEEEEEESSSS--EEEEEEEEE-TTEEEEEEEEEECCCBCBSTT
T ss_pred             HHHHHHHHHcCCCcEEEEEECCCC--cEEEEEEEe-CCEEEEEEeccEEEEeccccc
Confidence            999999999999999999987663  777777776 457888888888999987553

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.85  E-value=2.1e-20  Score=182.62  Aligned_cols=200  Identities=29%  Similarity=0.408  Sum_probs=165.2

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCC-----CCCCccc-ccCCC---cccchhHHHHHHHHHHhhcCCCCC
Q psy7829          65 QTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEE-----PYQDVSA-SLGYA---GVMNAPNQIADAAENLKLHLVDGA  135 (511)
Q Consensus        65 ~~~l~~~l~~~~~~~~~~~~~a~~~~~r~~~~~~~-----~y~~~~~-~~~~~---~~~~~p~~~~~~~~~l~~~~~~~~  135 (511)
                      +.++.++|+..|+ .+ .+.++|+.+||+.|.++.     .|.+.+. ++..+   +.+++|.+...+++.+.  ++++.
T Consensus         2 ~~~~~~~l~~~gi-~~-~v~~a~~~vpr~~fl~~~~~y~~~y~~~~~~~l~~~~f~q~~~~~~~~~~l~~~l~--~~~~~   77 (317)
T 1dl5_A            2 REKLFWILKKYGV-SD-HIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGM   77 (317)
T ss_dssp             HHHHHHHHHHTTC-CH-HHHHHHHHSCGGGGCSSCCCHHHHTSSSCEEEEECSSCEEEECCHHHHHHHHHHTT--CCTTC
T ss_pred             hHHHHHHHHHcCC-hH-HHHHHHHhCCHHHhCCchhccccCccCCCcccccCCCcceeccCHHHHHHHHHhcC--CCCcC
Confidence            3578899999995 56 999999999999888753     5677777 77777   78888889998888886  78899


Q ss_pred             EEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecC
Q psy7829         136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGG  215 (511)
Q Consensus       136 ~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~  215 (511)
                      +|||+|||+|.++..+++..+..++|+++|+++.+++.|++++...+     .++++++.+|+.+.++..++||+|+++.
T Consensus        78 ~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g-----~~~v~~~~~d~~~~~~~~~~fD~Iv~~~  152 (317)
T 1dl5_A           78 RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG-----IENVIFVCGDGYYGVPEFSPYDVIFVTV  152 (317)
T ss_dssp             EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEESCGGGCCGGGCCEEEEEECS
T ss_pred             EEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCeEEEECChhhccccCCCeEEEEEcC
Confidence            99999999999999999987445789999999999999999998754     4579999999987554457899999999


Q ss_pred             CCCchHHHHHhhcccCcEEEEEEccCC-CcceEEEEEEecCCeEEEEeecceEEEecccc
Q psy7829         216 CVSEVPSRVLNQLKKGGRILAPIGPMD-DFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRK  274 (511)
Q Consensus       216 ~~~~~~~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  274 (511)
                      +++++.+.+.+.|||||++++.+.+.. ..+.+..+.+. .+.+....++++.|.|+...
T Consensus       153 ~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~  211 (317)
T 1dl5_A          153 GVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKK-DPYLVGNYKLETRFITAGGN  211 (317)
T ss_dssp             BBSCCCHHHHHHEEEEEEEEEEBCBGGGTBCEEEEEEEE-TTEEEEEEEEECCCCBCCGG
T ss_pred             CHHHHHHHHHHhcCCCcEEEEEECCCCcccceEEEEEEe-CCcEEEEEeccEEEEEccCc
Confidence            999999999999999999999876553 13555556554 34677788888778877654

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.81  E-value=2.6e-19  Score=166.77  Aligned_cols=179  Identities=30%  Similarity=0.407  Sum_probs=146.3

Q ss_pred             CHHHHHHHHhCCCCCccCCC----CCC--CcccccCCCcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHH
Q psy7829          80 TERVAQAFYKVDRGNFANEE----PYQ--DVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAH  153 (511)
Q Consensus        80 ~~~~~~a~~~~~r~~~~~~~----~y~--~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~  153 (511)
                      ++.+.++|..+||..|.+..    .|.  +...+.+.+..+++|.+...+++.+.  ..++.+|||+|||+|.++..+++
T Consensus        13 ~~~v~~a~~~v~r~~f~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~   90 (231)
T 1vbf_A           13 TQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDELD--LHKGQKVLEIGTGIGYYTALIAE   90 (231)
T ss_dssp             CHHHHHHHHHSCHHHHSCGGGGGGSSSSTTCCEEEETTEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHH
T ss_pred             CHHHHHHHHhCCHHHcCCcchhhhccccCCCceeeCCCCccCCHHHHHHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHH
Confidence            78899999999999887753    788  88888888888889999998888886  77899999999999999999999


Q ss_pred             HhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCCchHHHHHhhcccCcE
Q psy7829         154 MVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGR  233 (511)
Q Consensus       154 ~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~  233 (511)
                      ..   .+|+++|+++.+++.+++++...     .  +++++.+|+.+.++..++||+|+++.++++++.++.+.|||||+
T Consensus        91 ~~---~~v~~vD~~~~~~~~a~~~~~~~-----~--~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~pgG~  160 (231)
T 1vbf_A           91 IV---DKVVSVEINEKMYNYASKLLSYY-----N--NIKLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGI  160 (231)
T ss_dssp             HS---SEEEEEESCHHHHHHHHHHHTTC-----S--SEEEEESCGGGCCGGGCCEEEEEESSBBSSCCHHHHHTEEEEEE
T ss_pred             Hc---CEEEEEeCCHHHHHHHHHHHhhc-----C--CeEEEECCcccccccCCCccEEEECCcHHHHHHHHHHHcCCCcE
Confidence            85   57999999999999999998763     1  79999999987444457899999999999999999999999999


Q ss_pred             EEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEecc
Q psy7829         234 ILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIM  272 (511)
Q Consensus       234 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  272 (511)
                      +++.+.... ...+..+.+. .+.+....+....|.|+.
T Consensus       161 l~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  197 (231)
T 1vbf_A          161 MILPIGVGR-VQKLYKVIKK-GNSPSLENLGEVMFGRIG  197 (231)
T ss_dssp             EEEEECSSS-SEEEEEEECC-TTSCEEEEEEEECCCBCC
T ss_pred             EEEEEcCCC-ccEEEEEEEc-CCeeEEEEeccEEEEEcC
Confidence            999877553 3444444443 344555555555555554

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.67  E-value=7.7e-16  Score=164.70  Aligned_cols=119  Identities=15%  Similarity=0.097  Sum_probs=89.7

Q ss_pred             chhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhC--------------------------------------
Q psy7829         115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVG--------------------------------------  156 (511)
Q Consensus       115 ~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~--------------------------------------  156 (511)
                      ..+.+.+.++.+..  ..++..|||.+||||.+.+.++....                                      
T Consensus       174 l~e~LAa~ll~~~~--~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~  251 (703)
T 3v97_A          174 IKETLAAAIVMRSG--WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKG  251 (703)
T ss_dssp             SCHHHHHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHhhC--CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhc
Confidence            34556666776664  67888999999999999988887531                                      


Q ss_pred             ---CCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCC--CCCccEEEecCCCCch----------H
Q psy7829         157 ---PTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLP--EAPYDVIYYGGCVSEV----------P  221 (511)
Q Consensus       157 ---~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~I~~~~~~~~~----------~  221 (511)
                         +..+++|+|+++.+++.|++|+..+|    ..+.++|.++|+.+...+  .+.||+|++|+|+..-          .
T Consensus       252 ~~~~~~~i~G~Did~~av~~A~~N~~~ag----v~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly  327 (703)
T 3v97_A          252 LAEYSSHFYGSDSDARVIQRARTNARLAG----IGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALH  327 (703)
T ss_dssp             HHHCCCCEEEEESCHHHHHHHHHHHHHTT----CGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHH
T ss_pred             cccCCccEEEEECCHHHHHHHHHHHHHcC----CCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHH
Confidence               23579999999999999999999986    334699999999864322  2389999999997321          1


Q ss_pred             ---HHHHhhcccCcEEEEEEc
Q psy7829         222 ---SRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       222 ---~~~~~~LkpgG~l~~~~~  239 (511)
                         .+..+.+.|||.+++.++
T Consensus       328 ~~l~~~lk~~~~g~~~~ilt~  348 (703)
T 3v97_A          328 SLLGRIMKNQFGGWNLSLFSA  348 (703)
T ss_dssp             HHHHHHHHHHCTTCEEEEEES
T ss_pred             HHHHHHHHhhCCCCeEEEEeC
Confidence               234455668999998655

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.66  E-value=7e-16  Score=145.62  Aligned_cols=113  Identities=19%  Similarity=0.286  Sum_probs=92.9

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVG-PTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD  197 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  197 (511)
                      +...+..++...++++.+|||+|||+|..+..+++.+. ++.+|+|+|+|+.|++.|+++++..+    ...+++++++|
T Consensus        56 ~~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~----~~~~v~~~~~D  131 (261)
T 4gek_A           56 IISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK----APTPVDVIEGD  131 (261)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSC----CSSCEEEEESC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhc----cCceEEEeecc
Confidence            34444445555688999999999999999999999864 46699999999999999999998764    35689999999


Q ss_pred             CCCCCCCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEE
Q psy7829         198 AREGYLPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       198 ~~~~~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~  237 (511)
                      +.+...  +.||+|+++.+++++        ++++++.|||||.|++.
T Consensus       132 ~~~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~  177 (261)
T 4gek_A          132 IRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLS  177 (261)
T ss_dssp             TTTCCC--CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccc--cccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEE
Confidence            986433  569999999888654        36889999999999985

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.61  E-value=1.7e-14  Score=131.21  Aligned_cols=119  Identities=24%  Similarity=0.281  Sum_probs=98.5

Q ss_pred             ccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeE
Q psy7829         113 VMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVR  192 (511)
Q Consensus       113 ~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~  192 (511)
                      .++.+.+...+++.+.  +.++.+|||+|||+|.++..+++.   ..+|+++|+++.+++.|+++++.++    ..++++
T Consensus        37 ~~~~~~~~~~~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g----~~~~v~  107 (204)
T 3njr_A           37 QITKSPMRALTLAALA--PRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYG----LSPRMR  107 (204)
T ss_dssp             CCCCHHHHHHHHHHHC--CCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT----CTTTEE
T ss_pred             CCCcHHHHHHHHHhcC--CCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcC----CCCCEE
Confidence            4556667777777776  778999999999999999999987   4589999999999999999998864    233899


Q ss_pred             EEEccCCCCCCCCCCccEEEecCCCCc-hHHHHHhhcccCcEEEEEEcc
Q psy7829         193 IVEADAREGYLPEAPYDVIYYGGCVSE-VPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       193 ~~~~d~~~~~~~~~~fD~I~~~~~~~~-~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      ++++|+.+.+.....||+|+++..... +.+++.+.|||||++++....
T Consensus       108 ~~~~d~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  156 (204)
T 3njr_A          108 AVQGTAPAALADLPLPEAVFIGGGGSQALYDRLWEWLAPGTRIVANAVT  156 (204)
T ss_dssp             EEESCTTGGGTTSCCCSEEEECSCCCHHHHHHHHHHSCTTCEEEEEECS
T ss_pred             EEeCchhhhcccCCCCCEEEECCcccHHHHHHHHHhcCCCcEEEEEecC
Confidence            999999874444467999999876644 678999999999999997653

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.59  E-value=1.3e-14  Score=128.87  Aligned_cols=119  Identities=24%  Similarity=0.264  Sum_probs=97.7

Q ss_pred             ccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeE
Q psy7829         113 VMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVR  192 (511)
Q Consensus       113 ~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~  192 (511)
                      .++.+.+...+++.+.  ..++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++++...+    ...++ 
T Consensus         7 ~~t~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~-   78 (178)
T 3hm2_A            7 QLTKQHVRALAISALA--PKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLG----VSDRI-   78 (178)
T ss_dssp             CSHHHHHHHHHHHHHC--CCTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTT----CTTSE-
T ss_pred             cccHHHHHHHHHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhC----CCCCE-
Confidence            3445566777777775  7788999999999999999999986 67899999999999999999998864    23378 


Q ss_pred             EEEccCCCCCCCC-CCccEEEecCCCCc--hHHHHHhhcccCcEEEEEEc
Q psy7829         193 IVEADAREGYLPE-APYDVIYYGGCVSE--VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       193 ~~~~d~~~~~~~~-~~fD~I~~~~~~~~--~~~~~~~~LkpgG~l~~~~~  239 (511)
                      ++.+|..+.++.. ++||+|+++.++++  +.+++.+.|||||++++...
T Consensus        79 ~~~~d~~~~~~~~~~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  128 (178)
T 3hm2_A           79 AVQQGAPRAFDDVPDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLVANAV  128 (178)
T ss_dssp             EEECCTTGGGGGCCSCCSEEEECC-TTCTTHHHHHHHTCCTTCEEEEEEC
T ss_pred             EEecchHhhhhccCCCCCEEEECCcccHHHHHHHHHHhcCCCCEEEEEee
Confidence            8889986544332 78999999988876  77999999999999998654

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.59  E-value=2e-14  Score=130.83  Aligned_cols=117  Identities=26%  Similarity=0.325  Sum_probs=98.8

Q ss_pred             chhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEE
Q psy7829         115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIV  194 (511)
Q Consensus       115 ~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~  194 (511)
                      +...+.+.+++.+.  +.++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++++..++     .++++++
T Consensus        24 ~~~~i~~~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~   95 (204)
T 3e05_A           24 TKQEVRAVTLSKLR--LQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLKKFV-----ARNVTLV   95 (204)
T ss_dssp             CCHHHHHHHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHC-TTSEEEEEECCHHHHHHHHHHHHHHT-----CTTEEEE
T ss_pred             ChHHHHHHHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEE
Confidence            55556677777776  7789999999999999999999985 77899999999999999999998864     4689999


Q ss_pred             EccCCCCCCCCCCccEEEecCCCC---chHHHHHhhcccCcEEEEEEc
Q psy7829         195 EADAREGYLPEAPYDVIYYGGCVS---EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       195 ~~d~~~~~~~~~~fD~I~~~~~~~---~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      ++|+.+.....++||+|+++.+..   .+.+++.+.|||||++++...
T Consensus        96 ~~d~~~~~~~~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  143 (204)
T 3e05_A           96 EAFAPEGLDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAV  143 (204)
T ss_dssp             ECCTTTTCTTSCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             eCChhhhhhcCCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEec
Confidence            999976554447899999998764   345889999999999999654

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.59  E-value=8.2e-15  Score=134.26  Aligned_cols=113  Identities=25%  Similarity=0.342  Sum_probs=92.3

Q ss_pred             HHHHHHHHHhh-cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc
Q psy7829         119 QIADAAENLKL-HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD  197 (511)
Q Consensus       119 ~~~~~~~~l~~-~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  197 (511)
                      +.+.++..+.. .++||.+|||+|||+|+++..+|+.+++.++|+++|+++.|++.+++++++       .+|+..+.+|
T Consensus        62 laa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~-------~~ni~~V~~d  134 (233)
T 4df3_A           62 LAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD-------RRNIFPILGD  134 (233)
T ss_dssp             HHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT-------CTTEEEEESC
T ss_pred             HHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh-------hcCeeEEEEe
Confidence            44545544432 478999999999999999999999999999999999999999999998765       3489999999


Q ss_pred             CCCC---CCCCCCccEEEecCCCCc----hHHHHHhhcccCcEEEEEE
Q psy7829         198 AREG---YLPEAPYDVIYYGGCVSE----VPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       198 ~~~~---~~~~~~fD~I~~~~~~~~----~~~~~~~~LkpgG~l~~~~  238 (511)
                      ....   ....+.+|+|+++.+.+.    +..++.+.|||||++++.+
T Consensus       135 ~~~p~~~~~~~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~i  182 (233)
T 4df3_A          135 ARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMAI  182 (233)
T ss_dssp             TTCGGGGTTTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCccccccccceEEEEEEeccCChhHHHHHHHHHHhccCCCEEEEEE
Confidence            8642   223478999999877765    3478899999999999865

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.56  E-value=2.6e-14  Score=134.92  Aligned_cols=114  Identities=25%  Similarity=0.285  Sum_probs=95.2

Q ss_pred             hhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEE
Q psy7829         116 APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE  195 (511)
Q Consensus       116 ~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  195 (511)
                      .+.....+++.+.  +.++.+|||+|||+|..+..+++.+  ..+|+++|+|+.+++.|++++...+    ..+++++++
T Consensus        21 ~~~~~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~v~~~~   92 (256)
T 1nkv_A           21 TEEKYATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELG----VSERVHFIH   92 (256)
T ss_dssp             CHHHHHHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEE
T ss_pred             CHHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcC----CCcceEEEE
Confidence            3445666676665  7789999999999999999999987  3589999999999999999988764    345899999


Q ss_pred             ccCCCCCCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEE
Q psy7829         196 ADAREGYLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       196 ~d~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~  238 (511)
                      +|+.+... .++||+|++..+++++      ++++.++|||||++++..
T Consensus        93 ~d~~~~~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A           93 NDAAGYVA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             SCCTTCCC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             CChHhCCc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEec
Confidence            99987554 6889999998777655      588999999999999854

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.55  E-value=2.3e-14  Score=129.68  Aligned_cols=105  Identities=22%  Similarity=0.359  Sum_probs=88.8

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC-CCCCCcc
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY-LPEAPYD  209 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD  209 (511)
                      ++++.+|||+|||+|.++..+++.+++.++|+++|+++.+++.|++++..++    ..++++++++|+.... ...++||
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~fD   95 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN----LIDRVTLIKDGHQNMDKYIDCPVK   95 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTT----CGGGEEEECSCGGGGGGTCCSCEE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCCeEEEECCHHHHhhhccCCce
Confidence            7789999999999999999999998777899999999999999999998864    2368999999987542 2347899


Q ss_pred             EEEecCCC---------------CchHHHHHhhcccCcEEEEEEc
Q psy7829         210 VIYYGGCV---------------SEVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       210 ~I~~~~~~---------------~~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      +|+++.++               ..+.+++.+.|||||++++...
T Consensus        96 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  140 (197)
T 3eey_A           96 AVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY  140 (197)
T ss_dssp             EEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence            99998765               1356889999999999998754

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.55  E-value=4.6e-14  Score=133.23  Aligned_cols=101  Identities=19%  Similarity=0.179  Sum_probs=84.3

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCcc
Q psy7829         130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYD  209 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  209 (511)
                      .++++.+|||||||+|.++..++.+. +.++|+++|+++++++.|++++++.|     .++++|+++|+.+..  +++||
T Consensus       119 ~l~~g~rVLDIGcG~G~~ta~~lA~~-~ga~V~gIDis~~~l~~Ar~~~~~~g-----l~~v~~v~gDa~~l~--d~~FD  190 (298)
T 3fpf_A          119 RFRRGERAVFIGGGPLPLTGILLSHV-YGMRVNVVEIEPDIAELSRKVIEGLG-----VDGVNVITGDETVID--GLEFD  190 (298)
T ss_dssp             TCCTTCEEEEECCCSSCHHHHHHHHT-TCCEEEEEESSHHHHHHHHHHHHHHT-----CCSEEEEESCGGGGG--GCCCS
T ss_pred             CCCCcCEEEEECCCccHHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHhcC-----CCCeEEEECchhhCC--CCCcC
Confidence            37899999999999998765544443 46799999999999999999998865     378999999998742  57899


Q ss_pred             EEEecCCCC---chHHHHHhhcccCcEEEEEE
Q psy7829         210 VIYYGGCVS---EVPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       210 ~I~~~~~~~---~~~~~~~~~LkpgG~l~~~~  238 (511)
                      +|++.....   .+++++.++|||||+|++..
T Consensus       191 vV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~  222 (298)
T 3fpf_A          191 VLMVAALAEPKRRVFRNIHRYVDTETRIIYRT  222 (298)
T ss_dssp             EEEECTTCSCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             EEEECCCccCHHHHHHHHHHHcCCCcEEEEEc
Confidence            999877654   46789999999999999854

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.55  E-value=2.4e-14  Score=136.95  Aligned_cols=134  Identities=16%  Similarity=0.185  Sum_probs=105.0

Q ss_pred             CCCCCcccccCCCcccchhHHHH---HHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Q psy7829          99 EPYQDVSASLGYAGVMNAPNQIA---DAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASL  175 (511)
Q Consensus        99 ~~y~~~~~~~~~~~~~~~p~~~~---~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~  175 (511)
                      ..|.+..+.+..+..+++|....   .+++.+.  ..++.+|||+|||+|.++..+++.  +..+|+++|+|+.+++.|+
T Consensus        88 ~~f~~~~~~v~~~~lipr~~te~lv~~~l~~~~--~~~~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~  163 (284)
T 1nv8_A           88 KEFMGLSFLVEEGVFVPRPETEELVELALELIR--KYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIAR  163 (284)
T ss_dssp             EEETTEEEECCTTSCCCCTTHHHHHHHHHHHHH--HHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHH
T ss_pred             eEECCeEEEeCCCceecChhHHHHHHHHHHHhc--ccCCCEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHH
Confidence            35677777887788887775433   3444443  236789999999999999999998  6789999999999999999


Q ss_pred             HHHhccCCCcCCCCCeEEEEccCCCCCCCCCCc---cEEEecCCCC-------------------------chHHHHH-h
Q psy7829         176 RNISKGNKDLLDSGRVRIVEADAREGYLPEAPY---DVIYYGGCVS-------------------------EVPSRVL-N  226 (511)
Q Consensus       176 ~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f---D~I~~~~~~~-------------------------~~~~~~~-~  226 (511)
                      +|+..++    ...+++|+++|+.+...  ++|   |+|++++++.                         .+.+++. +
T Consensus       164 ~n~~~~~----l~~~v~~~~~D~~~~~~--~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~  237 (284)
T 1nv8_A          164 KNAERHG----VSDRFFVRKGEFLEPFK--EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGR  237 (284)
T ss_dssp             HHHHHTT----CTTSEEEEESSTTGGGG--GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHH
T ss_pred             HHHHHcC----CCCceEEEECcchhhcc--cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHh
Confidence            9998865    23459999999986432  478   9999986653                         2457888 9


Q ss_pred             hcccCcEEEEEEccCC
Q psy7829         227 QLKKGGRILAPIGPMD  242 (511)
Q Consensus       227 ~LkpgG~l~~~~~~~~  242 (511)
                      .|+|||.+++.++..+
T Consensus       238 ~l~pgG~l~~e~~~~q  253 (284)
T 1nv8_A          238 YDTSGKIVLMEIGEDQ  253 (284)
T ss_dssp             CCCTTCEEEEECCTTC
T ss_pred             cCCCCCEEEEEECchH
Confidence            9999999999877554

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.53  E-value=5.3e-14  Score=125.88  Aligned_cols=111  Identities=17%  Similarity=0.198  Sum_probs=86.1

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829         121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE  200 (511)
Q Consensus       121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  200 (511)
                      ......+...++++.+|||+|||+|.++..+++.   ..+|+|+|+|+.+++.|+++++.++     .+++++++.|...
T Consensus        10 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~-----~~~v~~~~~~~~~   81 (185)
T 3mti_A           10 HMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLG-----IENTELILDGHEN   81 (185)
T ss_dssp             HHHHHHHHTTCCTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHT-----CCCEEEEESCGGG
T ss_pred             HHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEeCcHHH
Confidence            3344445555778999999999999999999987   4689999999999999999998864     3689999977654


Q ss_pred             CC-CCCCCccEEEecCCC-Cc--------------hHHHHHhhcccCcEEEEEEc
Q psy7829         201 GY-LPEAPYDVIYYGGCV-SE--------------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       201 ~~-~~~~~fD~I~~~~~~-~~--------------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      .. ...++||+|+++... +.              ..+++.+.|||||++++.+.
T Consensus        82 l~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  136 (185)
T 3mti_A           82 LDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY  136 (185)
T ss_dssp             GGGTCCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHhhccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence            21 124789999988322 21              23788899999999998765

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.53  E-value=2.9e-14  Score=131.24  Aligned_cols=100  Identities=10%  Similarity=0.163  Sum_probs=84.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCC-CCeEEEEccCCCCCC--CCCCcc
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS-GRVRIVEADAREGYL--PEAPYD  209 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~--~~~~fD  209 (511)
                      ++.+|||+|||+|+.+..+++.+++.++|+++|+++.+++.|+++++..+    .. ++++++++|+.+..+  ..++||
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g----~~~~~i~~~~gda~~~l~~~~~~~fD  131 (221)
T 3dr5_A           56 GSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG----YSPSRVRFLLSRPLDVMSRLANDSYQ  131 (221)
T ss_dssp             TCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTT----CCGGGEEEECSCHHHHGGGSCTTCEE
T ss_pred             CCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCcCcEEEEEcCHHHHHHHhcCCCcC
Confidence            34599999999999999999988668999999999999999999999875    23 589999999865322  247899


Q ss_pred             EEEecCCCCc---hHHHHHhhcccCcEEEE
Q psy7829         210 VIYYGGCVSE---VPSRVLNQLKKGGRILA  236 (511)
Q Consensus       210 ~I~~~~~~~~---~~~~~~~~LkpgG~l~~  236 (511)
                      +|+++.....   +.+.+.+.|||||.+++
T Consensus       132 ~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~  161 (221)
T 3dr5_A          132 LVFGQVSPMDLKALVDAAWPLLRRGGALVL  161 (221)
T ss_dssp             EEEECCCTTTHHHHHHHHHHHEEEEEEEEE
T ss_pred             eEEEcCcHHHHHHHHHHHHHHcCCCcEEEE
Confidence            9999887654   34788999999999997

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.53  E-value=4.9e-14  Score=138.69  Aligned_cols=139  Identities=18%  Similarity=0.230  Sum_probs=108.5

Q ss_pred             CCCCcccccCCCcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHh
Q psy7829         100 PYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNIS  179 (511)
Q Consensus       100 ~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~  179 (511)
                      .|.+....+..+..+..|...+.+++.+.  +.++.+|||+|||+|+++..+++.+++.++|+++|+++.+++.|++++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~  151 (336)
T 2b25_A           74 ALEDYVVLMKRGTAITFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYK  151 (336)
T ss_dssp             CHHHHHHHSCCSSCCCCHHHHHHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHH
T ss_pred             CHHHHhhhhcCCCcccCHHHHHHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Confidence            44555556667788888888888888886  7899999999999999999999987777899999999999999999987


Q ss_pred             ccC----CCcC--CCCCeEEEEccCCCCC--CCCCCccEEEecCCCCc-hHHHHHhhcccCcEEEEEEcc
Q psy7829         180 KGN----KDLL--DSGRVRIVEADAREGY--LPEAPYDVIYYGGCVSE-VPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       180 ~~~----~~~~--~~~~v~~~~~d~~~~~--~~~~~fD~I~~~~~~~~-~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      ..+    .+.+  ..++++++.+|+.+..  .+.++||+|+++.+.++ ++.++.+.|||||.+++....
T Consensus       152 ~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  221 (336)
T 2b25_A          152 HWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVN  221 (336)
T ss_dssp             HHHHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEESS
T ss_pred             HhhcccccccccccCCceEEEECChHHcccccCCCCeeEEEECCCCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            521    0000  1358999999998643  23467999999876554 468999999999999987653

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.52  E-value=8e-14  Score=128.17  Aligned_cols=118  Identities=13%  Similarity=0.123  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc
Q psy7829         118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD  197 (511)
Q Consensus       118 ~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  197 (511)
                      .....+++.+.  ..++.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.|++++...+.......+++++++|
T Consensus        16 ~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d   92 (217)
T 3jwh_A           16 QRMNGVVAALK--QSNARRVIDLGCGQGNLLKILLKDS-FFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGA   92 (217)
T ss_dssp             HHHHHHHHHHH--HTTCCEEEEETCTTCHHHHHHHHCT-TCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECC
T ss_pred             HHHHHHHHHHH--hcCCCEEEEeCCCCCHHHHHHHhhC-CCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCC
Confidence            34555666665  4578899999999999999999875 56799999999999999999987653100001279999999


Q ss_pred             CCCCCCCCCCccEEEecCCCCchH--------HHHHhhcccCcEEEEEE
Q psy7829         198 AREGYLPEAPYDVIYYGGCVSEVP--------SRVLNQLKKGGRILAPI  238 (511)
Q Consensus       198 ~~~~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~l~~~~  238 (511)
                      +.......++||+|++..+++++.        +++.+.|||||.+++..
T Consensus        93 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~  141 (217)
T 3jwh_A           93 LTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP  141 (217)
T ss_dssp             TTSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             cccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            865443447899999998886543        67889999999776643

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.52  E-value=8.8e-14  Score=128.02  Aligned_cols=112  Identities=21%  Similarity=0.318  Sum_probs=94.9

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829         121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE  200 (511)
Q Consensus       121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  200 (511)
                      ..+++.+.  +.++.+|||+|||+|.++..+++..++..+|+++|+++.+++.+++++...+     .++++++.+|+..
T Consensus        27 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~   99 (219)
T 3dh0_A           27 EKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG-----LKNVEVLKSEENK   99 (219)
T ss_dssp             HHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHT-----CTTEEEEECBTTB
T ss_pred             HHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEeccccc
Confidence            44566665  6788999999999999999999998677899999999999999999988753     4589999999987


Q ss_pred             CCCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEEc
Q psy7829         201 GYLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       201 ~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~  239 (511)
                      .....++||+|+++.+++++      .+++.+.|||||.+++...
T Consensus       100 ~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~  144 (219)
T 3dh0_A          100 IPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDW  144 (219)
T ss_dssp             CSSCSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEe
Confidence            55556789999999887654      4789999999999998643

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.52  E-value=4.2e-14  Score=131.44  Aligned_cols=115  Identities=19%  Similarity=0.308  Sum_probs=94.0

Q ss_pred             chhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEE
Q psy7829         115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIV  194 (511)
Q Consensus       115 ~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~  194 (511)
                      .+|.....+...+.  ..++.+|||+|||+|+.+..+++.. +.++|+++|+++.+++.|+++++..+    ..++++++
T Consensus        55 ~~~~~~~~l~~~~~--~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~v~~~  127 (232)
T 3ntv_A           55 VDRLTLDLIKQLIR--MNNVKNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLATYH----FENQVRII  127 (232)
T ss_dssp             CCHHHHHHHHHHHH--HHTCCEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHHTT----CTTTEEEE
T ss_pred             cCHHHHHHHHHHHh--hcCCCEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEE
Confidence            35656666666555  4578899999999999999999964 67899999999999999999998865    34589999


Q ss_pred             EccCCCCCC--CCCCccEEEecCCCCch---HHHHHhhcccCcEEEE
Q psy7829         195 EADAREGYL--PEAPYDVIYYGGCVSEV---PSRVLNQLKKGGRILA  236 (511)
Q Consensus       195 ~~d~~~~~~--~~~~fD~I~~~~~~~~~---~~~~~~~LkpgG~l~~  236 (511)
                      ++|+.+..+  ..++||+|+++......   .+.+.+.|||||++++
T Consensus       128 ~~d~~~~~~~~~~~~fD~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~  174 (232)
T 3ntv_A          128 EGNALEQFENVNDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVIT  174 (232)
T ss_dssp             ESCGGGCHHHHTTSCEEEEEEETTSSSHHHHHHHHGGGEEEEEEEEE
T ss_pred             ECCHHHHHHhhccCCccEEEEcCcHHHHHHHHHHHHHhcCCCeEEEE
Confidence            999976433  14789999999877654   4788899999999987

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.51  E-value=1.6e-13  Score=129.53  Aligned_cols=118  Identities=27%  Similarity=0.318  Sum_probs=98.5

Q ss_pred             chhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEE
Q psy7829         115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIV  194 (511)
Q Consensus       115 ~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~  194 (511)
                      ..|.....++..+.  +.++.+|||+|||+|.++..+++.+++.++|+++|+++.+++.|+++++.++    ..++++++
T Consensus        77 ~~~~~~~~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~----~~~~v~~~  150 (255)
T 3mb5_A           77 VHPKDAALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAG----FDDRVTIK  150 (255)
T ss_dssp             CCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHT----CTTTEEEE
T ss_pred             ccHhHHHHHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcC----CCCceEEE
Confidence            34555566677665  7889999999999999999999997678899999999999999999998865    23459999


Q ss_pred             EccCCCCCCCCCCccEEEecCCCCc-hHHHHHhhcccCcEEEEEEc
Q psy7829         195 EADAREGYLPEAPYDVIYYGGCVSE-VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       195 ~~d~~~~~~~~~~fD~I~~~~~~~~-~~~~~~~~LkpgG~l~~~~~  239 (511)
                      ++|+.+.+ +.++||+|+++.+... +.+++.+.|||||.+++...
T Consensus       151 ~~d~~~~~-~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  195 (255)
T 3mb5_A          151 LKDIYEGI-EEENVDHVILDLPQPERVVEHAAKALKPGGFFVAYTP  195 (255)
T ss_dssp             CSCGGGCC-CCCSEEEEEECSSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             ECchhhcc-CCCCcCEEEECCCCHHHHHHHHHHHcCCCCEEEEEEC
Confidence            99998754 3478999999877654 67999999999999998653

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.51  E-value=9.8e-14  Score=131.05  Aligned_cols=113  Identities=28%  Similarity=0.419  Sum_probs=93.3

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      ....+++.+. .+.++.+|||+|||+|..+..+++.. + ++|+++|+|+.+++.+++++...+    ..++++++++|+
T Consensus        33 ~~~~~l~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~  105 (257)
T 3f4k_A           33 ATRKAVSFIN-ELTDDAKIADIGCGTGGQTLFLADYV-K-GQITGIDLFPDFIEIFNENAVKAN----CADRVKGITGSM  105 (257)
T ss_dssp             HHHHHHTTSC-CCCTTCEEEEETCTTSHHHHHHHHHC-C-SEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEECCT
T ss_pred             HHHHHHHHHh-cCCCCCeEEEeCCCCCHHHHHHHHhC-C-CeEEEEECCHHHHHHHHHHHHHcC----CCCceEEEECCh
Confidence            4444555443 35678899999999999999999987 3 389999999999999999998865    345699999999


Q ss_pred             CCCCCCCCCccEEEecCCCCch-----HHHHHhhcccCcEEEEEE
Q psy7829         199 REGYLPEAPYDVIYYGGCVSEV-----PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       199 ~~~~~~~~~fD~I~~~~~~~~~-----~~~~~~~LkpgG~l~~~~  238 (511)
                      .....+.++||+|++..+++++     .+++.+.|||||++++..
T Consensus       106 ~~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          106 DNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSE  150 (257)
T ss_dssp             TSCSSCTTCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhCCCCCCCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEE
Confidence            7655456899999999888764     478999999999999864

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.51  E-value=8.2e-14  Score=132.45  Aligned_cols=113  Identities=24%  Similarity=0.339  Sum_probs=93.2

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      ....++..+. .+.++.+|||||||+|.++..+++.  +.++|+|+|+|+.+++.|++++...+    ..++++++++|+
T Consensus        33 ~~~~~l~~l~-~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~  105 (267)
T 3kkz_A           33 VTLKALSFID-NLTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSG----LQNRVTGIVGSM  105 (267)
T ss_dssp             HHHHHHTTCC-CCCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEECCT
T ss_pred             HHHHHHHhcc-cCCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcC----CCcCcEEEEcCh
Confidence            3444455443 3568899999999999999999987  45789999999999999999998865    345799999999


Q ss_pred             CCCCCCCCCccEEEecCCCCch-----HHHHHhhcccCcEEEEEE
Q psy7829         199 REGYLPEAPYDVIYYGGCVSEV-----PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       199 ~~~~~~~~~fD~I~~~~~~~~~-----~~~~~~~LkpgG~l~~~~  238 (511)
                      .+...+.++||+|++..+++++     ++++.+.|||||.+++..
T Consensus       106 ~~~~~~~~~fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  150 (267)
T 3kkz_A          106 DDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSE  150 (267)
T ss_dssp             TSCCCCTTCEEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             hhCCCCCCCEEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEE
Confidence            8755456889999999888664     478999999999999864

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.51  E-value=1.5e-13  Score=131.03  Aligned_cols=112  Identities=19%  Similarity=0.261  Sum_probs=92.5

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      +...+++.+.  +.++.+|||+|||+|.++..+++..  ..+|+++|+|+.+++.+++++...+    ..++++++.+|+
T Consensus        49 ~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~  120 (273)
T 3bus_A           49 LTDEMIALLD--VRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAG----LANRVTFSYADA  120 (273)
T ss_dssp             HHHHHHHHSC--CCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEECCT
T ss_pred             HHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcC----CCcceEEEECcc
Confidence            3344445443  5688999999999999999999876  4689999999999999999988764    345799999999


Q ss_pred             CCCCCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEE
Q psy7829         199 REGYLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       199 ~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~  238 (511)
                      .+...+.++||+|++..+++++      ++++.++|||||++++..
T Consensus       121 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~  166 (273)
T 3bus_A          121 MDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIAD  166 (273)
T ss_dssp             TSCCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ccCCCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            8755556789999999988765      378999999999999854

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.51  E-value=1.6e-13  Score=132.94  Aligned_cols=108  Identities=20%  Similarity=0.179  Sum_probs=90.4

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829         121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE  200 (511)
Q Consensus       121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  200 (511)
                      ..+++.+.  ++++.+|||||||+|.++..+++..+  .+|+++|+|+.+++.|++++...+    ..++++++++|+.+
T Consensus        62 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~  133 (302)
T 3hem_A           62 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVD----SPRRKEVRIQGWEE  133 (302)
T ss_dssp             HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSC----CSSCEEEEECCGGG
T ss_pred             HHHHHHcC--CCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEECCHHH
Confidence            33444443  67899999999999999999999873  689999999999999999998865    34589999999976


Q ss_pred             CCCCCCCccEEEecCCCCch---------------HHHHHhhcccCcEEEEEEc
Q psy7829         201 GYLPEAPYDVIYYGGCVSEV---------------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       201 ~~~~~~~fD~I~~~~~~~~~---------------~~~~~~~LkpgG~l~~~~~  239 (511)
                      .   .++||+|++..+++++               .+++.++|||||++++...
T Consensus       134 ~---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  184 (302)
T 3hem_A          134 F---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI  184 (302)
T ss_dssp             C---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred             c---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence            4   4889999999888666               4789999999999998543

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.51  E-value=1.3e-13  Score=126.64  Aligned_cols=115  Identities=25%  Similarity=0.262  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHh-hcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829         118 NQIADAAENLK-LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA  196 (511)
Q Consensus       118 ~~~~~~~~~l~-~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  196 (511)
                      .+.+.++..+. ..+++|.+|||+|||+|+.+..+++..++.++|+++|+++.+++...+.+..       ..|+.++++
T Consensus        60 kla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~-------r~nv~~i~~  132 (232)
T 3id6_C           60 KLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR-------RPNIFPLLA  132 (232)
T ss_dssp             HHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH-------CTTEEEEEC
T ss_pred             HHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-------cCCeEEEEc
Confidence            34555555553 2367999999999999999999999988899999999999997665554443       248999999


Q ss_pred             cCCCCC---CCCCCccEEEecCCCCchH----HHHHhhcccCcEEEEEEc
Q psy7829         197 DAREGY---LPEAPYDVIYYGGCVSEVP----SRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       197 d~~~~~---~~~~~fD~I~~~~~~~~~~----~~~~~~LkpgG~l~~~~~  239 (511)
                      |+....   ...++||+|+++.+.+...    ..+.+.|||||+|++++.
T Consensus       133 Da~~~~~~~~~~~~~D~I~~d~a~~~~~~il~~~~~~~LkpGG~lvisik  182 (232)
T 3id6_C          133 DARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIK  182 (232)
T ss_dssp             CTTCGGGTTTTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ccccchhhhccccceEEEEecCCChhHHHHHHHHHHHhCCCCeEEEEEEc
Confidence            987532   1236899999998775433    345569999999999764

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.51  E-value=1.9e-14  Score=135.35  Aligned_cols=102  Identities=24%  Similarity=0.175  Sum_probs=83.2

Q ss_pred             HHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC
Q psy7829         124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL  203 (511)
Q Consensus       124 ~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  203 (511)
                      ++.|......+.+|||||||+|..+..+++.+   .+|+|+|+|+.|++.|++           .++++++++|+.+...
T Consensus        30 ~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~---~~v~gvD~s~~ml~~a~~-----------~~~v~~~~~~~e~~~~   95 (257)
T 4hg2_A           30 FRWLGEVAPARGDALDCGCGSGQASLGLAEFF---ERVHAVDPGEAQIRQALR-----------HPRVTYAVAPAEDTGL   95 (257)
T ss_dssp             HHHHHHHSSCSSEEEEESCTTTTTHHHHHTTC---SEEEEEESCHHHHHTCCC-----------CTTEEEEECCTTCCCC
T ss_pred             HHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhC---CEEEEEeCcHHhhhhhhh-----------cCCceeehhhhhhhcc
Confidence            34444345567899999999999999999875   369999999999987642           3479999999987666


Q ss_pred             CCCCccEEEecCCCCch-----HHHHHhhcccCcEEEEEEc
Q psy7829         204 PEAPYDVIYYGGCVSEV-----PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       204 ~~~~fD~I~~~~~~~~~-----~~~~~~~LkpgG~l~~~~~  239 (511)
                      ++++||+|++..+++++     .+++.++|||||.|++...
T Consensus        96 ~~~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~~~  136 (257)
T 4hg2_A           96 PPASVDVAIAAQAMHWFDLDRFWAELRRVARPGAVFAAVTY  136 (257)
T ss_dssp             CSSCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCcccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEEEEEC
Confidence            67899999999998765     3789999999999988543

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.51  E-value=9e-14  Score=127.74  Aligned_cols=112  Identities=21%  Similarity=0.293  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc
Q psy7829         118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD  197 (511)
Q Consensus       118 ~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  197 (511)
                      .+...+++.+.  .+++ +|||+|||+|.++..+++.  +..+++++|+++.+++.|++++...+    ..++++++++|
T Consensus        31 ~~~~~~~~~~~--~~~~-~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~----~~~~~~~~~~d  101 (219)
T 3dlc_A           31 IIAENIINRFG--ITAG-TCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADAN----LNDRIQIVQGD  101 (219)
T ss_dssp             HHHHHHHHHHC--CCEE-EEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEECB
T ss_pred             HHHHHHHHhcC--CCCC-EEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhcc----ccCceEEEEcC
Confidence            34555555554  4455 9999999999999999997  45789999999999999999998865    34589999999


Q ss_pred             CCCCCCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEE
Q psy7829         198 AREGYLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       198 ~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~  238 (511)
                      +.+...+.++||+|+++.+++++      ++++.+.|||||.+++..
T Consensus       102 ~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A          102 VHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGG  148 (219)
T ss_dssp             TTBCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHCCCCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEe
Confidence            98755556889999999887654      478999999999999853

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.51  E-value=3.6e-14  Score=129.05  Aligned_cols=116  Identities=13%  Similarity=0.065  Sum_probs=85.2

Q ss_pred             hhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCC-------CcCCC
Q psy7829         116 APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK-------DLLDS  188 (511)
Q Consensus       116 ~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-------~~~~~  188 (511)
                      .|.+.. .++.+.  +.++.+|||+|||+|..+..+++..   .+|+|+|+|+.|++.|+++......       .....
T Consensus         8 ~~~l~~-~~~~l~--~~~~~~vLD~GCG~G~~~~~la~~g---~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~   81 (203)
T 1pjz_A            8 NKDLQQ-YWSSLN--VVPGARVLVPLCGKSQDMSWLSGQG---YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAA   81 (203)
T ss_dssp             THHHHH-HHHHHC--CCTTCEEEETTTCCSHHHHHHHHHC---CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEEC
T ss_pred             CHHHHH-HHHhcc--cCCCCEEEEeCCCCcHhHHHHHHCC---CeEEEEeCCHHHHHHHHHHccCCcccccccccccccC
Confidence            343433 344443  5688999999999999999999973   3799999999999999988643100       00013


Q ss_pred             CCeEEEEccCCCCCCCC-CCccEEEecCCCCch--------HHHHHhhcccCcEEEEE
Q psy7829         189 GRVRIVEADAREGYLPE-APYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       189 ~~v~~~~~d~~~~~~~~-~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~  237 (511)
                      .+++++++|+.+..... ++||+|++...++++        .+++.++|||||++++.
T Consensus        82 ~~v~~~~~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~  139 (203)
T 1pjz_A           82 PGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI  139 (203)
T ss_dssp             SSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred             CccEEEECccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            57999999998754433 689999988777554        36789999999985443

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.51  E-value=1e-13  Score=132.51  Aligned_cols=132  Identities=20%  Similarity=0.312  Sum_probs=101.8

Q ss_pred             CCCCcccccCCCcccchhHHHHHHHHHHhhcC-CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Q psy7829         100 PYQDVSASLGYAGVMNAPNQIADAAENLKLHL-VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNI  178 (511)
Q Consensus       100 ~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~-~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~  178 (511)
                      .|.+..+.+..+..+++|.....+...+. .+ .++.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.|++++
T Consensus        76 ~f~~~~~~~~~~~~ipr~~te~l~~~~l~-~~~~~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~  153 (276)
T 2b3t_A           76 EFWSLPLFVSPATLIPRPDTECLVEQALA-RLPEQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNA  153 (276)
T ss_dssp             EETTEEEECCTTSCCCCTTHHHHHHHHHH-HSCSSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHH
T ss_pred             EECCceEEeCCCCcccCchHHHHHHHHHH-hcccCCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH
Confidence            45666677677777777764433333332 22 567899999999999999999886 6789999999999999999999


Q ss_pred             hccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCCc-------------------------------hHHHHHhh
Q psy7829         179 SKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSE-------------------------------VPSRVLNQ  227 (511)
Q Consensus       179 ~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~-------------------------------~~~~~~~~  227 (511)
                      ..++     .++++++++|+.+... .++||+|+++.++..                               +.+.+.+.
T Consensus       154 ~~~~-----~~~v~~~~~d~~~~~~-~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~  227 (276)
T 2b3t_A          154 QHLA-----IKNIHILQSDWFSALA-GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNA  227 (276)
T ss_dssp             HHHT-----CCSEEEECCSTTGGGT-TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGG
T ss_pred             HHcC-----CCceEEEEcchhhhcc-cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHh
Confidence            8864     4479999999986443 468999999976521                               23677899


Q ss_pred             cccCcEEEEEEc
Q psy7829         228 LKKGGRILAPIG  239 (511)
Q Consensus       228 LkpgG~l~~~~~  239 (511)
                      |||||.+++.++
T Consensus       228 LkpgG~l~~~~~  239 (276)
T 2b3t_A          228 LVSGGFLLLEHG  239 (276)
T ss_dssp             EEEEEEEEEECC
T ss_pred             cCCCCEEEEEEC
Confidence            999999999754

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.50  E-value=1.5e-13  Score=127.55  Aligned_cols=102  Identities=25%  Similarity=0.374  Sum_probs=84.8

Q ss_pred             cCCCCCEEEEEcCC-ccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC-CCCCCC
Q psy7829         130 HLVDGAKVLDLGSG-SGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG-YLPEAP  207 (511)
Q Consensus       130 ~~~~~~~vLDiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~  207 (511)
                      .++++.+|||+||| +|.++..+++..  ..+|+++|+++.+++.|++++..++     . +++++++|+... ....++
T Consensus        52 ~~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-----~-~v~~~~~d~~~~~~~~~~~  123 (230)
T 3evz_A           52 FLRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNN-----S-NVRLVKSNGGIIKGVVEGT  123 (230)
T ss_dssp             TCCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTT-----C-CCEEEECSSCSSTTTCCSC
T ss_pred             hcCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhC-----C-CcEEEeCCchhhhhcccCc
Confidence            36789999999999 999999999986  5689999999999999999998864     3 899999996421 112478


Q ss_pred             ccEEEecCCCC-------------------------chHHHHHhhcccCcEEEEEEc
Q psy7829         208 YDVIYYGGCVS-------------------------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       208 fD~I~~~~~~~-------------------------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      ||+|+++.++.                         .+.+.+.+.|||||++++.+.
T Consensus       124 fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  180 (230)
T 3evz_A          124 FDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLP  180 (230)
T ss_dssp             EEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             eeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEec
Confidence            99999997763                         345788899999999998654

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.50  E-value=1.3e-13  Score=127.00  Aligned_cols=118  Identities=14%  Similarity=0.193  Sum_probs=90.6

Q ss_pred             hHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829         117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA  196 (511)
Q Consensus       117 p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  196 (511)
                      +.....+.+.+.  ..++.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.|++++...+.......+++++++
T Consensus        15 ~~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~   91 (219)
T 3jwg_A           15 QQRLGTVVAVLK--SVNAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQS   91 (219)
T ss_dssp             HHHHHHHHHHHH--HTTCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEEC
T ss_pred             HHHHHHHHHHHh--hcCCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeC
Confidence            344555666665  4578899999999999999999875 5679999999999999999998765310000127999999


Q ss_pred             cCCCCCCCCCCccEEEecCCCCchH--------HHHHhhcccCcEEEEE
Q psy7829         197 DAREGYLPEAPYDVIYYGGCVSEVP--------SRVLNQLKKGGRILAP  237 (511)
Q Consensus       197 d~~~~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~l~~~  237 (511)
                      |+.......++||+|++..+++++.        +++.+.|||||.++..
T Consensus        92 d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~  140 (219)
T 3jwg_A           92 SLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVST  140 (219)
T ss_dssp             CSSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred             cccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEc
Confidence            9865444457899999998876553        5688999999966553

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.50  E-value=2.2e-13  Score=124.93  Aligned_cols=102  Identities=16%  Similarity=0.208  Sum_probs=87.2

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC--CCCCCcc
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY--LPEAPYD  209 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD  209 (511)
                      .++.+|||+|||+|.++..+++.. |..+++|+|+++.+++.|++++...+     .++++++++|+.+..  .+.++||
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~D  113 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVG-----VPNIKLLWVDGSDLTDYFEDGEID  113 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHC-----CSSEEEEECCSSCGGGTSCTTCCS
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHHHHHcC-----CCCEEEEeCCHHHHHhhcCCCCCC
Confidence            467899999999999999999986 67899999999999999999998764     468999999998632  3457899


Q ss_pred             EEEecCCCC--------------chHHHHHhhcccCcEEEEEEc
Q psy7829         210 VIYYGGCVS--------------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       210 ~I~~~~~~~--------------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      +|+++.+.+              .+.+.+.+.|||||.+++...
T Consensus       114 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  157 (214)
T 1yzh_A          114 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD  157 (214)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred             EEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence            999997764              366889999999999998654

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.50  E-value=1.1e-13  Score=131.02  Aligned_cols=108  Identities=22%  Similarity=0.321  Sum_probs=90.1

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829         121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE  200 (511)
Q Consensus       121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  200 (511)
                      ..+++.+.  ..++.+|||+|||+|.++..+++.. +  +|+++|+|+.+++.|++++...+     .++++++++|+..
T Consensus        27 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~-~--~v~gvD~s~~~l~~a~~~~~~~~-----~~~v~~~~~d~~~   96 (260)
T 1vl5_A           27 AKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFV-K--KVVAFDLTEDILKVARAFIEGNG-----HQQVEYVQGDAEQ   96 (260)
T ss_dssp             HHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGS-S--EEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCC-C
T ss_pred             HHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhC-C--EEEEEeCCHHHHHHHHHHHHhcC-----CCceEEEEecHHh
Confidence            44566665  6788999999999999999999875 3  79999999999999999988753     4589999999987


Q ss_pred             CCCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEE
Q psy7829         201 GYLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       201 ~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~  238 (511)
                      ...++++||+|++..+++++      ++++.++|||||++++..
T Consensus        97 l~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~  140 (260)
T 1vl5_A           97 MPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVD  140 (260)
T ss_dssp             CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence            55556899999999888654      478999999999999853

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.50  E-value=1.9e-14  Score=139.87  Aligned_cols=178  Identities=14%  Similarity=0.117  Sum_probs=119.9

Q ss_pred             cCCCCCCCCcccCCCccHHHHHHHHHHcCCCCCH-HH-HHHHHhCCC-CCccCCCCCCCcccccCCCcccchhHHHHHHH
Q psy7829          48 VIPPPDNLNHFKNEGTCQTDLVNHLRDIGKIRTE-RV-AQAFYKVDR-GNFANEEPYQDVSASLGYAGVMNAPNQIADAA  124 (511)
Q Consensus        48 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~-~~a~~~~~r-~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~  124 (511)
                      ...+++..+++|+...+..++.+.|...|+...+ .+ ..++..... ..+.....|..       |....+......+.
T Consensus        39 ~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------G~~~~qd~~s~l~~  111 (315)
T 1ixk_A           39 MEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFCLTREPFSITSTPEFLT-------GLIYIQEASSMYPP  111 (315)
T ss_dssp             TTSCCCCEEEECTTTSCHHHHHHHHHHTTCEEEEETTEEEEEEEEECSSCGGGSHHHHT-------TSEEECCHHHHHHH
T ss_pred             cCCCCCeEEEEeCCCCCHHHHHHHHHhCCCeeeECCCCCceEEEeCCCCCcccChhHhc-------ceEEEeCHHHHHHH
Confidence            4455667889999999999999999888752110 00 000000000 00000111222       11111221222233


Q ss_pred             HHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCC
Q psy7829         125 ENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLP  204 (511)
Q Consensus       125 ~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  204 (511)
                      ..+.  +.++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.++++++++|     ..+++++++|+......
T Consensus       112 ~~l~--~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g-----~~~v~~~~~D~~~~~~~  184 (315)
T 1ixk_A          112 VALD--PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG-----VLNVILFHSSSLHIGEL  184 (315)
T ss_dssp             HHHC--CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT-----CCSEEEESSCGGGGGGG
T ss_pred             HHhC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhC-----CCeEEEEECChhhcccc
Confidence            4444  7789999999999999999999987666899999999999999999998864     45799999998764333


Q ss_pred             CCCccEEEecCCCC----------------------------chHHHHHhhcccCcEEEEEEc
Q psy7829         205 EAPYDVIYYGGCVS----------------------------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       205 ~~~fD~I~~~~~~~----------------------------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      .++||+|+++.++.                            .+++++.+.|||||+++++.-
T Consensus       185 ~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stc  247 (315)
T 1ixk_A          185 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC  247 (315)
T ss_dssp             CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             cccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            46899999987652                            344678899999999998643

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.50  E-value=1.6e-13  Score=128.10  Aligned_cols=113  Identities=22%  Similarity=0.322  Sum_probs=93.8

Q ss_pred             hHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829         117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA  196 (511)
Q Consensus       117 p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  196 (511)
                      +.....+++.+.  ++++.+|||+|||+|.++..+++.. +  +|+++|+++.+++.+++++...+     .++++++++
T Consensus         7 ~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~   76 (239)
T 1xxl_A            7 HHSLGLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYV-Q--ECIGVDATKEMVEVASSFAQEKG-----VENVRFQQG   76 (239)
T ss_dssp             HHHHHHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGS-S--EEEEEESCHHHHHHHHHHHHHHT-----CCSEEEEEC
T ss_pred             CCCcchHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhC-C--EEEEEECCHHHHHHHHHHHHHcC-----CCCeEEEec
Confidence            334455677776  7899999999999999999999875 3  79999999999999999988753     458999999


Q ss_pred             cCCCCCCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEEc
Q psy7829         197 DAREGYLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       197 d~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~  239 (511)
                      |+......+++||+|++..+++++      +.++.++|||||.+++...
T Consensus        77 d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  125 (239)
T 1xxl_A           77 TAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH  125 (239)
T ss_dssp             BTTBCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccCCCCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEc
Confidence            998755456889999999887654      4789999999999998543

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.50  E-value=5.7e-14  Score=127.97  Aligned_cols=109  Identities=17%  Similarity=0.214  Sum_probs=89.0

Q ss_pred             HHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCC
Q psy7829         125 ENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLP  204 (511)
Q Consensus       125 ~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  204 (511)
                      +.+...++++.+|||||||+|++++.+++.. +..+|+++|+++.+++.|++|++.+|    ..++++++.+|+.+..++
T Consensus         7 ~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~g----l~~~i~~~~~d~l~~l~~   81 (225)
T 3kr9_A            7 ELVASFVSQGAILLDVGSDHAYLPIELVERG-QIKSAIAGEVVEGPYQSAVKNVEAHG----LKEKIQVRLANGLAAFEE   81 (225)
T ss_dssp             HHHHTTSCTTEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTT----CTTTEEEEECSGGGGCCG
T ss_pred             HHHHHhCCCCCEEEEeCCCcHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC----CCceEEEEECchhhhccc
Confidence            3444457789999999999999999999974 77899999999999999999999986    345799999999776554


Q ss_pred             CCCccEEEecCCC----CchHHHHHhhcccCcEEEEEE
Q psy7829         205 EAPYDVIYYGGCV----SEVPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       205 ~~~fD~I~~~~~~----~~~~~~~~~~LkpgG~l~~~~  238 (511)
                      ..+||+|++..+-    ..++....+.|+|+|++++.-
T Consensus        82 ~~~~D~IviaG~Gg~~i~~Il~~~~~~L~~~~~lVlq~  119 (225)
T 3kr9_A           82 TDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQP  119 (225)
T ss_dssp             GGCCCEEEEEEECHHHHHHHHHHTGGGCTTCCEEEEEE
T ss_pred             CcCCCEEEEcCCChHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            3379998876543    445677888999999999853

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.49  E-value=2.1e-13  Score=131.80  Aligned_cols=114  Identities=18%  Similarity=0.093  Sum_probs=93.7

Q ss_pred             HHHHHHHHHh--hcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829         119 QIADAAENLK--LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA  196 (511)
Q Consensus       119 ~~~~~~~~l~--~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  196 (511)
                      ....+++.+.  ..+.++.+|||+|||+|..+..+++..+  .+|+++|+|+.+++.|++++...+    ..++++++++
T Consensus        66 ~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~----~~~~~~~~~~  139 (297)
T 2o57_A           66 TDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAG----LADNITVKYG  139 (297)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHT----CTTTEEEEEC
T ss_pred             HHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcC----CCcceEEEEc
Confidence            4455666661  0267889999999999999999999863  489999999999999999987764    3468999999


Q ss_pred             cCCCCCCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEE
Q psy7829         197 DAREGYLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       197 d~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~  238 (511)
                      |+.+.+.++++||+|++..+++++      ++++.++|||||++++..
T Consensus       140 d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  187 (297)
T 2o57_A          140 SFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITD  187 (297)
T ss_dssp             CTTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcccCCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            998755556889999999887654      478999999999999854

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.49  E-value=1.8e-13  Score=131.11  Aligned_cols=125  Identities=27%  Similarity=0.377  Sum_probs=103.0

Q ss_pred             CcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhcc-CCCcCCCC
Q psy7829         111 AGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKG-NKDLLDSG  189 (511)
Q Consensus       111 ~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~~~~  189 (511)
                      ...+..|.....++..+.  +.++.+|||+|||+|.++..+++..++.++|+++|+++.+++.|++++... +.   ..+
T Consensus        79 ~~~~~~~~~~~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~---~~~  153 (280)
T 1i9g_A           79 GPQVIYPKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ---PPD  153 (280)
T ss_dssp             CSCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS---CCT
T ss_pred             cceeecHHHHHHHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC---CCC
Confidence            444556777777777776  788999999999999999999998777889999999999999999998764 20   245


Q ss_pred             CeEEEEccCCCCCCCCCCccEEEecCCCC-chHHHHHhhcccCcEEEEEEcc
Q psy7829         190 RVRIVEADAREGYLPEAPYDVIYYGGCVS-EVPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       190 ~v~~~~~d~~~~~~~~~~fD~I~~~~~~~-~~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      +++++++|+.+...+.++||+|+++.+-. .+.+++.+.|+|||.+++.+..
T Consensus       154 ~v~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  205 (280)
T 1i9g_A          154 NWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVAT  205 (280)
T ss_dssp             TEEEECSCGGGCCCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred             cEEEEECchHhcCCCCCceeEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            89999999987544457899999987654 5678999999999999997653

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.49  E-value=1.3e-13  Score=129.33  Aligned_cols=117  Identities=18%  Similarity=0.124  Sum_probs=84.9

Q ss_pred             hhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhc----------cCCCc
Q psy7829         116 APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISK----------GNKDL  185 (511)
Q Consensus       116 ~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~----------~~~~~  185 (511)
                      .|.+...+...+.  ..++.+|||+|||+|..+..|++..   .+|+|+|+|+.+++.|+++...          .+...
T Consensus        53 ~~~l~~~~~~~~~--~~~~~~vLD~GCG~G~~~~~La~~G---~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~  127 (252)
T 2gb4_A           53 HQLLKKHLDTFLK--GQSGLRVFFPLCGKAIEMKWFADRG---HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKV  127 (252)
T ss_dssp             CHHHHHHHHHHHT--TCCSCEEEETTCTTCTHHHHHHHTT---CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEE
T ss_pred             CHHHHHHHHHhcc--CCCCCeEEEeCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHhcccccccccccccccccc
Confidence            3444444433332  3578899999999999999999873   3799999999999999877531          00000


Q ss_pred             --CCCCCeEEEEccCCCCCCC-CCCccEEEecCCCCch--------HHHHHhhcccCcEEEEE
Q psy7829         186 --LDSGRVRIVEADAREGYLP-EAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       186 --~~~~~v~~~~~d~~~~~~~-~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~  237 (511)
                        -...+++++++|+.+.... .++||+|++...+.++        .+++.++|||||++++.
T Consensus       128 ~~~~~~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~  190 (252)
T 2gb4_A          128 FKSSSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA  190 (252)
T ss_dssp             EEETTSSEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cccCCCceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence              0135799999999875443 2789999988777544        36789999999999753

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.48  E-value=2.6e-13  Score=121.82  Aligned_cols=117  Identities=15%  Similarity=0.029  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHhhc-CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829         118 NQIADAAENLKLH-LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA  196 (511)
Q Consensus       118 ~~~~~~~~~l~~~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  196 (511)
                      .+...+++.+... ..++.+|||+|||+|.++..++..  ...+|+++|+|+.+++.|+++++.++     .++++++++
T Consensus        28 ~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~v~~~~~  100 (189)
T 3p9n_A           28 RVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSR--GAASVLFVESDQRSAAVIARNIEALG-----LSGATLRRG  100 (189)
T ss_dssp             HHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEECCHHHHHHHHHHHHHHT-----CSCEEEEES
T ss_pred             HHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHC--CCCeEEEEECCHHHHHHHHHHHHHcC-----CCceEEEEc
Confidence            3555566666532 147889999999999999988775  34689999999999999999998864     368999999


Q ss_pred             cCCCCC--CCCCCccEEEecCCCCch-------HHHHHh--hcccCcEEEEEEccC
Q psy7829         197 DAREGY--LPEAPYDVIYYGGCVSEV-------PSRVLN--QLKKGGRILAPIGPM  241 (511)
Q Consensus       197 d~~~~~--~~~~~fD~I~~~~~~~~~-------~~~~~~--~LkpgG~l~~~~~~~  241 (511)
                      |+.+..  ...++||+|+++.++++.       ...+.+  +|||||.+++.....
T Consensus       101 d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~  156 (189)
T 3p9n_A          101 AVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATT  156 (189)
T ss_dssp             CHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred             cHHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence            987532  124789999999888752       356777  999999999976543

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.48  E-value=2.3e-13  Score=124.20  Aligned_cols=100  Identities=22%  Similarity=0.233  Sum_probs=80.6

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC---CCCCCC
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG---YLPEAP  207 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~  207 (511)
                      ++++.+|||+|||+|..+..+++..+ .++|+|+|+|+.+++.+.+.++.       ..++.++.+|+...   .+..++
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~-------~~~v~~~~~d~~~~~~~~~~~~~  126 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRE-------RNNIIPLLFDASKPWKYSGIVEK  126 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHH-------CSSEEEECSCTTCGGGTTTTCCC
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhc-------CCCeEEEEcCCCCchhhcccccc
Confidence            56889999999999999999999875 67999999999988777666654       23789999998753   122378


Q ss_pred             ccEEEecCCCCc----hHHHHHhhcccCcEEEEEE
Q psy7829         208 YDVIYYGGCVSE----VPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       208 fD~I~~~~~~~~----~~~~~~~~LkpgG~l~~~~  238 (511)
                      ||+|+++...+.    +++++.+.|||||++++.+
T Consensus       127 fD~V~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          127 VDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeEEEEeccChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence            999999854432    2478899999999999975

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.48  E-value=8.4e-14  Score=127.01  Aligned_cols=109  Identities=17%  Similarity=0.241  Sum_probs=89.3

Q ss_pred             HHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCC
Q psy7829         125 ENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLP  204 (511)
Q Consensus       125 ~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  204 (511)
                      +.+...++++.+|||||||+|++++.+++.. +..+|+++|+++.+++.|++|++.++    ..++++++++|+.+.+.+
T Consensus        13 ~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~AvDi~~~al~~A~~N~~~~g----l~~~I~~~~gD~l~~~~~   87 (230)
T 3lec_A           13 QKVANYVPKGARLLDVGSDHAYLPIFLLQMG-YCDFAIAGEVVNGPYQSALKNVSEHG----LTSKIDVRLANGLSAFEE   87 (230)
T ss_dssp             HHHHTTSCTTEEEEEETCSTTHHHHHHHHTT-CEEEEEEEESSHHHHHHHHHHHHHTT----CTTTEEEEECSGGGGCCG
T ss_pred             HHHHHhCCCCCEEEEECCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEECchhhcccc
Confidence            3444457789999999999999999999974 77789999999999999999999986    356799999999886654


Q ss_pred             CCCccEEEecCCC----CchHHHHHhhcccCcEEEEEE
Q psy7829         205 EAPYDVIYYGGCV----SEVPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       205 ~~~fD~I~~~~~~----~~~~~~~~~~LkpgG~l~~~~  238 (511)
                      ...||+|++.++-    ..++....+.|+++|+|++.-
T Consensus        88 ~~~~D~IviaGmGg~lI~~IL~~~~~~l~~~~~lIlqp  125 (230)
T 3lec_A           88 ADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVLQP  125 (230)
T ss_dssp             GGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred             ccccCEEEEeCCchHHHHHHHHHHHHHhCcCCEEEEEC
Confidence            4479998866553    344567778899999998853

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.48  E-value=1e-13  Score=127.26  Aligned_cols=102  Identities=19%  Similarity=0.231  Sum_probs=86.1

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC---CCCCCCc
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG---YLPEAPY  208 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~f  208 (511)
                      .++.+|||||||+|.++..+|+.. +...|+|+|+|+.+++.|++++...+     .+|++++++|+.+.   ..+.++|
T Consensus        33 ~~~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~~~-----l~nv~~~~~Da~~~l~~~~~~~~~  106 (218)
T 3dxy_A           33 REAPVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHEEG-----LSNLRVMCHDAVEVLHKMIPDNSL  106 (218)
T ss_dssp             SCCCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHTT-----CSSEEEECSCHHHHHHHHSCTTCE
T ss_pred             CCCCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHHhC-----CCcEEEEECCHHHHHHHHcCCCCh
Confidence            467899999999999999999986 77899999999999999999998753     56899999998753   1345899


Q ss_pred             cEEEecCCCC--------------chHHHHHhhcccCcEEEEEEc
Q psy7829         209 DVIYYGGCVS--------------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       209 D~I~~~~~~~--------------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      |.|+++.+.+              .+.+.+.+.|||||.+++.+.
T Consensus       107 d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td  151 (218)
T 3dxy_A          107 RMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD  151 (218)
T ss_dssp             EEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred             heEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence            9999984432              256889999999999999765

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.48  E-value=2.5e-13  Score=127.51  Aligned_cols=103  Identities=18%  Similarity=0.280  Sum_probs=85.9

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC---CCCCCC
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG---YLPEAP  207 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~  207 (511)
                      ..++.+|||||||+|+.+..+++.+++.++|+++|+++.+++.|++++...+    ..++++++++|+.+.   ....++
T Consensus        61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g----~~~~v~~~~~d~~~~l~~~~~~~~  136 (248)
T 3tfw_A           61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAG----VDQRVTLREGPALQSLESLGECPA  136 (248)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTT----CTTTEEEEESCHHHHHHTCCSCCC
T ss_pred             hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEcCHHHHHHhcCCCCC
Confidence            4578899999999999999999988557899999999999999999998865    345899999998642   222358


Q ss_pred             ccEEEecCCCCc---hHHHHHhhcccCcEEEEE
Q psy7829         208 YDVIYYGGCVSE---VPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       208 fD~I~~~~~~~~---~~~~~~~~LkpgG~l~~~  237 (511)
                      ||+|+++.....   +.+++.+.|||||.+++.
T Consensus       137 fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~  169 (248)
T 3tfw_A          137 FDLIFIDADKPNNPHYLRWALRYSRPGTLIIGD  169 (248)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred             eEEEEECCchHHHHHHHHHHHHhcCCCeEEEEe
Confidence            999999887654   347889999999999874

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.47  E-value=6.1e-13  Score=125.62  Aligned_cols=122  Identities=26%  Similarity=0.285  Sum_probs=100.6

Q ss_pred             cccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhcc-CCCcCCCCC
Q psy7829         112 GVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKG-NKDLLDSGR  190 (511)
Q Consensus       112 ~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~~~~~  190 (511)
                      .....|.....+++.+.  +.++.+|||+|||+|.++..+++.+++..+|+++|+++.+++.|+++++.+ +     .++
T Consensus        77 ~~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-----~~~  149 (258)
T 2pwy_A           77 ATPTYPKDASAMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-----VEN  149 (258)
T ss_dssp             SCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-----CCC
T ss_pred             cccccchHHHHHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-----CCC
Confidence            33445556666777765  788999999999999999999999767789999999999999999998874 3     358


Q ss_pred             eEEEEccCCCCCCCCCCccEEEecCCCC-chHHHHHhhcccCcEEEEEEcc
Q psy7829         191 VRIVEADAREGYLPEAPYDVIYYGGCVS-EVPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       191 v~~~~~d~~~~~~~~~~fD~I~~~~~~~-~~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      ++++.+|+.+...+.++||+|+++.+.. .+++++.+.|||||.+++....
T Consensus       150 v~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  200 (258)
T 2pwy_A          150 VRFHLGKLEEAELEEAAYDGVALDLMEPWKVLEKAALALKPDRFLVAYLPN  200 (258)
T ss_dssp             EEEEESCGGGCCCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESC
T ss_pred             EEEEECchhhcCCCCCCcCEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            9999999987533447899999987654 5779999999999999997653

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.47  E-value=2.8e-13  Score=126.04  Aligned_cols=100  Identities=19%  Similarity=0.292  Sum_probs=86.0

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ..++.+|||+|||+|..+..+++.. +..+++++|+|+.+++.|++++...       .+++++++|+.+.... ++||+
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~d~~~~~~~-~~fD~  112 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRGN-------LKVKYIEADYSKYDFE-EKYDM  112 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCSC-------TTEEEEESCTTTCCCC-SCEEE
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhccC-------CCEEEEeCchhccCCC-CCceE
Confidence            4578899999999999999999986 6789999999999999999997653       2899999999875544 88999


Q ss_pred             EEecCCCCch--------HHHHHhhcccCcEEEEEEc
Q psy7829         211 IYYGGCVSEV--------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       211 I~~~~~~~~~--------~~~~~~~LkpgG~l~~~~~  239 (511)
                      |++..+++++        ++++.+.|||||.+++...
T Consensus       113 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  149 (234)
T 3dtn_A          113 VVSALSIHHLEDEDKKELYKRSYSILKESGIFINADL  149 (234)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            9999887654        4678999999999998654

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.47  E-value=1.6e-13  Score=130.22  Aligned_cols=109  Identities=19%  Similarity=0.326  Sum_probs=90.6

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      ....+++.+.  +.++.+|||+|||+|.++..+++.+  ..+|+++|+|+.+++.|+++...      . ++++++++|+
T Consensus        43 ~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~------~-~~~~~~~~d~  111 (266)
T 3ujc_A           43 ATKKILSDIE--LNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSG------N-NKIIFEANDI  111 (266)
T ss_dssp             HHHHHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCS------C-TTEEEEECCT
T ss_pred             HHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhc------C-CCeEEEECcc
Confidence            3344444443  5688999999999999999999986  46899999999999999988654      1 5899999999


Q ss_pred             CCCCCCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEEE
Q psy7829         199 REGYLPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       199 ~~~~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~~  238 (511)
                      .....+.++||+|++..+++++        ++++.+.|||||.+++..
T Consensus       112 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  159 (266)
T 3ujc_A          112 LTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITD  159 (266)
T ss_dssp             TTCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            8755556899999999988877        378999999999999864

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.47  E-value=2.7e-13  Score=124.12  Aligned_cols=102  Identities=18%  Similarity=0.268  Sum_probs=85.5

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC--CCCCCcc
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY--LPEAPYD  209 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD  209 (511)
                      .++.+|||||||+|.++..+++.. +..+|+|+|+|+.+++.|++++...+     .+|++++++|+....  .+.++||
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~~-----~~nv~~~~~d~~~l~~~~~~~~~d  110 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSE-----AQNVKLLNIDADTLTDVFEPGEVK  110 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSC-----CSSEEEECCCGGGHHHHCCTTSCC
T ss_pred             CCCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHcC-----CCCEEEEeCCHHHHHhhcCcCCcC
Confidence            467899999999999999999986 77899999999999999999998753     568999999987522  2357899


Q ss_pred             EEEecCCCC--------------chHHHHHhhcccCcEEEEEEc
Q psy7829         210 VIYYGGCVS--------------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       210 ~I~~~~~~~--------------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      .|+++.+.+              .+++++.+.|||||.+++.+.
T Consensus       111 ~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td  154 (213)
T 2fca_A          111 RVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD  154 (213)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred             EEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence            999875543              246889999999999998764

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.47  E-value=2.9e-13  Score=131.69  Aligned_cols=103  Identities=17%  Similarity=0.136  Sum_probs=87.9

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      +.++.+|||+|||+|.++..+++..  ..+|+|+|+++.+++.|++++...+    ..++++++++|+.+...+.++||+
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~fD~  188 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELR----IDDHVRSRVCNMLDTPFDKGAVTA  188 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEECCTTSCCCCTTCEEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcC----CCCceEEEECChhcCCCCCCCEeE
Confidence            4578899999999999999999986  3589999999999999999998865    345899999999875545689999


Q ss_pred             EEecCCCCch-----HHHHHhhcccCcEEEEEEc
Q psy7829         211 IYYGGCVSEV-----PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       211 I~~~~~~~~~-----~~~~~~~LkpgG~l~~~~~  239 (511)
                      |++..+++++     ++++.+.|||||++++...
T Consensus       189 V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~  222 (312)
T 3vc1_A          189 SWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITG  222 (312)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence            9998877554     4789999999999998643

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.46  E-value=1.2e-13  Score=126.93  Aligned_cols=108  Identities=11%  Similarity=0.186  Sum_probs=88.7

Q ss_pred             HHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCC
Q psy7829         125 ENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLP  204 (511)
Q Consensus       125 ~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  204 (511)
                      +.+...++++.+|||||||+|++++.+++.. +..+|+++|+++.+++.|++|++.+|    ..++++++++|+.+.+.+
T Consensus        13 ~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~g----l~~~I~v~~gD~l~~~~~   87 (244)
T 3gnl_A           13 EKVASYITKNERIADIGSDHAYLPCFAVKNQ-TASFAIAGEVVDGPFQSAQKQVRSSG----LTEQIDVRKGNGLAVIEK   87 (244)
T ss_dssp             HHHHTTCCSSEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTT----CTTTEEEEECSGGGGCCG
T ss_pred             HHHHHhCCCCCEEEEECCccHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC----CCceEEEEecchhhccCc
Confidence            3444457889999999999999999999974 77789999999999999999999976    345799999999876654


Q ss_pred             CCCccEEEecCCC----CchHHHHHhhcccCcEEEEE
Q psy7829         205 EAPYDVIYYGGCV----SEVPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       205 ~~~fD~I~~~~~~----~~~~~~~~~~LkpgG~l~~~  237 (511)
                      ..+||+|++..+-    ..++....+.|+++++|++.
T Consensus        88 ~~~~D~IviagmGg~lI~~IL~~~~~~L~~~~~lIlq  124 (244)
T 3gnl_A           88 KDAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLILQ  124 (244)
T ss_dssp             GGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEE
T ss_pred             cccccEEEEeCCchHHHHHHHHHHHHHhCCCCEEEEE
Confidence            3469998875543    34557778899999999885

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.46  E-value=1.2e-13  Score=127.48  Aligned_cols=114  Identities=16%  Similarity=0.249  Sum_probs=87.7

Q ss_pred             hHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829         117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA  196 (511)
Q Consensus       117 p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  196 (511)
                      |.....+...+.  ..++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.|+++++.++    ..++++++++
T Consensus        44 ~~~~~~l~~l~~--~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~v~~~~~  117 (221)
T 3u81_A           44 DAKGQIMDAVIR--EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAG----LQDKVTILNG  117 (221)
T ss_dssp             HHHHHHHHHHHH--HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT----CGGGEEEEES
T ss_pred             HHHHHHHHHHHH--hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcC----CCCceEEEEC
Confidence            434343333333  4467899999999999999999987567899999999999999999998865    3457999999


Q ss_pred             cCCCCCC--C----CCCccEEEecCCCCchH------HHHHhhcccCcEEEEE
Q psy7829         197 DAREGYL--P----EAPYDVIYYGGCVSEVP------SRVLNQLKKGGRILAP  237 (511)
Q Consensus       197 d~~~~~~--~----~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~l~~~  237 (511)
                      |+.+..+  .    .++||+|+++...++..      ..+ ++|||||.+++.
T Consensus       118 d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~  169 (221)
T 3u81_A          118 ASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLAD  169 (221)
T ss_dssp             CHHHHGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEES
T ss_pred             CHHHHHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEe
Confidence            9753211  1    16899999998776554      223 899999999884

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.46  E-value=3.3e-14  Score=135.57  Aligned_cols=175  Identities=18%  Similarity=0.110  Sum_probs=116.2

Q ss_pred             CCCCCCcccCCCccHHHHHHHHHHcCCCCCHHHH-HHHHhCCC-CCccCCCCCCCcccccCCCcccchhHHHHHHHHHHh
Q psy7829          51 PPDNLNHFKNEGTCQTDLVNHLRDIGKIRTERVA-QAFYKVDR-GNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLK  128 (511)
Q Consensus        51 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~a~~~~~r-~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~  128 (511)
                      +....++.|+...+..++.+.|...|+...+.+. .++...++ ..+.....|..+.+.++....       ..+...+.
T Consensus         8 ~~~~~~rvn~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s-------~l~~~~l~   80 (274)
T 3ajd_A            8 EKMQFIRVNTLKINPEVLKKRLENKGVVLEKTFLDYAFEVKKSPFSIGSTPEYLFGYYMPQSISS-------MIPPIVLN   80 (274)
T ss_dssp             -CCEEEEECTTTCCHHHHHHHHHTTTCEEEECSSTTEEEEEECSSCTTSSHHHHTTSEEECCSGG-------GHHHHHHC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHHCCCeecCCCCCceEEEecCCCCcccChhhhCCeEEEeCHHH-------HHHHHHhC
Confidence            3456778888889999999999887752111000 00000000 000011122222222221111       12233444


Q ss_pred             hcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC----C
Q psy7829         129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL----P  204 (511)
Q Consensus       129 ~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~  204 (511)
                        ..++.+|||+|||+|..+..+++.....++|+++|+++.+++.++++++..|     ..+++++++|+.....    .
T Consensus        81 --~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g-----~~~v~~~~~D~~~~~~~~~~~  153 (274)
T 3ajd_A           81 --PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMG-----VLNTIIINADMRKYKDYLLKN  153 (274)
T ss_dssp             --CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEESCHHHHHHHHHHT
T ss_pred             --CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhC-----CCcEEEEeCChHhcchhhhhc
Confidence              6789999999999999999999987445899999999999999999999864     4589999999865322    1


Q ss_pred             CCCccEEEecCCCC------------------------chHHHHHhhcccCcEEEEEEc
Q psy7829         205 EAPYDVIYYGGCVS------------------------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       205 ~~~fD~I~~~~~~~------------------------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      .++||+|+++.++.                        .+++.+.+.|||||+++++..
T Consensus       154 ~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stc  212 (274)
T 3ajd_A          154 EIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTC  212 (274)
T ss_dssp             TCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             cccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence            46899999997663                        234678889999999998754

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.46  E-value=9.1e-14  Score=129.29  Aligned_cols=116  Identities=16%  Similarity=0.237  Sum_probs=89.1

Q ss_pred             CCcccch-hHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHH---hCCCceEEEEeCCHHHHHHHHHHHhccCCCc
Q psy7829         110 YAGVMNA-PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHM---VGPTGKVIGVEHIPELIEASLRNISKGNKDL  185 (511)
Q Consensus       110 ~~~~~~~-p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~  185 (511)
                      .+..+++ |.....+.+.+.  ..++.+|||||||+|+.+..+++.   +++.++|+++|+++.+++.|+.         
T Consensus        59 ~~~~~~~~p~~~~~l~~~l~--~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~---------  127 (236)
T 2bm8_A           59 RGLRMLKDPDTQAVYHDMLW--ELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS---------  127 (236)
T ss_dssp             TTEECCSCHHHHHHHHHHHH--HHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG---------
T ss_pred             ccccccCCHHHHHHHHHHHH--hcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc---------
Confidence            3455666 877777777665  345789999999999999999997   4577899999999999988761         


Q ss_pred             CCCCCeEEEEccCCCC--C--CCCCCccEEEecCCCCc---hHHHHHh-hcccCcEEEEE
Q psy7829         186 LDSGRVRIVEADAREG--Y--LPEAPYDVIYYGGCVSE---VPSRVLN-QLKKGGRILAP  237 (511)
Q Consensus       186 ~~~~~v~~~~~d~~~~--~--~~~~~fD~I~~~~~~~~---~~~~~~~-~LkpgG~l~~~  237 (511)
                       ..++++++++|+.+.  +  ....+||+|+++..-..   ++.++.+ +|||||++++.
T Consensus       128 -~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~  186 (236)
T 2bm8_A          128 -DMENITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIE  186 (236)
T ss_dssp             -GCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEEC
T ss_pred             -cCCceEEEECcchhHHHHHhhccCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEEEEE
Confidence             134799999999864  1  12247999998876333   3466775 99999999983

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.45  E-value=1.9e-13  Score=128.03  Aligned_cols=103  Identities=21%  Similarity=0.301  Sum_probs=85.4

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-------
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-------  203 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-------  203 (511)
                      ..++.+|||||||+|+.+..+++.+++.++|+++|+++.+++.|+++++..+    ..++++++.+|+.+..+       
T Consensus        77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g----~~~~i~~~~gda~~~l~~l~~~~~  152 (247)
T 1sui_A           77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG----VDHKIDFREGPALPVLDEMIKDEK  152 (247)
T ss_dssp             HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT----CGGGEEEEESCHHHHHHHHHHSGG
T ss_pred             hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCCeEEEECCHHHHHHHHHhccC
Confidence            4567899999999999999999998557899999999999999999998865    34579999999864221       


Q ss_pred             CCCCccEEEecCCCCc---hHHHHHhhcccCcEEEEE
Q psy7829         204 PEAPYDVIYYGGCVSE---VPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       204 ~~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~l~~~  237 (511)
                      ..++||+|+++.....   +.+.+.+.|||||.+++.
T Consensus       153 ~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d  189 (247)
T 1sui_A          153 NHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYD  189 (247)
T ss_dssp             GTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             CCCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEe
Confidence            1378999999876543   347889999999999873

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.45  E-value=1.8e-13  Score=126.40  Aligned_cols=103  Identities=20%  Similarity=0.318  Sum_probs=84.9

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCC-----C
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLP-----E  205 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-----~  205 (511)
                      ..++.+|||+|||+|+.+..+++.+++.++|+++|+++.+++.|++++...+    ..++++++++|+.+..+.     .
T Consensus        56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~~  131 (223)
T 3duw_A           56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERAN----LNDRVEVRTGLALDSLQQIENEKY  131 (223)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEESCHHHHHHHHHHTTC
T ss_pred             hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEcCHHHHHHHHHhcCC
Confidence            4578899999999999999999998547899999999999999999998865    345699999998642211     1


Q ss_pred             CCccEEEecCCCCc---hHHHHHhhcccCcEEEEE
Q psy7829         206 APYDVIYYGGCVSE---VPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       206 ~~fD~I~~~~~~~~---~~~~~~~~LkpgG~l~~~  237 (511)
                      ++||+|+++.....   +.+.+.+.|||||.+++.
T Consensus       132 ~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~  166 (223)
T 3duw_A          132 EPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGD  166 (223)
T ss_dssp             CCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred             CCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEe
Confidence            57999999887654   347889999999988874

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.45  E-value=1.3e-13  Score=128.17  Aligned_cols=117  Identities=17%  Similarity=0.267  Sum_probs=95.5

Q ss_pred             cchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEE
Q psy7829         114 MNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI  193 (511)
Q Consensus       114 ~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~  193 (511)
                      +.+|.....+...+.  ..++.+|||+|||+|..+..+++.+ +.++|+++|+++.+++.|++++...+    ..+++++
T Consensus        37 ~~~~~~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~v~~  109 (233)
T 2gpy_A           37 IMDLLGMESLLHLLK--MAAPARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALG----LESRIEL  109 (233)
T ss_dssp             CCCHHHHHHHHHHHH--HHCCSEEEEECCTTSHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHHTT----CTTTEEE
T ss_pred             CcCHHHHHHHHHHHh--ccCCCEEEEecCCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEE
Confidence            456666666666665  5578899999999999999999987 57899999999999999999998864    2357999


Q ss_pred             EEccCCCCCC-C--CCCccEEEecCCCCc---hHHHHHhhcccCcEEEEE
Q psy7829         194 VEADAREGYL-P--EAPYDVIYYGGCVSE---VPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       194 ~~~d~~~~~~-~--~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~l~~~  237 (511)
                      +.+|+.+..+ .  .++||+|+++.+.+.   +.+.+.+.|||||.+++.
T Consensus       110 ~~~d~~~~~~~~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          110 LFGDALQLGEKLELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             ECSCGGGSHHHHTTSCCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EECCHHHHHHhcccCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            9999876322 1  368999999988753   447889999999999985

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.45  E-value=3e-14  Score=133.09  Aligned_cols=103  Identities=17%  Similarity=0.243  Sum_probs=86.4

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCC------
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLP------  204 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~------  204 (511)
                      ..++.+|||+|||+|+.+..+++.+++.++|+++|+++.+++.|+++++..+    ..++++++++|+.+..+.      
T Consensus        58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g----~~~~i~~~~gda~~~l~~~~~~~~  133 (242)
T 3r3h_A           58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAK----QEHKIKLRLGPALDTLHSLLNEGG  133 (242)
T ss_dssp             HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTT----CTTTEEEEESCHHHHHHHHHHHHC
T ss_pred             hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEcCHHHHHHHHhhccC
Confidence            4467899999999999999999988558899999999999999999999875    346899999998653221      


Q ss_pred             CCCccEEEecCCCCch---HHHHHhhcccCcEEEEE
Q psy7829         205 EAPYDVIYYGGCVSEV---PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       205 ~~~fD~I~~~~~~~~~---~~~~~~~LkpgG~l~~~  237 (511)
                      .++||+|+++......   .+.+.+.|||||.+++.
T Consensus       134 ~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d  169 (242)
T 3r3h_A          134 EHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAID  169 (242)
T ss_dssp             SSCEEEEEEESCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCEeEEEEcCChHHhHHHHHHHHHhcCCCeEEEEE
Confidence            3789999998875443   47889999999999984

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.45  E-value=7e-13  Score=131.31  Aligned_cols=121  Identities=21%  Similarity=0.103  Sum_probs=98.6

Q ss_pred             ccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeE
Q psy7829         113 VMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVR  192 (511)
Q Consensus       113 ~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~  192 (511)
                      ....+.+.+.++..+.  ..++.+|||+|||+|.+++.++...++..+++|+|+++.+++.|++|++.+|     .++++
T Consensus       185 a~l~~~la~~l~~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g-----~~~i~  257 (354)
T 3tma_A          185 GSLTPVLAQALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASG-----LSWIR  257 (354)
T ss_dssp             CSCCHHHHHHHHHHTT--CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTT-----CTTCE
T ss_pred             CCcCHHHHHHHHHHhC--CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcC-----CCceE
Confidence            3345556666666665  6788999999999999999999987567889999999999999999999875     33899


Q ss_pred             EEEccCCCCCCCCCCccEEEecCCCC--------------chHHHHHhhcccCcEEEEEEcc
Q psy7829         193 IVEADAREGYLPEAPYDVIYYGGCVS--------------EVPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       193 ~~~~d~~~~~~~~~~fD~I~~~~~~~--------------~~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      +.++|+.+.......||+|++++++.              .+.+.+.+.|||||.+++....
T Consensus       258 ~~~~D~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~  319 (354)
T 3tma_A          258 FLRADARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR  319 (354)
T ss_dssp             EEECCGGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred             EEeCChhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            99999987544446799999998873              2336788999999999997653

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.45  E-value=1.5e-13  Score=132.37  Aligned_cols=106  Identities=23%  Similarity=0.273  Sum_probs=82.6

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCC--------------------------
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKD--------------------------  184 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--------------------------  184 (511)
                      ..++.+|||||||+|.++..+++.+ +..+|+|+|+++.+++.|++++...+..                          
T Consensus        44 ~~~~~~VLDiGCG~G~~~~~la~~~-~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (292)
T 3g07_A           44 WFRGRDVLDLGCNVGHLTLSIACKW-GPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRK  122 (292)
T ss_dssp             GTTTSEEEEESCTTCHHHHHHHHHT-CCSEEEEEESCHHHHHHHHHTC--------------------------------
T ss_pred             hcCCCcEEEeCCCCCHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence            3468899999999999999999997 5579999999999999999987653200                          


Q ss_pred             ---------------------------cCCCCCeEEEEccCCCCC-----CCCCCccEEEecCCCCch------------
Q psy7829         185 ---------------------------LLDSGRVRIVEADAREGY-----LPEAPYDVIYYGGCVSEV------------  220 (511)
Q Consensus       185 ---------------------------~~~~~~v~~~~~d~~~~~-----~~~~~fD~I~~~~~~~~~------------  220 (511)
                                                 .....+++|+++|+....     ...++||+|++..+++++            
T Consensus       123 ~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~  202 (292)
T 3g07_A          123 RSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRM  202 (292)
T ss_dssp             -------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHH
Confidence                                       000158999999987543     235789999999887443            


Q ss_pred             HHHHHhhcccCcEEEEE
Q psy7829         221 PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       221 ~~~~~~~LkpgG~l~~~  237 (511)
                      ++++.++|||||+|++.
T Consensus       203 l~~~~~~LkpGG~lil~  219 (292)
T 3g07_A          203 FRRIYRHLRPGGILVLE  219 (292)
T ss_dssp             HHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHhCCCcEEEEe
Confidence            47889999999999985

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.44  E-value=7.2e-13  Score=126.58  Aligned_cols=117  Identities=28%  Similarity=0.380  Sum_probs=97.8

Q ss_pred             hhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEE
Q psy7829         116 APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE  195 (511)
Q Consensus       116 ~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  195 (511)
                      .|.....++..+.  +.++.+|||+|||+|.++..+++.+++.++|+++|+++.+++.|++++...+    ..++++++.
T Consensus        97 ~~~~~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~v~~~~  170 (277)
T 1o54_A           97 YPKDSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG----LIERVTIKV  170 (277)
T ss_dssp             CHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT----CGGGEEEEC
T ss_pred             CHHHHHHHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC----CCCCEEEEE
Confidence            4445566666665  7789999999999999999999986678899999999999999999998754    235899999


Q ss_pred             ccCCCCCCCCCCccEEEecCCCC-chHHHHHhhcccCcEEEEEEc
Q psy7829         196 ADAREGYLPEAPYDVIYYGGCVS-EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       196 ~d~~~~~~~~~~fD~I~~~~~~~-~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      +|+.+.+ +.++||+|+++.+.. .+.+++.+.|+|||.+++...
T Consensus       171 ~d~~~~~-~~~~~D~V~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (277)
T 1o54_A          171 RDISEGF-DEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCP  214 (277)
T ss_dssp             CCGGGCC-SCCSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred             CCHHHcc-cCCccCEEEECCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            9988753 346899999987665 567899999999999999765

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.44  E-value=8.8e-13  Score=126.69  Aligned_cols=99  Identities=19%  Similarity=0.172  Sum_probs=84.4

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      +.++.+|||||||+|.++..+++..+  .+|+++|+|+.+++.+++++...+    ..++++++.+|+.+..   ++||+
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~~~---~~fD~  132 (287)
T 1kpg_A           62 LQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSE----NLRSKRVLLAGWEQFD---EPVDR  132 (287)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCC----CCSCEEEEESCGGGCC---CCCSE
T ss_pred             CCCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcC----CCCCeEEEECChhhCC---CCeeE
Confidence            56889999999999999999997763  389999999999999999988754    3468999999986532   78999


Q ss_pred             EEecCCCCch--------HHHHHhhcccCcEEEEEE
Q psy7829         211 IYYGGCVSEV--------PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       211 I~~~~~~~~~--------~~~~~~~LkpgG~l~~~~  238 (511)
                      |++..+++++        .+++.++|||||.+++..
T Consensus       133 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  168 (287)
T 1kpg_A          133 IVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT  168 (287)
T ss_dssp             EEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            9999887665        378899999999999854

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.44  E-value=4.3e-13  Score=128.63  Aligned_cols=114  Identities=18%  Similarity=0.283  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc
Q psy7829         118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD  197 (511)
Q Consensus       118 ~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  197 (511)
                      .....+++.+. .+.++.+|||+|||+|..+..+++.+++..+|+++|+|+.+++.|++++...+      .+++++++|
T Consensus         8 ~~~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------~~v~~~~~d   80 (284)
T 3gu3_A            8 DYVSFLVNTVW-KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP------YDSEFLEGD   80 (284)
T ss_dssp             HHHHHHHHTTS-CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS------SEEEEEESC
T ss_pred             HHHHHHHHHHh-ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC------CceEEEEcc
Confidence            34555555543 35678999999999999999999987435799999999999999999988742      389999999


Q ss_pred             CCCCCCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEEc
Q psy7829         198 AREGYLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       198 ~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~  239 (511)
                      +.+... .++||+|++...++++      .+++.+.|||||.+++...
T Consensus        81 ~~~~~~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  127 (284)
T 3gu3_A           81 ATEIEL-NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEP  127 (284)
T ss_dssp             TTTCCC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             hhhcCc-CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEec
Confidence            987444 4789999999887654      3789999999999998543

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.44  E-value=5.3e-13  Score=129.04  Aligned_cols=103  Identities=17%  Similarity=0.190  Sum_probs=87.1

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhcc-CCCcCCCCCeEEEEccCCCCCCCC----
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKG-NKDLLDSGRVRIVEADAREGYLPE----  205 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~~~~~v~~~~~d~~~~~~~~----  205 (511)
                      ..++.+|||+|||+|..+..+++.+.+..+|+|+|+|+.+++.|++++... +    ..++++++++|+.+.....    
T Consensus        34 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~  109 (299)
T 3g5t_A           34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPD----TYKNVSFKISSSDDFKFLGADSV  109 (299)
T ss_dssp             CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-----CCTTEEEEECCTTCCGGGCTTTT
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccC----CCCceEEEEcCHHhCCccccccc
Confidence            457899999999999999999987646789999999999999999998874 2    3568999999998644333    


Q ss_pred             --CCccEEEecCCCCch-----HHHHHhhcccCcEEEEE
Q psy7829         206 --APYDVIYYGGCVSEV-----PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       206 --~~fD~I~~~~~~~~~-----~~~~~~~LkpgG~l~~~  237 (511)
                        ++||+|++..+++++     .+++.+.|||||.+++.
T Consensus       110 ~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i~  148 (299)
T 3g5t_A          110 DKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAIW  148 (299)
T ss_dssp             TSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEEE
Confidence              789999999887653     47899999999999883

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.44  E-value=8.2e-13  Score=121.27  Aligned_cols=107  Identities=21%  Similarity=0.290  Sum_probs=87.1

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829         121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE  200 (511)
Q Consensus       121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  200 (511)
                      ..+++.+. ...++.+|||+|||+|.++..+++.   ..+|+++|+++.+++.+++   .      ..++++++++|+.+
T Consensus        35 ~~~~~~l~-~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~---~------~~~~~~~~~~d~~~  101 (218)
T 3ou2_A           35 PAALERLR-AGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGR---H------GLDNVEFRQQDLFD  101 (218)
T ss_dssp             HHHHHHHT-TTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGG---G------CCTTEEEEECCTTS
T ss_pred             HHHHHHHh-cCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHh---c------CCCCeEEEeccccc
Confidence            34555554 3567789999999999999999998   3479999999999999987   1      34689999999987


Q ss_pred             CCCCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEEEccC
Q psy7829         201 GYLPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       201 ~~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~~~~~  241 (511)
                      . ...++||+|+++..++++        ++++.+.|||||.+++.....
T Consensus       102 ~-~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  149 (218)
T 3ou2_A          102 W-TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTD  149 (218)
T ss_dssp             C-CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             C-CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            6 456899999999888654        367889999999999976544

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.44  E-value=5.7e-13  Score=127.90  Aligned_cols=102  Identities=20%  Similarity=0.250  Sum_probs=85.4

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC-CCCCCcc
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY-LPEAPYD  209 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD  209 (511)
                      ..++.+|||+|||+|.++..+++.   ..+|+++|+|+.+++.|++++...+    ..++++++++|+.+.. ...++||
T Consensus        66 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~fD  138 (285)
T 4htf_A           66 GPQKLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKG----VSDNMQFIHCAAQDVASHLETPVD  138 (285)
T ss_dssp             CSSCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-C----CGGGEEEEESCGGGTGGGCSSCEE
T ss_pred             CCCCCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcC----CCcceEEEEcCHHHhhhhcCCCce
Confidence            345789999999999999999987   3479999999999999999998764    2368999999998654 3458899


Q ss_pred             EEEecCCCCch------HHHHHhhcccCcEEEEEEc
Q psy7829         210 VIYYGGCVSEV------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       210 ~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~  239 (511)
                      +|++..+++++      ++++.++|||||.+++...
T Consensus       139 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A          139 LILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            99999888654      4789999999999998654

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.44  E-value=1.3e-12  Score=120.68  Aligned_cols=110  Identities=21%  Similarity=0.258  Sum_probs=88.9

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829         121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE  200 (511)
Q Consensus       121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  200 (511)
                      ..+.+.+...+.++.+|||+|||+|.++..+++.. +  +++++|+++.+++.|++++...      ..+++++++|+.+
T Consensus        26 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~d~~~   96 (227)
T 1ve3_A           26 ETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG-F--EVVGVDISEDMIRKAREYAKSR------ESNVEFIVGDARK   96 (227)
T ss_dssp             HHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTT-C--EEEEEESCHHHHHHHHHHHHHT------TCCCEEEECCTTS
T ss_pred             HHHHHHHHHhcCCCCeEEEEeccCCHHHHHHHHcC-C--EEEEEECCHHHHHHHHHHHHhc------CCCceEEECchhc
Confidence            33455555456678999999999999999999875 4  8999999999999999998764      2579999999887


Q ss_pred             CCCCCCCccEEEecCC--CCc------hHHHHHhhcccCcEEEEEEc
Q psy7829         201 GYLPEAPYDVIYYGGC--VSE------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       201 ~~~~~~~fD~I~~~~~--~~~------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      ...+.++||+|+++.+  ..+      +.+++.+.|||||.+++...
T Consensus        97 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  143 (227)
T 1ve3_A           97 LSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT  143 (227)
T ss_dssp             CCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence            4444578999999988  443      34788999999999998654

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.44  E-value=3.9e-13  Score=128.35  Aligned_cols=103  Identities=26%  Similarity=0.387  Sum_probs=89.3

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      +.++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.+++++...+     .++++++.+|+.....+.++||+
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~fD~  108 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEKNG-----IKNVKFLQANIFSLPFEDSSFDH  108 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCGGGCCSCTTCEEE
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC-----CCCcEEEEcccccCCCCCCCeeE
Confidence            4688999999999999999999985 77899999999999999999988753     45899999999875555689999


Q ss_pred             EEecCCCCch------HHHHHhhcccCcEEEEEEc
Q psy7829         211 IYYGGCVSEV------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       211 I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~  239 (511)
                      |++..+++++      ++++.+.|||||.+++...
T Consensus       109 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  143 (276)
T 3mgg_A          109 IFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEG  143 (276)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence            9999887654      4789999999999998653

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.44  E-value=2.6e-13  Score=123.13  Aligned_cols=118  Identities=16%  Similarity=0.082  Sum_probs=88.0

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      +...+++.+... .++.+|||+|||+|.++..++...  ..+|+++|+|+.+++.|+++++.++.   ..++++++++|+
T Consensus        40 ~~~~l~~~l~~~-~~~~~vLDlGcGtG~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~---~~~~v~~~~~d~  113 (201)
T 2ift_A           40 VKETLFNWLMPY-IHQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQTLKC---SSEQAEVINQSS  113 (201)
T ss_dssp             HHHHHHHHHHHH-HTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTC---CTTTEEEECSCH
T ss_pred             HHHHHHHHHHHh-cCCCeEEEcCCccCHHHHHHHHcc--CCEEEEEECCHHHHHHHHHHHHHhCC---CccceEEEECCH
Confidence            444555555411 267899999999999999877763  35899999999999999999988641   116899999998


Q ss_pred             CCCCC--CCCC-ccEEEecCCCC-----chHHHH--HhhcccCcEEEEEEccCC
Q psy7829         199 REGYL--PEAP-YDVIYYGGCVS-----EVPSRV--LNQLKKGGRILAPIGPMD  242 (511)
Q Consensus       199 ~~~~~--~~~~-fD~I~~~~~~~-----~~~~~~--~~~LkpgG~l~~~~~~~~  242 (511)
                      .+...  ..++ ||+|+++.+++     .+.+.+  .++|||||.+++......
T Consensus       114 ~~~~~~~~~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          114 LDFLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             HHHTTSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             HHHHHhhccCCCCCEEEECCCCCCccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            65322  2468 99999998854     223455  456999999999876544

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.44  E-value=6.3e-13  Score=126.81  Aligned_cols=112  Identities=18%  Similarity=0.215  Sum_probs=89.6

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhcc-CCCcCCCCCeEEEEccCC
Q psy7829         121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKG-NKDLLDSGRVRIVEADAR  199 (511)
Q Consensus       121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~~~~~v~~~~~d~~  199 (511)
                      ..+++.+.  +.++.+|||+|||+|.++..+++...+..+|+++|+++.+++.|++++..+ +     .++++++++|+.
T Consensus       100 ~~~~~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g-----~~~v~~~~~d~~  172 (275)
T 1yb2_A          100 SYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD-----IGNVRTSRSDIA  172 (275)
T ss_dssp             ------CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC-----CTTEEEECSCTT
T ss_pred             HHHHHHcC--CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CCcEEEEECchh
Confidence            34445444  678899999999999999999998657789999999999999999999874 3     458999999998


Q ss_pred             CCCCCCCCccEEEecCCCC-chHHHHHhhcccCcEEEEEEcc
Q psy7829         200 EGYLPEAPYDVIYYGGCVS-EVPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       200 ~~~~~~~~fD~I~~~~~~~-~~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      +.+ +.++||+|+++.+-. .+++++.+.|||||++++....
T Consensus       173 ~~~-~~~~fD~Vi~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  213 (275)
T 1yb2_A          173 DFI-SDQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLPN  213 (275)
T ss_dssp             TCC-CSCCEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred             ccC-cCCCccEEEEcCcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            743 347899999976543 4678999999999999997653

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.43  E-value=6.3e-13  Score=131.93  Aligned_cols=113  Identities=17%  Similarity=0.200  Sum_probs=90.5

Q ss_pred             HHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC
Q psy7829         122 DAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG  201 (511)
Q Consensus       122 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  201 (511)
                      .+++.+.  ..++.+|||+|||+|.++..+++.. |..+|+++|+|+.+++.|++++..++..  ...+++|+.+|+.+.
T Consensus       213 ~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~ngl~--~~~~v~~~~~D~~~~  287 (375)
T 4dcm_A          213 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPE--ALDRCEFMINNALSG  287 (375)
T ss_dssp             HHHHTCC--CSCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCGG--GGGGEEEEECSTTTT
T ss_pred             HHHHhCc--ccCCCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHHcCCC--cCceEEEEechhhcc
Confidence            3455443  4456899999999999999999986 7789999999999999999999886520  112689999999875


Q ss_pred             CCCCCCccEEEecCCCCc-----------hHHHHHhhcccCcEEEEEEcc
Q psy7829         202 YLPEAPYDVIYYGGCVSE-----------VPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       202 ~~~~~~fD~I~~~~~~~~-----------~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      + +.++||+|+++.+++.           +.+++.+.|||||.+++....
T Consensus       288 ~-~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~  336 (375)
T 4dcm_A          288 V-EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR  336 (375)
T ss_dssp             C-CTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             C-CCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence            4 3478999999988752           357889999999999997653

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.43  E-value=5.2e-13  Score=123.50  Aligned_cols=92  Identities=20%  Similarity=0.282  Sum_probs=80.0

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC-CC-CCCc
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY-LP-EAPY  208 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~-~~~f  208 (511)
                      +.++.+|||+|||+|.++..+++.   ..+|+++|+|+.+++.++++.          ++++++++|+.+.. .. .++|
T Consensus        46 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~----------~~~~~~~~d~~~~~~~~~~~~f  112 (226)
T 3m33_A           46 LTPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARANA----------PHADVYEWNGKGELPAGLGAPF  112 (226)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHC----------TTSEEEECCSCSSCCTTCCCCE
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHhC----------CCceEEEcchhhccCCcCCCCE
Confidence            578899999999999999999987   348999999999999999882          26899999995433 33 5789


Q ss_pred             cEEEecCCCCchHHHHHhhcccCcEEE
Q psy7829         209 DVIYYGGCVSEVPSRVLNQLKKGGRIL  235 (511)
Q Consensus       209 D~I~~~~~~~~~~~~~~~~LkpgG~l~  235 (511)
                      |+|+++.....+++++.+.|||||.++
T Consensus       113 D~v~~~~~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          113 GLIVSRRGPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             EEEEEESCCSGGGGGHHHHEEEEEEEE
T ss_pred             EEEEeCCCHHHHHHHHHHHcCCCcEEE
Confidence            999999888888899999999999998

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.43  E-value=8.5e-13  Score=118.41  Aligned_cols=117  Identities=24%  Similarity=0.269  Sum_probs=94.4

Q ss_pred             cchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEE
Q psy7829         114 MNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI  193 (511)
Q Consensus       114 ~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~  193 (511)
                      .+.+.+...+++.+.  ..++.+|||+|||+|.++..+++..   .+|+++|+++.+++.+++++...+    ..+++++
T Consensus        16 ~~~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~----~~~~~~~   86 (192)
T 1l3i_A           16 PTAMEVRCLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHG----LGDNVTL   86 (192)
T ss_dssp             CCCHHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTT----CCTTEEE
T ss_pred             CChHHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcC----CCcceEE
Confidence            345556666777775  7789999999999999999999875   589999999999999999998764    2368999


Q ss_pred             EEccCCCCCCCCCCccEEEecCCCCch---HHHHHhhcccCcEEEEEEc
Q psy7829         194 VEADAREGYLPEAPYDVIYYGGCVSEV---PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       194 ~~~d~~~~~~~~~~fD~I~~~~~~~~~---~~~~~~~LkpgG~l~~~~~  239 (511)
                      +++|+.+.....++||+|+++.+++++   .+.+.+.|+|||.+++...
T Consensus        87 ~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~  135 (192)
T 1l3i_A           87 MEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAI  135 (192)
T ss_dssp             EESCHHHHHTTSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EecCHHHhcccCCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            999986533222589999999876554   4788999999999998654

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.43  E-value=3.1e-13  Score=131.03  Aligned_cols=107  Identities=20%  Similarity=0.241  Sum_probs=89.1

Q ss_pred             hhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCC
Q psy7829         128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAP  207 (511)
Q Consensus       128 ~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  207 (511)
                      ...+.++.+|||+|||+|..+..++....+..+|+++|+|+.+++.|++++...+    ..++++++++|+.+...+ ++
T Consensus       113 ~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~-~~  187 (305)
T 3ocj_A          113 QRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA----LAGQITLHRQDAWKLDTR-EG  187 (305)
T ss_dssp             HHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTST----TGGGEEEEECCGGGCCCC-SC
T ss_pred             HhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcC----CCCceEEEECchhcCCcc-CC
Confidence            3347889999999999999999986434477899999999999999999998764    244699999999875545 89


Q ss_pred             ccEEEecCCCCch---------HHHHHhhcccCcEEEEEEc
Q psy7829         208 YDVIYYGGCVSEV---------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       208 fD~I~~~~~~~~~---------~~~~~~~LkpgG~l~~~~~  239 (511)
                      ||+|+++.+++++         .+++.+.|||||++++...
T Consensus       188 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  228 (305)
T 3ocj_A          188 YDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFL  228 (305)
T ss_dssp             EEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             eEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            9999998877653         4788999999999998543

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.43  E-value=4.8e-13  Score=126.38  Aligned_cols=106  Identities=20%  Similarity=0.252  Sum_probs=86.6

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhc---cCCCcCCCCCeEEEEccCCCCC-----
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISK---GNKDLLDSGRVRIVEADAREGY-----  202 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~---~~~~~~~~~~v~~~~~d~~~~~-----  202 (511)
                      ..++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++++..   ++    ..++++++++|+.+..     
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~~~~~~----l~~~v~~~~~D~~~~~~~~~~  108 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAA----FSARIEVLEADVTLRAKARVE  108 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTSGGGTT----TGGGEEEEECCTTCCHHHHHH
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhhhhCC----CcceEEEEeCCHHHHhhhhhh
Confidence            4577899999999999999999986 678999999999999999999887   54    2347999999998641     


Q ss_pred             --CCCCCccEEEecCCCCc------------------------hHHHHHhhcccCcEEEEEEccC
Q psy7829         203 --LPEAPYDVIYYGGCVSE------------------------VPSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       203 --~~~~~fD~I~~~~~~~~------------------------~~~~~~~~LkpgG~l~~~~~~~  241 (511)
                        ...++||+|++++++..                        +.+.+.++|||||++++.....
T Consensus       109 ~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  173 (260)
T 2ozv_A          109 AGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ  173 (260)
T ss_dssp             TTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred             hccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH
Confidence              23478999999976632                        2467789999999999976543

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.43  E-value=3.6e-14  Score=130.02  Aligned_cols=122  Identities=21%  Similarity=0.305  Sum_probs=74.0

Q ss_pred             CCcccchhHH---HHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcC
Q psy7829         110 YAGVMNAPNQ---IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLL  186 (511)
Q Consensus       110 ~~~~~~~p~~---~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~  186 (511)
                      .+..+++|..   ...+++.+. ...++.+|||+|||+|.++..+++.. +..+++++|+++.+++.|++++..++    
T Consensus         5 ~~~~~p~~~~~~~~~~~~~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~----   78 (215)
T 4dzr_A            5 PDCLIPRPDTEVLVEEAIRFLK-RMPSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAERFG----   78 (215)
T ss_dssp             GGGGSCCHHHHHHHHHHHHHHT-TCCTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC-------------------
T ss_pred             CCccCCCccHHHHHHHHHHHhh-hcCCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhC----
Confidence            3445555543   333444443 12678899999999999999999986 67899999999999999999988753    


Q ss_pred             CCCCeEEEEccCCCCCCC----CCCccEEEecCCCCc--------------------------------hHHHHHhhccc
Q psy7829         187 DSGRVRIVEADAREGYLP----EAPYDVIYYGGCVSE--------------------------------VPSRVLNQLKK  230 (511)
Q Consensus       187 ~~~~v~~~~~d~~~~~~~----~~~fD~I~~~~~~~~--------------------------------~~~~~~~~Lkp  230 (511)
                       . +++++++|+.+.+..    .++||+|+++.++..                                +.+++.+.|||
T Consensus        79 -~-~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp  156 (215)
T 4dzr_A           79 -A-VVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLAR  156 (215)
T ss_dssp             ------CCHHHHHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCS
T ss_pred             -C-ceEEEEcchHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcC
Confidence             2 789999998762221    278999999877622                                22456689999


Q ss_pred             CcE-EEEEEc
Q psy7829         231 GGR-ILAPIG  239 (511)
Q Consensus       231 gG~-l~~~~~  239 (511)
                      ||+ +++.+.
T Consensus       157 gG~l~~~~~~  166 (215)
T 4dzr_A          157 GRAGVFLEVG  166 (215)
T ss_dssp             SSEEEEEECT
T ss_pred             CCeEEEEEEC
Confidence            999 665443

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.43  E-value=7.1e-13  Score=123.89  Aligned_cols=106  Identities=18%  Similarity=0.212  Sum_probs=87.4

Q ss_pred             HHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC
Q psy7829         124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL  203 (511)
Q Consensus       124 ~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  203 (511)
                      ++.+...++++.+|||+|||+|.++..+++.   ..+|+++|+++.+++.++++..        ..+++++++|+.....
T Consensus        44 ~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~~d~~~~~~  112 (242)
T 3l8d_A           44 IPFFEQYVKKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERGE--------GPDLSFIKGDLSSLPF  112 (242)
T ss_dssp             HHHHHHHSCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTTC--------BTTEEEEECBTTBCSS
T ss_pred             HHHHHHHcCCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhcc--------cCCceEEEcchhcCCC
Confidence            3444444678899999999999999999987   3479999999999999988742        3479999999987555


Q ss_pred             CCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEEcc
Q psy7829         204 PEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       204 ~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~~  240 (511)
                      +.++||+|++..+++++      ++++.+.|||||.+++....
T Consensus       113 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  155 (242)
T 3l8d_A          113 ENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILG  155 (242)
T ss_dssp             CTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcC
Confidence            56899999999988754      47899999999999997643

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.43  E-value=8e-13  Score=134.93  Aligned_cols=177  Identities=15%  Similarity=0.155  Sum_probs=117.9

Q ss_pred             cCCCCCCCCcccCCCccHHHHHHHHHHcCCCCCH-HH-HHHHHhCCCC-----CccCCCCCCCcccccCCCcccchhHHH
Q psy7829          48 VIPPPDNLNHFKNEGTCQTDLVNHLRDIGKIRTE-RV-AQAFYKVDRG-----NFANEEPYQDVSASLGYAGVMNAPNQI  120 (511)
Q Consensus        48 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~-~~a~~~~~r~-----~~~~~~~y~~~~~~~~~~~~~~~p~~~  120 (511)
                      ...++...+++|+...+..++.+.|...|+...+ .+ ..++. ++..     .+.....|..+.+.+       +....
T Consensus        33 ~~~~~p~~lRvN~lk~~~~~~~~~L~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~G~~~~-------Qd~~s  104 (479)
T 2frx_A           33 CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPIPWCEEGFW-IERDNEDALPLGSTAEHLSGLFYI-------QEASS  104 (479)
T ss_dssp             HTSCCCCCEEECTTTCCHHHHHHHHGGGCCCCCEETTEEEEEC----------CGGGSHHHHTTSEEE-------CCHHH
T ss_pred             cCCCCCEEEEEeCCCCCHHHHHHHHHHcCCceeecCCCCceEE-EecCcccccCcccChHHhCcEEEE-------ECHHH
Confidence            3445667889999999999999999877752111 00 00000 0000     000011122211111       11111


Q ss_pred             HHHHHHHhhcCC--CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         121 ADAAENLKLHLV--DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       121 ~~~~~~l~~~~~--~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      ..+...+.  ..  ++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.+++|++++|     ..++.++++|+
T Consensus       105 ~l~~~~L~--~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g-----~~nv~~~~~D~  177 (479)
T 2frx_A          105 MLPVAALF--ADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCG-----ISNVALTHFDG  177 (479)
T ss_dssp             HHHHHHHT--TTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHT-----CCSEEEECCCS
T ss_pred             HHHHHHhC--cccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEeCCH
Confidence            12234444  45  89999999999999999999998667899999999999999999999864     55899999998


Q ss_pred             CCCCC-CCCCccEEEecCCCC----------------------------chHHHHHhhcccCcEEEEEEc
Q psy7829         199 REGYL-PEAPYDVIYYGGCVS----------------------------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       199 ~~~~~-~~~~fD~I~~~~~~~----------------------------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      ..... ..++||+|++++++.                            .++.++.++|||||+|+++..
T Consensus       178 ~~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc  247 (479)
T 2frx_A          178 RVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC  247 (479)
T ss_dssp             TTHHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             HHhhhhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence            75322 236899999987762                            134567899999999998743

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.42  E-value=1.1e-12  Score=131.20  Aligned_cols=122  Identities=19%  Similarity=0.229  Sum_probs=94.1

Q ss_pred             cCCCcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHH-------HHHHhc
Q psy7829         108 LGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEAS-------LRNISK  180 (511)
Q Consensus       108 ~~~~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a-------~~~~~~  180 (511)
                      ..++..+  |.+.+.+++.+.  +.++.+|||+|||+|.++..+++.. +..+|+|+|+++.+++.|       ++++..
T Consensus       221 ~~yGet~--p~~v~~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~-g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~  295 (433)
T 1u2z_A          221 YVYGELL--PNFLSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALEC-GCALSFGCEIMDDASDLTILQYEELKKRCKL  295 (433)
T ss_dssp             GCCCCBC--HHHHHHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHH-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccc--HHHHHHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHhHHHHHHHHHH
Confidence            3444444  778888888876  7889999999999999999999987 446899999999999998       888877


Q ss_pred             cCCCcCCCCCeEEEEccCCCC-CC---CCCCccEEEecCCCC-----chHHHHHhhcccCcEEEEE
Q psy7829         181 GNKDLLDSGRVRIVEADAREG-YL---PEAPYDVIYYGGCVS-----EVPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       181 ~~~~~~~~~~v~~~~~d~~~~-~~---~~~~fD~I~~~~~~~-----~~~~~~~~~LkpgG~l~~~  237 (511)
                      .|   +...+++++++|.... +.   ..++||+|+++..+.     ..+.++.++|||||++++.
T Consensus       296 ~G---l~~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~  358 (433)
T 1u2z_A          296 YG---MRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISL  358 (433)
T ss_dssp             TT---BCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             cC---CCCCceEEEEcCccccccccccccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEe
Confidence            54   1146899999875432 11   136899999875542     1236899999999999985

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.42  E-value=3.2e-13  Score=126.55  Aligned_cols=103  Identities=20%  Similarity=0.210  Sum_probs=86.2

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC---CCCCc
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL---PEAPY  208 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~f  208 (511)
                      .++.+|||||||+|..++.++... +..+|+++|+++.+++.|++++..++     ..|++++++|+.+...   ..++|
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-----l~~v~~~~~d~~~~~~~~~~~~~f  152 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEVLG-----LKGARALWGRAEVLAREAGHREAY  152 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHT-----CSSEEEEECCHHHHTTSTTTTTCE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhC-----CCceEEEECcHHHhhcccccCCCc
Confidence            467899999999999999999986 77899999999999999999998864     4579999999875332   23789


Q ss_pred             cEEEecCCC--CchHHHHHhhcccCcEEEEEEcc
Q psy7829         209 DVIYYGGCV--SEVPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       209 D~I~~~~~~--~~~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      |+|++....  ..+.+.+.++|||||++++..+.
T Consensus       153 D~I~s~a~~~~~~ll~~~~~~LkpgG~l~~~~g~  186 (249)
T 3g89_A          153 ARAVARAVAPLCVLSELLLPFLEVGGAAVAMKGP  186 (249)
T ss_dssp             EEEEEESSCCHHHHHHHHGGGEEEEEEEEEEECS
T ss_pred             eEEEECCcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            999998654  34557889999999999986553

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.42  E-value=7.7e-13  Score=125.24  Aligned_cols=110  Identities=21%  Similarity=0.234  Sum_probs=88.9

Q ss_pred             HHHHHHHHH---hhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEE
Q psy7829         119 QIADAAENL---KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE  195 (511)
Q Consensus       119 ~~~~~~~~l---~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  195 (511)
                      ....+++.+   ...+.++.+|||+|||+|.++..+++.   ..+|+++|+|+.+++.+++++..      ..+++++++
T Consensus        22 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~------~~~~~~~~~   92 (263)
T 2yqz_A           22 VAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKIAG------VDRKVQVVQ   92 (263)
T ss_dssp             HHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHTTT------SCTTEEEEE
T ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHhhc------cCCceEEEE
Confidence            344455555   224678899999999999999999886   35799999999999999998722      356899999


Q ss_pred             ccCCCCCCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEE
Q psy7829         196 ADAREGYLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       196 ~d~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~  237 (511)
                      +|+.....+.++||+|++..+++++      .+++.+.|||||.+++.
T Consensus        93 ~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A           93 ADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             SCTTSCCSCTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccCCCCCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence            9997654456789999999887665      37889999999999985

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.42  E-value=4.6e-13  Score=122.90  Aligned_cols=98  Identities=13%  Similarity=0.173  Sum_probs=83.3

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ..++.+|||+|||+|.++..+++..   .+|+++|+++.+++.|++++...       ++++++++|+.+.. ..++||+
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~d~~~~~-~~~~fD~  117 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRW-------SHISWAATDILQFS-TAELFDL  117 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTC-------SSEEEEECCTTTCC-CSCCEEE
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccC-------CCeEEEEcchhhCC-CCCCccE
Confidence            4567899999999999999999875   37999999999999999997653       38999999998755 4588999


Q ss_pred             EEecCCCCch---------HHHHHhhcccCcEEEEEEc
Q psy7829         211 IYYGGCVSEV---------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       211 I~~~~~~~~~---------~~~~~~~LkpgG~l~~~~~  239 (511)
                      |+++.+++++         .+++.+.|||||.+++...
T Consensus       118 v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  155 (216)
T 3ofk_A          118 IVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA  155 (216)
T ss_dssp             EEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence            9999877654         3578899999999998654

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.42  E-value=5.9e-13  Score=123.60  Aligned_cols=108  Identities=11%  Similarity=0.121  Sum_probs=83.6

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCC-CcCCCCCeEEEEccCCCCC---CCCC
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK-DLLDSGRVRIVEADAREGY---LPEA  206 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-~~~~~~~v~~~~~d~~~~~---~~~~  206 (511)
                      ..++.+|||||||+|.++..+|+.. +...|+|+|+|+.+++.|++++..... ......|++++++|+...+   .+.+
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~  122 (235)
T 3ckk_A           44 AQAQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKG  122 (235)
T ss_dssp             --CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTT
T ss_pred             cCCCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCc
Confidence            3467789999999999999999986 778999999999999999988753100 0003568999999997622   3457


Q ss_pred             CccEEEecCCCCc--------------hHHHHHhhcccCcEEEEEEc
Q psy7829         207 PYDVIYYGGCVSE--------------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       207 ~fD~I~~~~~~~~--------------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      +||.|++..+.++              +++++.++|||||.|++...
T Consensus       123 ~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td  169 (235)
T 3ckk_A          123 QLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD  169 (235)
T ss_dssp             CEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred             CeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence            8999998765432              56889999999999998654

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.42  E-value=2.3e-13  Score=127.03  Aligned_cols=119  Identities=16%  Similarity=0.237  Sum_probs=94.0

Q ss_pred             cchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEE
Q psy7829         114 MNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI  193 (511)
Q Consensus       114 ~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~  193 (511)
                      +..|.....+...+.  ..++.+|||+|||+|+.+..+++.+++.++|+++|+++.+++.|++++...+    ...++++
T Consensus        43 ~~~~~~~~~l~~l~~--~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g----~~~~v~~  116 (239)
T 2hnk_A           43 QISPEEGQFLNILTK--ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENG----LENKIFL  116 (239)
T ss_dssp             SCCHHHHHHHHHHHH--HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT----CGGGEEE
T ss_pred             ccCHHHHHHHHHHHH--hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCCEEE
Confidence            445666666655554  5578899999999999999999997547899999999999999999998764    2345999


Q ss_pred             EEccCCCCCC---------------C-C-CCccEEEecCCCCch---HHHHHhhcccCcEEEEEE
Q psy7829         194 VEADAREGYL---------------P-E-APYDVIYYGGCVSEV---PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       194 ~~~d~~~~~~---------------~-~-~~fD~I~~~~~~~~~---~~~~~~~LkpgG~l~~~~  238 (511)
                      +.+|+.+..+               + . ++||+|+++......   .+.+.+.|||||++++..
T Consensus       117 ~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          117 KLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             EESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence            9999754211               1 2 689999998776644   488999999999999853

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.42  E-value=2.1e-13  Score=126.14  Aligned_cols=103  Identities=20%  Similarity=0.298  Sum_probs=84.6

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC---C---
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL---P---  204 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~---  204 (511)
                      ..++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.|+++++..+    ..++++++++|+.+..+   .   
T Consensus        62 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~~  137 (225)
T 3tr6_A           62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAG----LSDKIGLRLSPAKDTLAELIHAGQ  137 (225)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEESCHHHHHHHHHTTTC
T ss_pred             hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCC----CCCceEEEeCCHHHHHHHhhhccC
Confidence            4467899999999999999999987557899999999999999999998865    34569999999854221   1   


Q ss_pred             CCCccEEEecCCCCc---hHHHHHhhcccCcEEEEE
Q psy7829         205 EAPYDVIYYGGCVSE---VPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       205 ~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~l~~~  237 (511)
                      .++||+|+++.....   +.+.+.+.|||||.+++.
T Consensus       138 ~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~  173 (225)
T 3tr6_A          138 AWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVD  173 (225)
T ss_dssp             TTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence            168999999877543   347889999999999873

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.42  E-value=1.1e-12  Score=125.04  Aligned_cols=115  Identities=17%  Similarity=0.241  Sum_probs=89.5

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHH------HHHHHHHHHhccCCCcCCCCCeE
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPE------LIEASLRNISKGNKDLLDSGRVR  192 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~------~~~~a~~~~~~~~~~~~~~~~v~  192 (511)
                      ....+++.+.  +.++.+|||||||+|.++..+++..++..+|+++|+|+.      +++.|++++...+    ..++++
T Consensus        31 ~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~----~~~~v~  104 (275)
T 3bkx_A           31 HRLAIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP----LGDRLT  104 (275)
T ss_dssp             HHHHHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTST----TGGGEE
T ss_pred             HHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcC----CCCceE
Confidence            3444555554  678999999999999999999999767789999999997      9999999988754    235899


Q ss_pred             EEEcc-CC--CCCCCCCCccEEEecCCCCchH------HHHHhhcccCcEEEEEEc
Q psy7829         193 IVEAD-AR--EGYLPEAPYDVIYYGGCVSEVP------SRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       193 ~~~~d-~~--~~~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~l~~~~~  239 (511)
                      ++++| ..  ....+.++||+|++..+++++.      +.+..+++|||++++...
T Consensus       105 ~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~  160 (275)
T 3bkx_A          105 VHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEW  160 (275)
T ss_dssp             EECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred             EEECChhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence            99998 32  2222357899999998886653      455666677999998643

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.42  E-value=8.5e-13  Score=125.96  Aligned_cols=102  Identities=25%  Similarity=0.174  Sum_probs=87.3

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ++++.+|||+|||+|.++..+++.. .. +|+++|+|+.+++.|++|++.++    ..++++++++|+.+... .++||+
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~~-~~-~V~~vD~s~~~~~~a~~n~~~n~----~~~~v~~~~~D~~~~~~-~~~fD~  195 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVYG-KA-KVIAIEKDPYTFKFLVENIHLNK----VEDRMSAYNMDNRDFPG-ENIADR  195 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHT-CC-EEEEECCCHHHHHHHHHHHHHTT----CTTTEEEECSCTTTCCC-CSCEEE
T ss_pred             CCCCCEEEEecccCCHHHHHHHHhC-CC-EEEEEECCHHHHHHHHHHHHHcC----CCceEEEEECCHHHhcc-cCCccE
Confidence            5679999999999999999999985 33 79999999999999999999875    23459999999987554 578999


Q ss_pred             EEecCCCC--chHHHHHhhcccCcEEEEEEc
Q psy7829         211 IYYGGCVS--EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       211 I~~~~~~~--~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      |+++.+..  .+...+.+.|||||.+++...
T Consensus       196 Vi~~~p~~~~~~l~~~~~~LkpgG~l~~~~~  226 (278)
T 2frn_A          196 ILMGYVVRTHEFIPKALSIAKDGAIIHYHNT  226 (278)
T ss_dssp             EEECCCSSGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             EEECCchhHHHHHHHHHHHCCCCeEEEEEEe
Confidence            99987764  466889999999999998544

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.42  E-value=7.3e-13  Score=129.55  Aligned_cols=115  Identities=20%  Similarity=0.190  Sum_probs=89.6

Q ss_pred             hHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHh-------ccCCCcCCCC
Q psy7829         117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNIS-------KGNKDLLDSG  189 (511)
Q Consensus       117 p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-------~~~~~~~~~~  189 (511)
                      +.....+++.+.  +.++.+|||||||+|.+++.++... +..+|+|||+++.+++.|+++.+       .+|   +...
T Consensus       159 ~~~i~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~-g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~G---l~~~  232 (438)
T 3uwp_A          159 FDLVAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYG---KKHA  232 (438)
T ss_dssp             HHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHC-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHT---BCCC
T ss_pred             HHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhC---CCCC
Confidence            456677777776  8899999999999999999999876 34579999999999999988653       222   1236


Q ss_pred             CeEEEEccCCCCCCCC--CCccEEEecCCCCc-----hHHHHHhhcccCcEEEEE
Q psy7829         190 RVRIVEADAREGYLPE--APYDVIYYGGCVSE-----VPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       190 ~v~~~~~d~~~~~~~~--~~fD~I~~~~~~~~-----~~~~~~~~LkpgG~l~~~  237 (511)
                      +|+|+++|+.+.....  ..||+|+++..+..     .+.++++.|||||+|++.
T Consensus       233 rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVss  287 (438)
T 3uwp_A          233 EYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSS  287 (438)
T ss_dssp             EEEEEECCTTSHHHHHHHHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEES
T ss_pred             CeEEEECcccCCccccccCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEe
Confidence            8999999998643221  46999999877532     236788999999999874

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.42  E-value=3.3e-14  Score=143.60  Aligned_cols=169  Identities=13%  Similarity=0.072  Sum_probs=112.3

Q ss_pred             CCCCCcccCCCccHHHHHHHHHHcCCCCCH-HH-HHHHHhCCCCCccCCCCCCCcccccCCCcccchhHHHHHHHHHHhh
Q psy7829          52 PDNLNHFKNEGTCQTDLVNHLRDIGKIRTE-RV-AQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKL  129 (511)
Q Consensus        52 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~-~~a~~~~~r~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~  129 (511)
                      +...+++|+...+..++.+.+   ++...+ .+ ..++....+..+.....|.++.+.++...+       ..+...+. 
T Consensus        30 ~~~~lRvN~lk~~~~~~~~~l---~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~G~~~vQd~ss-------~l~a~~L~-   98 (464)
T 3m6w_A           30 RTYGLRVNTLKLPPEAFQRIS---PWPLRPIPWCQEGFYYPEEARPGPHPFFYAGLYYIQEPSA-------QAVGVLLD-   98 (464)
T ss_dssp             CCCEEEECTTTCCHHHHHHHC---SSCCEEETTEEEEEECCTTCCCSSSHHHHTTSEEECCTTT-------HHHHHHHC-
T ss_pred             CCeEEEEcCCCCCHHHHHHHc---CCCceecCCCCceEEECCCCCcccChHHhCCeEEEECHHH-------HHHHHhcC-
Confidence            566788899999988887766   221000 00 000000000011111123333333332221       12233444 


Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCc
Q psy7829         130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPY  208 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~f  208 (511)
                       ..++.+|||+|||+|..+..+++.++..++|+++|+++.+++.+++|++++|     .. +.++++|+..... ..++|
T Consensus        99 -~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G-----~~-v~~~~~Da~~l~~~~~~~F  171 (464)
T 3m6w_A           99 -PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWG-----AP-LAVTQAPPRALAEAFGTYF  171 (464)
T ss_dssp             -CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHC-----CC-CEEECSCHHHHHHHHCSCE
T ss_pred             -cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-----Ce-EEEEECCHHHhhhhccccC
Confidence             6789999999999999999999998666899999999999999999999875     44 8999999765321 24789


Q ss_pred             cEEEecCCCC----------------------------chHHHHHhhcccCcEEEEEE
Q psy7829         209 DVIYYGGCVS----------------------------EVPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       209 D~I~~~~~~~----------------------------~~~~~~~~~LkpgG~l~~~~  238 (511)
                      |+|++++++.                            .+++.+.+.|||||+|++++
T Consensus       172 D~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysT  229 (464)
T 3m6w_A          172 HRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYST  229 (464)
T ss_dssp             EEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            9999988871                            23467888999999999864

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.42  E-value=3.7e-12  Score=119.47  Aligned_cols=118  Identities=21%  Similarity=0.311  Sum_probs=96.7

Q ss_pred             cchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEE
Q psy7829         114 MNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI  193 (511)
Q Consensus       114 ~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~  193 (511)
                      +..|.....++..+.  +.++.+|||+|||+|.++..+++.   ..+|+++|+++.+++.|+++....+    ..+++++
T Consensus        74 ~~~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~  144 (248)
T 2yvl_A           74 IIYPKDSFYIALKLN--LNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFN----LGKNVKF  144 (248)
T ss_dssp             CCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTT----CCTTEEE
T ss_pred             cccchhHHHHHHhcC--CCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcC----CCCcEEE
Confidence            334555666666665  778999999999999999999998   4589999999999999999988754    2368999


Q ss_pred             EEccCCCCCCCCCCccEEEecCCCC-chHHHHHhhcccCcEEEEEEcc
Q psy7829         194 VEADAREGYLPEAPYDVIYYGGCVS-EVPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       194 ~~~d~~~~~~~~~~fD~I~~~~~~~-~~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      +.+|+.+.....+.||+|+++.+-. .+.+++.+.|+|||.+++....
T Consensus       145 ~~~d~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  192 (248)
T 2yvl_A          145 FNVDFKDAEVPEGIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLLPT  192 (248)
T ss_dssp             ECSCTTTSCCCTTCBSEEEECSSCGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred             EEcChhhcccCCCcccEEEECCcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            9999987552446899999987654 6778999999999999997763

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.42  E-value=2e-13  Score=139.29  Aligned_cols=176  Identities=16%  Similarity=0.136  Sum_probs=117.5

Q ss_pred             CCCCCCCcccCCCccHHHHHHHHHHcCCCCCH-HH-HHHHHhCCCCCccCCCCCCCcccccCCCcccchhHHHHHHHHHH
Q psy7829          50 PPPDNLNHFKNEGTCQTDLVNHLRDIGKIRTE-RV-AQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENL  127 (511)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~-~~a~~~~~r~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l  127 (511)
                      .+++..+++|+...+..++.+.|...|+...+ .+ ..++...++..+.....|.++.+.+       +......+...+
T Consensus       183 ~~~~~~~Rvn~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~-------qd~~s~l~~~~l  255 (450)
T 2yxl_A          183 RHEWISIRVNTLKANVEEVIGELEEDGVEVVRSERVPTILKIKGPYNFDTSSAFNEGKIIV-------QEEASAVASIVL  255 (450)
T ss_dssp             CCCEEEEEECTTTCCHHHHHHHHHHTTCCEEECSSCTTEEEEESCCCTTSCHHHHTTSEEE-------CCHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHhCCccceecCccCceEEeCCCCCcccCchhhCceEEe-------cCchhHHHHHhc
Confidence            45566788898888899999999887752111 00 0000000000000111122222211       111222233444


Q ss_pred             hhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC--CCC
Q psy7829         128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY--LPE  205 (511)
Q Consensus       128 ~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~  205 (511)
                      .  ..++.+|||+|||+|..+..+++.++..++|+++|+++.+++.+++++++.|     .++++++++|+....  ...
T Consensus       256 ~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g-----~~~v~~~~~D~~~~~~~~~~  328 (450)
T 2yxl_A          256 D--PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMG-----IKIVKPLVKDARKAPEIIGE  328 (450)
T ss_dssp             C--CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTT-----CCSEEEECSCTTCCSSSSCS
T ss_pred             C--CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-----CCcEEEEEcChhhcchhhcc
Confidence            4  7789999999999999999999987444899999999999999999999864     568999999987643  223


Q ss_pred             CCccEEEecCCCC----------------------------chHHHHHhhcccCcEEEEEEc
Q psy7829         206 APYDVIYYGGCVS----------------------------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       206 ~~fD~I~~~~~~~----------------------------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      ++||+|+++.++.                            .++..+.+.|||||++++...
T Consensus       329 ~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tc  390 (450)
T 2yxl_A          329 EVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTC  390 (450)
T ss_dssp             SCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred             CCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            6799999987762                            235678899999999998643

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.42  E-value=1.2e-12  Score=120.34  Aligned_cols=104  Identities=22%  Similarity=0.235  Sum_probs=86.1

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829         121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE  200 (511)
Q Consensus       121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  200 (511)
                      ..+++.+.  ..++.+|||+|||+|.++..+++.   ..+++++|+++.+++.+++++.         .+++++++|+.+
T Consensus        35 ~~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~d~~~  100 (220)
T 3hnr_A           35 EDILEDVV--NKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP---------KEFSITEGDFLS  100 (220)
T ss_dssp             HHHHHHHH--HTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC---------TTCCEESCCSSS
T ss_pred             HHHHHHhh--ccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC---------CceEEEeCChhh
Confidence            34555554  457889999999999999999987   3479999999999999998854         368999999987


Q ss_pred             CCCCCCCccEEEecCCCCc--------hHHHHHhhcccCcEEEEEEc
Q psy7829         201 GYLPEAPYDVIYYGGCVSE--------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       201 ~~~~~~~fD~I~~~~~~~~--------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      .... ++||+|++..++++        +++++.+.|||||.+++...
T Consensus       101 ~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  146 (220)
T 3hnr_A          101 FEVP-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADT  146 (220)
T ss_dssp             CCCC-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             cCCC-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            5545 89999999988865        44788999999999998643

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.41  E-value=7.9e-13  Score=120.29  Aligned_cols=110  Identities=15%  Similarity=0.188  Sum_probs=89.8

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      ....+++.+...+.++.+|||+|||+|.++..+++.  +..+|+++|+++.+++.|++++..++     ..+++++++|+
T Consensus        46 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~  118 (205)
T 3grz_A           46 TTQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKL--GAKSVLATDISDESMTAAEENAALNG-----IYDIALQKTSL  118 (205)
T ss_dssp             HHHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTT-----CCCCEEEESST
T ss_pred             cHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcC-----CCceEEEeccc
Confidence            344455666555678899999999999999998875  45689999999999999999998764     44599999998


Q ss_pred             CCCCCCCCCccEEEecCCCCch---HHHHHhhcccCcEEEEE
Q psy7829         199 REGYLPEAPYDVIYYGGCVSEV---PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       199 ~~~~~~~~~fD~I~~~~~~~~~---~~~~~~~LkpgG~l~~~  237 (511)
                      ....  .++||+|+++.+++++   .+++.+.|||||.+++.
T Consensus       119 ~~~~--~~~fD~i~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  158 (205)
T 3grz_A          119 LADV--DGKFDLIVANILAEILLDLIPQLDSHLNEDGQVIFS  158 (205)
T ss_dssp             TTTC--CSCEEEEEEESCHHHHHHHGGGSGGGEEEEEEEEEE
T ss_pred             cccC--CCCceEEEECCcHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            7643  3789999999877654   46778999999999985

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.41  E-value=2.1e-12  Score=115.97  Aligned_cols=112  Identities=21%  Similarity=0.228  Sum_probs=91.8

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCC--eEEEEc
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGR--VRIVEA  196 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~--v~~~~~  196 (511)
                      ....+++.+.  ..++.+|||+|||+|.++..+++.   ..+++++|+++.+++.+++++...+     ..+  ++++.+
T Consensus        40 ~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~  109 (194)
T 1dus_A           40 GTKILVENVV--VDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNN-----LDNYDIRVVHS  109 (194)
T ss_dssp             HHHHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTT-----CTTSCEEEEEC
T ss_pred             HHHHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcC-----CCccceEEEEC
Confidence            4555666664  568889999999999999999887   4589999999999999999998753     344  999999


Q ss_pred             cCCCCCCCCCCccEEEecCCCCc-------hHHHHHhhcccCcEEEEEEccC
Q psy7829         197 DAREGYLPEAPYDVIYYGGCVSE-------VPSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       197 d~~~~~~~~~~fD~I~~~~~~~~-------~~~~~~~~LkpgG~l~~~~~~~  241 (511)
                      |+.+... .++||+|+++.++++       +.+++.+.|+|||.+++.....
T Consensus       110 d~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  160 (194)
T 1dus_A          110 DLYENVK-DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             STTTTCT-TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             chhcccc-cCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence            9987443 478999999988764       3477889999999999976643

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.41  E-value=9.2e-13  Score=120.03  Aligned_cols=116  Identities=15%  Similarity=0.236  Sum_probs=90.7

Q ss_pred             HHHHHHHHHhhc-CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc
Q psy7829         119 QIADAAENLKLH-LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD  197 (511)
Q Consensus       119 ~~~~~~~~l~~~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  197 (511)
                      +...+++.+... ..++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++...+     .++++++++|
T Consensus        50 ~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d  123 (207)
T 1jsx_A           50 LVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELK-----LENIEPVQSR  123 (207)
T ss_dssp             HHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTT-----CSSEEEEECC
T ss_pred             HHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCeEEEecc
Confidence            344555555411 1247899999999999999999986 67899999999999999999998753     4569999999


Q ss_pred             CCCCCCCCCCccEEEecCCC--CchHHHHHhhcccCcEEEEEEccC
Q psy7829         198 AREGYLPEAPYDVIYYGGCV--SEVPSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       198 ~~~~~~~~~~fD~I~~~~~~--~~~~~~~~~~LkpgG~l~~~~~~~  241 (511)
                      +.+.. +.++||+|+++...  ..+.+.+.+.|+|||.+++..+..
T Consensus       124 ~~~~~-~~~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  168 (207)
T 1jsx_A          124 VEEFP-SEPPFDGVISRAFASLNDMVSWCHHLPGEQGRFYALKGQM  168 (207)
T ss_dssp             TTTSC-CCSCEEEEECSCSSSHHHHHHHHTTSEEEEEEEEEEESSC
T ss_pred             hhhCC-ccCCcCEEEEeccCCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            98754 34789999986532  234578889999999999976643

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.41  E-value=7.1e-13  Score=124.29  Aligned_cols=107  Identities=17%  Similarity=0.205  Sum_probs=87.4

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      ....+++.+.. ..++.+|||+|||+|.++..+++.. +  +|+|+|+|+.+++.|++++..         +++++++|+
T Consensus        29 ~~~~~~~~l~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~--~v~gvD~s~~~~~~a~~~~~~---------~v~~~~~d~   95 (250)
T 2p7i_A           29 MHPFMVRAFTP-FFRPGNLLELGSFKGDFTSRLQEHF-N--DITCVEASEEAISHAQGRLKD---------GITYIHSRF   95 (250)
T ss_dssp             HHHHHHHHHGG-GCCSSCEEEESCTTSHHHHHHTTTC-S--CEEEEESCHHHHHHHHHHSCS---------CEEEEESCG
T ss_pred             HHHHHHHHHHh-hcCCCcEEEECCCCCHHHHHHHHhC-C--cEEEEeCCHHHHHHHHHhhhC---------CeEEEEccH
Confidence            44556666652 3467899999999999999999874 3  699999999999999988532         699999998


Q ss_pred             CCCCCCCCCccEEEecCCCCch------HHHHH-hhcccCcEEEEEEc
Q psy7829         199 REGYLPEAPYDVIYYGGCVSEV------PSRVL-NQLKKGGRILAPIG  239 (511)
Q Consensus       199 ~~~~~~~~~fD~I~~~~~~~~~------~~~~~-~~LkpgG~l~~~~~  239 (511)
                      .+.. .+++||+|++..+++++      ++++. +.|||||++++.+.
T Consensus        96 ~~~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~  142 (250)
T 2p7i_A           96 EDAQ-LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCP  142 (250)
T ss_dssp             GGCC-CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             HHcC-cCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            8753 45889999999888765      37889 99999999999764

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.41  E-value=3.2e-13  Score=117.82  Aligned_cols=99  Identities=12%  Similarity=0.067  Sum_probs=81.2

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCcc
Q psy7829         130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYD  209 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  209 (511)
                      ++.+..+|||+|||+|.++..++... |..+|+++|+|+.|++.+++++..+|.    ..++++  .|..... +.++||
T Consensus        46 ~l~~~~~VLDlGCG~GplAl~l~~~~-p~a~~~A~Di~~~~leiar~~~~~~g~----~~~v~~--~d~~~~~-~~~~~D  117 (200)
T 3fzg_A           46 NIKHVSSILDFGCGFNPLALYQWNEN-EKIIYHAYDIDRAEIAFLSSIIGKLKT----TIKYRF--LNKESDV-YKGTYD  117 (200)
T ss_dssp             HSCCCSEEEEETCTTHHHHHHHHCSS-CCCEEEEECSCHHHHHHHHHHHHHSCC----SSEEEE--ECCHHHH-TTSEEE
T ss_pred             hcCCCCeEEEecCCCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCC----CccEEE--ecccccC-CCCCcC
Confidence            45678899999999999999998875 778999999999999999999998652    225666  6665433 347899


Q ss_pred             EEEecCCCCchH------HHHHhhcccCcEEEE
Q psy7829         210 VIYYGGCVSEVP------SRVLNQLKKGGRILA  236 (511)
Q Consensus       210 ~I~~~~~~~~~~------~~~~~~LkpgG~l~~  236 (511)
                      +|++...+|.+.      .++.+.|||||.++-
T Consensus       118 vVLa~k~LHlL~~~~~al~~v~~~L~pggvfIS  150 (200)
T 3fzg_A          118 VVFLLKMLPVLKQQDVNILDFLQLFHTQNFVIS  150 (200)
T ss_dssp             EEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEE
T ss_pred             hhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEE
Confidence            999999887763      478999999988763

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.41  E-value=6.1e-13  Score=125.78  Aligned_cols=104  Identities=22%  Similarity=0.294  Sum_probs=86.0

Q ss_pred             CC-CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC--CCCC
Q psy7829         131 LV-DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL--PEAP  207 (511)
Q Consensus       131 ~~-~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~  207 (511)
                      .+ ++.+|||+|||+|.++..+++.. + .+|+++|+++.+++.|++++..++    ..++++++++|+.+...  ..++
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~-~-~~v~gvDi~~~~~~~a~~n~~~~~----~~~~v~~~~~D~~~~~~~~~~~~  119 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRT-K-AKIVGVEIQERLADMAKRSVAYNQ----LEDQIEIIEYDLKKITDLIPKER  119 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTC-C-CEEEEECCSHHHHHHHHHHHHHTT----CTTTEEEECSCGGGGGGTSCTTC
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhc-C-CcEEEEECCHHHHHHHHHHHHHCC----CcccEEEEECcHHHhhhhhccCC
Confidence            56 78999999999999999999985 3 389999999999999999999875    34579999999876432  2578


Q ss_pred             ccEEEecCCCCc--------------------------hHHHHHhhcccCcEEEEEEcc
Q psy7829         208 YDVIYYGGCVSE--------------------------VPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       208 fD~I~~~~~~~~--------------------------~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      ||+|++++++..                          +.+.+.++|||||++++....
T Consensus       120 fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  178 (259)
T 3lpm_A          120 ADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP  178 (259)
T ss_dssp             EEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred             ccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH
Confidence            999999877632                          347889999999999996544

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.41  E-value=6.3e-13  Score=125.58  Aligned_cols=105  Identities=20%  Similarity=0.306  Sum_probs=87.2

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829         121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE  200 (511)
Q Consensus       121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  200 (511)
                      ..+++.+.  ..++.+|||+|||+|.++..+++.+ +..+++++|+|+.+++.++++.          ++++++++|+..
T Consensus        23 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~----------~~~~~~~~d~~~   89 (259)
T 2p35_A           23 RDLLAQVP--LERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADRL----------PNTNFGKADLAT   89 (259)
T ss_dssp             HHHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHHS----------TTSEEEECCTTT
T ss_pred             HHHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC----------CCcEEEECChhh
Confidence            33444443  5678899999999999999999987 6678999999999999999872          268999999987


Q ss_pred             CCCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEEc
Q psy7829         201 GYLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       201 ~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~  239 (511)
                      .. ..++||+|+++.+++++      ++++.+.|||||.+++.+.
T Consensus        90 ~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  133 (259)
T 2p35_A           90 WK-PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMP  133 (259)
T ss_dssp             CC-CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             cC-ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeC
Confidence            55 56789999999888765      3678899999999999764

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.41  E-value=7.6e-13  Score=132.41  Aligned_cols=106  Identities=24%  Similarity=0.402  Sum_probs=88.6

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhcc-----CCCcCCCCCeEEEEccCCCC----
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKG-----NKDLLDSGRVRIVEADAREG----  201 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-----~~~~~~~~~v~~~~~d~~~~----  201 (511)
                      ..++.+|||+|||+|..+..+++.+++.++|+++|+|+.+++.|+++++..     |.  +..++++|+++|+.+.    
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~--~~~~~v~~~~~d~~~l~~~~  158 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGS--PSRSNVRFLKGFIENLATAE  158 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSS--TTCCCEEEEESCTTCGGGCB
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccc--cCCCceEEEEccHHHhhhcc
Confidence            457889999999999999999999877889999999999999999987653     10  1236899999999864    


Q ss_pred             --CCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEE
Q psy7829         202 --YLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       202 --~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~  238 (511)
                        ..+.++||+|+++.+++++      ++++.++|||||+|++..
T Consensus       159 ~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~  203 (383)
T 4fsd_A          159 PEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSD  203 (383)
T ss_dssp             SCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence              4445789999999888664      488999999999999863

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.41  E-value=1.6e-12  Score=117.41  Aligned_cols=105  Identities=23%  Similarity=0.175  Sum_probs=85.9

Q ss_pred             HHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC
Q psy7829         123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY  202 (511)
Q Consensus       123 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  202 (511)
                      +++.+.  ..++.+|||+|||+|..+..+++.   ..+++++|+++.+++.+++++...+     .++++++.+|+.+..
T Consensus        24 l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~~~   93 (199)
T 2xvm_A           24 VLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIEN-----LDNLHTRVVDLNNLT   93 (199)
T ss_dssp             HHHHTT--TSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHT-----CTTEEEEECCGGGCC
T ss_pred             HHHHhh--ccCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCC-----CCCcEEEEcchhhCC
Confidence            444454  456789999999999999999987   3479999999999999999987753     457999999988654


Q ss_pred             CCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEEE
Q psy7829         203 LPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       203 ~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~~  238 (511)
                      . .++||+|++..+++++        .+++.+.|||||.+++..
T Consensus        94 ~-~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A           94 F-DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             C-CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             C-CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            4 5789999999877654        377899999999987744

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.41  E-value=4.8e-13  Score=118.72  Aligned_cols=119  Identities=14%  Similarity=0.121  Sum_probs=90.3

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      +...+++.+. ...++.+|||+|||+|.++..+++.  +..+|+++|+++.+++.|++++...+    ..++++++.+|+
T Consensus        18 ~~~~~~~~l~-~~~~~~~vLDlGcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~~~d~   90 (177)
T 2esr_A           18 VRGAIFNMIG-PYFNGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTK----AENRFTLLKMEA   90 (177)
T ss_dssp             CHHHHHHHHC-SCCCSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTT----CGGGEEEECSCH
T ss_pred             HHHHHHHHHH-hhcCCCeEEEeCCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcC----CCCceEEEECcH
Confidence            3344555553 1457889999999999999999886  34689999999999999999998864    234799999998


Q ss_pred             CCCC-CCCCCccEEEecCCCC-----chHHHHH--hhcccCcEEEEEEccCCCc
Q psy7829         199 REGY-LPEAPYDVIYYGGCVS-----EVPSRVL--NQLKKGGRILAPIGPMDDF  244 (511)
Q Consensus       199 ~~~~-~~~~~fD~I~~~~~~~-----~~~~~~~--~~LkpgG~l~~~~~~~~~~  244 (511)
                      .+.. ...+.||+|+++.++.     .+.+.+.  +.|||||.+++........
T Consensus        91 ~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~~  144 (177)
T 2esr_A           91 ERAIDCLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKTVLL  144 (177)
T ss_dssp             HHHHHHBCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETTCCC
T ss_pred             HHhHHhhcCCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECCcccc
Confidence            6521 1235799999998763     2235555  8899999999987765543

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.40  E-value=9.5e-13  Score=120.04  Aligned_cols=113  Identities=16%  Similarity=0.118  Sum_probs=87.3

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCC
Q psy7829         120 IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAR  199 (511)
Q Consensus       120 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  199 (511)
                      ...+++.+. ...++.+|||+|||+|..+..++...  ..+|+++|+|+.+++.+++++...+      .+++++++|+.
T Consensus        11 ~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~   81 (209)
T 2p8j_A           11 LYRFLKYCN-ESNLDKTVLDCGAGGDLPPLSIFVED--GYKTYGIEISDLQLKKAENFSRENN------FKLNISKGDIR   81 (209)
T ss_dssp             HHHHHHHHH-HSSSCSEEEEESCCSSSCTHHHHHHT--TCEEEEEECCHHHHHHHHHHHHHHT------CCCCEEECCTT
T ss_pred             HHHHHHHHh-ccCCCCEEEEECCCCCHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHhcC------CceEEEECchh
Confidence            334444444 35678999999999999855444443  4589999999999999999987642      46899999998


Q ss_pred             CCCCCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEEEccC
Q psy7829         200 EGYLPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       200 ~~~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~~~~~  241 (511)
                      +...+.++||+|++..+++++        .+++.+.|||||.+++.....
T Consensus        82 ~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  131 (209)
T 2p8j_A           82 KLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTT  131 (209)
T ss_dssp             SCCSCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred             hCCCCCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            755455789999998877665        267899999999999976543

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.40  E-value=7e-13  Score=120.32  Aligned_cols=116  Identities=15%  Similarity=0.085  Sum_probs=87.6

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      +...+++.+... .++.+|||+|||+|.++..++...  ..+|+++|+|+.+++.|+++++.++     .++++++++|+
T Consensus        41 ~~~~l~~~l~~~-~~~~~vLDlgcG~G~~~~~l~~~~--~~~V~~vD~s~~~l~~a~~~~~~~~-----~~~v~~~~~D~  112 (202)
T 2fpo_A           41 VRETLFNWLAPV-IVDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLK-----AGNARVVNSNA  112 (202)
T ss_dssp             HHHHHHHHHHHH-HTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTT-----CCSEEEECSCH
T ss_pred             HHHHHHHHHHhh-cCCCeEEEeCCCcCHHHHHHHhcC--CCEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEECCH
Confidence            444455555411 267899999999999999877764  2489999999999999999998864     36899999998


Q ss_pred             CCC-CCCCCCccEEEecCCCC-----chHHHHHh--hcccCcEEEEEEccCC
Q psy7829         199 REG-YLPEAPYDVIYYGGCVS-----EVPSRVLN--QLKKGGRILAPIGPMD  242 (511)
Q Consensus       199 ~~~-~~~~~~fD~I~~~~~~~-----~~~~~~~~--~LkpgG~l~~~~~~~~  242 (511)
                      .+. ....++||+|+++.+++     .+.+.+.+  +|+|||.+++......
T Consensus       113 ~~~~~~~~~~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~  164 (202)
T 2fpo_A          113 MSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEVEN  164 (202)
T ss_dssp             HHHHSSCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEGGG
T ss_pred             HHHHhhcCCCCCEEEECCCCCCCcHHHHHHHHHhcCccCCCcEEEEEECCCc
Confidence            652 22346899999998854     23355544  4999999999876543

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.40  E-value=7.1e-13  Score=116.70  Aligned_cols=119  Identities=16%  Similarity=0.091  Sum_probs=91.6

Q ss_pred             hHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829         117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA  196 (511)
Q Consensus       117 p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  196 (511)
                      ..+...+++.+...++++.+|||+|||+|.++..+++.. +  +|+++|+++.+++.|++++..++     . +++++++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~-~--~v~~vD~~~~~~~~a~~~~~~~~-----~-~~~~~~~   95 (171)
T 1ws6_A           25 VRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEG-W--EAVLVEKDPEAVRLLKENVRRTG-----L-GARVVAL   95 (171)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTT-C--EEEEECCCHHHHHHHHHHHHHHT-----C-CCEEECS
T ss_pred             HHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCC-C--eEEEEeCCHHHHHHHHHHHHHcC-----C-ceEEEec
Confidence            345555666665334478899999999999999999874 4  39999999999999999998764     2 7999999


Q ss_pred             cCCCCCC----CCCCccEEEecCCCC----chHHHHH--hhcccCcEEEEEEccCCCc
Q psy7829         197 DAREGYL----PEAPYDVIYYGGCVS----EVPSRVL--NQLKKGGRILAPIGPMDDF  244 (511)
Q Consensus       197 d~~~~~~----~~~~fD~I~~~~~~~----~~~~~~~--~~LkpgG~l~~~~~~~~~~  244 (511)
                      |+.+...    ..++||+|+++.+++    .+.+.+.  +.|||||.+++.+......
T Consensus        96 d~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~~  153 (171)
T 1ws6_A           96 PVEVFLPEAKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKDLYL  153 (171)
T ss_dssp             CHHHHHHHHHHTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETTSCC
T ss_pred             cHHHHHHhhhccCCceEEEEECCCCchhHHHHHHHHHhhcccCCCcEEEEEeCCccCC
Confidence            9865211    124799999997652    3446666  8999999999988765544

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.40  E-value=6.8e-13  Score=121.25  Aligned_cols=101  Identities=19%  Similarity=0.194  Sum_probs=82.9

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC-CCCCCccE
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY-LPEAPYDV  210 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~  210 (511)
                      .++.+|||+|||+|+.+..+++.+++.++|+++|+++.+++.|+++++..+    ..++++++++|+.+.. ...+ ||+
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~-fD~  129 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNG----LIDRVELQVGDPLGIAAGQRD-IDI  129 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHS----GGGGEEEEESCHHHHHTTCCS-EEE
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC----CCceEEEEEecHHHHhccCCC-CCE
Confidence            467899999999999999999987447899999999999999999998764    2357999999986421 2235 999


Q ss_pred             EEecCCCCc---hHHHHHhhcccCcEEEEE
Q psy7829         211 IYYGGCVSE---VPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       211 I~~~~~~~~---~~~~~~~~LkpgG~l~~~  237 (511)
                      |+++.....   +.+++.+.|||||.+++.
T Consensus       130 v~~~~~~~~~~~~l~~~~~~LkpgG~lv~~  159 (210)
T 3c3p_A          130 LFMDCDVFNGADVLERMNRCLAKNALLIAV  159 (210)
T ss_dssp             EEEETTTSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEEcCChhhhHHHHHHHHHhcCCCeEEEEE
Confidence            999876543   457889999999999874

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.40  E-value=2.2e-12  Score=125.80  Aligned_cols=100  Identities=17%  Similarity=0.163  Sum_probs=84.9

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      +.++.+|||+|||+|.++..+++..  ..+|+++|+|+.+++.|++++...+    ..++++++.+|+.+..   ++||+
T Consensus        88 ~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~---~~fD~  158 (318)
T 2fk8_A           88 LKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASID----TNRSRQVLLQGWEDFA---EPVDR  158 (318)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSC----CSSCEEEEESCGGGCC---CCCSE
T ss_pred             CCCcCEEEEEcccchHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEECChHHCC---CCcCE
Confidence            5688999999999999999999986  3489999999999999999988764    3457999999987642   78999


Q ss_pred             EEecCCCCch--------HHHHHhhcccCcEEEEEEc
Q psy7829         211 IYYGGCVSEV--------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       211 I~~~~~~~~~--------~~~~~~~LkpgG~l~~~~~  239 (511)
                      |++..+++++        .+++.++|||||.+++...
T Consensus       159 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  195 (318)
T 2fk8_A          159 IVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS  195 (318)
T ss_dssp             EEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             EEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            9999877665        3678999999999998544

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.40  E-value=5.6e-13  Score=119.28  Aligned_cols=120  Identities=16%  Similarity=0.143  Sum_probs=91.3

Q ss_pred             hHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829         117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA  196 (511)
Q Consensus       117 p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  196 (511)
                      ..+...+++.+. ...++.+|||+|||+|.++..+++.  +..+|+++|+++.+++.|++++..++    ..++++++++
T Consensus        29 ~~~~~~~~~~l~-~~~~~~~vLD~GcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~~~  101 (187)
T 2fhp_A           29 DKVKESIFNMIG-PYFDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITK----EPEKFEVRKM  101 (187)
T ss_dssp             HHHHHHHHHHHC-SCCSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHT----CGGGEEEEES
T ss_pred             HHHHHHHHHHHH-hhcCCCCEEEeCCccCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhC----CCcceEEEEC
Confidence            345556666663 1357889999999999999988874  34689999999999999999998764    2357999999


Q ss_pred             cCCCCCC----CCCCccEEEecCCCC-----chHHHH--HhhcccCcEEEEEEccCCC
Q psy7829         197 DAREGYL----PEAPYDVIYYGGCVS-----EVPSRV--LNQLKKGGRILAPIGPMDD  243 (511)
Q Consensus       197 d~~~~~~----~~~~fD~I~~~~~~~-----~~~~~~--~~~LkpgG~l~~~~~~~~~  243 (511)
                      |+.+...    ..++||+|+++.++.     .....+  .++|||||.+++.......
T Consensus       102 d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~  159 (187)
T 2fhp_A          102 DANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKTVK  159 (187)
T ss_dssp             CHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred             cHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCCccc
Confidence            9865221    147899999998753     123445  6779999999998776554

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.40  E-value=5.7e-13  Score=124.12  Aligned_cols=103  Identities=23%  Similarity=0.336  Sum_probs=85.1

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-------
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-------  203 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-------  203 (511)
                      ..++.+|||||||+|+.+..+++.+++.++|+++|+++.+++.|+++++..+    ..++++++.+|+.+..+       
T Consensus        68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g----~~~~i~~~~gda~~~l~~l~~~~~  143 (237)
T 3c3y_A           68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAG----VEHKINFIESDAMLALDNLLQGQE  143 (237)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT----CGGGEEEEESCHHHHHHHHHHSTT
T ss_pred             hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEcCHHHHHHHHHhccC
Confidence            4567899999999999999999998557899999999999999999998865    34579999999864211       


Q ss_pred             CCCCccEEEecCCCCc---hHHHHHhhcccCcEEEEE
Q psy7829         204 PEAPYDVIYYGGCVSE---VPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       204 ~~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~l~~~  237 (511)
                      ..++||+|+++.....   +.+.+.+.|||||.+++.
T Consensus       144 ~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d  180 (237)
T 3c3y_A          144 SEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYD  180 (237)
T ss_dssp             CTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEe
Confidence            1368999999876543   447889999999999873

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.40  E-value=1.3e-12  Score=119.69  Aligned_cols=109  Identities=22%  Similarity=0.243  Sum_probs=87.1

Q ss_pred             HHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC
Q psy7829         123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY  202 (511)
Q Consensus       123 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  202 (511)
                      +.+.+...+.++.+|||+|||+|.++..+++.. +. +++++|+++.+++.++++...       .++++++++|+.+..
T Consensus        32 ~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~-~~-~v~~~D~s~~~~~~a~~~~~~-------~~~i~~~~~d~~~~~  102 (215)
T 2pxx_A           32 FRALLEPELRPEDRILVLGCGNSALSYELFLGG-FP-NVTSVDYSSVVVAAMQACYAH-------VPQLRWETMDVRKLD  102 (215)
T ss_dssp             HHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTT-CC-CEEEEESCHHHHHHHHHHTTT-------CTTCEEEECCTTSCC
T ss_pred             HHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcC-CC-cEEEEeCCHHHHHHHHHhccc-------CCCcEEEEcchhcCC
Confidence            344555456788999999999999999999874 32 799999999999999998754       247999999998754


Q ss_pred             CCCCCccEEEecCCCC---------------------chHHHHHhhcccCcEEEEEEcc
Q psy7829         203 LPEAPYDVIYYGGCVS---------------------EVPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       203 ~~~~~fD~I~~~~~~~---------------------~~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      ...++||+|+++.+++                     .+++++.+.|||||.+++....
T Consensus       103 ~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  161 (215)
T 2pxx_A          103 FPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA  161 (215)
T ss_dssp             SCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             CCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence            4457899999876552                     2347889999999999986653

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.40  E-value=5.1e-13  Score=124.48  Aligned_cols=99  Identities=16%  Similarity=0.171  Sum_probs=79.2

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC--CCCCCCc
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG--YLPEAPY  208 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~f  208 (511)
                      ..++.+|||+|||+|.++..+++..  ..+|+++|+|+.+++.|+++....      ..+++++++|+.+.  ...+++|
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~------~~~v~~~~~d~~~~~~~~~~~~f  129 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQ------THKVIPLKGLWEDVAPTLPDGHF  129 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGC------SSEEEEEESCHHHHGGGSCTTCE
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhcC--CCeEEEEcCCHHHHHHHHHHHHhc------CCCeEEEecCHHHhhcccCCCce
Confidence            4678899999999999999997653  348999999999999999998763      25799999998754  3345789


Q ss_pred             cEEEe-cCCC-----C-----chHHHHHhhcccCcEEEEE
Q psy7829         209 DVIYY-GGCV-----S-----EVPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       209 D~I~~-~~~~-----~-----~~~~~~~~~LkpgG~l~~~  237 (511)
                      |+|++ ....     +     .+.+++.++|||||++++.
T Consensus       130 D~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~  169 (236)
T 1zx0_A          130 DGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             EEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             EEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEE
Confidence            99999 3321     1     2257899999999999874

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.40  E-value=1.6e-12  Score=129.13  Aligned_cols=101  Identities=26%  Similarity=0.361  Sum_probs=85.9

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEE
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVI  211 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I  211 (511)
                      .++.+|||+|||+|.++..+++..   .+|+++|+|+.+++.|++++..++      .+++++++|+.+.....++||+|
T Consensus       232 ~~~~~VLDlGcG~G~~~~~la~~g---~~V~gvDis~~al~~A~~n~~~~~------~~v~~~~~D~~~~~~~~~~fD~I  302 (381)
T 3dmg_A          232 VRGRQVLDLGAGYGALTLPLARMG---AEVVGVEDDLASVLSLQKGLEANA------LKAQALHSDVDEALTEEARFDII  302 (381)
T ss_dssp             TTTCEEEEETCTTSTTHHHHHHTT---CEEEEEESBHHHHHHHHHHHHHTT------CCCEEEECSTTTTSCTTCCEEEE
T ss_pred             CCCCEEEEEeeeCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcC------CCeEEEEcchhhccccCCCeEEE
Confidence            378899999999999999999873   489999999999999999998864      14899999998765545789999


Q ss_pred             EecCCCCc-----------hHHHHHhhcccCcEEEEEEccC
Q psy7829         212 YYGGCVSE-----------VPSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       212 ~~~~~~~~-----------~~~~~~~~LkpgG~l~~~~~~~  241 (511)
                      +++.++++           +.+++.+.|||||.+++.....
T Consensus       303 i~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~  343 (381)
T 3dmg_A          303 VTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPF  343 (381)
T ss_dssp             EECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred             EECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence            99988875           3478899999999999976543

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.40  E-value=1.2e-12  Score=121.16  Aligned_cols=102  Identities=23%  Similarity=0.308  Sum_probs=84.8

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC---CCCCC
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY---LPEAP  207 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~  207 (511)
                      +.++.+|||+|||+|.++..+++.+++.++|+++|+++.+++.++++++..       ++++++++|+....   ...++
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-------~~v~~~~~d~~~~~~~~~~~~~  143 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-------RNIVPILGDATKPEEYRALVPK  143 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-------TTEEEEECCTTCGGGGTTTCCC
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-------CCCEEEEccCCCcchhhcccCC
Confidence            567889999999999999999998766789999999999999999988762       58999999987621   12358


Q ss_pred             ccEEEecCCCCc----hHHHHHhhcccCcEEEEEEc
Q psy7829         208 YDVIYYGGCVSE----VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       208 fD~I~~~~~~~~----~~~~~~~~LkpgG~l~~~~~  239 (511)
                      ||+|+++.+...    +..++.+.|||||.+++.+.
T Consensus       144 ~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  179 (227)
T 1g8a_A          144 VDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVK  179 (227)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            999999877543    25789999999999998643

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.39  E-value=2.3e-12  Score=121.30  Aligned_cols=100  Identities=18%  Similarity=0.179  Sum_probs=84.9

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ..++.+|||+|||+|.++..+++..  ..+|+++|+++.+++.+++++..       ..+++++++|+.....+.++||+
T Consensus        91 ~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~  161 (254)
T 1xtp_A           91 GHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAG-------MPVGKFILASMETATLPPNTYDL  161 (254)
T ss_dssp             TCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTT-------SSEEEEEESCGGGCCCCSSCEEE
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhcc-------CCceEEEEccHHHCCCCCCCeEE
Confidence            4578899999999999999999886  45799999999999999998765       24799999998865445578999


Q ss_pred             EEecCCCCch--------HHHHHhhcccCcEEEEEEc
Q psy7829         211 IYYGGCVSEV--------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       211 I~~~~~~~~~--------~~~~~~~LkpgG~l~~~~~  239 (511)
                      |++..+++++        ++++.+.|||||.+++...
T Consensus       162 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          162 IVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            9999888766        3678999999999999764

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.39  E-value=1.2e-12  Score=121.88  Aligned_cols=100  Identities=16%  Similarity=0.232  Sum_probs=82.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY  212 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~  212 (511)
                      ++.+|||+|||+|..+..+++.   ..+|+++|+|+.+++.|++++...+    ...+++++++|+.+.. ..++||+|+
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~-~~~~fD~v~  137 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASP---ERFVVGLDISESALAKANETYGSSP----KAEYFSFVKEDVFTWR-PTELFDLIF  137 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBT---TEEEEEECSCHHHHHHHHHHHTTSG----GGGGEEEECCCTTTCC-CSSCEEEEE
T ss_pred             CCCCEEEeCCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHhhccC----CCcceEEEECchhcCC-CCCCeeEEE
Confidence            4459999999999999988763   4679999999999999999987643    2457999999998754 346899999


Q ss_pred             ecCCCCch--------HHHHHhhcccCcEEEEEEcc
Q psy7829         213 YGGCVSEV--------PSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       213 ~~~~~~~~--------~~~~~~~LkpgG~l~~~~~~  240 (511)
                      +..+++++        .+++.+.|||||.+++....
T Consensus       138 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  173 (235)
T 3lcc_A          138 DYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYP  173 (235)
T ss_dssp             EESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEec
Confidence            99887654        37889999999999986543

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.39  E-value=4.6e-13  Score=124.66  Aligned_cols=98  Identities=16%  Similarity=0.195  Sum_probs=78.6

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC--CCCCCCc
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG--YLPEAPY  208 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~f  208 (511)
                      ..+|.+|||||||+|..+..+++.. + .++++||+|+.+++.|+++....      ..++.++.+|+...  ..++++|
T Consensus        58 ~~~G~rVLdiG~G~G~~~~~~~~~~-~-~~v~~id~~~~~~~~a~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~F  129 (236)
T 3orh_A           58 SSKGGRVLEVGFGMAIAASKVQEAP-I-DEHWIIECNDGVFQRLRDWAPRQ------THKVIPLKGLWEDVAPTLPDGHF  129 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHTTSC-E-EEEEEEECCHHHHHHHHHHGGGC------SSEEEEEESCHHHHGGGSCTTCE
T ss_pred             ccCCCeEEEECCCccHHHHHHHHhC-C-cEEEEEeCCHHHHHHHHHHHhhC------CCceEEEeehHHhhcccccccCC
Confidence            4689999999999999999998864 3 57999999999999999998874      34788999987532  2345789


Q ss_pred             cEEEecCCCC-----c------hHHHHHhhcccCcEEEE
Q psy7829         209 DVIYYGGCVS-----E------VPSRVLNQLKKGGRILA  236 (511)
Q Consensus       209 D~I~~~~~~~-----~------~~~~~~~~LkpgG~l~~  236 (511)
                      |.|+.+....     +      +.+++.++|||||+|++
T Consensus       130 D~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f  168 (236)
T 3orh_A          130 DGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY  168 (236)
T ss_dssp             EEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred             ceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEE
Confidence            9998765432     2      23678999999999976

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.39  E-value=8.6e-13  Score=133.90  Aligned_cols=174  Identities=16%  Similarity=0.191  Sum_probs=118.7

Q ss_pred             CCCCCCCCcccCCCccHHHHHHHHHHcCCCCC--HHHHHHHHhCCCCCccCCCCCCCcccccCCCcccchhHHHHHHHHH
Q psy7829          49 IPPPDNLNHFKNEGTCQTDLVNHLRDIGKIRT--ERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAEN  126 (511)
Q Consensus        49 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~~a~~~~~r~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~  126 (511)
                      ..+++..+++|+...+...+.+.|...|+...  +-...++.......+.....|..+.+.+       +......+...
T Consensus       169 ~~~~~~~~Rvn~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~-------qd~~s~~~~~~  241 (429)
T 1sqg_A          169 NQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTV-------QDASAQGCMTW  241 (429)
T ss_dssp             TSCCCEEEEECTTTCCHHHHHHHHHHTTCCEECCTTCTTEEEESSCCCGGGSTTGGGTSEEE-------CCHHHHTHHHH
T ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHHhCCCceeecCCCCCEEEECCCCCcccChHHhCCCeEe-------eCHHHHHHHHH
Confidence            44556778899988899999999988775211  0000011000001111112333332222       22233334445


Q ss_pred             HhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC--CC
Q psy7829         127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY--LP  204 (511)
Q Consensus       127 l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~  204 (511)
                      +.  ..++.+|||+|||+|..+..+++.. ++++|+++|+++.+++.+++++++.|     . +++++++|+....  ..
T Consensus       242 l~--~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~~~~~l~~~~~~~~~~g-----~-~~~~~~~D~~~~~~~~~  312 (429)
T 1sqg_A          242 LA--PQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLG-----M-KATVKQGDGRYPSQWCG  312 (429)
T ss_dssp             HC--CCTTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHHTT-----C-CCEEEECCTTCTHHHHT
T ss_pred             cC--CCCcCeEEEECCCchHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHHcC-----C-CeEEEeCchhhchhhcc
Confidence            54  6789999999999999999999987 45899999999999999999999864     2 5789999987643  23


Q ss_pred             CCCccEEEecCCCC----------------------------chHHHHHhhcccCcEEEEEE
Q psy7829         205 EAPYDVIYYGGCVS----------------------------EVPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       205 ~~~fD~I~~~~~~~----------------------------~~~~~~~~~LkpgG~l~~~~  238 (511)
                      .++||+|+++.++.                            .+++.+.+.|||||+++++.
T Consensus       313 ~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvyst  374 (429)
T 1sqg_A          313 EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT  374 (429)
T ss_dssp             TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             cCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            36899999988763                            23467889999999999865

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.39  E-value=5.7e-13  Score=124.44  Aligned_cols=102  Identities=16%  Similarity=0.143  Sum_probs=83.8

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCC---CCCc
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLP---EAPY  208 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~f  208 (511)
                      .++.+|||+|||+|..+..++... +..+|+++|+|+.+++.|++++...+     .++++++++|+.+....   .++|
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~f  142 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQ-----LENTTFCHDRAETFGQRKDVRESY  142 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHT-----CSSEEEEESCHHHHTTCTTTTTCE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCEEEEeccHHHhcccccccCCc
Confidence            467899999999999999999864 67899999999999999999998864     45799999998653321   4789


Q ss_pred             cEEEecCCCC--chHHHHHhhcccCcEEEEEEc
Q psy7829         209 DVIYYGGCVS--EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       209 D~I~~~~~~~--~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      |+|++.....  .+.+.+.+.|||||.+++..+
T Consensus       143 D~V~~~~~~~~~~~l~~~~~~LkpgG~l~~~~g  175 (240)
T 1xdz_A          143 DIVTARAVARLSVLSELCLPLVKKNGLFVALKA  175 (240)
T ss_dssp             EEEEEECCSCHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             cEEEEeccCCHHHHHHHHHHhcCCCCEEEEEeC
Confidence            9999987432  345788899999999998643

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.39  E-value=1.3e-12  Score=121.18  Aligned_cols=99  Identities=23%  Similarity=0.304  Sum_probs=82.7

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC----CCCCCC
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE----GYLPEA  206 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~----~~~~~~  206 (511)
                      +.++.+|||+|||+|.++..+++..+ .++|+++|+++.+++.+++++..       .+++.++.+|+..    .... +
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~-------~~~v~~~~~d~~~~~~~~~~~-~  142 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAE-------RENIIPILGDANKPQEYANIV-E  142 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTT-------CTTEEEEECCTTCGGGGTTTS-C
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhc-------CCCeEEEECCCCCcccccccC-c
Confidence            56788999999999999999999974 67999999999999999998765       2589999999876    3333 6


Q ss_pred             CccEEEecCCCC----chHHHHHhhcccCcEEEEEE
Q psy7829         207 PYDVIYYGGCVS----EVPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       207 ~fD~I~~~~~~~----~~~~~~~~~LkpgG~l~~~~  238 (511)
                      +||+|+.+.+-.    .+.+++.+.|||||.+++.+
T Consensus       143 ~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  178 (230)
T 1fbn_A          143 KVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             CEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cEEEEEEecCChhHHHHHHHHHHHhCCCCcEEEEEE
Confidence            899999764433    23688999999999999964

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.39  E-value=9.1e-13  Score=123.33  Aligned_cols=108  Identities=11%  Similarity=0.083  Sum_probs=80.7

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      ....+++.+.  +.++.+|||+|||+|.++..+++..   .+|+++|+|+.|++.|++++...        .+.....++
T Consensus        33 ~~~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~g---~~V~gvD~S~~ml~~Ar~~~~~~--------~v~~~~~~~   99 (261)
T 3iv6_A           33 DRENDIFLEN--IVPGSTVAVIGASTRFLIEKALERG---ASVTVFDFSQRMCDDLAEALADR--------CVTIDLLDI   99 (261)
T ss_dssp             HHHHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTSSS--------CCEEEECCT
T ss_pred             HHHHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHhc--------cceeeeeec
Confidence            4555666665  7789999999999999999999874   47999999999999999987652        123222232


Q ss_pred             CC--CCCCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEEEcc
Q psy7829         199 RE--GYLPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       199 ~~--~~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~~~~  240 (511)
                      ..  .....++||+|+++.+++++        +.++.++| |||++++++..
T Consensus       100 ~~~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~  150 (261)
T 3iv6_A          100 TAEIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL  150 (261)
T ss_dssp             TSCCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred             ccccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence            21  11124689999999887654        36778899 99999998764

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.39  E-value=2.2e-12  Score=122.56  Aligned_cols=105  Identities=21%  Similarity=0.150  Sum_probs=89.8

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCcc
Q psy7829         130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYD  209 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  209 (511)
                      .+.++.+|||+|||+|.++..+++.. +.++|+++|+++.+++.|++|++.++     .+++.++++|+.+. +..+.||
T Consensus       116 ~~~~~~~VLDlgcG~G~~s~~la~~~-~~~~V~~vD~s~~av~~a~~n~~~n~-----l~~~~~~~~d~~~~-~~~~~~D  188 (272)
T 3a27_A          116 ISNENEVVVDMFAGIGYFTIPLAKYS-KPKLVYAIEKNPTAYHYLCENIKLNK-----LNNVIPILADNRDV-ELKDVAD  188 (272)
T ss_dssp             SCCTTCEEEETTCTTTTTHHHHHHHT-CCSEEEEEECCHHHHHHHHHHHHHTT-----CSSEEEEESCGGGC-CCTTCEE
T ss_pred             hcCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCEEEEECChHHc-CccCCce
Confidence            36788999999999999999999986 46789999999999999999999864     45799999999875 3356899


Q ss_pred             EEEecCCC--CchHHHHHhhcccCcEEEEEEccC
Q psy7829         210 VIYYGGCV--SEVPSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       210 ~I~~~~~~--~~~~~~~~~~LkpgG~l~~~~~~~  241 (511)
                      +|+++.+.  ..+...+.+.|||||.+++.+...
T Consensus       189 ~Vi~d~p~~~~~~l~~~~~~LkpgG~l~~s~~~~  222 (272)
T 3a27_A          189 RVIMGYVHKTHKFLDKTFEFLKDRGVIHYHETVA  222 (272)
T ss_dssp             EEEECCCSSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             EEEECCcccHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence            99999875  346688999999999999876643

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.38  E-value=1.2e-12  Score=123.38  Aligned_cols=98  Identities=20%  Similarity=0.304  Sum_probs=83.2

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEE
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVI  211 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I  211 (511)
                      .++.+|||+|||+|.++..+++.. + .+|+++|+|+.+++.|+++..        ..+++++++|+.....+.++||+|
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~~d~~~~~~~~~~fD~v  112 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHG-A-KKVLGIDLSERMLTEAKRKTT--------SPVVCYEQKAIEDIAIEPDAYNVV  112 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTT-C-SEEEEEESCHHHHHHHHHHCC--------CTTEEEEECCGGGCCCCTTCEEEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcC-C-CEEEEEECCHHHHHHHHHhhc--------cCCeEEEEcchhhCCCCCCCeEEE
Confidence            378899999999999999999874 3 389999999999999998864        247999999998655456899999


Q ss_pred             EecCCCCch------HHHHHhhcccCcEEEEEEc
Q psy7829         212 YYGGCVSEV------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       212 ~~~~~~~~~------~~~~~~~LkpgG~l~~~~~  239 (511)
                      ++..+++++      ++++.+.|||||.+++.+.
T Consensus       113 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  146 (253)
T 3g5l_A          113 LSSLALHYIASFDDICKKVYINLKSSGSFIFSVE  146 (253)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeC
Confidence            999887654      3789999999999999754

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.38  E-value=2.6e-12  Score=119.28  Aligned_cols=106  Identities=19%  Similarity=0.233  Sum_probs=86.4

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ++++.+|||+|||+|.++..+++.   ..+|+++|+++.+++.+++++...+.......+++++++|+.......++||+
T Consensus        28 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~  104 (235)
T 3sm3_A           28 LQEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDF  104 (235)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeE
Confidence            568899999999999999999987   34799999999999999999887542111134689999999875555688999


Q ss_pred             EEecCCCCch---------HHHHHhhcccCcEEEEEEc
Q psy7829         211 IYYGGCVSEV---------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       211 I~~~~~~~~~---------~~~~~~~LkpgG~l~~~~~  239 (511)
                      |++..+++++         ++++.+.|||||.+++...
T Consensus       105 v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (235)
T 3sm3_A          105 AVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF  142 (235)
T ss_dssp             EEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence            9998877543         4678999999999998654

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.38  E-value=9.1e-13  Score=128.25  Aligned_cols=120  Identities=14%  Similarity=0.158  Sum_probs=89.1

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCc--CCCCCeEEEEc
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDL--LDSGRVRIVEA  196 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~--~~~~~v~~~~~  196 (511)
                      +...+++.+....+++.+|||+|||+|..+..+++.  +..+++++|+|+.+++.|+++....+...  ....+++++++
T Consensus        20 l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~   97 (313)
T 3bgv_A           20 LIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITA   97 (313)
T ss_dssp             HHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEEC
T ss_pred             HHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEe
Confidence            344455555534457889999999999999999874  45689999999999999999876531000  01347999999


Q ss_pred             cCCCCC----C--CCCCccEEEecCCCCch----------HHHHHhhcccCcEEEEEEcc
Q psy7829         197 DAREGY----L--PEAPYDVIYYGGCVSEV----------PSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       197 d~~~~~----~--~~~~fD~I~~~~~~~~~----------~~~~~~~LkpgG~l~~~~~~  240 (511)
                      |+....    .  ..++||+|++..+++++          ++++.+.|||||.+++.+..
T Consensus        98 D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  157 (313)
T 3bgv_A           98 DSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN  157 (313)
T ss_dssp             CTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             cccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            998643    2  23589999999888655          26788999999999997653

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.38  E-value=5.7e-13  Score=125.59  Aligned_cols=99  Identities=13%  Similarity=0.161  Sum_probs=76.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC----CCCC--CC
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE----GYLP--EA  206 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~----~~~~--~~  206 (511)
                      ++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++++..++    ...+++++++|+.+    .+..  .+
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~~~~  139 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNN----LSDLIKVVKVPQKTLLMDALKEESEI  139 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEECCTTCSSTTTSTTCCSC
T ss_pred             CCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHcC----CCccEEEEEcchhhhhhhhhhcccCC
Confidence            57799999999999999999886 56789999999999999999998864    23469999999754    2221  25


Q ss_pred             CccEEEecCCCCchH---------------------HHHHhhcccCcEEEE
Q psy7829         207 PYDVIYYGGCVSEVP---------------------SRVLNQLKKGGRILA  236 (511)
Q Consensus       207 ~fD~I~~~~~~~~~~---------------------~~~~~~LkpgG~l~~  236 (511)
                      +||+|++++++....                     ..+.++|||||.+.+
T Consensus       140 ~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~  190 (254)
T 2h00_A          140 IYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEF  190 (254)
T ss_dssp             CBSEEEECCCCC-------------------------CTTTTHHHHTHHHH
T ss_pred             cccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEE
Confidence            899999997764321                     234567788887765

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.38  E-value=2.8e-12  Score=123.10  Aligned_cols=105  Identities=20%  Similarity=0.212  Sum_probs=86.7

Q ss_pred             HHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC
Q psy7829         123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY  202 (511)
Q Consensus       123 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  202 (511)
                      +++.+.  ..++.+|||+|||+|.++..+++..   .+|+++|+|+.+++.+++++...+     . +++++++|+....
T Consensus       112 ~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~g---~~v~~vD~s~~~~~~a~~~~~~~~-----~-~~~~~~~d~~~~~  180 (286)
T 3m70_A          112 VVDAAK--IISPCKVLDLGCGQGRNSLYLSLLG---YDVTSWDHNENSIAFLNETKEKEN-----L-NISTALYDINAAN  180 (286)
T ss_dssp             HHHHHH--HSCSCEEEEESCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT-----C-CEEEEECCGGGCC
T ss_pred             HHHHhh--ccCCCcEEEECCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHcC-----C-ceEEEEecccccc
Confidence            444554  3478899999999999999999873   379999999999999999998854     2 8999999998754


Q ss_pred             CCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEEEc
Q psy7829         203 LPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       203 ~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~~~  239 (511)
                      . .++||+|+++.+++++        .+++.+.|||||.+++...
T Consensus       181 ~-~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  224 (286)
T 3m70_A          181 I-QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA  224 (286)
T ss_dssp             C-CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             c-cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            4 5889999999887643        3778999999999887544

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.38  E-value=5.8e-13  Score=120.94  Aligned_cols=96  Identities=17%  Similarity=0.165  Sum_probs=80.9

Q ss_pred             CCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEe
Q psy7829         134 GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYY  213 (511)
Q Consensus       134 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~  213 (511)
                      +.+|||+|||+|.++..+++..   .+|+++|+++.+++.++++.          ++++++++|+.+.....++||+|++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~----------~~~~~~~~d~~~~~~~~~~fD~v~~  108 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLG---HQIEGLEPATRLVELARQTH----------PSVTFHHGTITDLSDSPKRWAGLLA  108 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTT---CCEEEECCCHHHHHHHHHHC----------TTSEEECCCGGGGGGSCCCEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhC----------CCCeEEeCcccccccCCCCeEEEEe
Confidence            8899999999999999999873   37999999999999999873          2689999999865445588999999


Q ss_pred             cCCCCch--------HHHHHhhcccCcEEEEEEccCC
Q psy7829         214 GGCVSEV--------PSRVLNQLKKGGRILAPIGPMD  242 (511)
Q Consensus       214 ~~~~~~~--------~~~~~~~LkpgG~l~~~~~~~~  242 (511)
                      ..+++++        ++++.+.|||||.+++.+....
T Consensus       109 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~  145 (203)
T 3h2b_A          109 WYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGP  145 (203)
T ss_dssp             ESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCS
T ss_pred             hhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence            8887665        3788999999999999765443

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.37  E-value=1.6e-12  Score=123.12  Aligned_cols=105  Identities=19%  Similarity=0.259  Sum_probs=85.5

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCC
Q psy7829         120 IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAR  199 (511)
Q Consensus       120 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  199 (511)
                      ...+.+.+.....++.+|||+|||+|.++..+++..   .+|+++|+|+.+++.|++++.          +++++++|+.
T Consensus        37 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~----------~~~~~~~d~~  103 (263)
T 3pfg_A           37 AADLAALVRRHSPKAASLLDVACGTGMHLRHLADSF---GTVEGLELSADMLAIARRRNP----------DAVLHHGDMR  103 (263)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTS---SEEEEEESCHHHHHHHHHHCT----------TSEEEECCTT
T ss_pred             HHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCC----------CCEEEECChH
Confidence            344555555456678899999999999999998874   379999999999999998743          5899999998


Q ss_pred             CCCCCCCCccEEEecC-CCCch---------HHHHHhhcccCcEEEEEE
Q psy7829         200 EGYLPEAPYDVIYYGG-CVSEV---------PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       200 ~~~~~~~~fD~I~~~~-~~~~~---------~~~~~~~LkpgG~l~~~~  238 (511)
                      +... .++||+|++.. +++++         ++++.+.|||||.+++..
T Consensus       104 ~~~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~  151 (263)
T 3pfg_A          104 DFSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEP  151 (263)
T ss_dssp             TCCC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             HCCc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            7544 58899999987 66655         367899999999999963

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.37  E-value=6e-12  Score=111.92  Aligned_cols=112  Identities=21%  Similarity=0.263  Sum_probs=90.1

Q ss_pred             cchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEE
Q psy7829         114 MNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI  193 (511)
Q Consensus       114 ~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~  193 (511)
                      ...+.+...+++.+.  ..++.+|||+|||+|.++..+++   +..+++++|+++.+++.+++++..++     .+++++
T Consensus        18 ~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~~~~   87 (183)
T 2yxd_A           18 ITKEEIRAVSIGKLN--LNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFN-----IKNCQI   87 (183)
T ss_dssp             CCCHHHHHHHHHHHC--CCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTT-----CCSEEE
T ss_pred             cCHHHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcC-----CCcEEE
Confidence            445567777777775  67889999999999999999988   45789999999999999999998864     468999


Q ss_pred             EEccCCCCCCCCCCccEEEecCCCCch---HHHHHhhcccCcEEEEEEc
Q psy7829         194 VEADAREGYLPEAPYDVIYYGGCVSEV---PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       194 ~~~d~~~~~~~~~~fD~I~~~~~~~~~---~~~~~~~LkpgG~l~~~~~  239 (511)
                      +++|+.+.. +.++||+|+++.+ ...   .+.+.+.  |||.+++...
T Consensus        88 ~~~d~~~~~-~~~~~D~i~~~~~-~~~~~~l~~~~~~--~gG~l~~~~~  132 (183)
T 2yxd_A           88 IKGRAEDVL-DKLEFNKAFIGGT-KNIEKIIEILDKK--KINHIVANTI  132 (183)
T ss_dssp             EESCHHHHG-GGCCCSEEEECSC-SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred             EECCccccc-cCCCCcEEEECCc-ccHHHHHHHHhhC--CCCEEEEEec
Confidence            999987633 3368999999887 433   3555565  9999999764

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.37  E-value=5.4e-12  Score=121.74  Aligned_cols=103  Identities=19%  Similarity=0.221  Sum_probs=85.9

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCcc
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYD  209 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD  209 (511)
                      +.++.+|||+|||+|..+..+++..  ..+|+++|+|+.+++.|++++...+    ...+++++++|+..... ..++||
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~fD  135 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARNMK----RRFKVFFRAQDSYGRHMDLGKEFD  135 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHTSC----CSSEEEEEESCTTTSCCCCSSCEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHhcC----CCccEEEEECCccccccCCCCCcC
Confidence            5788999999999999999988863  4589999999999999999988754    23579999999986443 457899


Q ss_pred             EEEecCCCCc----------hHHHHHhhcccCcEEEEEEc
Q psy7829         210 VIYYGGCVSE----------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       210 ~I~~~~~~~~----------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      +|++..++++          +++++.+.|||||.+++.+.
T Consensus       136 ~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  175 (298)
T 1ri5_A          136 VISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP  175 (298)
T ss_dssp             EEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            9999988754          23678999999999999764

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.37  E-value=9.8e-13  Score=121.88  Aligned_cols=103  Identities=21%  Similarity=0.256  Sum_probs=85.0

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC----C--
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL----P--  204 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~--  204 (511)
                      ..++.+|||+|||+|+.+..+++.+++.++|+++|+++.+++.|+++++..+    ..++++++.+|+.+...    .  
T Consensus        67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g----~~~~i~~~~~d~~~~~~~~~~~~~  142 (229)
T 2avd_A           67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE----AEHKIDLRLKPALETLDELLAAGE  142 (229)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT----CTTTEEEEESCHHHHHHHHHHTTC
T ss_pred             hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC----CCCeEEEEEcCHHHHHHHHHhcCC
Confidence            4578899999999999999999987547899999999999999999998865    34689999999854211    1  


Q ss_pred             CCCccEEEecCCCC---chHHHHHhhcccCcEEEEE
Q psy7829         205 EAPYDVIYYGGCVS---EVPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       205 ~~~fD~I~~~~~~~---~~~~~~~~~LkpgG~l~~~  237 (511)
                      .++||+|+++.+..   .+.+.+.+.|+|||.+++.
T Consensus       143 ~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~  178 (229)
T 2avd_A          143 AGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVL  178 (229)
T ss_dssp             TTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            16799999987754   3458899999999999873

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.37  E-value=2.8e-12  Score=119.15  Aligned_cols=102  Identities=29%  Similarity=0.337  Sum_probs=84.2

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC---CCCCC
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY---LPEAP  207 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~  207 (511)
                      +.++.+|||+|||+|.++..+++..++.++|+++|+++.+++.+.++++.+       .+++++++|+.+..   ...++
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-------~~v~~~~~d~~~~~~~~~~~~~  147 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-------TNIIPVIEDARHPHKYRMLIAM  147 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-------TTEEEECSCTTCGGGGGGGCCC
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-------CCeEEEEcccCChhhhcccCCc
Confidence            567899999999999999999999867789999999999988888887662       47999999997631   13468


Q ss_pred             ccEEEecCCCCc----hHHHHHhhcccCcEEEEEEc
Q psy7829         208 YDVIYYGGCVSE----VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       208 fD~I~~~~~~~~----~~~~~~~~LkpgG~l~~~~~  239 (511)
                      ||+|+++.+...    +..++.+.|||||.+++.+.
T Consensus       148 ~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~~~  183 (233)
T 2ipx_A          148 VDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIK  183 (233)
T ss_dssp             EEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEEEcCCCccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence            999999876432    24678999999999999755

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.37  E-value=6.1e-13  Score=123.54  Aligned_cols=103  Identities=19%  Similarity=0.324  Sum_probs=83.9

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC----CCC-
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY----LPE-  205 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~-  205 (511)
                      ..++.+|||+|||+|+.+..+++.+++.++|+++|+++.+++.|++++...+    ..++++++.+|+.+..    ... 
T Consensus        70 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g----~~~~i~~~~~d~~~~l~~l~~~~~  145 (232)
T 3cbg_A           70 LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAG----VAEKISLRLGPALATLEQLTQGKP  145 (232)
T ss_dssp             HHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT----CGGGEEEEESCHHHHHHHHHTSSS
T ss_pred             hcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEcCHHHHHHHHHhcCC
Confidence            3467899999999999999999987557899999999999999999998765    2357999999975321    112 


Q ss_pred             -CCccEEEecCCCCc---hHHHHHhhcccCcEEEEE
Q psy7829         206 -APYDVIYYGGCVSE---VPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       206 -~~fD~I~~~~~~~~---~~~~~~~~LkpgG~l~~~  237 (511)
                       ++||+|+++.....   +.+.+.+.|+|||.+++.
T Consensus       146 ~~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~  181 (232)
T 3cbg_A          146 LPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVID  181 (232)
T ss_dssp             CCCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence             68999999876443   357889999999999884

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.36  E-value=2.6e-12  Score=122.82  Aligned_cols=103  Identities=29%  Similarity=0.443  Sum_probs=85.2

Q ss_pred             HHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC
Q psy7829         122 DAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG  201 (511)
Q Consensus       122 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  201 (511)
                      .+++.+.  ..++.+|||+|||+|.++..+++   +..+|+|+|+|+.+++.++++.          ++++++++|+...
T Consensus        48 ~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~----------~~~~~~~~d~~~~  112 (279)
T 3ccf_A           48 DLLQLLN--PQPGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIEKARQNY----------PHLHFDVADARNF  112 (279)
T ss_dssp             HHHHHHC--CCTTCEEEEETCTTSHHHHHHHH---TTCEEEEEESCHHHHHHHHHHC----------TTSCEEECCTTTC
T ss_pred             HHHHHhC--CCCCCEEEEecCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHhhC----------CCCEEEECChhhC
Confidence            3455554  66889999999999999999998   3568999999999999998874          2688999999874


Q ss_pred             CCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEEcc
Q psy7829         202 YLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       202 ~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~~  240 (511)
                      .. .++||+|++..+++++      ++++.+.|||||++++.+..
T Consensus       113 ~~-~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~  156 (279)
T 3ccf_A          113 RV-DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGG  156 (279)
T ss_dssp             CC-SSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             Cc-CCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecC
Confidence            43 4789999999888654      47899999999999986553

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.36  E-value=4.1e-12  Score=119.05  Aligned_cols=108  Identities=13%  Similarity=0.174  Sum_probs=85.0

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCc---CCCCCeEEEEccCCCCC---CC
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDL---LDSGRVRIVEADAREGY---LP  204 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~---~~~~~v~~~~~d~~~~~---~~  204 (511)
                      +.++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.+++++..+....   .+.+|++++++|+.+..   ..
T Consensus        47 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~  125 (246)
T 2vdv_E           47 MTKKVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFE  125 (246)
T ss_dssp             BSCCEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcc
Confidence            4577899999999999999999986 67799999999999999999887640000   02358999999987632   23


Q ss_pred             CCCccEEEecCCCC--------------chHHHHHhhcccCcEEEEEEc
Q psy7829         205 EAPYDVIYYGGCVS--------------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       205 ~~~fD~I~~~~~~~--------------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      .+.+|.|++..+-.              .+..++.+.|||||.|++...
T Consensus       126 ~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td  174 (246)
T 2vdv_E          126 KGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD  174 (246)
T ss_dssp             TTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred             ccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence            57899998765544              466889999999999998543

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.35  E-value=1.7e-12  Score=125.08  Aligned_cols=152  Identities=14%  Similarity=0.131  Sum_probs=103.7

Q ss_pred             CCCCCcccCCCccHHHHHHHHHHcCCCCCH--HHHHHHHhCCCCCccC------------------CCCCCCcccccCCC
Q psy7829          52 PDNLNHFKNEGTCQTDLVNHLRDIGKIRTE--RVAQAFYKVDRGNFAN------------------EEPYQDVSASLGYA  111 (511)
Q Consensus        52 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~a~~~~~r~~~~~------------------~~~y~~~~~~~~~~  111 (511)
                      ++..+++|+...+..++.+.|...|+...+  -....++......|..                  ...|..+.+.++..
T Consensus        10 ~p~~lRvN~lk~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~G~~~~Qd~   89 (309)
T 2b9e_A           10 LPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDR   89 (309)
T ss_dssp             CCEEEEECTTTCCHHHHHHHHHHTTCEEEEECSSHHHHHTCCTTEEEECSSSTTEEEECTTCCCTTSHHHHTTSEEECCT
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHhCCCeeeeccccccccccccccccccccCCCceEEeCCCCCcccChHHHCCeEEEECH
Confidence            456788999999999999999988752111  1122333222111110                  01222222333222


Q ss_pred             cccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCe
Q psy7829         112 GVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRV  191 (511)
Q Consensus       112 ~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v  191 (511)
                      .++    +   +...+.  ++++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.+++|++++|     ..++
T Consensus        90 ~s~----l---~~~~l~--~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g-----~~~v  155 (309)
T 2b9e_A           90 ASC----L---PAMLLD--PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG-----VSCC  155 (309)
T ss_dssp             GGG----H---HHHHHC--CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT-----CCSE
T ss_pred             HHH----H---HHHHhC--CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeE
Confidence            222    1   233443  7789999999999999999999988667899999999999999999999864     5689


Q ss_pred             EEEEccCCCCCCC---CCCccEEEecCCC
Q psy7829         192 RIVEADAREGYLP---EAPYDVIYYGGCV  217 (511)
Q Consensus       192 ~~~~~d~~~~~~~---~~~fD~I~~~~~~  217 (511)
                      +++++|+.+....   ..+||.|+++.++
T Consensus       156 ~~~~~D~~~~~~~~~~~~~fD~Vl~D~Pc  184 (309)
T 2b9e_A          156 ELAEEDFLAVSPSDPRYHEVHYILLDPSC  184 (309)
T ss_dssp             EEEECCGGGSCTTCGGGTTEEEEEECCCC
T ss_pred             EEEeCChHhcCccccccCCCCEEEEcCCc
Confidence            9999998764322   1579999998776

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.35  E-value=4.3e-12  Score=116.62  Aligned_cols=112  Identities=15%  Similarity=0.070  Sum_probs=83.0

Q ss_pred             HHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC
Q psy7829         123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY  202 (511)
Q Consensus       123 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  202 (511)
                      .++.+.  ..++.+|||+|||+|.++..+++.. |..+|+|+|+|+.+++.+.+++.+.-. ....++++++++|+.+..
T Consensus        19 ~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~-~~~~~~v~~~~~d~~~l~   94 (218)
T 3mq2_A           19 EFEQLR--SQYDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPA-KGGLPNLLYLWATAERLP   94 (218)
T ss_dssp             HHHHHH--TTSSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGG-GTCCTTEEEEECCSTTCC
T ss_pred             HHHHhh--ccCCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhh-hcCCCceEEEecchhhCC
Confidence            455555  6788999999999999999999985 778999999999988864443322100 013568999999998754


Q ss_pred             CCCCCccEEEecCCC-----------CchHHHHHhhcccCcEEEEEEc
Q psy7829         203 LPEAPYDVIYYGGCV-----------SEVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       203 ~~~~~fD~I~~~~~~-----------~~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      ...+. |.|++..+.           ..+++++.++|||||.+++.+.
T Consensus        95 ~~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  141 (218)
T 3mq2_A           95 PLSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALN  141 (218)
T ss_dssp             SCCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEec
Confidence            44455 777644322           3456899999999999999654

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.35  E-value=4.4e-12  Score=118.49  Aligned_cols=100  Identities=25%  Similarity=0.364  Sum_probs=82.3

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCcc
Q psy7829         130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYD  209 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  209 (511)
                      .++++.+|||+|||+|.++..+++.    .+++++|+|+.+++.|++++...      ..+++++++|+.+...+ ++||
T Consensus        30 ~~~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~d~~~~~~~-~~fD   98 (243)
T 3d2l_A           30 QVEPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMET------NRHVDFWVQDMRELELP-EPVD   98 (243)
T ss_dssp             HSCTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHT------TCCCEEEECCGGGCCCS-SCEE
T ss_pred             HcCCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhc------CCceEEEEcChhhcCCC-CCcC
Confidence            4567899999999999999988876    47999999999999999998764      24799999998765433 7899


Q ss_pred             EEEecC-CCCch---------HHHHHhhcccCcEEEEEEcc
Q psy7829         210 VIYYGG-CVSEV---------PSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       210 ~I~~~~-~~~~~---------~~~~~~~LkpgG~l~~~~~~  240 (511)
                      +|++.. +++++         .+++.+.|||||.+++.+..
T Consensus        99 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  139 (243)
T 3d2l_A           99 AITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHS  139 (243)
T ss_dssp             EEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence            999875 55443         36788999999999987653

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.35  E-value=3.5e-12  Score=116.52  Aligned_cols=96  Identities=27%  Similarity=0.397  Sum_probs=80.8

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCcc
Q psy7829         130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYD  209 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  209 (511)
                      .+.++.+|||+|||+|.++..+++.   ..+|+++|+|+.+++.+++++           ++.++.+|+.... ..++||
T Consensus        40 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~d~~~~~-~~~~fD  104 (211)
T 3e23_A           40 ELPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL-----------GRPVRTMLFHQLD-AIDAYD  104 (211)
T ss_dssp             TSCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH-----------TSCCEECCGGGCC-CCSCEE
T ss_pred             hcCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc-----------CCceEEeeeccCC-CCCcEE
Confidence            4668899999999999999999987   347999999999999999886           2567788887654 568899


Q ss_pred             EEEecCCCCchH--------HHHHhhcccCcEEEEEEcc
Q psy7829         210 VIYYGGCVSEVP--------SRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       210 ~I~~~~~~~~~~--------~~~~~~LkpgG~l~~~~~~  240 (511)
                      +|++..+++++.        +++.+.|||||.+++.+..
T Consensus       105 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  143 (211)
T 3e23_A          105 AVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKS  143 (211)
T ss_dssp             EEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence            999998886553        6889999999999997654

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.35  E-value=1.8e-12  Score=121.12  Aligned_cols=100  Identities=16%  Similarity=0.139  Sum_probs=83.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY  212 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~  212 (511)
                      ++.+|||+|||+|.++..+++..  ..+|+++|+++.+++.|++++...+     ..+++++.+|+.......++||+|+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~fD~v~  151 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEG-----KRVRNYFCCGLQDFTPEPDSYDVIW  151 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGG-----GGEEEEEECCGGGCCCCSSCEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcC-----CceEEEEEcChhhcCCCCCCEEEEE
Confidence            58899999999999999988875  4589999999999999999987642     3468999999876555556899999


Q ss_pred             ecCCCCch--------HHHHHhhcccCcEEEEEEc
Q psy7829         213 YGGCVSEV--------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       213 ~~~~~~~~--------~~~~~~~LkpgG~l~~~~~  239 (511)
                      +...++++        ++++.+.|||||++++...
T Consensus       152 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  186 (241)
T 2ex4_A          152 IQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDN  186 (241)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence            99887544        4678899999999998654

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.35  E-value=3.5e-12  Score=119.13  Aligned_cols=105  Identities=20%  Similarity=0.263  Sum_probs=85.2

Q ss_pred             HHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC
Q psy7829         123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY  202 (511)
Q Consensus       123 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  202 (511)
                      +...+.  ..++.+|||+|||+|.++..+++.. . .+++++|+++.+++.++++...        .+++++++|+....
T Consensus        35 l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~d~~~~~  102 (243)
T 3bkw_A           35 LRAMLP--EVGGLRIVDLGCGFGWFCRWAHEHG-A-SYVLGLDLSEKMLARARAAGPD--------TGITYERADLDKLH  102 (243)
T ss_dssp             HHHHSC--CCTTCEEEEETCTTCHHHHHHHHTT-C-SEEEEEESCHHHHHHHHHTSCS--------SSEEEEECCGGGCC
T ss_pred             HHHhcc--ccCCCEEEEEcCcCCHHHHHHHHCC-C-CeEEEEcCCHHHHHHHHHhccc--------CCceEEEcChhhcc
Confidence            444443  4578899999999999999998873 2 3899999999999999987543        36999999998654


Q ss_pred             CCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEEc
Q psy7829         203 LPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       203 ~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~  239 (511)
                      .+.++||+|++..+++++      ++++.+.|||||.+++.+.
T Consensus       103 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  145 (243)
T 3bkw_A          103 LPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTE  145 (243)
T ss_dssp             CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeC
Confidence            445789999999887654      4788999999999999764

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.34  E-value=2.4e-12  Score=121.80  Aligned_cols=107  Identities=17%  Similarity=0.156  Sum_probs=86.4

Q ss_pred             hhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEE
Q psy7829         116 APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE  195 (511)
Q Consensus       116 ~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  195 (511)
                      .+.+...+++.+.  ..++.+|||+|||+|.++..+++   +..+|+|+|+|+.+++.++++           .++++++
T Consensus        19 ~~~~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~   82 (261)
T 3ege_A           19 DIRIVNAIINLLN--LPKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVMRQQAVVH-----------PQVEWFT   82 (261)
T ss_dssp             CHHHHHHHHHHHC--CCTTCEEEEETCTTSHHHHHHHT---TTCEEEEECSCHHHHHSSCCC-----------TTEEEEC
T ss_pred             cHHHHHHHHHHhC--CCCCCEEEEEcCcccHHHHHHHh---CCCEEEEEeCCHHHHHHHHhc-----------cCCEEEE
Confidence            3456666777775  67889999999999999999987   356899999999998876543           1799999


Q ss_pred             ccCCCCCCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEEc
Q psy7829         196 ADAREGYLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       196 ~d~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~  239 (511)
                      +|+.+...+.++||+|++..+++++      .+++.+.|| ||++++...
T Consensus        83 ~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~  131 (261)
T 3ege_A           83 GYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTF  131 (261)
T ss_dssp             CCTTSCCSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred             CchhhCCCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEc
Confidence            9998755556899999999888654      478999999 997777543

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.34  E-value=5.7e-12  Score=115.11  Aligned_cols=103  Identities=22%  Similarity=0.300  Sum_probs=82.4

Q ss_pred             HHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC
Q psy7829         124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL  203 (511)
Q Consensus       124 ~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  203 (511)
                      .+.+.....++.+|||+|||+|..+..+     ...+++++|+|+.+++.++++.          ++++++++|+.+...
T Consensus        27 ~~~l~~~~~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~----------~~~~~~~~d~~~~~~   91 (211)
T 2gs9_A           27 ERALKGLLPPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA----------PEATWVRAWGEALPF   91 (211)
T ss_dssp             HHHHHTTCCCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC----------TTSEEECCCTTSCCS
T ss_pred             HHHHHHhcCCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC----------CCcEEEEcccccCCC
Confidence            3344434458889999999999998876     1237999999999999999875          268999999887554


Q ss_pred             CCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEEccC
Q psy7829         204 PEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       204 ~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~~~  241 (511)
                      +.++||+|++..+++++      .+++.+.|||||.+++.+...
T Consensus        92 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  135 (211)
T 2gs9_A           92 PGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEA  135 (211)
T ss_dssp             CSSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             CCCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            55789999999888765      378899999999999976543

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.34  E-value=7.2e-12  Score=131.53  Aligned_cols=117  Identities=12%  Similarity=0.145  Sum_probs=91.6

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCC-CcCCCCCeEEEEccC
Q psy7829         120 IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK-DLLDSGRVRIVEADA  198 (511)
Q Consensus       120 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-~~~~~~~v~~~~~d~  198 (511)
                      ...+++.+.  ..++.+|||+|||+|.++..+++..++..+|+|+|+|+.+++.|++++..... ...+..+++|+++|+
T Consensus       710 le~LLelL~--~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa  787 (950)
T 3htx_A          710 VEYALKHIR--ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSI  787 (950)
T ss_dssp             HHHHHHHHH--HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCT
T ss_pred             HHHHHHHhc--ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECch
Confidence            444555555  45789999999999999999999864557899999999999999997653210 001345899999999


Q ss_pred             CCCCCCCCCccEEEecCCCCchH--------HHHHhhcccCcEEEEEEc
Q psy7829         199 REGYLPEAPYDVIYYGGCVSEVP--------SRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       199 ~~~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~l~~~~~  239 (511)
                      .+.....++||+|++..+++++.        +++.++|||| .+++.+.
T Consensus       788 ~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTP  835 (950)
T 3htx_A          788 LEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTP  835 (950)
T ss_dssp             TSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred             HhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEec
Confidence            87666668899999999987764        5679999999 7777654

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.34  E-value=7.2e-12  Score=119.07  Aligned_cols=108  Identities=21%  Similarity=0.284  Sum_probs=86.5

Q ss_pred             HHHHHhhcC-CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC
Q psy7829         123 AAENLKLHL-VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG  201 (511)
Q Consensus       123 ~~~~l~~~~-~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  201 (511)
                      +.+.+...+ .++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|+++.          .++.+..+|+...
T Consensus        74 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~----------~~~~~~~~d~~~~  142 (269)
T 1p91_A           74 IVAQLRERLDDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY----------PQVTFCVASSHRL  142 (269)
T ss_dssp             HHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC----------TTSEEEECCTTSC
T ss_pred             HHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhC----------CCcEEEEcchhhC
Confidence            344443333 578899999999999999999986 5678999999999999998863          2588999998765


Q ss_pred             CCCCCCccEEEecCCCCchHHHHHhhcccCcEEEEEEccCC
Q psy7829         202 YLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMD  242 (511)
Q Consensus       202 ~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~l~~~~~~~~  242 (511)
                      ....++||+|++..+. ...+++.++|||||.+++......
T Consensus       143 ~~~~~~fD~v~~~~~~-~~l~~~~~~L~pgG~l~~~~~~~~  182 (269)
T 1p91_A          143 PFSDTSMDAIIRIYAP-CKAEELARVVKPGGWVITATPGPR  182 (269)
T ss_dssp             SBCTTCEEEEEEESCC-CCHHHHHHHEEEEEEEEEEEECTT
T ss_pred             CCCCCceeEEEEeCCh-hhHHHHHHhcCCCcEEEEEEcCHH
Confidence            4455789999987664 456899999999999999765443

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.33  E-value=1.6e-12  Score=122.17  Aligned_cols=101  Identities=20%  Similarity=0.197  Sum_probs=79.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHH--hCCCceEEEEeCCHHHHHHHHHHHhcc---CCCcCCCCC-----------------
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHM--VGPTGKVIGVEHIPELIEASLRNISKG---NKDLLDSGR-----------------  190 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~--~~~~~~v~~iD~~~~~~~~a~~~~~~~---~~~~~~~~~-----------------  190 (511)
                      ++.+|||+|||+|.++..+++.  . +..+|+|+|+|+.+++.|++++...   +.    ..+                 
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~-~~~~v~gvDis~~~l~~A~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  125 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRR-SLRQVIASDVDPAPLELAAKNLALLSPAGL----TARELERREQSERFGKPSYL  125 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGG-GEEEEEEEESCHHHHHHHHHHHHTTSHHHH----HHHHHHHHHHHHHHCCHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhcc-CCCeEEEEECCHHHHHHHHHHHHHhhhccc----cccchhhhhhhhhcccccch
Confidence            5679999999999999999987  4 4568999999999999999988763   20    011                 


Q ss_pred             --------eE-------------EEEccCCCCCC-----CCCCccEEEecCCCC---------------chHHHHHhhcc
Q psy7829         191 --------VR-------------IVEADAREGYL-----PEAPYDVIYYGGCVS---------------EVPSRVLNQLK  229 (511)
Q Consensus       191 --------v~-------------~~~~d~~~~~~-----~~~~fD~I~~~~~~~---------------~~~~~~~~~Lk  229 (511)
                              ++             ++++|+.+...     ...+||+|+++.++.               .+.+++.+.||
T Consensus       126 ~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lk  205 (250)
T 1o9g_A          126 EAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALP  205 (250)
T ss_dssp             HHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSC
T ss_pred             hhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcC
Confidence                    56             99999876442     334899999987642               34578899999


Q ss_pred             cCcEEEEEEc
Q psy7829         230 KGGRILAPIG  239 (511)
Q Consensus       230 pgG~l~~~~~  239 (511)
                      |||++++ +.
T Consensus       206 pgG~l~~-~~  214 (250)
T 1o9g_A          206 AHAVIAV-TD  214 (250)
T ss_dssp             TTCEEEE-EE
T ss_pred             CCcEEEE-eC
Confidence            9999998 44

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.33  E-value=6e-12  Score=117.71  Aligned_cols=112  Identities=18%  Similarity=0.140  Sum_probs=89.6

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      ....+.+.+.....++.+|||+|||+|.++..+++..   .+++++|+++.+++.+++++...+      .+++++++|+
T Consensus        23 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~s~~~~~~a~~~~~~~~------~~~~~~~~d~   93 (246)
T 1y8c_A           23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRSQG------LKPRLACQDI   93 (246)
T ss_dssp             HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHHTT------CCCEEECCCG
T ss_pred             HHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCC---CcEEEEECCHHHHHHHHHHHhhcC------CCeEEEeccc
Confidence            4445566665333478899999999999999998873   479999999999999999987743      2799999998


Q ss_pred             CCCCCCCCCccEEEecC-CCCch---------HHHHHhhcccCcEEEEEEcc
Q psy7829         199 REGYLPEAPYDVIYYGG-CVSEV---------PSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       199 ~~~~~~~~~fD~I~~~~-~~~~~---------~~~~~~~LkpgG~l~~~~~~  240 (511)
                      .+...+ ++||+|++.. +++++         ++++.+.|||||.+++.+..
T Consensus        94 ~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  144 (246)
T 1y8c_A           94 SNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS  144 (246)
T ss_dssp             GGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             ccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence            865444 7899999987 77665         26788999999999997653

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.33  E-value=1.1e-11  Score=112.35  Aligned_cols=102  Identities=18%  Similarity=0.244  Sum_probs=82.5

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ++++ +|||+|||+|..+..+++.   ..+|+++|+++.+++.|++++...+      .+++++++|+.....+.++||+
T Consensus        28 ~~~~-~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD~   97 (202)
T 2kw5_A           28 IPQG-KILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKG------VKITTVQSNLADFDIVADAWEG   97 (202)
T ss_dssp             SCSS-EEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHT------CCEEEECCBTTTBSCCTTTCSE
T ss_pred             CCCC-CEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcC------CceEEEEcChhhcCCCcCCccE
Confidence            5567 9999999999999999886   2489999999999999999988753      2799999998865444578999


Q ss_pred             EEecCCCC------chHHHHHhhcccCcEEEEEEccCC
Q psy7829         211 IYYGGCVS------EVPSRVLNQLKKGGRILAPIGPMD  242 (511)
Q Consensus       211 I~~~~~~~------~~~~~~~~~LkpgG~l~~~~~~~~  242 (511)
                      |++.....      .+++++.+.|||||.+++......
T Consensus        98 v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  135 (202)
T 2kw5_A           98 IVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPE  135 (202)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTT
T ss_pred             EEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence            99864322      234788999999999999766443

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.33  E-value=2.6e-12  Score=118.49  Aligned_cols=102  Identities=23%  Similarity=0.150  Sum_probs=79.4

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCC-HHHHHHH---HHHHhccCCCcCCCCCeEEEEccCCCCCCC-C
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHI-PELIEAS---LRNISKGNKDLLDSGRVRIVEADAREGYLP-E  205 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~-~~~~~~a---~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~  205 (511)
                      .+++.+|||||||+|.++..+++.. +..+|+|+|+| +.+++.|   ++++...     +.+++.++++|+...+.. .
T Consensus        22 ~~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GvD~s~~~ml~~A~~A~~~~~~~-----~~~~v~~~~~d~~~l~~~~~   95 (225)
T 3p2e_A           22 GQFDRVHIDLGTGDGRNIYKLAIND-QNTFYIGIDPVKENLFDISKKIIKKPSKG-----GLSNVVFVIAAAESLPFELK   95 (225)
T ss_dssp             TTCSEEEEEETCTTSHHHHHHHHTC-TTEEEEEECSCCGGGHHHHHHHTSCGGGT-----CCSSEEEECCBTTBCCGGGT
T ss_pred             CCCCCEEEEEeccCcHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHc-----CCCCeEEEEcCHHHhhhhcc
Confidence            4688899999999999999999764 67899999999 7777766   7766654     356899999999865321 2


Q ss_pred             CCccEEEecCCCC-----------chHHHHHhhcccCcEEEEEE
Q psy7829         206 APYDVIYYGGCVS-----------EVPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       206 ~~fD~I~~~~~~~-----------~~~~~~~~~LkpgG~l~~~~  238 (511)
                      +.+|.|+++.+..           .+++++.++|||||++++.+
T Consensus        96 d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~  139 (225)
T 3p2e_A           96 NIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT  139 (225)
T ss_dssp             TCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence            5677777765542           24578999999999999944

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.32  E-value=2e-12  Score=130.55  Aligned_cols=103  Identities=21%  Similarity=0.232  Sum_probs=86.8

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCcc
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYD  209 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD  209 (511)
                      ..++.+|||+|||+|..+..++..++..++|+++|+++.+++.+++|++++|     ..++.++++|+..... ..++||
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g-----~~nv~v~~~Da~~l~~~~~~~FD  177 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWG-----VSNAIVTNHAPAELVPHFSGFFD  177 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHT-----CSSEEEECCCHHHHHHHHTTCEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEeCCHHHhhhhccccCC
Confidence            6789999999999999999999988667899999999999999999999875     5689999999864321 237899


Q ss_pred             EEEecCCCC----------------------------chHHHHHhhcccCcEEEEEE
Q psy7829         210 VIYYGGCVS----------------------------EVPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       210 ~I~~~~~~~----------------------------~~~~~~~~~LkpgG~l~~~~  238 (511)
                      +|+++++|.                            .++..+.+.|||||+|++++
T Consensus       178 ~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT  234 (456)
T 3m4x_A          178 RIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYST  234 (456)
T ss_dssp             EEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            999998862                            23467788999999999864

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.31  E-value=3.7e-12  Score=119.82  Aligned_cols=107  Identities=28%  Similarity=0.391  Sum_probs=86.0

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829         121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE  200 (511)
Q Consensus       121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  200 (511)
                      ..+++.+...+.++.+|||+|||+|.++..+++.. +  +|+++|+++.+++.|++++..++     .. +++.++|+..
T Consensus       108 ~~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~g-~--~v~gvDi~~~~v~~a~~n~~~~~-----~~-v~~~~~d~~~  178 (254)
T 2nxc_A          108 RLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLG-G--KALGVDIDPMVLPQAEANAKRNG-----VR-PRFLEGSLEA  178 (254)
T ss_dssp             HHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTT-C--EEEEEESCGGGHHHHHHHHHHTT-----CC-CEEEESCHHH
T ss_pred             HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhC-C--eEEEEECCHHHHHHHHHHHHHcC-----Cc-EEEEECChhh
Confidence            34455555446789999999999999999988863 4  89999999999999999998864     23 8999999865


Q ss_pred             CCCCCCCccEEEecCCCCc---hHHHHHhhcccCcEEEEE
Q psy7829         201 GYLPEAPYDVIYYGGCVSE---VPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       201 ~~~~~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~l~~~  237 (511)
                      .. +.++||+|+++...+.   +...+.+.|||||++++.
T Consensus       179 ~~-~~~~fD~Vv~n~~~~~~~~~l~~~~~~LkpgG~lils  217 (254)
T 2nxc_A          179 AL-PFGPFDLLVANLYAELHAALAPRYREALVPGGRALLT  217 (254)
T ss_dssp             HG-GGCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cC-cCCCCCEEEECCcHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            33 2468999999865543   447889999999999985

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.31  E-value=5.5e-13  Score=124.64  Aligned_cols=109  Identities=16%  Similarity=0.054  Sum_probs=86.7

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCC
Q psy7829         120 IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAR  199 (511)
Q Consensus       120 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  199 (511)
                      ...+...+.. ..++.+|||+|||+|.++..+++..   .+|+++|+|+.+++.|++++..++    ..++++++++|+.
T Consensus        66 ~~~l~~~~~~-~~~~~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~~  137 (241)
T 3gdh_A           66 AEHIAGRVSQ-SFKCDVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEVYG----IADKIEFICGDFL  137 (241)
T ss_dssp             HHHHHHHHHH-HSCCSEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT----CGGGEEEEESCHH
T ss_pred             HHHHHHHhhh-ccCCCEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcC----CCcCeEEEECChH
Confidence            4444444431 3478999999999999999999863   579999999999999999998864    2258999999987


Q ss_pred             CCCCCCCCccEEEecCCCCchH------HHHHhhcccCcEEEEE
Q psy7829         200 EGYLPEAPYDVIYYGGCVSEVP------SRVLNQLKKGGRILAP  237 (511)
Q Consensus       200 ~~~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~l~~~  237 (511)
                      +.. ..++||+|+++.++++..      .++.+.|+|||.+++.
T Consensus       138 ~~~-~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          138 LLA-SFLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFR  180 (241)
T ss_dssp             HHG-GGCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred             Hhc-ccCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHH
Confidence            644 347899999999887653      3478899999997764

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.30  E-value=4.1e-12  Score=118.62  Aligned_cols=95  Identities=22%  Similarity=0.228  Sum_probs=77.4

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC--CCCCCC
Q psy7829         130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG--YLPEAP  207 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~  207 (511)
                      .++++.+|||||||+|.++..+++..   .+|+|+|+|+.+++.++++             ++++.+|+.+.  ..+.++
T Consensus        38 ~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~-------------~~~~~~d~~~~~~~~~~~~  101 (240)
T 3dli_A           38 YFKGCRRVLDIGCGRGEFLELCKEEG---IESIGVDINEDMIKFCEGK-------------FNVVKSDAIEYLKSLPDKY  101 (240)
T ss_dssp             GTTTCSCEEEETCTTTHHHHHHHHHT---CCEEEECSCHHHHHHHHTT-------------SEEECSCHHHHHHTSCTTC
T ss_pred             hhcCCCeEEEEeCCCCHHHHHHHhCC---CcEEEEECCHHHHHHHHhh-------------cceeeccHHHHhhhcCCCC
Confidence            35678999999999999999998873   3699999999999988754             57888887652  224588


Q ss_pred             ccEEEecCCCCch--------HHHHHhhcccCcEEEEEEcc
Q psy7829         208 YDVIYYGGCVSEV--------PSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       208 fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~~~~  240 (511)
                      ||+|++..+++++        .+++.+.|||||.+++.+..
T Consensus       102 fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  142 (240)
T 3dli_A          102 LDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPN  142 (240)
T ss_dssp             BSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred             eeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            9999999887654        36889999999999997654

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.29  E-value=8.4e-12  Score=120.57  Aligned_cols=114  Identities=19%  Similarity=0.289  Sum_probs=86.3

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      ....+++.+.   .++.+|||+|||+|.++..+++..   .+|+++|+|+.+++.|++++...+..  ...+++++++|+
T Consensus        71 ~~~~~~~~~~---~~~~~vLDlGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~--~~~~v~~~~~d~  142 (299)
T 3g2m_A           71 EAREFATRTG---PVSGPVLELAAGMGRLTFPFLDLG---WEVTALELSTSVLAAFRKRLAEAPAD--VRDRCTLVQGDM  142 (299)
T ss_dssp             HHHHHHHHHC---CCCSCEEEETCTTTTTHHHHHTTT---CCEEEEESCHHHHHHHHHHHHTSCHH--HHTTEEEEECBT
T ss_pred             HHHHHHHhhC---CCCCcEEEEeccCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHhhcccc--cccceEEEeCch
Confidence            4445555553   344599999999999999999873   46999999999999999998874200  015799999999


Q ss_pred             CCCCCCCCCccEEEec-CCCC--------chHHHHHhhcccCcEEEEEEccC
Q psy7829         199 REGYLPEAPYDVIYYG-GCVS--------EVPSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       199 ~~~~~~~~~fD~I~~~-~~~~--------~~~~~~~~~LkpgG~l~~~~~~~  241 (511)
                      .+... .++||+|++. ..++        .+++++.+.|||||.|++.+...
T Consensus       143 ~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  193 (299)
T 3g2m_A          143 SAFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMS  193 (299)
T ss_dssp             TBCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             hcCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence            87544 5889998864 3332        23478999999999999976543

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.29  E-value=5.8e-12  Score=110.82  Aligned_cols=99  Identities=16%  Similarity=0.234  Sum_probs=81.9

Q ss_pred             HHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC
Q psy7829         123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY  202 (511)
Q Consensus       123 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  202 (511)
                      +++.+.  +.++.+|||+|||+|.++..+++.. .  +++++|+++.+++.++++.          ++++++.+|  . .
T Consensus         9 ~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~----------~~v~~~~~d--~-~   70 (170)
T 3i9f_A            9 YLPNIF--EGKKGVIVDYGCGNGFYCKYLLEFA-T--KLYCIDINVIALKEVKEKF----------DSVITLSDP--K-E   70 (170)
T ss_dssp             THHHHH--SSCCEEEEEETCTTCTTHHHHHTTE-E--EEEEECSCHHHHHHHHHHC----------TTSEEESSG--G-G
T ss_pred             HHHhcC--cCCCCeEEEECCCCCHHHHHHHhhc-C--eEEEEeCCHHHHHHHHHhC----------CCcEEEeCC--C-C
Confidence            344554  6788899999999999999999886 2  7999999999999999871          268999999  2 2


Q ss_pred             CCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEEc
Q psy7829         203 LPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       203 ~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~  239 (511)
                      ...++||+|++..+++++      .+++.+.|||||.+++...
T Consensus        71 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  113 (170)
T 3i9f_A           71 IPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDW  113 (170)
T ss_dssp             SCTTCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEc
Confidence            245789999999988765      4789999999999998643

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.29  E-value=1.9e-11  Score=114.88  Aligned_cols=98  Identities=22%  Similarity=0.323  Sum_probs=79.6

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEE
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVI  211 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I  211 (511)
                      +++.+|||+|||+|..+..+++.   ..+|+++|+|+.+++.|++++...+      .+++++++|+.+... .++||+|
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~------~~v~~~~~d~~~~~~-~~~fD~v  109 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERN------LKIEFLQGDVLEIAF-KNEFDAV  109 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT------CCCEEEESCGGGCCC-CSCEEEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcC------CceEEEECChhhccc-CCCccEE
Confidence            56789999999999999999986   3479999999999999999987743      279999999986443 3689999


Q ss_pred             EecCCC-C--------chHHHHHhhcccCcEEEEEEc
Q psy7829         212 YYGGCV-S--------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       212 ~~~~~~-~--------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      ++.... .        .+++++.+.|||||.+++.+.
T Consensus       110 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~  146 (252)
T 1wzn_A          110 TMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP  146 (252)
T ss_dssp             EECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence            975322 1        234778999999999998654

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.29  E-value=4.8e-12  Score=121.89  Aligned_cols=115  Identities=15%  Similarity=0.133  Sum_probs=87.1

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      ....+.+.+.  ..++.+|||+|||+|..+..+++.. .  +|+|+|+|+.+++.|+++....+.. ....++.+..+|+
T Consensus        45 ~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~-~--~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~d~  118 (293)
T 3thr_A           45 YKAWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEEG-F--SVTSVDASDKMLKYALKERWNRRKE-PAFDKWVIEEANW  118 (293)
T ss_dssp             HHHHHHHHHH--HTTCCEEEETTCTTSHHHHHHHHTT-C--EEEEEESCHHHHHHHHHHHHHTTTS-HHHHTCEEEECCG
T ss_pred             HHHHHHHHhc--ccCCCEEEEecCCCCHHHHHHHHCC-C--eEEEEECCHHHHHHHHHhhhhcccc-cccceeeEeecCh
Confidence            4455556665  4578899999999999999999873 3  8999999999999999887442210 0124688999998


Q ss_pred             CCCC---CCCCCccEEEec-CCCCc-------------hHHHHHhhcccCcEEEEEEc
Q psy7829         199 REGY---LPEAPYDVIYYG-GCVSE-------------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       199 ~~~~---~~~~~fD~I~~~-~~~~~-------------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      ....   ...++||+|++. .++++             +++++.+.|||||++++.+.
T Consensus       119 ~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  176 (293)
T 3thr_A          119 LTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  176 (293)
T ss_dssp             GGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            7533   345789999997 55533             34689999999999998764

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.29  E-value=1.1e-11  Score=116.96  Aligned_cols=101  Identities=25%  Similarity=0.193  Sum_probs=86.0

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCcc
Q psy7829         130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYD  209 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  209 (511)
                      ..++|.+|||+|||+|.+++.+|+..  ..+|+++|+++.+++.+++|++.++    ..++++++++|+.+.. ..+.||
T Consensus       122 ~~~~g~~VlD~~aG~G~~~i~~a~~g--~~~V~avD~np~a~~~~~~N~~~N~----v~~~v~~~~~D~~~~~-~~~~~D  194 (278)
T 3k6r_A          122 VAKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNK----VEDRMSAYNMDNRDFP-GENIAD  194 (278)
T ss_dssp             HCCTTCEEEETTCTTTTTTHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTT----CTTTEEEECSCTTTCC-CCSCEE
T ss_pred             hcCCCCEEEEecCcCcHHHHHHHHhc--CCeEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEeCcHHHhc-cccCCC
Confidence            36789999999999999999999874  4689999999999999999999986    4567999999998744 357899


Q ss_pred             EEEecCCCC--chHHHHHhhcccCcEEEEE
Q psy7829         210 VIYYGGCVS--EVPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       210 ~I~~~~~~~--~~~~~~~~~LkpgG~l~~~  237 (511)
                      .|+++.+..  .++..+.+.|||||.+.+.
T Consensus       195 ~Vi~~~p~~~~~~l~~a~~~lk~gG~ih~~  224 (278)
T 3k6r_A          195 RILMGYVVRTHEFIPKALSIAKDGAIIHYH  224 (278)
T ss_dssp             EEEECCCSSGGGGHHHHHHHEEEEEEEEEE
T ss_pred             EEEECCCCcHHHHHHHHHHHcCCCCEEEEE
Confidence            999987653  4567889999999998763

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.29  E-value=1.1e-11  Score=113.56  Aligned_cols=134  Identities=16%  Similarity=0.248  Sum_probs=91.0

Q ss_pred             HHHHHHHHH-hhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-cccccccccccccc--
Q psy7829         358 RSIAHILDL-CYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNHIDLIANETIEI--  433 (511)
Q Consensus       358 ~~~~~~~~~-~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~~--  433 (511)
                      +..+.++.- ..+.++||++|||+|||+|+++..+|+.+||+|+|+|+|+++++++.+.++.. ..|+..+.++....  
T Consensus        61 klaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~  140 (233)
T 4df3_A           61 KLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEK  140 (233)
T ss_dssp             HHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGG
T ss_pred             HHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccc
Confidence            455555432 23678999999999999999999999999999999999999999998887765 46777776653221  


Q ss_pred             ---ccccchhhhhcccCCcEEEEEcCC--ccHHHHHHHHHhCCCcEEEEh------------HHHHHHHHHHHHhcCCCc
Q psy7829         434 ---IPHILDLCYLNLHRGAKVLEIGSG--SGYLATLMAHLVGPTGHVTGL------------EHMMDIAIESIANISTNH  496 (511)
Q Consensus       434 ---l~~~~d~i~~~l~~~~~vLD~~~g--~g~~~~~l~~~l~~~g~v~~~------------~~ml~~a~~~~~~~~~~~  496 (511)
                         ....+|.++.         |+..-  .-.....+.+.|||+|+++..            ....+...+.+++.|+.-
T Consensus       141 ~~~~~~~vDvVf~---------d~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l  211 (233)
T 4df3_A          141 YRHLVEGVDGLYA---------DVAQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEI  211 (233)
T ss_dssp             GTTTCCCEEEEEE---------CCCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCE
T ss_pred             cccccceEEEEEE---------eccCChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEE
Confidence               1222333332         22221  112345567789999998764            234455666677777744


Q ss_pred             eEEE
Q psy7829         497 IDLI  500 (511)
Q Consensus       497 i~~i  500 (511)
                      ++.+
T Consensus       212 ~e~i  215 (233)
T 4df3_A          212 KDVV  215 (233)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.29  E-value=2.9e-11  Score=114.88  Aligned_cols=113  Identities=18%  Similarity=0.160  Sum_probs=85.9

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCc---cHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEE
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGS---GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE  195 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~---G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  195 (511)
                      +...+++.+.. .....+|||||||+   |.++..+++.. +..+|+++|+|+.|++.|++++..       .+++++++
T Consensus        64 ~~~~~~~~l~~-~~~~~~vLDlGcG~pt~G~~~~~~~~~~-p~~~v~~vD~sp~~l~~Ar~~~~~-------~~~v~~~~  134 (274)
T 2qe6_A           64 VLVRGVRFLAG-EAGISQFLDLGSGLPTVQNTHEVAQSVN-PDARVVYVDIDPMVLTHGRALLAK-------DPNTAVFT  134 (274)
T ss_dssp             HHHHHHHHHHT-TTCCCEEEEETCCSCCSSCHHHHHHHHC-TTCEEEEEESSHHHHHHHHHHHTT-------CTTEEEEE
T ss_pred             HHHHHHHHHhh-ccCCCEEEEECCCCCCCChHHHHHHHhC-CCCEEEEEECChHHHHHHHHhcCC-------CCCeEEEE
Confidence            34444555431 12347999999999   98887766664 778999999999999999998854       34799999


Q ss_pred             ccCCCCC-----------CCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEEEcc
Q psy7829         196 ADAREGY-----------LPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       196 ~d~~~~~-----------~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~~~~  240 (511)
                      +|+.+..           .+..+||+|++...++++        ++++.+.|||||+|++....
T Consensus       135 ~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~  198 (274)
T 2qe6_A          135 ADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLV  198 (274)
T ss_dssp             CCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred             eeCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence            9987420           122479999999887654        36889999999999997654

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.29  E-value=9.4e-12  Score=122.16  Aligned_cols=98  Identities=23%  Similarity=0.311  Sum_probs=80.0

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ..++.+|||+|||+|.++..+++..  ..+|+|+|+++ +++.|+++++.++    ..++++++.+|+.+...+.++||+
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~g--~~~v~gvD~s~-~~~~a~~~~~~~~----~~~~i~~~~~d~~~~~~~~~~~D~  134 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKAG--AKKVLGVDQSE-ILYQAMDIIRLNK----LEDTITLIKGKIEEVHLPVEKVDV  134 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEESST-HHHHHHHHHHHTT----CTTTEEEEESCTTTSCCSCSCEEE
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHcC--CCEEEEEChHH-HHHHHHHHHHHcC----CCCcEEEEEeeHHHhcCCCCcEEE
Confidence            5678999999999999999999873  45899999996 9999999998865    346899999999875444578999


Q ss_pred             EEecCC---CC------chHHHHHhhcccCcEEE
Q psy7829         211 IYYGGC---VS------EVPSRVLNQLKKGGRIL  235 (511)
Q Consensus       211 I~~~~~---~~------~~~~~~~~~LkpgG~l~  235 (511)
                      |+++..   +.      .++.++.+.|||||.++
T Consensus       135 Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          135 IISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             EEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            998762   21      23466789999999987

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.29  E-value=7.4e-12  Score=123.25  Aligned_cols=109  Identities=17%  Similarity=0.231  Sum_probs=88.2

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCC
Q psy7829         120 IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAR  199 (511)
Q Consensus       120 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  199 (511)
                      ...+++.+.  ..++.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.+++++..++      .+++++.+|+.
T Consensus       185 ~~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~------~~~~~~~~d~~  255 (343)
T 2pjd_A          185 SQLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHS-PKIRLTLCDVSAPAVEASRATLAANG------VEGEVFASNVF  255 (343)
T ss_dssp             HHHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHC-TTCBCEEEESBHHHHHHHHHHHHHTT------CCCEEEECSTT
T ss_pred             HHHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhC------CCCEEEEcccc
Confidence            344555553  3457799999999999999999985 67799999999999999999998754      13678899987


Q ss_pred             CCCCCCCCccEEEecCCCCc-----------hHHHHHhhcccCcEEEEEEc
Q psy7829         200 EGYLPEAPYDVIYYGGCVSE-----------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       200 ~~~~~~~~fD~I~~~~~~~~-----------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      ...  .++||+|+++.+++.           +.+++.+.|||||.+++...
T Consensus       256 ~~~--~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  304 (343)
T 2pjd_A          256 SEV--KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (343)
T ss_dssp             TTC--CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             ccc--cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence            643  478999999998864           24778899999999999654

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.29  E-value=2.9e-12  Score=121.32  Aligned_cols=106  Identities=16%  Similarity=0.169  Sum_probs=78.2

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCC-----------------------
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD-----------------------  187 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~-----------------------  187 (511)
                      ..++.+|||||||+|.++..++...  ..+|+|+|+|+.|++.|+++++..... +.                       
T Consensus        53 ~~~g~~vLDiGCG~G~~~~~~~~~~--~~~v~g~D~s~~~l~~a~~~~~~~~~~-~d~s~~~~~~~~~~~~~~~~~~~~~  129 (263)
T 2a14_A           53 GLQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGA-YDWTPAVKFACELEGNSGRWEEKEE  129 (263)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTC-CCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             CCCCceEEEeCCCccHHHHHHHHhh--hcceeeccccHHHHHHHHHHHhcCCCc-ccchHHHHHHHhcCCCCcchhhHHH
Confidence            4578899999999998877666542  247999999999999999887653100 00                       


Q ss_pred             --CCCeE-EEEccCCCCCC----CCCCccEEEecCCCCch----------HHHHHhhcccCcEEEEEEc
Q psy7829         188 --SGRVR-IVEADAREGYL----PEAPYDVIYYGGCVSEV----------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       188 --~~~v~-~~~~d~~~~~~----~~~~fD~I~~~~~~~~~----------~~~~~~~LkpgG~l~~~~~  239 (511)
                        ..++. ++++|+.+..+    ..++||+|++..+++++          ++++.++|||||.|++...
T Consensus       130 ~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~  198 (263)
T 2a14_A          130 KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT  198 (263)
T ss_dssp             HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             HHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence              01244 89999886321    24689999999877653          3678899999999999743

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.29  E-value=1.9e-11  Score=121.31  Aligned_cols=282  Identities=12%  Similarity=0.116  Sum_probs=150.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY  212 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~  212 (511)
                      .+.+||.++.+.|.++..++.. +    ++.+.-|--.....+.|+..++.   ...++++...  .+.  ....||+|+
T Consensus        38 ~~~~~~~~~d~~gal~~~~~~~-~----~~~~~ds~~~~~~~~~n~~~~~~---~~~~~~~~~~--~~~--~~~~~~~v~  105 (375)
T 4dcm_A           38 IRGPVLILNDAFGALSCALAEH-K----PYSIGDSYISELATRENLRLNGI---DESSVKFLDS--TAD--YPQQPGVVL  105 (375)
T ss_dssp             CCSCEEEECCSSSHHHHHTGGG-C----CEEEESCHHHHHHHHHHHHHTTC---CGGGSEEEET--TSC--CCSSCSEEE
T ss_pred             CCCCEEEECCCCCHHHHhhccC-C----ceEEEhHHHHHHHHHHHHHHcCC---CccceEeccc--ccc--cccCCCEEE
Confidence            4568999999999999988754 2    45554466666677888888762   2334666533  222  236799998


Q ss_pred             ecCCCC-----chHHHHHhhcccCcEEEEEEccCCCcce-EEEEEEecCCeEEEEeecceEEEecccccccccccccccC
Q psy7829         213 YGGCVS-----EVPSRVLNQLKKGGRILAPIGPMDDFQK-LTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMD  286 (511)
Q Consensus       213 ~~~~~~-----~~~~~~~~~LkpgG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  286 (511)
                      ...+-.     ..+..+...|+||+.+++.-........ ...+.+. .+.. .        ..+.. .+.... +....
T Consensus       106 ~~lpk~~~~l~~~L~~l~~~l~~~~~i~~~g~~~~~~~~~~~~l~~~-~~~~-~--------~~~a~-~~~~~~-~~~~~  173 (375)
T 4dcm_A          106 IKVPKTLALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKV-LGPT-T--------TTLAW-KKARLI-NCTFN  173 (375)
T ss_dssp             EECCSCHHHHHHHHHHHHTTCCTTSEEEEEEEGGGCCHHHHHHHHHH-TCCE-E--------ECCCB-TTEEEE-EECCC
T ss_pred             EEcCCCHHHHHHHHHHHHhhCCCCCEEEEEecccchHHHHHHHHHhh-cCcc-c--------hhhhh-ceeEEE-EEeCC
Confidence            876643     2347788899999999663221111000 0000000 0000 0        00000 000000 00000


Q ss_pred             ccccccccccccchhhHHHHhhhhhccCCCcccCccccCCCCCCCCCceeeeccccccccCCCCCCCCCCHHHHHHHHHH
Q psy7829         287 PVDENLFTLMDKDSDELFSERVWELKQDPLYTTEKWIPQPPGYTTPGEITTRDKYGRLVHGSAPDNGPSSERSIAHILDL  366 (511)
Q Consensus       287 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (511)
                        .....                   ..+  ....|......      .......+.+...       ........++..
T Consensus       174 --~~~~~-------------------~~~--~~~~~~~~~~~------~~~~~~pg~Fs~~-------~~d~~~~~ll~~  217 (375)
T 4dcm_A          174 --EPQLA-------------------DAP--QTVSWKLEGTD------WTIHNHANVFSRT-------GLDIGARFFMQH  217 (375)
T ss_dssp             --CCCCC-------------------CCC--SCEEEEETTTT------EEEEECTTCTTCS-------SCCHHHHHHHHT
T ss_pred             --CCCCC-------------------CCC--CceEEEecCCc------eEEEeCCCcccCC-------cccHHHHHHHHh
Confidence              00000                   000  00011111000      0111111111111       112333345554


Q ss_pred             hhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc------cccccccccccccc-ccch
Q psy7829         367 CYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN------HIDLIANETIEIIP-HILD  439 (511)
Q Consensus       367 ~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~------~v~~i~~d~~~~l~-~~~d  439 (511)
                        +...++.+|||+|||+|.+++.+++.. |..+|+++|+++.+++.+++|+..+      +++++.+|..+.++ ..+|
T Consensus       218 --l~~~~~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~fD  294 (375)
T 4dcm_A          218 --LPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFN  294 (375)
T ss_dssp             --CCCSCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTCEE
T ss_pred             --CcccCCCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCCee
Confidence              666778999999999999999999886 6689999999999998888776543      36667777665443 3577


Q ss_pred             hhhhcccCCcEEEEEcCCc-cHHHHHHHHHhCCCcEEEEh
Q psy7829         440 LCYLNLHRGAKVLEIGSGS-GYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       440 ~i~~~l~~~~~vLD~~~g~-g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .++.+..-.. ..++.... -.+...+.+.|+|+|.++.+
T Consensus       295 ~Ii~nppfh~-~~~~~~~~~~~~l~~~~~~LkpgG~l~iv  333 (375)
T 4dcm_A          295 AVLCNPPFHQ-QHALTDNVAWEMFHHARRCLKINGELYIV  333 (375)
T ss_dssp             EEEECCCC--------CCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEECCCccc-CcccCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            7776543221 01111111 12456777889999998886

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.28  E-value=1.6e-11  Score=108.06  Aligned_cols=106  Identities=17%  Similarity=0.158  Sum_probs=80.5

Q ss_pred             cchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEE
Q psy7829         114 MNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI  193 (511)
Q Consensus       114 ~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~  193 (511)
                      +++|.. ..+++.+.....++.+|||+|||+|.++..+++..    +|+|+|+|+.+++.      .        .++++
T Consensus         5 ~P~~~~-~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~------~--------~~~~~   65 (170)
T 3q87_B            5 EPGEDT-YTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES------H--------RGGNL   65 (170)
T ss_dssp             CCCHHH-HHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT------C--------SSSCE
T ss_pred             CcCccH-HHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc------c--------cCCeE
Confidence            444433 33455554222567899999999999999998874    79999999999987      1        16889


Q ss_pred             EEccCCCCCCCCCCccEEEecCCCCc---------------hHHHHHhhcccCcEEEEEEcc
Q psy7829         194 VEADAREGYLPEAPYDVIYYGGCVSE---------------VPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       194 ~~~d~~~~~~~~~~fD~I~~~~~~~~---------------~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      +++|+.+... .++||+|+++.++.+               +..++.+.| |||.+++....
T Consensus        66 ~~~d~~~~~~-~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~  125 (170)
T 3q87_B           66 VRADLLCSIN-QESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIE  125 (170)
T ss_dssp             EECSTTTTBC-GGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEG
T ss_pred             EECChhhhcc-cCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEec
Confidence            9999987443 378999999988752               346788888 99999987643

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.28  E-value=1e-11  Score=122.38  Aligned_cols=99  Identities=25%  Similarity=0.270  Sum_probs=80.8

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      +.++.+|||+|||+|.++..+++.  +..+|+|+|+| ++++.|+++++.++    ..++++++++|+.+...+.++||+
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~--g~~~v~gvD~s-~~l~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~fD~  136 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECS-SISDYAVKIVKANK----LDHVVTIIKGKVEEVELPVEKVDI  136 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHT--TCSEEEEEECS-THHHHHHHHHHHTT----CTTTEEEEESCTTTCCCSSSCEEE
T ss_pred             cCCCCEEEEEeccchHHHHHHHHC--CCCEEEEECcH-HHHHHHHHHHHHcC----CCCcEEEEECcHHHccCCCCceEE
Confidence            457899999999999999999987  35689999999 59999999998875    345699999999876545588999


Q ss_pred             EEecCCCC---------chHHHHHhhcccCcEEEE
Q psy7829         211 IYYGGCVS---------EVPSRVLNQLKKGGRILA  236 (511)
Q Consensus       211 I~~~~~~~---------~~~~~~~~~LkpgG~l~~  236 (511)
                      |+++.+..         .+...+.++|||||.++.
T Consensus       137 Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          137 IISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             EEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             EEEccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence            99975421         233677899999999983

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.28  E-value=9e-12  Score=116.61  Aligned_cols=99  Identities=18%  Similarity=0.218  Sum_probs=80.5

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCC-----
Q psy7829         130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLP-----  204 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-----  204 (511)
                      .+.++.+|||+|||+|..+..+++.. +  +|+++|+|+.+++.+++++.        ..+++++++|+.+....     
T Consensus        53 ~~~~~~~vLD~GcG~G~~~~~la~~~-~--~v~gvD~s~~~~~~a~~~~~--------~~~~~~~~~d~~~~~~~~~~~~  121 (245)
T 3ggd_A           53 LFNPELPLIDFACGNGTQTKFLSQFF-P--RVIGLDVSKSALEIAAKENT--------AANISYRLLDGLVPEQAAQIHS  121 (245)
T ss_dssp             TSCTTSCEEEETCTTSHHHHHHHHHS-S--CEEEEESCHHHHHHHHHHSC--------CTTEEEEECCTTCHHHHHHHHH
T ss_pred             ccCCCCeEEEEcCCCCHHHHHHHHhC-C--CEEEEECCHHHHHHHHHhCc--------ccCceEEECccccccccccccc
Confidence            46788999999999999999999986 3  69999999999999999863        23799999998753211     


Q ss_pred             CCCccEEEecCCCCchH--------HHHHhhcccCcEEEEEEc
Q psy7829         205 EAPYDVIYYGGCVSEVP--------SRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       205 ~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~l~~~~~  239 (511)
                      ...||+|+++..++++.        +++.+.|||||++++...
T Consensus       122 ~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  164 (245)
T 3ggd_A          122 EIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIEL  164 (245)
T ss_dssp             HHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             ccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            13489999998876543        678999999999877543

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.28  E-value=2.9e-11  Score=120.04  Aligned_cols=99  Identities=16%  Similarity=0.237  Sum_probs=84.2

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC--CCCCCcc
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY--LPEAPYD  209 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD  209 (511)
                      ....+|||||||+|..+..+++.+ |..+++++|+ +.+++.|++++...+    ..++++++.+|+.+..  .+ ++||
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~p-~~~D  250 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAGLS----GSERIHGHGANLLDRDVPFP-TGFD  250 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTTCT----TGGGEEEEECCCCSSSCCCC-CCCS
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHhcC----cccceEEEEccccccCCCCC-CCcC
Confidence            466899999999999999999997 7889999999 999999999988754    2468999999998742  23 6899


Q ss_pred             EEEecCCCCch--------HHHHHhhcccCcEEEEE
Q psy7829         210 VIYYGGCVSEV--------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       210 ~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~  237 (511)
                      +|++...++++        ++++.+.|||||++++.
T Consensus       251 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~  286 (363)
T 3dp7_A          251 AVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIM  286 (363)
T ss_dssp             EEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             EEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            99999888643        47889999999999884

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.28  E-value=3e-11  Score=120.17  Aligned_cols=99  Identities=19%  Similarity=0.256  Sum_probs=84.8

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ..++.+|||+|||+|.++..+++.+ |..+++++|+ +.+++.|++++...+    ..++++++.+|+.+..+  ..||+
T Consensus       200 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~----l~~~v~~~~~d~~~~~p--~~~D~  271 (369)
T 3gwz_A          200 FSGAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGRG----LADRCEILPGDFFETIP--DGADV  271 (369)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTT----CTTTEEEEECCTTTCCC--SSCSE
T ss_pred             CccCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhcC----cCCceEEeccCCCCCCC--CCceE
Confidence            4577899999999999999999996 7889999999 999999999988754    35689999999985433  27999


Q ss_pred             EEecCCCCc--------hHHHHHhhcccCcEEEEE
Q psy7829         211 IYYGGCVSE--------VPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       211 I~~~~~~~~--------~~~~~~~~LkpgG~l~~~  237 (511)
                      |++...+++        +++++.+.|||||++++.
T Consensus       272 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~  306 (369)
T 3gwz_A          272 YLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVI  306 (369)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             EEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            999988854        347789999999999985

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.28  E-value=1.8e-11  Score=113.97  Aligned_cols=103  Identities=16%  Similarity=0.262  Sum_probs=82.1

Q ss_pred             HHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC
Q psy7829         122 DAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG  201 (511)
Q Consensus       122 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  201 (511)
                      .+.+.+.....++.+|||+|||+|.++..+++.. +  +++++|+|+.+++.++++.          ++++++++|+.+.
T Consensus        29 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~--~v~~~D~s~~~~~~a~~~~----------~~~~~~~~d~~~~   95 (239)
T 3bxo_A           29 DIADLVRSRTPEASSLLDVACGTGTHLEHFTKEF-G--DTAGLELSEDMLTHARKRL----------PDATLHQGDMRDF   95 (239)
T ss_dssp             HHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHH-S--EEEEEESCHHHHHHHHHHC----------TTCEEEECCTTTC
T ss_pred             HHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhC-C--cEEEEeCCHHHHHHHHHhC----------CCCEEEECCHHHc
Confidence            3445554445678899999999999999999986 3  7999999999999998874          2589999999864


Q ss_pred             CCCCCCccEEEecC-CCCch---------HHHHHhhcccCcEEEEEE
Q psy7829         202 YLPEAPYDVIYYGG-CVSEV---------PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       202 ~~~~~~fD~I~~~~-~~~~~---------~~~~~~~LkpgG~l~~~~  238 (511)
                      .. .++||+|++.. .++++         ++++.+.|||||.+++..
T Consensus        96 ~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (239)
T 3bxo_A           96 RL-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEP  141 (239)
T ss_dssp             CC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             cc-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            43 57899999543 54433         377899999999999864

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.28  E-value=1.1e-11  Score=119.47  Aligned_cols=105  Identities=13%  Similarity=0.155  Sum_probs=76.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcC-CCCCeEEEEccCCCC--------CC
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLL-DSGRVRIVEADAREG--------YL  203 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-~~~~v~~~~~d~~~~--------~~  203 (511)
                      ++.+|||||||+|..+..+++..  ..+|+|+|+|+.|++.|+++....+.... ..-+++|.+.|+...        ..
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~--~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~  125 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGE--IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF  125 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred             CCCeEEEEecCCcHhHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence            57899999999998666665542  45899999999999999998876421000 001367888887311        12


Q ss_pred             CCCCccEEEecCCCCc---------hHHHHHhhcccCcEEEEEEc
Q psy7829         204 PEAPYDVIYYGGCVSE---------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       204 ~~~~fD~I~~~~~~~~---------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      +.++||+|+|..++++         +++++.++|||||.+++.+.
T Consensus       126 ~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          126 YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            3478999998876643         34789999999999998765

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.28  E-value=2.2e-11  Score=109.39  Aligned_cols=97  Identities=24%  Similarity=0.359  Sum_probs=79.8

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ++++.+|||+|||+|.++..+++.   ..+++++|+++.+++.+++++.          +++++++|+.....+.++||+
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~~----------~~~~~~~d~~~~~~~~~~~D~  110 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDFP----------EARWVVGDLSVDQISETDFDL  110 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHCT----------TSEEEECCTTTSCCCCCCEEE
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhCC----------CCcEEEcccccCCCCCCceeE
Confidence            568899999999999999999987   3479999999999999998742          589999998864444578999


Q ss_pred             EEec-CCCCc--------hHHHHHhhcccCcEEEEEEcc
Q psy7829         211 IYYG-GCVSE--------VPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       211 I~~~-~~~~~--------~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      |+++ ..+++        +++++.+.|+|||.+++....
T Consensus       111 i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~  149 (195)
T 3cgg_A          111 IVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGA  149 (195)
T ss_dssp             EEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             EEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence            9998 44433        347789999999999997654

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.27  E-value=5.9e-12  Score=121.22  Aligned_cols=104  Identities=18%  Similarity=0.120  Sum_probs=75.7

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHh---CCCceE--EEEeCCHHHHHHHHHHHhccCCCcCCCCCeEE--EEccCCCCC--
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMV---GPTGKV--IGVEHIPELIEASLRNISKGNKDLLDSGRVRI--VEADAREGY--  202 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~---~~~~~v--~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~--~~~d~~~~~--  202 (511)
                      .++.+|||||||+|.++..++..+   .+..+|  +++|+|++|++.|++++....    ..+++.+  ..+++....  
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~----~~~~v~~~~~~~~~~~~~~~  126 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTS----NLENVKFAWHKETSSEYQSR  126 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCS----SCTTEEEEEECSCHHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhcc----CCCcceEEEEecchhhhhhh
Confidence            457799999999998776443322   145544  999999999999999986531    2345555  444443211  


Q ss_pred             ----CCCCCccEEEecCCCCchH------HHHHhhcccCcEEEEEEc
Q psy7829         203 ----LPEAPYDVIYYGGCVSEVP------SRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       203 ----~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~l~~~~~  239 (511)
                          ..+++||+|++..+++++.      +++.++|||||++++...
T Consensus       127 ~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~  173 (292)
T 2aot_A          127 MLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVV  173 (292)
T ss_dssp             HHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence                2347899999999998763      789999999999998644

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.27  E-value=2.3e-11  Score=110.13  Aligned_cols=95  Identities=17%  Similarity=0.207  Sum_probs=75.4

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC-------
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGP-TGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY-------  202 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-------  202 (511)
                      ++++.+|||+|||+|.++..+++.+++ .++|+|+|+++..                ..++++++++|+.+..       
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------------~~~~v~~~~~d~~~~~~~~~~~~   83 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------------PIPNVYFIQGEIGKDNMNNIKNI   83 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------------CCTTCEEEECCTTTTSSCCC---
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------------CCCCceEEEccccchhhhhhccc
Confidence            568889999999999999999998742 6899999999831                1346899999987643       


Q ss_pred             ------------------CCCCCccEEEecCCCCc-----------------hHHHHHhhcccCcEEEEEEccC
Q psy7829         203 ------------------LPEAPYDVIYYGGCVSE-----------------VPSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       203 ------------------~~~~~fD~I~~~~~~~~-----------------~~~~~~~~LkpgG~l~~~~~~~  241 (511)
                                        .+.++||+|+++.+++.                 +.+++.+.|||||.+++.+...
T Consensus        84 ~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  157 (201)
T 2plw_A           84 NYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG  157 (201)
T ss_dssp             --------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             cccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC
Confidence                              23468999999877654                 3456889999999999876543

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.27  E-value=2e-11  Score=115.39  Aligned_cols=102  Identities=25%  Similarity=0.305  Sum_probs=79.9

Q ss_pred             HHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC
Q psy7829         124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL  203 (511)
Q Consensus       124 ~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  203 (511)
                      .+.+...+.++.+|||+|||+|.++..+++..   .+|+++|+|+.+++.++++...         +  ++++|+.....
T Consensus        45 ~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~---------~--~~~~d~~~~~~  110 (260)
T 2avn_A           45 GSFLEEYLKNPCRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLEVAREKGVK---------N--VVEAKAEDLPF  110 (260)
T ss_dssp             HHHHHHHCCSCCEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHHTCS---------C--EEECCTTSCCS
T ss_pred             HHHHHHhcCCCCeEEEeCCCcCHHHHHHHHcC---CeEEEEeCCHHHHHHHHhhcCC---------C--EEECcHHHCCC
Confidence            33343334578899999999999999998863   4799999999999999987431         2  78899876554


Q ss_pred             CCCCccEEEecCCCCc-------hHHHHHhhcccCcEEEEEEc
Q psy7829         204 PEAPYDVIYYGGCVSE-------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       204 ~~~~fD~I~~~~~~~~-------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      +.++||+|++...+.+       +++++.+.|||||.+++.+.
T Consensus       111 ~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  153 (260)
T 2avn_A          111 PSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVD  153 (260)
T ss_dssp             CTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeC
Confidence            5678999999765432       34788999999999998764

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.27  E-value=9.2e-12  Score=121.26  Aligned_cols=104  Identities=19%  Similarity=0.195  Sum_probs=82.7

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhcc--CCCcCCCCCeEEEEccCCCCC--CCCCC
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKG--NKDLLDSGRVRIVEADAREGY--LPEAP  207 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~~~~~~~~v~~~~~d~~~~~--~~~~~  207 (511)
                      .++.+|||||||+|.++..+++.. +..+|+++|+++.+++.|++++...  +   +..++++++++|+.+..  ...++
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~g---l~~~rv~~~~~D~~~~l~~~~~~~  194 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIG---YEDPRVNLVIGDGVAFLKNAAEGS  194 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGG---GGSTTEEEEESCHHHHHHTSCTTC
T ss_pred             CCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccc---cCCCcEEEEECCHHHHHHhccCCC
Confidence            467899999999999999999874 5679999999999999999998642  1   12458999999986421  12468


Q ss_pred             ccEEEecCCC----------CchHHHHHhhcccCcEEEEEEc
Q psy7829         208 YDVIYYGGCV----------SEVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       208 fD~I~~~~~~----------~~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      ||+|+++...          ..+.+.+.+.|||||.+++...
T Consensus       195 fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  236 (334)
T 1xj5_A          195 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE  236 (334)
T ss_dssp             EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             ccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence            9999997652          2345789999999999998643

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.27  E-value=1.3e-11  Score=120.44  Aligned_cols=116  Identities=16%  Similarity=0.024  Sum_probs=87.3

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      ....+.+.+.. ..++.+|||+|||+|.++..+++.. .  +|+++|+|+.+++.|++|++.++.   ...+++++++|+
T Consensus       140 ~~~~l~~~~~~-~~~~~~VLDlgcGtG~~sl~la~~g-a--~V~~VD~s~~al~~a~~n~~~~gl---~~~~v~~i~~D~  212 (332)
T 2igt_A          140 HWEWLKNAVET-ADRPLKVLNLFGYTGVASLVAAAAG-A--EVTHVDASKKAIGWAKENQVLAGL---EQAPIRWICEDA  212 (332)
T ss_dssp             HHHHHHHHHHH-SSSCCEEEEETCTTCHHHHHHHHTT-C--EEEEECSCHHHHHHHHHHHHHHTC---TTSCEEEECSCH
T ss_pred             HHHHHHHHHHh-cCCCCcEEEcccccCHHHHHHHHcC-C--EEEEEECCHHHHHHHHHHHHHcCC---CccceEEEECcH
Confidence            33445555531 3467899999999999999999863 3  899999999999999999988751   112599999998


Q ss_pred             CCCCCC----CCCccEEEecCCC----------------CchHHHHHhhcccCcEEEEEEccC
Q psy7829         199 REGYLP----EAPYDVIYYGGCV----------------SEVPSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       199 ~~~~~~----~~~fD~I~~~~~~----------------~~~~~~~~~~LkpgG~l~~~~~~~  241 (511)
                      .+....    .++||+|+++++.                ..+...+.+.|||||.+++.....
T Consensus       213 ~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~  275 (332)
T 2igt_A          213 MKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS  275 (332)
T ss_dssp             HHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             HHHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence            753221    3689999998774                123467789999999988866543

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.26  E-value=6.2e-11  Score=111.87  Aligned_cols=105  Identities=19%  Similarity=0.252  Sum_probs=77.4

Q ss_pred             CCCEEEEEcCCccH----HHHHHHHHhCC---CceEEEEeCCHHHHHHHHHHHhcc---------------------CCC
Q psy7829         133 DGAKVLDLGSGSGY----QTCVFAHMVGP---TGKVIGVEHIPELIEASLRNISKG---------------------NKD  184 (511)
Q Consensus       133 ~~~~vLDiG~G~G~----~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~---------------------~~~  184 (511)
                      ++.+|||+|||||.    +++.+++..+.   ..+|+|+|+|+.+++.|++++...                     +.+
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45799999999998    66667776542   358999999999999999875210                     000


Q ss_pred             -c-C---CCCCeEEEEccCCCC-CCCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEE
Q psy7829         185 -L-L---DSGRVRIVEADAREG-YLPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       185 -~-~---~~~~v~~~~~d~~~~-~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~  237 (511)
                       + +   ...+|.|.++|+.+. ++..++||+|+|.+++.++        .+++.+.|+|||.|++.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence             0 0   013699999999874 3324789999998877433        46788999999999874

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.26  E-value=2e-11  Score=120.33  Aligned_cols=106  Identities=21%  Similarity=0.235  Sum_probs=82.9

Q ss_pred             HHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC
Q psy7829         122 DAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG  201 (511)
Q Consensus       122 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  201 (511)
                      .+++.+.  ..++.+|||||||+|.++..+++.  ...+|+++|+++ +++.|+++++.++    ..++++++.+|+.+.
T Consensus        41 ~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~----l~~~v~~~~~d~~~~  111 (348)
T 2y1w_A           41 AILQNHT--DFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNN----LTDRIVVIPGKVEEV  111 (348)
T ss_dssp             HHHHTGG--GTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHHTT----CTTTEEEEESCTTTC
T ss_pred             HHHhccc--cCCcCEEEEcCCCccHHHHHHHhC--CCCEEEEECCHH-HHHHHHHHHHHcC----CCCcEEEEEcchhhC
Confidence            3444443  467899999999999999999886  346899999996 8899999988765    346899999999864


Q ss_pred             CCCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEE
Q psy7829         202 YLPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       202 ~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~  237 (511)
                      ..+ ++||+|++..+..++        ...+.+.|||||.+++.
T Consensus       112 ~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          112 SLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             CCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             CCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            333 689999998764322        24567999999999864

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.25  E-value=3e-11  Score=118.67  Aligned_cols=108  Identities=18%  Similarity=0.255  Sum_probs=87.8

Q ss_pred             HHHHHHhhcC--CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCC
Q psy7829         122 DAAENLKLHL--VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAR  199 (511)
Q Consensus       122 ~~~~~l~~~~--~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  199 (511)
                      .+++.+.  .  .++.+|||+|||+|..+..+++.. |..+++++|++ .+++.|++++...+    ..++++++.+|+.
T Consensus       154 ~~~~~~~--~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~----~~~~v~~~~~d~~  225 (335)
T 2r3s_A          154 LIAQLVN--ENKIEPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQG----VASRYHTIAGSAF  225 (335)
T ss_dssp             HHHHHHT--C--CCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHHT----CGGGEEEEESCTT
T ss_pred             HHHHhcc--cccCCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhcC----CCcceEEEecccc
Confidence            4455554  4  678899999999999999999987 77899999999 99999999988754    2347999999998


Q ss_pred             CCCCCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEEE
Q psy7829         200 EGYLPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       200 ~~~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~~  238 (511)
                      +...+ ..||+|++..+++++        ++++.+.|||||++++..
T Consensus       226 ~~~~~-~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e  271 (335)
T 2r3s_A          226 EVDYG-NDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFD  271 (335)
T ss_dssp             TSCCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCC-CCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence            64333 349999998887654        367899999999988853

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.25  E-value=1.3e-11  Score=118.54  Aligned_cols=117  Identities=15%  Similarity=0.209  Sum_probs=80.2

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCc-----------C-
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDL-----------L-  186 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-----------~-  186 (511)
                      ....+.+.+.....++.+|||||||+|..+..++..  ...+|+|+|+|+.|++.|++++.......           + 
T Consensus        57 ~~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~  134 (289)
T 2g72_A           57 KLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACS--HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIE  134 (289)
T ss_dssp             HHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGG--GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhcc--CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhc
Confidence            344555555422347889999999999955444443  24589999999999999998765321000           0 


Q ss_pred             C-C------------CCeEEEEccCCC-CC-----CCCCCccEEEecCCCCc----h------HHHHHhhcccCcEEEEE
Q psy7829         187 D-S------------GRVRIVEADARE-GY-----LPEAPYDVIYYGGCVSE----V------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       187 ~-~------------~~v~~~~~d~~~-~~-----~~~~~fD~I~~~~~~~~----~------~~~~~~~LkpgG~l~~~  237 (511)
                      + .            ..++++.+|+.. .+     .+.++||+|+++.++++    +      ++++.++|||||+|++.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~  214 (289)
T 2g72_A          135 GKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI  214 (289)
T ss_dssp             CSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CcccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            0 0            015677889876 22     12356999999988876    3      26789999999999995

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.25  E-value=2.9e-11  Score=118.64  Aligned_cols=99  Identities=17%  Similarity=0.112  Sum_probs=83.9

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEE
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVI  211 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I  211 (511)
                      .++.+|||+|||+|..+..+++.+ |..+++++|+ +.+++.|++++...+    ..++++|+.+|+.+..+  ..||+|
T Consensus       168 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~p--~~~D~v  239 (332)
T 3i53_A          168 AALGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLDTG----LSGRAQVVVGSFFDPLP--AGAGGY  239 (332)
T ss_dssp             GGGSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTT----CTTTEEEEECCTTSCCC--CSCSEE
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhhcC----cCcCeEEecCCCCCCCC--CCCcEE
Confidence            356799999999999999999987 7789999999 999999999988754    34689999999975433  279999


Q ss_pred             EecCCCCch--------HHHHHhhcccCcEEEEEE
Q psy7829         212 YYGGCVSEV--------PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       212 ~~~~~~~~~--------~~~~~~~LkpgG~l~~~~  238 (511)
                      ++...++++        ++++.+.|||||++++..
T Consensus       240 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e  274 (332)
T 3i53_A          240 VLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIE  274 (332)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             EEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            999888654        367899999999999853

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.25  E-value=1.4e-11  Score=117.83  Aligned_cols=100  Identities=27%  Similarity=0.249  Sum_probs=81.7

Q ss_pred             CEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC--CCCCCccEEE
Q psy7829         135 AKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY--LPEAPYDVIY  212 (511)
Q Consensus       135 ~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~I~  212 (511)
                      .+|||||||+|.++..+++.+ +..+|+++|+++.+++.|++++...     ..++++++++|+.+..  ...++||+|+
T Consensus        91 ~rVLdIG~G~G~la~~la~~~-p~~~v~~VEidp~vi~~Ar~~~~~~-----~~~rv~v~~~Da~~~l~~~~~~~fDvIi  164 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVY-PQSRNTVVELDAELARLSREWFDIP-----RAPRVKIRVDDARMVAESFTPASRDVII  164 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHS-TTCEEEEEESCHHHHHHHHHHSCCC-----CTTTEEEEESCHHHHHHTCCTTCEEEEE
T ss_pred             CEEEEEECCcCHHHHHHHHHC-CCcEEEEEECCHHHHHHHHHhcccc-----CCCceEEEECcHHHHHhhccCCCCCEEE
Confidence            499999999999999999976 6779999999999999999997652     3568999999987532  1247899999


Q ss_pred             ecCCCC----------chHHHHHhhcccCcEEEEEEcc
Q psy7829         213 YGGCVS----------EVPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       213 ~~~~~~----------~~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      ++...+          .+.+.+++.|||||.+++....
T Consensus       165 ~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~  202 (317)
T 3gjy_A          165 RDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGD  202 (317)
T ss_dssp             ECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence            975332          2457899999999999987653

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.25  E-value=3.3e-11  Score=117.76  Aligned_cols=99  Identities=24%  Similarity=0.279  Sum_probs=79.6

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ..++.+|||+|||+|.++..+++.  ...+|+++|++ .+++.|+++++.++    ..++++++.+|+.+...+.++||+
T Consensus        36 ~~~~~~VLDiGcGtG~ls~~la~~--g~~~v~~vD~s-~~~~~a~~~~~~~~----~~~~i~~~~~d~~~~~~~~~~~D~  108 (328)
T 1g6q_1           36 LFKDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMS-SIIEMAKELVELNG----FSDKITLLRGKLEDVHLPFPKVDI  108 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESS-THHHHHHHHHHHTT----CTTTEEEEESCTTTSCCSSSCEEE
T ss_pred             hcCCCEEEEecCccHHHHHHHHHC--CCCEEEEEChH-HHHHHHHHHHHHcC----CCCCEEEEECchhhccCCCCcccE
Confidence            457889999999999999999886  24589999999 69999999998865    346799999999875444478999


Q ss_pred             EEecCCCC---------chHHHHHhhcccCcEEEE
Q psy7829         211 IYYGGCVS---------EVPSRVLNQLKKGGRILA  236 (511)
Q Consensus       211 I~~~~~~~---------~~~~~~~~~LkpgG~l~~  236 (511)
                      |++..+..         .+...+.+.|||||.++.
T Consensus       109 Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          109 IISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             EEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             EEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            99875422         233567799999999973

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.25  E-value=1.9e-11  Score=112.66  Aligned_cols=105  Identities=20%  Similarity=0.167  Sum_probs=82.2

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829         121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE  200 (511)
Q Consensus       121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  200 (511)
                      ..+++.+.  ..++.+|||+|||+|.++..+++.   ..+|+++|+++.+++.++++  .         ++.+..+|+..
T Consensus        42 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~--~---------~~~~~~~~~~~  105 (227)
T 3e8s_A           42 QAILLAIL--GRQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA--G---------AGEVHLASYAQ  105 (227)
T ss_dssp             HHHHHHHH--HTCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT--C---------SSCEEECCHHH
T ss_pred             HHHHHHhh--cCCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh--c---------ccccchhhHHh
Confidence            44555554  456799999999999999999987   34799999999999999876  1         46777777653


Q ss_pred             C----CCCCCCccEEEecCCCC-----chHHHHHhhcccCcEEEEEEccC
Q psy7829         201 G----YLPEAPYDVIYYGGCVS-----EVPSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       201 ~----~~~~~~fD~I~~~~~~~-----~~~~~~~~~LkpgG~l~~~~~~~  241 (511)
                      .    .....+||+|++..+++     .+++++.+.|||||.+++.....
T Consensus       106 ~~~~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  155 (227)
T 3e8s_A          106 LAEAKVPVGKDYDLICANFALLHQDIIELLSAMRTLLVPGGALVIQTLHP  155 (227)
T ss_dssp             HHTTCSCCCCCEEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             hcccccccCCCccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEecCc
Confidence            2    23345699999998876     34589999999999999976644

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.24  E-value=1.9e-11  Score=121.70  Aligned_cols=98  Identities=27%  Similarity=0.256  Sum_probs=80.7

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ..++.+|||+|||+|.++..+++..  ..+|+|+|+| .+++.|+++++.++    ..++++++++|+.+...+ ++||+
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~g--~~~V~gvD~s-~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~-~~~D~  132 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMADHARALVKANN----LDHIVEVIEGSVEDISLP-EKVDV  132 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHTT--CSEEEEEESS-TTHHHHHHHHHHTT----CTTTEEEEESCGGGCCCS-SCEEE
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhcC--CCEEEEEccH-HHHHHHHHHHHHcC----CCCeEEEEECchhhcCcC-CcceE
Confidence            4678999999999999999999873  3589999999 99999999998875    345799999999875444 78999


Q ss_pred             EEecCCCC---------chHHHHHhhcccCcEEEE
Q psy7829         211 IYYGGCVS---------EVPSRVLNQLKKGGRILA  236 (511)
Q Consensus       211 I~~~~~~~---------~~~~~~~~~LkpgG~l~~  236 (511)
                      |+++...+         .+...+.+.|||||.+++
T Consensus       133 Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~  167 (376)
T 3r0q_C          133 IISEWMGYFLLRESMFDSVISARDRWLKPTGVMYP  167 (376)
T ss_dssp             EEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEES
T ss_pred             EEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEE
Confidence            99965332         134677899999999976

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.24  E-value=3.1e-11  Score=120.49  Aligned_cols=100  Identities=23%  Similarity=0.241  Sum_probs=84.3

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      +.++.+|||||||+|.++..+++.+ +..+++++|+ +.+++.|++++...+    ..++++++.+|+.+..+  ..||+
T Consensus       180 ~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~--~~~D~  251 (374)
T 1qzz_A          180 WSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAG----LADRVTVAEGDFFKPLP--VTADV  251 (374)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTT----CTTTEEEEECCTTSCCS--CCEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhcC----CCCceEEEeCCCCCcCC--CCCCE
Confidence            5678899999999999999999987 7789999999 999999999988754    34589999999876433  34999


Q ss_pred             EEecCCCCc--------hHHHHHhhcccCcEEEEEE
Q psy7829         211 IYYGGCVSE--------VPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       211 I~~~~~~~~--------~~~~~~~~LkpgG~l~~~~  238 (511)
                      |++..++++        +++++.+.|||||++++..
T Consensus       252 v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (374)
T 1qzz_A          252 VLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLD  287 (374)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            999988864        3477899999999998753

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.24  E-value=1.2e-10  Score=105.67  Aligned_cols=128  Identities=16%  Similarity=0.164  Sum_probs=91.3

Q ss_pred             CHHHH-HHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccccc
Q psy7829         356 SERSI-AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETI  431 (511)
Q Consensus       356 ~~~~~-~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~  431 (511)
                      +++.+ +.++..  +.+.++.+|||+|||+|.+++.+++.. |..+|+++|+++++++.++++..   ..+++++.+|..
T Consensus        24 ~~~~i~~~~l~~--l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~  100 (204)
T 3e05_A           24 TKQEVRAVTLSK--LRLQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAP  100 (204)
T ss_dssp             CCHHHHHHHHHH--TTCCTTCEEEEETCTTCHHHHHHHHHC-TTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTT
T ss_pred             ChHHHHHHHHHH--cCCCCCCEEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChh
Confidence            44555 445554  788899999999999999999999886 67899999999998888777653   467888888765


Q ss_pred             cccc--ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCC
Q psy7829         432 EIIP--HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIST  494 (511)
Q Consensus       432 ~~l~--~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~  494 (511)
                      +.++  ..+|.++.....        .....+...+.+.|+|+|.++..   ..-.+...+.+++.|+
T Consensus       101 ~~~~~~~~~D~i~~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~  160 (204)
T 3e05_A          101 EGLDDLPDPDRVFIGGSG--------GMLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGY  160 (204)
T ss_dssp             TTCTTSCCCSEEEESCCT--------TCHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred             hhhhcCCCCCEEEECCCC--------cCHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCC
Confidence            5443  223333222111        02345567778889999998877   4555666667777776

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.24  E-value=1.4e-10  Score=115.42  Aligned_cols=102  Identities=11%  Similarity=0.043  Sum_probs=84.1

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC--CCCCcc
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL--PEAPYD  209 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD  209 (511)
                      .++.+|||+| |+|.++..+++.. +..+|+++|+++.+++.|+++++.+|     ..+++++++|+.+..+  ..++||
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~-~~~~v~~vDi~~~~l~~a~~~~~~~g-----~~~v~~~~~D~~~~l~~~~~~~fD  243 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSG-LPKRIAVLDIDERLTKFIEKAANEIG-----YEDIEIFTFDLRKPLPDYALHKFD  243 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHT-CCSEEEEECSCHHHHHHHHHHHHHHT-----CCCEEEECCCTTSCCCTTTSSCBS
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC-----CCCEEEEEChhhhhchhhccCCcc
Confidence            3688999999 9999999998874 66799999999999999999999865     3389999999987333  236899


Q ss_pred             EEEecCCCC-----chHHHHHhhcccCcE-EEEEEcc
Q psy7829         210 VIYYGGCVS-----EVPSRVLNQLKKGGR-ILAPIGP  240 (511)
Q Consensus       210 ~I~~~~~~~-----~~~~~~~~~LkpgG~-l~~~~~~  240 (511)
                      +|+++.++.     .+.+++.+.|||||+ +++.+..
T Consensus       244 ~Vi~~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          244 TFITDPPETLEAIRAFVGRGIATLKGPRCAGYFGITR  280 (373)
T ss_dssp             EEEECCCSSHHHHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred             EEEECCCCchHHHHHHHHHHHHHcccCCeEEEEEEec
Confidence            999998874     345789999999994 4666654

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.24  E-value=6.1e-11  Score=117.61  Aligned_cols=108  Identities=19%  Similarity=0.271  Sum_probs=87.3

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829         121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE  200 (511)
Q Consensus       121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  200 (511)
                      ..+++.+.  ..++.+|||||||+|.++..+++.. |..+++++|+ +.+++.|++++...+    ..++++++.+|+.+
T Consensus       180 ~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~  251 (359)
T 1x19_A          180 QLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKG----VADRMRGIAVDIYK  251 (359)
T ss_dssp             HHHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTT----CTTTEEEEECCTTT
T ss_pred             HHHHHhcC--CCCCCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHhcC----CCCCEEEEeCcccc
Confidence            34444443  5678899999999999999999997 7789999999 999999999988754    24469999999986


Q ss_pred             CCCCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEEE
Q psy7829         201 GYLPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       201 ~~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~~  238 (511)
                      ...+  .+|+|++...++++        ++++.+.|||||++++..
T Consensus       252 ~~~~--~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e  295 (359)
T 1x19_A          252 ESYP--EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD  295 (359)
T ss_dssp             SCCC--CCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             CCCC--CCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            5333  34999999887644        367899999999998743

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.22  E-value=2.6e-11  Score=120.02  Aligned_cols=102  Identities=20%  Similarity=0.249  Sum_probs=84.6

Q ss_pred             CCC-CCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCc
Q psy7829         131 LVD-GAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPY  208 (511)
Q Consensus       131 ~~~-~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~f  208 (511)
                      ..+ +.+|||||||+|.++..+++.+ |..+++++|+ +.+++.+++++...+    ..++++++.+|+.+... ..+.|
T Consensus       176 ~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~  249 (352)
T 3mcz_A          176 VFARARTVIDLAGGHGTYLAQVLRRH-PQLTGQIWDL-PTTRDAARKTIHAHD----LGGRVEFFEKNLLDARNFEGGAA  249 (352)
T ss_dssp             GGTTCCEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTT----CGGGEEEEECCTTCGGGGTTCCE
T ss_pred             CcCCCCEEEEeCCCcCHHHHHHHHhC-CCCeEEEEEC-HHHHHHHHHHHHhcC----CCCceEEEeCCcccCcccCCCCc
Confidence            345 7899999999999999999987 7789999999 889999999988754    34579999999986531 23569


Q ss_pred             cEEEecCCCCch--------HHHHHhhcccCcEEEEEE
Q psy7829         209 DVIYYGGCVSEV--------PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       209 D~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~~  238 (511)
                      |+|++...++++        ++++.+.|||||++++..
T Consensus       250 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (352)
T 3mcz_A          250 DVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILT  287 (352)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            999999888643        367899999999998853

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.22  E-value=2.1e-11  Score=115.37  Aligned_cols=107  Identities=16%  Similarity=0.196  Sum_probs=81.4

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCc------------CC-----------
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDL------------LD-----------  187 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~------------~~-----------  187 (511)
                      ..++.+|||+|||+|.++..+++.. . .+|+++|+|+.+++.+++++...+...            -+           
T Consensus        54 ~~~~~~vLDlGcG~G~~~~~l~~~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (265)
T 2i62_A           54 AVKGELLIDIGSGPTIYQLLSACES-F-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK  131 (265)
T ss_dssp             SCCEEEEEEESCTTCCGGGTTGGGT-E-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred             ccCCCEEEEECCCccHHHHHHhhcc-c-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence            3567899999999999999888764 3 579999999999999999876531000            00           


Q ss_pred             -CCCe-EEEEccCCCCCC-CC---CCccEEEecCCCC----c------hHHHHHhhcccCcEEEEEEc
Q psy7829         188 -SGRV-RIVEADAREGYL-PE---APYDVIYYGGCVS----E------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       188 -~~~v-~~~~~d~~~~~~-~~---~~fD~I~~~~~~~----~------~~~~~~~~LkpgG~l~~~~~  239 (511)
                       ..++ +++++|+.+..+ ..   ++||+|++..+++    +      +++++.++|||||.+++...
T Consensus       132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  199 (265)
T 2i62_A          132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDA  199 (265)
T ss_dssp             HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence             0127 899999986432 33   7899999988876    4      23778999999999999764

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.22  E-value=4e-11  Score=117.73  Aligned_cols=99  Identities=17%  Similarity=0.264  Sum_probs=83.2

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ..+ .+|||+|||+|..+..+++.. |..+++++|+ +.+++.|++++...+    ..++++++.+|+.+.. + +.||+
T Consensus       166 ~~~-~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~-~-~~~D~  236 (334)
T 2ip2_A          166 FRG-RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSSLL----AGERVSLVGGDMLQEV-P-SNGDI  236 (334)
T ss_dssp             CTT-CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHHHH----HTTSEEEEESCTTTCC-C-SSCSE
T ss_pred             CCC-CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhhcC----CCCcEEEecCCCCCCC-C-CCCCE
Confidence            445 899999999999999999987 7789999999 999999999877643    2457999999998743 3 67999


Q ss_pred             EEecCCCCc--------hHHHHHhhcccCcEEEEEE
Q psy7829         211 IYYGGCVSE--------VPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       211 I~~~~~~~~--------~~~~~~~~LkpgG~l~~~~  238 (511)
                      |++...+++        +++++.+.|||||++++..
T Consensus       237 v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e  272 (334)
T 2ip2_A          237 YLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIE  272 (334)
T ss_dssp             EEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            999988863        3478899999999999853

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.21  E-value=2.4e-11  Score=107.37  Aligned_cols=96  Identities=18%  Similarity=0.289  Sum_probs=77.4

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC--------
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY--------  202 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--------  202 (511)
                      +.++.+|||+|||+|.++..+++.+++..+++++|+++ +++.               .+++++++|+.+..        
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~---------------~~~~~~~~d~~~~~~~~~~~~~   83 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI---------------VGVDFLQGDFRDELVMKALLER   83 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC---------------TTEEEEESCTTSHHHHHHHHHH
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc---------------CcEEEEEcccccchhhhhhhcc
Confidence            56888999999999999999999876678999999998 6421               36899999987642        


Q ss_pred             CCCCCccEEEecCCCC-----------------chHHHHHhhcccCcEEEEEEccCC
Q psy7829         203 LPEAPYDVIYYGGCVS-----------------EVPSRVLNQLKKGGRILAPIGPMD  242 (511)
Q Consensus       203 ~~~~~fD~I~~~~~~~-----------------~~~~~~~~~LkpgG~l~~~~~~~~  242 (511)
                      .+.++||+|+++.+++                 .+.+++.+.|+|||.+++......
T Consensus        84 ~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  140 (180)
T 1ej0_A           84 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE  140 (180)
T ss_dssp             HTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred             CCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence            3347899999987764                 344778899999999998765443

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.21  E-value=5.8e-11  Score=117.85  Aligned_cols=100  Identities=25%  Similarity=0.292  Sum_probs=84.2

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ..++.+|||+|||+|.++..+++.. +..+++++|+ +.+++.|++++...+    ..++++++.+|+.+..+  ..||+
T Consensus       181 ~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~--~~~D~  252 (360)
T 1tw3_A          181 WTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEG----LSDRVDVVEGDFFEPLP--RKADA  252 (360)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTT----CTTTEEEEECCTTSCCS--SCEEE
T ss_pred             CccCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHhcC----CCCceEEEeCCCCCCCC--CCccE
Confidence            5678899999999999999999986 7789999999 999999999988764    34589999999876443  34999


Q ss_pred             EEecCCCCc--------hHHHHHhhcccCcEEEEEE
Q psy7829         211 IYYGGCVSE--------VPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       211 I~~~~~~~~--------~~~~~~~~LkpgG~l~~~~  238 (511)
                      |++...+++        +++++.+.|||||++++..
T Consensus       253 v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e  288 (360)
T 1tw3_A          253 IILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHE  288 (360)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            999888754        3477899999999998853

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.21  E-value=5.6e-11  Score=118.14  Aligned_cols=114  Identities=18%  Similarity=0.098  Sum_probs=87.6

Q ss_pred             hhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEE
Q psy7829         116 APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE  195 (511)
Q Consensus       116 ~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  195 (511)
                      .+.+.+.++...   ..++.+|||+|||+|.+++.++... +.++|+|+|+++.+++.|++|+..+|    ..+++++.+
T Consensus       203 ~~~la~~l~~~~---~~~~~~vLD~gCGsG~~~i~~a~~~-~~~~v~g~Dis~~~l~~A~~n~~~~g----l~~~i~~~~  274 (373)
T 3tm4_A          203 KASIANAMIELA---ELDGGSVLDPMCGSGTILIELALRR-YSGEIIGIEKYRKHLIGAEMNALAAG----VLDKIKFIQ  274 (373)
T ss_dssp             CHHHHHHHHHHH---TCCSCCEEETTCTTCHHHHHHHHTT-CCSCEEEEESCHHHHHHHHHHHHHTT----CGGGCEEEE
T ss_pred             cHHHHHHHHHhh---cCCCCEEEEccCcCcHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcC----CCCceEEEE
Confidence            455566565554   5688999999999999999999875 55689999999999999999999875    236899999


Q ss_pred             ccCCCCCCCCCCccEEEecCCCCc--------------hHHHHHhhcccCcEEEEEEc
Q psy7829         196 ADAREGYLPEAPYDVIYYGGCVSE--------------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       196 ~d~~~~~~~~~~fD~I~~~~~~~~--------------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      +|+.+.....++||+|++++++..              +.+.+.+.|  +|.+++...
T Consensus       275 ~D~~~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~  330 (373)
T 3tm4_A          275 GDATQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT  330 (373)
T ss_dssp             CCGGGGGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES
T ss_pred             CChhhCCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC
Confidence            999875544578999999988532              235666767  555555443

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.21  E-value=2.9e-11  Score=116.15  Aligned_cols=107  Identities=24%  Similarity=0.202  Sum_probs=81.8

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC-CCCCCccE
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY-LPEAPYDV  210 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~  210 (511)
                      ..+.+|||+|||+|..+..+++.. +..+|+++|+++.+++.|++++...+.. +..++++++.+|+.... ...++||+
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~~-~~~~~v~~~~~D~~~~l~~~~~~fD~  166 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCG-FDDPRAEIVIANGAEYVRKFKNEFDV  166 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGG-GGCTTEEEEESCHHHHGGGCSSCEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccc-cCCCceEEEECcHHHHHhhCCCCceE
Confidence            456899999999999999999875 5679999999999999999997541000 12468999999976422 12468999


Q ss_pred             EEecCCCC-----------chHHHHHhhcccCcEEEEEEcc
Q psy7829         211 IYYGGCVS-----------EVPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       211 I~~~~~~~-----------~~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      |+++.+.+           .+.+.+.+.|||||.+++....
T Consensus       167 Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  207 (296)
T 1inl_A          167 IIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED  207 (296)
T ss_dssp             EEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence            99876433           3457899999999999997543

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.21  E-value=3.2e-11  Score=116.14  Aligned_cols=104  Identities=18%  Similarity=0.155  Sum_probs=82.8

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhc--cCCCcCCCCCeEEEEccCCCCC-CCCCCc
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISK--GNKDLLDSGRVRIVEADAREGY-LPEAPY  208 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~--~~~~~~~~~~v~~~~~d~~~~~-~~~~~f  208 (511)
                      .++.+|||||||+|..+..+++.. +..+|+++|+++.+++.|++++..  .+   +..++++++.+|+.+.. ...++|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~---~~~~rv~v~~~Da~~~l~~~~~~f  169 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIG---YSSSKLTLHVGDGFEFMKQNQDAF  169 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGG---GGCTTEEEEESCHHHHHHTCSSCE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcc---cCCCcEEEEECcHHHHHhhCCCCc
Confidence            467899999999999999999874 567999999999999999999764  11   12468999999986421 124789


Q ss_pred             cEEEecCCCC----------chHHHHHhhcccCcEEEEEEc
Q psy7829         209 DVIYYGGCVS----------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       209 D~I~~~~~~~----------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      |+|+++.+.+          .+.+++.+.|||||.+++...
T Consensus       170 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  210 (304)
T 2o07_A          170 DVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE  210 (304)
T ss_dssp             EEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence            9999986642          356889999999999998764

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.21  E-value=4.4e-11  Score=113.68  Aligned_cols=106  Identities=23%  Similarity=0.199  Sum_probs=83.7

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC-CCCCCccE
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY-LPEAPYDV  210 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~  210 (511)
                      ..+.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++++...... +..++++++.+|+.+.. ...++||+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~~-~~~~rv~v~~~D~~~~l~~~~~~fD~  151 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGK-LDDPRVDVQVDDGFMHIAKSENQYDV  151 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTT-TTSTTEEEEESCSHHHHHTCCSCEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhccc-cCCCceEEEECcHHHHHhhCCCCeeE
Confidence            357899999999999999998864 4678999999999999999987542100 13568999999986422 12478999


Q ss_pred             EEecCCCC----------chHHHHHhhcccCcEEEEEEc
Q psy7829         211 IYYGGCVS----------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       211 I~~~~~~~----------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      |+++...+          .+.+.+.+.|||||.+++...
T Consensus       152 Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~  190 (275)
T 1iy9_A          152 IMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD  190 (275)
T ss_dssp             EEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence            99987542          356899999999999998754

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.20  E-value=3.1e-11  Score=123.50  Aligned_cols=99  Identities=21%  Similarity=0.246  Sum_probs=79.6

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ..++.+|||||||+|.++..+++.  +..+|+++|+++ +++.|++++..++    ..++++++.+|+.+...+ ++||+
T Consensus       156 ~~~~~~VLDiGcGtG~la~~la~~--~~~~V~gvD~s~-~l~~A~~~~~~~g----l~~~v~~~~~d~~~~~~~-~~fD~  227 (480)
T 3b3j_A          156 DFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNN----LTDRIVVIPGKVEEVSLP-EQVDI  227 (480)
T ss_dssp             GTTTCEEEEESCSTTHHHHHHHHT--TCSEEEEEECHH-HHHHHHHHHHHTT----CTTTEEEEESCTTTCCCS-SCEEE
T ss_pred             hcCCCEEEEecCcccHHHHHHHHc--CCCEEEEEEcHH-HHHHHHHHHHHcC----CCCcEEEEECchhhCccC-CCeEE
Confidence            357889999999999999998884  456899999998 9999999998865    346899999999873322 68999


Q ss_pred             EEecCCCCch--------HHHHHhhcccCcEEEEE
Q psy7829         211 IYYGGCVSEV--------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       211 I~~~~~~~~~--------~~~~~~~LkpgG~l~~~  237 (511)
                      |+++.+..+.        ...+.+.|||||.+++.
T Consensus       228 Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          228 IISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             EECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred             EEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence            9998764322        24557899999999863

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.20  E-value=2.4e-11  Score=115.94  Aligned_cols=106  Identities=23%  Similarity=0.212  Sum_probs=82.4

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcC-------CCCCeEEEEccCCCCCC
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLL-------DSGRVRIVEADAREGYL  203 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-------~~~~v~~~~~d~~~~~~  203 (511)
                      ..++.+|||||||+|.++..+++.  +..+|+++|+++.+++.|++++ ....+ +       ..++++++.+|+.+...
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~--~~~~v~~vDid~~~i~~ar~~~-~~~~~-l~~~~~~~~~~~v~~~~~D~~~~l~  148 (281)
T 1mjf_A           73 HPKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLI-KIDNG-LLEAMLNGKHEKAKLTIGDGFEFIK  148 (281)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHT-CTTTT-HHHHHHTTCCSSEEEEESCHHHHHH
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHH-hhccc-cccccccCCCCcEEEEECchHHHhc
Confidence            346789999999999999999987  4678999999999999999998 42100 1       24689999999754211


Q ss_pred             CCCCccEEEecCCC----------CchHHHHHhhcccCcEEEEEEcc
Q psy7829         204 PEAPYDVIYYGGCV----------SEVPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       204 ~~~~fD~I~~~~~~----------~~~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      ..++||+|+++.+.          ..+.+.+.+.|+|||.+++..+.
T Consensus       149 ~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~  195 (281)
T 1mjf_A          149 NNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS  195 (281)
T ss_dssp             HCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ccCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            14689999998764          22457899999999999987543

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.20  E-value=5.3e-11  Score=113.78  Aligned_cols=111  Identities=17%  Similarity=0.210  Sum_probs=87.5

Q ss_pred             chhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEE
Q psy7829         115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIV  194 (511)
Q Consensus       115 ~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~  194 (511)
                      ..+.+...+++.+.  +.++.+|||+|||+|.++..+++..   .+|+++|+++.+++.+++++...+    ..++++++
T Consensus        12 ~d~~i~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~---~~v~~vD~~~~~~~~a~~~~~~~~----~~~~v~~~   82 (285)
T 1zq9_A           12 KNPLIINSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTP----VASKLQVL   82 (285)
T ss_dssp             CCHHHHHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTST----TGGGEEEE
T ss_pred             CCHHHHHHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHhcC----CCCceEEE
Confidence            46778888888776  6788999999999999999999984   379999999999999999987643    23589999


Q ss_pred             EccCCCCCCCCCCccEEEecCCCCchH---------------------HHH--HhhcccCcEEEE
Q psy7829         195 EADAREGYLPEAPYDVIYYGGCVSEVP---------------------SRV--LNQLKKGGRILA  236 (511)
Q Consensus       195 ~~d~~~~~~~~~~fD~I~~~~~~~~~~---------------------~~~--~~~LkpgG~l~~  236 (511)
                      ++|+.+...  ..||+|+++.+++...                     +++  ...|+|||.++.
T Consensus        83 ~~D~~~~~~--~~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y~  145 (285)
T 1zq9_A           83 VGDVLKTDL--PFFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLYC  145 (285)
T ss_dssp             ESCTTTSCC--CCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTCS
T ss_pred             Ecceecccc--hhhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcccc
Confidence            999976432  3799999987765421                     222  257899998753

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.19  E-value=4.5e-11  Score=115.37  Aligned_cols=106  Identities=20%  Similarity=0.153  Sum_probs=82.4

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC--CCCCcc
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL--PEAPYD  209 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD  209 (511)
                      .++.+|||||||+|..+..+++.. +..+|+++|+++.+++.|++++...... ...++++++.+|+.+...  ..++||
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~-~~~~~v~~~~~D~~~~~~~~~~~~fD  171 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRS-LADPRATVRVGDGLAFVRQTPDNTYD  171 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGG-GGCTTEEEEESCHHHHHHSSCTTCEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcc-cCCCcEEEEECcHHHHHHhccCCcee
Confidence            567899999999999999999864 5679999999999999999987421000 134689999999875322  247899


Q ss_pred             EEEecCCCC----------chHHHHHhhcccCcEEEEEEc
Q psy7829         210 VIYYGGCVS----------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       210 ~I~~~~~~~----------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      +|+++...+          .+.+++.+.|||||.+++...
T Consensus       172 vIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  211 (304)
T 3bwc_A          172 VVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGE  211 (304)
T ss_dssp             EEEEECC---------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence            999986543          345789999999999998654

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.18  E-value=9.1e-11  Score=111.79  Aligned_cols=106  Identities=19%  Similarity=0.147  Sum_probs=86.5

Q ss_pred             ccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeE
Q psy7829         113 VMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVR  192 (511)
Q Consensus       113 ~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~  192 (511)
                      .+..+.+...+++.+.  +.++.+|||||||+|.++..+++..   .+|+++|+++.+++.+++++..       .++++
T Consensus        32 fL~d~~i~~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~~---~~V~aVEid~~li~~a~~~~~~-------~~~v~   99 (295)
T 3gru_A           32 FLIDKNFVNKAVESAN--LTKDDVVLEIGLGKGILTEELAKNA---KKVYVIEIDKSLEPYANKLKEL-------YNNIE   99 (295)
T ss_dssp             EECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCGGGHHHHHHHHHH-------CSSEE
T ss_pred             ccCCHHHHHHHHHhcC--CCCcCEEEEECCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHhcc-------CCCeE
Confidence            4557778888998886  7789999999999999999999973   4799999999999999999874       34899


Q ss_pred             EEEccCCCCCCCCCCccEEEecCCCCchHHHHHhhccc
Q psy7829         193 IVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKK  230 (511)
Q Consensus       193 ~~~~d~~~~~~~~~~fD~I~~~~~~~~~~~~~~~~Lkp  230 (511)
                      ++++|+.+...+..+||.|+++.++.....-+.++|++
T Consensus       100 vi~gD~l~~~~~~~~fD~Iv~NlPy~is~pil~~lL~~  137 (295)
T 3gru_A          100 IIWGDALKVDLNKLDFNKVVANLPYQISSPITFKLIKR  137 (295)
T ss_dssp             EEESCTTTSCGGGSCCSEEEEECCGGGHHHHHHHHHHH
T ss_pred             EEECchhhCCcccCCccEEEEeCcccccHHHHHHHHhc
Confidence            99999987444446799999998876554555555554

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.18  E-value=3.5e-11  Score=116.84  Aligned_cols=107  Identities=21%  Similarity=0.164  Sum_probs=83.3

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC-CCCCCccE
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY-LPEAPYDV  210 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~  210 (511)
                      .++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++++..... .+..++++++++|+.+.. ...++||+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~-~~~~~~v~~~~~D~~~~l~~~~~~fDv  192 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISC-GYEDKRVNVFIEDASKFLENVTNTYDV  192 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSG-GGGSTTEEEEESCHHHHHHHCCSCEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhcc-ccCCCcEEEEEccHHHHHhhcCCCceE
Confidence            467899999999999999999864 567999999999999999999865210 012468999999986422 12368999


Q ss_pred             EEecCCC----------CchHHHHHhhcccCcEEEEEEcc
Q psy7829         211 IYYGGCV----------SEVPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       211 I~~~~~~----------~~~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      |+++...          ..+.+.+.+.|||||.+++....
T Consensus       193 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  232 (321)
T 2pt6_A          193 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES  232 (321)
T ss_dssp             EEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            9988632          23457899999999999997543

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.18  E-value=6.6e-11  Score=116.39  Aligned_cols=97  Identities=25%  Similarity=0.297  Sum_probs=77.0

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEE
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVI  211 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I  211 (511)
                      .+|.+|||||||+|.++..+|++.  ..+|+++|.|+ +++.|+++++.++    ..++|+++.+|+.+...+ .+||+|
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~aG--A~~V~ave~s~-~~~~a~~~~~~n~----~~~~i~~i~~~~~~~~lp-e~~Dvi  153 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQAG--ARRVYAVEASA-IWQQAREVVRFNG----LEDRVHVLPGPVETVELP-EQVDAI  153 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEECST-THHHHHHHHHHTT----CTTTEEEEESCTTTCCCS-SCEEEE
T ss_pred             cCCCEEEEeCCCccHHHHHHHHhC--CCEEEEEeChH-HHHHHHHHHHHcC----CCceEEEEeeeeeeecCC-ccccEE
Confidence            378999999999999999888864  35899999986 8899999999886    467899999999864433 789999


Q ss_pred             EecCCC---------CchHHHHHhhcccCcEEEE
Q psy7829         212 YYGGCV---------SEVPSRVLNQLKKGGRILA  236 (511)
Q Consensus       212 ~~~~~~---------~~~~~~~~~~LkpgG~l~~  236 (511)
                      ++...-         ..+.....++|||||.++-
T Consensus       154 vsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          154 VSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             ECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             EeecccccccccchhhhHHHHHHhhCCCCceECC
Confidence            984321         1233556799999999863

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.18  E-value=4.9e-11  Score=118.95  Aligned_cols=105  Identities=19%  Similarity=0.127  Sum_probs=83.5

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCC-CeEEEEccCCCCCC----CCC
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG-RVRIVEADAREGYL----PEA  206 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~----~~~  206 (511)
                      .++.+|||+|||+|.++..+++..  ..+|+++|+|+.+++.|++|++.++    ..+ +++|+++|+.+...    ...
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~g--a~~V~~vD~s~~al~~A~~N~~~n~----~~~~~v~~~~~D~~~~l~~~~~~~~  284 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANH----LDMANHQLVVMDVFDYFKYARRHHL  284 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTT----CCCTTEEEEESCHHHHHHHHHHTTC
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcC----CCccceEEEECCHHHHHHHHHHhCC
Confidence            578899999999999999999853  3479999999999999999999875    223 89999999865221    135


Q ss_pred             CccEEEecCCCC-----c----------hHHHHHhhcccCcEEEEEEccCC
Q psy7829         207 PYDVIYYGGCVS-----E----------VPSRVLNQLKKGGRILAPIGPMD  242 (511)
Q Consensus       207 ~fD~I~~~~~~~-----~----------~~~~~~~~LkpgG~l~~~~~~~~  242 (511)
                      +||+|+++++..     .          +...+.+.|+|||.+++......
T Consensus       285 ~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~  335 (385)
T 2b78_A          285 TYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN  335 (385)
T ss_dssp             CEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             CccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence            899999987763     1          22456799999999999876443

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.17  E-value=1.4e-10  Score=109.26  Aligned_cols=134  Identities=22%  Similarity=0.274  Sum_probs=97.6

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---cccc-ccccccc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNH-IDLIANE  429 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~-v~~i~~d  429 (511)
                      +..+..+..++..  +.+.++.+|||+|||+|.++..+++.++|.++|+++|+++++++.+++++   +..+ ++++.+|
T Consensus        76 ~~~~~~~~~i~~~--~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d  153 (255)
T 3mb5_A           76 IVHPKDAALIVAY--AGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKD  153 (255)
T ss_dssp             CCCHHHHHHHHHH--TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSC
T ss_pred             cccHhHHHHHHHh--hCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECc
Confidence            3466777777776  78889999999999999999999999767799999999999888887776   3444 8888888


Q ss_pred             cccccc-ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcC--CCceEE
Q psy7829         430 TIEIIP-HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIS--TNHIDL  499 (511)
Q Consensus       430 ~~~~l~-~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~--~~~i~~  499 (511)
                      ..+.++ ..+|.++.+..          .+-.+...+.+.|+|+|.++..   ..-.+...+.+.+.+  +..++.
T Consensus       154 ~~~~~~~~~~D~v~~~~~----------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~f~~~~~  219 (255)
T 3mb5_A          154 IYEGIEEENVDHVILDLP----------QPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRT  219 (255)
T ss_dssp             GGGCCCCCSEEEEEECSS----------CGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTGGGBSCCEE
T ss_pred             hhhccCCCCcCEEEECCC----------CHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCccccEE
Confidence            765443 23555544322          1233457788899999998876   444455566666666  544444

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.17  E-value=2.2e-10  Score=109.38  Aligned_cols=107  Identities=18%  Similarity=0.205  Sum_probs=78.3

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeC-CHHHHHHHHHHHhccCCCcCCC-----CCeEEEEccCCCCC---
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEH-IPELIEASLRNISKGNKDLLDS-----GRVRIVEADAREGY---  202 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~~~-----~~v~~~~~d~~~~~---  202 (511)
                      .++.+|||+|||+|.++..+++..  ..+|+++|+ ++.+++.|++++..+.....+.     +++++...|..+..   
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~--~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  155 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAG--ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL  155 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTT--CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcC--CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence            578899999999999999888863  358999999 8999999999994321000012     37888877654321   


Q ss_pred             C---CCCCccEEEecCCCCc------hHHHHHhhcc---c--CcEEEEEEcc
Q psy7829         203 L---PEAPYDVIYYGGCVSE------VPSRVLNQLK---K--GGRILAPIGP  240 (511)
Q Consensus       203 ~---~~~~fD~I~~~~~~~~------~~~~~~~~Lk---p--gG~l~~~~~~  240 (511)
                      .   ..++||+|++..++.+      +.+.+.++|+   |  ||.+++.+.+
T Consensus       156 ~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~  207 (281)
T 3bzb_A          156 QRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTH  207 (281)
T ss_dssp             HHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC
T ss_pred             HhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEe
Confidence            1   2468999998776654      3478899999   9  9998875543

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.17  E-value=4.6e-11  Score=115.39  Aligned_cols=106  Identities=17%  Similarity=0.115  Sum_probs=82.5

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC-CCCCCccE
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY-LPEAPYDV  210 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~  210 (511)
                      .++.+|||||||+|..+..+++.. +..+|+++|+++.+++.|++++.....+ +..++++++.+|+.+.. ...++||+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~-~~~~rv~~~~~D~~~~l~~~~~~fD~  184 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCG-FSHPKLDLFCGDGFEFLKNHKNEFDV  184 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGG-GGCTTEEEECSCHHHHHHHCTTCEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccc-cCCCCEEEEEChHHHHHHhcCCCceE
Confidence            456899999999999999999874 5689999999999999999998653100 12468999999986422 13478999


Q ss_pred             EEecCCC----------CchHHHHHhhcccCcEEEEEEc
Q psy7829         211 IYYGGCV----------SEVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       211 I~~~~~~----------~~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      |+++...          ..+.+.+.+.|+|||.+++..+
T Consensus       185 Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~  223 (314)
T 2b2c_A          185 IITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE  223 (314)
T ss_dssp             EEECCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred             EEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECC
Confidence            9987642          3456889999999999998653

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.16  E-value=5.2e-11  Score=115.42  Aligned_cols=107  Identities=24%  Similarity=0.256  Sum_probs=83.2

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC-CCCCCccE
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY-LPEAPYDV  210 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~  210 (511)
                      .++.+|||||||+|..+..+++.. +..+|+++|+++.+++.|++++...+.+.+..++++++.+|+.+.. ...++||+
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~  154 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV  154 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccE
Confidence            466899999999999999999874 5678999999999999999987641100001468999999986522 12478999


Q ss_pred             EEecCCCCc-------------hHHHHHhhcccCcEEEEEEc
Q psy7829         211 IYYGGCVSE-------------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       211 I~~~~~~~~-------------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      |+++...+.             +.+.+.+.|||||.+++..+
T Consensus       155 Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  196 (314)
T 1uir_A          155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG  196 (314)
T ss_dssp             EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence            999876543             34789999999999998654

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.16  E-value=1.9e-10  Score=112.61  Aligned_cols=98  Identities=17%  Similarity=0.133  Sum_probs=83.0

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      +.++.+|||+|||+|.++.. ++ .  ..+|+++|+|+.+++.|++|++.++    ..++++++++|+.+..   ++||+
T Consensus       193 ~~~~~~VLDlg~G~G~~~l~-a~-~--~~~V~~vD~s~~ai~~a~~n~~~n~----l~~~v~~~~~D~~~~~---~~fD~  261 (336)
T 2yx1_A          193 VSLNDVVVDMFAGVGPFSIA-CK-N--AKKIYAIDINPHAIELLKKNIKLNK----LEHKIIPILSDVREVD---VKGNR  261 (336)
T ss_dssp             CCTTCEEEETTCTTSHHHHH-TT-T--SSEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEESCGGGCC---CCEEE
T ss_pred             cCCCCEEEEccCccCHHHHh-cc-C--CCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEECChHHhc---CCCcE
Confidence            56889999999999999999 77 2  5689999999999999999999875    2358999999998754   78999


Q ss_pred             EEecCCCC--chHHHHHhhcccCcEEEEEEc
Q psy7829         211 IYYGGCVS--EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       211 I~~~~~~~--~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      |+++.+..  .+...+.+.|+|||.+++...
T Consensus       262 Vi~dpP~~~~~~l~~~~~~L~~gG~l~~~~~  292 (336)
T 2yx1_A          262 VIMNLPKFAHKFIDKALDIVEEGGVIHYYTI  292 (336)
T ss_dssp             EEECCTTTGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             EEECCcHhHHHHHHHHHHHcCCCCEEEEEEe
Confidence            99986643  466889999999999988543

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.15  E-value=1.2e-10  Score=106.99  Aligned_cols=89  Identities=21%  Similarity=0.292  Sum_probs=73.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY  212 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~  212 (511)
                      ++.+|||+|||+|.++..+++.       +++|+++.+++.++++            +++++++|+.......++||+|+
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~------------~~~~~~~d~~~~~~~~~~fD~v~  107 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR------------GVFVLKGTAENLPLKDESFDFAL  107 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT------------TCEEEECBTTBCCSCTTCEEEEE
T ss_pred             CCCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc------------CCEEEEcccccCCCCCCCeeEEE
Confidence            4889999999999998877543       8999999999999875            37899999876544557899999


Q ss_pred             ecCCCCch------HHHHHhhcccCcEEEEEEcc
Q psy7829         213 YGGCVSEV------PSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       213 ~~~~~~~~------~~~~~~~LkpgG~l~~~~~~  240 (511)
                      +..+++++      ++++.+.|+|||.+++....
T Consensus       108 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  141 (219)
T 1vlm_A          108 MVTTICFVDDPERALKEAYRILKKGGYLIVGIVD  141 (219)
T ss_dssp             EESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeC
Confidence            99887654      47889999999999997553

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.15  E-value=6.1e-11  Score=118.04  Aligned_cols=100  Identities=17%  Similarity=0.100  Sum_probs=78.7

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCcc
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYD  209 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD  209 (511)
                      .++|.+|||+|||+|.++..+++.. .  .|+++|+|+.+++.|++|++.++.     . .++.++|+.+... ..+.||
T Consensus       212 ~~~g~~VLDlg~GtG~~sl~~a~~g-a--~V~avDis~~al~~a~~n~~~ng~-----~-~~~~~~D~~~~l~~~~~~fD  282 (393)
T 4dmg_A          212 VRPGERVLDVYSYVGGFALRAARKG-A--YALAVDKDLEALGVLDQAALRLGL-----R-VDIRHGEALPTLRGLEGPFH  282 (393)
T ss_dssp             CCTTCEEEEESCTTTHHHHHHHHTT-C--EEEEEESCHHHHHHHHHHHHHHTC-----C-CEEEESCHHHHHHTCCCCEE
T ss_pred             hcCCCeEEEcccchhHHHHHHHHcC-C--eEEEEECCHHHHHHHHHHHHHhCC-----C-CcEEEccHHHHHHHhcCCCC
Confidence            4569999999999999999999863 3  499999999999999999998752     2 3566889865321 124499


Q ss_pred             EEEecCCC---------------CchHHHHHhhcccCcEEEEEEc
Q psy7829         210 VIYYGGCV---------------SEVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       210 ~I~~~~~~---------------~~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      +|+++++.               ..+...+.+.|||||.|++...
T Consensus       283 ~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~  327 (393)
T 4dmg_A          283 HVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC  327 (393)
T ss_dssp             EEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            99999886               2344678899999999996443

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.15  E-value=1.1e-10  Score=104.65  Aligned_cols=93  Identities=20%  Similarity=0.267  Sum_probs=72.0

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-------
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-------  203 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-------  203 (511)
                      ++++.+|||+|||+|.++..+++.   .++|+|+|+++..                ..++++++++|+.+...       
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~----------------~~~~v~~~~~D~~~~~~~~~~~~~   83 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME----------------EIAGVRFIRCDIFKETIFDDIDRA   83 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC----------------CCTTCEEEECCTTSSSHHHHHHHH
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc----------------cCCCeEEEEccccCHHHHHHHHHH
Confidence            568999999999999999999987   5689999999741                23479999999876321       


Q ss_pred             -C---CCCccEEEecCCCC-----------------chHHHHHhhcccCcEEEEEEccCC
Q psy7829         204 -P---EAPYDVIYYGGCVS-----------------EVPSRVLNQLKKGGRILAPIGPMD  242 (511)
Q Consensus       204 -~---~~~fD~I~~~~~~~-----------------~~~~~~~~~LkpgG~l~~~~~~~~  242 (511)
                       .   .++||+|+++.+..                 .+++.+.++|||||.|++.+....
T Consensus        84 ~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~  143 (191)
T 3dou_A           84 LREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGD  143 (191)
T ss_dssp             HHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST
T ss_pred             hhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCC
Confidence             0   04899999986542                 123567899999999999776443

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.13  E-value=4.4e-10  Score=113.96  Aligned_cols=128  Identities=20%  Similarity=0.265  Sum_probs=93.2

Q ss_pred             CcccccCCCcccc-----hhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7829         103 DVSASLGYAGVMN-----APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN  177 (511)
Q Consensus       103 ~~~~~~~~~~~~~-----~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~  177 (511)
                      +..+.+..+..+.     ...+...+++.+.  ..++.+|||+|||+|.++..+++.   ..+|+|+|+|+.+++.|++|
T Consensus       253 g~~~~~~~~~f~q~n~~~~e~l~~~~~~~l~--~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n  327 (433)
T 1uwv_A          253 GLRLTFSPRDFIQVNAGVNQKMVARALEWLD--VQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQN  327 (433)
T ss_dssp             TEEEECCSSSCCCSBHHHHHHHHHHHHHHHT--CCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEECcccccccCHHHHHHHHHHHHHhhc--CCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHH
Confidence            4445555444443     1224444555554  567889999999999999999987   35799999999999999999


Q ss_pred             HhccCCCcCCCCCeEEEEccCCCCCC----CCCCccEEEecCCCCchH---HHHHhhcccCcEEEEEEccC
Q psy7829         178 ISKGNKDLLDSGRVRIVEADAREGYL----PEAPYDVIYYGGCVSEVP---SRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       178 ~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fD~I~~~~~~~~~~---~~~~~~LkpgG~l~~~~~~~  241 (511)
                      +..++     .+|++|+++|+.+...    ..++||+|+++++.....   +.+ ..++|++.+++++.+.
T Consensus       328 ~~~~~-----~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g~~~~~~~l-~~~~p~~ivyvsc~p~  392 (433)
T 1uwv_A          328 ARLNG-----LQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQI-IKLEPIRIVYVSCNPA  392 (433)
T ss_dssp             HHHTT-----CCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCCHHHHHHH-HHHCCSEEEEEESCHH
T ss_pred             HHHcC-----CCceEEEECCHHHHhhhhhhhcCCCCEEEECCCCccHHHHHHHH-HhcCCCeEEEEECChH
Confidence            98864     4589999999986432    236799999998875443   222 2368999998877643

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.13  E-value=5.5e-11  Score=119.38  Aligned_cols=104  Identities=17%  Similarity=0.145  Sum_probs=84.4

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCC-CCCeEEEEccCCCCCC----CCC
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD-SGRVRIVEADAREGYL----PEA  206 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~----~~~  206 (511)
                      .++.+|||+|||+|.++..+++..  ..+|+++|+++.+++.|++|++.++    . .++++++++|+.+...    ...
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g--~~~V~~vD~s~~al~~a~~n~~~ng----l~~~~v~~~~~D~~~~~~~~~~~~~  292 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNK----LDLSKAEFVRDDVFKLLRTYRDRGE  292 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTT----CCGGGEEEEESCHHHHHHHHHHTTC
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcC----CCccceEEEECCHHHHHHHHHhcCC
Confidence            578899999999999999999863  4589999999999999999999875    2 2389999999875322    136


Q ss_pred             CccEEEecCCCC---------------chHHHHHhhcccCcEEEEEEccC
Q psy7829         207 PYDVIYYGGCVS---------------EVPSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       207 ~fD~I~~~~~~~---------------~~~~~~~~~LkpgG~l~~~~~~~  241 (511)
                      +||+|+++++..               .+...+.+.|+|||.++++..+.
T Consensus       293 ~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  342 (396)
T 3c0k_A          293 KFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG  342 (396)
T ss_dssp             CEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             CCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            899999998761               23467889999999999976543

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.12  E-value=5e-11  Score=119.04  Aligned_cols=100  Identities=24%  Similarity=0.265  Sum_probs=83.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC----CCCCc
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL----PEAPY  208 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~f  208 (511)
                      ++.+|||+|||+|.++..+++.   ..+|+++|+++.+++.|++|++.++     .++++++++|+.+...    ...+|
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~-----~~~~~~~~~d~~~~~~~~~~~~~~f  280 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNG-----LGNVRVLEANAFDLLRRLEKEGERF  280 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTT-----CTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcC-----CCCceEEECCHHHHHHHHHhcCCCe
Confidence            7889999999999999999987   3579999999999999999999874     4569999999875322    14689


Q ss_pred             cEEEecCCCC---------------chHHHHHhhcccCcEEEEEEcc
Q psy7829         209 DVIYYGGCVS---------------EVPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       209 D~I~~~~~~~---------------~~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      |+|+++++..               .+...+.+.|+|||.+++....
T Consensus       281 D~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  327 (382)
T 1wxx_A          281 DLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  327 (382)
T ss_dssp             EEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             eEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            9999998762               2446788999999999987654

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.12  E-value=5.9e-10  Score=111.02  Aligned_cols=120  Identities=13%  Similarity=-0.010  Sum_probs=91.1

Q ss_pred             cchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCC------------------------------------
Q psy7829         114 MNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGP------------------------------------  157 (511)
Q Consensus       114 ~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~------------------------------------  157 (511)
                      ...+.+.+.++.+..  ..++..|||.+||+|.+++.++.....                                    
T Consensus       184 pl~e~lAa~ll~l~~--~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~  261 (393)
T 3k0b_A          184 PIKETMAAALVLLTS--WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYD  261 (393)
T ss_dssp             SCCHHHHHHHHHHSC--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTT
T ss_pred             CCcHHHHHHHHHHhC--CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhccc
Confidence            335566666666654  678889999999999999988876521                                    


Q ss_pred             -CceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCCc----------hHHHHHh
Q psy7829         158 -TGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSE----------VPSRVLN  226 (511)
Q Consensus       158 -~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~----------~~~~~~~  226 (511)
                       ..+|+|+|+++.+++.|++|+..+|    ..++++++++|+.+...+ .+||+|++++++..          +...+.+
T Consensus       262 ~~~~V~GvDid~~al~~Ar~Na~~~g----l~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~  336 (393)
T 3k0b_A          262 QPLNIIGGDIDARLIEIAKQNAVEAG----LGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGI  336 (393)
T ss_dssp             CCCCEEEEESCHHHHHHHHHHHHHTT----CTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEECCHHHHHHHHHHHHHcC----CCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHH
Confidence             1569999999999999999999876    344699999999875443 58999999999731          2234445


Q ss_pred             hccc--CcEEEEEEcc
Q psy7829         227 QLKK--GGRILAPIGP  240 (511)
Q Consensus       227 ~Lkp--gG~l~~~~~~  240 (511)
                      .||+  ||.+++....
T Consensus       337 ~lk~~~g~~~~iit~~  352 (393)
T 3k0b_A          337 VYKRMPTWSVYVLTSY  352 (393)
T ss_dssp             HHHTCTTCEEEEEECC
T ss_pred             HHhcCCCCEEEEEECC
Confidence            5555  9998886653

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.12  E-value=1.4e-10  Score=106.96  Aligned_cols=94  Identities=27%  Similarity=0.414  Sum_probs=76.8

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC--CCCCCCCcc
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE--GYLPEAPYD  209 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD  209 (511)
                      .++.+|||+|||+|..+..+++. +  .+++++|+++.+++.++++.            .+++.+|+..  ...+.++||
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~-~--~~~~~~D~~~~~~~~~~~~~------------~~~~~~d~~~~~~~~~~~~fD   95 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN-G--TRVSGIEAFPEAAEQAKEKL------------DHVVLGDIETMDMPYEEEQFD   95 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT-T--CEEEEEESSHHHHHHHHTTS------------SEEEESCTTTCCCCSCTTCEE
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc-C--CeEEEEeCCHHHHHHHHHhC------------CcEEEcchhhcCCCCCCCccC
Confidence            57889999999999999999987 3  68999999999999887652            3678888875  222347899


Q ss_pred             EEEecCCCCch------HHHHHhhcccCcEEEEEEcc
Q psy7829         210 VIYYGGCVSEV------PSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       210 ~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~~~  240 (511)
                      +|++..+++++      .+++.+.|||||.+++.+..
T Consensus        96 ~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  132 (230)
T 3cc8_A           96 CVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPN  132 (230)
T ss_dssp             EEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred             EEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            99999887654      37788999999999997653

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.12  E-value=1.6e-11  Score=113.53  Aligned_cols=111  Identities=20%  Similarity=0.201  Sum_probs=70.9

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEE-ccCC
Q psy7829         121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE-ADAR  199 (511)
Q Consensus       121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~-~d~~  199 (511)
                      ..+++.+. ...++.+|||||||+|.++..+++..  ..+|+|+|+|+.|++.++++..+...  ....++.+.. .|+.
T Consensus        26 ~~~L~~~~-~~~~g~~VLDiGcGtG~~t~~la~~g--~~~V~gvDis~~ml~~a~~~~~~~~~--~~~~~~~~~~~~~~~  100 (232)
T 3opn_A           26 EKALKEFH-LEINGKTCLDIGSSTGGFTDVMLQNG--AKLVYALDVGTNQLAWKIRSDERVVV--MEQFNFRNAVLADFE  100 (232)
T ss_dssp             HHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHTT--CSEEEEECSSCCCCCHHHHTCTTEEE--ECSCCGGGCCGGGCC
T ss_pred             HHHHHHcC-CCCCCCEEEEEccCCCHHHHHHHhcC--CCEEEEEcCCHHHHHHHHHhCccccc--cccceEEEeCHhHcC
Confidence            34455543 12357799999999999999999873  34899999999999998775433110  0011232222 2222


Q ss_pred             CCCCCCCCccEEEecCCCCchHHHHHhhcccCcEEEEEE
Q psy7829         200 EGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       200 ~~~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~l~~~~  238 (511)
                      ...+....||+++++.  ..++.++.++|||||.+++.+
T Consensus       101 ~~~~d~~~~D~v~~~l--~~~l~~i~rvLkpgG~lv~~~  137 (232)
T 3opn_A          101 QGRPSFTSIDVSFISL--DLILPPLYEILEKNGEVAALI  137 (232)
T ss_dssp             SCCCSEEEECCSSSCG--GGTHHHHHHHSCTTCEEEEEE
T ss_pred             cCCCCEEEEEEEhhhH--HHHHHHHHHhccCCCEEEEEE
Confidence            2111223455554432  566799999999999999854

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.12  E-value=1.6e-10  Score=107.81  Aligned_cols=117  Identities=25%  Similarity=0.292  Sum_probs=83.4

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCc--cHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGS--GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA  196 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~--G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  196 (511)
                      +..+++..|.. -....+|||||||+  +..+..+++...|.++|+++|.|+.|++.|++++...     ...+++|+++
T Consensus        65 fl~rav~~l~~-~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~-----~~~~~~~v~a  138 (277)
T 3giw_A           65 WMNRAVAHLAK-EAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAST-----PEGRTAYVEA  138 (277)
T ss_dssp             HHHHHHHHHHH-TSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCC-----SSSEEEEEEC
T ss_pred             HHHHHHHHhcc-ccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccC-----CCCcEEEEEe
Confidence            44455555541 12336899999997  4445556665558899999999999999999998653     2347999999


Q ss_pred             cCCCCC---C-C--CCCcc-----EEEecCCCCchH---------HHHHhhcccCcEEEEEEccC
Q psy7829         197 DAREGY---L-P--EAPYD-----VIYYGGCVSEVP---------SRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       197 d~~~~~---~-~--~~~fD-----~I~~~~~~~~~~---------~~~~~~LkpgG~l~~~~~~~  241 (511)
                      |+.+..   . +  .+.||     .|+++..+|++.         +++.+.|+|||+|++.....
T Consensus       139 D~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~  203 (277)
T 3giw_A          139 DMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTA  203 (277)
T ss_dssp             CTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred             cccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccC
Confidence            997631   0 0  13455     588888887653         56788899999999976543

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.11  E-value=6e-11  Score=115.87  Aligned_cols=92  Identities=18%  Similarity=0.340  Sum_probs=72.4

Q ss_pred             CCCCCEEEEEcCC------ccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCC
Q psy7829         131 LVDGAKVLDLGSG------SGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLP  204 (511)
Q Consensus       131 ~~~~~~vLDiG~G------~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  204 (511)
                      ..++.+|||||||      +|..+..+++.+.++++|+|+|+|+.+.        .      ..++++|+++|+.+....
T Consensus       214 ~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~------~~~rI~fv~GDa~dlpf~  279 (419)
T 3sso_A          214 RNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------V------DELRIRTIQGDQNDAEFL  279 (419)
T ss_dssp             TTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------G------CBTTEEEEECCTTCHHHH
T ss_pred             cCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------h------cCCCcEEEEecccccchh
Confidence            3467899999999      7788888887765789999999999972        1      235899999999763222


Q ss_pred             ------CCCccEEEecCCCCch------HHHHHhhcccCcEEEEE
Q psy7829         205 ------EAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       205 ------~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~  237 (511)
                            .++||+|+++.. +..      ++++++.|||||++++.
T Consensus       280 ~~l~~~d~sFDlVisdgs-H~~~d~~~aL~el~rvLKPGGvlVi~  323 (419)
T 3sso_A          280 DRIARRYGPFDIVIDDGS-HINAHVRTSFAALFPHVRPGGLYVIE  323 (419)
T ss_dssp             HHHHHHHCCEEEEEECSC-CCHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             hhhhcccCCccEEEECCc-ccchhHHHHHHHHHHhcCCCeEEEEE
Confidence                  478999999764 332      47889999999999985

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.11  E-value=1.1e-10  Score=109.88  Aligned_cols=102  Identities=9%  Similarity=-0.011  Sum_probs=81.2

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEE
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVI  211 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I  211 (511)
                      ..+.+|||||||+|..+..+++.  + .+|+++|+++.+++.|++++..... .+..++++++.+|+.+..   ++||+|
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~--~-~~v~~veid~~~i~~ar~~~~~~~~-~~~~~rv~~~~~D~~~~~---~~fD~I  143 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY--D-THIDFVQADEKILDSFISFFPHFHE-VKNNKNFTHAKQLLDLDI---KKYDLI  143 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS--S-CEEEEECSCHHHHGGGTTTSTTHHH-HHTCTTEEEESSGGGSCC---CCEEEE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC--C-CEEEEEECCHHHHHHHHHHHHhhcc-ccCCCeEEEEechHHHHH---hhCCEE
Confidence            35679999999999999999887  3 7899999999999999987643100 012468999999987644   789999


Q ss_pred             EecCCCCc-hHHHHHhhcccCcEEEEEEcc
Q psy7829         212 YYGGCVSE-VPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       212 ~~~~~~~~-~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      +++..-+. +.+.+.+.|||||.+++..+.
T Consensus       144 i~d~~dp~~~~~~~~~~L~pgG~lv~~~~~  173 (262)
T 2cmg_A          144 FCLQEPDIHRIDGLKRMLKEDGVFISVAKH  173 (262)
T ss_dssp             EESSCCCHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             EECCCChHHHHHHHHHhcCCCcEEEEEcCC
Confidence            99865433 468999999999999986543

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.11  E-value=4.1e-10  Score=113.33  Aligned_cols=111  Identities=24%  Similarity=0.254  Sum_probs=85.5

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      ....+.+.+.+ +.++.+|||+|||+|.++..+++..   .+|+++|+++.+++.|++|+..++     .+ ++|+++|+
T Consensus       277 ~~e~l~~~~~~-~~~~~~VLDlgcG~G~~sl~la~~~---~~V~gvD~s~~ai~~A~~n~~~ng-----l~-v~~~~~d~  346 (425)
T 2jjq_A          277 QAVNLVRKVSE-LVEGEKILDMYSGVGTFGIYLAKRG---FNVKGFDSNEFAIEMARRNVEINN-----VD-AEFEVASD  346 (425)
T ss_dssp             HHHHHHHHHHH-HCCSSEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHT-----CC-EEEEECCT
T ss_pred             HHHHHHHHhhc-cCCCCEEEEeeccchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcC-----Cc-EEEEECCh
Confidence            34444444433 5678899999999999999999863   479999999999999999998864     34 99999999


Q ss_pred             CCCCCCCCCccEEEecCCCCchH---HHHHhhcccCcEEEEEEccC
Q psy7829         199 REGYLPEAPYDVIYYGGCVSEVP---SRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       199 ~~~~~~~~~fD~I~~~~~~~~~~---~~~~~~LkpgG~l~~~~~~~  241 (511)
                      .+...  .+||+|+++++.....   .+....|+|+|.+++++.+.
T Consensus       347 ~~~~~--~~fD~Vv~dPPr~g~~~~~~~~l~~l~p~givyvsc~p~  390 (425)
T 2jjq_A          347 REVSV--KGFDTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPE  390 (425)
T ss_dssp             TTCCC--TTCSEEEECCCTTCSCHHHHHHHHHHCCSEEEEEESCHH
T ss_pred             HHcCc--cCCCEEEEcCCccchHHHHHHHHHhcCCCcEEEEECChH
Confidence            87543  2799999998864322   23334589999999987543

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.11  E-value=1.2e-10  Score=114.84  Aligned_cols=97  Identities=18%  Similarity=0.183  Sum_probs=76.0

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      +.++.+|||||||+|..+..+++.+ +..+++++|+ +.++.  ++++...+    ..++++++.+|+.+..+   +||+
T Consensus       182 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~--~~~~~~~~----~~~~v~~~~~d~~~~~p---~~D~  250 (348)
T 3lst_A          182 FPATGTVADVGGGRGGFLLTVLREH-PGLQGVLLDR-AEVVA--RHRLDAPD----VAGRWKVVEGDFLREVP---HADV  250 (348)
T ss_dssp             CCSSEEEEEETCTTSHHHHHHHHHC-TTEEEEEEEC-HHHHT--TCCCCCGG----GTTSEEEEECCTTTCCC---CCSE
T ss_pred             ccCCceEEEECCccCHHHHHHHHHC-CCCEEEEecC-HHHhh--cccccccC----CCCCeEEEecCCCCCCC---CCcE
Confidence            5678899999999999999999987 7889999999 45544  33333222    24579999999974332   7999


Q ss_pred             EEecCCCCch--------HHHHHhhcccCcEEEEEE
Q psy7829         211 IYYGGCVSEV--------PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       211 I~~~~~~~~~--------~~~~~~~LkpgG~l~~~~  238 (511)
                      |++...++++        ++++++.|||||++++..
T Consensus       251 v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e  286 (348)
T 3lst_A          251 HVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVID  286 (348)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEE
T ss_pred             EEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            9999888643        477899999999999853

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.11  E-value=1.1e-10  Score=111.46  Aligned_cols=106  Identities=21%  Similarity=0.180  Sum_probs=82.9

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCccE
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYDV  210 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~  210 (511)
                      .++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.|++++...+.+ +..++++++.+|+.+... ..++||+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~-~~~~~v~~~~~D~~~~l~~~~~~fD~  154 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCG-YEDKRVNVFIEDASKFLENVTNTYDV  154 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGG-GGSTTEEEEESCHHHHHHHCCSCEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccc-cCCCcEEEEECChHHHHHhCCCCceE
Confidence            467899999999999999999864 5679999999999999999998653210 124689999999864221 2478999


Q ss_pred             EEecCCCC----------chHHHHHhhcccCcEEEEEEc
Q psy7829         211 IYYGGCVS----------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       211 I~~~~~~~----------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      |+++...+          .+.+.+.+.|||||.+++...
T Consensus       155 Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  193 (283)
T 2i7c_A          155 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE  193 (283)
T ss_dssp             EEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence            99975432          345789999999999998654

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.11  E-value=1.1e-10  Score=117.17  Aligned_cols=103  Identities=22%  Similarity=0.253  Sum_probs=83.3

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC----CCC
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL----PEA  206 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~  206 (511)
                      .+++.+|||+|||+|.++..+++.  ...+|+++|+++.+++.|++|+..++    ..++++++++|+.+...    ..+
T Consensus       215 ~~~~~~VLDl~~G~G~~~~~la~~--g~~~v~~vD~s~~~l~~a~~n~~~n~----~~~~v~~~~~d~~~~~~~~~~~~~  288 (396)
T 2as0_A          215 VQPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNG----VEDRMKFIVGSAFEEMEKLQKKGE  288 (396)
T ss_dssp             CCTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTT----CGGGEEEEESCHHHHHHHHHHTTC
T ss_pred             hhCCCeEEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcC----CCccceEEECCHHHHHHHHHhhCC
Confidence            347899999999999999999986  24589999999999999999999875    22389999999865322    146


Q ss_pred             CccEEEecCCCC---------------chHHHHHhhcccCcEEEEEEc
Q psy7829         207 PYDVIYYGGCVS---------------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       207 ~fD~I~~~~~~~---------------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      +||+|+++++..               .+...+.+.|+|||.+++...
T Consensus       289 ~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  336 (396)
T 2as0_A          289 KFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC  336 (396)
T ss_dssp             CEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            899999998762               234678899999999988654

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.11  E-value=3.9e-10  Score=110.95  Aligned_cols=101  Identities=17%  Similarity=0.176  Sum_probs=83.2

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCC----ceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCC
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPT----GKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAP  207 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~----~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  207 (511)
                      .++.+|||+|||+|.++..+++.....    .+++|+|+++.+++.|+.++...+     . ++.++++|...... .+.
T Consensus       129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g-----~-~~~i~~~D~l~~~~-~~~  201 (344)
T 2f8l_A          129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-----Q-KMTLLHQDGLANLL-VDP  201 (344)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-----C-CCEEEESCTTSCCC-CCC
T ss_pred             CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC-----C-CceEEECCCCCccc-cCC
Confidence            467899999999999999999887322    789999999999999999988754     2 68999999876443 478


Q ss_pred             ccEEEecCCCCc------------------------hHHHHHhhcccCcEEEEEEc
Q psy7829         208 YDVIYYGGCVSE------------------------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       208 fD~I~~~~~~~~------------------------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      ||+|++++++..                        +...+.+.|||||++++.+.
T Consensus       202 fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p  257 (344)
T 2f8l_A          202 VDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP  257 (344)
T ss_dssp             EEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence            999999998532                        35778899999999998763

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.10  E-value=3.8e-10  Score=106.32  Aligned_cols=130  Identities=19%  Similarity=0.233  Sum_probs=95.4

Q ss_pred             CCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc----cccccccccc
Q psy7829         353 GPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI----STNHIDLIAN  428 (511)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~----~~~~v~~i~~  428 (511)
                      .+..+..+..++..  +.+.++.+|||+|||+|.++..+++.++|.++|+++|+++++++.+++++    +..+++++.+
T Consensus        78 ~~~~~~~~~~~~~~--~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~  155 (258)
T 2pwy_A           78 TPTYPKDASAMVTL--LDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLG  155 (258)
T ss_dssp             CCCCHHHHHHHHHH--TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEES
T ss_pred             ccccchHHHHHHHH--cCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence            34567778788877  78889999999999999999999998767799999999999998888775    4457888888


Q ss_pred             ccccc-cc-ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCC
Q psy7829         429 ETIEI-IP-HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIST  494 (511)
Q Consensus       429 d~~~~-l~-~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~  494 (511)
                      |..+. ++ ..+|.++.+         +. ....+...+.+.++|+|.++.+   ..-+....+.+.+.|+
T Consensus       156 d~~~~~~~~~~~D~v~~~---------~~-~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf  216 (258)
T 2pwy_A          156 KLEEAELEEAAYDGVALD---------LM-EPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPF  216 (258)
T ss_dssp             CGGGCCCCTTCEEEEEEE---------SS-CGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTE
T ss_pred             chhhcCCCCCCcCEEEEC---------Cc-CHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC
Confidence            76554 22 234544432         22 2335567788899999998877   3344455555655555

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.10  E-value=1.7e-10  Score=109.08  Aligned_cols=95  Identities=19%  Similarity=0.182  Sum_probs=69.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEE-EccCCCCC---CCCCCc
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIV-EADAREGY---LPEAPY  208 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~-~~d~~~~~---~~~~~f  208 (511)
                      ++.+|||+|||+|.++..+++..  ..+|+|+|+++.|++.+.++-          +++... ..|+....   .+..+|
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~g--a~~V~aVDvs~~mL~~a~r~~----------~rv~~~~~~ni~~l~~~~l~~~~f  152 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQNG--AKLVYAVDVGTNQLVWKLRQD----------DRVRSMEQYNFRYAEPVDFTEGLP  152 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT--CSEEEEECSSSSCSCHHHHTC----------TTEEEECSCCGGGCCGGGCTTCCC
T ss_pred             cccEEEecCCCccHHHHHHHhCC--CCEEEEEECCHHHHHHHHHhC----------cccceecccCceecchhhCCCCCC
Confidence            57899999999999999998873  468999999999998854431          123222 22332111   122459


Q ss_pred             cEEEecCCCCc---hHHHHHhhcccCcEEEEEEc
Q psy7829         209 DVIYYGGCVSE---VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       209 D~I~~~~~~~~---~~~~~~~~LkpgG~l~~~~~  239 (511)
                      |+|+++..+..   ++.++.++|||||.+++.+.
T Consensus       153 D~v~~d~sf~sl~~vL~e~~rvLkpGG~lv~lvk  186 (291)
T 3hp7_A          153 SFASIDVSFISLNLILPALAKILVDGGQVVALVK  186 (291)
T ss_dssp             SEEEECCSSSCGGGTHHHHHHHSCTTCEEEEEEC
T ss_pred             CEEEEEeeHhhHHHHHHHHHHHcCcCCEEEEEEC
Confidence            99999887754   45899999999999999654

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.09  E-value=3.7e-10  Score=101.62  Aligned_cols=95  Identities=26%  Similarity=0.305  Sum_probs=72.9

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCC--------ceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEE-EccCCCC
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPT--------GKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIV-EADAREG  201 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~--------~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~-~~d~~~~  201 (511)
                      ++++.+|||+|||+|.++..+++..++.        ++|+++|+++..                ...+++++ .+|+...
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----------------~~~~~~~~~~~d~~~~   83 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----------------PLEGATFLCPADVTDP   83 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----------------CCTTCEEECSCCTTSH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----------------cCCCCeEEEeccCCCH
Confidence            5789999999999999999999997543        789999999841                12468888 8887642


Q ss_pred             C--------CCCCCccEEEecCCCC-----------------chHHHHHhhcccCcEEEEEEccC
Q psy7829         202 Y--------LPEAPYDVIYYGGCVS-----------------EVPSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       202 ~--------~~~~~fD~I~~~~~~~-----------------~~~~~~~~~LkpgG~l~~~~~~~  241 (511)
                      .        .+.++||+|+++.+++                 .+.+++.+.|||||.+++.+...
T Consensus        84 ~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  148 (196)
T 2nyu_A           84 RTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG  148 (196)
T ss_dssp             HHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             HHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence            1        1235799999976543                 23467889999999999976543

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.09  E-value=1.3e-09  Score=107.94  Aligned_cols=119  Identities=11%  Similarity=-0.018  Sum_probs=90.9

Q ss_pred             hhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCC-------------------------------------C
Q psy7829         116 APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGP-------------------------------------T  158 (511)
Q Consensus       116 ~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~-------------------------------------~  158 (511)
                      .+.+.+.++.+..  ..++..+||.+||+|.+.+.++.....                                     .
T Consensus       179 ~e~LAaall~l~~--~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  256 (384)
T 3ldg_A          179 KENMAAAIILLSN--WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQ  256 (384)
T ss_dssp             CHHHHHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred             cHHHHHHHHHHhC--CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCC
Confidence            4556666666554  678899999999999999988876421                                     1


Q ss_pred             ceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCCc----------hHHHHHhhc
Q psy7829         159 GKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSE----------VPSRVLNQL  228 (511)
Q Consensus       159 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~----------~~~~~~~~L  228 (511)
                      .+++|+|+++.+++.|++|+..+|    ..+++++.++|+.+...+ .+||+|++|+++..          +...+.+.|
T Consensus       257 ~~v~GvDid~~al~~Ar~Na~~~g----l~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~l  331 (384)
T 3ldg_A          257 LDISGFDFDGRMVEIARKNAREVG----LEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETF  331 (384)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcC----CCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHH
Confidence            569999999999999999999876    345699999999875443 58999999999731          224455566


Q ss_pred             cc--CcEEEEEEccC
Q psy7829         229 KK--GGRILAPIGPM  241 (511)
Q Consensus       229 kp--gG~l~~~~~~~  241 (511)
                      |+  ||.+++.+...
T Consensus       332 k~~~g~~~~iit~~~  346 (384)
T 3ldg_A          332 APLKTWSQFILTNDT  346 (384)
T ss_dssp             TTCTTSEEEEEESCT
T ss_pred             hhCCCcEEEEEECCH
Confidence            65  99998866543

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.09  E-value=6.6e-10  Score=110.52  Aligned_cols=118  Identities=14%  Similarity=-0.007  Sum_probs=89.4

Q ss_pred             hhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhC-------------------------------------CC
Q psy7829         116 APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVG-------------------------------------PT  158 (511)
Q Consensus       116 ~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~-------------------------------------~~  158 (511)
                      .+.+.+.++....  ..++.+|||.+||+|.+++.++....                                     +.
T Consensus       180 ~e~lAa~ll~~~~--~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  257 (385)
T 3ldu_A          180 RETLAAGLIYLTP--WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESK  257 (385)
T ss_dssp             CHHHHHHHHHTSC--CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCC
T ss_pred             cHHHHHHHHHhhC--CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCC
Confidence            4456666665554  66788999999999999999887641                                     12


Q ss_pred             ceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCCc----------hHHHHHhhc
Q psy7829         159 GKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSE----------VPSRVLNQL  228 (511)
Q Consensus       159 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~----------~~~~~~~~L  228 (511)
                      .+|+|+|+++.+++.|++|+..+|    ..++++|.++|+.+...+ .+||+|++++++..          +...+.+.|
T Consensus       258 ~~V~GvDid~~ai~~Ar~Na~~~g----l~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~l  332 (385)
T 3ldu_A          258 FKIYGYDIDEESIDIARENAEIAG----VDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAF  332 (385)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHHT----CGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcC----CCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHH
Confidence            579999999999999999999876    234799999999875443 68999999999842          124455556


Q ss_pred             cc--CcEEEEEEcc
Q psy7829         229 KK--GGRILAPIGP  240 (511)
Q Consensus       229 kp--gG~l~~~~~~  240 (511)
                      |+  |+.+++.+..
T Consensus       333 k~~~g~~~~iit~~  346 (385)
T 3ldu_A          333 RKLKNWSYYLITSY  346 (385)
T ss_dssp             HTSBSCEEEEEESC
T ss_pred             hhCCCCEEEEEECC
Confidence            55  8888886653

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.09  E-value=2.2e-10  Score=104.59  Aligned_cols=99  Identities=17%  Similarity=0.135  Sum_probs=83.6

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCcc
Q psy7829         130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYD  209 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  209 (511)
                      .+.+..+|||||||+|-++..++... +..+++++|+++.+++.+++++..+|.      +.++.+.|.....++ ++||
T Consensus       129 ~i~~p~~VLDLGCG~GpLAl~~~~~~-p~a~y~a~DId~~~le~a~~~l~~~g~------~~~~~v~D~~~~~p~-~~~D  200 (281)
T 3lcv_B          129 HLPRPNTLRDLACGLNPLAAPWMGLP-AETVYIASDIDARLVGFVDEALTRLNV------PHRTNVADLLEDRLD-EPAD  200 (281)
T ss_dssp             GSCCCSEEEETTCTTGGGCCTTTTCC-TTCEEEEEESBHHHHHHHHHHHHHTTC------CEEEEECCTTTSCCC-SCCS
T ss_pred             ccCCCceeeeeccCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhcCC------CceEEEeeecccCCC-CCcc
Confidence            45567899999999999999998865 789999999999999999999988652      488999998876544 7899


Q ss_pred             EEEecCCCCchH-------HHHHhhcccCcEEEE
Q psy7829         210 VIYYGGCVSEVP-------SRVLNQLKKGGRILA  236 (511)
Q Consensus       210 ~I~~~~~~~~~~-------~~~~~~LkpgG~l~~  236 (511)
                      ++++.-.++++.       -++.+.|+|+|.++-
T Consensus       201 vaL~lkti~~Le~q~kg~g~~ll~aL~~~~vvVS  234 (281)
T 3lcv_B          201 VTLLLKTLPCLETQQRGSGWEVIDIVNSPNIVVT  234 (281)
T ss_dssp             EEEETTCHHHHHHHSTTHHHHHHHHSSCSEEEEE
T ss_pred             hHHHHHHHHHhhhhhhHHHHHHHHHhCCCCEEEe
Confidence            999998887664       368899999988763

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.08  E-value=5.3e-10  Score=105.54  Aligned_cols=100  Identities=19%  Similarity=0.164  Sum_probs=74.7

Q ss_pred             cCCCCCCEEEEEeccccHHH-HHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccccccccccchhhhhc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLA-TLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEIIPHILDLCYLN  444 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~-~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~l~~~~d~i~~~  444 (511)
                      +.++++++|||||||+|.++ +.+|+..  +++|+++|+++++++.|++++.   ..+++++++|+.+..+..||.++..
T Consensus       118 a~l~~g~rVLDIGcG~G~~ta~~lA~~~--ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~  195 (298)
T 3fpf_A          118 GRFRRGERAVFIGGGPLPLTGILLSHVY--GMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVA  195 (298)
T ss_dssp             TTCCTTCEEEEECCCSSCHHHHHHHHTT--CCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEEC
T ss_pred             cCCCCcCEEEEECCCccHHHHHHHHHcc--CCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEEC
Confidence            78899999999999999766 5555443  4899999999999998887753   4679999998877544456655432


Q ss_pred             ccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         445 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       445 l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..        ......+...+.+.|+|||+++..
T Consensus       196 a~--------~~d~~~~l~el~r~LkPGG~Lvv~  221 (298)
T 3fpf_A          196 AL--------AEPKRRVFRNIHRYVDTETRIIYR  221 (298)
T ss_dssp             TT--------CSCHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CC--------ccCHHHHHHHHHHHcCCCcEEEEE
Confidence            11        112335677888999999999866

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.08  E-value=1.8e-09  Score=97.76  Aligned_cols=126  Identities=16%  Similarity=0.212  Sum_probs=87.4

Q ss_pred             CCCHHHH-HHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---ccc-ccccccc
Q psy7829         354 PSSERSI-AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STN-HIDLIAN  428 (511)
Q Consensus       354 ~~~~~~~-~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~-~v~~i~~  428 (511)
                      +.+++.+ ..++..  +.+.++.+|||+|||+|.+++.+|+. +  .+|+++|+++++++.++++.   +.. +++++.+
T Consensus        37 ~~~~~~~~~~~l~~--l~~~~~~~vLDlGcG~G~~~~~la~~-~--~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~  111 (204)
T 3njr_A           37 QITKSPMRALTLAA--LAPRRGELLWDIGGGSGSVSVEWCLA-G--GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQG  111 (204)
T ss_dssp             CCCCHHHHHHHHHH--HCCCTTCEEEEETCTTCHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES
T ss_pred             CCCcHHHHHHHHHh--cCCCCCCEEEEecCCCCHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeC
Confidence            3444444 344444  78889999999999999999999987 3  89999999999988877765   445 7888888


Q ss_pred             cccccccc--cchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCC
Q psy7829         429 ETIEIIPH--ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIST  494 (511)
Q Consensus       429 d~~~~l~~--~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~  494 (511)
                      |..+.++.  .+|.++..         .+...- +...+.+.|+|+|.++..   ..-+....+.+++.+.
T Consensus       112 d~~~~~~~~~~~D~v~~~---------~~~~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~  172 (204)
T 3njr_A          112 TAPAALADLPLPEAVFIG---------GGGSQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGG  172 (204)
T ss_dssp             CTTGGGTTSCCCSEEEEC---------SCCCHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCS
T ss_pred             chhhhcccCCCCCEEEEC---------CcccHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCC
Confidence            87664332  23333221         111222 667778889999998876   4445555566666554

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.08  E-value=4.2e-10  Score=120.38  Aligned_cols=104  Identities=18%  Similarity=0.178  Sum_probs=84.5

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCccE
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYDV  210 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~  210 (511)
                      .++.+|||+|||+|.++..++...  ..+|+++|+|+.+++.|++|++.++.   ..++++++++|+.+... ..++||+
T Consensus       538 ~~g~~VLDlg~GtG~~sl~aa~~g--a~~V~aVD~s~~al~~a~~N~~~ngl---~~~~v~~i~~D~~~~l~~~~~~fD~  612 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSATVHAGLGG--ARSTTTVDMSRTYLEWAERNLRLNGL---TGRAHRLIQADCLAWLREANEQFDL  612 (703)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTC---CSTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             cCCCcEEEeeechhHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCC---CccceEEEecCHHHHHHhcCCCccE
Confidence            368899999999999999998853  35799999999999999999998762   22589999999875221 2368999


Q ss_pred             EEecCCCC-----------------chHHHHHhhcccCcEEEEEEcc
Q psy7829         211 IYYGGCVS-----------------EVPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       211 I~~~~~~~-----------------~~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      |+++++..                 .+...+.+.|+|||.|++++..
T Consensus       613 Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          613 IFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             EEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            99998751                 1246788999999999988765

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.07  E-value=2.4e-10  Score=113.53  Aligned_cols=97  Identities=21%  Similarity=0.186  Sum_probs=80.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC---CCC----
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY---LPE----  205 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~----  205 (511)
                      .+.+|||+|||+|.+++.+|+..   .+|+++|+++.+++.|++|++.++     .+|++|+.+|+.+..   ...    
T Consensus       213 ~~~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~~~ng-----~~~v~~~~~d~~~~~~~~~~~~~~~  284 (369)
T 3bt7_A          213 SKGDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAANH-----IDNVQIIRMAAEEFTQAMNGVREFN  284 (369)
T ss_dssp             CCSEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHHHHTT-----CCSEEEECCCSHHHHHHHSSCCCCT
T ss_pred             CCCEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcC-----CCceEEEECCHHHHHHHHhhccccc
Confidence            36789999999999999998853   479999999999999999999875     468999999986421   111    


Q ss_pred             ---------CCccEEEecCCCCchHHHHHhhcccCcEEEEE
Q psy7829         206 ---------APYDVIYYGGCVSEVPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       206 ---------~~fD~I~~~~~~~~~~~~~~~~LkpgG~l~~~  237 (511)
                               ..||+|+++++...+...+.+.|+++|++++.
T Consensus       285 ~l~~~~~~~~~fD~Vv~dPPr~g~~~~~~~~l~~~g~ivyv  325 (369)
T 3bt7_A          285 RLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPRILYI  325 (369)
T ss_dssp             TGGGSCGGGCCEEEEEECCCTTCCCHHHHHHHTTSSEEEEE
T ss_pred             cccccccccCCCCEEEECcCccccHHHHHHHHhCCCEEEEE
Confidence                     37999999998877778888889898888764

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.07  E-value=3.5e-10  Score=103.83  Aligned_cols=115  Identities=16%  Similarity=0.206  Sum_probs=75.0

Q ss_pred             CHHHHHHHHHHhh-cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc-ccccccccccccccc
Q psy7829         356 SERSIAHILDLCY-LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI-STNHIDLIANETIEI  433 (511)
Q Consensus       356 ~~~~~~~~~~~~~-~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~-~~~~v~~i~~d~~~~  433 (511)
                      ..+..+.++.... +.+++|.+|||+|||+|+.+..+|+.++++|+|+|+|+++.+++...+.. ...|+.++.+|+...
T Consensus        58 ~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~  137 (232)
T 3id6_C           58 RSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFP  137 (232)
T ss_dssp             TCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCG
T ss_pred             HHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccc
Confidence            3355666666522 45889999999999999999999999988899999999987754322111 125788888875432


Q ss_pred             -----ccccchhhhhcccCCcEEEEEcCCccHHHH-HHHHHhCCCcEEEEh
Q psy7829         434 -----IPHILDLCYLNLHRGAKVLEIGSGSGYLAT-LMAHLVGPTGHVTGL  478 (511)
Q Consensus       434 -----l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~-~l~~~l~~~g~v~~~  478 (511)
                           +...+|.++.+...        .....+.. .+.+.|+|+|+++..
T Consensus       138 ~~~~~~~~~~D~I~~d~a~--------~~~~~il~~~~~~~LkpGG~lvis  180 (232)
T 3id6_C          138 QSYKSVVENVDVLYVDIAQ--------PDQTDIAIYNAKFFLKVNGDMLLV  180 (232)
T ss_dssp             GGTTTTCCCEEEEEECCCC--------TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhhccccceEEEEecCCC--------hhHHHHHHHHHHHhCCCCeEEEEE
Confidence                 12345554443321        11111222 233489999998765

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.07  E-value=7.3e-10  Score=105.75  Aligned_cols=112  Identities=24%  Similarity=0.321  Sum_probs=85.0

Q ss_pred             CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc------ccccccccc
Q psy7829         355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS------TNHIDLIAN  428 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~------~~~v~~i~~  428 (511)
                      ..+..+..++..  +.+.++.+|||+|||+|.++..+++.++|.++|+++|+++++++.+++++.      ..+++++.+
T Consensus        83 ~~~~~~~~i~~~--~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~  160 (280)
T 1i9g_A           83 IYPKDAAQIVHE--GDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS  160 (280)
T ss_dssp             CCHHHHHHHHHH--TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECS
T ss_pred             ecHHHHHHHHHH--cCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEEC
Confidence            456777777776  788999999999999999999999987677999999999999988887763      457888888


Q ss_pred             cccccc--cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         429 ETIEII--PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       429 d~~~~l--~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      |..+..  +..+|.++.+..          .+-.+...+.+.|+|+|.++.+
T Consensus       161 d~~~~~~~~~~~D~v~~~~~----------~~~~~l~~~~~~L~pgG~l~~~  202 (280)
T 1i9g_A          161 DLADSELPDGSVDRAVLDML----------APWEVLDAVSRLLVAGGVLMVY  202 (280)
T ss_dssp             CGGGCCCCTTCEEEEEEESS----------CGGGGHHHHHHHEEEEEEEEEE
T ss_pred             chHhcCCCCCceeEEEECCc----------CHHHHHHHHHHhCCCCCEEEEE
Confidence            765532  223444443222          2335567788899999998876

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.06  E-value=4.1e-10  Score=108.31  Aligned_cols=105  Identities=16%  Similarity=0.210  Sum_probs=80.4

Q ss_pred             chhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEE
Q psy7829         115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIV  194 (511)
Q Consensus       115 ~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~  194 (511)
                      ..+.+...+++.+.  +.++.+|||+|||+|.++..+++..   .+|+++|+++.+++.+++++...+     .++++++
T Consensus        26 ~~~~i~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~~---~~v~~vDi~~~~~~~a~~~~~~~~-----~~~v~~~   95 (299)
T 2h1r_A           26 KNPGILDKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPLA---KKVITIDIDSRMISEVKKRCLYEG-----YNNLEVY   95 (299)
T ss_dssp             CCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTTS---SEEEEECSCHHHHHHHHHHHHHTT-----CCCEEC-
T ss_pred             cCHHHHHHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcC-----CCceEEE
Confidence            46778888888876  6788999999999999999998863   479999999999999999987643     4689999


Q ss_pred             EccCCCCCCCCCCccEEEecCCCCchHHHHHhhcccC
Q psy7829         195 EADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKG  231 (511)
Q Consensus       195 ~~d~~~~~~~~~~fD~I~~~~~~~~~~~~~~~~Lkpg  231 (511)
                      ++|+.....  .+||+|+++.+++.....+.++|+..
T Consensus        96 ~~D~~~~~~--~~~D~Vv~n~py~~~~~~~~~ll~~~  130 (299)
T 2h1r_A           96 EGDAIKTVF--PKFDVCTANIPYKISSPLIFKLISHR  130 (299)
T ss_dssp             ---CCSSCC--CCCSEEEEECCGGGHHHHHHHHHHCS
T ss_pred             ECchhhCCc--ccCCEEEEcCCcccccHHHHHHHhcC
Confidence            999876433  47999999988765554455555443

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.05  E-value=6.9e-10  Score=105.78  Aligned_cols=133  Identities=15%  Similarity=0.272  Sum_probs=95.3

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c-ccccccccc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T-NHIDLIANE  429 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~-~~v~~i~~d  429 (511)
                      +..+..+..++..  +.+.++.+|||+|||+|.+++.+++.++|.++|+++|+++++++.+++++.   . .+++++.+|
T Consensus        95 ~~~~~~~~~i~~~--~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  172 (277)
T 1o54_A           95 IVYPKDSSFIAMM--LDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRD  172 (277)
T ss_dssp             CCCHHHHHHHHHH--TTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCC
T ss_pred             ccCHHHHHHHHHH--hCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECC
Confidence            3456777777776  788899999999999999999999987677999999999999888877764   2 567888887


Q ss_pred             cccccc-ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCCCceE
Q psy7829         430 TIEIIP-HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHID  498 (511)
Q Consensus       430 ~~~~l~-~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~~~i~  498 (511)
                      ..+.++ ..+|.++.+..          .+-.+...+.+.|+|+|.++..   ..-+....+.+.+.|+..++
T Consensus       173 ~~~~~~~~~~D~V~~~~~----------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~~~  235 (277)
T 1o54_A          173 ISEGFDEKDVDALFLDVP----------DPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIE  235 (277)
T ss_dssp             GGGCCSCCSEEEEEECCS----------CGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEE
T ss_pred             HHHcccCCccCEEEECCc----------CHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCceeE
Confidence            665543 23555544322          1224457778889999998877   33444555556555553333

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.05  E-value=5.1e-09  Score=95.00  Aligned_cols=109  Identities=16%  Similarity=0.134  Sum_probs=80.9

Q ss_pred             hhHHHHHHHHHHhh-cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEE
Q psy7829         116 APNQIADAAENLKL-HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIV  194 (511)
Q Consensus       116 ~p~~~~~~~~~l~~-~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~  194 (511)
                      .+.+...++..+.. ...++.+|||+|||+|.++..+++..  ..+|+++|+++.+++.+++++..++     . +++++
T Consensus        31 ~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~-----~-~~~~~  102 (207)
T 1wy7_A           31 PGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLG--AKEVICVEVDKEAVDVLIENLGEFK-----G-KFKVF  102 (207)
T ss_dssp             CHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHTGGGT-----T-SEEEE
T ss_pred             chHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHcC-----C-CEEEE
Confidence            34455555554432 13478899999999999999999873  3479999999999999999988754     2 79999


Q ss_pred             EccCCCCCCCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEEE
Q psy7829         195 EADAREGYLPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       195 ~~d~~~~~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~~  238 (511)
                      ++|+.+. +  ++||+|+++.+++..        .+.+.+.+  | .+++..
T Consensus       103 ~~d~~~~-~--~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~-~~~~~~  148 (207)
T 1wy7_A          103 IGDVSEF-N--SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--D-VVYSIH  148 (207)
T ss_dssp             ESCGGGC-C--CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--S-EEEEEE
T ss_pred             ECchHHc-C--CCCCEEEEcCCCccccCCchHHHHHHHHHhc--C-cEEEEE
Confidence            9998763 2  489999999886432        35566666  4 444433

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.05  E-value=2.9e-09  Score=94.89  Aligned_cols=98  Identities=20%  Similarity=0.171  Sum_probs=77.8

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCC--CCCeEEEEccCCCC-------
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD--SGRVRIVEADAREG-------  201 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~--~~~v~~~~~d~~~~-------  201 (511)
                      +.+..+|||+||  |+.++.+|+.  ++++|+++|.+++..+.|+++++++|    .  .++|+++.+|+.+.       
T Consensus        28 l~~a~~VLEiGt--GySTl~lA~~--~~g~VvtvE~d~~~~~~ar~~l~~~g----~~~~~~I~~~~gda~~~~~wg~p~   99 (202)
T 3cvo_A           28 YEEAEVILEYGS--GGSTVVAAEL--PGKHVTSVESDRAWARMMKAWLAANP----PAEGTEVNIVWTDIGPTGDWGHPV   99 (202)
T ss_dssp             HHHCSEEEEESC--SHHHHHHHTS--TTCEEEEEESCHHHHHHHHHHHHHSC----CCTTCEEEEEECCCSSBCGGGCBS
T ss_pred             hhCCCEEEEECc--hHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHcC----CCCCCceEEEEeCchhhhcccccc
Confidence            346789999998  5888888884  36899999999999999999999875    3  56899999997542       


Q ss_pred             -------C----------CCCCCccEEEecCCCC-chHHHHHhhcccCcEEEE
Q psy7829         202 -------Y----------LPEAPYDVIYYGGCVS-EVPSRVLNQLKKGGRILA  236 (511)
Q Consensus       202 -------~----------~~~~~fD~I~~~~~~~-~~~~~~~~~LkpgG~l~~  236 (511)
                             +          ...++||+|++++... .....+.+.|+|||++++
T Consensus       100 ~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~~~~~~~~l~~l~~GG~Iv~  152 (202)
T 3cvo_A          100 SDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFRVGCALATAFSITRPVTLLF  152 (202)
T ss_dssp             SSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSHHHHHHHHHHHCSSCEEEEE
T ss_pred             cchhhhhHHHHhhhhhccccCCCCCEEEEeCCCchhHHHHHHHhcCCCeEEEE
Confidence                   1          1237899999998753 233457799999999976

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.04  E-value=2.6e-10  Score=104.71  Aligned_cols=99  Identities=8%  Similarity=0.118  Sum_probs=72.7

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c--ccccccccccccccc----ccchhhh
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T--NHIDLIANETIEIIP----HILDLCY  442 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~--~~v~~i~~d~~~~l~----~~~d~i~  442 (511)
                      +++.+|||||||+|+.++.+|+.++++++|+++|+++++++.+++++.   .  ++++++.+|+.+.++    ..||.++
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~  134 (221)
T 3dr5_A           55 NGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVF  134 (221)
T ss_dssp             TTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEE
T ss_pred             CCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEE
Confidence            345599999999999999999988667999999999999888877764   3  478999998766543    3455554


Q ss_pred             hcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       443 ~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .+....        ..-.+...+.+.|+|||.++.-
T Consensus       135 ~d~~~~--------~~~~~l~~~~~~LkpGG~lv~d  162 (221)
T 3dr5_A          135 GQVSPM--------DLKALVDAAWPLLRRGGALVLA  162 (221)
T ss_dssp             ECCCTT--------THHHHHHHHHHHEEEEEEEEET
T ss_pred             EcCcHH--------HHHHHHHHHHHHcCCCcEEEEe
Confidence            432111        1122456677889999988863

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.04  E-value=1.1e-09  Score=96.84  Aligned_cols=130  Identities=11%  Similarity=0.063  Sum_probs=85.4

Q ss_pred             CCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cc-ccccccc
Q psy7829         353 GPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TN-HIDLIAN  428 (511)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~-~v~~i~~  428 (511)
                      |..+++.+...+.. .+.+.++.+|||+|||+|.++..+++.. +..+|+++|+++++++.+++++.   .. ++ ++.+
T Consensus         6 g~~t~~~~~~~~~~-~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~   82 (178)
T 3hm2_A            6 GQLTKQHVRALAIS-ALAPKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQ   82 (178)
T ss_dssp             CCSHHHHHHHHHHH-HHCCCTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEEC
T ss_pred             CcccHHHHHHHHHH-HhcccCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEec
Confidence            44555655443322 3678899999999999999999999886 56899999999998888877654   33 56 6666


Q ss_pred             ccccccc---ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCC
Q psy7829         429 ETIEIIP---HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIST  494 (511)
Q Consensus       429 d~~~~l~---~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~  494 (511)
                      |..+.++   ..+|.++....         .....+...+.+.++|+|.++..   ..-.....+.++..+.
T Consensus        83 d~~~~~~~~~~~~D~i~~~~~---------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~  145 (178)
T 3hm2_A           83 GAPRAFDDVPDNPDVIFIGGG---------LTAPGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGG  145 (178)
T ss_dssp             CTTGGGGGCCSCCSEEEECC----------TTCTTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCC
T ss_pred             chHhhhhccCCCCCEEEECCc---------ccHHHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCC
Confidence            6544333   23444332211         11234667888889999998865   3334444455555443

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.04  E-value=9.9e-10  Score=108.38  Aligned_cols=98  Identities=21%  Similarity=0.278  Sum_probs=82.1

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      +.+..+|+|||||+|..+..+++++ |+.+++..|. |.+++.|++++...     ..++|+++.+|+.+.+.  ..+|+
T Consensus       177 ~~~~~~v~DvGgG~G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~~~-----~~~rv~~~~gD~~~~~~--~~~D~  247 (353)
T 4a6d_A          177 LSVFPLMCDLGGGAGALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFSFQ-----EEEQIDFQEGDFFKDPL--PEADL  247 (353)
T ss_dssp             GGGCSEEEEETCTTSHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSCC-------CCSEEEEESCTTTSCC--CCCSE
T ss_pred             cccCCeEEeeCCCCCHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhhhc-----ccCceeeecCccccCCC--CCceE
Confidence            4567799999999999999999997 8889999997 88999999987653     46799999999986543  35799


Q ss_pred             EEecCCCCc--------hHHHHHhhcccCcEEEEE
Q psy7829         211 IYYGGCVSE--------VPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       211 I~~~~~~~~--------~~~~~~~~LkpgG~l~~~  237 (511)
                      |++...++.        +++++++.|+|||++++.
T Consensus       248 ~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~  282 (353)
T 4a6d_A          248 YILARVLHDWADGKCSHLLERIYHTCKPGGGILVI  282 (353)
T ss_dssp             EEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             EEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence            999988864        347899999999999884

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.03  E-value=1.4e-09  Score=98.14  Aligned_cols=103  Identities=21%  Similarity=0.214  Sum_probs=74.2

Q ss_pred             HHHHHHHHHhh-cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc
Q psy7829         119 QIADAAENLKL-HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD  197 (511)
Q Consensus       119 ~~~~~~~~l~~-~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  197 (511)
                      +...++..+.. ...++.+|||+|||+|.++..+++.  +..+|+++|+++.+++.|++++.          +++++++|
T Consensus        36 ~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~----------~~~~~~~d  103 (200)
T 1ne2_A           36 TAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNCG----------GVNFMVAD  103 (200)
T ss_dssp             HHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHCT----------TSEEEECC
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHhcC----------CCEEEECc
Confidence            44444444431 2457889999999999999999886  24579999999999999998853          58999999


Q ss_pred             CCCCCCCCCCccEEEecCCCCchH--------HHHHhhcccCcEEEEEEc
Q psy7829         198 AREGYLPEAPYDVIYYGGCVSEVP--------SRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       198 ~~~~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~l~~~~~  239 (511)
                      +.+. +  ++||+|+++.++++..        +++.+.+   |.+++...
T Consensus       104 ~~~~-~--~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~---g~~~~~~~  147 (200)
T 1ne2_A          104 VSEI-S--GKYDTWIMNPPFGSVVKHSDRAFIDKAFETS---MWIYSIGN  147 (200)
T ss_dssp             GGGC-C--CCEEEEEECCCC-------CHHHHHHHHHHE---EEEEEEEE
T ss_pred             HHHC-C--CCeeEEEECCCchhccCchhHHHHHHHHHhc---CcEEEEEc
Confidence            8763 2  6899999999875542        4455555   55555443

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.03  E-value=4.3e-10  Score=107.04  Aligned_cols=125  Identities=16%  Similarity=0.223  Sum_probs=85.7

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc----ccccccccccccccc
Q psy7829         358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI----STNHIDLIANETIEI  433 (511)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~----~~~~v~~i~~d~~~~  433 (511)
                      ..+..++..  +.+.++.+|||+|||+|.++..+++.++|..+|+++|+++++++.+++++    +..+++++.+|..+.
T Consensus        97 ~~~~~~~~~--~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~  174 (275)
T 1yb2_A           97 IDASYIIMR--CGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF  174 (275)
T ss_dssp             -----------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC
T ss_pred             hhHHHHHHH--cCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhcc
Confidence            444455555  67889999999999999999999998656689999999999998888776    345788888886654


Q ss_pred             cc-ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCC
Q psy7829         434 IP-HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIST  494 (511)
Q Consensus       434 l~-~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~  494 (511)
                      ++ ..+|.++.+...          .-.+...+.+.++|+|.++..   ..-.+...+.+.+.|+
T Consensus       175 ~~~~~fD~Vi~~~~~----------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf  229 (275)
T 1yb2_A          175 ISDQMYDAVIADIPD----------PWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGM  229 (275)
T ss_dssp             CCSCCEEEEEECCSC----------GGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTE
T ss_pred             CcCCCccEEEEcCcC----------HHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCC
Confidence            33 245655543321          224457788889999998876   3344555556666665

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.02  E-value=2e-09  Score=97.47  Aligned_cols=93  Identities=12%  Similarity=-0.007  Sum_probs=78.1

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEE
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVI  211 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I  211 (511)
                      .++.+|||+|||+|-++..+.    +..+++++|+++.+++.+++++..++      .+..+..+|....+++ ++||+|
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g------~~~~~~v~D~~~~~~~-~~~Dvv  172 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKD------WDFTFALQDVLCAPPA-EAGDLA  172 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTT------CEEEEEECCTTTSCCC-CBCSEE
T ss_pred             CCCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcC------CCceEEEeecccCCCC-CCcchH
Confidence            567899999999999998877    56789999999999999999988753      4789999999876654 689999


Q ss_pred             EecCCCCchH-------HHHHhhcccCcEEE
Q psy7829         212 YYGGCVSEVP-------SRVLNQLKKGGRIL  235 (511)
Q Consensus       212 ~~~~~~~~~~-------~~~~~~LkpgG~l~  235 (511)
                      ++.-.++++.       .++.+.|+++|.++
T Consensus       173 Lllk~lh~LE~q~~~~~~~ll~aL~~~~vvV  203 (253)
T 3frh_A          173 LIFKLLPLLEREQAGSAMALLQSLNTPRMAV  203 (253)
T ss_dssp             EEESCHHHHHHHSTTHHHHHHHHCBCSEEEE
T ss_pred             HHHHHHHHhhhhchhhHHHHHHHhcCCCEEE
Confidence            9987776553       47888999997665

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.01  E-value=3.2e-10  Score=119.12  Aligned_cols=98  Identities=18%  Similarity=0.212  Sum_probs=80.2

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC--CCCCCCc
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG--YLPEAPY  208 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~f  208 (511)
                      +..+.+|||||||.|.++..||+..   +.|+|||.++.+++.|+.++.+.|     ..+++|.++++.+.  ....++|
T Consensus        64 ~~~~~~vLDvGCG~G~~~~~la~~g---a~V~giD~~~~~i~~a~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~~f  135 (569)
T 4azs_A           64 LGRPLNVLDLGCAQGFFSLSLASKG---ATIVGIDFQQENINVCRALAEENP-----DFAAEFRVGRIEEVIAALEEGEF  135 (569)
T ss_dssp             HTSCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHTST-----TSEEEEEECCHHHHHHHCCTTSC
T ss_pred             cCCCCeEEEECCCCcHHHHHHHhCC---CEEEEECCCHHHHHHHHHHHHhcC-----CCceEEEECCHHHHhhhccCCCc
Confidence            4567899999999999999999974   479999999999999999988753     34799999998753  1234789


Q ss_pred             cEEEecCCCCchH--------HHHHhhcccCcEEEE
Q psy7829         209 DVIYYGGCVSEVP--------SRVLNQLKKGGRILA  236 (511)
Q Consensus       209 D~I~~~~~~~~~~--------~~~~~~LkpgG~l~~  236 (511)
                      |+|++..+++|++        ..+.+.|+++|..++
T Consensus       136 D~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~  171 (569)
T 4azs_A          136 DLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVI  171 (569)
T ss_dssp             SEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEE
T ss_pred             cEEEECcchhcCCCHHHHHHHHHHHHHhccccceee
Confidence            9999999998875        356677888877665

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.01  E-value=1.8e-10  Score=108.44  Aligned_cols=101  Identities=16%  Similarity=0.005  Sum_probs=71.0

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEE--EccCCCCCCCCCC
Q psy7829         130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIV--EADAREGYLPEAP  207 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~--~~d~~~~~~~~~~  207 (511)
                      .++++.+|||+|||+|.++..+++.    ++|+|+|+++ ++..++++.....   ....++.++  ++|+....  .++
T Consensus        71 ~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~---~~~~~v~~~~~~~D~~~l~--~~~  140 (265)
T 2oxt_A           71 YVELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITE---SYGWNIVKFKSRVDIHTLP--VER  140 (265)
T ss_dssp             SCCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCC---BTTGGGEEEECSCCTTTSC--CCC
T ss_pred             CCCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhh---ccCCCeEEEecccCHhHCC--CCC
Confidence            3678999999999999999999886    4699999998 4322221100000   001268999  89987643  478


Q ss_pred             ccEEEecCCCC------------chHHHHHhhcccCc--EEEEEEcc
Q psy7829         208 YDVIYYGGCVS------------EVPSRVLNQLKKGG--RILAPIGP  240 (511)
Q Consensus       208 fD~I~~~~~~~------------~~~~~~~~~LkpgG--~l~~~~~~  240 (511)
                      ||+|+++.+..            .++..+.++|||||  .+++.+..
T Consensus       141 fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          141 TDVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             CcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence            99999986511            13466789999999  99886654

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.01  E-value=7.5e-10  Score=108.66  Aligned_cols=112  Identities=21%  Similarity=0.312  Sum_probs=84.3

Q ss_pred             CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc--------------c
Q psy7829         355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS--------------T  420 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~--------------~  420 (511)
                      ..+..++.++..  +.+.++.+|||+|||+|++++.+++.++++++|+++|+++++++.+++++.              .
T Consensus        89 ~~~~~~~~~l~~--l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~  166 (336)
T 2b25_A           89 TFPKDINMILSM--MDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWP  166 (336)
T ss_dssp             CCHHHHHHHHHH--HTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCC
T ss_pred             cCHHHHHHHHHh--cCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccC
Confidence            456777778877  688899999999999999999999988788999999999999998887765              2


Q ss_pred             cccccccccccccc----cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         421 NHIDLIANETIEII----PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       421 ~~v~~i~~d~~~~l----~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .+++++.+|..+..    +..+|.++.+..          .+-.+...+.+.|+|+|.++..
T Consensus       167 ~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~----------~~~~~l~~~~~~LkpgG~lv~~  218 (336)
T 2b25_A          167 DNVDFIHKDISGATEDIKSLTFDAVALDML----------NPHVTLPVFYPHLKHGGVCAVY  218 (336)
T ss_dssp             CCEEEEESCTTCCC-------EEEEEECSS----------STTTTHHHHGGGEEEEEEEEEE
T ss_pred             CceEEEECChHHcccccCCCCeeEEEECCC----------CHHHHHHHHHHhcCCCcEEEEE
Confidence            56888888765542    123454444322          1223456778889999998876

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.00  E-value=1.2e-09  Score=111.23  Aligned_cols=123  Identities=19%  Similarity=0.170  Sum_probs=93.2

Q ss_pred             CcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhC------------CCceEEEEeCCHHHHHHHHHHH
Q psy7829         111 AGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVG------------PTGKVIGVEHIPELIEASLRNI  178 (511)
Q Consensus       111 ~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~------------~~~~v~~iD~~~~~~~~a~~~~  178 (511)
                      |...+.+.+...+++.+.  ..++.+|||.|||+|.+...+++.+.            ...+++|+|+++.+++.|+.++
T Consensus       151 G~fyTP~~v~~~mv~~l~--~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl  228 (445)
T 2okc_A          151 GQYFTPRPLIQAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNL  228 (445)
T ss_dssp             GGGCCCHHHHHHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred             CcccCcHHHHHHHHHHhC--CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHH
Confidence            333444456667777775  56788999999999999998887641            1356999999999999999998


Q ss_pred             hccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCCc-----------------------hHHHHHhhcccCcEEE
Q psy7829         179 SKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSE-----------------------VPSRVLNQLKKGGRIL  235 (511)
Q Consensus       179 ~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~-----------------------~~~~~~~~LkpgG~l~  235 (511)
                      ...|.   ...++++.++|....... ..||+|++++|+..                       +.+.+.+.|||||+++
T Consensus       229 ~l~g~---~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a  304 (445)
T 2okc_A          229 YLHGI---GTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAA  304 (445)
T ss_dssp             HHTTC---CSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred             HHhCC---CcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEE
Confidence            77541   112678899998764433 48999999988732                       3478889999999998


Q ss_pred             EEEc
Q psy7829         236 APIG  239 (511)
Q Consensus       236 ~~~~  239 (511)
                      +.+.
T Consensus       305 ~V~p  308 (445)
T 2okc_A          305 VVLP  308 (445)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            8664

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.00  E-value=4.7e-10  Score=111.01  Aligned_cols=100  Identities=21%  Similarity=0.145  Sum_probs=82.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhcc---------------CCCcCCCCCeEEEEcc
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKG---------------NKDLLDSGRVRIVEAD  197 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---------------~~~~~~~~~v~~~~~d  197 (511)
                      ++.+|||+|||+|..++.+++.. +..+|+++|+++.+++.+++|++.+               +     ..+++++++|
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~-~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~g-----l~~i~v~~~D  120 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALET-PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKG-----EKTIVINHDD  120 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEES-----SSEEEEEESC
T ss_pred             CCCEEEECCCchhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccC-----CCceEEEcCc
Confidence            68899999999999999999986 4567999999999999999999987               4     2359999999


Q ss_pred             CCCCCC-CCCCccEEEecCCCC--chHHHHHhhcccCcEEEEEE
Q psy7829         198 AREGYL-PEAPYDVIYYGGCVS--EVPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       198 ~~~~~~-~~~~fD~I~~~~~~~--~~~~~~~~~LkpgG~l~~~~  238 (511)
                      +..... ....||+|++++...  .+.+.+.+.|||||.+++..
T Consensus       121 a~~~~~~~~~~fD~I~lDP~~~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          121 ANRLMAERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHHHHHHSTTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHhccCCCCEEEeCCCCCHHHHHHHHHHhcCCCCEEEEEe
Confidence            864321 125799999887543  46688899999999888764

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.00  E-value=6.8e-11  Score=119.76  Aligned_cols=97  Identities=15%  Similarity=0.164  Sum_probs=72.5

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCe-E-EEEccCCCCCCCCCCc
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRV-R-IVEADAREGYLPEAPY  208 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v-~-~~~~d~~~~~~~~~~f  208 (511)
                      +.++.+|||||||+|.++..+++..   .+|+|+|+|+.+++.|+++    +     .+.. . +...+.......+++|
T Consensus       105 ~~~~~~VLDiGcG~G~~~~~l~~~g---~~v~gvD~s~~~~~~a~~~----~-----~~~~~~~~~~~~~~~l~~~~~~f  172 (416)
T 4e2x_A          105 TGPDPFIVEIGCNDGIMLRTIQEAG---VRHLGFEPSSGVAAKAREK----G-----IRVRTDFFEKATADDVRRTEGPA  172 (416)
T ss_dssp             CSSSCEEEEETCTTTTTHHHHHHTT---CEEEEECCCHHHHHHHHTT----T-----CCEECSCCSHHHHHHHHHHHCCE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHcC---CcEEEECCCHHHHHHHHHc----C-----CCcceeeechhhHhhcccCCCCE
Confidence            4578899999999999999999863   3799999999999998876    1     1111 1 1112221111224789


Q ss_pred             cEEEecCCCCchH------HHHHhhcccCcEEEEEEc
Q psy7829         209 DVIYYGGCVSEVP------SRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       209 D~I~~~~~~~~~~------~~~~~~LkpgG~l~~~~~  239 (511)
                      |+|++..+++++.      +++.++|||||++++.+.
T Consensus       173 D~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  209 (416)
T 4e2x_A          173 NVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDP  209 (416)
T ss_dssp             EEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence            9999999987763      789999999999999754

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.00  E-value=4.8e-10  Score=102.06  Aligned_cols=102  Identities=20%  Similarity=0.246  Sum_probs=68.1

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-cccccccccccccc-----ccccchhhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNHIDLIANETIEI-----IPHILDLCY  442 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~~-----l~~~~d~i~  442 (511)
                      +.++++.+|||+|||+|..+..+++.++ +++|+|+|+++.+++...+... ..|+.++.+|....     .+..+|.++
T Consensus        53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~  131 (210)
T 1nt2_A           53 LKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIY  131 (210)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred             cCCCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEE
Confidence            4567899999999999999999999885 6899999999886543322221 34677776665432     123455555


Q ss_pred             hcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       443 ~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .++....       -...+...+++.|+|||.++..
T Consensus       132 ~~~~~~~-------~~~~~l~~~~r~LkpgG~l~i~  160 (210)
T 1nt2_A          132 QDIAQKN-------QIEILKANAEFFLKEKGEVVIM  160 (210)
T ss_dssp             ECCCSTT-------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EeccChh-------HHHHHHHHHHHHhCCCCEEEEE
Confidence            4421110       0111246778899999998775

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.99  E-value=1.4e-10  Score=109.73  Aligned_cols=100  Identities=15%  Similarity=0.010  Sum_probs=70.7

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEE--EccCCCCCCCCCCc
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIV--EADAREGYLPEAPY  208 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~--~~d~~~~~~~~~~f  208 (511)
                      ++++.+|||+|||+|.++..+++.    ++|+|+|+++ ++..++++.....   -...++.++  ++|+....  .++|
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~---~~~~~v~~~~~~~D~~~l~--~~~f  149 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVE---TFGWNLITFKSKVDVTKME--PFQA  149 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCC---CTTGGGEEEECSCCGGGCC--CCCC
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhh---hcCCCeEEEeccCcHhhCC--CCCc
Confidence            568899999999999999999886    4699999998 5333322110000   011278999  89987633  4789


Q ss_pred             cEEEecCCCC------------chHHHHHhhcccCc--EEEEEEcc
Q psy7829         209 DVIYYGGCVS------------EVPSRVLNQLKKGG--RILAPIGP  240 (511)
Q Consensus       209 D~I~~~~~~~------------~~~~~~~~~LkpgG--~l~~~~~~  240 (511)
                      |+|+++.+..            .++..+.++|||||  .+++.+..
T Consensus       150 D~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          150 DTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             CEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence            9999986511            13466789999999  99886543

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.99  E-value=7.3e-10  Score=103.53  Aligned_cols=103  Identities=11%  Similarity=0.123  Sum_probs=80.1

Q ss_pred             cchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEE
Q psy7829         114 MNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI  193 (511)
Q Consensus       114 ~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~  193 (511)
                      +..+.+...+++.+.  +.++.+|||||||+|.++..+++..   .+|+++|+++.+++.+++++..       .+++++
T Consensus        12 L~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avEid~~~~~~~~~~~~~-------~~~v~~   79 (255)
T 3tqs_A           12 LHDSFVLQKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC---DNLALVEIDRDLVAFLQKKYNQ-------QKNITI   79 (255)
T ss_dssp             ECCHHHHHHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS---SEEEEEECCHHHHHHHHHHHTT-------CTTEEE
T ss_pred             ccCHHHHHHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHhh-------CCCcEE
Confidence            446778888888886  7789999999999999999999874   5799999999999999999864       348999


Q ss_pred             EEccCCCCCCC----CCCccEEEecCCCCchHHHHHhhcc
Q psy7829         194 VEADAREGYLP----EAPYDVIYYGGCVSEVPSRVLNQLK  229 (511)
Q Consensus       194 ~~~d~~~~~~~----~~~fD~I~~~~~~~~~~~~~~~~Lk  229 (511)
                      +++|+.+...+    .++|| |++|.++.--..-+.++|.
T Consensus        80 i~~D~~~~~~~~~~~~~~~~-vv~NlPY~is~~il~~ll~  118 (255)
T 3tqs_A           80 YQNDALQFDFSSVKTDKPLR-VVGNLPYNISTPLLFHLFS  118 (255)
T ss_dssp             EESCTTTCCGGGSCCSSCEE-EEEECCHHHHHHHHHHHHH
T ss_pred             EEcchHhCCHHHhccCCCeE-EEecCCcccCHHHHHHHHh
Confidence            99999864321    25688 8888776433333445544

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.98  E-value=9.1e-10  Score=111.63  Aligned_cols=110  Identities=18%  Similarity=0.208  Sum_probs=85.3

Q ss_pred             cchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEE
Q psy7829         114 MNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI  193 (511)
Q Consensus       114 ~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~  193 (511)
                      .+.+.+...+++.+.  ..++.+|||+|||+|.++..+++..++..+++|+|+++.+++.|              .++++
T Consensus        22 ~TP~~l~~~~~~~~~--~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--------------~~~~~   85 (421)
T 2ih2_A           22 ETPPEVVDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------------PWAEG   85 (421)
T ss_dssp             CCCHHHHHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------------TTEEE
T ss_pred             eCCHHHHHHHHHhhc--cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC--------------CCCcE
Confidence            333456666777664  34567999999999999999998875567899999999988766              26899


Q ss_pred             EEccCCCCCCCCCCccEEEecCCCC-----------------------------------chHHHHHhhcccCcEEEEEE
Q psy7829         194 VEADAREGYLPEAPYDVIYYGGCVS-----------------------------------EVPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       194 ~~~d~~~~~~~~~~fD~I~~~~~~~-----------------------------------~~~~~~~~~LkpgG~l~~~~  238 (511)
                      +++|+.... ..+.||+|++++++.                                   .+.+.+.+.|+|||++++.+
T Consensus        86 ~~~D~~~~~-~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~  164 (421)
T 2ih2_A           86 ILADFLLWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV  164 (421)
T ss_dssp             EESCGGGCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeCChhhcC-ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEE
Confidence            999987643 346899999987762                                   12356789999999999876


Q ss_pred             cc
Q psy7829         239 GP  240 (511)
Q Consensus       239 ~~  240 (511)
                      ..
T Consensus       165 p~  166 (421)
T 2ih2_A          165 PA  166 (421)
T ss_dssp             EG
T ss_pred             Ch
Confidence            54

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.97  E-value=6.3e-10  Score=104.65  Aligned_cols=148  Identities=17%  Similarity=0.235  Sum_probs=101.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c-cc
Q psy7829         347 GSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T-NH  422 (511)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~-~~  422 (511)
                      ...+...|.++..+..++..  +.+.++.+|||||||+|..+..+++..+  .+|+++|+++.+++.++++..   . .+
T Consensus        12 ~~~~~~~~~~~~~~~~l~~~--~~~~~~~~VLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~   87 (256)
T 1nkv_A           12 SEHRIHNPFTEEKYATLGRV--LRMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGVSER   87 (256)
T ss_dssp             SSCSSSSSCCHHHHHHHHHH--TCCCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHHTTCTTT
T ss_pred             CCccccCCCCHHHHHHHHHh--cCCCCCCEEEEECCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCcc
Confidence            34455667888999888887  7888999999999999999999998874  799999999999988877654   2 36


Q ss_pred             cccccccccccc-cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh----------HHH----------
Q psy7829         423 IDLIANETIEII-PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL----------EHM----------  481 (511)
Q Consensus       423 v~~i~~d~~~~l-~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~----------~~m----------  481 (511)
                      ++++.+|..+.. +..+|.++....     +..-.+.......+.+.|+|+|.++..          ...          
T Consensus        88 v~~~~~d~~~~~~~~~fD~V~~~~~-----~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (256)
T 1nkv_A           88 VHFIHNDAAGYVANEKCDVAACVGA-----TWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTS  162 (256)
T ss_dssp             EEEEESCCTTCCCSSCEEEEEEESC-----GGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGG
T ss_pred             eEEEECChHhCCcCCCCCEEEECCC-----hHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhccccc
Confidence            888887765432 234554433110     000113445567777888999988764          111          


Q ss_pred             ----HHHHHHHHHhcCCCceEEEech
Q psy7829         482 ----MDIAIESIANISTNHIDLIANE  503 (511)
Q Consensus       482 ----l~~a~~~~~~~~~~~i~~i~~d  503 (511)
                          .+...+.+++.|+..++++..+
T Consensus       163 ~~~~~~~~~~~l~~aGf~~~~~~~~~  188 (256)
T 1nkv_A          163 DFLTLPGLVGAFDDLGYDVVEMVLAD  188 (256)
T ss_dssp             GSCCHHHHHHHHHTTTBCCCEEEECC
T ss_pred             ccCCHHHHHHHHHHCCCeeEEEEeCC
Confidence                1344566777787656655433

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.97  E-value=7.8e-10  Score=109.38  Aligned_cols=103  Identities=18%  Similarity=0.048  Sum_probs=83.2

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCC-eEEEEccCCCCCC--CCCCc
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGR-VRIVEADAREGYL--PEAPY  208 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~-v~~~~~d~~~~~~--~~~~f  208 (511)
                      .++.+|||++||+|.+++.++...+...+|+++|+++.+++.+++|++.++    ..++ ++++++|+.+...  ..+.|
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ng----l~~~~v~v~~~Da~~~l~~~~~~~f  126 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNN----IPEDRYEIHGMEANFFLRKEWGFGF  126 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTT----CCGGGEEEECSCHHHHHHSCCSSCE
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhC----CCCceEEEEeCCHHHHHHHhhCCCC
Confidence            468899999999999999999975223689999999999999999999976    2334 9999999864221  13579


Q ss_pred             cEEEecCCC--CchHHHHHhhcccCcEEEEEE
Q psy7829         209 DVIYYGGCV--SEVPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       209 D~I~~~~~~--~~~~~~~~~~LkpgG~l~~~~  238 (511)
                      |+|++++..  ..+.+.+.+.|+|||.|+++.
T Consensus       127 D~V~lDP~g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          127 DYVDLDPFGTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             EEEEECCSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cEEEECCCcCHHHHHHHHHHHhCCCCEEEEEe
Confidence            999999732  246688899999999998865

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.96  E-value=3.4e-10  Score=100.92  Aligned_cols=107  Identities=13%  Similarity=0.118  Sum_probs=70.2

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccccc---cccccchhhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIE---IIPHILDLCY  442 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~---~l~~~~d~i~  442 (511)
                      ..++++.+|||+|||+|.++..+++. +  ++|+|+|+++++++.++++..   ..++++++++...   ..+..+|.++
T Consensus        18 ~~~~~~~~vLDiGcG~G~~~~~la~~-~--~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~   94 (185)
T 3mti_A           18 EVLDDESIVVDATMGNGNDTAFLAGL-S--KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAI   94 (185)
T ss_dssp             TTCCTTCEEEESCCTTSHHHHHHHTT-S--SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEE
T ss_pred             HhCCCCCEEEEEcCCCCHHHHHHHHh-C--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEE
Confidence            46788999999999999999999987 3  899999999999988877764   4678888755433   2233455554


Q ss_pred             hcccC---C-cEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         443 LNLHR---G-AKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       443 ~~l~~---~-~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .++..   + ..+....-..-.....+.+.|+|+|.++.+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  134 (185)
T 3mti_A           95 FNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIM  134 (185)
T ss_dssp             EEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEE
Confidence            33210   0 000000000112235667889999998765

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.96  E-value=2.4e-09  Score=106.12  Aligned_cols=91  Identities=19%  Similarity=0.231  Sum_probs=75.4

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ..+..+|||||||+|..+..+++.+ |..+++++|+ +.+++.|++           .++++|+.+|+.+..+ .+  |+
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~~p-~~--D~  262 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHVISEAPQ-----------FPGVTHVGGDMFKEVP-SG--DT  262 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC-----------CTTEEEEECCTTTCCC-CC--SE
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHHHHhhhh-----------cCCeEEEeCCcCCCCC-CC--CE
Confidence            4567899999999999999999997 7889999999 888766542           2479999999987433 33  99


Q ss_pred             EEecCCCCch--------HHHHHhhcccCcEEEEE
Q psy7829         211 IYYGGCVSEV--------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       211 I~~~~~~~~~--------~~~~~~~LkpgG~l~~~  237 (511)
                      |++...++++        ++++++.|||||++++.
T Consensus       263 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~  297 (364)
T 3p9c_A          263 ILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLV  297 (364)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             EEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            9999888743        47899999999999884

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.96  E-value=4.9e-10  Score=105.46  Aligned_cols=104  Identities=13%  Similarity=0.193  Sum_probs=71.7

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHhhcc----ccccccccccccccccccchhhhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVG-PTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETIEIIPHILDLCYL  443 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~-~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~~~l~~~~d~i~~  443 (511)
                      ..+++|.+|||+|||+|..+..+++.++ ++.+|+|+|++++|++.+++++.    ..+++++++|..+.-...+|.+..
T Consensus        66 ~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~  145 (261)
T 4gek_A           66 RFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVL  145 (261)
T ss_dssp             HHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEE
T ss_pred             HhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccccccccee
Confidence            3578999999999999999999998864 45699999999999999888754    346888888765432222332222


Q ss_pred             cccCCcEEEEEcCCc---cHHHHHHHHHhCCCcEEEEh
Q psy7829         444 NLHRGAKVLEIGSGS---GYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       444 ~l~~~~~vLD~~~g~---g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +..     +.. ...   -.+...+++.|+|||.++..
T Consensus       146 ~~~-----l~~-~~~~~~~~~l~~i~~~LkpGG~lii~  177 (261)
T 4gek_A          146 NFT-----LQF-LEPSERQALLDKIYQGLNPGGALVLS  177 (261)
T ss_dssp             ESC-----GGG-SCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eee-----eee-cCchhHhHHHHHHHHHcCCCcEEEEE
Confidence            110     000 001   12356778889999988764

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.96  E-value=2e-09  Score=106.83  Aligned_cols=91  Identities=16%  Similarity=0.298  Sum_probs=75.2

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      +.+..+|||||||+|..+..+++.+ |..+++++|+ +.+++.+++           .++++++.+|+.+..+ .+  |+
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~~p-~~--D~  264 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPA-----------FSGVEHLGGDMFDGVP-KG--DA  264 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC-----------CTTEEEEECCTTTCCC-CC--SE
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhh-----------cCCCEEEecCCCCCCC-CC--CE
Confidence            3467899999999999999999997 7889999999 888776542           2479999999987443 23  99


Q ss_pred             EEecCCCCch--------HHHHHhhcccCcEEEEE
Q psy7829         211 IYYGGCVSEV--------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       211 I~~~~~~~~~--------~~~~~~~LkpgG~l~~~  237 (511)
                      |++...++++        ++++++.|||||++++.
T Consensus       265 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~  299 (368)
T 3reo_A          265 IFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVA  299 (368)
T ss_dssp             EEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             EEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            9999888743        47889999999999885

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.95  E-value=4e-10  Score=108.40  Aligned_cols=98  Identities=21%  Similarity=0.116  Sum_probs=70.6

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeC----CHHHHHHHHHHHhccCCCcCCCCCeEEEEc-cCCCCCCCC
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEH----IPELIEASLRNISKGNKDLLDSGRVRIVEA-DAREGYLPE  205 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~----~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~  205 (511)
                      ++++.+|||+|||+|.++..+++.    ++|+++|+    ++.+++.+.  .+.     ...+++.++++ |+....  .
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~~--~~~-----~~~~~v~~~~~~D~~~l~--~  146 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPIP--MST-----YGWNLVRLQSGVDVFFIP--P  146 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCCC--CCS-----TTGGGEEEECSCCTTTSC--C
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHHH--hhh-----cCCCCeEEEeccccccCC--c
Confidence            567899999999999999999987    35999999    554332110  111     12357999999 887542  3


Q ss_pred             CCccEEEecCCCC------------chHHHHHhhcccCcEEEEEEccC
Q psy7829         206 APYDVIYYGGCVS------------EVPSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       206 ~~fD~I~~~~~~~------------~~~~~~~~~LkpgG~l~~~~~~~  241 (511)
                      .+||+|+++.++.            .++..+.++|||||.|++.+...
T Consensus       147 ~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          147 ERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             CCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             CCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            6899999987653            12355779999999999866543

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.95  E-value=2.5e-09  Score=100.57  Aligned_cols=102  Identities=20%  Similarity=0.123  Sum_probs=80.8

Q ss_pred             cchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEE
Q psy7829         114 MNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI  193 (511)
Q Consensus       114 ~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~  193 (511)
                      +..+.+...+++.+.  +.++ +|||||||+|.++..+++..   .+|+++|+++.+++.+++++..        .++++
T Consensus        30 L~d~~i~~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~~~~~l~~~~~~--------~~v~v   95 (271)
T 3fut_A           30 LVSEAHLRRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLRLRPVLEETLSG--------LPVRL   95 (271)
T ss_dssp             ECCHHHHHHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTTT--------SSEEE
T ss_pred             cCCHHHHHHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcCC--------CCEEE
Confidence            446778888888886  7788 99999999999999999974   4699999999999999998652        37999


Q ss_pred             EEccCCCCCCCC-CCccEEEecCCCCchHHHHHhhcc
Q psy7829         194 VEADAREGYLPE-APYDVIYYGGCVSEVPSRVLNQLK  229 (511)
Q Consensus       194 ~~~d~~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~Lk  229 (511)
                      +++|+.+...+. ..+|.|++|.++.--..-+.++|.
T Consensus        96 i~~D~l~~~~~~~~~~~~iv~NlPy~iss~il~~ll~  132 (271)
T 3fut_A           96 VFQDALLYPWEEVPQGSLLVANLPYHIATPLVTRLLK  132 (271)
T ss_dssp             EESCGGGSCGGGSCTTEEEEEEECSSCCHHHHHHHHH
T ss_pred             EECChhhCChhhccCccEEEecCcccccHHHHHHHhc
Confidence            999997643322 368999999988654444444443

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.95  E-value=1.1e-08  Score=93.22  Aligned_cols=122  Identities=14%  Similarity=0.254  Sum_probs=79.7

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---cccccccccccccccc----cccchhhhhc
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETIEII----PHILDLCYLN  444 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~~~l----~~~~d~i~~~  444 (511)
                      .++.+|||||||+|.+++.+|+.. |+.+|+|+|+++++++.+.++.   +..|+.++++|.....    +..+|.++.+
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~  115 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLN  115 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred             CCCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEE
Confidence            467899999999999999999887 6789999999999988877765   4567899988876521    1223333222


Q ss_pred             ccCCcEEEEE--c-CCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCC
Q psy7829         445 LHRGAKVLEI--G-SGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIST  494 (511)
Q Consensus       445 l~~~~~vLD~--~-~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~  494 (511)
                      ....+.--.-  . .-...+...+.+.|+|+|.++..   ....+...+.+.+.++
T Consensus       116 ~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~  171 (213)
T 2fca_A          116 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGL  171 (213)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             CCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCC
Confidence            1110000000  0 00134567788899999998765   4444445555555554

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.94  E-value=3e-09  Score=97.16  Aligned_cols=122  Identities=14%  Similarity=0.183  Sum_probs=82.6

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccccccc----cccchhhhhc
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEII----PHILDLCYLN  444 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~l----~~~~d~i~~~  444 (511)
                      .++.+|||||||+|.+++.+|+.. |+.+|+|+|+++++++.+.++..   ..++.++++|..+..    +..+|.++.+
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~  118 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLN  118 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEE
Confidence            468899999999999999999887 66899999999988888777653   567889888876532    2335555444


Q ss_pred             ccCCcEEEEE--c-CCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCC
Q psy7829         445 LHRGAKVLEI--G-SGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIST  494 (511)
Q Consensus       445 l~~~~~vLD~--~-~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~  494 (511)
                      ....+.-..-  - --...+...+.+.|+|+|.++..   ....+...+.+.+.|+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~  174 (214)
T 1yzh_A          119 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGM  174 (214)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             CCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCC
Confidence            3211000000  0 00124667788889999998766   4445556666666665

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.94  E-value=2.4e-09  Score=106.51  Aligned_cols=91  Identities=20%  Similarity=0.263  Sum_probs=75.7

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      +.++.+|||||||+|..+..+++.+ +..+++++|+ +.+++.+++           .++++++.+|+.+.. + . ||+
T Consensus       207 ~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~~-~-~-~D~  270 (372)
T 1fp1_D          207 FEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPP-----------LSGIEHVGGDMFASV-P-Q-GDA  270 (372)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC-----------CTTEEEEECCTTTCC-C-C-EEE
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-HHHHHhhhh-----------cCCCEEEeCCcccCC-C-C-CCE
Confidence            4567899999999999999999997 7789999999 888876643           236999999998733 2 3 999


Q ss_pred             EEecCCCCch--------HHHHHhhcccCcEEEEE
Q psy7829         211 IYYGGCVSEV--------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       211 I~~~~~~~~~--------~~~~~~~LkpgG~l~~~  237 (511)
                      |++...++++        ++++.+.|||||++++.
T Consensus       271 v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~  305 (372)
T 1fp1_D          271 MILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIV  305 (372)
T ss_dssp             EEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            9999888643        47889999999999985

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.94  E-value=3.6e-09  Score=96.78  Aligned_cols=116  Identities=17%  Similarity=0.182  Sum_probs=79.6

Q ss_pred             CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---ccccccccccccccccc-----ccchhhhhc
Q psy7829         373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETIEIIP-----HILDLCYLN  444 (511)
Q Consensus       373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~~~l~-----~~~d~i~~~  444 (511)
                      ++.+|||||||+|.+++.+|+.. |+..|+|||++++++..++++.   +..|+.++.+|+.+.++     ..+|.++.+
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~  112 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF  112 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence            68899999999999999999887 7789999999998888877664   46789999998766432     334444433


Q ss_pred             ccCCcEEEEEcCC-----ccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHh
Q psy7829         445 LHRGAKVLEIGSG-----SGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIAN  491 (511)
Q Consensus       445 l~~~~~vLD~~~g-----~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~  491 (511)
                      ....+.-  ...-     ...+...+++.|+|||.++..   ....+...+.+..
T Consensus       113 ~~~p~~~--~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~  165 (218)
T 3dxy_A          113 FPDPWHK--ARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSS  165 (218)
T ss_dssp             SCCCCCS--GGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCCccc--hhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence            2111100  0000     013667888899999998776   5555555555544

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.93  E-value=1.2e-08  Score=90.39  Aligned_cols=131  Identities=13%  Similarity=0.203  Sum_probs=88.3

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANET  430 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~  430 (511)
                      +..+.....++..  +...++.+|||+|||+|.++..+++   +..+|+++|+++++++.+++++.   ..+++++.+|.
T Consensus        18 ~~~~~~~~~~~~~--~~~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~   92 (183)
T 2yxd_A           18 ITKEEIRAVSIGK--LNLNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRA   92 (183)
T ss_dssp             CCCHHHHHHHHHH--HCCCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCH
T ss_pred             cCHHHHHHHHHHH--cCCCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCc
Confidence            3456666666666  6778899999999999999999987   34899999999998888777754   35678887776


Q ss_pred             ccccc-ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCCCceEEEe
Q psy7829         431 IEIIP-HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDLIA  501 (511)
Q Consensus       431 ~~~l~-~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~~~i~~i~  501 (511)
                      .+.++ ..+|.++.+..         .....+...+.+ + |+|.++..   ..-+....+.+++.|. +++.++
T Consensus        93 ~~~~~~~~~D~i~~~~~---------~~~~~~l~~~~~-~-~gG~l~~~~~~~~~~~~~~~~l~~~g~-~~~~~~  155 (183)
T 2yxd_A           93 EDVLDKLEFNKAFIGGT---------KNIEKIIEILDK-K-KINHIVANTIVLENAAKIINEFESRGY-NVDAVN  155 (183)
T ss_dssp             HHHGGGCCCSEEEECSC---------SCHHHHHHHHHH-T-TCCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             cccccCCCCcEEEECCc---------ccHHHHHHHHhh-C-CCCEEEEEecccccHHHHHHHHHHcCC-eEEEEE
Confidence            55333 23444433221         122233334444 4 89998776   5555666777777775 555443

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.93  E-value=3.2e-09  Score=103.62  Aligned_cols=108  Identities=20%  Similarity=0.186  Sum_probs=85.5

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCc-CCCCCeEEEEccCCCCC-CCCCCc
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDL-LDSGRVRIVEADAREGY-LPEAPY  208 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~v~~~~~d~~~~~-~~~~~f  208 (511)
                      .++|.+|||+|+|+|.-+.+++... ..+.|+++|+++..++..++++++.+... ....++.+...|+.... ...+.|
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~-~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~f  224 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTG-CCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTY  224 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTT-CEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCE
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhc-CCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccC
Confidence            7899999999999999999999875 66789999999999999999998865321 12357899999986422 123689


Q ss_pred             cEEEecCCCCc------------------------------hHHHHHhhcccCcEEEEEEc
Q psy7829         209 DVIYYGGCVSE------------------------------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       209 D~I~~~~~~~~------------------------------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      |.|+++.+|..                              ++..+.+.|||||+|+.++-
T Consensus       225 D~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTC  285 (359)
T 4fzv_A          225 DRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTC  285 (359)
T ss_dssp             EEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred             CEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Confidence            99999988732                              12456788999999998643

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.93  E-value=9.3e-09  Score=97.46  Aligned_cols=91  Identities=15%  Similarity=0.166  Sum_probs=69.5

Q ss_pred             cCCCCCEEEEEcCCc------cHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEE-EEccCCCCC
Q psy7829         130 HLVDGAKVLDLGSGS------GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI-VEADAREGY  202 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~------G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~-~~~d~~~~~  202 (511)
                      .++++.+|||+|||+      |.  ..+++..++.++|+|+|+++.        + .         ++++ +++|+.+..
T Consensus        60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v-~---------~v~~~i~gD~~~~~  119 (290)
T 2xyq_A           60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V-S---------DADSTLIGDCATVH  119 (290)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B-C---------SSSEEEESCGGGCC
T ss_pred             CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C-C---------CCEEEEECccccCC
Confidence            367899999999944      66  556777755789999999988        1 1         4778 999998643


Q ss_pred             CCCCCccEEEecCCCC-----------------chHHHHHhhcccCcEEEEEEccC
Q psy7829         203 LPEAPYDVIYYGGCVS-----------------EVPSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       203 ~~~~~fD~I~~~~~~~-----------------~~~~~~~~~LkpgG~l~~~~~~~  241 (511)
                      . .++||+|+++...+                 .+.+.+.+.|||||.|++.+...
T Consensus       120 ~-~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~  174 (290)
T 2xyq_A          120 T-ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH  174 (290)
T ss_dssp             C-SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred             c-cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            3 36899999975432                 24578899999999999976543

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.92  E-value=1.3e-09  Score=106.63  Aligned_cols=117  Identities=15%  Similarity=0.110  Sum_probs=80.9

Q ss_pred             CCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc----------c--c
Q psy7829         353 GPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI----------S--T  420 (511)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~----------~--~  420 (511)
                      |+..+..+..++..  +.+.++++|||||||+|..++.+|...+ ..+|+|||+++++++.+.++.          +  .
T Consensus       155 GEt~~~~i~~il~~--l~l~~gd~VLDLGCGtG~l~l~lA~~~g-~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~  231 (438)
T 3uwp_A          155 GETSFDLVAQMIDE--IKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKH  231 (438)
T ss_dssp             GGTHHHHHHHHHHH--HCCCTTCEEEEESCTTSHHHHHHHHHCC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCC
T ss_pred             CCCCHHHHHHHHHh--cCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            35677888888887  7889999999999999999999998774 357999999987777665532          2  2


Q ss_pred             ccccccccccccccc----ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         421 NHIDLIANETIEIIP----HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       421 ~~v~~i~~d~~~~l~----~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .+++++++|..+..-    ..+|.++.+..-      ...........+.+.|+|||+|+..
T Consensus       232 ~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~------F~pdl~~aL~Ei~RvLKPGGrIVss  287 (438)
T 3uwp_A          232 AEYTLERGDFLSEEWRERIANTSVIFVNNFA------FGPEVDHQLKERFANMKEGGRIVSS  287 (438)
T ss_dssp             CEEEEEECCTTSHHHHHHHHTCSEEEECCTT------CCHHHHHHHHHHHTTSCTTCEEEES
T ss_pred             CCeEEEECcccCCccccccCCccEEEEcccc------cCchHHHHHHHHHHcCCCCcEEEEe
Confidence            679999998655311    123333332110      0011122234566788999999987

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=98.91  E-value=3.2e-09  Score=95.52  Aligned_cols=110  Identities=17%  Similarity=0.251  Sum_probs=75.1

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----cccccccccccccc---cccchhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETIEII---PHILDLC  441 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~~l---~~~~d~i  441 (511)
                      ..++++.+|||+|||+|..+..+++.+++.++|+++|+++++++.+++++..    ++++++++|.....   +..+|.+
T Consensus        18 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v   97 (197)
T 3eey_A           18 MFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAV   97 (197)
T ss_dssp             HHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEE
T ss_pred             hcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEE
Confidence            5678899999999999999999999987778999999999999888877653    57888888854432   2334444


Q ss_pred             hhcccC---C-cEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         442 YLNLHR---G-AKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       442 ~~~l~~---~-~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +.+..-   + ..+..-.-..-.+...+.+.|+|+|.++.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~  138 (197)
T 3eey_A           98 MFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVV  138 (197)
T ss_dssp             EEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEE
Confidence            433210   0 000000000113566777889999998755

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.91  E-value=4.1e-11  Score=112.10  Aligned_cols=113  Identities=17%  Similarity=0.184  Sum_probs=86.7

Q ss_pred             cchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEE
Q psy7829         114 MNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI  193 (511)
Q Consensus       114 ~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~  193 (511)
                      +..+.+...+++.+.  +.++.+|||+|||+|.++..+++..   .+|+|+|+++.+++.+++++..       .+++++
T Consensus        12 l~~~~~~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~~-------~~~v~~   79 (245)
T 1yub_A           12 LTSEKVLNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKL-------NTRVTL   79 (245)
T ss_dssp             CCCTTTHHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTT-------CSEEEE
T ss_pred             CCCHHHHHHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhcc-------CCceEE
Confidence            344556777777775  6788899999999999999999884   5799999999999998877642       347999


Q ss_pred             EEccCCCCCCC-CCCccEEEecCCCCc-----------------hH----HHHHhhcccCcEEEEEEc
Q psy7829         194 VEADAREGYLP-EAPYDVIYYGGCVSE-----------------VP----SRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       194 ~~~d~~~~~~~-~~~fD~I~~~~~~~~-----------------~~----~~~~~~LkpgG~l~~~~~  239 (511)
                      +++|+.+.... .++| .|+++.++..                 ..    +.+.+.|+|||.+++.+.
T Consensus        80 ~~~D~~~~~~~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~  146 (245)
T 1yub_A           80 IHQDILQFQFPNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLH  146 (245)
T ss_dssp             CCSCCTTTTCCCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred             EECChhhcCcccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence            99999864433 3578 7788765531                 11    558899999999877543

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.91  E-value=7.5e-10  Score=100.74  Aligned_cols=112  Identities=12%  Similarity=0.067  Sum_probs=77.6

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cc-ccccccccccccccc--cchhhhh
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TN-HIDLIANETIEIIPH--ILDLCYL  443 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~-~v~~i~~d~~~~l~~--~~d~i~~  443 (511)
                      -+++|.+|||||||+|++++.+|+.. |..+|+|+|+++..++.+++|+.   .. +++++.+|..+.++.  .+|.   
T Consensus        12 ~v~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~---   87 (225)
T 3kr9_A           12 FVSQGAILLDVGSDHAYLPIELVERG-QIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSV---   87 (225)
T ss_dssp             TSCTTEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCE---
T ss_pred             hCCCCCEEEEeCCCcHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCE---
Confidence            45788999999999999999999864 66899999999988888777765   33 477888887665543  2332   


Q ss_pred             cccCCcEEEEEcCCccHH-----HHHHHHHhCCCcEEEEh-HHHHHHHHHHHHhcCC
Q psy7829         444 NLHRGAKVLEIGSGSGYL-----ATLMAHLVGPTGHVTGL-EHMMDIAIESIANIST  494 (511)
Q Consensus       444 ~l~~~~~vLD~~~g~g~~-----~~~l~~~l~~~g~v~~~-~~ml~~a~~~~~~~~~  494 (511)
                             ++-  +|.|.-     .......++++++++.- ..-....++.+.++|+
T Consensus        88 -------Ivi--aG~Gg~~i~~Il~~~~~~L~~~~~lVlq~~~~~~~vr~~L~~~Gf  135 (225)
T 3kr9_A           88 -------ITI--AGMGGRLIARILEEGLGKLANVERLILQPNNREDDLRIWLQDHGF  135 (225)
T ss_dssp             -------EEE--EEECHHHHHHHHHHTGGGCTTCCEEEEEESSCHHHHHHHHHHTTE
T ss_pred             -------EEE--cCCChHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHCCC
Confidence                   221  344432     22234567888887766 2334556667777665

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.91  E-value=3.3e-09  Score=106.11  Aligned_cols=117  Identities=15%  Similarity=0.149  Sum_probs=80.3

Q ss_pred             CCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHH-------Hhhc---c--c
Q psy7829         353 GPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIES-------IANI---S--T  420 (511)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~-------~~~~---~--~  420 (511)
                      |...+..++.++..  +.+.++.+|||||||+|++++.+|+..+ ..+|+|+|+++.+++.+       ++++   +  .
T Consensus       224 Get~p~~v~~ml~~--l~l~~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~  300 (433)
T 1u2z_A          224 GELLPNFLSDVYQQ--CQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRL  300 (433)
T ss_dssp             CCBCHHHHHHHHHH--TTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCC
T ss_pred             ccccHHHHHHHHHh--cCCCCCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCC
Confidence            34567888888887  7888999999999999999999999874 36899999998877665       5544   3  4


Q ss_pred             ccccccccccccc------ccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         421 NHIDLIANETIEI------IPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       421 ~~v~~i~~d~~~~------l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .+++++.+|....      ....+|.++.+..-      .+...-.....+.+.|+|||.++..
T Consensus       301 ~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l------~~~d~~~~L~el~r~LKpGG~lVi~  358 (433)
T 1u2z_A          301 NNVEFSLKKSFVDNNRVAELIPQCDVILVNNFL------FDEDLNKKVEKILQTAKVGCKIISL  358 (433)
T ss_dssp             CCEEEEESSCSTTCHHHHHHGGGCSEEEECCTT------CCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             CceEEEEcCccccccccccccCCCCEEEEeCcc------ccccHHHHHHHHHHhCCCCeEEEEe
Confidence            6788887654321      12334544432110      0001112235677889999999887

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.91  E-value=2.5e-09  Score=102.18  Aligned_cols=94  Identities=22%  Similarity=0.256  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829         117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA  196 (511)
Q Consensus       117 p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  196 (511)
                      |.+...+++.+.  +.++.+|||+|||+|..+..+++.+ +.++|+++|+|+.+++.|++++..+     + ++++++++
T Consensus        12 pvLl~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~-~~~~VigvD~d~~al~~A~~~~~~~-----g-~~v~~v~~   82 (301)
T 1m6y_A           12 PVMVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEF-----S-DRVSLFKV   82 (301)
T ss_dssp             CTTHHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGG-----T-TTEEEEEC
T ss_pred             HHHHHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhc-----C-CcEEEEEC
Confidence            446677788886  7789999999999999999999987 4789999999999999999998874     2 58999999


Q ss_pred             cCCCCC---C--CCCCccEEEecCCCCc
Q psy7829         197 DAREGY---L--PEAPYDVIYYGGCVSE  219 (511)
Q Consensus       197 d~~~~~---~--~~~~fD~I~~~~~~~~  219 (511)
                      |+.+..   .  ...+||.|+++.++..
T Consensus        83 d~~~l~~~l~~~g~~~~D~Vl~D~gvSs  110 (301)
T 1m6y_A           83 SYREADFLLKTLGIEKVDGILMDLGVST  110 (301)
T ss_dssp             CGGGHHHHHHHTTCSCEEEEEEECSCCH
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEcCccch
Confidence            986521   1  1157999999887643

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.90  E-value=1.4e-09  Score=101.61  Aligned_cols=114  Identities=10%  Similarity=0.094  Sum_probs=82.5

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---ccccccccccccccccc-----ccchhhh
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETIEIIP-----HILDLCY  442 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~~~l~-----~~~d~i~  442 (511)
                      ..++.+|||||||+|..++.+|... |+.+|+++|+++++++.++++.   +..|+++++++..+...     ..||.++
T Consensus        78 ~~~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~  156 (249)
T 3g89_A           78 WQGPLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAV  156 (249)
T ss_dssp             CCSSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEE
Confidence            3578999999999999999999887 6789999999988887766654   46678899888655432     3466555


Q ss_pred             hcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh-----HHHHHHHHHHHHhcCC
Q psy7829         443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL-----EHMMDIAIESIANIST  494 (511)
Q Consensus       443 ~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~-----~~ml~~a~~~~~~~~~  494 (511)
                      ...         ......+...+.+.|+|+|.++.+     .+-++.+.+.++..|+
T Consensus       157 s~a---------~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~  204 (249)
T 3g89_A          157 ARA---------VAPLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGG  204 (249)
T ss_dssp             EES---------SCCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTE
T ss_pred             ECC---------cCCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCC
Confidence            421         112334556677888999998876     4445556666666665

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.90  E-value=2.8e-09  Score=100.21  Aligned_cols=123  Identities=19%  Similarity=0.204  Sum_probs=88.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----cc
Q psy7829         347 GSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NH  422 (511)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~  422 (511)
                      ...++.+|..+..+..++.. ...+.++.+|||+|||+|..+..+++..+  ++|+++|+++.+++.++++...    ++
T Consensus        21 ~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~   97 (257)
T 3f4k_A           21 KLLKRQGPGSPEATRKAVSF-INELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADR   97 (257)
T ss_dssp             TTSSCSSSCCHHHHHHHHTT-SCCCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTT
T ss_pred             cCccccCCCCHHHHHHHHHH-HhcCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCc
Confidence            34556678888888888776 22677899999999999999999999873  5999999999988887776542    23


Q ss_pred             cccccccccccc--cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         423 IDLIANETIEII--PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       423 v~~i~~d~~~~l--~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ++++.+|.....  +..+|.++....-..      .+...+...+.+.|+|+|.++..
T Consensus        98 ~~~~~~d~~~~~~~~~~fD~v~~~~~l~~------~~~~~~l~~~~~~L~pgG~l~~~  149 (257)
T 3f4k_A           98 VKGITGSMDNLPFQNEELDLIWSEGAIYN------IGFERGMNEWSKYLKKGGFIAVS  149 (257)
T ss_dssp             EEEEECCTTSCSSCTTCEEEEEEESCSCC------CCHHHHHHHHHTTEEEEEEEEEE
T ss_pred             eEEEECChhhCCCCCCCEEEEEecChHhh------cCHHHHHHHHHHHcCCCcEEEEE
Confidence            788887764321  244565544321111      13455667788889999988765

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.90  E-value=2.4e-09  Score=98.79  Aligned_cols=112  Identities=18%  Similarity=0.187  Sum_probs=77.8

Q ss_pred             HHHHHHHHHH-hhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc-cccccccccccccc
Q psy7829         357 ERSIAHILDL-CYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST-NHIDLIANETIEII  434 (511)
Q Consensus       357 ~~~~~~~~~~-~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~-~~v~~i~~d~~~~l  434 (511)
                      ++....++.. ..+.+.++.+|||+|||+|.++..+++.+++.++|+++|+++++++.+.++... .+++++.+|..+..
T Consensus        56 ~~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~  135 (227)
T 1g8a_A           56 SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPE  135 (227)
T ss_dssp             CHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGG
T ss_pred             hhHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcc
Confidence            4555555432 124577899999999999999999999887778999999999988877766653 57888887764421


Q ss_pred             -----cccchhhhhcccCCcEEEEEcCCcc---HHHHHHHHHhCCCcEEEEh
Q psy7829         435 -----PHILDLCYLNLHRGAKVLEIGSGSG---YLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       435 -----~~~~d~i~~~l~~~~~vLD~~~g~g---~~~~~l~~~l~~~g~v~~~  478 (511)
                           +..+|.++.+         .. .+.   .+...+.+.|+|+|.++..
T Consensus       136 ~~~~~~~~~D~v~~~---------~~-~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          136 EYRALVPKVDVIFED---------VA-QPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             GGTTTCCCEEEEEEC---------CC-STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhcccCCceEEEEC---------CC-CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence                 2234443322         22 111   2256677889999998764

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.90  E-value=1.2e-08  Score=95.11  Aligned_cols=91  Identities=16%  Similarity=0.268  Sum_probs=71.2

Q ss_pred             chhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEE
Q psy7829         115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIV  194 (511)
Q Consensus       115 ~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~  194 (511)
                      ..+.+...+++.+.  +.++.+|||+|||+|.++..+++..   .+|+++|+++.+++.+++++..       .++++++
T Consensus        14 ~d~~~~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~-------~~~v~~~   81 (244)
T 1qam_A           14 TSKHNIDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVD-------HDNFQVL   81 (244)
T ss_dssp             CCHHHHHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTT-------CCSEEEE
T ss_pred             CCHHHHHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhcc-------CCCeEEE
Confidence            45566677776664  5688999999999999999999985   5799999999999999998754       2489999


Q ss_pred             EccCCCCCCC-CCCccEEEecCCCC
Q psy7829         195 EADAREGYLP-EAPYDVIYYGGCVS  218 (511)
Q Consensus       195 ~~d~~~~~~~-~~~fD~I~~~~~~~  218 (511)
                      ++|+.+...+ ...| .|+++.++.
T Consensus        82 ~~D~~~~~~~~~~~~-~vv~nlPy~  105 (244)
T 1qam_A           82 NKDILQFKFPKNQSY-KIFGNIPYN  105 (244)
T ss_dssp             CCCGGGCCCCSSCCC-EEEEECCGG
T ss_pred             EChHHhCCcccCCCe-EEEEeCCcc
Confidence            9999864433 2345 577776653

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.90  E-value=3.4e-09  Score=104.69  Aligned_cols=91  Identities=16%  Similarity=0.270  Sum_probs=75.6

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      +.++.+|||||||+|..+..+++.+ |..+++++|+ +.+++.|++           .++++++.+|+.+.. +  .||+
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~~-p--~~D~  249 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSG-----------SNNLTYVGGDMFTSI-P--NADA  249 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC-----------BTTEEEEECCTTTCC-C--CCSE
T ss_pred             cccCceEEEeCCCccHHHHHHHHHC-CCCeEEEeeC-HHHHhhccc-----------CCCcEEEeccccCCC-C--CccE
Confidence            4567899999999999999999987 7789999999 999877653           135999999997633 2  3999


Q ss_pred             EEecCCCCch--------HHHHHhhccc---CcEEEEE
Q psy7829         211 IYYGGCVSEV--------PSRVLNQLKK---GGRILAP  237 (511)
Q Consensus       211 I~~~~~~~~~--------~~~~~~~Lkp---gG~l~~~  237 (511)
                      |++...++++        ++++.+.|||   ||++++.
T Consensus       250 v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~  287 (352)
T 1fp2_A          250 VLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTII  287 (352)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred             EEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence            9999888643        4778999999   9999885

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.90  E-value=4.5e-09  Score=95.99  Aligned_cols=111  Identities=23%  Similarity=0.358  Sum_probs=81.2

Q ss_pred             CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccccc
Q psy7829         355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETI  431 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~  431 (511)
                      ..+..+..++..  +.+.++.+|||+|||+|+++..+++..+++.+|+++|+++++++.+++++.   ..+++++.+|..
T Consensus        61 ~~~~~~~~~~~~--~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~  138 (215)
T 2yxe_A           61 SAIHMVGMMCEL--LDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGT  138 (215)
T ss_dssp             CCHHHHHHHHHH--TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGG
T ss_pred             CcHHHHHHHHHh--hCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcc
Confidence            356777788877  678899999999999999999999998777899999999998888777653   456777777754


Q ss_pred             cccc--ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         432 EIIP--HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       432 ~~l~--~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ...+  ..+|.++..           .+...+...+.+.|+|+|.++..
T Consensus       139 ~~~~~~~~fD~v~~~-----------~~~~~~~~~~~~~L~pgG~lv~~  176 (215)
T 2yxe_A          139 LGYEPLAPYDRIYTT-----------AAGPKIPEPLIRQLKDGGKLLMP  176 (215)
T ss_dssp             GCCGGGCCEEEEEES-----------SBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             cCCCCCCCeeEEEEC-----------CchHHHHHHHHHHcCCCcEEEEE
Confidence            3322  223333322           11222335777888999998776

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=98.89  E-value=1.4e-09  Score=100.74  Aligned_cols=110  Identities=20%  Similarity=0.339  Sum_probs=78.4

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c-ccccccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T-NHIDLIANETI  431 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~-~~v~~i~~d~~  431 (511)
                      .+.....+..+  +...++.+|||||||+|+.++.+|+.. +.++|+++|+++++++.+++++.   . ++++++.+|..
T Consensus        56 ~~~~~~~l~~~--~~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (232)
T 3ntv_A           56 DRLTLDLIKQL--IRMNNVKNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNAL  132 (232)
T ss_dssp             CHHHHHHHHHH--HHHHTCCEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGG
T ss_pred             CHHHHHHHHHH--HhhcCCCEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHH
Confidence            34444444444  455688999999999999999999854 67999999999998888877764   3 36889999877


Q ss_pred             cccc----ccchhhhhcccCCcEEEEEcC-CccHHHHHHHHHhCCCcEEEE
Q psy7829         432 EIIP----HILDLCYLNLHRGAKVLEIGS-GSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       432 ~~l~----~~~d~i~~~l~~~~~vLD~~~-g~g~~~~~l~~~l~~~g~v~~  477 (511)
                      +.++    ..+|.++.+         ..+ ..-.+...+.+.|+|+|.++.
T Consensus       133 ~~~~~~~~~~fD~V~~~---------~~~~~~~~~l~~~~~~LkpgG~lv~  174 (232)
T 3ntv_A          133 EQFENVNDKVYDMIFID---------AAKAQSKKFFEIYTPLLKHQGLVIT  174 (232)
T ss_dssp             GCHHHHTTSCEEEEEEE---------TTSSSHHHHHHHHGGGEEEEEEEEE
T ss_pred             HHHHhhccCCccEEEEc---------CcHHHHHHHHHHHHHhcCCCeEEEE
Confidence            6554    345555432         222 122344566788899999987

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.89  E-value=1.3e-09  Score=101.03  Aligned_cols=123  Identities=16%  Similarity=0.146  Sum_probs=80.2

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---------ccccccccccccccccc-----
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---------STNHIDLIANETIEIIP-----  435 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---------~~~~v~~i~~d~~~~l~-----  435 (511)
                      ...++.+|||||||+|.+++.+|+.. |+..|+|||+++.+++.+++++         +..|+.++.+|..+.++     
T Consensus        43 ~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~  121 (235)
T 3ckk_A           43 RAQAQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYK  121 (235)
T ss_dssp             ---CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCT
T ss_pred             ccCCCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCC
Confidence            34567899999999999999999876 6789999999999888766542         35689999988765333     


Q ss_pred             ccchhhhhcccCCcEEEEE---cCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcC
Q psy7829         436 HILDLCYLNLHRGAKVLEI---GSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIS  493 (511)
Q Consensus       436 ~~~d~i~~~l~~~~~vLD~---~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~  493 (511)
                      ..+|.++......+.-..-   -.-...+...+++.|+|||.++..   ....+...+.+...+
T Consensus       122 ~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~  185 (235)
T 3ckk_A          122 GQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHP  185 (235)
T ss_dssp             TCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTST
T ss_pred             cCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCC
Confidence            2344443322211100000   000124567788999999998776   556666666666655

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.89  E-value=2.6e-09  Score=97.61  Aligned_cols=91  Identities=18%  Similarity=0.146  Sum_probs=70.3

Q ss_pred             HHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC
Q psy7829         122 DAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG  201 (511)
Q Consensus       122 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  201 (511)
                      .+++.+. ...++.+|||+|||+|.++..++      .+++++|+++.                    +++++++|+.+.
T Consensus        57 ~~~~~l~-~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~--------------------~~~~~~~d~~~~  109 (215)
T 2zfu_A           57 RIARDLR-QRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL--------------------DPRVTVCDMAQV  109 (215)
T ss_dssp             HHHHHHH-TSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS--------------------STTEEESCTTSC
T ss_pred             HHHHHHh-ccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC--------------------CceEEEeccccC
Confidence            3455554 24577899999999999987763      46999999987                    156788898775


Q ss_pred             CCCCCCccEEEecCCCCc-----hHHHHHhhcccCcEEEEEEc
Q psy7829         202 YLPEAPYDVIYYGGCVSE-----VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       202 ~~~~~~fD~I~~~~~~~~-----~~~~~~~~LkpgG~l~~~~~  239 (511)
                      ..+.++||+|++..++++     +++++.+.|+|||.+++...
T Consensus       110 ~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~  152 (215)
T 2zfu_A          110 PLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEV  152 (215)
T ss_dssp             SCCTTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCCCCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEEEEc
Confidence            445578999999988753     34788999999999998643

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.88  E-value=3.5e-09  Score=98.87  Aligned_cols=100  Identities=16%  Similarity=0.214  Sum_probs=73.4

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c-ccccccccccccccc---------
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T-NHIDLIANETIEIIP---------  435 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~-~~v~~i~~d~~~~l~---------  435 (511)
                      +...++.+|||||||+|+.++.+|+.++++++|+++|+++++++.+++++.   . ++++++.+|+.+.++         
T Consensus        75 ~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~  154 (247)
T 1sui_A           75 LKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNH  154 (247)
T ss_dssp             HHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGT
T ss_pred             HHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCC
Confidence            344578899999999999999999988547999999999988888777654   3 468888888766543         


Q ss_pred             ccchhhhhcccCCcEEEEEcC-CccHHHHHHHHHhCCCcEEEE
Q psy7829         436 HILDLCYLNLHRGAKVLEIGS-GSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       436 ~~~d~i~~~l~~~~~vLD~~~-g~g~~~~~l~~~l~~~g~v~~  477 (511)
                      ..||.++.+         ..+ ..-.+...+.+.|+|||.++.
T Consensus       155 ~~fD~V~~d---------~~~~~~~~~l~~~~~~LkpGG~lv~  188 (247)
T 1sui_A          155 GSYDFIFVD---------ADKDNYLNYHKRLIDLVKVGGVIGY  188 (247)
T ss_dssp             TCBSEEEEC---------SCSTTHHHHHHHHHHHBCTTCCEEE
T ss_pred             CCEEEEEEc---------CchHHHHHHHHHHHHhCCCCeEEEE
Confidence            335554432         222 223445567788999999875

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.88  E-value=2.2e-10  Score=113.74  Aligned_cols=104  Identities=18%  Similarity=0.207  Sum_probs=72.8

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccc--ccccccccccccc--ccchhhhhccc
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH--IDLIANETIEIIP--HILDLCYLNLH  446 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~--v~~i~~d~~~~l~--~~~d~i~~~l~  446 (511)
                      ..++.+|||+|||+|.+++.+++..   .+|+++|+++.+++.+++|+..++  ++++.+|..+...  ..+|.++.+..
T Consensus       231 ~~~~~~VLDlGcG~G~~~~~la~~g---~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp  307 (381)
T 3dmg_A          231 GVRGRQVLDLGAGYGALTLPLARMG---AEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPP  307 (381)
T ss_dssp             TTTTCEEEEETCTTSTTHHHHHHTT---CEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCC
T ss_pred             CCCCCEEEEEeeeCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCc
Confidence            3478899999999999999999873   799999999999998888876433  6777887666543  36777666533


Q ss_pred             CCcEEEEEcC-CccHHHHHHHHHhCCCcEEEEh
Q psy7829         447 RGAKVLEIGS-GSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       447 ~~~~vLD~~~-g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      -.... .... ..-.+...+.+.|+|+|.++.+
T Consensus       308 ~~~~~-~~~~~~~~~~l~~~~~~LkpGG~l~iv  339 (381)
T 3dmg_A          308 FHVGG-AVILDVAQAFVNVAAARLRPGGVFFLV  339 (381)
T ss_dssp             CCTTC-SSCCHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhcc-cccHHHHHHHHHHHHHhcCcCcEEEEE
Confidence            22100 0000 0113445667889999998876

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.88  E-value=4.4e-09  Score=95.64  Aligned_cols=108  Identities=22%  Similarity=0.334  Sum_probs=80.8

Q ss_pred             CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccccc
Q psy7829         355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETI  431 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~  431 (511)
                      ..+..++.++..  +.+.++.+|||+|||+|+++..+++..   .+|+++|+++++++.+++++.   ..+++++.+|..
T Consensus        61 ~~~~~~~~~~~~--l~~~~~~~vLdiG~G~G~~~~~la~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~  135 (210)
T 3lbf_A           61 SQPYMVARMTEL--LELTPQSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGW  135 (210)
T ss_dssp             CCHHHHHHHHHH--TTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG
T ss_pred             CCHHHHHHHHHh--cCCCCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcc
Confidence            466778888887  788899999999999999999999884   899999999998888777654   557888888866


Q ss_pred             cccc--ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         432 EIIP--HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       432 ~~l~--~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +...  ..+|.++...           +...+...+.+.|+|+|.++..
T Consensus       136 ~~~~~~~~~D~i~~~~-----------~~~~~~~~~~~~L~pgG~lv~~  173 (210)
T 3lbf_A          136 QGWQARAPFDAIIVTA-----------APPEIPTALMTQLDEGGILVLP  173 (210)
T ss_dssp             GCCGGGCCEEEEEESS-----------BCSSCCTHHHHTEEEEEEEEEE
T ss_pred             cCCccCCCccEEEEcc-----------chhhhhHHHHHhcccCcEEEEE
Confidence            5432  2344444321           1222234678889999988775

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.88  E-value=4.8e-09  Score=97.16  Aligned_cols=100  Identities=20%  Similarity=0.284  Sum_probs=71.1

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc-cccccccccccccc-----cccchhhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST-NHIDLIANETIEII-----PHILDLCY  442 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~-~~v~~i~~d~~~~l-----~~~~d~i~  442 (511)
                      +.+.++.+|||+|||+|.++..+++.+++.++|+++|+++.+++.+.++... .+++++.+|..+..     +..+|.++
T Consensus        73 ~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~  152 (233)
T 2ipx_A           73 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIF  152 (233)
T ss_dssp             CCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEE
T ss_pred             ecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEE
Confidence            5677899999999999999999999987778999999998766554444332 67888888765421     22345444


Q ss_pred             hcccCCcEEEEEcCCccH---HHHHHHHHhCCCcEEEEh
Q psy7829         443 LNLHRGAKVLEIGSGSGY---LATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       443 ~~l~~~~~vLD~~~g~g~---~~~~l~~~l~~~g~v~~~  478 (511)
                      .+..          .+..   +...+.+.|+|+|.++..
T Consensus       153 ~~~~----------~~~~~~~~~~~~~~~LkpgG~l~i~  181 (233)
T 2ipx_A          153 ADVA----------QPDQTRIVALNAHTFLRNGGHFVIS  181 (233)
T ss_dssp             ECCC----------CTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EcCC----------CccHHHHHHHHHHHHcCCCeEEEEE
Confidence            4221          3322   245578889999988765

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.88  E-value=5.4e-09  Score=101.52  Aligned_cols=110  Identities=22%  Similarity=0.358  Sum_probs=78.5

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---cccccccccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETIE  432 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~~  432 (511)
                      .+.....++..  +.++++.+|||||||+|.++..+++..+.+++|+++|+++++++.+++++   +..+++++.+|..+
T Consensus        60 ~~~~~~~l~~~--l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~  137 (317)
T 1dl5_A           60 QPSLMALFMEW--VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYY  137 (317)
T ss_dssp             CHHHHHHHHHH--TTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG
T ss_pred             CHHHHHHHHHh--cCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhh
Confidence            56777787777  78889999999999999999999998743578999999999988887765   35568888887655


Q ss_pred             ccc--ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         433 IIP--HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       433 ~l~--~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..+  ..+|.++....-           ..+...+.+.|+|+|.++..
T Consensus       138 ~~~~~~~fD~Iv~~~~~-----------~~~~~~~~~~LkpgG~lvi~  174 (317)
T 1dl5_A          138 GVPEFSPYDVIFVTVGV-----------DEVPETWFTQLKEGGRVIVP  174 (317)
T ss_dssp             CCGGGCCEEEEEECSBB-----------SCCCHHHHHHEEEEEEEEEE
T ss_pred             ccccCCCeEEEEEcCCH-----------HHHHHHHHHhcCCCcEEEEE
Confidence            332  234443332111           11124566777787776654

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.88  E-value=1e-08  Score=95.73  Aligned_cols=123  Identities=13%  Similarity=0.235  Sum_probs=80.3

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc-----------ccccccccccccccccccc-
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI-----------STNHIDLIANETIEIIPHI-  437 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~-----------~~~~v~~i~~d~~~~l~~~-  437 (511)
                      .++++.+|||||||+|.+++.+|+.. |..+|+|+|+++.+++.+.+++           +..|+.++.+|..+.++.. 
T Consensus        46 ~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~  124 (246)
T 2vdv_E           46 QMTKKVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFF  124 (246)
T ss_dssp             CBSCCEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTS
T ss_pred             cCCCCCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhc
Confidence            34578899999999999999999887 6679999999998887766554           4467889888876644422 


Q ss_pred             ----chhhhhcccCCcEEE--EEcC-CccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcC
Q psy7829         438 ----LDLCYLNLHRGAKVL--EIGS-GSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIS  493 (511)
Q Consensus       438 ----~d~i~~~l~~~~~vL--D~~~-g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~  493 (511)
                          ++.++....+.+.--  ..-. -...+...+.+.|+|||.++..   ....+...+.+...+
T Consensus       125 ~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  190 (246)
T 2vdv_E          125 EKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHP  190 (246)
T ss_dssp             CTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHST
T ss_pred             cccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhCc
Confidence                222222111110000  0000 0025667788899999998776   555555555565554

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.88  E-value=6.3e-09  Score=100.80  Aligned_cols=100  Identities=19%  Similarity=0.244  Sum_probs=75.9

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---ccccccccccccccccc--ccchhhhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETIEIIP--HILDLCYL  443 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~~~l~--~~~d~i~~  443 (511)
                      +.+.++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.+++|+   +..+++++++|......  ..+|    
T Consensus       114 l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD----  189 (315)
T 1ixk_A          114 LDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFD----  189 (315)
T ss_dssp             HCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEE----
T ss_pred             hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCC----
Confidence            67889999999999999999999998865689999999988888776665   45678888888655322  1233    


Q ss_pred             cccCCcEEEEEcC-Ccc-------------------------HHHHHHHHHhCCCcEEEE
Q psy7829         444 NLHRGAKVLEIGS-GSG-------------------------YLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       444 ~l~~~~~vLD~~~-g~g-------------------------~~~~~l~~~l~~~g~v~~  477 (511)
                           ..++|..| |.|                         .+...+++.|+|||.++.
T Consensus       190 -----~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~  244 (315)
T 1ixk_A          190 -----KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVY  244 (315)
T ss_dssp             -----EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             -----EEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence                 34556666 555                         344567788999999876

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=98.88  E-value=2.6e-09  Score=95.54  Aligned_cols=119  Identities=14%  Similarity=0.101  Sum_probs=76.7

Q ss_pred             CCCHHHHHHHHHHhhc-CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccc
Q psy7829         354 PSSERSIAHILDLCYL-NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANE  429 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~-~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d  429 (511)
                      |.+......++..... ...++.+|||+|||+|.+++.+++..  ..+|+++|+++++++.+++|+.   ..+++++++|
T Consensus        24 p~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d  101 (189)
T 3p9n_A           24 PTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRG--AASVLFVESDQRSAAVIARNIEALGLSGATLRRGA  101 (189)
T ss_dssp             --CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESC
T ss_pred             cCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCC--CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEcc
Confidence            5566666666655211 12578999999999999999887643  3689999999998888777754   4578899888


Q ss_pred             ccccc----cccchhhhhcccCCcEEEEEcCCccHHHHHHHH--HhCCCcEEEEh
Q psy7829         430 TIEII----PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAH--LVGPTGHVTGL  478 (511)
Q Consensus       430 ~~~~l----~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~--~l~~~g~v~~~  478 (511)
                      ..+..    +..+|.++.+.......    ...-.....+.+  .|+|+|.++..
T Consensus       102 ~~~~~~~~~~~~fD~i~~~~p~~~~~----~~~~~~l~~~~~~~~L~pgG~l~~~  152 (189)
T 3p9n_A          102 VAAVVAAGTTSPVDLVLADPPYNVDS----ADVDAILAALGTNGWTREGTVAVVE  152 (189)
T ss_dssp             HHHHHHHCCSSCCSEEEECCCTTSCH----HHHHHHHHHHHHSSSCCTTCEEEEE
T ss_pred             HHHHHhhccCCCccEEEECCCCCcch----hhHHHHHHHHHhcCccCCCeEEEEE
Confidence            76653    23455554432211100    001123345556  78999998765

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.87  E-value=5.4e-09  Score=96.35  Aligned_cols=113  Identities=24%  Similarity=0.356  Sum_probs=81.2

Q ss_pred             CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhC----CCcEEEEEcCCHHHHHHHHhhcc--------ccc
Q psy7829         355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVG----PTGHVTGLEHMMDIAIESIANIS--------TNH  422 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~----~~~~v~~id~~~~~~~~~~~~~~--------~~~  422 (511)
                      ..+...+.++..+...+.++.+|||||||+|+++..+++..+    |.++|+++|+++++++.+++++.        ..+
T Consensus        62 ~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~  141 (227)
T 2pbf_A           62 SAPHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDN  141 (227)
T ss_dssp             CCHHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTT
T ss_pred             CChHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCC
Confidence            356677777776222578899999999999999999999886    66799999999998888877654        356


Q ss_pred             cccccccccccc------cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         423 IDLIANETIEII------PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       423 v~~i~~d~~~~l------~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ++++.+|..+..      ...+|.++..           .....+...+.+.|+|+|.++..
T Consensus       142 v~~~~~d~~~~~~~~~~~~~~fD~I~~~-----------~~~~~~~~~~~~~LkpgG~lv~~  192 (227)
T 2pbf_A          142 FKIIHKNIYQVNEEEKKELGLFDAIHVG-----------ASASELPEILVDLLAENGKLIIP  192 (227)
T ss_dssp             EEEEECCGGGCCHHHHHHHCCEEEEEEC-----------SBBSSCCHHHHHHEEEEEEEEEE
T ss_pred             EEEEECChHhcccccCccCCCcCEEEEC-----------CchHHHHHHHHHhcCCCcEEEEE
Confidence            888887765533      1224433222           12223347778889999988766

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.87  E-value=1.2e-08  Score=90.92  Aligned_cols=128  Identities=13%  Similarity=0.194  Sum_probs=87.6

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c-ccccccccc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T-NHIDLIANE  429 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~-~~v~~i~~d  429 (511)
                      +........++..  +.+.++.+|||+|||+|..+..+++..   .+|+++|+++++++.+++++.   . .+++++.+|
T Consensus        16 ~~~~~~~~~~~~~--~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d   90 (192)
T 1l3i_A           16 PTAMEVRCLIMCL--AEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGD   90 (192)
T ss_dssp             CCCHHHHHHHHHH--HCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESC
T ss_pred             CChHHHHHHHHHh--cCCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecC
Confidence            4556666666665  678899999999999999999998765   799999999988888777654   3 467777776


Q ss_pred             cccccc--ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCC
Q psy7829         430 TIEIIP--HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIST  494 (511)
Q Consensus       430 ~~~~l~--~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~  494 (511)
                      ..+.++  ..+|.++.....        -....+...+.+.++|+|.++..   ..-.....+.+.+.|+
T Consensus        91 ~~~~~~~~~~~D~v~~~~~~--------~~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~  152 (192)
T 1l3i_A           91 APEALCKIPDIDIAVVGGSG--------GELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGF  152 (192)
T ss_dssp             HHHHHTTSCCEEEEEESCCT--------TCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred             HHHhcccCCCCCEEEECCch--------HHHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCC
Confidence            544332  123333221110        01234556677788999998775   5555566666777776

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.86  E-value=6.8e-09  Score=98.23  Aligned_cols=106  Identities=13%  Similarity=0.082  Sum_probs=79.8

Q ss_pred             cchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeE
Q psy7829         114 MNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGP-TGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVR  192 (511)
Q Consensus       114 ~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~  192 (511)
                      +..+.+...+++.+.  +.++.+|||||||+|.++..+++.... .++|+++|+++.+++.++++. .        ++++
T Consensus        25 L~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~--------~~v~   93 (279)
T 3uzu_A           25 LVDHGVIDAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-G--------ELLE   93 (279)
T ss_dssp             ECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-G--------GGEE
T ss_pred             cCCHHHHHHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-C--------CCcE
Confidence            446678888888886  778999999999999999999998743 356999999999999999984 2        2799


Q ss_pred             EEEccCCCCCCCC----C--CccEEEecCCCCchHHHHHhhccc
Q psy7829         193 IVEADAREGYLPE----A--PYDVIYYGGCVSEVPSRVLNQLKK  230 (511)
Q Consensus       193 ~~~~d~~~~~~~~----~--~fD~I~~~~~~~~~~~~~~~~Lkp  230 (511)
                      ++++|+.+...+.    .  ..+.|++|.++.--..-+.++|..
T Consensus        94 ~i~~D~~~~~~~~~~~~~~~~~~~vv~NlPY~iss~il~~ll~~  137 (279)
T 3uzu_A           94 LHAGDALTFDFGSIARPGDEPSLRIIGNLPYNISSPLLFHLMSF  137 (279)
T ss_dssp             EEESCGGGCCGGGGSCSSSSCCEEEEEECCHHHHHHHHHHHGGG
T ss_pred             EEECChhcCChhHhcccccCCceEEEEccCccccHHHHHHHHhc
Confidence            9999987643221    1  235688887764433445666653

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.86  E-value=1.1e-08  Score=95.61  Aligned_cols=109  Identities=18%  Similarity=0.243  Sum_probs=81.0

Q ss_pred             CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c-cccccccccc
Q psy7829         355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T-NHIDLIANET  430 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~-~~v~~i~~d~  430 (511)
                      ..+..+..++..  +.+.++.+|||+|||+|.++..+++. +  .+|+++|+++++++.++++..   . .+++++.+|.
T Consensus        75 ~~~~~~~~~~~~--~~~~~~~~vldiG~G~G~~~~~l~~~-~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~  149 (248)
T 2yvl_A           75 IYPKDSFYIALK--LNLNKEKRVLEFGTGSGALLAVLSEV-A--GEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDF  149 (248)
T ss_dssp             CCHHHHHHHHHH--TTCCTTCEEEEECCTTSHHHHHHHHH-S--SEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCT
T ss_pred             ccchhHHHHHHh--cCCCCCCEEEEeCCCccHHHHHHHHh-C--CEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcCh
Confidence            346777777776  78889999999999999999999988 3  899999999999888877753   2 5677777776


Q ss_pred             cccc-c-ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         431 IEII-P-HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       431 ~~~l-~-~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .+.. + ..+|.++.+..          .+......+.+.++|+|.++..
T Consensus       150 ~~~~~~~~~~D~v~~~~~----------~~~~~l~~~~~~L~~gG~l~~~  189 (248)
T 2yvl_A          150 KDAEVPEGIFHAAFVDVR----------EPWHYLEKVHKSLMEGAPVGFL  189 (248)
T ss_dssp             TTSCCCTTCBSEEEECSS----------CGGGGHHHHHHHBCTTCEEEEE
T ss_pred             hhcccCCCcccEEEECCc----------CHHHHHHHHHHHcCCCCEEEEE
Confidence            5543 2 23444443221          2334567778899999999887

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=98.86  E-value=3.1e-09  Score=97.67  Aligned_cols=107  Identities=20%  Similarity=0.317  Sum_probs=75.1

Q ss_pred             HHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cc-ccccccccccccccc
Q psy7829         361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TN-HIDLIANETIEIIPH  436 (511)
Q Consensus       361 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~-~v~~i~~d~~~~l~~  436 (511)
                      +.++.. .+...++.+|||||||+|+.++.+++.++++++|+++|+++++++.+++++.   .. +++++.+|..+.++.
T Consensus        47 ~~~l~~-l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  125 (223)
T 3duw_A           47 GKFLQL-LVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQ  125 (223)
T ss_dssp             HHHHHH-HHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHH
T ss_pred             HHHHHH-HHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHH
Confidence            344443 1345678999999999999999999987447899999999988888777654   33 488888887665432


Q ss_pred             -------cchhhhhcccCCcEEEEEcCC-ccHHHHHHHHHhCCCcEEEE
Q psy7829         437 -------ILDLCYLNLHRGAKVLEIGSG-SGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       437 -------~~d~i~~~l~~~~~vLD~~~g-~g~~~~~l~~~l~~~g~v~~  477 (511)
                             .+|.++.         |..+. ...+...+.+.|+|+|.++.
T Consensus       126 ~~~~~~~~fD~v~~---------d~~~~~~~~~l~~~~~~L~pgG~lv~  165 (223)
T 3duw_A          126 IENEKYEPFDFIFI---------DADKQNNPAYFEWALKLSRPGTVIIG  165 (223)
T ss_dssp             HHHTTCCCCSEEEE---------CSCGGGHHHHHHHHHHTCCTTCEEEE
T ss_pred             HHhcCCCCcCEEEE---------cCCcHHHHHHHHHHHHhcCCCcEEEE
Confidence                   2444432         22221 12345566788999998875

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.85  E-value=3.3e-09  Score=100.41  Aligned_cols=121  Identities=20%  Similarity=0.195  Sum_probs=85.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHhhcC-CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c-cc
Q psy7829         348 SAPDNGPSSERSIAHILDLCYLN-LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T-NH  422 (511)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~-~~  422 (511)
                      ..++.+|..+..+.+++..  +. +.++.+|||||||+|..+..+++.  +..+|+++|+++.+++.++++..   . ++
T Consensus        22 ~~~~~~~~~~~~~~~~l~~--l~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~   97 (267)
T 3kkz_A           22 NMERQGPGSPEVTLKALSF--IDNLTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSGLQNR   97 (267)
T ss_dssp             TSSCSSSCCHHHHHHHHTT--CCCCCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTTCTTT
T ss_pred             hccccCCCCHHHHHHHHHh--cccCCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCCCcC
Confidence            3445567788888888876  44 788999999999999999999977  34799999999999888877654   2 45


Q ss_pred             cccccccccccc--cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         423 IDLIANETIEII--PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       423 v~~i~~d~~~~l--~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ++++.+|..+..  +..+|.++....-..      .+...+...+.+.|+|+|.++..
T Consensus        98 v~~~~~d~~~~~~~~~~fD~i~~~~~~~~------~~~~~~l~~~~~~LkpgG~l~~~  149 (267)
T 3kkz_A           98 VTGIVGSMDDLPFRNEELDLIWSEGAIYN------IGFERGLNEWRKYLKKGGYLAVS  149 (267)
T ss_dssp             EEEEECCTTSCCCCTTCEEEEEESSCGGG------TCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cEEEEcChhhCCCCCCCEEEEEEcCCcee------cCHHHHHHHHHHHcCCCCEEEEE
Confidence            888888764431  234555443211100      13445567777888999988754

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.85  E-value=3.4e-09  Score=98.69  Aligned_cols=115  Identities=14%  Similarity=0.169  Sum_probs=80.1

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---cccccccccccccccc-----cccchhh
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETIEII-----PHILDLC  441 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~~~l-----~~~~d~i  441 (511)
                      .+.++.+|||+|||+|..++.+|... +..+|+++|+++++++.++++.   +..+++++++|..+..     +..+|.+
T Consensus        67 ~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V  145 (240)
T 1xdz_A           67 DFNQVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIV  145 (240)
T ss_dssp             CGGGCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred             ccCCCCEEEEecCCCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEE
Confidence            33578999999999999999999765 6689999999998777766554   4557888888765432     2345555


Q ss_pred             hhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh-----HHHHHHHHHHHHhcCC
Q psy7829         442 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL-----EHMMDIAIESIANIST  494 (511)
Q Consensus       442 ~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~-----~~ml~~a~~~~~~~~~  494 (511)
                      +...         ......+...+.+.|+|+|.++..     ..-++...+.+...|+
T Consensus       146 ~~~~---------~~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~  194 (240)
T 1xdz_A          146 TARA---------VARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGG  194 (240)
T ss_dssp             EEEC---------CSCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTE
T ss_pred             EEec---------cCCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCC
Confidence            4422         123344556667889999998866     3334455566666665

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.85  E-value=1.8e-09  Score=98.41  Aligned_cols=112  Identities=16%  Similarity=0.162  Sum_probs=77.4

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----cccccccccccccccc--cchhhhh
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETIEIIPH--ILDLCYL  443 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~~l~~--~~d~i~~  443 (511)
                      -++++.+|||||||+|++++.+++.. +..+|+|+|+++..++.+++|+..    ++++++.+|..+.+..  .+|.   
T Consensus        18 ~v~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~---   93 (230)
T 3lec_A           18 YVPKGARLLDVGSDHAYLPIFLLQMG-YCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDT---   93 (230)
T ss_dssp             TSCTTEEEEEETCSTTHHHHHHHHTT-CEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCE---
T ss_pred             hCCCCCEEEEECCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCE---
Confidence            55789999999999999999999874 668999999999888888877653    3478888887765543  2332   


Q ss_pred             cccCCcEEEEEcCCccH--HHH---HHHHHhCCCcEEEEh-HHHHHHHHHHHHhcCC
Q psy7829         444 NLHRGAKVLEIGSGSGY--LAT---LMAHLVGPTGHVTGL-EHMMDIAIESIANIST  494 (511)
Q Consensus       444 ~l~~~~~vLD~~~g~g~--~~~---~l~~~l~~~g~v~~~-~~ml~~a~~~~~~~~~  494 (511)
                             ++  -||.|.  +..   .....++++|+++.- ..-.+..++.+.++|+
T Consensus        94 -------Iv--iaGmGg~lI~~IL~~~~~~l~~~~~lIlqp~~~~~~lr~~L~~~Gf  141 (230)
T 3lec_A           94 -------IT--ICGMGGRLIADILNNDIDKLQHVKTLVLQPNNREDDLRKWLAANDF  141 (230)
T ss_dssp             -------EE--EEEECHHHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHHHTTE
T ss_pred             -------EE--EeCCchHHHHHHHHHHHHHhCcCCEEEEECCCChHHHHHHHHHCCC
Confidence                   22  245554  222   223456788887766 2224555666777665

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=98.85  E-value=3.4e-09  Score=99.16  Aligned_cols=108  Identities=19%  Similarity=0.308  Sum_probs=76.2

Q ss_pred             HHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c-cccccccccccccccc
Q psy7829         361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T-NHIDLIANETIEIIPH  436 (511)
Q Consensus       361 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~-~~v~~i~~d~~~~l~~  436 (511)
                      ..++.. .....++.+|||||||+|+.++.+|+.+++.++|+++|+++++++.+++++.   . ++++++.+|..+.++.
T Consensus        52 ~~~l~~-l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~  130 (248)
T 3tfw_A           52 GQFLAL-LVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLES  130 (248)
T ss_dssp             HHHHHH-HHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHT
T ss_pred             HHHHHH-HHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHh
Confidence            344443 1345678999999999999999999987547999999999999888877764   3 3688888887664432


Q ss_pred             -----cchhhhhcccCCcEEEEEcC-CccHHHHHHHHHhCCCcEEEEh
Q psy7829         437 -----ILDLCYLNLHRGAKVLEIGS-GSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       437 -----~~d~i~~~l~~~~~vLD~~~-g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                           .+|.++.         |..+ ....+...+.+.|+|||.++.-
T Consensus       131 ~~~~~~fD~V~~---------d~~~~~~~~~l~~~~~~LkpGG~lv~~  169 (248)
T 3tfw_A          131 LGECPAFDLIFI---------DADKPNNPHYLRWALRYSRPGTLIIGD  169 (248)
T ss_dssp             CCSCCCCSEEEE---------CSCGGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred             cCCCCCeEEEEE---------CCchHHHHHHHHHHHHhcCCCeEEEEe
Confidence                 3444433         2222 1223455667889999988753

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.84  E-value=8.9e-09  Score=93.15  Aligned_cols=110  Identities=14%  Similarity=0.053  Sum_probs=73.4

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---------------c
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---------------T  420 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---------------~  420 (511)
                      .+... ..+..  +.+.++.+|||+|||+|..+..+|+..   .+|+|+|+++++++.++++.+               .
T Consensus         8 ~~~l~-~~~~~--l~~~~~~~vLD~GCG~G~~~~~la~~g---~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~   81 (203)
T 1pjz_A            8 NKDLQ-QYWSS--LNVVPGARVLVPLCGKSQDMSWLSGQG---YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAA   81 (203)
T ss_dssp             THHHH-HHHHH--HCCCTTCEEEETTTCCSHHHHHHHHHC---CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEEC
T ss_pred             CHHHH-HHHHh--cccCCCCEEEEeCCCCcHhHHHHHHCC---CeEEEEeCCHHHHHHHHHHccCCcccccccccccccC
Confidence            33444 44444  567789999999999999999999873   799999999999999887754               3


Q ss_pred             ccccccccccccccc---ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcE
Q psy7829         421 NHIDLIANETIEIIP---HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGH  474 (511)
Q Consensus       421 ~~v~~i~~d~~~~l~---~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~  474 (511)
                      .+++++++|..+...   ..||.++....-.  .+. ......+...+++.|+|||.
T Consensus        82 ~~v~~~~~d~~~l~~~~~~~fD~v~~~~~l~--~l~-~~~~~~~l~~~~r~LkpgG~  135 (203)
T 1pjz_A           82 PGIEIWCGDFFALTARDIGHCAAFYDRAAMI--ALP-ADMRERYVQHLEALMPQACS  135 (203)
T ss_dssp             SSSEEEEECCSSSTHHHHHSEEEEEEESCGG--GSC-HHHHHHHHHHHHHHSCSEEE
T ss_pred             CccEEEECccccCCcccCCCEEEEEECcchh--hCC-HHHHHHHHHHHHHHcCCCcE
Confidence            578888888655432   3455443211000  000 00011235678889999998

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.84  E-value=2.6e-09  Score=98.78  Aligned_cols=98  Identities=18%  Similarity=0.234  Sum_probs=70.8

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-cccccccccccccc-----ccccchhhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNHIDLIANETIEI-----IPHILDLCY  442 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~~-----l~~~~d~i~  442 (511)
                      +.+.++.+|||+|||+|.++..+++.++ .++|+++|+++++++.+.++.. ..++.++.+|....     ....+|.++
T Consensus        70 ~~~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~  148 (230)
T 1fbn_A           70 MPIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY  148 (230)
T ss_dssp             CCCCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE
T ss_pred             cCCCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE
Confidence            5677899999999999999999999874 6899999999999988777654 25788877775431     112233332


Q ss_pred             hcccCCcEEEEEcCCc---cHHHHHHHHHhCCCcEEEE
Q psy7829         443 LNLHRGAKVLEIGSGS---GYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       443 ~~l~~~~~vLD~~~g~---g~~~~~l~~~l~~~g~v~~  477 (511)
                               .|+ ..+   -.+...+.+.|+|+|.++.
T Consensus       149 ---------~~~-~~~~~~~~~l~~~~~~LkpgG~l~i  176 (230)
T 1fbn_A          149 ---------EDV-AQPNQAEILIKNAKWFLKKGGYGMI  176 (230)
T ss_dssp             ---------ECC-CSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ---------Eec-CChhHHHHHHHHHHHhCCCCcEEEE
Confidence                     122 122   2335677788999999887

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.84  E-value=3.5e-09  Score=100.93  Aligned_cols=121  Identities=16%  Similarity=0.080  Sum_probs=86.7

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cc-cccccccc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TN-HIDLIANE  429 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~-~v~~i~~d  429 (511)
                      |.+...+..++..  +...++.+|||+|||+|.+++.+++.  +..+|+++|+++++++.+++|..   .. +++++++|
T Consensus       106 ~~te~lv~~~l~~--~~~~~~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D  181 (284)
T 1nv8_A          106 PETEELVELALEL--IRKYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGE  181 (284)
T ss_dssp             TTHHHHHHHHHHH--HHHHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESS
T ss_pred             hhHHHHHHHHHHH--hcccCCCEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECc
Confidence            5566777666665  33346789999999999999999988  56899999999988888777754   33 38899998


Q ss_pred             ccccccccc---hhhhhcccCCc--------------EEEEEcCCccHHHHHHH-HHhCCCcEEEEh
Q psy7829         430 TIEIIPHIL---DLCYLNLHRGA--------------KVLEIGSGSGYLATLMA-HLVGPTGHVTGL  478 (511)
Q Consensus       430 ~~~~l~~~~---d~i~~~l~~~~--------------~vLD~~~g~g~~~~~l~-~~l~~~g~v~~~  478 (511)
                      ..+.++..+   |.++.+.+...              ..++-++..-.+...+. +.++|+|.++..
T Consensus       182 ~~~~~~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e  248 (284)
T 1nv8_A          182 FLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME  248 (284)
T ss_dssp             TTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred             chhhcccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence            877665667   87777632110              11222222235667777 888999998765

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.84  E-value=2.2e-09  Score=97.28  Aligned_cols=128  Identities=16%  Similarity=0.081  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccccccc
Q psy7829         357 ERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEI  433 (511)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~  433 (511)
                      ......++......+.++.+|||+|||+|.++..+++.  +..+|+++|+++.+++.+++++.   ..+++++.+|..+.
T Consensus        44 ~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~  121 (205)
T 3grz_A           44 HQTTQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKL--GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD  121 (205)
T ss_dssp             HHHHHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT
T ss_pred             CccHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc
Confidence            34444455542223678999999999999999998864  33699999999999888877754   44488888887665


Q ss_pred             ccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCC
Q psy7829         434 IPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIST  494 (511)
Q Consensus       434 l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~  494 (511)
                      .+..+|.++.+.....        ...+...+.+.++|+|.++..   ..-.+...+.+.+.|+
T Consensus       122 ~~~~fD~i~~~~~~~~--------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf  177 (205)
T 3grz_A          122 VDGKFDLIVANILAEI--------LLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSF  177 (205)
T ss_dssp             CCSCEEEEEEESCHHH--------HHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTE
T ss_pred             CCCCceEEEECCcHHH--------HHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCC
Confidence            5555665544321100        112234455678999998764   3334445556666665

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=98.84  E-value=3.1e-09  Score=99.76  Aligned_cols=113  Identities=24%  Similarity=0.235  Sum_probs=77.0

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccc--cccccccccccc-cccchhhhhcccC
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH--IDLIANETIEII-PHILDLCYLNLHR  447 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~--v~~i~~d~~~~l-~~~~d~i~~~l~~  447 (511)
                      +.++.+|||+|||+|.+++.+++..   .+|+++|+++.+++.+++|...++  ++++.++..+.+ +..+|.++.+...
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~la~~g---~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~  194 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEKLG---GKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYA  194 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCH
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcH
Confidence            6789999999999999999988753   499999999988888887765443  666666654432 2334444433211


Q ss_pred             CcEEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCC
Q psy7829         448 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIST  494 (511)
Q Consensus       448 ~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~  494 (511)
                      +        ....+...+.+.++|+|.++..   ..-.+...+.+++.|+
T Consensus       195 ~--------~~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf  236 (254)
T 2nxc_A          195 E--------LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGF  236 (254)
T ss_dssp             H--------HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred             H--------HHHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCC
Confidence            0        1123456677889999998764   3344555566666776

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=98.83  E-value=6.2e-10  Score=103.68  Aligned_cols=100  Identities=22%  Similarity=0.304  Sum_probs=71.2

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---cc-ccccccccccccccc--------c
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---ST-NHIDLIANETIEIIP--------H  436 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~-~~v~~i~~d~~~~l~--------~  436 (511)
                      +...++.+|||||||+|+.++.+|+.++++++|+++|+++++++.+++++   +. ++++++.+|+.+.++        .
T Consensus        56 ~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~  135 (242)
T 3r3h_A           56 IRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEH  135 (242)
T ss_dssp             HHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSS
T ss_pred             HhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCC
Confidence            34567889999999999999999998855799999999976666555544   44 478999988766543        3


Q ss_pred             cchhhhhcccCCcEEEEEcC-CccHHHHHHHHHhCCCcEEEE
Q psy7829         437 ILDLCYLNLHRGAKVLEIGS-GSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       437 ~~d~i~~~l~~~~~vLD~~~-g~g~~~~~l~~~l~~~g~v~~  477 (511)
                      .+|.++.+         ... ..-.+...+.+.|+|||.++.
T Consensus       136 ~fD~V~~d---------~~~~~~~~~l~~~~~~LkpGG~lv~  168 (242)
T 3r3h_A          136 QFDFIFID---------ADKTNYLNYYELALKLVTPKGLIAI  168 (242)
T ss_dssp             CEEEEEEE---------SCGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred             CEeEEEEc---------CChHHhHHHHHHHHHhcCCCeEEEE
Confidence            35544432         221 122334567788999998876

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.83  E-value=5.4e-09  Score=96.38  Aligned_cols=113  Identities=21%  Similarity=0.351  Sum_probs=80.8

Q ss_pred             CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCC-----CcEEEEEcCCHHHHHHHHhhcc--------cc
Q psy7829         355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGP-----TGHVTGLEHMMDIAIESIANIS--------TN  421 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~-----~~~v~~id~~~~~~~~~~~~~~--------~~  421 (511)
                      ..|...+.+++.+...+.++.+|||+|||+|+++..+++..+.     .++|+++|+++++++.+++++.        ..
T Consensus        66 ~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~  145 (227)
T 1r18_A           66 SAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSG  145 (227)
T ss_dssp             CCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCC
Confidence            4667778888872225788999999999999999999987742     3599999999999888877654        35


Q ss_pred             cccccccccccccc--ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         422 HIDLIANETIEIIP--HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       422 ~v~~i~~d~~~~l~--~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +++++.+|.....+  ..+|.++.           .+....+...+.+.|+|+|.++..
T Consensus       146 ~v~~~~~d~~~~~~~~~~fD~I~~-----------~~~~~~~~~~~~~~LkpgG~lvi~  193 (227)
T 1r18_A          146 QLLIVEGDGRKGYPPNAPYNAIHV-----------GAAAPDTPTELINQLASGGRLIVP  193 (227)
T ss_dssp             SEEEEESCGGGCCGGGCSEEEEEE-----------CSCBSSCCHHHHHTEEEEEEEEEE
T ss_pred             ceEEEECCcccCCCcCCCccEEEE-----------CCchHHHHHHHHHHhcCCCEEEEE
Confidence            68888777654332  23443322           222233447788889999988765

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=98.83  E-value=7.7e-09  Score=95.47  Aligned_cols=124  Identities=23%  Similarity=0.282  Sum_probs=83.8

Q ss_pred             cCCCCCCEEEEEecc-ccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc--ccccccccc--cc-cccccchhhh
Q psy7829         369 LNLHRGAKVLEIGSG-SGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN--HIDLIANET--IE-IIPHILDLCY  442 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~--~v~~i~~d~--~~-~l~~~~d~i~  442 (511)
                      ..++++.+|||+||| +|.+++.+++..+  .+|+++|+++++++.+++|+...  +++++.+|.  .. ..+..+|.++
T Consensus        51 ~~~~~~~~vLDlG~G~~G~~~~~la~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~  128 (230)
T 3evz_A           51 TFLRGGEVALEIGTGHTAMMALMAEKFFN--CKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIF  128 (230)
T ss_dssp             TTCCSSCEEEEECCTTTCHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEE
T ss_pred             hhcCCCCEEEEcCCCHHHHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEE
Confidence            456789999999999 9999999998863  89999999999998888776533  678888874  22 2235577776


Q ss_pred             hcccCCcE--------EEEEcCC------ccHHHHHHHHHhCCCcEEEEh----HHHHHHHHHHHHhcCC
Q psy7829         443 LNLHRGAK--------VLEIGSG------SGYLATLMAHLVGPTGHVTGL----EHMMDIAIESIANIST  494 (511)
Q Consensus       443 ~~l~~~~~--------vLD~~~g------~g~~~~~l~~~l~~~g~v~~~----~~ml~~a~~~~~~~~~  494 (511)
                      .+......        ...+..+      .-.+...+.+.|+|+|.++.+    ..-.+...+.+.+.|+
T Consensus       129 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~  198 (230)
T 3evz_A          129 SAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGY  198 (230)
T ss_dssp             ECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             ECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCC
Confidence            65332110        0001111      123445566778999998875    4555666677777776

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.83  E-value=1e-08  Score=106.41  Aligned_cols=122  Identities=15%  Similarity=0.064  Sum_probs=91.6

Q ss_pred             CcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCC-----------------CceEEEEeCCHHHHHH
Q psy7829         111 AGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGP-----------------TGKVIGVEHIPELIEA  173 (511)
Q Consensus       111 ~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~-----------------~~~v~~iD~~~~~~~~  173 (511)
                      |...+.+.+...+++.+.  ..++.+|||.|||+|.+...+++.+..                 ..+++|+|+++.+++.
T Consensus       149 G~fyTP~~iv~~mv~~l~--p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~l  226 (541)
T 2ar0_A          149 GQYFTPRPLIKTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL  226 (541)
T ss_dssp             -CCCCCHHHHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHH
T ss_pred             CeeeCCHHHHHHHHHHhc--cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHH
Confidence            444444446666777775  567889999999999999888876521                 1369999999999999


Q ss_pred             HHHHHhccCCCcCCCCC-----eEEEEccCCCCC-CCCCCccEEEecCCCC--------------------chHHHHHhh
Q psy7829         174 SLRNISKGNKDLLDSGR-----VRIVEADAREGY-LPEAPYDVIYYGGCVS--------------------EVPSRVLNQ  227 (511)
Q Consensus       174 a~~~~~~~~~~~~~~~~-----v~~~~~d~~~~~-~~~~~fD~I~~~~~~~--------------------~~~~~~~~~  227 (511)
                      |+.++...+     ..+     +.+.++|..... .....||+|++++|+.                    .+...+.+.
T Consensus       227 A~~nl~l~g-----i~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~  301 (541)
T 2ar0_A          227 ALMNCLLHD-----IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIET  301 (541)
T ss_dssp             HHHHHHTTT-----CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhC-----CCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHH
Confidence            999987654     222     788999976432 2236799999998873                    144778999


Q ss_pred             cccCcEEEEEEc
Q psy7829         228 LKKGGRILAPIG  239 (511)
Q Consensus       228 LkpgG~l~~~~~  239 (511)
                      |||||++++.+.
T Consensus       302 Lk~gGr~a~V~p  313 (541)
T 2ar0_A          302 LHPGGRAAVVVP  313 (541)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             hCCCCEEEEEec
Confidence            999999988664

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.82  E-value=1.4e-09  Score=96.07  Aligned_cols=81  Identities=17%  Similarity=0.219  Sum_probs=67.5

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC---CCCC
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL---PEAP  207 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~  207 (511)
                      +++|.+|||+|||.                | ++|+|+.|++.|+++...         +++++++|+.+...   ++++
T Consensus        10 ~~~g~~vL~~~~g~----------------v-~vD~s~~ml~~a~~~~~~---------~~~~~~~d~~~~~~~~~~~~~   63 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS----------------S-PVEALKGLVDKLQALTGN---------EGRVSVENIKQLLQSAHKESS   63 (176)
T ss_dssp             CCTTSEEEEEECTT----------------S-CHHHHHHHHHHHHHHTTT---------TSEEEEEEGGGGGGGCCCSSC
T ss_pred             CCCCCEEEEecCCc----------------e-eeeCCHHHHHHHHHhccc---------CcEEEEechhcCccccCCCCC
Confidence            67899999999986                1 389999999999988543         58999999876443   4578


Q ss_pred             ccEEEecCCCCch-------HHHHHhhcccCcEEEEE
Q psy7829         208 YDVIYYGGCVSEV-------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       208 fD~I~~~~~~~~~-------~~~~~~~LkpgG~l~~~  237 (511)
                      ||+|++..+++++       .+++++.|||||++++.
T Consensus        64 fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~  100 (176)
T 2ld4_A           64 FDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLK  100 (176)
T ss_dssp             EEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             EeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEE
Confidence            9999998887766       48899999999999983

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.82  E-value=1.1e-08  Score=94.12  Aligned_cols=113  Identities=27%  Similarity=0.436  Sum_probs=80.0

Q ss_pred             CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc--------ccccccc
Q psy7829         355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS--------TNHIDLI  426 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~--------~~~v~~i  426 (511)
                      ..+...+.++......+.++.+|||+|||+|+.+..+++.+++.++|+++|+++.+++.+++++.        ..+++++
T Consensus        59 ~~p~~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~  138 (226)
T 1i1n_A           59 SAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLV  138 (226)
T ss_dssp             CCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEE
T ss_pred             cCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEE
Confidence            35677777777622237889999999999999999999988777899999999999888777654        3467777


Q ss_pred             cccccccc--cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         427 ANETIEII--PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       427 ~~d~~~~l--~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .+|.....  ...+|.++..           ...-.+...+.+.|+|+|.++..
T Consensus       139 ~~d~~~~~~~~~~fD~i~~~-----------~~~~~~~~~~~~~LkpgG~lv~~  181 (226)
T 1i1n_A          139 VGDGRMGYAEEAPYDAIHVG-----------AAAPVVPQALIDQLKPGGRLILP  181 (226)
T ss_dssp             ESCGGGCCGGGCCEEEEEEC-----------SBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             ECCcccCcccCCCcCEEEEC-----------CchHHHHHHHHHhcCCCcEEEEE
Confidence            77754322  1223433221           11123346778889999988765

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=98.81  E-value=4.7e-09  Score=98.91  Aligned_cols=124  Identities=17%  Similarity=0.181  Sum_probs=82.4

Q ss_pred             cCCC-CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----cccccccccccccc----cccch
Q psy7829         369 LNLH-RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETIEII----PHILD  439 (511)
Q Consensus       369 ~~~~-~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~~l----~~~~d  439 (511)
                      +.++ ++.+|||+|||+|..++.+++.. + .+|+++|+++++++.+++|+..    .+++++++|..+..    +..+|
T Consensus        44 ~~~~~~~~~vLDlG~G~G~~~~~la~~~-~-~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD  121 (259)
T 3lpm_A           44 SYLPIRKGKIIDLCSGNGIIPLLLSTRT-K-AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERAD  121 (259)
T ss_dssp             CCCCSSCCEEEETTCTTTHHHHHHHTTC-C-CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEE
T ss_pred             hcCCCCCCEEEEcCCchhHHHHHHHHhc-C-CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCcc
Confidence            6777 89999999999999999999875 3 4999999999999888877653    24788888876654    34577


Q ss_pred             hhhhcccCCcE----EEE------E-----cCCccHHHHHHHHHhCCCcEEEEh--HHHHHHHHHHHHhcCC
Q psy7829         440 LCYLNLHRGAK----VLE------I-----GSGSGYLATLMAHLVGPTGHVTGL--EHMMDIAIESIANIST  494 (511)
Q Consensus       440 ~i~~~l~~~~~----vLD------~-----~~g~g~~~~~l~~~l~~~g~v~~~--~~ml~~a~~~~~~~~~  494 (511)
                      .++.+.+-...    ...      +     .+....+...+.+.|+|+|.++.+  ..-+....+.+.+.++
T Consensus       122 ~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~  193 (259)
T 3lpm_A          122 IVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRL  193 (259)
T ss_dssp             EEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTE
T ss_pred             EEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCC
Confidence            77665432111    000      0     011123556777889999998877  2333333344444444

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=98.81  E-value=1.1e-08  Score=96.43  Aligned_cols=109  Identities=11%  Similarity=0.112  Sum_probs=79.0

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc---c----ccccccccccccc-------
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST---N----HIDLIANETIEII-------  434 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~---~----~v~~i~~d~~~~l-------  434 (511)
                      +...++.+|||+|||+|.+++.+++.. |..+|+++|+++++++.+++|+..   +    +++++++|..+..       
T Consensus        32 ~~~~~~~~VLDlG~G~G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~  110 (260)
T 2ozv_A           32 VADDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAG  110 (260)
T ss_dssp             CCCCSCEEEEECCSSSSHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTT
T ss_pred             hcccCCCEEEEeCChHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhc
Confidence            567788999999999999999999987 568999999999999998888765   3    4778888866542       


Q ss_pred             --cccchhhhhcccCCcE------------EE-EEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         435 --PHILDLCYLNLHRGAK------------VL-EIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       435 --~~~~d~i~~~l~~~~~------------vL-D~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                        +..+|.++.+.+....            .. ...++.-.+...+.+.|+|+|.++.+
T Consensus       111 ~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~  169 (260)
T 2ozv_A          111 LPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI  169 (260)
T ss_dssp             CCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE
Confidence              3457777776432211            00 11123445566677889999999877

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=98.81  E-value=9.1e-09  Score=90.06  Aligned_cols=116  Identities=16%  Similarity=0.092  Sum_probs=77.9

Q ss_pred             CCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc--ccccccccc
Q psy7829         353 GPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN--HIDLIANET  430 (511)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~--~v~~i~~d~  430 (511)
                      .|.+......++......++++.+|||+|||+|.++..+++..   .+|+++|+++++++.+++++...  +++++++|.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~   97 (171)
T 1ws6_A           21 RPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEG---WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPV   97 (171)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTT---CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCH
T ss_pred             CCCHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccH
Confidence            3556666666666522224478999999999999999999875   34999999999998887776532  688888886


Q ss_pred             cccccc------cchhhhhcccCCcEEEEEcCCccHHHHHHH--HHhCCCcEEEEh
Q psy7829         431 IEIIPH------ILDLCYLNLHRGAKVLEIGSGSGYLATLMA--HLVGPTGHVTGL  478 (511)
Q Consensus       431 ~~~l~~------~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~--~~l~~~g~v~~~  478 (511)
                      .+.++.      .+|.++.+..-.       ...-.....+.  +.++|+|.++..
T Consensus        98 ~~~~~~~~~~~~~~D~i~~~~~~~-------~~~~~~~~~~~~~~~L~~gG~~~~~  146 (171)
T 1ws6_A           98 EVFLPEAKAQGERFTVAFMAPPYA-------MDLAALFGELLASGLVEAGGLYVLQ  146 (171)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCCTT-------SCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred             HHHHHhhhccCCceEEEEECCCCc-------hhHHHHHHHHHhhcccCCCcEEEEE
Confidence            654331      355554442211       11223445555  668999988765

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.81  E-value=2.7e-09  Score=98.00  Aligned_cols=113  Identities=13%  Similarity=0.094  Sum_probs=77.1

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cc-ccccccccccccccc--cchhhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TN-HIDLIANETIEIIPH--ILDLCY  442 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~-~v~~i~~d~~~~l~~--~~d~i~  442 (511)
                      --++++.+|||||||+|++++.+|+.. +..+|+|+|+++..++.|++|+.   .. +++++.+|..+.+..  .+|.  
T Consensus        17 ~~v~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~--   93 (244)
T 3gnl_A           17 SYITKNERIADIGSDHAYLPCFAVKNQ-TASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDT--   93 (244)
T ss_dssp             TTCCSSEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCE--
T ss_pred             HhCCCCCEEEEECCccHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccE--
Confidence            356789999999999999999999874 66799999999988888887765   32 378888887765542  1332  


Q ss_pred             hcccCCcEEEEEcCCccH--HHH---HHHHHhCCCcEEEEh-HHHHHHHHHHHHhcCC
Q psy7829         443 LNLHRGAKVLEIGSGSGY--LAT---LMAHLVGPTGHVTGL-EHMMDIAIESIANIST  494 (511)
Q Consensus       443 ~~l~~~~~vLD~~~g~g~--~~~---~l~~~l~~~g~v~~~-~~ml~~a~~~~~~~~~  494 (511)
                              |+  -||.|.  +..   .....++++++++.- ..-.+..++.+.+.|+
T Consensus        94 --------Iv--iagmGg~lI~~IL~~~~~~L~~~~~lIlq~~~~~~~lr~~L~~~Gf  141 (244)
T 3gnl_A           94 --------IV--IAGMGGTLIRTILEEGAAKLAGVTKLILQPNIAAWQLREWSEQNNW  141 (244)
T ss_dssp             --------EE--EEEECHHHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHHHHTE
T ss_pred             --------EE--EeCCchHHHHHHHHHHHHHhCCCCEEEEEcCCChHHHHHHHHHCCC
Confidence                    22  144443  222   223456777887766 2234455666666665

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.80  E-value=6.1e-09  Score=96.69  Aligned_cols=99  Identities=18%  Similarity=0.243  Sum_probs=71.8

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c-ccccccccccccccc---------c
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T-NHIDLIANETIEIIP---------H  436 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~-~~v~~i~~d~~~~l~---------~  436 (511)
                      ...++.+|||||||+|+.++.+++.++++++|+++|+++++++.+++++.   . ++++++.+|+.+.++         .
T Consensus        67 ~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~  146 (237)
T 3c3y_A           67 KLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEG  146 (237)
T ss_dssp             HHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTT
T ss_pred             HhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCC
Confidence            44578899999999999999999988557999999999998888877764   3 358888888766543         2


Q ss_pred             cchhhhhcccCCcEEEEEcC-CccHHHHHHHHHhCCCcEEEE
Q psy7829         437 ILDLCYLNLHRGAKVLEIGS-GSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       437 ~~d~i~~~l~~~~~vLD~~~-g~g~~~~~l~~~l~~~g~v~~  477 (511)
                      .+|.++.         |..+ ..-.+...+.+.|+|||.++.
T Consensus       147 ~fD~I~~---------d~~~~~~~~~l~~~~~~L~pGG~lv~  179 (237)
T 3c3y_A          147 SYDFGFV---------DADKPNYIKYHERLMKLVKVGGIVAY  179 (237)
T ss_dssp             CEEEEEE---------CSCGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred             CcCEEEE---------CCchHHHHHHHHHHHHhcCCCeEEEE
Confidence            3444433         2222 122344566788899998875

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=98.80  E-value=2.3e-08  Score=95.08  Aligned_cols=88  Identities=18%  Similarity=0.342  Sum_probs=67.9

Q ss_pred             CCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---ccccccccccc
Q psy7829         353 GPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANE  429 (511)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d  429 (511)
                      .|.+...+..++..  +. .++.+|||+|||+|..++.+++.. +..+|+++|+++++++.+++|.   +..+++++.+|
T Consensus        92 r~~te~l~~~~l~~--~~-~~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d  167 (276)
T 2b3t_A           92 RPDTECLVEQALAR--LP-EQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSD  167 (276)
T ss_dssp             CTTHHHHHHHHHHH--SC-SSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCS
T ss_pred             CchHHHHHHHHHHh--cc-cCCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcc
Confidence            35566777777665  44 678899999999999999999887 6689999999998888777665   44578888888


Q ss_pred             ccccc-cccchhhhhc
Q psy7829         430 TIEII-PHILDLCYLN  444 (511)
Q Consensus       430 ~~~~l-~~~~d~i~~~  444 (511)
                      ..+.+ +..+|.++.+
T Consensus       168 ~~~~~~~~~fD~Iv~n  183 (276)
T 2b3t_A          168 WFSALAGQQFAMIVSN  183 (276)
T ss_dssp             TTGGGTTCCEEEEEEC
T ss_pred             hhhhcccCCccEEEEC
Confidence            76654 3456766655

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.80  E-value=4.2e-09  Score=96.93  Aligned_cols=100  Identities=17%  Similarity=0.216  Sum_probs=71.7

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c-ccccccccccccccc--------c
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T-NHIDLIANETIEIIP--------H  436 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~-~~v~~i~~d~~~~l~--------~  436 (511)
                      +...++.+|||+|||+|+.++.+++.+++.++|+++|+++++++.+++++.   . ++++++.+|..+.++        .
T Consensus        60 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  139 (225)
T 3tr6_A           60 VKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAW  139 (225)
T ss_dssp             HHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTT
T ss_pred             HHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCC
Confidence            344578899999999999999999887547999999999998888877764   3 348888888755543        2


Q ss_pred             cchhhhhcccCCcEEEEEcC-CccHHHHHHHHHhCCCcEEEE
Q psy7829         437 ILDLCYLNLHRGAKVLEIGS-GSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       437 ~~d~i~~~l~~~~~vLD~~~-g~g~~~~~l~~~l~~~g~v~~  477 (511)
                      .+|.++.+         ... ....+...+.+.|+|+|.++.
T Consensus       140 ~fD~v~~~---------~~~~~~~~~l~~~~~~L~pgG~lv~  172 (225)
T 3tr6_A          140 QYDLIYID---------ADKANTDLYYEESLKLLREGGLIAV  172 (225)
T ss_dssp             CEEEEEEC---------SCGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred             CccEEEEC---------CCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            34443321         111 123345667788999999876

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=98.80  E-value=2e-09  Score=98.11  Aligned_cols=88  Identities=24%  Similarity=0.306  Sum_probs=53.5

Q ss_pred             CCHHHHHHHHHHhhcCC-CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc--cccccccccc
Q psy7829         355 SSERSIAHILDLCYLNL-HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN--HIDLIANETI  431 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~--~v~~i~~d~~  431 (511)
                      .+...+..++..  +.. .++.+|||+|||+|..+..+++.. ++.+|+++|+++.+++.+++++...  +++++++|..
T Consensus        13 ~~~~~~~~~~~~--l~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~   89 (215)
T 4dzr_A           13 DTEVLVEEAIRF--LKRMPSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGI   89 (215)
T ss_dssp             HHHHHHHHHHHH--HTTCCTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC-------------------CCHHHHH
T ss_pred             cHHHHHHHHHHH--hhhcCCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchH
Confidence            344555555555  443 688999999999999999999886 6689999999999998888776643  5788888765


Q ss_pred             cccc------ccchhhhhcc
Q psy7829         432 EIIP------HILDLCYLNL  445 (511)
Q Consensus       432 ~~l~------~~~d~i~~~l  445 (511)
                      +.++      ..+|.++.+.
T Consensus        90 ~~~~~~~~~~~~fD~i~~np  109 (215)
T 4dzr_A           90 EWLIERAERGRPWHAIVSNP  109 (215)
T ss_dssp             HHHHHHHHTTCCBSEEEECC
T ss_pred             hhhhhhhhccCcccEEEECC
Confidence            5443      4677776653

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.80  E-value=5e-09  Score=97.46  Aligned_cols=111  Identities=17%  Similarity=0.211  Sum_probs=77.1

Q ss_pred             CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cc-ccccccccc
Q psy7829         355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TN-HIDLIANET  430 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~-~v~~i~~d~  430 (511)
                      ..+.....+..+  +...++.+|||||||+|+.+..+++.+++.++|+++|+++++++.+++++.   .. +++++.+|.
T Consensus        44 ~~~~~~~~l~~l--~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~  121 (239)
T 2hnk_A           44 ISPEEGQFLNIL--TKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSA  121 (239)
T ss_dssp             CCHHHHHHHHHH--HHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             cCHHHHHHHHHH--HHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCH
Confidence            355555555554  455688999999999999999999987546899999999999888877753   33 378888876


Q ss_pred             ccccc-------------------ccchhhhhcccCCcEEEEEcCCcc---HHHHHHHHHhCCCcEEEEh
Q psy7829         431 IEIIP-------------------HILDLCYLNLHRGAKVLEIGSGSG---YLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       431 ~~~l~-------------------~~~d~i~~~l~~~~~vLD~~~g~g---~~~~~l~~~l~~~g~v~~~  478 (511)
                      .+.++                   ..+|.++.           ..+..   .+...+.+.++|+|.++..
T Consensus       122 ~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~-----------~~~~~~~~~~l~~~~~~L~pgG~lv~~  180 (239)
T 2hnk_A          122 LETLQVLIDSKSAPSWASDFAFGPSSIDLFFL-----------DADKENYPNYYPLILKLLKPGGLLIAD  180 (239)
T ss_dssp             HHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEE-----------CSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHhhcccccccccccCCCCCcCEEEE-----------eCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            55433                   12332221           12222   3346677889999998764

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.79  E-value=3.8e-09  Score=97.93  Aligned_cols=109  Identities=14%  Similarity=0.135  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHH---hCCCcEEEEEcCCHHHHHHHHhhcccccccccccccccc
Q psy7829         357 ERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHL---VGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEI  433 (511)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~---~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~  433 (511)
                      +.....+..+  +...++.+|||||||+|+.++.+|+.   ++++++|+++|+++++++.++ +. ..+++++++|..+.
T Consensus        67 p~~~~~l~~~--l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~-~~-~~~v~~~~gD~~~~  142 (236)
T 2bm8_A           67 PDTQAVYHDM--LWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-SD-MENITLHQGDCSDL  142 (236)
T ss_dssp             HHHHHHHHHH--HHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-GG-CTTEEEEECCSSCS
T ss_pred             HHHHHHHHHH--HHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh-cc-CCceEEEECcchhH
Confidence            5555555554  33446789999999999999999987   456799999999988877665 22 36789998887653


Q ss_pred             --cc---c-cchhhhhcccCCcEEEEEcC-CccHHHHHHHH-HhCCCcEEEEh
Q psy7829         434 --IP---H-ILDLCYLNLHRGAKVLEIGS-GSGYLATLMAH-LVGPTGHVTGL  478 (511)
Q Consensus       434 --l~---~-~~d~i~~~l~~~~~vLD~~~-g~g~~~~~l~~-~l~~~g~v~~~  478 (511)
                        ++   . .+|.++.         |.+- ..-.....+.+ .|+|||.++..
T Consensus       143 ~~l~~~~~~~fD~I~~---------d~~~~~~~~~l~~~~r~~LkpGG~lv~~  186 (236)
T 2bm8_A          143 TTFEHLREMAHPLIFI---------DNAHANTFNIMKWAVDHLLEEGDYFIIE  186 (236)
T ss_dssp             GGGGGGSSSCSSEEEE---------ESSCSSHHHHHHHHHHHTCCTTCEEEEC
T ss_pred             HHHHhhccCCCCEEEE---------CCchHhHHHHHHHHHHhhCCCCCEEEEE
Confidence              22   1 2343332         2221 11223344554 89999999883

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.79  E-value=9.2e-09  Score=99.24  Aligned_cols=112  Identities=18%  Similarity=0.080  Sum_probs=77.4

Q ss_pred             HHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc---c-ccccccccccccccc
Q psy7829         361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST---N-HIDLIANETIEIIPH  436 (511)
Q Consensus       361 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~---~-~v~~i~~d~~~~l~~  436 (511)
                      ..++..  +.++++.+|||||||+|.++..+++..+  .+|+++|+++++++.++++...   . +++++.+|..+. +.
T Consensus        62 ~~~~~~--~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~  136 (302)
T 3hem_A           62 KLALDK--LNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DE  136 (302)
T ss_dssp             HHHHHT--TCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CC
T ss_pred             HHHHHH--cCCCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CC
Confidence            344554  6778999999999999999999999875  8999999999999888777542   2 678888887654 55


Q ss_pred             cchhhhhcccCCcEEEEEcC--Cc---cHHHHHHHHHhCCCcEEEEh
Q psy7829         437 ILDLCYLNLHRGAKVLEIGS--GS---GYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       437 ~~d~i~~~l~~~~~vLD~~~--g~---g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .+|.++....-. .+.|...  |.   ..+...+.+.|+|+|.++..
T Consensus       137 ~fD~v~~~~~~~-~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  182 (302)
T 3hem_A          137 PVDRIVSLGAFE-HFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH  182 (302)
T ss_dssp             CCSEEEEESCGG-GTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEE
T ss_pred             CccEEEEcchHH-hcCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence            566554321000 0000000  11   24566778889999998765

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.79  E-value=8.6e-09  Score=96.40  Aligned_cols=101  Identities=15%  Similarity=0.034  Sum_probs=68.1

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc--------------------cccccccccc
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS--------------------TNHIDLIANE  429 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~--------------------~~~v~~i~~d  429 (511)
                      ...++.+|||+|||+|..+..||+..   .+|+|||+++.+++.++++.+                    ..+++++++|
T Consensus        65 ~~~~~~~vLD~GCG~G~~~~~La~~G---~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D  141 (252)
T 2gb4_A           65 KGQSGLRVFFPLCGKAIEMKWFADRG---HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCS  141 (252)
T ss_dssp             TTCCSCEEEETTCTTCTHHHHHHHTT---CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESC
T ss_pred             cCCCCCeEEEeCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECc
Confidence            34678999999999999999999764   699999999999998876553                    2568888887


Q ss_pred             cccccc---ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEE
Q psy7829         430 TIEIIP---HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVT  476 (511)
Q Consensus       430 ~~~~l~---~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~  476 (511)
                      ..+...   ..||.++....-..  +. ......+...+.+.|+|||.++
T Consensus       142 ~~~l~~~~~~~FD~V~~~~~l~~--l~-~~~~~~~l~~~~~~LkpGG~l~  188 (252)
T 2gb4_A          142 IFDLPRANIGKFDRIWDRGALVA--IN-PGDHDRYADIILSLLRKEFQYL  188 (252)
T ss_dssp             TTTGGGGCCCCEEEEEESSSTTT--SC-GGGHHHHHHHHHHTEEEEEEEE
T ss_pred             cccCCcccCCCEEEEEEhhhhhh--CC-HHHHHHHHHHHHHHcCCCeEEE
Confidence            655432   23554432110000  00 0001234567788899999975

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.78  E-value=1.2e-08  Score=100.78  Aligned_cols=124  Identities=19%  Similarity=0.123  Sum_probs=88.7

Q ss_pred             CCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccc
Q psy7829         353 GPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANE  429 (511)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d  429 (511)
                      .|..+..++.++.+  +...++.+|||+|||+|.+++.+|+..+++.+|+|+|+++++++.+++|+.   ..+++++++|
T Consensus       185 a~l~~~la~~l~~~--~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D  262 (354)
T 3tma_A          185 GSLTPVLAQALLRL--ADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRAD  262 (354)
T ss_dssp             CSCCHHHHHHHHHH--TTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECC
T ss_pred             CCcCHHHHHHHHHH--hCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCC
Confidence            35667777777776  677889999999999999999999987667899999999999888877765   3368888888


Q ss_pred             cccccc--ccchhhhhcccCCcEEEEEcCC---ccHHHHHHHHHhCCCcEEEEh
Q psy7829         430 TIEIIP--HILDLCYLNLHRGAKVLEIGSG---SGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       430 ~~~~l~--~~~d~i~~~l~~~~~vLD~~~g---~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..+...  ..+|.++.|.+-+.++-+....   ...+...+.+.++|+|.++.+
T Consensus       263 ~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~  316 (354)
T 3tma_A          263 ARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALL  316 (354)
T ss_dssp             GGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEE
T ss_pred             hhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            766432  2356666665555443211100   023455677788999998887

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.78  E-value=1.3e-08  Score=100.80  Aligned_cols=91  Identities=14%  Similarity=0.264  Sum_probs=74.4

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      +.++.+|||||||+|.++..+++.+ |..+++++|+ +.+++.+++           .++++++.+|+.+.. +  .||+
T Consensus       191 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~~-~--~~D~  254 (358)
T 1zg3_A          191 FEGLESLVDVGGGTGGVTKLIHEIF-PHLKCTVFDQ-PQVVGNLTG-----------NENLNFVGGDMFKSI-P--SADA  254 (358)
T ss_dssp             HHTCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEEC-HHHHSSCCC-----------CSSEEEEECCTTTCC-C--CCSE
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEecc-HHHHhhccc-----------CCCcEEEeCccCCCC-C--CceE
Confidence            3467899999999999999999997 7789999999 788765542           236999999998732 2  4999


Q ss_pred             EEecCCCCch--------HHHHHhhccc---CcEEEEE
Q psy7829         211 IYYGGCVSEV--------PSRVLNQLKK---GGRILAP  237 (511)
Q Consensus       211 I~~~~~~~~~--------~~~~~~~Lkp---gG~l~~~  237 (511)
                      |++...++++        ++++.+.|||   ||++++.
T Consensus       255 v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~  292 (358)
T 1zg3_A          255 VLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIII  292 (358)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEE
T ss_pred             EEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence            9999888643        4788999999   9999884

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=98.77  E-value=7.2e-09  Score=95.93  Aligned_cols=111  Identities=21%  Similarity=0.387  Sum_probs=77.7

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c-ccccccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T-NHIDLIANETI  431 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~-~~v~~i~~d~~  431 (511)
                      .+.....+...  +...++.+|||+|||+|+.+..+++.. |.++|+++|+++++++.+++++.   . ++++++.+|..
T Consensus        39 ~~~~~~~l~~~--~~~~~~~~vLdiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  115 (233)
T 2gpy_A           39 DLLGMESLLHL--LKMAAPARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDAL  115 (233)
T ss_dssp             CHHHHHHHHHH--HHHHCCSEEEEECCTTSHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGG
T ss_pred             CHHHHHHHHHH--HhccCCCEEEEecCCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHH
Confidence            44545444444  455688999999999999999999987 56899999999999888877764   3 35888888766


Q ss_pred             cccc-----ccchhhhhcccCCcEEEEEcCC-ccHHHHHHHHHhCCCcEEEEh
Q psy7829         432 EIIP-----HILDLCYLNLHRGAKVLEIGSG-SGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       432 ~~l~-----~~~d~i~~~l~~~~~vLD~~~g-~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +.++     ..+|.++         ++.++. ...+...+.+.|+|+|.++..
T Consensus       116 ~~~~~~~~~~~fD~I~---------~~~~~~~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          116 QLGEKLELYPLFDVLF---------IDAAKGQYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             GSHHHHTTSCCEEEEE---------EEGGGSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             HHHHhcccCCCccEEE---------ECCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            5432     2344333         233321 234456677888999988764

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.77  E-value=1.9e-08  Score=92.86  Aligned_cols=108  Identities=25%  Similarity=0.234  Sum_probs=79.7

Q ss_pred             CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc-cccccccccccc
Q psy7829         355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN-HIDLIANETIEI  433 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~-~v~~i~~d~~~~  433 (511)
                      ..+..+..++..  +.+.++.+|||+|||+|.++..+++..   .+|+++|+++++++.++++.... +++++.+|..+.
T Consensus        54 ~~~~~~~~~~~~--~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~  128 (231)
T 1vbf_A           54 TALNLGIFMLDE--LDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLG  128 (231)
T ss_dssp             CCHHHHHHHHHH--TTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGC
T ss_pred             CCHHHHHHHHHh--cCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccc
Confidence            356777788877  678899999999999999999999875   79999999999999988877643 688887776552


Q ss_pred             cc--ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         434 IP--HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       434 l~--~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .+  ..+|.++...           ....+...+.+.++|+|.++..
T Consensus       129 ~~~~~~fD~v~~~~-----------~~~~~~~~~~~~L~pgG~l~~~  164 (231)
T 1vbf_A          129 YEEEKPYDRVVVWA-----------TAPTLLCKPYEQLKEGGIMILP  164 (231)
T ss_dssp             CGGGCCEEEEEESS-----------BBSSCCHHHHHTEEEEEEEEEE
T ss_pred             cccCCCccEEEECC-----------cHHHHHHHHHHHcCCCcEEEEE
Confidence            22  2344333221           1122335677888999988766

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.77  E-value=9e-09  Score=96.00  Aligned_cols=93  Identities=13%  Similarity=0.044  Sum_probs=71.7

Q ss_pred             cchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEE
Q psy7829         114 MNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI  193 (511)
Q Consensus       114 ~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~  193 (511)
                      +..|.+...+++.+.  +.++.+|||||||+|.++. +++ . ...+|+++|+++.+++.+++++..       .+++++
T Consensus         4 L~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~-------~~~v~~   71 (252)
T 1qyr_A            4 LNDQFVIDSIVSAIN--PQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFL-------GPKLTI   71 (252)
T ss_dssp             ECCHHHHHHHHHHHC--CCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTT-------GGGEEE
T ss_pred             cCCHHHHHHHHHhcC--CCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhcc-------CCceEE
Confidence            346778888888886  7788999999999999999 653 3 434499999999999999987654       247999


Q ss_pred             EEccCCCCCCCC-----CCccEEEecCCCC
Q psy7829         194 VEADAREGYLPE-----APYDVIYYGGCVS  218 (511)
Q Consensus       194 ~~~d~~~~~~~~-----~~fD~I~~~~~~~  218 (511)
                      +++|+.....+.     +..|.|+++.++.
T Consensus        72 i~~D~~~~~~~~~~~~~~~~~~vvsNlPY~  101 (252)
T 1qyr_A           72 YQQDAMTFNFGELAEKMGQPLRVFGNLPYN  101 (252)
T ss_dssp             ECSCGGGCCHHHHHHHHTSCEEEEEECCTT
T ss_pred             EECchhhCCHHHhhcccCCceEEEECCCCC
Confidence            999997632211     2347888888874

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.75  E-value=1e-08  Score=103.43  Aligned_cols=100  Identities=17%  Similarity=0.203  Sum_probs=75.3

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhh---ccccccccccccccccc---cccchhhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIAN---ISTNHIDLIANETIEII---PHILDLCY  442 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~---~~~~~v~~i~~d~~~~l---~~~~d~i~  442 (511)
                      +.+.+|.+|||+|||+|..|+.+|..+++.++|+++|+++++++.+.+|   .+..|+.++++|.....   +..||   
T Consensus       101 L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD---  177 (456)
T 3m4x_A          101 AAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFD---  177 (456)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEE---
T ss_pred             cCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCC---
Confidence            5678999999999999999999999886668999999998777766555   45677888888765432   22333   


Q ss_pred             hcccCCcEEEEEcC-CccH-------------------------HHHHHHHHhCCCcEEEE
Q psy7829         443 LNLHRGAKVLEIGS-GSGY-------------------------LATLMAHLVGPTGHVTG  477 (511)
Q Consensus       443 ~~l~~~~~vLD~~~-g~g~-------------------------~~~~l~~~l~~~g~v~~  477 (511)
                            ..++|..| |+|.                         +...+++.|+|||.++-
T Consensus       178 ------~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvY  232 (456)
T 3m4x_A          178 ------RIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIY  232 (456)
T ss_dssp             ------EEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             ------EEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence                  34667776 6773                         34556677899999863

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.75  E-value=1.2e-08  Score=89.38  Aligned_cols=123  Identities=12%  Similarity=0.104  Sum_probs=79.1

Q ss_pred             HHHHHHHHhhcCC--CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccccccccc-
Q psy7829         359 SIAHILDLCYLNL--HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIP-  435 (511)
Q Consensus       359 ~~~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l~-  435 (511)
                      ++..++..  +..  .++.+|||+|||+|.++..+++..    +|+|+|+++.+++.      .++++++++|..+..+ 
T Consensus         9 ~~~~l~~~--l~~~~~~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~------~~~~~~~~~d~~~~~~~   76 (170)
T 3q87_B            9 DTYTLMDA--LEREGLEMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES------HRGGNLVRADLLCSINQ   76 (170)
T ss_dssp             HHHHHHHH--HHHHTCCSCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT------CSSSCEEECSTTTTBCG
T ss_pred             cHHHHHHH--HHhhcCCCCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc------ccCCeEEECChhhhccc
Confidence            34444444  333  567899999999999999998643    99999999999887      5568888888665443 


Q ss_pred             ccchhhhhcccCCcEE----EEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCC
Q psy7829         436 HILDLCYLNLHRGAKV----LEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIST  494 (511)
Q Consensus       436 ~~~d~i~~~l~~~~~v----LD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~  494 (511)
                      ..+|.++.+..-...-    +.-+...-.+...+.+.+ |+|.++.+   ..-.+..++.+++.|+
T Consensus        77 ~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf  141 (170)
T 3q87_B           77 ESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGY  141 (170)
T ss_dssp             GGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTC
T ss_pred             CCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCC
Confidence            5677766653321100    001111223445666777 99998876   2334445555666666

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.75  E-value=8.7e-08  Score=90.25  Aligned_cols=107  Identities=20%  Similarity=0.170  Sum_probs=85.0

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCccE
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYDV  210 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~  210 (511)
                      +...+||-||.|.|..+..+++.. +..+|+.+|+++.+++.|++.+.....+.+..++++++.+|+..... ..++||+
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv  160 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV  160 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence            457899999999999999999874 56789999999999999999875422111346799999999986443 3478999


Q ss_pred             EEecCCC----------CchHHHHHhhcccCcEEEEEEc
Q psy7829         211 IYYGGCV----------SEVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       211 I~~~~~~----------~~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      |+++..-          ..+.+.+++.|+|||.++.-.+
T Consensus       161 Ii~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~  199 (294)
T 3o4f_A          161 IISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG  199 (294)
T ss_dssp             EEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecC
Confidence            9987543          2345899999999999998544

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=98.75  E-value=1.7e-08  Score=92.68  Aligned_cols=67  Identities=24%  Similarity=0.372  Sum_probs=54.5

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c-ccccccccccccccc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T-NHIDLIANETIEIIP  435 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~-~~v~~i~~d~~~~l~  435 (511)
                      +...++.+|||||||+|+.++.+|+.++++++|+++|+++++++.+++++.   . ++++++.+|..+.++
T Consensus        54 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~  124 (221)
T 3u81_A           54 IREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIP  124 (221)
T ss_dssp             HHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGG
T ss_pred             HHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHH
Confidence            344578999999999999999999877557899999999999888877654   3 358888888755443

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.75  E-value=1.3e-09  Score=101.12  Aligned_cols=105  Identities=13%  Similarity=0.050  Sum_probs=68.9

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc--ccccccccccccccc----ccchhhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST--NHIDLIANETIEIIP----HILDLCY  442 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~--~~v~~i~~d~~~~l~----~~~d~i~  442 (511)
                      ....+|.+|||||||+|+.+..+++.. + .+|++||+++++++.++++...  .++.++.+++.....    ..||.++
T Consensus        56 ~~~~~G~rVLdiG~G~G~~~~~~~~~~-~-~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~  133 (236)
T 3orh_A           56 AASSKGGRVLEVGFGMAIAASKVQEAP-I-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGIL  133 (236)
T ss_dssp             HHTTTCEEEEEECCTTSHHHHHHTTSC-E-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred             hhccCCCeEEEECCCccHHHHHHHHhC-C-cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEE
Confidence            344689999999999999999998765 3 6899999999999999887663  346667776544332    2344332


Q ss_pred             hcccCCcEEEEEcCC---ccHHHHHHHHHhCCCcEEEEh
Q psy7829         443 LNLHRGAKVLEIGSG---SGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       443 ~~l~~~~~vLD~~~g---~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .+.-....   .-+.   ...+...+++.|+|||.++-.
T Consensus       134 ~D~~~~~~---~~~~~~~~~~~~~e~~rvLkPGG~l~f~  169 (236)
T 3orh_A          134 YDTYPLSE---ETWHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             ECCCCCBG---GGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             Eeeeeccc---chhhhcchhhhhhhhhheeCCCCEEEEE
Confidence            21110000   0111   122345678899999988754

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.74  E-value=5.5e-09  Score=95.04  Aligned_cols=99  Identities=11%  Similarity=0.170  Sum_probs=70.5

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c-ccccccccccccccccc--chhhhhc
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T-NHIDLIANETIEIIPHI--LDLCYLN  444 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~-~~v~~i~~d~~~~l~~~--~d~i~~~  444 (511)
                      ..++.+|||||||+|+.++.+++.++++++|+++|+++++++.+++++.   . ++++++.+|..+.++..  +|.++.+
T Consensus        54 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  133 (210)
T 3c3p_A           54 IKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMD  133 (210)
T ss_dssp             HHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEE
T ss_pred             hhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEc
Confidence            3567899999999999999999887446899999999999888877654   2 35788888865543211  5554433


Q ss_pred             ccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829         445 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       445 l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~  477 (511)
                      ...        ...-.+...+.+.|+|+|.++.
T Consensus       134 ~~~--------~~~~~~l~~~~~~LkpgG~lv~  158 (210)
T 3c3p_A          134 CDV--------FNGADVLERMNRCLAKNALLIA  158 (210)
T ss_dssp             TTT--------SCHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCh--------hhhHHHHHHHHHhcCCCeEEEE
Confidence            110        1223445666788899998876

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.74  E-value=1.1e-08  Score=104.48  Aligned_cols=103  Identities=17%  Similarity=0.162  Sum_probs=74.9

Q ss_pred             cCCC--CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---cccccccccccccccccccchhhhh
Q psy7829         369 LNLH--RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETIEIIPHILDLCYL  443 (511)
Q Consensus       369 ~~~~--~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~~~l~~~~d~i~~  443 (511)
                      +.+.  ++.+|||+|||+|..|+.+|+.+++.++|+++|+++++++.+++|+   +..|+.++++|....... .     
T Consensus       111 L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~-~-----  184 (479)
T 2frx_A          111 LFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAA-V-----  184 (479)
T ss_dssp             HTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHH-S-----
T ss_pred             hCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhh-c-----
Confidence            4555  8999999999999999999999866689999999988888776665   466788888886543210 0     


Q ss_pred             cccCCcEEEEEcC-CccHH-------------------------HHHHHHHhCCCcEEEE
Q psy7829         444 NLHRGAKVLEIGS-GSGYL-------------------------ATLMAHLVGPTGHVTG  477 (511)
Q Consensus       444 ~l~~~~~vLD~~~-g~g~~-------------------------~~~l~~~l~~~g~v~~  477 (511)
                      .-..+..++|..| |.|.+                         ...+++.|+|||.++-
T Consensus       185 ~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~Lvy  244 (479)
T 2frx_A          185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY  244 (479)
T ss_dssp             TTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence            0112345667777 55542                         3445678899999875

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.74  E-value=4.1e-08  Score=91.42  Aligned_cols=102  Identities=18%  Similarity=0.185  Sum_probs=77.1

Q ss_pred             cchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEE
Q psy7829         114 MNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI  193 (511)
Q Consensus       114 ~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~  193 (511)
                      +..+.+...+++.+.  ..++.+|||+|||+|.++..+++..  ..+|+++|+++.+++.++++  .       ..++++
T Consensus        14 l~d~~i~~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~--~~~v~avEid~~~~~~~~~~--~-------~~~v~~   80 (249)
T 3ftd_A           14 LVSEGVLKKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQHP--LKKLYVIELDREMVENLKSI--G-------DERLEV   80 (249)
T ss_dssp             EECHHHHHHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTSC--CSEEEEECCCHHHHHHHTTS--C-------CTTEEE
T ss_pred             cCCHHHHHHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHcC--CCeEEEEECCHHHHHHHHhc--c-------CCCeEE
Confidence            445678888888876  6788999999999999999999862  46899999999999999877  2       237999


Q ss_pred             EEccCCCCCCCC--CCccEEEecCCCCchHHHHHhhcc
Q psy7829         194 VEADAREGYLPE--APYDVIYYGGCVSEVPSRVLNQLK  229 (511)
Q Consensus       194 ~~~d~~~~~~~~--~~fD~I~~~~~~~~~~~~~~~~Lk  229 (511)
                      +++|+.....+.  +.| .|+++.++.-...-+.++|.
T Consensus        81 i~~D~~~~~~~~~~~~~-~vv~NlPy~i~~~il~~ll~  117 (249)
T 3ftd_A           81 INEDASKFPFCSLGKEL-KVVGNLPYNVASLIIENTVY  117 (249)
T ss_dssp             ECSCTTTCCGGGSCSSE-EEEEECCTTTHHHHHHHHHH
T ss_pred             EEcchhhCChhHccCCc-EEEEECchhccHHHHHHHHh
Confidence            999998643321  233 78888877644444445443

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.74  E-value=1.1e-08  Score=94.30  Aligned_cols=105  Identities=19%  Similarity=0.197  Sum_probs=76.6

Q ss_pred             CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccc
Q psy7829         355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEII  434 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l  434 (511)
                      .+...+..++..   .+.++.+|||+|||+|.++..+++..   .+|+++|+++.+++.++++  .++++++.+|..+.+
T Consensus        33 ~~~~l~~~~~~~---~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~--~~~~~~~~~d~~~~~  104 (226)
T 3m33_A           33 DPELTFDLWLSR---LLTPQTRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPELLKLARAN--APHADVYEWNGKGEL  104 (226)
T ss_dssp             CTTHHHHHHHHH---HCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHH--CTTSEEEECCSCSSC
T ss_pred             CHHHHHHHHHHh---cCCCCCeEEEeCCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHh--CCCceEEEcchhhcc
Confidence            344555555443   24688999999999999999998773   7999999999999998888  557888888764433


Q ss_pred             c----ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         435 P----HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       435 ~----~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +    ..+|.++..           .....+...+.+.|+|+|.++..
T Consensus       105 ~~~~~~~fD~v~~~-----------~~~~~~l~~~~~~LkpgG~l~~~  141 (226)
T 3m33_A          105 PAGLGAPFGLIVSR-----------RGPTSVILRLPELAAPDAHFLYV  141 (226)
T ss_dssp             CTTCCCCEEEEEEE-----------SCCSGGGGGHHHHEEEEEEEEEE
T ss_pred             CCcCCCCEEEEEeC-----------CCHHHHHHHHHHHcCCCcEEEEe
Confidence            2    345555443           23444556788889999998733

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.73  E-value=1.9e-08  Score=96.89  Aligned_cols=102  Identities=9%  Similarity=0.042  Sum_probs=73.4

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-----ccccccccccccccc--c------c
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-----TNHIDLIANETIEII--P------H  436 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-----~~~v~~i~~d~~~~l--~------~  436 (511)
                      ...++.+|||||||+|..+..+++.+.+..+|+++|+++.+++.++++..     ..+++++.+|..+..  .      .
T Consensus        33 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  112 (299)
T 3g5t_A           33 HDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQ  112 (299)
T ss_dssp             CCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSS
T ss_pred             hcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCC
Confidence            44689999999999999999999876456899999999999998887753     457888888754421  1      2


Q ss_pred             cchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829         437 ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       437 ~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~  477 (511)
                      .+|.++....-...      ....+...+.+.|+|||.++.
T Consensus       113 ~fD~V~~~~~l~~~------~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          113 KIDMITAVECAHWF------DFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             CEEEEEEESCGGGS------CHHHHHHHHHHHEEEEEEEEE
T ss_pred             CeeEEeHhhHHHHh------CHHHHHHHHHHhcCCCcEEEE
Confidence            34444432211110      334567788889999999876

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.73  E-value=1.9e-08  Score=95.68  Aligned_cols=73  Identities=22%  Similarity=0.277  Sum_probs=62.6

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-cccccccccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNHIDLIANETIEI  433 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~~  433 (511)
                      .+..+.+++..  +.+.++++|||||||+|++|..+++..   .+|+++|++++++..+++++. .++++++++|..+.
T Consensus        35 d~~i~~~Iv~~--l~~~~~~~VLEIG~G~G~lT~~La~~~---~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~  108 (295)
T 3gru_A           35 DKNFVNKAVES--ANLTKDDVVLEIGLGKGILTEELAKNA---KKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKV  108 (295)
T ss_dssp             CHHHHHHHHHH--TTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTS
T ss_pred             CHHHHHHHHHh--cCCCCcCEEEEECCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhC
Confidence            45778888887  788899999999999999999999874   899999999999998887764 56899999987653

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.73  E-value=1e-08  Score=94.64  Aligned_cols=101  Identities=19%  Similarity=0.211  Sum_probs=71.8

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c-ccccccccccccccc--------c
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T-NHIDLIANETIEIIP--------H  436 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~-~~v~~i~~d~~~~l~--------~  436 (511)
                      ....++.+|||+|||+|+.++.+++.+++.++|+++|+++++++.+++++.   . .+++++.+|..+.++        .
T Consensus        65 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~  144 (229)
T 2avd_A           65 ARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAG  144 (229)
T ss_dssp             HHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTT
T ss_pred             HHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCC
Confidence            345678999999999999999999887446899999999988888877764   2 468888887655433        2


Q ss_pred             cchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829         437 ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       437 ~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~  477 (511)
                      .+|.++.+..        ......+...+.+.++|+|.++.
T Consensus       145 ~~D~v~~d~~--------~~~~~~~l~~~~~~L~pgG~lv~  177 (229)
T 2avd_A          145 TFDVAVVDAD--------KENCSAYYERCLQLLRPGGILAV  177 (229)
T ss_dssp             CEEEEEECSC--------STTHHHHHHHHHHHEEEEEEEEE
T ss_pred             CccEEEECCC--------HHHHHHHHHHHHHHcCCCeEEEE
Confidence            2343333211        01122345667788999999887

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.73  E-value=1.6e-08  Score=92.57  Aligned_cols=111  Identities=15%  Similarity=0.332  Sum_probs=78.8

Q ss_pred             HHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccccccc--cc
Q psy7829         361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEI--IP  435 (511)
Q Consensus       361 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~--l~  435 (511)
                      ..++..  +.+.++.+|||+|||+|.++..+++..+|..+|+++|+++++++.+++++.   ..+++++.+|....  .+
T Consensus        27 ~~~~~~--~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~  104 (219)
T 3dh0_A           27 EKVLKE--FGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD  104 (219)
T ss_dssp             HHHHHH--HTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred             HHHHHH--hCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence            455555  677889999999999999999999998777899999999998888777653   45688887775442  12


Q ss_pred             ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         436 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       436 ~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..+|.++....-.     .-.....+...+.+.|+|+|.++..
T Consensus       105 ~~fD~v~~~~~l~-----~~~~~~~~l~~~~~~LkpgG~l~i~  142 (219)
T 3dh0_A          105 NTVDFIFMAFTFH-----ELSEPLKFLEELKRVAKPFAYLAII  142 (219)
T ss_dssp             SCEEEEEEESCGG-----GCSSHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCeeEEEeehhhh-----hcCCHHHHHHHHHHHhCCCeEEEEE
Confidence            3344443321100     0012345667888899999998875

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.72  E-value=2.7e-08  Score=92.13  Aligned_cols=109  Identities=21%  Similarity=0.363  Sum_probs=78.5

Q ss_pred             CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccccc
Q psy7829         355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETI  431 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~  431 (511)
                      ..+..+..++..  +.+.++.+|||+|||+|+++..+++..+  .+|+++|+++++++.+++++.   ..+++++.+|..
T Consensus        75 ~~~~~~~~~~~~--l~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~  150 (235)
T 1jg1_A           75 SAPHMVAIMLEI--ANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS  150 (235)
T ss_dssp             CCHHHHHHHHHH--HTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG
T ss_pred             ccHHHHHHHHHh--cCCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcc
Confidence            466778888887  6788999999999999999999999884  899999999988888777654   456777777752


Q ss_pred             ccccc--cchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         432 EIIPH--ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       432 ~~l~~--~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..++.  .+|.++.           .+....+...+.+.|+|+|.++..
T Consensus       151 ~~~~~~~~fD~Ii~-----------~~~~~~~~~~~~~~L~pgG~lvi~  188 (235)
T 1jg1_A          151 KGFPPKAPYDVIIV-----------TAGAPKIPEPLIEQLKIGGKLIIP  188 (235)
T ss_dssp             GCCGGGCCEEEEEE-----------CSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             cCCCCCCCccEEEE-----------CCcHHHHHHHHHHhcCCCcEEEEE
Confidence            22221  1333322           122223335677888999988765

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.72  E-value=7.8e-09  Score=95.63  Aligned_cols=100  Identities=19%  Similarity=0.239  Sum_probs=70.1

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c-ccccccccccccccc--------cc
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T-NHIDLIANETIEIIP--------HI  437 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~-~~v~~i~~d~~~~l~--------~~  437 (511)
                      ...++.+|||||||+|+.++.+++.++++++|+++|+++++++.+++++.   . ++++++.++..+.++        ..
T Consensus        69 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~  148 (232)
T 3cbg_A           69 SLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPE  148 (232)
T ss_dssp             HHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCC
T ss_pred             HhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCC
Confidence            44578899999999999999999887546899999999999888877653   3 358888887655433        22


Q ss_pred             chhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829         438 LDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       438 ~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~  477 (511)
                      +|.++.+...        ...-.+...+.+.|+|+|.++.
T Consensus       149 fD~V~~d~~~--------~~~~~~l~~~~~~LkpgG~lv~  180 (232)
T 3cbg_A          149 FDLIFIDADK--------RNYPRYYEIGLNLLRRGGLMVI  180 (232)
T ss_dssp             EEEEEECSCG--------GGHHHHHHHHHHTEEEEEEEEE
T ss_pred             cCEEEECCCH--------HHHHHHHHHHHHHcCCCeEEEE
Confidence            3433322110        0112334566788899999886

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.72  E-value=9.8e-09  Score=96.88  Aligned_cols=116  Identities=24%  Similarity=0.266  Sum_probs=80.1

Q ss_pred             CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc-ccccccccccccc
Q psy7829         355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST-NHIDLIANETIEI  433 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~-~~v~~i~~d~~~~  433 (511)
                      .....+..++..  +.+.++.+|||+|||+|..+..+++..+  .+|+++|+++++++.++++... .+++++.+|..+.
T Consensus        39 ~~~~~~~~~~~~--~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~  114 (266)
T 3ujc_A           39 GGLEATKKILSD--IELNENSKVLDIGSGLGGGCMYINEKYG--AHTHGIDICSNIVNMANERVSGNNKIIFEANDILTK  114 (266)
T ss_dssp             THHHHHHHHTTT--CCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTC
T ss_pred             chHHHHHHHHHh--cCCCCCCEEEEECCCCCHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccC
Confidence            345566666665  6788999999999999999999999864  7999999999999999888765 6788887775442


Q ss_pred             --ccccchhhhhcccCCcEEEEEc-CCccHHHHHHHHHhCCCcEEEEh
Q psy7829         434 --IPHILDLCYLNLHRGAKVLEIG-SGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       434 --l~~~~d~i~~~l~~~~~vLD~~-~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                        .+..+|.++....-..    ++ .....+...+.+.|+|+|.++..
T Consensus       115 ~~~~~~fD~v~~~~~l~~----~~~~~~~~~l~~~~~~L~pgG~l~~~  158 (266)
T 3ujc_A          115 EFPENNFDLIYSRDAILA----LSLENKNKLFQKCYKWLKPTGTLLIT  158 (266)
T ss_dssp             CCCTTCEEEEEEESCGGG----SCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCCcEEEEeHHHHHHh----cChHHHHHHHHHHHHHcCCCCEEEEE
Confidence              1233444332210000    00 11223356677888999988765

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=98.71  E-value=2e-08  Score=95.59  Aligned_cols=113  Identities=10%  Similarity=0.001  Sum_probs=81.9

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc---c-cccccccccccccc-ccchhhhhcc
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST---N-HIDLIANETIEIIP-HILDLCYLNL  445 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~---~-~v~~i~~d~~~~l~-~~~d~i~~~l  445 (511)
                      ++++.+|||+|||+|.+++.+|+.. + .+|+|+|+++++++.+++|...   . +++++++|..+... ..+|.++.  
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~~-~-~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~--  198 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVYG-K-AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILM--  198 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHT-C-CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEE--
T ss_pred             CCCCCEEEEecccCCHHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEE--
Confidence            4679999999999999999999886 3 3899999999998888877653   3 37788888766543 34554443  


Q ss_pred             cCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh---------HHHHHHHHHHHHhcCC
Q psy7829         446 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---------EHMMDIAIESIANIST  494 (511)
Q Consensus       446 ~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---------~~ml~~a~~~~~~~~~  494 (511)
                             |...+.-.+...+.+.|+|+|.++..         ...++..++.+.+.|.
T Consensus       199 -------~~p~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~  249 (278)
T 2frn_A          199 -------GYVVRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGY  249 (278)
T ss_dssp             -------CCCSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTC
T ss_pred             -------CCchhHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCC
Confidence                   33344445667788899999988764         2344555666777665

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.70  E-value=3.4e-08  Score=102.29  Aligned_cols=122  Identities=16%  Similarity=0.090  Sum_probs=89.2

Q ss_pred             CcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCC--------------CceEEEEeCCHHHHHHHHH
Q psy7829         111 AGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGP--------------TGKVIGVEHIPELIEASLR  176 (511)
Q Consensus       111 ~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~--------------~~~v~~iD~~~~~~~~a~~  176 (511)
                      |...+-+.+...|++.+.  ..++ +|||.+||||.+...+++.+..              ...++|+|+++.++..|+.
T Consensus       225 G~fyTP~~Vv~lmv~ll~--p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~  301 (544)
T 3khk_A          225 GQYYTPKSIVTLIVEMLE--PYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAM  301 (544)
T ss_dssp             TTTCCCHHHHHHHHHHHC--CCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHH
T ss_pred             CeEeCCHHHHHHHHHHHh--cCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHH
Confidence            444455557777777775  4444 9999999999998887654310              3579999999999999999


Q ss_pred             HHhccCCCcCCCCCeEEEEccCCCCC-CCCCCccEEEecCCCCc-----------------------------------h
Q psy7829         177 NISKGNKDLLDSGRVRIVEADAREGY-LPEAPYDVIYYGGCVSE-----------------------------------V  220 (511)
Q Consensus       177 ~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~I~~~~~~~~-----------------------------------~  220 (511)
                      |+...|.    ..++.+.++|..... .....||+|++|+|+..                                   +
T Consensus       302 Nl~l~gi----~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~F  377 (544)
T 3khk_A          302 NMVIRGI----DFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAW  377 (544)
T ss_dssp             HHHHTTC----CCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHH
T ss_pred             HHHHhCC----CcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHH
Confidence            9887652    234555788866432 23478999999988742                                   2


Q ss_pred             HHHHHhhcccCcEEEEEEc
Q psy7829         221 PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       221 ~~~~~~~LkpgG~l~~~~~  239 (511)
                      ...+.+.|||||++.+.+.
T Consensus       378 l~~~l~~Lk~gGr~aiVlP  396 (544)
T 3khk_A          378 MLHMLYHLAPTGSMALLLA  396 (544)
T ss_dssp             HHHHHHTEEEEEEEEEEEE
T ss_pred             HHHHHHHhccCceEEEEec
Confidence            3667899999999887654

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.70  E-value=3.3e-09  Score=97.56  Aligned_cols=107  Identities=10%  Similarity=0.059  Sum_probs=65.3

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCC-HHHHHHH---Hhhc---cccccccccccccccccccchh--
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHM-MDIAIES---IANI---STNHIDLIANETIEIIPHILDL--  440 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~-~~~~~~~---~~~~---~~~~v~~i~~d~~~~l~~~~d~--  440 (511)
                      ...++.+|||||||+|.++..+|+.. ++.+|+|+|++ +.+++.+   +++.   +..|+.++++|........++.  
T Consensus        21 ~~~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~   99 (225)
T 3p2e_A           21 IGQFDRVHIDLGTGDGRNIYKLAIND-QNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIAD   99 (225)
T ss_dssp             HTTCSEEEEEETCTTSHHHHHHHHTC-TTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEE
T ss_pred             hCCCCCEEEEEeccCcHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEE
Confidence            34688999999999999999998765 66899999999 6665544   5543   3567888888765542111111  


Q ss_pred             -hhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829         441 -CYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       441 -i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~  477 (511)
                       +..+..-.............+...+++.|+|||.++.
T Consensus       100 ~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A          100 SISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             EEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             EEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence             1111100000000000112345667788899998876

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.70  E-value=2e-08  Score=95.22  Aligned_cols=99  Identities=13%  Similarity=0.105  Sum_probs=75.4

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccccccccc--cchhhhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEIIPH--ILDLCYL  443 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~l~~--~~d~i~~  443 (511)
                      ..+.++++|||+|||+|.+++.+|+.. +.++|+++|+++++++.+++|+.   ..++.++++|..+. +.  .+|.++.
T Consensus       115 ~~~~~~~~VLDlgcG~G~~s~~la~~~-~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~~~~~D~Vi~  192 (272)
T 3a27_A          115 FISNENEVVVDMFAGIGYFTIPLAKYS-KPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-ELKDVADRVIM  192 (272)
T ss_dssp             TSCCTTCEEEETTCTTTTTHHHHHHHT-CCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CCTTCEEEEEE
T ss_pred             HhcCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-CccCCceEEEE
Confidence            456789999999999999999999987 34799999999988888777765   45678888887665 32  3444443


Q ss_pred             cccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       444 ~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                               |...+...+...+.+.++|+|.++..
T Consensus       193 ---------d~p~~~~~~l~~~~~~LkpgG~l~~s  218 (272)
T 3a27_A          193 ---------GYVHKTHKFLDKTFEFLKDRGVIHYH  218 (272)
T ss_dssp             ---------CCCSSGGGGHHHHHHHEEEEEEEEEE
T ss_pred             ---------CCcccHHHHHHHHHHHcCCCCEEEEE
Confidence                     33335566677778889999988755

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.70  E-value=3.4e-08  Score=97.81  Aligned_cols=102  Identities=25%  Similarity=0.226  Sum_probs=76.5

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhcc--CCCcCCCCCeEEEEccCCCCCCC--CC
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKG--NKDLLDSGRVRIVEADAREGYLP--EA  206 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~~~~~~~~v~~~~~d~~~~~~~--~~  206 (511)
                      +.+|.+|||+|||+|..+..+++..   .+|+++|+|+.+++.|++|++.+  |     .++++++++|+.+....  .+
T Consensus        91 l~~g~~VLDLgcG~G~~al~LA~~g---~~V~~VD~s~~~l~~Ar~N~~~~~~g-----l~~i~~i~~Da~~~L~~~~~~  162 (410)
T 3ll7_A           91 IREGTKVVDLTGGLGIDFIALMSKA---SQGIYIERNDETAVAARHNIPLLLNE-----GKDVNILTGDFKEYLPLIKTF  162 (410)
T ss_dssp             SCTTCEEEESSCSSSHHHHHHHTTC---SEEEEEESCHHHHHHHHHHHHHHSCT-----TCEEEEEESCGGGSHHHHHHH
T ss_pred             cCCCCEEEEeCCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHhHHHhccC-----CCcEEEEECcHHHhhhhccCC
Confidence            4468999999999999999998863   47999999999999999999875  4     36899999999764221  25


Q ss_pred             CccEEEecCCCCch--------------HHHHHhhc-ccCcEEEEEEcc
Q psy7829         207 PYDVIYYGGCVSEV--------------PSRVLNQL-KKGGRILAPIGP  240 (511)
Q Consensus       207 ~fD~I~~~~~~~~~--------------~~~~~~~L-kpgG~l~~~~~~  240 (511)
                      +||+|+++++...-              ...+.+.| .....+++-+.+
T Consensus       163 ~fDvV~lDPPrr~~~~grv~~led~~P~l~~~~~~l~~~~~~~~vK~sP  211 (410)
T 3ll7_A          163 HPDYIYVDPARRSGADKRVYAIADCEPDLIPLATELLPFCSSILAKLSP  211 (410)
T ss_dssp             CCSEEEECCEEC-----CCCCGGGEESCHHHHHHHHGGGSSEEEEEECT
T ss_pred             CceEEEECCCCcCCCCceEEehhhcCCCHHHHHHHHHhhCCcEEEEcCC
Confidence            79999999776321              13455544 445566665544

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.69  E-value=6.3e-08  Score=88.29  Aligned_cols=113  Identities=15%  Similarity=0.161  Sum_probs=76.1

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----ccccccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETI  431 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~  431 (511)
                      .+.....++..  +..+++ +|||+|||+|.++..+++.  ++.+|+++|+++++++.+++++..    ++++++.+|..
T Consensus        29 ~~~~~~~~~~~--~~~~~~-~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~  103 (219)
T 3dlc_A           29 YPIIAENIINR--FGITAG-TCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVH  103 (219)
T ss_dssp             HHHHHHHHHHH--HCCCEE-EEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTT
T ss_pred             cHHHHHHHHHh--cCCCCC-EEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHH
Confidence            34555566665  566666 9999999999999999987  347999999999998888777542    36778877754


Q ss_pred             cc--ccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         432 EI--IPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       432 ~~--l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +.  .+..+|.++....-..     -.....+...+.+.|+|+|.++..
T Consensus       104 ~~~~~~~~~D~v~~~~~l~~-----~~~~~~~l~~~~~~L~pgG~l~~~  147 (219)
T 3dlc_A          104 NIPIEDNYADLIVSRGSVFF-----WEDVATAFREIYRILKSGGKTYIG  147 (219)
T ss_dssp             BCSSCTTCEEEEEEESCGGG-----CSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HCCCCcccccEEEECchHhh-----ccCHHHHHHHHHHhCCCCCEEEEE
Confidence            42  1233444433211000     012345567788889999987763

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.69  E-value=4.1e-08  Score=87.61  Aligned_cols=112  Identities=13%  Similarity=0.112  Sum_probs=76.2

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccc--cccccccccc
Q psy7829         358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNH--IDLIANETIE  432 (511)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~--v~~i~~d~~~  432 (511)
                      .....++..  +...++.+|||+|||+|.++..+++. +  .+|+++|+++++++.++++..   ..+  ++++.+|..+
T Consensus        39 ~~~~~l~~~--~~~~~~~~vLdiG~G~G~~~~~~~~~-~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~  113 (194)
T 1dus_A           39 KGTKILVEN--VVVDKDDDILDLGCGYGVIGIALADE-V--KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE  113 (194)
T ss_dssp             HHHHHHHHH--CCCCTTCEEEEETCTTSHHHHHHGGG-S--SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT
T ss_pred             hHHHHHHHH--cccCCCCeEEEeCCCCCHHHHHHHHc-C--CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc
Confidence            455666776  67778999999999999999999877 3  899999999998888777664   444  7788777654


Q ss_pred             ccc-ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         433 IIP-HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       433 ~l~-~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..+ ..+|.++.+..-...    ......+...+.+.++|+|.++..
T Consensus       114 ~~~~~~~D~v~~~~~~~~~----~~~~~~~l~~~~~~L~~gG~l~~~  156 (194)
T 1dus_A          114 NVKDRKYNKIITNPPIRAG----KEVLHRIIEEGKELLKDNGEIWVV  156 (194)
T ss_dssp             TCTTSCEEEEEECCCSTTC----HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccCCceEEEECCCcccc----hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            332 234444332211000    000123455667889999998876

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.69  E-value=1.3e-08  Score=95.87  Aligned_cols=110  Identities=14%  Similarity=0.240  Sum_probs=76.2

Q ss_pred             HHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccccccc--
Q psy7829         359 SIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEI--  433 (511)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~--  433 (511)
                      ....++..  +...++.+|||+|||+|.++..+++..   .+|+++|+++++++.++++..   .++++++.+|....  
T Consensus        25 ~~~~l~~~--l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~   99 (260)
T 1vl5_A           25 DLAKLMQI--AALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPF   99 (260)
T ss_dssp             CHHHHHHH--HTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCS
T ss_pred             HHHHHHHH--hCCCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCC
Confidence            34555665  677789999999999999999998775   599999999999988777653   45688887775442  


Q ss_pred             ccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         434 IPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       434 l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .+..+|.++....-.     .-.....+...+.+.|+|+|.++..
T Consensus       100 ~~~~fD~V~~~~~l~-----~~~d~~~~l~~~~r~LkpgG~l~~~  139 (260)
T 1vl5_A          100 TDERFHIVTCRIAAH-----HFPNPASFVSEAYRVLKKGGQLLLV  139 (260)
T ss_dssp             CTTCEEEEEEESCGG-----GCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCEEEEEEhhhhH-----hcCCHHHHHHHHHHHcCCCCEEEEE
Confidence            123455544331110     0012335567788889999988764

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.68  E-value=8.6e-09  Score=90.28  Aligned_cols=99  Identities=9%  Similarity=0.135  Sum_probs=73.4

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccccccchhhhhcccCC
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIPHILDLCYLNLHRG  448 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l~~~~d~i~~~l~~~  448 (511)
                      +.+.++.+|||+|||+|.++..+++..   .+|+++|+++++++.++++  .++++++.+| ....+..+|.++....-.
T Consensus        13 ~~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~--~~~v~~~~~d-~~~~~~~~D~v~~~~~l~   86 (170)
T 3i9f_A           13 IFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK--FDSVITLSDP-KEIPDNSVDFILFANSFH   86 (170)
T ss_dssp             HHSSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH--CTTSEEESSG-GGSCTTCEEEEEEESCST
T ss_pred             cCcCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh--CCCcEEEeCC-CCCCCCceEEEEEccchh
Confidence            466789999999999999999999876   5999999999999988887  5678888887 443344556554332111


Q ss_pred             cEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         449 AKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       449 ~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .     ......+...+.+.++|+|.++..
T Consensus        87 ~-----~~~~~~~l~~~~~~L~pgG~l~~~  111 (170)
T 3i9f_A           87 D-----MDDKQHVISEVKRILKDDGRVIII  111 (170)
T ss_dssp             T-----CSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             c-----ccCHHHHHHHHHHhcCCCCEEEEE
Confidence            0     013345667888899999998776

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.68  E-value=3.6e-08  Score=91.61  Aligned_cols=113  Identities=12%  Similarity=0.157  Sum_probs=78.1

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---cccccccccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETIE  432 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~~  432 (511)
                      ++.....++..  +.+.++.+|||+|||+|.++..+++..   .+|+++|+++.+++.++++.   +..+++++.+|...
T Consensus         6 ~~~~~~~~~~~--~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~   80 (239)
T 1xxl_A            6 HHHSLGLMIKT--AECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAES   80 (239)
T ss_dssp             CHHHHHHHHHH--HTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTB
T ss_pred             cCCCcchHHHH--hCcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEeccccc
Confidence            44555566666  788999999999999999999998765   69999999999888877665   34578888777543


Q ss_pred             c--ccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         433 I--IPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       433 ~--l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .  .+..+|.++....-..     -.....+...+.+.|+|+|.++..
T Consensus        81 ~~~~~~~fD~v~~~~~l~~-----~~~~~~~l~~~~~~LkpgG~l~~~  123 (239)
T 1xxl_A           81 LPFPDDSFDIITCRYAAHH-----FSDVRKAVREVARVLKQDGRFLLV  123 (239)
T ss_dssp             CCSCTTCEEEEEEESCGGG-----CSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCCCcEEEEEECCchhh-----ccCHHHHHHHHHHHcCCCcEEEEE
Confidence            2  1233454443211000     012345567778888999988764

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=98.68  E-value=9.7e-09  Score=90.60  Aligned_cols=114  Identities=20%  Similarity=0.184  Sum_probs=71.4

Q ss_pred             CCHHHHHHHHHHhhcC-CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----ccccccccc
Q psy7829         355 SSERSIAHILDLCYLN-LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANE  429 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d  429 (511)
                      .+......++..  +. ..++.+|||+|||+|.+++.+++..  ..+|+++|+++++++.+++++..    ++++++.+|
T Consensus        14 ~~~~~~~~~~~~--l~~~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d   89 (177)
T 2esr_A           14 TSDKVRGAIFNM--IGPYFNGGRVLDLFAGSGGLAIEAVSRG--MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKME   89 (177)
T ss_dssp             ----CHHHHHHH--HCSCCCSCEEEEETCTTCHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSC
T ss_pred             CHHHHHHHHHHH--HHhhcCCCeEEEeCCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECc
Confidence            344445555554  33 6688999999999999999998762  37999999999999988877653    357788887


Q ss_pred             cccccc---ccchhhhhcccCCcEEEEEcCCccHHHHHHH--HHhCCCcEEEEh
Q psy7829         430 TIEIIP---HILDLCYLNLHRGAKVLEIGSGSGYLATLMA--HLVGPTGHVTGL  478 (511)
Q Consensus       430 ~~~~l~---~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~--~~l~~~g~v~~~  478 (511)
                      ..+.++   ..+|.++.+..-..      .........+.  +.|+|+|.++..
T Consensus        90 ~~~~~~~~~~~fD~i~~~~~~~~------~~~~~~~~~l~~~~~L~~gG~l~~~  137 (177)
T 2esr_A           90 AERAIDCLTGRFDLVFLDPPYAK------ETIVATIEALAAKNLLSEQVMVVCE  137 (177)
T ss_dssp             HHHHHHHBCSCEEEEEECCSSHH------HHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             HHHhHHhhcCCCCEEEECCCCCc------chHHHHHHHHHhCCCcCCCcEEEEE
Confidence            655332   23444333211000      00011223343  567898888765

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.68  E-value=2.2e-08  Score=93.40  Aligned_cols=101  Identities=11%  Similarity=0.089  Sum_probs=71.6

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccccc-------cchhhh
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIPH-------ILDLCY  442 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l~~-------~~d~i~  442 (511)
                      .+.++.+|||+|||+|.++..+++..   .+|+++|+++.+++.++++....+++++++|..+....       .+|.++
T Consensus        53 ~~~~~~~vLD~GcG~G~~~~~la~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~  129 (245)
T 3ggd_A           53 LFNPELPLIDFACGNGTQTKFLSQFF---PRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIY  129 (245)
T ss_dssp             TSCTTSCEEEETCTTSHHHHHHHHHS---SCEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEE
T ss_pred             ccCCCCeEEEEcCCCCHHHHHHHHhC---CCEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEE
Confidence            46788999999999999999999876   48999999999999999988777889888876543211       122222


Q ss_pred             hcccCCcEEEEEcC--CccHHHHHHHHHhCCCcEEEEh
Q psy7829         443 LNLHRGAKVLEIGS--GSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       443 ~~l~~~~~vLD~~~--g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ....-..     ..  ..-.+...+.+.|+|+|.++.+
T Consensus       130 ~~~~~~~-----~~~~~~~~~l~~~~~~LkpgG~l~i~  162 (245)
T 3ggd_A          130 MRTGFHH-----IPVEKRELLGQSLRILLGKQGAMYLI  162 (245)
T ss_dssp             EESSSTT-----SCGGGHHHHHHHHHHHHTTTCEEEEE
T ss_pred             Ecchhhc-----CCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            2110000     00  1124566788889999987665

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.68  E-value=4.4e-08  Score=93.66  Aligned_cols=102  Identities=17%  Similarity=0.130  Sum_probs=72.5

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----ccccccccccccccccccchhhhhc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETIEIIPHILDLCYLN  444 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~~~l~~~~d~i~~~  444 (511)
                      +.+.++.+|||||||+|.++..+++..+  .+|+++|+++++++.+++++.    ..+++++.+|..+ ++..+|.++..
T Consensus        60 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~fD~v~~~  136 (287)
T 1kpg_A           60 LGLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDEPVDRIVSI  136 (287)
T ss_dssp             TTCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCCCCSEEEEE
T ss_pred             cCCCCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CCCCeeEEEEe
Confidence            6678899999999999999999997775  699999999999988877654    2467777777643 23445544322


Q ss_pred             ccCCcEEEE-Ec-CCccHHHHHHHHHhCCCcEEEEh
Q psy7829         445 LHRGAKVLE-IG-SGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       445 l~~~~~vLD-~~-~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .     ++. ++ .....+...+.+.|+|+|.++..
T Consensus       137 ~-----~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~  167 (287)
T 1kpg_A          137 G-----AFEHFGHERYDAFFSLAHRLLPADGVMLLH  167 (287)
T ss_dssp             S-----CGGGTCTTTHHHHHHHHHHHSCTTCEEEEE
T ss_pred             C-----chhhcChHHHHHHHHHHHHhcCCCCEEEEE
Confidence            1     000 01 12345567788899999998764

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.68  E-value=1.2e-08  Score=95.60  Aligned_cols=95  Identities=11%  Similarity=0.122  Sum_probs=68.2

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccccccc--ccccchhhhhcccCCc
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEI--IPHILDLCYLNLHRGA  449 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~--l~~~~d~i~~~l~~~~  449 (511)
                      ..+.+|||||||+|..+..++...   .+|+|+|++++|++.+++   .++++++.++..+.  -+..+|.+.....-.+
T Consensus        38 ~~~~~vLDvGcGtG~~~~~l~~~~---~~v~gvD~s~~ml~~a~~---~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~  111 (257)
T 4hg2_A           38 PARGDALDCGCGSGQASLGLAEFF---ERVHAVDPGEAQIRQALR---HPRVTYAVAPAEDTGLPPASVDVAIAAQAMHW  111 (257)
T ss_dssp             SCSSEEEEESCTTTTTHHHHHTTC---SEEEEEESCHHHHHTCCC---CTTEEEEECCTTCCCCCSSCEEEEEECSCCTT
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHhC---CEEEEEeCcHHhhhhhhh---cCCceeehhhhhhhcccCCcccEEEEeeehhH
Confidence            456799999999999999999765   799999999999987654   35788887765432  2345565544322111


Q ss_pred             EEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         450 KVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       450 ~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                        +    ....+..++.+.|+|||.+..+
T Consensus       112 --~----~~~~~~~e~~rvLkpgG~l~~~  134 (257)
T 4hg2_A          112 --F----DLDRFWAELRRVARPGAVFAAV  134 (257)
T ss_dssp             --C----CHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --h----hHHHHHHHHHHHcCCCCEEEEE
Confidence              1    2345667888999999998665

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=98.68  E-value=2.5e-08  Score=88.66  Aligned_cols=116  Identities=16%  Similarity=0.151  Sum_probs=76.5

Q ss_pred             CCCCHHHHHHHHHHhhc-CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----ccccccc
Q psy7829         353 GPSSERSIAHILDLCYL-NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIA  427 (511)
Q Consensus       353 ~~~~~~~~~~~~~~~~~-~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~  427 (511)
                      .|.+......++..  + ...++.+|||+|||+|.+++.+++..  ..+|+++|+++++++.+++++..    ++++++.
T Consensus        25 rp~~~~~~~~~~~~--l~~~~~~~~vLD~GcG~G~~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~  100 (187)
T 2fhp_A           25 RPTTDKVKESIFNM--IGPYFDGGMALDLYSGSGGLAIEAVSRG--MDKSICIEKNFAALKVIKENIAITKEPEKFEVRK  100 (187)
T ss_dssp             CCCCHHHHHHHHHH--HCSCCSSCEEEETTCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE
T ss_pred             CcCHHHHHHHHHHH--HHhhcCCCCEEEeCCccCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEE
Confidence            46677777777665  3 34678999999999999999888742  37999999999998888777652    4688888


Q ss_pred             ccccccc------cccchhhhhcccCCcEEEEEcCCccHHHHHH--HHHhCCCcEEEEh
Q psy7829         428 NETIEII------PHILDLCYLNLHRGAKVLEIGSGSGYLATLM--AHLVGPTGHVTGL  478 (511)
Q Consensus       428 ~d~~~~l------~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l--~~~l~~~g~v~~~  478 (511)
                      +|..+..      +..+|.++.+..-..      .........+  .+.|+|+|.++..
T Consensus       101 ~d~~~~~~~~~~~~~~fD~i~~~~~~~~------~~~~~~~~~l~~~~~L~~gG~l~~~  153 (187)
T 2fhp_A          101 MDANRALEQFYEEKLQFDLVLLDPPYAK------QEIVSQLEKMLERQLLTNEAVIVCE  153 (187)
T ss_dssp             SCHHHHHHHHHHTTCCEEEEEECCCGGG------CCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             CcHHHHHHHHHhcCCCCCEEEECCCCCc------hhHHHHHHHHHHhcccCCCCEEEEE
Confidence            8865543      233454443322000      0011222333  4557899988765

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.67  E-value=2.7e-08  Score=93.56  Aligned_cols=72  Identities=21%  Similarity=0.299  Sum_probs=62.4

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEI  433 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~  433 (511)
                      .+..+.+++..  +.+.++ +|||||||+|.+|..+++..   .+|+++|++++++..+++++...+++++++|..+.
T Consensus        32 d~~i~~~Iv~~--~~~~~~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~  103 (271)
T 3fut_A           32 SEAHLRRIVEA--ARPFTG-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLY  103 (271)
T ss_dssp             CHHHHHHHHHH--HCCCCS-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGS
T ss_pred             CHHHHHHHHHh--cCCCCC-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhC
Confidence            34677788887  778888 99999999999999999875   79999999999999998888777899999987664

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.67  E-value=6e-09  Score=95.38  Aligned_cols=98  Identities=17%  Similarity=0.135  Sum_probs=66.8

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHH----HHhh---ccccccccccccccccccccchhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE----SIAN---ISTNHIDLIANETIEIIPHILDLC  441 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~----~~~~---~~~~~v~~i~~d~~~~l~~~~d~i  441 (511)
                      +.+.++.+|||+|||+|.++..+++.. |..+|+++|+++++++.    ++++   .+.++++++++|... ++...   
T Consensus        23 l~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~-l~~~~---   97 (218)
T 3mq2_A           23 LRSQYDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAER-LPPLS---   97 (218)
T ss_dssp             HHTTSSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTT-CCSCC---
T ss_pred             hhccCCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhh-CCCCC---
Confidence            556789999999999999999999986 66999999999885554    3332   335578888877654 22100   


Q ss_pred             hhcccCCcEEEEEcC-----------CccHHHHHHHHHhCCCcEEEE
Q psy7829         442 YLNLHRGAKVLEIGS-----------GSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       442 ~~~l~~~~~vLD~~~-----------g~g~~~~~l~~~l~~~g~v~~  477 (511)
                          ..  ..+++..           ..-.+...+.+.|+|+|.++.
T Consensus        98 ----~~--d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  138 (218)
T 3mq2_A           98 ----GV--GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLV  138 (218)
T ss_dssp             ----CE--EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEE
T ss_pred             ----CC--CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEE
Confidence                00  1111211           113455677888999999875

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.67  E-value=2.4e-07  Score=95.79  Aligned_cols=126  Identities=13%  Similarity=-0.004  Sum_probs=93.6

Q ss_pred             CcccchhHHHHHHHHHHhhc--CCCCCEEEEEcCCccHHHHHHHHHhC--CCceEEEEeCCHHHHHHHHHHHhccCCCcC
Q psy7829         111 AGVMNAPNQIADAAENLKLH--LVDGAKVLDLGSGSGYQTCVFAHMVG--PTGKVIGVEHIPELIEASLRNISKGNKDLL  186 (511)
Q Consensus       111 ~~~~~~p~~~~~~~~~l~~~--~~~~~~vLDiG~G~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~  186 (511)
                      |...+-+.+...|++.+...  ..++.+|||.+||||.+...+++.+.  ...+++|+|+++.++..|+.|+...|.   
T Consensus       197 G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi---  273 (542)
T 3lkd_A          197 GEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGV---  273 (542)
T ss_dssp             SSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTC---
T ss_pred             CeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCC---
Confidence            33334445666777777522  23678999999999999988888752  256899999999999999999877651   


Q ss_pred             CCCCeEEEEccCCCC--C-CCCCCccEEEecCCCCc-----------------------------hHHHHHhhcc-cCcE
Q psy7829         187 DSGRVRIVEADAREG--Y-LPEAPYDVIYYGGCVSE-----------------------------VPSRVLNQLK-KGGR  233 (511)
Q Consensus       187 ~~~~v~~~~~d~~~~--~-~~~~~fD~I~~~~~~~~-----------------------------~~~~~~~~Lk-pgG~  233 (511)
                      ..+++.+.++|....  + .....||+|++|+|+..                             +...+.+.|| |||+
T Consensus       274 ~~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr  353 (542)
T 3lkd_A          274 PIENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGV  353 (542)
T ss_dssp             CGGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCE
T ss_pred             CcCccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCcee
Confidence            225789999998753  1 23478999999988610                             2366788999 9999


Q ss_pred             EEEEEc
Q psy7829         234 ILAPIG  239 (511)
Q Consensus       234 l~~~~~  239 (511)
                      +.+.+.
T Consensus       354 ~a~VlP  359 (542)
T 3lkd_A          354 MAIVLP  359 (542)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            987654

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.67  E-value=3.3e-08  Score=95.78  Aligned_cols=102  Identities=12%  Similarity=0.077  Sum_probs=73.8

Q ss_pred             cC-CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----ccccccccccccc--ccccchhh
Q psy7829         369 LN-LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETIEI--IPHILDLC  441 (511)
Q Consensus       369 ~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~~--l~~~~d~i  441 (511)
                      +. +.++.+|||+|||+|.++..+++..+  .+|+++|+++++++.++++...    .+++++.+|..+.  .+..+|.+
T Consensus       112 l~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V  189 (312)
T 3vc1_A          112 LGQAGPDDTLVDAGCGRGGSMVMAHRRFG--SRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTAS  189 (312)
T ss_dssp             SCCCCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEE
T ss_pred             hccCCCCCEEEEecCCCCHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEE
Confidence            45 77899999999999999999998864  7999999999999888776542    3688888876543  12345554


Q ss_pred             hhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         442 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       442 ~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +....     +. ..+...+...+.+.|+|+|.++.+
T Consensus       190 ~~~~~-----l~-~~~~~~~l~~~~~~LkpgG~l~~~  220 (312)
T 3vc1_A          190 WNNES-----TM-YVDLHDLFSEHSRFLKVGGRYVTI  220 (312)
T ss_dssp             EEESC-----GG-GSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EECCc-----hh-hCCHHHHHHHHHHHcCCCcEEEEE
Confidence            43211     00 012456677888899999998765

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.67  E-value=3.3e-08  Score=92.38  Aligned_cols=58  Identities=16%  Similarity=0.153  Sum_probs=50.0

Q ss_pred             HHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc
Q psy7829         359 SIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN  421 (511)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~  421 (511)
                      .+..++..  +.+.++.+|||||||+|.+++.+++..   .+|+++|+++++++.++++....
T Consensus        33 ~~~~il~~--l~l~~g~~VLDlGcGtG~~a~~La~~g---~~V~gvD~S~~ml~~Ar~~~~~~   90 (261)
T 3iv6_A           33 DRENDIFL--ENIVPGSTVAVIGASTRFLIEKALERG---ASVTVFDFSQRMCDDLAEALADR   90 (261)
T ss_dssp             HHHHHHHT--TTCCTTCEEEEECTTCHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTSSS
T ss_pred             HHHHHHHh--cCCCCcCEEEEEeCcchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHhc
Confidence            34566665  788899999999999999999999864   79999999999999999887654

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.67  E-value=4.9e-08  Score=99.37  Aligned_cols=105  Identities=16%  Similarity=0.168  Sum_probs=75.9

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---cccccccccccccccccccchhhhhcc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETIEIIPHILDLCYLNL  445 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~~~l~~~~d~i~~~l  445 (511)
                      +.+.++.+|||+|||+|..+..+++.++..++|+++|+++.+++.+.+|+   +..+++++++|.....+. +    ..-
T Consensus       255 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~-~----~~~  329 (450)
T 2yxl_A          255 LDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEI-I----GEE  329 (450)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSS-S----CSS
T ss_pred             cCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchh-h----ccC
Confidence            67789999999999999999999998854489999999988887766654   566788888876543211 0    001


Q ss_pred             cCCcEEEEEcC-CccH-------------------------HHHHHHHHhCCCcEEEEh
Q psy7829         446 HRGAKVLEIGS-GSGY-------------------------LATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       446 ~~~~~vLD~~~-g~g~-------------------------~~~~l~~~l~~~g~v~~~  478 (511)
                      ..+..++|..| |.|.                         +...+.+.++|||.++-.
T Consensus       330 ~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~  388 (450)
T 2yxl_A          330 VADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYT  388 (450)
T ss_dssp             CEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            12345667777 6664                         344566778999998743

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.66  E-value=3.4e-08  Score=96.12  Aligned_cols=134  Identities=13%  Similarity=0.105  Sum_probs=84.1

Q ss_pred             CHHHHHHHHHHhhcC-CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cc--cccccccc
Q psy7829         356 SERSIAHILDLCYLN-LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TN--HIDLIANE  429 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~--~v~~i~~d  429 (511)
                      +......+...  +. ..++.+|||+|||+|.+++.+++..   .+|+++|+++.+++.+++|+.   ..  +++++++|
T Consensus       137 q~~~~~~l~~~--~~~~~~~~~VLDlgcGtG~~sl~la~~g---a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D  211 (332)
T 2igt_A          137 QIVHWEWLKNA--VETADRPLKVLNLFGYTGVASLVAAAAG---AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICED  211 (332)
T ss_dssp             GHHHHHHHHHH--HHHSSSCCEEEEETCTTCHHHHHHHHTT---CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSC
T ss_pred             HHHHHHHHHHH--HHhcCCCCcEEEcccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECc
Confidence            33444344444  22 4568899999999999999999753   599999999999888887765   33  37888888


Q ss_pred             cccccc------ccchhhhhcccCC-----cEEEEEcCCccHHHHHHHHHhCCCcEEEEh---------HHHHHHHHHHH
Q psy7829         430 TIEIIP------HILDLCYLNLHRG-----AKVLEIGSGSGYLATLMAHLVGPTGHVTGL---------EHMMDIAIESI  489 (511)
Q Consensus       430 ~~~~l~------~~~d~i~~~l~~~-----~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---------~~ml~~a~~~~  489 (511)
                      ..+.++      ..+|.++.+.+.-     ..+.+..-..-.+...+.+.|+|+|.++..         ..+.+..++.+
T Consensus       212 ~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~  291 (332)
T 2igt_A          212 AMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETM  291 (332)
T ss_dssp             HHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHH
Confidence            766543      2466665543210     111111111223445566788999985543         34444555555


Q ss_pred             HhcCC
Q psy7829         490 ANIST  494 (511)
Q Consensus       490 ~~~~~  494 (511)
                      .+.|.
T Consensus       292 ~~~g~  296 (332)
T 2igt_A          292 RGAGG  296 (332)
T ss_dssp             TTSCS
T ss_pred             HHcCC
Confidence            55554

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.66  E-value=9.1e-08  Score=92.10  Aligned_cols=129  Identities=10%  Similarity=0.100  Sum_probs=86.5

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-------ccccccccccccccc----ccc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-------TNHIDLIANETIEII----PHI  437 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-------~~~v~~i~~d~~~~l----~~~  437 (511)
                      ...+++.+|||||||+|..+..+++.. +..+|+++|+++++++.+++++.       .++++++.+|..+.+    +..
T Consensus        91 ~~~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~  169 (304)
T 3bwc_A           91 CSHPKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNT  169 (304)
T ss_dssp             TTSSSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTC
T ss_pred             hcCCCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCc
Confidence            344678899999999999999998764 45799999999999998887762       456888888876553    345


Q ss_pred             chhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh-------HHHHHHHHHHHHhcCCCceEE
Q psy7829         438 LDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL-------EHMMDIAIESIANISTNHIDL  499 (511)
Q Consensus       438 ~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~-------~~ml~~a~~~~~~~~~~~i~~  499 (511)
                      +|.++.+...... .+...-+-.+...+.+.|+|+|.++..       ....+...+.+++.|+..+..
T Consensus       170 fDvIi~d~~~~~~-~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~  237 (304)
T 3bwc_A          170 YDVVIIDTTDPAG-PASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQY  237 (304)
T ss_dssp             EEEEEEECC----------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             eeEEEECCCCccc-cchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEE
Confidence            6766654322110 000001235566788899999998874       244555666666666644443

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.66  E-value=5.6e-09  Score=97.83  Aligned_cols=82  Identities=22%  Similarity=0.264  Sum_probs=64.3

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCH-------HHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIP-------ELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL  203 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~-------~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  203 (511)
                      ..++.+|||+|||+|..++.+++..   ++|+++|+++       .+++.|+++++.++    ...+++++++|+.+...
T Consensus        81 ~~~~~~VLDlgcG~G~~a~~lA~~g---~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~----~~~ri~~~~~d~~~~l~  153 (258)
T 2r6z_A           81 HTAHPTVWDATAGLGRDSFVLASLG---LTVTAFEQHPAVACLLSDGIRRALLNPETQD----TAARINLHFGNAAEQMP  153 (258)
T ss_dssp             GGGCCCEEETTCTTCHHHHHHHHTT---CCEEEEECCHHHHHHHHHHHHHHHHSHHHHH----HHTTEEEEESCHHHHHH
T ss_pred             cCCcCeEEEeeCccCHHHHHHHHhC---CEEEEEECChhhhHHHHHHHHHHHhHHHhhC----CccCeEEEECCHHHHHH
Confidence            4567899999999999999999863   4799999999       99999998877653    12359999999875321


Q ss_pred             --CC--CCccEEEecCCCCc
Q psy7829         204 --PE--APYDVIYYGGCVSE  219 (511)
Q Consensus       204 --~~--~~fD~I~~~~~~~~  219 (511)
                        ..  ++||+|++++++++
T Consensus       154 ~~~~~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          154 ALVKTQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HHHHHHCCCSEEEECCCC--
T ss_pred             hhhccCCCccEEEECCCCCC
Confidence              12  57999999987753

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.65  E-value=8.5e-08  Score=93.12  Aligned_cols=109  Identities=17%  Similarity=0.163  Sum_probs=75.2

Q ss_pred             HHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----ccccccccccccccc
Q psy7829         360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETIEIIP  435 (511)
Q Consensus       360 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~~l~  435 (511)
                      +..++..  +.+.++.+|||||||+|.++..+++..+  .+|+++|+++++++.++++...    ++++++.+|..+. +
T Consensus        79 ~~~~~~~--~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~  153 (318)
T 2fk8_A           79 VDLNLDK--LDLKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF-A  153 (318)
T ss_dssp             HHHHHTT--SCCCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC-C
T ss_pred             HHHHHHh--cCCCCcCEEEEEcccchHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC-C
Confidence            3444444  6778899999999999999999998874  7999999999999988877542    3477777775442 3


Q ss_pred             ccchhhhhcccCCcEEEE-Ec-CCccHHHHHHHHHhCCCcEEEEh
Q psy7829         436 HILDLCYLNLHRGAKVLE-IG-SGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       436 ~~~d~i~~~l~~~~~vLD-~~-~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..+|.++....     +. ++ .....+...+.+.|+|+|.++..
T Consensus       154 ~~fD~v~~~~~-----l~~~~~~~~~~~l~~~~~~LkpgG~l~~~  193 (318)
T 2fk8_A          154 EPVDRIVSIEA-----FEHFGHENYDDFFKRCFNIMPADGRMTVQ  193 (318)
T ss_dssp             CCCSEEEEESC-----GGGTCGGGHHHHHHHHHHHSCTTCEEEEE
T ss_pred             CCcCEEEEeCh-----HHhcCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            44444432210     00 00 11234556778889999998765

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.65  E-value=2.2e-08  Score=99.92  Aligned_cols=103  Identities=17%  Similarity=0.231  Sum_probs=75.8

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-----------cccccccccccccc------
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-----------TNHIDLIANETIEI------  433 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-----------~~~v~~i~~d~~~~------  433 (511)
                      +.++.+|||+|||+|..+..+++..+++++|+++|+++++++.+++++.           ..+++++.+|..+.      
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            5688999999999999999999998777899999999999998887753           26788888876542      


Q ss_pred             --ccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         434 --IPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       434 --l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                        .+..+|.++.+..-.     .......+...+.+.|+|+|.++..
T Consensus       161 ~~~~~~fD~V~~~~~l~-----~~~d~~~~l~~~~r~LkpgG~l~i~  202 (383)
T 4fsd_A          161 GVPDSSVDIVISNCVCN-----LSTNKLALFKEIHRVLRDGGELYFS  202 (383)
T ss_dssp             CCCTTCEEEEEEESCGG-----GCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCCCEEEEEEccchh-----cCCCHHHHHHHHHHHcCCCCEEEEE
Confidence              123455554432111     1112345667888999999998764

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.65  E-value=3.1e-08  Score=90.61  Aligned_cols=106  Identities=14%  Similarity=0.170  Sum_probs=73.9

Q ss_pred             HHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccccccccc-ccchh
Q psy7829         362 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIP-HILDL  440 (511)
Q Consensus       362 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l~-~~~d~  440 (511)
                      .++..  +...++.+|||+|||+|.++..+++..   .+|+++|+++++++.++++.. .+++++.+|..+... ..+|.
T Consensus        36 ~~l~~--~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~d~~~~~~~~~fD~  109 (220)
T 3hnr_A           36 DILED--VVNKSFGNVLEFGVGTGNLTNKLLLAG---RTVYGIEPSREMRMIAKEKLP-KEFSITEGDFLSFEVPTSIDT  109 (220)
T ss_dssp             HHHHH--HHHTCCSEEEEECCTTSHHHHHHHHTT---CEEEEECSCHHHHHHHHHHSC-TTCCEESCCSSSCCCCSCCSE
T ss_pred             HHHHH--hhccCCCeEEEeCCCCCHHHHHHHhCC---CeEEEEeCCHHHHHHHHHhCC-CceEEEeCChhhcCCCCCeEE
Confidence            44444  444688999999999999999998763   799999999999999988877 678888887654321 34444


Q ss_pred             hhhcccCCcEEEEEcCCccH--HHHHHHHHhCCCcEEEEh
Q psy7829         441 CYLNLHRGAKVLEIGSGSGY--LATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       441 i~~~l~~~~~vLD~~~g~g~--~~~~l~~~l~~~g~v~~~  478 (511)
                      ++...     ++..-.....  +...+.+.|+|+|.++..
T Consensus       110 v~~~~-----~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~  144 (220)
T 3hnr_A          110 IVSTY-----AFHHLTDDEKNVAIAKYSQLLNKGGKIVFA  144 (220)
T ss_dssp             EEEES-----CGGGSCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             EEECc-----chhcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence            43321     0000011111  557788889999998765

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.65  E-value=1.4e-08  Score=92.65  Aligned_cols=102  Identities=19%  Similarity=0.192  Sum_probs=71.4

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc-cccccccccccccc-cccchhhhhccc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST-NHIDLIANETIEII-PHILDLCYLNLH  446 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~-~~v~~i~~d~~~~l-~~~~d~i~~~l~  446 (511)
                      +...++.+|||+|||+|.++..+++..   .+|+++|+++++++.++++... .+++++.+|..+.. +..+|.++....
T Consensus        47 ~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~  123 (216)
T 3ofk_A           47 LSSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEV  123 (216)
T ss_dssp             TTTSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESC
T ss_pred             cccCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccH
Confidence            566678899999999999999998775   7999999999999998888763 47888888765443 233444433210


Q ss_pred             CCcEEEEEcCCcc---HHHHHHHHHhCCCcEEEEh
Q psy7829         447 RGAKVLEIGSGSG---YLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       447 ~~~~vLD~~~g~g---~~~~~l~~~l~~~g~v~~~  478 (511)
                           +..-....   .+...+.+.|+|+|.++..
T Consensus       124 -----l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  153 (216)
T 3ofk_A          124 -----LYYLEDMTQMRTAIDNMVKMLAPGGHLVFG  153 (216)
T ss_dssp             -----GGGSSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             -----HHhCCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence                 00001121   2356777889999998863

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.65  E-value=6.1e-08  Score=90.77  Aligned_cols=103  Identities=14%  Similarity=0.118  Sum_probs=74.9

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccc--cccchhhhhccc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEII--PHILDLCYLNLH  446 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l--~~~~d~i~~~l~  446 (511)
                      +...++.+|||+|||+|..+..+++.. + .+|+++|+++++++.++++....+++++.+|.....  +..+|.++....
T Consensus        40 ~~~~~~~~vLD~GcG~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  117 (253)
T 3g5l_A           40 LPDFNQKTVLDLGCGFGWHCIYAAEHG-A-KKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLA  117 (253)
T ss_dssp             CCCCTTCEEEEETCTTCHHHHHHHHTT-C-SEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESC
T ss_pred             hhccCCCEEEEECCCCCHHHHHHHHcC-C-CEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchh
Confidence            455589999999999999999998875 3 399999999999999999888778888888754421  234554443221


Q ss_pred             CCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         447 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       447 ~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      -.     .-...-.+...+.+.|+|+|.++..
T Consensus       118 l~-----~~~~~~~~l~~~~~~LkpgG~l~~~  144 (253)
T 3g5l_A          118 LH-----YIASFDDICKKVYINLKSSGSFIFS  144 (253)
T ss_dssp             GG-----GCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hh-----hhhhHHHHHHHHHHHcCCCcEEEEE
Confidence            00     0122345567788899999998775

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.64  E-value=2.9e-08  Score=100.27  Aligned_cols=99  Identities=19%  Similarity=0.280  Sum_probs=73.8

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccccccc---cccchhhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEII---PHILDLCY  442 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~l---~~~~d~i~  442 (511)
                      +.+.+|.+|||+|||+|..|+.+|+.+++.++|+++|+++++++.+++|+.   .. +.++++|.....   +..||   
T Consensus        97 L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD---  172 (464)
T 3m6w_A           97 LDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFH---  172 (464)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEE---
T ss_pred             cCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCC---
Confidence            567899999999999999999999998666899999999988887776654   45 777777765432   12233   


Q ss_pred             hcccCCcEEEEEcC-CccH-------------------------HHHHHHHHhCCCcEEEE
Q psy7829         443 LNLHRGAKVLEIGS-GSGY-------------------------LATLMAHLVGPTGHVTG  477 (511)
Q Consensus       443 ~~l~~~~~vLD~~~-g~g~-------------------------~~~~l~~~l~~~g~v~~  477 (511)
                            ..++|..| |.|.                         +...+++.|+|||.++-
T Consensus       173 ------~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~Lvy  227 (464)
T 3m6w_A          173 ------RVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVY  227 (464)
T ss_dssp             ------EEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             ------EEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence                  34667777 5654                         23445667899999864

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.64  E-value=3.5e-08  Score=92.68  Aligned_cols=111  Identities=14%  Similarity=0.144  Sum_probs=75.1

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccc-cc
Q psy7829         358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEII-PH  436 (511)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l-~~  436 (511)
                      +....++..  +...++.+|||+|||+|..+..+++.. |..+|+++|+++++++.++++  .++++++.+|..+.. +.
T Consensus        20 ~~~~~l~~~--~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~--~~~~~~~~~d~~~~~~~~   94 (259)
T 2p35_A           20 RPARDLLAQ--VPLERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADR--LPNTNFGKADLATWKPAQ   94 (259)
T ss_dssp             HHHHHHHTT--CCCSCCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHH--STTSEEEECCTTTCCCSS
T ss_pred             HHHHHHHHh--cCCCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHh--CCCcEEEECChhhcCccC
Confidence            444555555  667788999999999999999999987 568999999999999988877  456777777654322 22


Q ss_pred             cchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         437 ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       437 ~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .+|.++....-.     .......+...+.+.|+|+|.++..
T Consensus        95 ~fD~v~~~~~l~-----~~~~~~~~l~~~~~~L~pgG~l~~~  131 (259)
T 2p35_A           95 KADLLYANAVFQ-----WVPDHLAVLSQLMDQLESGGVLAVQ  131 (259)
T ss_dssp             CEEEEEEESCGG-----GSTTHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CcCEEEEeCchh-----hCCCHHHHHHHHHHhcCCCeEEEEE
Confidence            344443321100     0012334455666777888877654

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.64  E-value=4.4e-08  Score=92.98  Aligned_cols=107  Identities=16%  Similarity=0.136  Sum_probs=73.0

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---cccccccccccccccccccchhhhhcc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETIEIIPHILDLCYLNL  445 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~~~l~~~~d~i~~~l  445 (511)
                      +.+.++.+|||+|||+|..+..+++..+..++|+++|+++.+++.+++|+   +..+++++++|........ .  ...-
T Consensus        79 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~-~--~~~~  155 (274)
T 3ajd_A           79 LNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYL-L--KNEI  155 (274)
T ss_dssp             HCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHH-H--HTTC
T ss_pred             hCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhh-h--hccc
Confidence            56789999999999999999999998744489999999988888766664   4557888888765432110 0  0011


Q ss_pred             cCCcEEEEEcC-CccH---------------------HHHHHHHHhCCCcEEEEh
Q psy7829         446 HRGAKVLEIGS-GSGY---------------------LATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       446 ~~~~~vLD~~~-g~g~---------------------~~~~l~~~l~~~g~v~~~  478 (511)
                      ..+..++|..| |.|.                     +...+.+.++|||.++-.
T Consensus       156 ~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~s  210 (274)
T 3ajd_A          156 FFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYS  210 (274)
T ss_dssp             CEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence            22345667777 4443                     344566788999998763

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.64  E-value=5.5e-08  Score=91.62  Aligned_cols=110  Identities=18%  Similarity=0.225  Sum_probs=77.3

Q ss_pred             CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccc
Q psy7829         355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEII  434 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l  434 (511)
                      ..+.....++..  +...++.+|||||||+|..+..+++   +..+|+++|+++.+++.++++.   +++++.+|..+..
T Consensus        18 ~~~~~~~~l~~~--~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~d~~~~~   89 (261)
T 3ege_A           18 PDIRIVNAIINL--LNLPKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVMRQQAVVHP---QVEWFTGYAENLA   89 (261)
T ss_dssp             CCHHHHHHHHHH--HCCCTTCEEEEETCTTSHHHHHHHT---TTCEEEEECSCHHHHHSSCCCT---TEEEECCCTTSCC
T ss_pred             ccHHHHHHHHHH--hCCCCCCEEEEEcCcccHHHHHHHh---CCCEEEEEeCCHHHHHHHHhcc---CCEEEECchhhCC
Confidence            355666677666  6778899999999999999999986   4489999999999988776665   7888877754421


Q ss_pred             --cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         435 --PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       435 --~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                        +..+|.++....-..     -.....+...+.+.|+ +|.++.+
T Consensus        90 ~~~~~fD~v~~~~~l~~-----~~~~~~~l~~~~~~Lk-gG~~~~~  129 (261)
T 3ege_A           90 LPDKSVDGVISILAIHH-----FSHLEKSFQEMQRIIR-DGTIVLL  129 (261)
T ss_dssp             SCTTCBSEEEEESCGGG-----CSSHHHHHHHHHHHBC-SSCEEEE
T ss_pred             CCCCCEeEEEEcchHhh-----ccCHHHHHHHHHHHhC-CcEEEEE
Confidence              234555544321110     0233455677888888 8876654

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.64  E-value=6.1e-08  Score=98.15  Aligned_cols=72  Identities=18%  Similarity=0.296  Sum_probs=57.2

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccccccc
Q psy7829         358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEII  434 (511)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~l  434 (511)
                      ..+..++..  +.+.++.+|||+|||+|.+++.+|+..   .+|+|+|+++++++.+++|..   ..|++++.+|..+.+
T Consensus       273 ~l~~~~~~~--l~~~~~~~VLDlgcG~G~~~~~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l  347 (433)
T 1uwv_A          273 KMVARALEW--LDVQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV  347 (433)
T ss_dssp             HHHHHHHHH--HTCCTTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCC
T ss_pred             HHHHHHHHh--hcCCCCCEEEECCCCCCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHh
Confidence            344445554  566788999999999999999999773   899999999998888877764   457889988876643

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=98.63  E-value=2.6e-08  Score=89.95  Aligned_cols=114  Identities=13%  Similarity=0.178  Sum_probs=73.2

Q ss_pred             CCCHHHHHHHHHHhhcCCC-CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccc
Q psy7829         354 PSSERSIAHILDLCYLNLH-RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANE  429 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~-~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d  429 (511)
                      |.+......++..  +... ++.+|||+|||+|.+++.+++...  .+|+++|+++++++.+++|+.   ..+++++++|
T Consensus        36 p~~~~~~~~l~~~--l~~~~~~~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D  111 (202)
T 2fpo_A           36 PTTDRVRETLFNW--LAPVIVDAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSN  111 (202)
T ss_dssp             --CHHHHHHHHHH--HHHHHTTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSC
T ss_pred             CCHHHHHHHHHHH--HHhhcCCCeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECC
Confidence            4455666555554  3322 688999999999999998776542  599999999999988877764   3578888888


Q ss_pred             cccccc---ccchhhhhcccCCcEEEEEcCCc-cHHHHHHHH--HhCCCcEEEEh
Q psy7829         430 TIEIIP---HILDLCYLNLHRGAKVLEIGSGS-GYLATLMAH--LVGPTGHVTGL  478 (511)
Q Consensus       430 ~~~~l~---~~~d~i~~~l~~~~~vLD~~~g~-g~~~~~l~~--~l~~~g~v~~~  478 (511)
                      ..+.++   ..+|.++.+..-.       .+. ......+.+  .|+|+|.++..
T Consensus       112 ~~~~~~~~~~~fD~V~~~~p~~-------~~~~~~~l~~l~~~~~L~pgG~l~i~  159 (202)
T 2fpo_A          112 AMSFLAQKGTPHNIVFVDPPFR-------RGLLEETINLLEDNGWLADEALIYVE  159 (202)
T ss_dssp             HHHHHSSCCCCEEEEEECCSSS-------TTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             HHHHHhhcCCCCCEEEECCCCC-------CCcHHHHHHHHHhcCccCCCcEEEEE
Confidence            665433   3455544432200       111 122333433  28899988755

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.63  E-value=5.9e-08  Score=92.10  Aligned_cols=67  Identities=28%  Similarity=0.489  Sum_probs=53.5

Q ss_pred             HHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHH------HHHHHHhhccc----ccccccccc
Q psy7829         361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMD------IAIESIANIST----NHIDLIANE  429 (511)
Q Consensus       361 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~------~~~~~~~~~~~----~~v~~i~~d  429 (511)
                      .+++..  +.+.++.+|||||||+|.++..+++..+|+.+|+++|++++      +++.+++++..    ++++++.+|
T Consensus        33 ~~l~~~--~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d  109 (275)
T 3bkx_A           33 LAIAEA--WQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNT  109 (275)
T ss_dssp             HHHHHH--HTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSC
T ss_pred             HHHHHH--cCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECC
Confidence            344444  67889999999999999999999998877789999999876      67776666542    467777776

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.63  E-value=6.3e-08  Score=92.82  Aligned_cols=47  Identities=26%  Similarity=0.343  Sum_probs=41.5

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS  419 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~  419 (511)
                      .++.+|||||||+|..++.+++.+ +..+|+|+|+++.+++.+++++.
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~-~~~~v~gvDis~~~i~~A~~~~~   91 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKW-GPSRMVGLDIDSRLIHSARQNIR   91 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHT-CCSEEEEEESCHHHHHHHHHTC-
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHH
Confidence            368999999999999999999997 34799999999999999888765

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.62  E-value=4.1e-08  Score=94.37  Aligned_cols=113  Identities=18%  Similarity=0.115  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHhhc----CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c-cccccccc
Q psy7829         357 ERSIAHILDLCYL----NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T-NHIDLIAN  428 (511)
Q Consensus       357 ~~~~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~-~~v~~i~~  428 (511)
                      ...+..++..  +    .+.++.+|||||||+|..+..+++..+  .+|+++|+++.+++.++++..   . .+++++.+
T Consensus        64 ~~~~~~l~~~--l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~  139 (297)
T 2o57_A           64 LRTDEWLASE--LAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYG  139 (297)
T ss_dssp             HHHHHHHHHH--HHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEEC
T ss_pred             HHHHHHHHHH--hhhccCCCCCCEEEEeCCCCCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEc
Confidence            3445555665  5    678899999999999999999998874  699999999999888777653   2 46788877


Q ss_pred             cccccc--cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         429 ETIEII--PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       429 d~~~~l--~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      |..+..  +..+|.++....-.     .......+...+.+.|+|+|.++..
T Consensus       140 d~~~~~~~~~~fD~v~~~~~l~-----~~~~~~~~l~~~~~~LkpgG~l~~~  186 (297)
T 2o57_A          140 SFLEIPCEDNSYDFIWSQDAFL-----HSPDKLKVFQECARVLKPRGVMAIT  186 (297)
T ss_dssp             CTTSCSSCTTCEEEEEEESCGG-----GCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CcccCCCCCCCEeEEEecchhh-----hcCCHHHHHHHHHHHcCCCeEEEEE
Confidence            754421  22344433221000     0011245567788889999988765

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.62  E-value=8.7e-08  Score=89.62  Aligned_cols=48  Identities=19%  Similarity=0.165  Sum_probs=41.0

Q ss_pred             CCCCEEEEEeccccHHHHHHHHH--hCCCcEEEEEcCCHHHHHHHHhhccc
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHL--VGPTGHVTGLEHMMDIAIESIANIST  420 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~--~~~~~~v~~id~~~~~~~~~~~~~~~  420 (511)
                      .++.+|||+|||+|.+++.+++.  . +..+|+|+|+++++++.+++++..
T Consensus        50 ~~~~~vLD~gcGsG~~~~~la~~~~~-~~~~v~gvDis~~~l~~A~~~~~~   99 (250)
T 1o9g_A           50 DGPVTLWDPCCGSGYLLTVLGLLHRR-SLRQVIASDVDPAPLELAAKNLAL   99 (250)
T ss_dssp             CSCEEEEETTCTTSHHHHHHHHHTGG-GEEEEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHhcc-CCCeEEEEECCHHHHHHHHHHHHH
Confidence            46789999999999999999987  4 447999999999999888876653

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.62  E-value=2.1e-08  Score=91.70  Aligned_cols=115  Identities=13%  Similarity=0.203  Sum_probs=74.7

Q ss_pred             CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc--------ccccc
Q psy7829         355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN--------HIDLI  426 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~--------~v~~i  426 (511)
                      ..+.....++..  +...++.+|||+|||+|.++..+++.. +..+|+++|+++++++.+++++...        +++++
T Consensus        13 ~~~~~~~~l~~~--l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~   89 (219)
T 3jwg_A           13 LNQQRLGTVVAV--LKSVNAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLF   89 (219)
T ss_dssp             HHHHHHHHHHHH--HHHTTCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEE
T ss_pred             chHHHHHHHHHH--HhhcCCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEE
Confidence            344555555555  455678999999999999999998765 5579999999999999988876532        67777


Q ss_pred             cccccccc--cccchhhhhcccCCcEEEEEcCCc---cHHHHHHHHHhCCCcEEEEh
Q psy7829         427 ANETIEII--PHILDLCYLNLHRGAKVLEIGSGS---GYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       427 ~~d~~~~l--~~~~d~i~~~l~~~~~vLD~~~g~---g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .+|.....  +..+|.++....     +.. ...   ..+...+.+.|+|+|.++..
T Consensus        90 ~~d~~~~~~~~~~fD~V~~~~~-----l~~-~~~~~~~~~l~~~~~~LkpgG~~i~~  140 (219)
T 3jwg_A           90 QSSLVYRDKRFSGYDAATVIEV-----IEH-LDENRLQAFEKVLFEFTRPQTVIVST  140 (219)
T ss_dssp             ECCSSSCCGGGTTCSEEEEESC-----GGG-CCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred             eCcccccccccCCCCEEEEHHH-----HHh-CCHHHHHHHHHHHHHhhCCCEEEEEc
Confidence            77753211  123444332110     000 011   23456677888998866654

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.61  E-value=5.5e-08  Score=91.58  Aligned_cols=114  Identities=11%  Similarity=0.007  Sum_probs=78.3

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccc----ccccccccccccc-ccchhhhhc
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH----IDLIANETIEIIP-HILDLCYLN  444 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~----v~~i~~d~~~~l~-~~~d~i~~~  444 (511)
                      .+++|++|||+|||+|++++.+|+..+  .+|+++|+++..++.+.+|+..++    ++++++|+.+... ..+|.+.++
T Consensus       122 ~~~~g~~VlD~~aG~G~~~i~~a~~g~--~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~  199 (278)
T 3k6r_A          122 VAKPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMG  199 (278)
T ss_dssp             HCCTTCEEEETTCTTTTTTHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEEC
T ss_pred             hcCCCCEEEEecCcCcHHHHHHHHhcC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEEC
Confidence            357899999999999999999998753  689999999988888777776433    6778888766543 345554444


Q ss_pred             ccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh---------HHHHHHHHHHHHhcCC
Q psy7829         445 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---------EHMMDIAIESIANIST  494 (511)
Q Consensus       445 l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---------~~ml~~a~~~~~~~~~  494 (511)
                      +         ..+.-.+.....+.+++||.+...         ....+..++.....|.
T Consensus       200 ~---------p~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~  249 (278)
T 3k6r_A          200 Y---------VVRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGY  249 (278)
T ss_dssp             C---------CSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTC
T ss_pred             C---------CCcHHHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCC
Confidence            3         333334445566788998866432         2234555555555554

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.61  E-value=4.3e-08  Score=92.92  Aligned_cols=112  Identities=21%  Similarity=0.287  Sum_probs=74.4

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----cccccccccccccc
Q psy7829         358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETIEI  433 (511)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~~~  433 (511)
                      ..+..++..  +.+.++.+|||||||+|..+..+++..+  .+|+++|+++++++.++++..    .++++++.+|..+.
T Consensus        48 ~~~~~l~~~--~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  123 (273)
T 3bus_A           48 RLTDEMIAL--LDVRSGDRVLDVGCGIGKPAVRLATARD--VRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDL  123 (273)
T ss_dssp             HHHHHHHHH--SCCCTTCEEEEESCTTSHHHHHHHHHSC--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred             HHHHHHHHh--cCCCCCCEEEEeCCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccC
Confidence            334455554  6778999999999999999999998764  899999999999888777654    23577777765432


Q ss_pred             --ccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         434 --IPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       434 --l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                        .+..+|.++....     +........+...+.+.|+|+|.++..
T Consensus       124 ~~~~~~fD~v~~~~~-----l~~~~~~~~~l~~~~~~L~pgG~l~i~  165 (273)
T 3bus_A          124 PFEDASFDAVWALES-----LHHMPDRGRALREMARVLRPGGTVAIA  165 (273)
T ss_dssp             CSCTTCEEEEEEESC-----TTTSSCHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CCCCCCccEEEEech-----hhhCCCHHHHHHHHHHHcCCCeEEEEE
Confidence              1233444432210     000012334556677788888887654

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.60  E-value=3.6e-08  Score=93.65  Aligned_cols=104  Identities=19%  Similarity=0.288  Sum_probs=74.3

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccccccc--cccchhhhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEII--PHILDLCYL  443 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~l--~~~~d~i~~  443 (511)
                      ..+.++.+|||||||+|..+..+++.. |..+|+++|+++.+++.++++..   .++++++.+|..+..  +..+|.++.
T Consensus        33 ~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  111 (276)
T 3mgg_A           33 TVYPPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFV  111 (276)
T ss_dssp             CCCCTTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEE
T ss_pred             ccCCCCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEE
Confidence            456789999999999999999999885 66899999999998888777653   457888877755432  234454443


Q ss_pred             cccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       444 ~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..     ++........+...+.+.|+|+|.++..
T Consensus       112 ~~-----~l~~~~~~~~~l~~~~~~L~pgG~l~~~  141 (276)
T 3mgg_A          112 CF-----VLEHLQSPEEALKSLKKVLKPGGTITVI  141 (276)
T ss_dssp             ES-----CGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ec-----hhhhcCCHHHHHHHHHHHcCCCcEEEEE
Confidence            21     1111123345667788899999998763

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=98.60  E-value=2.9e-08  Score=89.61  Aligned_cols=110  Identities=16%  Similarity=0.187  Sum_probs=71.0

Q ss_pred             CHHHHHHHHHHhhcCC-CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c--ccccccccc
Q psy7829         356 SERSIAHILDLCYLNL-HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T--NHIDLIANE  429 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~--~~v~~i~~d  429 (511)
                      +......++..  +.. .++.+|||+|||+|.+++.++... . .+|+++|+++++++.+++|+.   .  .+++++++|
T Consensus        37 ~~~~~~~l~~~--l~~~~~~~~vLDlGcGtG~~~~~~~~~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d  112 (201)
T 2ift_A           37 GDRVKETLFNW--LMPYIHQSECLDGFAGSGSLGFEALSRQ-A-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQS  112 (201)
T ss_dssp             -CHHHHHHHHH--HHHHHTTCEEEETTCTTCHHHHHHHHTT-C-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSC
T ss_pred             HHHHHHHHHHH--HHHhcCCCeEEEcCCccCHHHHHHHHcc-C-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECC
Confidence            33444444444  222 268899999999999999877654 2 699999999999988877764   3  578888888


Q ss_pred             cccccc----cc-chhhhhcccCCcEEEEEcCCccHH---HHHH--HHHhCCCcEEEEh
Q psy7829         430 TIEIIP----HI-LDLCYLNLHRGAKVLEIGSGSGYL---ATLM--AHLVGPTGHVTGL  478 (511)
Q Consensus       430 ~~~~l~----~~-~d~i~~~l~~~~~vLD~~~g~g~~---~~~l--~~~l~~~g~v~~~  478 (511)
                      ..+.++    .. +|.++.+..         ...+..   ...+  .+.|+|+|.++..
T Consensus       113 ~~~~~~~~~~~~~fD~I~~~~~---------~~~~~~~~~l~~~~~~~~LkpgG~l~i~  162 (201)
T 2ift_A          113 SLDFLKQPQNQPHFDVVFLDPP---------FHFNLAEQAISLLCENNWLKPNALIYVE  162 (201)
T ss_dssp             HHHHTTSCCSSCCEEEEEECCC---------SSSCHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             HHHHHHhhccCCCCCEEEECCC---------CCCccHHHHHHHHHhcCccCCCcEEEEE
Confidence            665433    23 555544322         112222   2233  2338999988765

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.59  E-value=3.9e-08  Score=93.91  Aligned_cols=117  Identities=15%  Similarity=0.260  Sum_probs=80.1

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc--ccccccccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST--NHIDLIANETIEI  433 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~--~~v~~i~~d~~~~  433 (511)
                      .+.....++.. ...+.++.+|||||||+|..+..+++..++..+|+++|+++.+++.++++...  .+++++.+|..+.
T Consensus         6 ~~~~~~~~~~~-~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~   84 (284)
T 3gu3_A            6 NDDYVSFLVNT-VWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI   84 (284)
T ss_dssp             CHHHHHHHHHT-TSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTC
T ss_pred             chHHHHHHHHH-HhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhc
Confidence            34455555554 34677899999999999999999998873347999999999999988877542  3688888876543


Q ss_pred             c-cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         434 I-PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       434 l-~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      . +..+|.++....     +..-.....+...+.+.|+|+|.++..
T Consensus        85 ~~~~~fD~v~~~~~-----l~~~~~~~~~l~~~~~~LkpgG~l~~~  125 (284)
T 3gu3_A           85 ELNDKYDIAICHAF-----LLHMTTPETMLQKMIHSVKKGGKIICF  125 (284)
T ss_dssp             CCSSCEEEEEEESC-----GGGCSSHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CcCCCeeEEEECCh-----hhcCCCHHHHHHHHHHHcCCCCEEEEE
Confidence            2 234554443221     000112345567788889999998854

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.59  E-value=4.8e-08  Score=91.15  Aligned_cols=73  Identities=15%  Similarity=0.271  Sum_probs=62.6

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-cccccccccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNHIDLIANETIEI  433 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~~  433 (511)
                      .+..+.+++..  +.+.++++|||||||+|.+|..+++..   .+|+++|++++++..+++++. ..+++++++|..+.
T Consensus        14 d~~i~~~iv~~--~~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~   87 (255)
T 3tqs_A           14 DSFVLQKIVSA--IHPQKTDTLVEIGPGRGALTDYLLTEC---DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQF   87 (255)
T ss_dssp             CHHHHHHHHHH--HCCCTTCEEEEECCTTTTTHHHHTTTS---SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTC
T ss_pred             CHHHHHHHHHh--cCCCCcCEEEEEcccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhC
Confidence            35677778887  788899999999999999999999765   799999999999999888876 46899999987664

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.59  E-value=1.4e-07  Score=86.16  Aligned_cols=114  Identities=13%  Similarity=0.160  Sum_probs=74.6

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc--------cccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN--------HIDLIA  427 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~--------~v~~i~  427 (511)
                      .+.....++..  +...++.+|||+|||+|.++..+++.. +..+|+++|+++++++.+++++...        +++++.
T Consensus        14 ~~~~~~~l~~~--l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~   90 (217)
T 3jwh_A           14 NQQRMNGVVAA--LKQSNARRVIDLGCGQGNLLKILLKDS-FFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQ   90 (217)
T ss_dssp             HHHHHHHHHHH--HHHTTCCEEEEETCTTCHHHHHHHHCT-TCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEE
T ss_pred             HHHHHHHHHHH--HHhcCCCEEEEeCCCCCHHHHHHHhhC-CCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEe
Confidence            44555566565  555688999999999999999999765 5579999999999999988876522        577777


Q ss_pred             ccccccc--cccchhhhhcccCCcEEEEEcCCc---cHHHHHHHHHhCCCcEEEEh
Q psy7829         428 NETIEII--PHILDLCYLNLHRGAKVLEIGSGS---GYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       428 ~d~~~~l--~~~~d~i~~~l~~~~~vLD~~~g~---g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +|.....  ...+|.++....     +.. ...   ..+...+.+.|+|+|.++..
T Consensus        91 ~d~~~~~~~~~~fD~v~~~~~-----l~~-~~~~~~~~~l~~~~~~LkpgG~li~~  140 (217)
T 3jwh_A           91 GALTYQDKRFHGYDAATVIEV-----IEH-LDLSRLGAFERVLFEFAQPKIVIVTT  140 (217)
T ss_dssp             CCTTSCCGGGCSCSEEEEESC-----GGG-CCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred             CCcccccccCCCcCEEeeHHH-----HHc-CCHHHHHHHHHHHHHHcCCCEEEEEc
Confidence            7642211  123444332110     000 011   23455677788998876655

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.59  E-value=2.8e-08  Score=90.05  Aligned_cols=96  Identities=17%  Similarity=0.231  Sum_probs=68.6

Q ss_pred             CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccccccccc-ccchhhhhcccCC
Q psy7829         373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEIIP-HILDLCYLNLHRG  448 (511)
Q Consensus       373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~l~-~~~d~i~~~l~~~  448 (511)
                      ++.+|||+|||+|..+..+++.. |..+|+++|+++.+++.++++..   ..+++++.+|..+..+ ..+|.++.+.-  
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~--  141 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF--  141 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS--
T ss_pred             CCCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc--
Confidence            58899999999999999999886 56899999999988887776643   4557888777655432 33454443210  


Q ss_pred             cEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         449 AKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       449 ~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                             .....+...+.+.++|+|.++..
T Consensus       142 -------~~~~~~l~~~~~~L~~gG~l~~~  164 (207)
T 1jsx_A          142 -------ASLNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             -------SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred             -------CCHHHHHHHHHHhcCCCcEEEEE
Confidence                   11234455666778999998776

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.59  E-value=5.9e-08  Score=89.68  Aligned_cols=113  Identities=11%  Similarity=0.116  Sum_probs=76.1

Q ss_pred             HHHHHHHHHhhcC-CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc-ccccccccccccccc
Q psy7829         358 RSIAHILDLCYLN-LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST-NHIDLIANETIEIIP  435 (511)
Q Consensus       358 ~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~-~~v~~i~~d~~~~l~  435 (511)
                      .....++..  +. ..++.+|||+|||+|..+..+++.. |..+|+++|+++++++.++++... .+++++.+|..+...
T Consensus        30 ~~~~~~~~~--~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~  106 (234)
T 3dtn_A           30 DFYGVSVSI--ASVDTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDF  106 (234)
T ss_dssp             HHHHHHHHT--CCCSCSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCC
T ss_pred             HHHHHHHHH--hhcCCCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCC
Confidence            334444444  33 5678999999999999999999887 568999999999999998888763 368888777654321


Q ss_pred             -ccchhhhhcccCCcEEEEEcCCcc--HHHHHHHHHhCCCcEEEEh
Q psy7829         436 -HILDLCYLNLHRGAKVLEIGSGSG--YLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       436 -~~~d~i~~~l~~~~~vLD~~~g~g--~~~~~l~~~l~~~g~v~~~  478 (511)
                       ..+|.++....     +..-....  .+...+.+.|+|+|.++..
T Consensus       107 ~~~fD~v~~~~~-----l~~~~~~~~~~~l~~~~~~LkpgG~l~~~  147 (234)
T 3dtn_A          107 EEKYDMVVSALS-----IHHLEDEDKKELYKRSYSILKESGIFINA  147 (234)
T ss_dssp             CSCEEEEEEESC-----GGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCceEEEEeCc-----cccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence             33444333210     00000011  2456778889999998864

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.58  E-value=8.1e-08  Score=89.20  Aligned_cols=100  Identities=10%  Similarity=0.080  Sum_probs=73.2

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccc--cccchhhhhcccCC
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEII--PHILDLCYLNLHRG  448 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l--~~~~d~i~~~l~~~  448 (511)
                      ++++.+|||+|||+|.++..+++..   .+|+++|+++.+++.+.++....+++++.+|..+..  +..+|.++....-.
T Consensus        51 ~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  127 (242)
T 3l8d_A           51 VKKEAEVLDVGCGDGYGTYKLSRTG---YKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLE  127 (242)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTT
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHh
Confidence            4688999999999999999999873   799999999999999999877788888888755431  23455444321100


Q ss_pred             cEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         449 AKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       449 ~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                           .......+...+.+.|+|+|.++..
T Consensus       128 -----~~~~~~~~l~~~~~~L~pgG~l~i~  152 (242)
T 3l8d_A          128 -----WTEEPLRALNEIKRVLKSDGYACIA  152 (242)
T ss_dssp             -----SSSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -----hccCHHHHHHHHHHHhCCCeEEEEE
Confidence                 0112335567788889999988765

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.58  E-value=2.4e-07  Score=97.61  Aligned_cols=128  Identities=13%  Similarity=-0.047  Sum_probs=85.0

Q ss_pred             CcccchhHHHHHHHHH----HhhcCCCCCEEEEEcCCccHHHHHHHHHhC--CCceEEEEeCCHHHHHHH--HHHHhccC
Q psy7829         111 AGVMNAPNQIADAAEN----LKLHLVDGAKVLDLGSGSGYQTCVFAHMVG--PTGKVIGVEHIPELIEAS--LRNISKGN  182 (511)
Q Consensus       111 ~~~~~~p~~~~~~~~~----l~~~~~~~~~vLDiG~G~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a--~~~~~~~~  182 (511)
                      |...+.+.+...+++.    +.....++.+|||.|||+|.+...+++..+  ...+++|+|+++.+++.|  +.++..++
T Consensus       295 GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~  374 (878)
T 3s1s_A          295 GVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQ  374 (878)
T ss_dssp             BSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTT
T ss_pred             ceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhh
Confidence            3344444566666665    222234688999999999999999998763  136799999999999999  55554321


Q ss_pred             CCcCCCCCeEEEEccCCCC-CCCCCCccEEEecCCCCc-----------------------------------hHHHHHh
Q psy7829         183 KDLLDSGRVRIVEADAREG-YLPEAPYDVIYYGGCVSE-----------------------------------VPSRVLN  226 (511)
Q Consensus       183 ~~~~~~~~v~~~~~d~~~~-~~~~~~fD~I~~~~~~~~-----------------------------------~~~~~~~  226 (511)
                      .. .+.....+...|+... ......||+|++|+|+-.                                   +...+.+
T Consensus       375 Ll-hGi~~~~I~~dD~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~  453 (878)
T 3s1s_A          375 LV-SSNNAPTITGEDVCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTE  453 (878)
T ss_dssp             TC-BTTBCCEEECCCGGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHH
T ss_pred             hh-cCCCcceEEecchhcccccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHH
Confidence            00 0122345555565542 112467999999999821                                   1245778


Q ss_pred             hcccCcEEEEEEc
Q psy7829         227 QLKKGGRILAPIG  239 (511)
Q Consensus       227 ~LkpgG~l~~~~~  239 (511)
                      .|+|||++++.+.
T Consensus       454 lLKpGGrLAfIlP  466 (878)
T 3s1s_A          454 LVQDGTVISAIMP  466 (878)
T ss_dssp             HSCTTCEEEEEEE
T ss_pred             hcCCCcEEEEEEC
Confidence            8999999998654

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.58  E-value=9.9e-08  Score=90.95  Aligned_cols=84  Identities=19%  Similarity=0.296  Sum_probs=65.4

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----ccccccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETI  431 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~  431 (511)
                      .+..+.+++..  +.+.++++|||||||+|.++..+++..   .+|+++|+++.+++.+.++...    ++++++++|..
T Consensus        13 d~~i~~~i~~~--~~~~~~~~VLDiG~G~G~lt~~L~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~   87 (285)
T 1zq9_A           13 NPLIINSIIDK--AALRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVL   87 (285)
T ss_dssp             CHHHHHHHHHH--TCCCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTT
T ss_pred             CHHHHHHHHHh--cCCCCCCEEEEEcCcccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEccee
Confidence            45677777777  777899999999999999999999885   7999999999999988877642    57888888876


Q ss_pred             ccccccchhhhhc
Q psy7829         432 EIIPHILDLCYLN  444 (511)
Q Consensus       432 ~~l~~~~d~i~~~  444 (511)
                      +.-...+|.++.+
T Consensus        88 ~~~~~~fD~vv~n  100 (285)
T 1zq9_A           88 KTDLPFFDTCVAN  100 (285)
T ss_dssp             TSCCCCCSEEEEE
T ss_pred             cccchhhcEEEEe
Confidence            5322234444443

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.57  E-value=6.8e-08  Score=91.93  Aligned_cols=105  Identities=18%  Similarity=0.259  Sum_probs=72.1

Q ss_pred             HHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccc-cccchh
Q psy7829         362 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEII-PHILDL  440 (511)
Q Consensus       362 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l-~~~~d~  440 (511)
                      .++..  +.+.++.+|||||||+|.++..+++   +..+|+++|+++.+++.++++.  +++.++.+|..... +..+|.
T Consensus        48 ~l~~~--l~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~--~~~~~~~~d~~~~~~~~~fD~  120 (279)
T 3ccf_A           48 DLLQL--LNPQPGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIEKARQNY--PHLHFDVADARNFRVDKPLDA  120 (279)
T ss_dssp             HHHHH--HCCCTTCEEEEETCTTSHHHHHHHH---TTCEEEEEESCHHHHHHHHHHC--TTSCEEECCTTTCCCSSCEEE
T ss_pred             HHHHH--hCCCCCCEEEEecCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHhhC--CCCEEEECChhhCCcCCCcCE
Confidence            34444  5667899999999999999999987   3489999999999999988876  56777777654321 233444


Q ss_pred             hhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         441 CYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       441 i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ++....-.     .-.....+...+.+.|+|+|.++..
T Consensus       121 v~~~~~l~-----~~~d~~~~l~~~~~~LkpgG~l~~~  153 (279)
T 3ccf_A          121 VFSNAMLH-----WVKEPEAAIASIHQALKSGGRFVAE  153 (279)
T ss_dssp             EEEESCGG-----GCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEcchhh-----hCcCHHHHHHHHHHhcCCCcEEEEE
Confidence            43321100     0012334567778888999888764

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.57  E-value=8.9e-08  Score=90.56  Aligned_cols=75  Identities=19%  Similarity=0.279  Sum_probs=62.6

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHhhcccccccccccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGP-TGHVTGLEHMMDIAIESIANISTNHIDLIANETIEI  433 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~-~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~  433 (511)
                      .+..+.+++..  +.+.++++|||||||+|.+|..+++..+. +++|+++|++++++..++++. ..+++++++|..+.
T Consensus        27 d~~i~~~iv~~--~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~~~v~~i~~D~~~~  102 (279)
T 3uzu_A           27 DHGVIDAIVAA--IRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-GELLELHAGDALTF  102 (279)
T ss_dssp             CHHHHHHHHHH--HCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-GGGEEEEESCGGGC
T ss_pred             CHHHHHHHHHh--cCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-CCCcEEEECChhcC
Confidence            35667777777  77889999999999999999999998732 255999999999999988875 66899999987664

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.57  E-value=5.9e-08  Score=93.16  Aligned_cols=84  Identities=20%  Similarity=0.321  Sum_probs=61.7

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---cccccccccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETIE  432 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~~  432 (511)
                      .+..+..++..  +.+.++++|||||||+|.++..+++..   .+|+|+|+++.+++.++++.   +.++++++++|..+
T Consensus        27 ~~~i~~~i~~~--~~~~~~~~VLDiG~G~G~lt~~La~~~---~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~  101 (299)
T 2h1r_A           27 NPGILDKIIYA--AKIKSSDIVLEIGCGTGNLTVKLLPLA---KKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIK  101 (299)
T ss_dssp             CHHHHHHHHHH--HCCCTTCEEEEECCTTSTTHHHHTTTS---SEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCS
T ss_pred             CHHHHHHHHHh--cCCCCcCEEEEEcCcCcHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhh
Confidence            45667777776  677889999999999999999998763   79999999999998887765   34678999888766


Q ss_pred             cccccchhhhhc
Q psy7829         433 IIPHILDLCYLN  444 (511)
Q Consensus       433 ~l~~~~d~i~~~  444 (511)
                      .....+|.++.+
T Consensus       102 ~~~~~~D~Vv~n  113 (299)
T 2h1r_A          102 TVFPKFDVCTAN  113 (299)
T ss_dssp             SCCCCCSEEEEE
T ss_pred             CCcccCCEEEEc
Confidence            433344544443

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.56  E-value=1.5e-07  Score=87.33  Aligned_cols=103  Identities=17%  Similarity=0.200  Sum_probs=73.3

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccc--cccchhhhhccc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEII--PHILDLCYLNLH  446 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l--~~~~d~i~~~l~  446 (511)
                      +...++.+|||+|||+|..+..+++.. . .+|+++|+++++++.++++....+++++.+|..+..  +..+|.++....
T Consensus        39 ~~~~~~~~vLdiG~G~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  116 (243)
T 3bkw_A           39 LPEVGGLRIVDLGCGFGWFCRWAHEHG-A-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLA  116 (243)
T ss_dssp             SCCCTTCEEEEETCTTCHHHHHHHHTT-C-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESC
T ss_pred             ccccCCCEEEEEcCcCCHHHHHHHHCC-C-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEecc
Confidence            566689999999999999999998763 2 399999999999999999887777888877754422  233444433211


Q ss_pred             CCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         447 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       447 ~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      -..     -.....+...+.+.|+|+|.++..
T Consensus       117 l~~-----~~~~~~~l~~~~~~L~pgG~l~~~  143 (243)
T 3bkw_A          117 LHY-----VEDVARLFRTVHQALSPGGHFVFS  143 (243)
T ss_dssp             GGG-----CSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccc-----cchHHHHHHHHHHhcCcCcEEEEE
Confidence            000     012344567778889999988765

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.56  E-value=1.2e-07  Score=87.39  Aligned_cols=103  Identities=17%  Similarity=0.202  Sum_probs=65.7

Q ss_pred             HHHHHHHHhhcCCC-CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc------cccccccccccc
Q psy7829         359 SIAHILDLCYLNLH-RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS------TNHIDLIANETI  431 (511)
Q Consensus       359 ~~~~~~~~~~~~~~-~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~------~~~v~~i~~d~~  431 (511)
                      ...+++..  +.+. ++.+|||||||+|.++..+++.. . .+|+|+|+++++++.+.++..      ..++..+..+..
T Consensus        24 kL~~~L~~--~~~~~~g~~VLDiGcGtG~~t~~la~~g-~-~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~   99 (232)
T 3opn_A           24 KLEKALKE--FHLEINGKTCLDIGSSTGGFTDVMLQNG-A-KLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADF   99 (232)
T ss_dssp             HHHHHHHH--TTCCCTTCEEEEETCTTSHHHHHHHHTT-C-SEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGC
T ss_pred             HHHHHHHH--cCCCCCCCEEEEEccCCCHHHHHHHhcC-C-CEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHc
Confidence            34566665  4544 56799999999999999998773 2 599999999888777665433      123433332211


Q ss_pred             cc--c-cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         432 EI--I-PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       432 ~~--l-~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +.  . ...+|.++..             ...+...+.+.|+|+|.++.+
T Consensus       100 ~~~~~d~~~~D~v~~~-------------l~~~l~~i~rvLkpgG~lv~~  136 (232)
T 3opn_A          100 EQGRPSFTSIDVSFIS-------------LDLILPPLYEILEKNGEVAAL  136 (232)
T ss_dssp             CSCCCSEEEECCSSSC-------------GGGTHHHHHHHSCTTCEEEEE
T ss_pred             CcCCCCEEEEEEEhhh-------------HHHHHHHHHHhccCCCEEEEE
Confidence            11  0 1123333322             244567888889999988765

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.56  E-value=7.3e-08  Score=92.01  Aligned_cols=98  Identities=17%  Similarity=0.217  Sum_probs=70.0

Q ss_pred             CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----cccccccccccccc---cccchhhhhcc
Q psy7829         373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETIEII---PHILDLCYLNL  445 (511)
Q Consensus       373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~~l---~~~~d~i~~~l  445 (511)
                      ++.+|||||||+|.++..+++..   .+|+++|+++++++.+++++..    .+++++.+|..+..   +..+|.++...
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~  144 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAERG---HQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHA  144 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEES
T ss_pred             CCCEEEEeCCcchHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECc
Confidence            47899999999999999999873   7999999999999988877653    56778888765433   23455444321


Q ss_pred             cCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         446 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       446 ~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                           ++..-.....+...+.+.|+|+|.++..
T Consensus       145 -----~l~~~~~~~~~l~~~~~~LkpgG~l~~~  172 (285)
T 4htf_A          145 -----VLEWVADPRSVLQTLWSVLRPGGVLSLM  172 (285)
T ss_dssp             -----CGGGCSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred             -----hhhcccCHHHHHHHHHHHcCCCeEEEEE
Confidence                 0101123345667888899999998765

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.55  E-value=7.7e-08  Score=87.71  Aligned_cols=100  Identities=18%  Similarity=0.225  Sum_probs=70.2

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccc-cccchhhhhcccCC
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEII-PHILDLCYLNLHRG  448 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l-~~~~d~i~~~l~~~  448 (511)
                      .+.++.+|||+|||+|.++..+++..   .+|+++|+++++++.+++ .+..+++++.+|..+.. +..+|.++...   
T Consensus        43 ~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~-~~~~~~~~~~~d~~~~~~~~~~D~v~~~~---  115 (218)
T 3ou2_A           43 AGNIRGDVLELASGTGYWTRHLSGLA---DRVTALDGSAEMIAEAGR-HGLDNVEFRQQDLFDWTPDRQWDAVFFAH---  115 (218)
T ss_dssp             TTTSCSEEEEESCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHGG-GCCTTEEEEECCTTSCCCSSCEEEEEEES---
T ss_pred             cCCCCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHh-cCCCCeEEEecccccCCCCCceeEEEEec---
Confidence            36788899999999999999999883   799999999999999887 45577888888765542 23344433221   


Q ss_pred             cEEEEEcCC--ccHHHHHHHHHhCCCcEEEEh
Q psy7829         449 AKVLEIGSG--SGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       449 ~~vLD~~~g--~g~~~~~l~~~l~~~g~v~~~  478 (511)
                        ++.....  ...+...+.+.|+|+|.++..
T Consensus       116 --~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~  145 (218)
T 3ou2_A          116 --WLAHVPDDRFEAFWESVRSAVAPGGVVEFV  145 (218)
T ss_dssp             --CGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --hhhcCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence              0000000  134456777888999988766

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.55  E-value=1.9e-07  Score=86.89  Aligned_cols=73  Identities=18%  Similarity=0.370  Sum_probs=61.5

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-cccccccccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNHIDLIANETIEI  433 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~~  433 (511)
                      .+..+.+++..  +.+.++++|||||||+|.++..+++..   .+|+++|+++++++.+++++. .++++++++|..+.
T Consensus        15 d~~~~~~i~~~--~~~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~   88 (244)
T 1qam_A           15 SKHNIDKIMTN--IRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQF   88 (244)
T ss_dssp             CHHHHHHHHTT--CCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGC
T ss_pred             CHHHHHHHHHh--CCCCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhC
Confidence            45667777776  677889999999999999999999886   799999999999999888775 36788988887653

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.54  E-value=6.9e-08  Score=92.33  Aligned_cols=102  Identities=14%  Similarity=0.123  Sum_probs=75.1

Q ss_pred             CEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc---ccccccccccccccc----ccchhhhhcccC
Q psy7829         375 AKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST---NHIDLIANETIEIIP----HILDLCYLNLHR  447 (511)
Q Consensus       375 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~---~~v~~i~~d~~~~l~----~~~d~i~~~l~~  447 (511)
                      .+|||||||+|.++..+++.. |+.+|++||+++++++.+++++..   ++++++.+|+.+.+.    ..+|.++.+...
T Consensus        91 ~rVLdIG~G~G~la~~la~~~-p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~  169 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVY-PQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA  169 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHS-TTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred             CEEEEEECCcCHHHHHHHHHC-CCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence            399999999999999999877 668999999999999999998874   568899999776643    356766655433


Q ss_pred             CcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         448 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       448 ~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..... ..--+-.+...+.+.|+|+|.++..
T Consensus       170 ~~~~~-~~L~t~efl~~~~r~LkpgGvlv~~  199 (317)
T 3gjy_A          170 GAITP-QNFTTVEFFEHCHRGLAPGGLYVAN  199 (317)
T ss_dssp             TSCCC-GGGSBHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccc-hhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            22110 0001234567778889999988765

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.54  E-value=1.5e-07  Score=95.30  Aligned_cols=104  Identities=11%  Similarity=0.095  Sum_probs=71.9

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc--ccccccccccccccccchhhhhccc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN--HIDLIANETIEIIPHILDLCYLNLH  446 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~--~v~~i~~d~~~~l~~~~d~i~~~l~  446 (511)
                      +...++.+|||+|||+|..+..+++.. ++++|+++|+++.+++.+.+|+...  +++++.+|.....+.     +..-.
T Consensus       242 l~~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~-----~~~~~  315 (429)
T 1sqg_A          242 LAPQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQW-----CGEQQ  315 (429)
T ss_dssp             HCCCTTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHH-----HTTCC
T ss_pred             cCCCCcCeEEEECCCchHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhh-----cccCC
Confidence            677899999999999999999999987 4589999999987777766665422  356666665443210     00112


Q ss_pred             CCcEEEEEcC-CccH-------------------------HHHHHHHHhCCCcEEEEh
Q psy7829         447 RGAKVLEIGS-GSGY-------------------------LATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       447 ~~~~vLD~~~-g~g~-------------------------~~~~l~~~l~~~g~v~~~  478 (511)
                      .+..++|..| |.|.                         +...+.+.++|||.++-.
T Consensus       316 fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvys  373 (429)
T 1sqg_A          316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYA  373 (429)
T ss_dssp             EEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            2345667777 5663                         344566778999998753

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.54  E-value=1e-07  Score=90.66  Aligned_cols=105  Identities=16%  Similarity=0.078  Sum_probs=73.5

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc-------------cccccccccccccccc--c
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI-------------STNHIDLIANETIEII--P  435 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~-------------~~~~v~~i~~d~~~~l--~  435 (511)
                      ...+.+|||||||+|.++..+++.  +..+|+++|+++++++.+++++             ..++++++.+|+.+.+  +
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~--~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~  150 (281)
T 1mjf_A           73 HPKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNN  150 (281)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHC
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhccc
Confidence            456789999999999999999876  3479999999999999988877             2356888888876544  3


Q ss_pred             ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         436 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       436 ~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..+|.++.+........ -.--+-.+...+.+.|+|+|.++..
T Consensus       151 ~~fD~Ii~d~~~~~~~~-~~l~~~~~l~~~~~~L~pgG~lv~~  192 (281)
T 1mjf_A          151 RGFDVIIADSTDPVGPA-KVLFSEEFYRYVYDALNNPGIYVTQ  192 (281)
T ss_dssp             CCEEEEEEECCCCC------TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCeeEEEECCCCCCCcc-hhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            45666665443211000 0000234556778889999988764

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.53  E-value=4.4e-08  Score=91.27  Aligned_cols=99  Identities=18%  Similarity=0.186  Sum_probs=70.8

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccc-cccchhhhhcccCCc
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEII-PHILDLCYLNLHRGA  449 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l-~~~~d~i~~~l~~~~  449 (511)
                      ..++.+|||||||+|.++..+++..   .+|+++|+++++++.++++... +++++.+|..+.. +..+|.++...    
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~-~v~~~~~d~~~~~~~~~fD~v~~~~----  111 (250)
T 2p7i_A           40 FFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLKD-GITYIHSRFEDAQLPRRYDNIVLTH----  111 (250)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSCS-CEEEEESCGGGCCCSSCEEEEEEES----
T ss_pred             hcCCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhhC-CeEEEEccHHHcCcCCcccEEEEhh----
Confidence            4578899999999999999998764   5899999999999999888765 7888877765432 23345443321    


Q ss_pred             EEEEEcCCccHHHHHHH-HHhCCCcEEEEh
Q psy7829         450 KVLEIGSGSGYLATLMA-HLVGPTGHVTGL  478 (511)
Q Consensus       450 ~vLD~~~g~g~~~~~l~-~~l~~~g~v~~~  478 (511)
                       ++..-..+..+...+. +.|+|+|.++..
T Consensus       112 -~l~~~~~~~~~l~~~~~~~LkpgG~l~i~  140 (250)
T 2p7i_A          112 -VLEHIDDPVALLKRINDDWLAEGGRLFLV  140 (250)
T ss_dssp             -CGGGCSSHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             -HHHhhcCHHHHHHHHHHHhcCCCCEEEEE
Confidence             1111113345667788 888999988766

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.52  E-value=5.2e-08  Score=97.03  Aligned_cols=121  Identities=12%  Similarity=0.088  Sum_probs=78.9

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cc--ccccccccccccccc------cchh
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TN--HIDLIANETIEIIPH------ILDL  440 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~--~v~~i~~d~~~~l~~------~~d~  440 (511)
                      .++.+|||+|||+|.+++.+|+...  .+|+++|+++++++.+++|+.   ..  +++++++|..+.++.      .+|.
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga--~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~  288 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI  288 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccE
Confidence            6789999999999999999997531  589999999888888777765   33  678899987665432      4566


Q ss_pred             hhhcccCCc----EEEEEcCCccHHHHHHHHHhCCCcEEEEh--------HHHHHHHHHHHHhcCC
Q psy7829         441 CYLNLHRGA----KVLEIGSGSGYLATLMAHLVGPTGHVTGL--------EHMMDIAIESIANIST  494 (511)
Q Consensus       441 i~~~l~~~~----~vLD~~~g~g~~~~~l~~~l~~~g~v~~~--------~~ml~~a~~~~~~~~~  494 (511)
                      ++.+.+...    .+.+.......+...+.+.++|+|.++..        +...+..++.+...+.
T Consensus       289 Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~  354 (385)
T 2b78_A          289 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKH  354 (385)
T ss_dssp             EEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCC
T ss_pred             EEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCC
Confidence            655443311    00000000001223445778999988765        5555666666666554

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.52  E-value=1.7e-07  Score=87.03  Aligned_cols=96  Identities=17%  Similarity=0.134  Sum_probs=64.4

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccc----cccchhhhhcc
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEII----PHILDLCYLNL  445 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l----~~~~d~i~~~l  445 (511)
                      .++++.+|||||||+|.++..+++..   .+|+++|+++++++.+.++     ++++..|..+.+    +..+|.++...
T Consensus        38 ~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~-----~~~~~~d~~~~~~~~~~~~fD~i~~~~  109 (240)
T 3dli_A           38 YFKGCRRVLDIGCGRGEFLELCKEEG---IESIGVDINEDMIKFCEGK-----FNVVKSDAIEYLKSLPDKYLDGVMISH  109 (240)
T ss_dssp             GTTTCSCEEEETCTTTHHHHHHHHHT---CCEEEECSCHHHHHHHHTT-----SEEECSCHHHHHHTSCTTCBSEEEEES
T ss_pred             hhcCCCeEEEEeCCCCHHHHHHHhCC---CcEEEEECCHHHHHHHHhh-----cceeeccHHHHhhhcCCCCeeEEEECC
Confidence            45688999999999999999998873   6899999999999998877     555555543321    23344443321


Q ss_pred             cCCcEEEEEcC--CccHHHHHHHHHhCCCcEEEEh
Q psy7829         446 HRGAKVLEIGS--GSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       446 ~~~~~vLD~~~--g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                           ++..-.  ....+...+.+.|+|+|.++..
T Consensus       110 -----~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~  139 (240)
T 3dli_A          110 -----FVEHLDPERLFELLSLCYSKMKYSSYIVIE  139 (240)
T ss_dssp             -----CGGGSCGGGHHHHHHHHHHHBCTTCCEEEE
T ss_pred             -----chhhCCcHHHHHHHHHHHHHcCCCcEEEEE
Confidence                 000001  1134556777888888887655

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.51  E-value=1.3e-07  Score=88.12  Aligned_cols=73  Identities=19%  Similarity=0.343  Sum_probs=62.1

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEI  433 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~  433 (511)
                      .+..+.+++..  +.+.++++|||||||+|.++..+++..  ..+|+++|+++.++..+.++ ...+++++++|..+.
T Consensus        16 d~~i~~~iv~~--~~~~~~~~VLDiG~G~G~lt~~L~~~~--~~~v~avEid~~~~~~~~~~-~~~~v~~i~~D~~~~   88 (249)
T 3ftd_A           16 SEGVLKKIAEE--LNIEEGNTVVEVGGGTGNLTKVLLQHP--LKKLYVIELDREMVENLKSI-GDERLEVINEDASKF   88 (249)
T ss_dssp             CHHHHHHHHHH--TTCCTTCEEEEEESCHHHHHHHHTTSC--CSEEEEECCCHHHHHHHTTS-CCTTEEEECSCTTTC
T ss_pred             CHHHHHHHHHh--cCCCCcCEEEEEcCchHHHHHHHHHcC--CCeEEEEECCHHHHHHHHhc-cCCCeEEEEcchhhC
Confidence            35677778777  778899999999999999999998762  37999999999999999888 667899999987654

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.51  E-value=1.1e-07  Score=89.45  Aligned_cols=102  Identities=11%  Similarity=0.037  Sum_probs=67.7

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc--cccccccccccccccc--cccchhhhhc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI--STNHIDLIANETIEII--PHILDLCYLN  444 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~--~~~~v~~i~~d~~~~l--~~~~d~i~~~  444 (511)
                      ..+.++.+|||+|||+|..+..+++..   .+|+++|+++++++.++++.  ...++.++.+|..+..  +..+|.++..
T Consensus        35 ~~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~  111 (263)
T 2yqz_A           35 HPKGEEPVFLELGVGTGRIALPLIARG---YRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVV  111 (263)
T ss_dssp             CCSSSCCEEEEETCTTSTTHHHHHTTT---CEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEE
T ss_pred             cCCCCCCEEEEeCCcCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEEC
Confidence            366789999999999999999998763   79999999999999988875  2456777777654321  1233433321


Q ss_pred             ccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         445 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       445 l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..-.     .-.....+...+.+.|+|+|.++..
T Consensus       112 ~~l~-----~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          112 HLWH-----LVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             SCGG-----GCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             Cchh-----hcCCHHHHHHHHHHHCCCCcEEEEE
Confidence            1000     0002234456667777888876653

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.51  E-value=1.1e-07  Score=91.04  Aligned_cols=106  Identities=10%  Similarity=-0.012  Sum_probs=72.6

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-------cccccccccccccccc---ccchhh
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-------TNHIDLIANETIEIIP---HILDLC  441 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-------~~~v~~i~~d~~~~l~---~~~d~i  441 (511)
                      ..+.+|||||||+|..+..+++.. +..+|+++|+++++++.+++++.       .++++++.+|+.+.++   ..+|.+
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  167 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI  167 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEE
Confidence            456899999999999999998764 45899999999999998887763       3578888888765442   346666


Q ss_pred             hhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         442 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       442 ~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +.+....+.-....--+-.+...+.+.|+|+|.++..
T Consensus       168 i~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  204 (296)
T 1inl_A          168 IIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE  204 (296)
T ss_dssp             EEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            6543221000000001234556778889999988764

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.50  E-value=3.3e-07  Score=91.11  Aligned_cols=112  Identities=13%  Similarity=0.089  Sum_probs=74.9

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccc--ccccccccccc---ccchhhhhcc
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHID--LIANETIEIIP---HILDLCYLNL  445 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~--~i~~d~~~~l~---~~~d~i~~~l  445 (511)
                      .++|.+|||+|||+|.+++.+|+..   ..|+++|+++.+++.+++|+..+++.  +.++|..+.++   ..+|.++.  
T Consensus       212 ~~~g~~VLDlg~GtG~~sl~~a~~g---a~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~--  286 (393)
T 4dmg_A          212 VRPGERVLDVYSYVGGFALRAARKG---AYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLL--  286 (393)
T ss_dssp             CCTTCEEEEESCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEE--
T ss_pred             hcCCCeEEEcccchhHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEE--
Confidence            4569999999999999999999763   45999999999999988887655443  55666555432   12454443  


Q ss_pred             cCCcEEEEEcC-------------CccHHHHHHHHHhCCCcEEEEh--------HHHHHHHHHHHHhcCC
Q psy7829         446 HRGAKVLEIGS-------------GSGYLATLMAHLVGPTGHVTGL--------EHMMDIAIESIANIST  494 (511)
Q Consensus       446 ~~~~~vLD~~~-------------g~g~~~~~l~~~l~~~g~v~~~--------~~ml~~a~~~~~~~~~  494 (511)
                             |..|             +.-.+...+.+.|+|+|.++..        +.+.+..++.+...+.
T Consensus       287 -------dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~  349 (393)
T 4dmg_A          287 -------DPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGR  349 (393)
T ss_dssp             -------CCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTC
T ss_pred             -------CCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCC
Confidence                   3333             1113345556788999998744        4444555555555554

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.50  E-value=2.9e-07  Score=92.55  Aligned_cols=111  Identities=16%  Similarity=0.097  Sum_probs=74.9

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccc--ccccccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH--IDLIANETIEI  433 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~--v~~i~~d~~~~  433 (511)
                      ++.....+...+.. +.++.+|||+|||+|.+++.+|+..   .+|+++|+++++++.+++|...++  ++++.+|..+.
T Consensus       274 n~~~~e~l~~~~~~-~~~~~~VLDlgcG~G~~sl~la~~~---~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~  349 (425)
T 2jjq_A          274 NSYQAVNLVRKVSE-LVEGEKILDMYSGVGTFGIYLAKRG---FNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREV  349 (425)
T ss_dssp             BHHHHHHHHHHHHH-HCCSSEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTC
T ss_pred             CHHHHHHHHHHhhc-cCCCCEEEEeeccchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHc
Confidence            33444444444222 5788999999999999999999864   799999999999998888775433  77888887766


Q ss_pred             ccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         434 IPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       434 l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ++..+|.++.+.+.        .|...........++|+|.++..
T Consensus       350 ~~~~fD~Vv~dPPr--------~g~~~~~~~~l~~l~p~givyvs  386 (425)
T 2jjq_A          350 SVKGFDTVIVDPPR--------AGLHPRLVKRLNREKPGVIVYVS  386 (425)
T ss_dssp             CCTTCSEEEECCCT--------TCSCHHHHHHHHHHCCSEEEEEE
T ss_pred             CccCCCEEEEcCCc--------cchHHHHHHHHHhcCCCcEEEEE
Confidence            54445555443321        13333233333457898877655

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.49  E-value=2.1e-07  Score=89.38  Aligned_cols=89  Identities=15%  Similarity=0.197  Sum_probs=63.0

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---cccccccccccccccccccchhhhhcc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETIEIIPHILDLCYLNL  445 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~~~l~~~~d~i~~~l  445 (511)
                      +.+.+|++|||+|||+|..|+.+|+.+++.++|+++|+++++++.+++|+   +..|++++.+|..+.......    .-
T Consensus        98 l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~----~~  173 (309)
T 2b9e_A           98 LDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPR----YH  173 (309)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGG----GT
T ss_pred             hCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccc----cC
Confidence            57789999999999999999999998866799999999988877766654   566788888886554321100    01


Q ss_pred             cCCcEEEEEcC-CccHH
Q psy7829         446 HRGAKVLEIGS-GSGYL  461 (511)
Q Consensus       446 ~~~~~vLD~~~-g~g~~  461 (511)
                      ..+..++|..| |+|.+
T Consensus       174 ~fD~Vl~D~PcSg~G~~  190 (309)
T 2b9e_A          174 EVHYILLDPSCSGSGMP  190 (309)
T ss_dssp             TEEEEEECCCCCC----
T ss_pred             CCCEEEEcCCcCCCCCC
Confidence            22345677777 66654

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.49  E-value=5.5e-08  Score=91.22  Aligned_cols=72  Identities=15%  Similarity=0.138  Sum_probs=55.4

Q ss_pred             CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cc-ccccccccccc----ccc----ccchh
Q psy7829         373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TN-HIDLIANETIE----IIP----HILDL  440 (511)
Q Consensus       373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~-~v~~i~~d~~~----~l~----~~~d~  440 (511)
                      ++.+|||+|||+|.+++.+++.. +..+|+++|+++++++.+++++.   .. +++++++|..+    .++    ..+|.
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~  143 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF  143 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence            57899999999999999999876 44899999999999988887764   33 37888877433    232    35777


Q ss_pred             hhhcc
Q psy7829         441 CYLNL  445 (511)
Q Consensus       441 i~~~l  445 (511)
                      ++.+.
T Consensus       144 i~~np  148 (254)
T 2h00_A          144 CMCNP  148 (254)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            77763

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.49  E-value=1.9e-07  Score=88.34  Aligned_cols=104  Identities=12%  Similarity=0.174  Sum_probs=64.1

Q ss_pred             HHHHHHHhhcCCC-CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc------cccccccccccccc
Q psy7829         360 IAHILDLCYLNLH-RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI------STNHIDLIANETIE  432 (511)
Q Consensus       360 ~~~~~~~~~~~~~-~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~------~~~~v~~i~~d~~~  432 (511)
                      ...++..  +.+. ++.+|||||||||+++..+++.. . ++|+|+|++++|+..+.++.      +..|+..+..+.  
T Consensus        73 l~~~l~~--~~~~~~g~~vLDiGcGTG~~t~~L~~~g-a-~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~--  146 (291)
T 3hp7_A           73 LEKALAV--FNLSVEDMITIDIGASTGGFTDVMLQNG-A-KLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVD--  146 (291)
T ss_dssp             HHHHHHH--TTCCCTTCEEEEETCTTSHHHHHHHHTT-C-SEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGG--
T ss_pred             HHHHHHh--cCCCccccEEEecCCCccHHHHHHHhCC-C-CEEEEEECCHHHHHHHHHhCcccceecccCceecchhh--
Confidence            4455665  5554 57899999999999999998763 2 79999999988777644321      122333332211  


Q ss_pred             cccc-cchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         433 IIPH-ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       433 ~l~~-~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                       ++. .+|.+..+....        ....+...+++.|+|+|+++.+
T Consensus       147 -l~~~~fD~v~~d~sf~--------sl~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          147 -FTEGLPSFASIDVSFI--------SLNLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             -CTTCCCSEEEECCSSS--------CGGGTHHHHHHHSCTTCEEEEE
T ss_pred             -CCCCCCCEEEEEeeHh--------hHHHHHHHHHHHcCcCCEEEEE
Confidence             111 133332222111        2345567888889999988765

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.48  E-value=1.6e-07  Score=90.31  Aligned_cols=108  Identities=16%  Similarity=0.096  Sum_probs=74.8

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-------ccccccccccccccc---cccc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-------TNHIDLIANETIEII---PHIL  438 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-------~~~v~~i~~d~~~~l---~~~~  438 (511)
                      +....+.+|||||||+|.++..+++.. +..+|+++|+++++++.+++++.       .++++++.+|+.+.+   +..+
T Consensus        91 ~~~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~f  169 (304)
T 2o07_A           91 CSHPNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAF  169 (304)
T ss_dssp             TTSSSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCE
T ss_pred             hhCCCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCc
Confidence            344577899999999999999998764 55899999999999998887764       356888888876644   3456


Q ss_pred             hhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         439 DLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       439 d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      |.++.+....... ...--+-.+...+.+.|+|+|.++..
T Consensus       170 D~Ii~d~~~~~~~-~~~l~~~~~l~~~~~~LkpgG~lv~~  208 (304)
T 2o07_A          170 DVIITDSSDPMGP-AESLFKESYYQLMKTALKEDGVLCCQ  208 (304)
T ss_dssp             EEEEEECC------------CHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEECCCCCCCc-chhhhHHHHHHHHHhccCCCeEEEEe
Confidence            7766654321100 00001234566778899999988753

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.48  E-value=1.6e-07  Score=91.21  Aligned_cols=103  Identities=17%  Similarity=0.175  Sum_probs=75.4

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-------cccccccccccccccc----cc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-------TNHIDLIANETIEIIP----HI  437 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-------~~~v~~i~~d~~~~l~----~~  437 (511)
                      +....+.+|||||||+|.++..+++.. +..+|+++|+++++++.+++++.       .++++++.+|..+.++    ..
T Consensus       116 ~~~~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~  194 (334)
T 1xj5_A          116 CSIPNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGS  194 (334)
T ss_dssp             TTSSCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTC
T ss_pred             hhCCCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCC
Confidence            445677899999999999999999764 55899999999999998888764       3578899998766532    34


Q ss_pred             chhhhhcccCCcEEEEEcCC----ccHHHHHHHHHhCCCcEEEE
Q psy7829         438 LDLCYLNLHRGAKVLEIGSG----SGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       438 ~d~i~~~l~~~~~vLD~~~g----~g~~~~~l~~~l~~~g~v~~  477 (511)
                      +|.++.+.....     +..    +-.+...+.+.|+|+|.++.
T Consensus       195 fDlIi~d~~~p~-----~~~~~l~~~~~l~~~~~~LkpgG~lv~  233 (334)
T 1xj5_A          195 YDAVIVDSSDPI-----GPAKELFEKPFFQSVARALRPGGVVCT  233 (334)
T ss_dssp             EEEEEECCCCTT-----SGGGGGGSHHHHHHHHHHEEEEEEEEE
T ss_pred             ccEEEECCCCcc-----CcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence            666665432111     000    23456677888999999887

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.48  E-value=2.2e-07  Score=92.22  Aligned_cols=120  Identities=18%  Similarity=0.176  Sum_probs=80.9

Q ss_pred             CCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----cccccccc
Q psy7829         353 GPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIAN  428 (511)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~  428 (511)
                      .|..+..++.++.+  . ..++.+|||+|||+|.+++.+|+.. +.++|+|+|+++.+++.+++|+..    .+++++++
T Consensus       200 a~l~~~la~~l~~~--~-~~~~~~vLD~gCGsG~~~i~~a~~~-~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~  275 (373)
T 3tm4_A          200 AHLKASIANAMIEL--A-ELDGGSVLDPMCGSGTILIELALRR-YSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQG  275 (373)
T ss_dssp             TCCCHHHHHHHHHH--H-TCCSCCEEETTCTTCHHHHHHHHTT-CCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEEC
T ss_pred             CCccHHHHHHHHHh--h-cCCCCEEEEccCcCcHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEEC
Confidence            35567777777776  4 7889999999999999999999875 456999999999999988887653    46788888


Q ss_pred             ccccccc--ccchhhhhcccCCcEEEEEcCC---ccHHHHHHHHHhCCCcEEEEh
Q psy7829         429 ETIEIIP--HILDLCYLNLHRGAKVLEIGSG---SGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       429 d~~~~l~--~~~d~i~~~l~~~~~vLD~~~g---~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      |..+...  ..+|.++.+.+-+.++-+...-   -..+...+.+.+  +|.++.+
T Consensus       276 D~~~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i  328 (373)
T 3tm4_A          276 DATQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFI  328 (373)
T ss_dssp             CGGGGGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEE
T ss_pred             ChhhCCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEE
Confidence            8766432  4577777776655443211100   022344555666  4555444

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.48  E-value=1.3e-07  Score=89.52  Aligned_cols=119  Identities=11%  Similarity=0.087  Sum_probs=82.2

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-------ccccccccccccccc---cccchhh
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-------TNHIDLIANETIEII---PHILDLC  441 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-------~~~v~~i~~d~~~~l---~~~~d~i  441 (511)
                      ..+.+|||||||+|.++..+++.. +..+|+++|+++++++.+++++.       .++++++.+|+.+.+   +..+|.+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~I  152 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI  152 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEE
Confidence            467899999999999999998764 34799999999999999888762       357899999877654   3457777


Q ss_pred             hhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh-------HHHHHHHHHHHHhc
Q psy7829         442 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL-------EHMMDIAIESIANI  492 (511)
Q Consensus       442 ~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~-------~~ml~~a~~~~~~~  492 (511)
                      +.+....... .-.--+-.+...+.+.|+|+|.++..       ...+....+.+++.
T Consensus       153 i~d~~~~~~~-~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~  209 (275)
T 1iy9_A          153 MVDSTEPVGP-AVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI  209 (275)
T ss_dssp             EESCSSCCSC-CCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT
T ss_pred             EECCCCCCCc-chhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHh
Confidence            6654332100 00001245667888999999988764       33344444455443

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.47  E-value=9.3e-08  Score=88.56  Aligned_cols=103  Identities=14%  Similarity=0.073  Sum_probs=69.9

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc--cccccccccccccc----cccchhhhh
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST--NHIDLIANETIEII----PHILDLCYL  443 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~--~~v~~i~~d~~~~l----~~~~d~i~~  443 (511)
                      ...++.+|||||||+|..+..+++.. + .+|+++|+++++++.++++...  .+++++.+|..+..    +..+|.++.
T Consensus        57 ~~~~~~~vLDiGcGtG~~~~~l~~~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~  134 (236)
T 1zx0_A           57 ASSKGGRVLEVGFGMAIAASKVQEAP-I-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY  134 (236)
T ss_dssp             HTTTCEEEEEECCTTSHHHHHHHTSC-E-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred             cCCCCCeEEEEeccCCHHHHHHHhcC-C-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEE
Confidence            35678999999999999999997543 2 5899999999999998887653  56788888765432    234555544


Q ss_pred             cccCCcEEEEEcC-Ccc---HHHHHHHHHhCCCcEEEEh
Q psy7829         444 NLHRGAKVLEIGS-GSG---YLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       444 ~l~~~~~vLD~~~-g~g---~~~~~l~~~l~~~g~v~~~  478 (511)
                      +...    +.+.. ...   .+...+.+.|+|+|.++.+
T Consensus       135 d~~~----~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~  169 (236)
T 1zx0_A          135 DTYP----LSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             CCCC----CBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             CCcc----cchhhhhhhhHHHHHHHHHHhcCCCeEEEEE
Confidence            1000    00000 011   2356678899999998866

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.47  E-value=1.9e-07  Score=85.61  Aligned_cols=98  Identities=18%  Similarity=0.163  Sum_probs=68.2

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccccccc-----cc-ccchhhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEI-----IP-HILDLCY  442 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~-----l~-~~~d~i~  442 (511)
                      +...++.+|||+|||+|.++..+++..   .+|+++|+++.+++.++++   .++.++..+....     .+ ..+|.++
T Consensus        48 ~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~fD~v~  121 (227)
T 3e8s_A           48 ILGRQPERVLDLGCGEGWLLRALADRG---IEAVGVDGDRTLVDAARAA---GAGEVHLASYAQLAEAKVPVGKDYDLIC  121 (227)
T ss_dssp             HHHTCCSEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHT---CSSCEEECCHHHHHTTCSCCCCCEEEEE
T ss_pred             hhcCCCCEEEEeCCCCCHHHHHHHHCC---CEEEEEcCCHHHHHHHHHh---cccccchhhHHhhcccccccCCCccEEE
Confidence            444567999999999999999998763   7999999999999998887   4455555543332     11 2255444


Q ss_pred             hcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       443 ~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ....     +. ......+...+.+.|+|+|.++..
T Consensus       122 ~~~~-----l~-~~~~~~~l~~~~~~L~pgG~l~~~  151 (227)
T 3e8s_A          122 ANFA-----LL-HQDIIELLSAMRTLLVPGGALVIQ  151 (227)
T ss_dssp             EESC-----CC-SSCCHHHHHHHHHTEEEEEEEEEE
T ss_pred             ECch-----hh-hhhHHHHHHHHHHHhCCCeEEEEE
Confidence            3211     11 234456677888899999988765

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.46  E-value=2.3e-07  Score=86.42  Aligned_cols=73  Identities=18%  Similarity=0.230  Sum_probs=59.2

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-cccccccccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNHIDLIANETIEI  433 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~~  433 (511)
                      .+..+.+++..  +.+.++++|||||||+|.+|. ++ .. ...+|+++|++++++..+++++. .++++++++|..+.
T Consensus         6 d~~i~~~iv~~--~~~~~~~~VLEIG~G~G~lt~-l~-~~-~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~   79 (252)
T 1qyr_A            6 DQFVIDSIVSA--INPQKGQAMVEIGPGLAALTE-PV-GE-RLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTF   79 (252)
T ss_dssp             CHHHHHHHHHH--HCCCTTCCEEEECCTTTTTHH-HH-HT-TCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGC
T ss_pred             CHHHHHHHHHh--cCCCCcCEEEEECCCCcHHHH-hh-hC-CCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhC
Confidence            45677788887  678899999999999999999 65 33 22339999999999999988875 35799999987663

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.46  E-value=3.9e-07  Score=90.40  Aligned_cols=110  Identities=6%  Similarity=0.010  Sum_probs=73.7

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccccccc
Q psy7829         358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEII  434 (511)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~l  434 (511)
                      ..+..++........++.+|||+| |+|.+++.+++.. +.++|+++|+++++++.+++|+.   ..+++++.+|..+.+
T Consensus       157 ~~~~~~l~~~~~~~~~~~~VLDlG-G~G~~~~~la~~~-~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l  234 (373)
T 2qm3_A          157 TTVARVILMHTRGDLENKDIFVLG-DDDLTSIALMLSG-LPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPL  234 (373)
T ss_dssp             HHHHHHHHHHHTTCSTTCEEEEES-CTTCHHHHHHHHT-CCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCC
T ss_pred             HHHHHHHHHhhcCCCCCCEEEEEC-CCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhc
Confidence            334444433222334689999999 9999999998764 66899999999998888777754   447889999876644


Q ss_pred             c----ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEE
Q psy7829         435 P----HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHV  475 (511)
Q Consensus       435 ~----~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v  475 (511)
                      +    ..+|.++.+..-+..      +.-.+...+.+.++|+|++
T Consensus       235 ~~~~~~~fD~Vi~~~p~~~~------~~~~~l~~~~~~LkpgG~~  273 (373)
T 2qm3_A          235 PDYALHKFDTFITDPPETLE------AIRAFVGRGIATLKGPRCA  273 (373)
T ss_dssp             CTTTSSCBSEEEECCCSSHH------HHHHHHHHHHHTBCSTTCE
T ss_pred             hhhccCCccEEEECCCCchH------HHHHHHHHHHHHcccCCeE
Confidence            3    246665554322111      1123445667788999954

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.45  E-value=2.1e-07  Score=90.10  Aligned_cols=115  Identities=10%  Similarity=0.143  Sum_probs=79.9

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc-------cccccccccccccc---cccchh
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST-------NHIDLIANETIEII---PHILDL  440 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~-------~~v~~i~~d~~~~l---~~~~d~  440 (511)
                      ...+.+|||||||+|..+..+++.. +..+|+++|+++++++.+++++..       ++++++.+|..+.+   +..+|.
T Consensus       114 ~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDv  192 (321)
T 2pt6_A          114 SKEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDV  192 (321)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEE
T ss_pred             CCCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceE
Confidence            3567899999999999999998764 458999999999999998887653       56888888876544   345666


Q ss_pred             hhhcccCCcEEEEEcCC----ccHHHHHHHHHhCCCcEEEEh-------HHHHHHHHHHHHh
Q psy7829         441 CYLNLHRGAKVLEIGSG----SGYLATLMAHLVGPTGHVTGL-------EHMMDIAIESIAN  491 (511)
Q Consensus       441 i~~~l~~~~~vLD~~~g----~g~~~~~l~~~l~~~g~v~~~-------~~ml~~a~~~~~~  491 (511)
                      ++.+.....     +..    +-.+...+.+.|+|+|.++..       ...+....+.+++
T Consensus       193 Ii~d~~~p~-----~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~  249 (321)
T 2pt6_A          193 IIVDSSDPI-----GPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKK  249 (321)
T ss_dssp             EEEECCCSS-----SGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHT
T ss_pred             EEECCcCCC-----CcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHH
Confidence            665432110     100    134556777889999998763       2344444445444

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.45  E-value=6.4e-08  Score=91.21  Aligned_cols=103  Identities=17%  Similarity=0.123  Sum_probs=67.2

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccc-cccchhhhhcccCC
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEII-PHILDLCYLNLHRG  448 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l-~~~~d~i~~~l~~~  448 (511)
                      ..+++.+|||+|||+|.++..+++..   .+|+++|+++++++.++++..  +++++.+|..+.. +..+|.++.....-
T Consensus        47 ~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~--~~~~~~~d~~~~~~~~~fD~v~~~~~~l  121 (263)
T 3pfg_A           47 HSPKAASLLDVACGTGMHLRHLADSF---GTVEGLELSADMLAIARRRNP--DAVLHHGDMRDFSLGRRFSAVTCMFSSI  121 (263)
T ss_dssp             HCTTCCEEEEETCTTSHHHHHHTTTS---SEEEEEESCHHHHHHHHHHCT--TSEEEECCTTTCCCSCCEEEEEECTTGG
T ss_pred             hCCCCCcEEEeCCcCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCC--CCEEEECChHHCCccCCcCEEEEcCchh
Confidence            34677999999999999999998764   689999999999999888765  6788877754422 23344332211000


Q ss_pred             cEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         449 AKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       449 ~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..+.+ ......+...+.+.|+|+|.++..
T Consensus       122 ~~~~~-~~~~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          122 GHLAG-QAELDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             GGSCH-HHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             hhcCC-HHHHHHHHHHHHHhcCCCcEEEEE
Confidence            00000 000112355677888999998774

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.45  E-value=5.2e-07  Score=84.88  Aligned_cols=102  Identities=14%  Similarity=0.165  Sum_probs=78.5

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhC----CCceEEEEeCCHH--------------------------HHHHHHHHHhcc
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVG----PTGKVIGVEHIPE--------------------------LIEASLRNISKG  181 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~----~~~~v~~iD~~~~--------------------------~~~~a~~~~~~~  181 (511)
                      ....+|||+|+..|+.++.++..+.    ++.+|+++|..+.                          .++.+++++++.
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            3466899999999999999987653    3688999996421                          467789999987


Q ss_pred             CCCcCCCCCeEEEEccCCCCCC--CCCCccEEEecCCCC----chHHHHHhhcccCcEEEE
Q psy7829         182 NKDLLDSGRVRIVEADAREGYL--PEAPYDVIYYGGCVS----EVPSRVLNQLKKGGRILA  236 (511)
Q Consensus       182 ~~~~~~~~~v~~~~~d~~~~~~--~~~~fD~I~~~~~~~----~~~~~~~~~LkpgG~l~~  236 (511)
                      |   +..++|+++.+|+.+..+  +.++||+|+++....    ..++.+...|+|||.+++
T Consensus       185 g---l~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv~  242 (282)
T 2wk1_A          185 D---LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVIV  242 (282)
T ss_dssp             T---CCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             C---CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEEEE
Confidence            6   123789999999875332  236899999998752    124678899999999987

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.44  E-value=1.7e-07  Score=90.17  Aligned_cols=112  Identities=13%  Similarity=0.098  Sum_probs=74.7

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc------ccccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST------NHIDLIANE  429 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~------~~v~~i~~d  429 (511)
                      .......++..  +... +.+|||||||+|.++..+++..   .+|+++|+++.+++.++++...      .+++++++|
T Consensus        68 ~~~~~~~~~~~--~~~~-~~~vLDlGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d  141 (299)
T 3g2m_A           68 GTSEAREFATR--TGPV-SGPVLELAAGMGRLTFPFLDLG---WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGD  141 (299)
T ss_dssp             CHHHHHHHHHH--HCCC-CSCEEEETCTTTTTHHHHHTTT---CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECB
T ss_pred             ccHHHHHHHHh--hCCC-CCcEEEEeccCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCc
Confidence            45666666665  4443 4499999999999999998763   7899999999999998887764      568888887


Q ss_pred             ccccc-cccchhhhhcccCCcEEEEEcCC---ccHHHHHHHHHhCCCcEEEEh
Q psy7829         430 TIEII-PHILDLCYLNLHRGAKVLEIGSG---SGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       430 ~~~~l-~~~~d~i~~~l~~~~~vLD~~~g---~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..+.. +..+|.++....    ++.. ..   ...+...+.+.|+|+|.++..
T Consensus       142 ~~~~~~~~~fD~v~~~~~----~~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~  189 (299)
T 3g2m_A          142 MSAFALDKRFGTVVISSG----SINE-LDEADRRGLYASVREHLEPGGKFLLS  189 (299)
T ss_dssp             TTBCCCSCCEEEEEECHH----HHTT-SCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhcCCcCCCcCEEEECCc----cccc-CCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            65432 233443221000    0000 01   134456778889999998766

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.44  E-value=3.4e-07  Score=82.36  Aligned_cols=87  Identities=23%  Similarity=0.246  Sum_probs=65.4

Q ss_pred             CCHHHHHHHHHHhh-cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccccccc
Q psy7829         355 SSERSIAHILDLCY-LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEI  433 (511)
Q Consensus       355 ~~~~~~~~~~~~~~-~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~  433 (511)
                      .++.....++..+. ....++.+|||+|||+|.++..+++. + ..+|+++|+++++++.++++..  +++++++|..+ 
T Consensus        32 ~~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~--~~~~~~~d~~~-  106 (200)
T 1ne2_A           32 TDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL-G-AESVTAFDIDPDAIETAKRNCG--GVNFMVADVSE-  106 (200)
T ss_dssp             CCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT-T-BSEEEEEESCHHHHHHHHHHCT--TSEEEECCGGG-
T ss_pred             CCHHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHhcC--CCEEEECcHHH-
Confidence            34555555555422 23557899999999999999999876 2 2589999999999999998886  78888888766 


Q ss_pred             ccccchhhhhccc
Q psy7829         434 IPHILDLCYLNLH  446 (511)
Q Consensus       434 l~~~~d~i~~~l~  446 (511)
                      ++..+|.++.+..
T Consensus       107 ~~~~~D~v~~~~p  119 (200)
T 1ne2_A          107 ISGKYDTWIMNPP  119 (200)
T ss_dssp             CCCCEEEEEECCC
T ss_pred             CCCCeeEEEECCC
Confidence            3456777766543

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.44  E-value=1.9e-07  Score=89.96  Aligned_cols=106  Identities=14%  Similarity=0.080  Sum_probs=73.5

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-------ccccccccccccccc---cccchh
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-------TNHIDLIANETIEII---PHILDL  440 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-------~~~v~~i~~d~~~~l---~~~~d~  440 (511)
                      ...+.+|||||||+|..+..+++.. +..+|+++|+++++++.+++++.       .++++++.+|+.+.+   +..+|.
T Consensus       106 ~~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  184 (314)
T 2b2c_A          106 HPDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDV  184 (314)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceE
Confidence            3567899999999999999998764 55899999999999999888774       356888888876654   345777


Q ss_pred             hhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         441 CYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       441 i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ++.+..... ..+-.--+-.+...+.+.|+|+|.++..
T Consensus       185 Ii~d~~~~~-~~~~~l~t~~~l~~~~~~LkpgG~lv~~  221 (314)
T 2b2c_A          185 IITDSSDPV-GPAESLFGQSYYELLRDALKEDGILSSQ  221 (314)
T ss_dssp             EEECCC--------------HHHHHHHHEEEEEEEEEE
T ss_pred             EEEcCCCCC-CcchhhhHHHHHHHHHhhcCCCeEEEEE
Confidence            766543210 0000000134556778889999998863

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.44  E-value=7.5e-08  Score=92.94  Aligned_cols=105  Identities=13%  Similarity=0.036  Sum_probs=71.9

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----cccccccccccccc-cccchhhhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETIEII-PHILDLCYL  443 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~~l-~~~~d~i~~  443 (511)
                      ..+.++.+|||||||+|..+..+|....+..+|+++|+++.+++.++++...    ++++++.+|..+.. +..+|.++.
T Consensus       114 ~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~  193 (305)
T 3ocj_A          114 RHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTS  193 (305)
T ss_dssp             HHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEEC
T ss_pred             hhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEE
Confidence            4678899999999999999999864344678999999999999988887763    34778888765532 234444433


Q ss_pred             cccCCcEEEEEcCCccH---HHHHHHHHhCCCcEEEEh
Q psy7829         444 NLHRGAKVLEIGSGSGY---LATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       444 ~l~~~~~vLD~~~g~g~---~~~~l~~~l~~~g~v~~~  478 (511)
                      +..-.     .-.....   +...+.+.|+|||.++..
T Consensus       194 ~~~~~-----~~~~~~~~~~~l~~~~~~LkpgG~l~i~  226 (305)
T 3ocj_A          194 NGLNI-----YEPDDARVTELYRRFWQALKPGGALVTS  226 (305)
T ss_dssp             CSSGG-----GCCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CChhh-----hcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            21000     0001222   356778889999998843

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.44  E-value=5.7e-07  Score=85.57  Aligned_cols=104  Identities=11%  Similarity=0.156  Sum_probs=74.4

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-------ccccccccccccccc---cccc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-------TNHIDLIANETIEII---PHIL  438 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-------~~~v~~i~~d~~~~l---~~~~  438 (511)
                      +...++.+|||||||+|..+..+++.. +..+|+++|+++++++.+++++.       .++++++.+|..+.+   +..+
T Consensus        74 ~~~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~f  152 (283)
T 2i7c_A           74 TVSKEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTY  152 (283)
T ss_dssp             TTSSSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCE
T ss_pred             hcCCCCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCc
Confidence            344577899999999999999998764 55899999999999999888775       356888888876544   2345


Q ss_pred             hhhhhcccCCcEEEEEcCC----ccHHHHHHHHHhCCCcEEEEh
Q psy7829         439 DLCYLNLHRGAKVLEIGSG----SGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       439 d~i~~~l~~~~~vLD~~~g----~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      |.++.+.....     +..    +-.+...+.+.|+|+|.++..
T Consensus       153 D~Ii~d~~~~~-----~~~~~l~~~~~l~~~~~~L~pgG~lv~~  191 (283)
T 2i7c_A          153 DVIIVDSSDPI-----GPAETLFNQNFYEKIYNALKPNGYCVAQ  191 (283)
T ss_dssp             EEEEEECCCTT-----TGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEcCCCCC-----CcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            65554332110     101    124566778889999998754

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.44  E-value=4.9e-07  Score=85.75  Aligned_cols=90  Identities=18%  Similarity=0.221  Sum_probs=71.9

Q ss_pred             hHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829         117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA  196 (511)
Q Consensus       117 p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  196 (511)
                      |.+...+++.|.  +++|..++|..||.|..+..+++.+++.++|+|+|.++.+++.++ ++        ..++++++++
T Consensus        43 pVLl~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--------~~~Rv~lv~~  111 (347)
T 3tka_A           43 TVLLDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--------DDPRFSIIHG  111 (347)
T ss_dssp             CTTTHHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--------CCTTEEEEES
T ss_pred             cccHHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--------cCCcEEEEeC
Confidence            336677788886  789999999999999999999999888999999999999999884 33        2358999999


Q ss_pred             cCCCCC---CC---CCCccEEEecCCC
Q psy7829         197 DAREGY---LP---EAPYDVIYYGGCV  217 (511)
Q Consensus       197 d~~~~~---~~---~~~fD~I~~~~~~  217 (511)
                      ++.+..   ..   .+++|.|+.+..+
T Consensus       112 nF~~l~~~L~~~g~~~~vDgILfDLGV  138 (347)
T 3tka_A          112 PFSALGEYVAERDLIGKIDGILLDLGV  138 (347)
T ss_dssp             CGGGHHHHHHHTTCTTCEEEEEEECSC
T ss_pred             CHHHHHHHHHhcCCCCcccEEEECCcc
Confidence            876421   11   1369999988655

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.43  E-value=1.5e-07  Score=84.38  Aligned_cols=104  Identities=15%  Similarity=0.099  Sum_probs=67.9

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccccccc-cccchhhhhc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEII-PHILDLCYLN  444 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~l-~~~~d~i~~~  444 (511)
                      +...++.+|||+|||+|..+..+++. +  .+|+++|+++.+++.++++..   .++++++.+|..... +..+|.++..
T Consensus        28 ~~~~~~~~vLdiG~G~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~  104 (199)
T 2xvm_A           28 VKVVKPGKTLDLGCGNGRNSLYLAAN-G--YDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILST  104 (199)
T ss_dssp             TTTSCSCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEEEEEEE
T ss_pred             hhccCCCeEEEEcCCCCHHHHHHHHC-C--CeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCceEEEEc
Confidence            45567889999999999999999876 3  799999999988888777654   346777777654321 2334443322


Q ss_pred             ccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         445 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       445 l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..-..  ++ .-....+...+.+.++|+|.++.+
T Consensus       105 ~~l~~--~~-~~~~~~~l~~~~~~L~~gG~l~~~  135 (199)
T 2xvm_A          105 VVLMF--LE-AKTIPGLIANMQRCTKPGGYNLIV  135 (199)
T ss_dssp             SCGGG--SC-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             chhhh--CC-HHHHHHHHHHHHHhcCCCeEEEEE
Confidence            10000  00 001233456677888999987654

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.43  E-value=1.3e-07  Score=88.67  Aligned_cols=95  Identities=12%  Similarity=-0.025  Sum_probs=72.6

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-------ccccccccccccccccccchhhh
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-------TNHIDLIANETIEIIPHILDLCY  442 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-------~~~v~~i~~d~~~~l~~~~d~i~  442 (511)
                      ....+.+|||||||+|+++..+++. +  .+|+++|+++++++.+++++.       .++++++.+|+.+.+ ..+|.++
T Consensus        69 ~~~~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-~~fD~Ii  144 (262)
T 2cmg_A           69 TKKELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-KKYDLIF  144 (262)
T ss_dssp             TSSCCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-CCEEEEE
T ss_pred             cCCCCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-hhCCEEE
Confidence            3346789999999999999998876 3  899999999999998887764       346888888887766 5567666


Q ss_pred             hcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       443 ~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .+..          .+-.+...+.+.|+|+|.++..
T Consensus       145 ~d~~----------dp~~~~~~~~~~L~pgG~lv~~  170 (262)
T 2cmg_A          145 CLQE----------PDIHRIDGLKRMLKEDGVFISV  170 (262)
T ss_dssp             ESSC----------CCHHHHHHHHTTEEEEEEEEEE
T ss_pred             ECCC----------ChHHHHHHHHHhcCCCcEEEEE
Confidence            5432          1222567788889999988764

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.43  E-value=4.3e-07  Score=82.11  Aligned_cols=131  Identities=15%  Similarity=0.098  Sum_probs=81.6

Q ss_pred             CCHHHHHHHHHHhh-cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc--cccccccccc
Q psy7829         355 SSERSIAHILDLCY-LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN--HIDLIANETI  431 (511)
Q Consensus       355 ~~~~~~~~~~~~~~-~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~--~v~~i~~d~~  431 (511)
                      ..+.....++..+. ....++.+|||+|||+|.++..+++.. . .+|+++|+++.+++.++++....  +++++.+|..
T Consensus        30 ~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~-~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~  107 (207)
T 1wy7_A           30 TPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLG-A-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVS  107 (207)
T ss_dssp             CCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTT-C-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGG
T ss_pred             CchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcC-C-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchH
Confidence            34555555554421 235578999999999999999998763 2 58999999999999888877643  5788888876


Q ss_pred             ccccccchhhhhcccCCcEEEEEcCCc-cHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCC
Q psy7829         432 EIIPHILDLCYLNLHRGAKVLEIGSGS-GYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIST  494 (511)
Q Consensus       432 ~~l~~~~d~i~~~l~~~~~vLD~~~g~-g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~  494 (511)
                      + ++..+|.++.+.+-+..    ..+. -.+...+.+.+  ++-++..   +...+...+.+.+.|.
T Consensus       108 ~-~~~~~D~v~~~~p~~~~----~~~~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~  167 (207)
T 1wy7_A          108 E-FNSRVDIVIMNPPFGSQ----RKHADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGF  167 (207)
T ss_dssp             G-CCCCCSEEEECCCCSSS----STTTTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTE
T ss_pred             H-cCCCCCEEEEcCCCccc----cCCchHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCC
Confidence            6 34456666655432110    0011 12334444554  3332222   4555666666666664

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.43  E-value=4.7e-07  Score=83.63  Aligned_cols=108  Identities=21%  Similarity=0.278  Sum_probs=70.7

Q ss_pred             HHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----ccccccccccccccc-c
Q psy7829         362 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETIEIIP-H  436 (511)
Q Consensus       362 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~~l~-~  436 (511)
                      .++..  ..+++ .+|||+|||+|..+..+++.   ..+|+++|+++.+++.++++...    .+++++.+|..+..+ .
T Consensus        58 ~~~~~--~~~~~-~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  131 (235)
T 3lcc_A           58 HLVDT--SSLPL-GRALVPGCGGGHDVVAMASP---ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTE  131 (235)
T ss_dssp             HHHHT--TCSCC-EEEEEETCTTCHHHHHHCBT---TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSS
T ss_pred             HHHHh--cCCCC-CCEEEeCCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCC
Confidence            44443  34444 59999999999999998753   38999999999999988887753    458888887655332 2


Q ss_pred             cchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         437 ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       437 ~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .+|.++....-..  ++ ......+...+.+.|+|+|.++.+
T Consensus       132 ~fD~v~~~~~l~~--~~-~~~~~~~l~~~~~~LkpgG~l~~~  170 (235)
T 3lcc_A          132 LFDLIFDYVFFCA--IE-PEMRPAWAKSMYELLKPDGELITL  170 (235)
T ss_dssp             CEEEEEEESSTTT--SC-GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CeeEEEEChhhhc--CC-HHHHHHHHHHHHHHCCCCcEEEEE
Confidence            3444332110000  00 001234556778889999998864

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.43  E-value=3.3e-08  Score=97.08  Aligned_cols=116  Identities=18%  Similarity=0.185  Sum_probs=76.7

Q ss_pred             HHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccc--cccccccccccccc
Q psy7829         359 SIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH--IDLIANETIEIIPH  436 (511)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~--v~~i~~d~~~~l~~  436 (511)
                      ....++..  +...++.+|||+|||+|.++..+++.. |..+|+++|+++.+++.+++++...+  ++++.+|..+..+.
T Consensus       184 ~~~~ll~~--l~~~~~~~VLDlGcG~G~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~  260 (343)
T 2pjd_A          184 GSQLLLST--LTPHTKGKVLDVGCGAGVLSVAFARHS-PKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKG  260 (343)
T ss_dssp             HHHHHHHH--SCTTCCSBCCBTTCTTSHHHHHHHHHC-TTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCS
T ss_pred             HHHHHHHh--cCcCCCCeEEEecCccCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccC
Confidence            34455555  555567899999999999999999886 66799999999999998888775433  44566666554455


Q ss_pred             cchhhhhcccCCcEEEEEc-CCccHHHHHHHHHhCCCcEEEEh
Q psy7829         437 ILDLCYLNLHRGAKVLEIG-SGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       437 ~~d~i~~~l~~~~~vLD~~-~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .+|.++.+..-..-.. .. ...-.+...+.+.|+|+|.++.+
T Consensus       261 ~fD~Iv~~~~~~~g~~-~~~~~~~~~l~~~~~~LkpgG~l~i~  302 (343)
T 2pjd_A          261 RFDMIISNPPFHDGMQ-TSLDAAQTLIRGAVRHLNSGGELRIV  302 (343)
T ss_dssp             CEEEEEECCCCCSSSH-HHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CeeEEEECCCcccCcc-CCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            5666555432110000 00 00122345566788999998876

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.42  E-value=2.4e-07  Score=83.43  Aligned_cols=98  Identities=15%  Similarity=0.079  Sum_probs=65.7

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc--cccccccccccccc--cccchhhhhccc
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST--NHIDLIANETIEII--PHILDLCYLNLH  446 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~--~~v~~i~~d~~~~l--~~~~d~i~~~l~  446 (511)
                      ++++ +|||+|||+|.++..+++..   .+|+++|+++.+++.++++...  .++.++.+|..+..  +..+|.++....
T Consensus        28 ~~~~-~vLdiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  103 (202)
T 2kw5_A           28 IPQG-KILCLAEGEGRNACFLASLG---YEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFC  103 (202)
T ss_dssp             SCSS-EEEECCCSCTHHHHHHHTTT---CEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEECC
T ss_pred             CCCC-CEEEECCCCCHhHHHHHhCC---CeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEhh
Confidence            3566 99999999999999998753   7999999999999888777642  26777777654431  233454443210


Q ss_pred             CCcEEEEEc-CCccHHHHHHHHHhCCCcEEEEh
Q psy7829         447 RGAKVLEIG-SGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       447 ~~~~vLD~~-~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                            .+. .....+...+.+.++|+|.++..
T Consensus       104 ------~~~~~~~~~~l~~~~~~L~pgG~l~~~  130 (202)
T 2kw5_A          104 ------HLPSSLRQQLYPKVYQGLKPGGVFILE  130 (202)
T ss_dssp             ------CCCHHHHHHHHHHHHTTCCSSEEEEEE
T ss_pred             ------cCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence                  000 01223455667788999998776

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.41  E-value=7.7e-07  Score=80.13  Aligned_cols=96  Identities=15%  Similarity=0.120  Sum_probs=67.9

Q ss_pred             CCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccc--cccchhhhhcccCCcEE
Q psy7829         374 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEII--PHILDLCYLNLHRGAKV  451 (511)
Q Consensus       374 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l--~~~~d~i~~~l~~~~~v  451 (511)
                      +.+|||+|||+|.++..+++..   .+|+++|+++++++.++++.  ++++++.+|..+..  +..+|.++....-..  
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~--  114 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLG---HQIEGLEPATRLVELARQTH--PSVTFHHGTITDLSDSPKRWAGLLAWYSLIH--  114 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTT---CCEEEECCCHHHHHHHHHHC--TTSEEECCCGGGGGGSCCCEEEEEEESSSTT--
T ss_pred             CCeEEEecCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhC--CCCeEEeCcccccccCCCCeEEEEehhhHhc--
Confidence            8899999999999999998763   69999999999999988874  46888877754421  234454443211000  


Q ss_pred             EEEc-CCccHHHHHHHHHhCCCcEEEEh
Q psy7829         452 LEIG-SGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       452 LD~~-~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                        +. -....+...+.+.|+|+|.++..
T Consensus       115 --~~~~~~~~~l~~~~~~L~pgG~l~i~  140 (203)
T 3h2b_A          115 --MGPGELPDALVALRMAVEDGGGLLMS  140 (203)
T ss_dssp             --CCTTTHHHHHHHHHHTEEEEEEEEEE
T ss_pred             --CCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence              00 13345667788889999998764

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.40  E-value=2.5e-07  Score=86.54  Aligned_cols=109  Identities=14%  Similarity=0.118  Sum_probs=72.4

Q ss_pred             HHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc-cccccccccccccc--cccc
Q psy7829         362 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST-NHIDLIANETIEII--PHIL  438 (511)
Q Consensus       362 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~-~~v~~i~~d~~~~l--~~~~  438 (511)
                      .++..  +...++.+|||||||+|.++..+++...  .+|+++|+++.+++.++++... .+++++.+|.....  +..+
T Consensus        84 ~~l~~--l~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f  159 (254)
T 1xtp_A           84 NFIAS--LPGHGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY  159 (254)
T ss_dssp             HHHHT--STTCCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred             HHHHh--hcccCCCEEEEECCCcCHHHHHHHHhhc--CEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCe
Confidence            44443  5566889999999999999999998762  7899999999999998887753 56777777654321  1234


Q ss_pred             hhhhhcccCCcEEEEEc-CCccHHHHHHHHHhCCCcEEEEh
Q psy7829         439 DLCYLNLHRGAKVLEIG-SGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       439 d~i~~~l~~~~~vLD~~-~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      |.++....-..    +. -....+...+.+.|+|+|.++..
T Consensus       160 D~v~~~~~l~~----~~~~~~~~~l~~~~~~LkpgG~l~i~  196 (254)
T 1xtp_A          160 DLIVIQWTAIY----LTDADFVKFFKHCQQALTPNGYIFFK  196 (254)
T ss_dssp             EEEEEESCGGG----SCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEcchhhh----CCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            43332110000    00 00223456677889999988765

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.40  E-value=1.5e-07  Score=89.91  Aligned_cols=101  Identities=15%  Similarity=0.036  Sum_probs=67.2

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc--ccccccccccccc-cccchhhhhcccCC
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN--HIDLIANETIEII-PHILDLCYLNLHRG  448 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~--~v~~i~~d~~~~l-~~~~d~i~~~l~~~  448 (511)
                      .++.+|||+|||+|.++..+++..   .+|+++|+++.+++.++++....  +++++.+|..... +..+|.++....-.
T Consensus       119 ~~~~~vLD~GcG~G~~~~~l~~~g---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~i~~~~~~~  195 (286)
T 3m70_A          119 ISPCKVLDLGCGQGRNSLYLSLLG---YDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDFIVSTVVFM  195 (286)
T ss_dssp             SCSCEEEEESCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEEEEECSSGG
T ss_pred             cCCCcEEEECCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccEEEEccchh
Confidence            478999999999999999999873   79999999999988877766533  6777777754432 33444443321100


Q ss_pred             cEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         449 AKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       449 ~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .  ++ ......+...+.+.|+|+|.++.+
T Consensus       196 ~--~~-~~~~~~~l~~~~~~LkpgG~l~i~  222 (286)
T 3m70_A          196 F--LN-RERVPSIIKNMKEHTNVGGYNLIV  222 (286)
T ss_dssp             G--SC-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             h--CC-HHHHHHHHHHHHHhcCCCcEEEEE
Confidence            0  00 000113556677888999986654

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.40  E-value=2.2e-07  Score=84.34  Aligned_cols=98  Identities=20%  Similarity=0.201  Sum_probs=65.4

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccccccc-ccccchhhhhcccCC
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEI-IPHILDLCYLNLHRG  448 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~-l~~~~d~i~~~l~~~  448 (511)
                      .++++.+|||+|||+|.++..+++..   .+|+++|+++++++.++++.   ++.++.++.... .+..+|.++...   
T Consensus        40 ~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~---~~~~~~~d~~~~~~~~~fD~v~~~~---  110 (211)
T 3e23_A           40 ELPAGAKILELGCGAGYQAEAMLAAG---FDVDATDGSPELAAEASRRL---GRPVRTMLFHQLDAIDAYDAVWAHA---  110 (211)
T ss_dssp             TSCTTCEEEESSCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHH---TSCCEECCGGGCCCCSCEEEEEECS---
T ss_pred             hcCCCCcEEEECCCCCHHHHHHHHcC---CeEEEECCCHHHHHHHHHhc---CCceEEeeeccCCCCCcEEEEEecC---
Confidence            45678999999999999999998763   79999999999999988876   455555553322 122344333211   


Q ss_pred             cEEEEEcC--CccHHHHHHHHHhCCCcEEEEh
Q psy7829         449 AKVLEIGS--GSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       449 ~~vLD~~~--g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                        ++....  ..-.+...+.+.|+|+|.++..
T Consensus       111 --~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~  140 (211)
T 3e23_A          111 --CLLHVPRDELADVLKLIWRALKPGGLFYAS  140 (211)
T ss_dssp             --CGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --chhhcCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence              000000  1123456778889999988765

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.40  E-value=2.2e-07  Score=88.79  Aligned_cols=72  Identities=11%  Similarity=0.215  Sum_probs=59.3

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc--cccccccccccc
Q psy7829         358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST--NHIDLIANETIE  432 (511)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~--~~v~~i~~d~~~  432 (511)
                      ..+..++..  +.+.++.+|||+|||+|..+..+++.+ ++++|+++|+++++++.+++++..  .+++++++|...
T Consensus        13 vLl~e~l~~--L~~~~g~~vLD~g~G~G~~s~~la~~~-~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~   86 (301)
T 1m6y_A           13 VMVREVIEF--LKPEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYRE   86 (301)
T ss_dssp             TTHHHHHHH--HCCCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGG
T ss_pred             HHHHHHHHh--cCCCCCCEEEEEeCCcCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHH
Confidence            345566666  677899999999999999999999987 468999999999999998887764  578888887543

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.40  E-value=3.3e-07  Score=84.05  Aligned_cols=103  Identities=13%  Similarity=0.172  Sum_probs=68.3

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc--cccccccccccccc--cccchhhhhcc
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST--NHIDLIANETIEII--PHILDLCYLNL  445 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~--~~v~~i~~d~~~~l--~~~~d~i~~~l  445 (511)
                      .+.++.+|||+|||+|..+..+++..   .+|+++|+++++++.++++...  .+++++.+|..+..  +..+|.++.+.
T Consensus        35 ~~~~~~~vLDlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  111 (227)
T 1ve3_A           35 YMKKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFID  111 (227)
T ss_dssp             SCCSCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEES
T ss_pred             hcCCCCeEEEEeccCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcC
Confidence            44568999999999999999998775   4999999999999888776542  56788877754421  12344433321


Q ss_pred             cCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         446 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       446 ~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .-...-   ......+...+.+.|+|+|.++..
T Consensus       112 ~~~~~~---~~~~~~~l~~~~~~L~~gG~l~~~  141 (227)
T 1ve3_A          112 SIVHFE---PLELNQVFKEVRRVLKPSGKFIMY  141 (227)
T ss_dssp             CGGGCC---HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             chHhCC---HHHHHHHHHHHHHHcCCCcEEEEE
Confidence            100000   001123456677889999998766

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.40  E-value=2.8e-07  Score=92.31  Aligned_cols=121  Identities=11%  Similarity=0.137  Sum_probs=79.3

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c-c-cccccccccccccc------ccchh
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T-N-HIDLIANETIEIIP------HILDL  440 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~-~-~v~~i~~d~~~~l~------~~~d~  440 (511)
                      .++.+|||+|||+|.+++.+|+..  ..+|+++|+++++++.+++|+.   . . +++++.+|..+.++      ..+|.
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~  296 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV  296 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCE
Confidence            578999999999999999999763  2699999999988888777765   3 3 67888888766543      23555


Q ss_pred             hhhcccCCc----EEEEEcCCccHHHHHHHHHhCCCcEEEEh--------HHHHHHHHHHHHhcCC
Q psy7829         441 CYLNLHRGA----KVLEIGSGSGYLATLMAHLVGPTGHVTGL--------EHMMDIAIESIANIST  494 (511)
Q Consensus       441 i~~~l~~~~----~vLD~~~g~g~~~~~l~~~l~~~g~v~~~--------~~ml~~a~~~~~~~~~  494 (511)
                      ++.+.+...    .+.+...+...+.....+.++|+|.++..        +...+..++.+.+.|.
T Consensus       297 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~  362 (396)
T 3c0k_A          297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGR  362 (396)
T ss_dssp             EEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTC
T ss_pred             EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCC
Confidence            444332100    01111112233455567788999988764        3445555556666554

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.39  E-value=1.2e-07  Score=93.12  Aligned_cols=97  Identities=16%  Similarity=0.209  Sum_probs=60.8

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----cccccccccccccc-ccccchhhhhccc
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETIEI-IPHILDLCYLNLH  446 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~~~-l~~~~d~i~~~l~  446 (511)
                      -+|++|||||||+|.+++.+|+.. + .+|+|||.++ ++..+++++.    .++|++++++..+. ++..+|.++..+-
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~aG-A-~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~  158 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQAG-A-RRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWM  158 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTT-C-SEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCC
T ss_pred             cCCCEEEEeCCCccHHHHHHHHhC-C-CEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeecc
Confidence            378999999999999999888765 3 6899999884 5555554443    24477888775443 3444555544321


Q ss_pred             CCcEEEEEcCCccHH---HHHHHHHhCCCcEEE
Q psy7829         447 RGAKVLEIGSGSGYL---ATLMAHLVGPTGHVT  476 (511)
Q Consensus       447 ~~~~vLD~~~g~g~~---~~~l~~~l~~~g~v~  476 (511)
                      ..     ...+.+.+   .....+.|+|+|.++
T Consensus       159 ~~-----~l~~e~~l~~~l~a~~r~Lkp~G~~i  186 (376)
T 4hc4_A          159 GY-----GLLHESMLSSVLHARTKWLKEGGLLL  186 (376)
T ss_dssp             BT-----TBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred             cc-----cccccchhhhHHHHHHhhCCCCceEC
Confidence            10     11123222   233446789988764

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.39  E-value=3.9e-07  Score=84.96  Aligned_cols=105  Identities=16%  Similarity=0.155  Sum_probs=72.1

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHh------CCC-----ceEEEEeCCH---H-----------HHHHHHHHHhccCCCc-
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMV------GPT-----GKVIGVEHIP---E-----------LIEASLRNISKGNKDL-  185 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~------~~~-----~~v~~iD~~~---~-----------~~~~a~~~~~~~~~~~-  185 (511)
                      +++.+|||+|+|+|+.++.+++..      .|+     .+++++|..+   +           ..+.|++.++.+.... 
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            355799999999999998887764      453     5899999876   3           3346666665421000 


Q ss_pred             ------C--CCCCeEEEEccCCCCCCC--C---CCccEEEecCCC---------CchHHHHHhhcccCcEEEE
Q psy7829         186 ------L--DSGRVRIVEADAREGYLP--E---APYDVIYYGGCV---------SEVPSRVLNQLKKGGRILA  236 (511)
Q Consensus       186 ------~--~~~~v~~~~~d~~~~~~~--~---~~fD~I~~~~~~---------~~~~~~~~~~LkpgG~l~~  236 (511)
                            +  ...+++++.+|+.+..+.  .   ..||+|+.++-.         ..+.+.+.+.|+|||+|+.
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t  211 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT  211 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred             chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence                  0  124678999998753221  1   379999998522         1245799999999999985

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.39  E-value=7.1e-07  Score=83.06  Aligned_cols=105  Identities=15%  Similarity=0.210  Sum_probs=72.1

Q ss_pred             HHHHHhhcCCCC--CEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCc-CC--C-CCeEEEEc
Q psy7829         123 AAENLKLHLVDG--AKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDL-LD--S-GRVRIVEA  196 (511)
Q Consensus       123 ~~~~l~~~~~~~--~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~--~-~~v~~~~~  196 (511)
                      +.+.+.  ++++  .+|||+|||+|..+..++...   ++|+++|+++.+.+.++++++...... +.  . .+++++++
T Consensus        78 l~~al~--l~~g~~~~VLDl~~G~G~dal~lA~~g---~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~  152 (258)
T 2oyr_A           78 VAKAVG--IKGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA  152 (258)
T ss_dssp             HHHHTT--CBTTBCCCEEETTCTTCHHHHHHHHHT---CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEES
T ss_pred             HHHHhc--ccCCCCCEEEEcCCcCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEEC
Confidence            344443  5566  899999999999999999974   369999999998888777765321000 00  1 47999999


Q ss_pred             cCCCCCC-CCCCccEEEecCCCCchH-----HHHHhhcccCc
Q psy7829         197 DAREGYL-PEAPYDVIYYGGCVSEVP-----SRVLNQLKKGG  232 (511)
Q Consensus       197 d~~~~~~-~~~~fD~I~~~~~~~~~~-----~~~~~~LkpgG  232 (511)
                      |..+... ....||+|+++++++.-.     ++..+.|++.+
T Consensus       153 D~~~~L~~~~~~fDvV~lDP~y~~~~~saavkk~~~~lr~l~  194 (258)
T 2oyr_A          153 SSLTALTDITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLV  194 (258)
T ss_dssp             CHHHHSTTCSSCCSEEEECCCCCCCCC-----HHHHHHHHHS
T ss_pred             CHHHHHHhCcccCCEEEEcCCCCCcccchHHHHHHHHHHHhh
Confidence            9865222 124699999999886421     24456666544

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.38  E-value=7.2e-07  Score=92.89  Aligned_cols=96  Identities=24%  Similarity=0.186  Sum_probs=70.0

Q ss_pred             CCEEEEEcCCccHHH---HHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         134 GAKVLDLGSGSGYQT---CVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       134 ~~~vLDiG~G~G~~~---~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      +..|||+|||+|-++   +..++..+...+|+++|.++ +...+++..+.++    ..++|+++++|+++...+ .++|+
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~----~~dkVtVI~gd~eev~LP-EKVDI  431 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEE----WGSQVTVVSSDMREWVAP-EKADI  431 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHT----TGGGEEEEESCTTTCCCS-SCEEE
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhcc----CCCeEEEEeCcceeccCC-cccCE
Confidence            347999999999984   44444443344799999997 5667888888776    567899999999874333 78999


Q ss_pred             EEecCCC-----C---chHHHHHhhcccCcEEE
Q psy7829         211 IYYGGCV-----S---EVPSRVLNQLKKGGRIL  235 (511)
Q Consensus       211 I~~~~~~-----~---~~~~~~~~~LkpgG~l~  235 (511)
                      |++-..-     +   .++....+.|||||.++
T Consensus       432 IVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          432 IVSELLGSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             EECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence            9985321     1   22345568999999874

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.38  E-value=3.1e-07  Score=85.78  Aligned_cols=105  Identities=15%  Similarity=0.150  Sum_probs=66.0

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc--cccccccccccccc-cccchhhhhcc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST--NHIDLIANETIEII-PHILDLCYLNL  445 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~--~~v~~i~~d~~~~l-~~~~d~i~~~l  445 (511)
                      ....++.+|||+|||+|..+..+++..   .+|+++|+++++++.++++...  .+++++++|..+.. +..+|.+....
T Consensus        37 ~~~~~~~~vLDlGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~  113 (252)
T 1wzn_A           37 DAKREVRRVLDLACGTGIPTLELAERG---YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFF  113 (252)
T ss_dssp             TCSSCCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECS
T ss_pred             hcccCCCEEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEEEEcC
Confidence            344678899999999999999998763   7999999999999988877642  25777777754421 12233322110


Q ss_pred             cCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         446 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       446 ~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .... ..+. -..-.+...+.+.|+|+|.++.-
T Consensus       114 ~~~~-~~~~-~~~~~~l~~~~~~L~pgG~li~~  144 (252)
T 1wzn_A          114 STIM-YFDE-EDLRKLFSKVAEALKPGGVFITD  144 (252)
T ss_dssp             SGGG-GSCH-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             Cchh-cCCH-HHHHHHHHHHHHHcCCCeEEEEe
Confidence            0000 0000 00122345667888999988653

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.37  E-value=3.5e-07  Score=88.39  Aligned_cols=103  Identities=11%  Similarity=0.108  Sum_probs=74.4

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc--------ccccccccccccccc---cccch
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS--------TNHIDLIANETIEII---PHILD  439 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~--------~~~v~~i~~d~~~~l---~~~~d  439 (511)
                      ...+.+|||||||+|..+..+++.. +..+|+++|+++++++.+++++.        .++++++.+|+.+.+   +..+|
T Consensus        75 ~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD  153 (314)
T 1uir_A           75 HPEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD  153 (314)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCcc
Confidence            4567899999999999999998764 45799999999999998887763        357888888876654   34466


Q ss_pred             hhhhcccCCcEEEEEcCC------ccHHHHHHHHHhCCCcEEEEh
Q psy7829         440 LCYLNLHRGAKVLEIGSG------SGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       440 ~i~~~l~~~~~vLD~~~g------~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .++.+......   . .+      +-.+...+.+.|+|+|.++..
T Consensus       154 ~Ii~d~~~~~~---~-~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  194 (314)
T 1uir_A          154 VVIIDLTDPVG---E-DNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (314)
T ss_dssp             EEEEECCCCBS---T-TCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEECCCCccc---c-cCcchhccHHHHHHHHHHhcCCCcEEEEE
Confidence            66654332110   0 02      234566778889999988754

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.37  E-value=8e-07  Score=87.98  Aligned_cols=70  Identities=19%  Similarity=0.222  Sum_probs=53.2

Q ss_pred             HHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccccccc
Q psy7829         359 SIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEII  434 (511)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~l  434 (511)
                      .+..++..  +... +.+|||+|||+|.+++.+|+..   .+|+++|+++++++.+++|..   ..|++++.+|..+.+
T Consensus       202 l~~~~~~~--~~~~-~~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~  274 (369)
T 3bt7_A          202 MLEWALDV--TKGS-KGDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFT  274 (369)
T ss_dssp             HHHHHHHH--TTTC-CSEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHH
T ss_pred             HHHHHHHH--hhcC-CCEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHH
Confidence            34444444  3333 6789999999999999998754   799999999998888777764   457888888876554

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.36  E-value=1.2e-06  Score=79.46  Aligned_cols=113  Identities=12%  Similarity=0.108  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc-ccccccccccccc--
Q psy7829         357 ERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST-NHIDLIANETIEI--  433 (511)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~-~~v~~i~~d~~~~--  433 (511)
                      ...+...+..   .+.++.+|||+|||+|.++..+++.. + .+|+++|+++.+++.++++... ++++++.+|..+.  
T Consensus        29 ~~~~~~~l~~---~~~~~~~vLdiGcG~G~~~~~l~~~~-~-~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~  103 (215)
T 2pxx_A           29 FSSFRALLEP---ELRPEDRILVLGCGNSALSYELFLGG-F-PNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDF  103 (215)
T ss_dssp             HHHHHHHHGG---GCCTTCCEEEETCTTCSHHHHHHHTT-C-CCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCS
T ss_pred             HHHHHHHHHH---hcCCCCeEEEECCCCcHHHHHHHHcC-C-CcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCC
Confidence            3444444443   34788999999999999999998764 3 3899999999999998887653 5677777765442  


Q ss_pred             ccccchhhhhcccCCcEEEEEcC--------------CccHHHHHHHHHhCCCcEEEEh
Q psy7829         434 IPHILDLCYLNLHRGAKVLEIGS--------------GSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       434 l~~~~d~i~~~l~~~~~vLD~~~--------------g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .+..+|.++....-+.    +.|              ....+...+.+.|+|+|.++.+
T Consensus       104 ~~~~fD~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  158 (215)
T 2pxx_A          104 PSASFDVVLEKGTLDA----LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISM  158 (215)
T ss_dssp             CSSCEEEEEEESHHHH----HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCcccEEEECcchhh----hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEE
Confidence            1122333221100000    001              1133456677889999998877

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.35  E-value=1.3e-06  Score=80.46  Aligned_cols=100  Identities=14%  Similarity=0.178  Sum_probs=67.1

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccc--------cccccccccccc--cccchh
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH--------IDLIANETIEII--PHILDL  440 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~--------v~~i~~d~~~~l--~~~~d~  440 (511)
                      ++++.+|||+|||+|.++..+++..   .+|+++|+++.+++.++++....+        ++++.+|.....  +..+|.
T Consensus        28 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~  104 (235)
T 3sm3_A           28 LQEDDEILDIGCGSGKISLELASKG---YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDF  104 (235)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeE
Confidence            4689999999999999999999873   799999999999998888776433        456655543321  222333


Q ss_pred             hhhcccCCcEEEEEcCCcc---HHHHHHHHHhCCCcEEEEh
Q psy7829         441 CYLNLHRGAKVLEIGSGSG---YLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       441 i~~~l~~~~~vLD~~~g~g---~~~~~l~~~l~~~g~v~~~  478 (511)
                      ++...     ++..-....   .+...+.+.|+|+|.++..
T Consensus       105 v~~~~-----~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (235)
T 3sm3_A          105 AVMQA-----FLTSVPDPKERSRIIKEVFRVLKPGAYLYLV  140 (235)
T ss_dssp             EEEES-----CGGGCCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEcc-----hhhcCCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            32210     000000222   4567778889999998875

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.35  E-value=5.7e-07  Score=86.07  Aligned_cols=116  Identities=16%  Similarity=0.097  Sum_probs=71.6

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc-------cccccccccccc
Q psy7829         358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI-------STNHIDLIANET  430 (511)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~-------~~~~v~~i~~d~  430 (511)
                      .....+...  +...++.+|||||||+|..+..+++..   .+|+++|+++++++.++++.       ...++.+..++.
T Consensus        44 ~~~~~l~~~--l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~  118 (293)
T 3thr_A           44 EYKAWLLGL--LRQHGCHRVLDVACGTGVDSIMLVEEG---FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW  118 (293)
T ss_dssp             HHHHHHHHH--HHHTTCCEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCG
T ss_pred             HHHHHHHHH--hcccCCCEEEEecCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecCh
Confidence            334444444  455678999999999999999998764   69999999999999887664       134455666654


Q ss_pred             cccc-----cccchhhhhcccCCcEEEEEc---CCccHHHHHHHHHhCCCcEEEEh
Q psy7829         431 IEII-----PHILDLCYLNLHRGAKVLEIG---SGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       431 ~~~l-----~~~~d~i~~~l~~~~~vLD~~---~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ....     +..+|.++.....-..+.|+.   .....+...+.+.|+|||.++..
T Consensus       119 ~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  174 (293)
T 3thr_A          119 LTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID  174 (293)
T ss_dssp             GGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             hhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            4322     223443332100000000000   00234567788889999998866

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.35  E-value=8.7e-07  Score=83.65  Aligned_cols=92  Identities=20%  Similarity=0.250  Sum_probs=67.6

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccccccc--ccccchhhhhcccCCc
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEI--IPHILDLCYLNLHRGA  449 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~--l~~~~d~i~~~l~~~~  449 (511)
                      .++.+|||+|||+|.++..+++.. +..+|+++|+++++++.+.++.  .++.++.+|....  .+..+|.++..     
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~-----  155 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY--PQVTFCVASSHRLPFSDTSMDAIIRI-----  155 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC--TTSEEEECCTTSCSBCTTCEEEEEEE-----
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhC--CCcEEEEcchhhCCCCCCceeEEEEe-----
Confidence            578999999999999999999876 4579999999999999888775  4566666664332  12234444332     


Q ss_pred             EEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         450 KVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       450 ~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                             +.......+.+.|+|+|.++.+
T Consensus       156 -------~~~~~l~~~~~~L~pgG~l~~~  177 (269)
T 1p91_A          156 -------YAPCKAEELARVVKPGGWVITA  177 (269)
T ss_dssp             -------SCCCCHHHHHHHEEEEEEEEEE
T ss_pred             -------CChhhHHHHHHhcCCCcEEEEE
Confidence                   1123357788899999998877

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.34  E-value=2.9e-07  Score=82.81  Aligned_cols=54  Identities=15%  Similarity=0.266  Sum_probs=42.4

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHhhccccccccccccccc
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGP-TGHVTGLEHMMDIAIESIANISTNHIDLIANETIE  432 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~-~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~  432 (511)
                      ++++.+|||+|||+|..+..+++.+++ .++|+|+|+++..        ..++++++++|..+
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~--------~~~~v~~~~~d~~~   74 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD--------PIPNVYFIQGEIGK   74 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC--------CCTTCEEEECCTTT
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC--------CCCCceEEEccccc
Confidence            578899999999999999999998842 6899999998731        23456777666543

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.33  E-value=3.9e-07  Score=86.70  Aligned_cols=59  Identities=19%  Similarity=0.168  Sum_probs=45.3

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcC-CHHHHHHHHhhc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH-MMDIAIESIANI  418 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~-~~~~~~~~~~~~  418 (511)
                      +...+..+...  ....++.+|||+|||+|.+++.+++.. . .+|+++|+ ++++++.+++|.
T Consensus        64 ~~~l~~~l~~~--~~~~~~~~vLDlG~G~G~~~~~~a~~~-~-~~v~~~D~s~~~~~~~a~~n~  123 (281)
T 3bzb_A           64 ARALADTLCWQ--PELIAGKTVCELGAGAGLVSIVAFLAG-A-DQVVATDYPDPEILNSLESNI  123 (281)
T ss_dssp             HHHHHHHHHHC--GGGTTTCEEEETTCTTSHHHHHHHHTT-C-SEEEEEECSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc--chhcCCCeEEEecccccHHHHHHHHcC-C-CEEEEEeCCCHHHHHHHHHHH
Confidence            44444444443  344678899999999999999988753 2 59999999 899988888777

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.33  E-value=2.3e-07  Score=92.35  Aligned_cols=119  Identities=14%  Similarity=0.147  Sum_probs=76.7

Q ss_pred             CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccccccccc------ccchhhhh
Q psy7829         373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEIIP------HILDLCYL  443 (511)
Q Consensus       373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~l~------~~~d~i~~  443 (511)
                      ++.+|||+|||+|.+++.+|+..   .+|+++|+++.+++.+++|+.   ..+++++.+|..+.++      ..+|.++.
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~  285 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL  285 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence            78899999999999999999873   899999999988888877765   4457888888766543      23444443


Q ss_pred             cccCCc----EEEEEcCCccHHHHHHHHHhCCCcEEEEh--------HHHHHHHHHHHHhcCC
Q psy7829         444 NLHRGA----KVLEIGSGSGYLATLMAHLVGPTGHVTGL--------EHMMDIAIESIANIST  494 (511)
Q Consensus       444 ~l~~~~----~vLD~~~g~g~~~~~l~~~l~~~g~v~~~--------~~ml~~a~~~~~~~~~  494 (511)
                      +.+...    .+.+...+...+...+.+.|+|+|.++..        +...+..++.+...+.
T Consensus       286 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~  348 (382)
T 1wxx_A          286 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHR  348 (382)
T ss_dssp             CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence            322100    00000001122445567788999988765        2334445555555553

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.32  E-value=2.2e-07  Score=90.88  Aligned_cols=100  Identities=19%  Similarity=0.255  Sum_probs=66.1

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c-ccccccccccccc-cc-ccchhhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T-NHIDLIANETIEI-IP-HILDLCY  442 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~-~~v~~i~~d~~~~-l~-~~~d~i~  442 (511)
                      +.+.++.+|||||||+|.++..+++..  ..+|+|+|+++ +++.+++++.   . .+++++.+|..+. ++ ..+|.++
T Consensus        60 ~~~~~~~~VLDiGcGtG~ls~~la~~g--~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv  136 (340)
T 2fyt_A           60 PHIFKDKVVLDVGCGTGILSMFAAKAG--AKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVII  136 (340)
T ss_dssp             GGGTTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEE
T ss_pred             hhhcCCCEEEEeeccCcHHHHHHHHcC--CCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEE
Confidence            456789999999999999999998763  26999999995 7777776654   2 5678888876543 11 3455444


Q ss_pred             hcccCCcEEEEEcCCcc---HHHHHHHHHhCCCcEEE
Q psy7829         443 LNLHRGAKVLEIGSGSG---YLATLMAHLVGPTGHVT  476 (511)
Q Consensus       443 ~~l~~~~~vLD~~~g~g---~~~~~l~~~l~~~g~v~  476 (511)
                      .+.-..  .   .....   .+...+.+.|+|+|.++
T Consensus       137 s~~~~~--~---l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          137 SEWMGY--F---LLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             ECCCBT--T---BTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             EcCchh--h---ccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            322000  0   01111   23445568899999987

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.32  E-value=3.6e-07  Score=90.70  Aligned_cols=104  Identities=22%  Similarity=0.242  Sum_probs=67.9

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----cccccccccccccc-cccchhhhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETIEII-PHILDLCYL  443 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~~l-~~~~d~i~~  443 (511)
                      ..+.++.+|||||||+|.+++.+++.. . .+|+|+|++ ++++.+++++..    ++++++.+|..+.. +..+|.++.
T Consensus        59 ~~~~~~~~VLDlGcGtG~ls~~la~~g-~-~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~  135 (376)
T 3r0q_C           59 KHHFEGKTVLDVGTGSGILAIWSAQAG-A-RKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIIS  135 (376)
T ss_dssp             TTTTTTCEEEEESCTTTHHHHHHHHTT-C-SEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEE
T ss_pred             cccCCCCEEEEeccCcCHHHHHHHhcC-C-CEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEE
Confidence            456789999999999999999999874 2 599999999 888877766543    33788888765532 234555444


Q ss_pred             cccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829         444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       444 ~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~  477 (511)
                      +.-..  .++--.-...+...+.+.|+|+|.++.
T Consensus       136 ~~~~~--~l~~e~~~~~~l~~~~~~LkpgG~li~  167 (376)
T 3r0q_C          136 EWMGY--FLLRESMFDSVISARDRWLKPTGVMYP  167 (376)
T ss_dssp             CCCBT--TBTTTCTHHHHHHHHHHHEEEEEEEES
T ss_pred             cChhh--cccchHHHHHHHHHHHhhCCCCeEEEE
Confidence            22100  000000012344556688999998854

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.32  E-value=2.2e-07  Score=86.27  Aligned_cols=99  Identities=10%  Similarity=0.125  Sum_probs=66.5

Q ss_pred             CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc---cccccccccccccc--ccchhhhhcccC
Q psy7829         373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN---HIDLIANETIEIIP--HILDLCYLNLHR  447 (511)
Q Consensus       373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~---~v~~i~~d~~~~l~--~~~d~i~~~l~~  447 (511)
                      ++.+|||||||+|.++..+++...  .+|+++|+++.+++.++++....   +++++.+|..+...  ..+|.++.... 
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-  155 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV-  155 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC-
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcch-
Confidence            688999999999999999887652  69999999999999888877643   57777776443221  13444332210 


Q ss_pred             CcEEEEEcCCc--cHHHHHHHHHhCCCcEEEEh
Q psy7829         448 GAKVLEIGSGS--GYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       448 ~~~vLD~~~g~--g~~~~~l~~~l~~~g~v~~~  478 (511)
                          +..-...  -.+...+.+.|+|+|.++..
T Consensus       156 ----l~~~~~~~~~~~l~~~~~~LkpgG~l~i~  184 (241)
T 2ex4_A          156 ----IGHLTDQHLAEFLRRCKGSLRPNGIIVIK  184 (241)
T ss_dssp             ----GGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ----hhhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence                0000001  13456777889999998873

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.31  E-value=1.6e-06  Score=71.55  Aligned_cols=96  Identities=18%  Similarity=0.171  Sum_probs=68.3

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCcc-HHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSG-YQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD  197 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G-~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  197 (511)
                      |...+.+.+.....++.+|||||||+| ..+..|++..  ...|+++|+++.+++                    +++.|
T Consensus        21 m~e~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~--g~~V~atDInp~Av~--------------------~v~dD   78 (153)
T 2k4m_A           21 MWNDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHS--KVDLVLTDIKPSHGG--------------------IVRDD   78 (153)
T ss_dssp             HHHHHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHS--CCEEEEECSSCSSTT--------------------EECCC
T ss_pred             HHHHHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhC--CCeEEEEECCccccc--------------------eEEcc
Confidence            455566666656677889999999999 5999999854  357999999986432                    77888


Q ss_pred             CCCCCCCC-CCccEEEecCCCCchHHHHHhhcc-cCcEEEE
Q psy7829         198 AREGYLPE-APYDVIYYGGCVSEVPSRVLNQLK-KGGRILA  236 (511)
Q Consensus       198 ~~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~Lk-pgG~l~~  236 (511)
                      ++++.... ..||+|++..+...+...+.++-+ -|.-+++
T Consensus        79 iF~P~~~~Y~~~DLIYsirPP~El~~~i~~lA~~v~adliI  119 (153)
T 2k4m_A           79 ITSPRMEIYRGAALIYSIRPPAEIHSSLMRVADAVGARLII  119 (153)
T ss_dssp             SSSCCHHHHTTEEEEEEESCCTTTHHHHHHHHHHHTCEEEE
T ss_pred             CCCCcccccCCcCEEEEcCCCHHHHHHHHHHHHHcCCCEEE
Confidence            87644321 479999888777777655555443 3555655

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.31  E-value=1.2e-06  Score=77.84  Aligned_cols=73  Identities=22%  Similarity=0.221  Sum_probs=55.4

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc------cccccccc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS------TNHIDLIA  427 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~------~~~v~~i~  427 (511)
                      +...+..++++..   .+.+..+|||+||  ||.|+++|+.  ++++|+++|.++++++.+++++.      ..+++++.
T Consensus        14 ~~v~~~~~~~L~~---~l~~a~~VLEiGt--GySTl~lA~~--~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~   86 (202)
T 3cvo_A           14 LTMPPAEAEALRM---AYEEAEVILEYGS--GGSTVVAAEL--PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVW   86 (202)
T ss_dssp             CCSCHHHHHHHHH---HHHHCSEEEEESC--SHHHHHHHTS--TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEE
T ss_pred             ccCCHHHHHHHHH---HhhCCCEEEEECc--hHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEE
Confidence            4445556677765   3457889999998  6899999974  35999999999999888877664      34688888


Q ss_pred             cccccc
Q psy7829         428 NETIEI  433 (511)
Q Consensus       428 ~d~~~~  433 (511)
                      +++.+.
T Consensus        87 gda~~~   92 (202)
T 3cvo_A           87 TDIGPT   92 (202)
T ss_dssp             CCCSSB
T ss_pred             eCchhh
Confidence            886543

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.31  E-value=6e-07  Score=83.02  Aligned_cols=101  Identities=14%  Similarity=0.152  Sum_probs=65.6

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccc-cccchhhhhcccCCcE
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEII-PHILDLCYLNLHRGAK  450 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l-~~~~d~i~~~l~~~~~  450 (511)
                      .++.+|||+|||+|..+..+++..   .+|+++|+++++++.++++.  ++++++.+|..+.. +..+|.++.....-..
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~--~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~  113 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLTHARKRL--PDATLHQGDMRDFRLGRKFSAVVSMFSSVGY  113 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHHHHHHHC--TTCEEEECCTTTCCCSSCEEEEEECTTGGGG
T ss_pred             CCCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhC--CCCEEEECCHHHcccCCCCcEEEEcCchHhh
Confidence            678999999999999999999887   49999999999999988875  45777776654321 2233433310000000


Q ss_pred             EEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         451 VLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       451 vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +.+ ....-.+...+.+.|+|+|.++..
T Consensus       114 ~~~-~~~~~~~l~~~~~~L~pgG~l~~~  140 (239)
T 3bxo_A          114 LKT-TEELGAAVASFAEHLEPGGVVVVE  140 (239)
T ss_dssp             CCS-HHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             cCC-HHHHHHHHHHHHHhcCCCeEEEEE
Confidence            000 000123345667788999998765

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.30  E-value=1.1e-06  Score=87.36  Aligned_cols=108  Identities=16%  Similarity=0.161  Sum_probs=73.8

Q ss_pred             HHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----ccccccccccccccccc
Q psy7829         362 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETIEIIPHI  437 (511)
Q Consensus       362 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~~l~~~  437 (511)
                      .++..  +.+.++.+|||||||+|.++..+++.. |+.+++++|+ +.+++.+++++..    .+++++.+|..+.++..
T Consensus       173 ~~~~~--~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  248 (374)
T 1qzz_A          173 APADA--YDWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPVT  248 (374)
T ss_dssp             HHHHT--SCCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCC
T ss_pred             HHHHh--CCCCCCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCC
Confidence            34444  567788999999999999999999887 6689999999 9998888776542    36888888765544433


Q ss_pred             chhhhhcccCCcEEEEEcCCc--cHHHHHHHHHhCCCcEEEEh
Q psy7829         438 LDLCYLNLHRGAKVLEIGSGS--GYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       438 ~d~i~~~l~~~~~vLD~~~g~--g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +|.++...--.    ++. ..  -.+...+.+.++|+|.++.+
T Consensus       249 ~D~v~~~~vl~----~~~-~~~~~~~l~~~~~~L~pgG~l~i~  286 (374)
T 1qzz_A          249 ADVVLLSFVLL----NWS-DEDALTILRGCVRALEPGGRLLVL  286 (374)
T ss_dssp             EEEEEEESCGG----GSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCEEEEecccc----CCC-HHHHHHHHHHHHHhcCCCcEEEEE
Confidence            44443321000    000 01  13456777888999987764

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.30  E-value=3.5e-07  Score=84.88  Aligned_cols=71  Identities=14%  Similarity=0.097  Sum_probs=55.0

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c-ccccccccccccccc-ccchhhhhc
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T-NHIDLIANETIEIIP-HILDLCYLN  444 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~-~~v~~i~~d~~~~l~-~~~d~i~~~  444 (511)
                      ..++.+|||+|||+|.+++.+++..   .+|+++|+++.+++.+++++.   . .+++++++|..+..+ ..+|.++.+
T Consensus        76 ~~~~~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~  151 (241)
T 3gdh_A           76 SFKCDVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLS  151 (241)
T ss_dssp             HSCCSEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEEC
T ss_pred             ccCCCEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEEC
Confidence            3478999999999999999999764   899999999999888877764   3 468888888655432 345555543

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.30  E-value=3.3e-07  Score=89.50  Aligned_cols=94  Identities=13%  Similarity=0.059  Sum_probs=70.3

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----cccccccccccccccccchhhhhccc
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETIEIIPHILDLCYLNLH  446 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~~l~~~~d~i~~~l~  446 (511)
                      +.++.+|||+|||+|.+++. |+ .  ..+|+++|+++.+++.+++|+..    .+++++++|..+.+ ..+|.++.+.+
T Consensus       193 ~~~~~~VLDlg~G~G~~~l~-a~-~--~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-~~fD~Vi~dpP  267 (336)
T 2yx1_A          193 VSLNDVVVDMFAGVGPFSIA-CK-N--AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-VKGNRVIMNLP  267 (336)
T ss_dssp             CCTTCEEEETTCTTSHHHHH-TT-T--SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-CCEEEEEECCT
T ss_pred             cCCCCEEEEccCccCHHHHh-cc-C--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-CCCcEEEECCc
Confidence            36899999999999999999 87 2  38999999999888888777653    45788888877766 55666655433


Q ss_pred             CCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         447 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       447 ~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..         .-.+...+.+.++|+|.++..
T Consensus       268 ~~---------~~~~l~~~~~~L~~gG~l~~~  290 (336)
T 2yx1_A          268 KF---------AHKFIDKALDIVEEGGVIHYY  290 (336)
T ss_dssp             TT---------GGGGHHHHHHHEEEEEEEEEE
T ss_pred             Hh---------HHHHHHHHHHHcCCCCEEEEE
Confidence            22         124556677788999987765

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.30  E-value=5e-07  Score=88.73  Aligned_cols=102  Identities=20%  Similarity=0.268  Sum_probs=66.3

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cc-cccccccccccc-c-cccchhhhh
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TN-HIDLIANETIEI-I-PHILDLCYL  443 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~-~v~~i~~d~~~~-l-~~~~d~i~~  443 (511)
                      .+.++.+|||+|||+|.++..+++..  ..+|+|+|++ ++++.++++..   .. +++++.+|..+. + ...+|.++.
T Consensus        63 ~~~~~~~VLDvGcG~G~~~~~la~~g--~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis  139 (349)
T 3q7e_A           63 HLFKDKVVLDVGSGTGILCMFAAKAG--ARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIIS  139 (349)
T ss_dssp             HHHTTCEEEEESCTTSHHHHHHHHTT--CSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEE
T ss_pred             ccCCCCEEEEEeccchHHHHHHHHCC--CCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEE
Confidence            34578999999999999999999873  2699999999 57777766654   22 378888876553 2 244565554


Q ss_pred             cccCCcEEEEEcCCccHHHHHHHHHhCCCcEEE
Q psy7829         444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVT  476 (511)
Q Consensus       444 ~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~  476 (511)
                      +.....  +.-..-...+...+.+.|+|+|.++
T Consensus       140 ~~~~~~--l~~~~~~~~~l~~~~r~LkpgG~li  170 (349)
T 3q7e_A          140 EWMGYC--LFYESMLNTVLHARDKWLAPDGLIF  170 (349)
T ss_dssp             CCCBBT--BTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             cccccc--ccCchhHHHHHHHHHHhCCCCCEEc
Confidence            321000  0000112234456678899999874

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.28  E-value=3.5e-07  Score=96.54  Aligned_cols=73  Identities=12%  Similarity=0.200  Sum_probs=56.8

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---------cccccccccc
Q psy7829         358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---------STNHIDLIAN  428 (511)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---------~~~~v~~i~~  428 (511)
                      .....++..  +...++.+|||||||+|.++..+++..++..+|+|+|+++.+++.+++++         +..+++++++
T Consensus       708 qRle~LLel--L~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqG  785 (950)
T 3htx_A          708 QRVEYALKH--IRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDG  785 (950)
T ss_dssp             HHHHHHHHH--HHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEES
T ss_pred             HHHHHHHHH--hcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEEC
Confidence            334445554  45568999999999999999999987655579999999999999887733         3567888888


Q ss_pred             cccc
Q psy7829         429 ETIE  432 (511)
Q Consensus       429 d~~~  432 (511)
                      |..+
T Consensus       786 Da~d  789 (950)
T 3htx_A          786 SILE  789 (950)
T ss_dssp             CTTS
T ss_pred             chHh
Confidence            7654

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.28  E-value=8.5e-07  Score=87.91  Aligned_cols=108  Identities=19%  Similarity=0.275  Sum_probs=74.6

Q ss_pred             HHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----ccccccccccccccccc
Q psy7829         361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETIEIIPH  436 (511)
Q Consensus       361 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~~~l~~  436 (511)
                      ..++..  +...++.+|||||||+|.++..+++.. |+.+++++|+ +++++.+++++.    .++++++.+|..+.++.
T Consensus       192 ~~l~~~--~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~  267 (369)
T 3gwz_A          192 GQVAAA--YDFSGAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETIPD  267 (369)
T ss_dssp             HHHHHH--SCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCS
T ss_pred             HHHHHh--CCCccCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCCCC
Confidence            344444  567788999999999999999999987 7789999999 888888877654    35688888876544443


Q ss_pred             cchhhhhcccCCcEEEEEcCCcc---HHHHHHHHHhCCCcEEEEh
Q psy7829         437 ILDLCYLNLHRGAKVLEIGSGSG---YLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       437 ~~d~i~~~l~~~~~vLD~~~g~g---~~~~~l~~~l~~~g~v~~~  478 (511)
                      .+|.++...     ++ ......   .+...+.+.++|+|+++.+
T Consensus       268 ~~D~v~~~~-----vl-h~~~d~~~~~~L~~~~~~L~pgG~l~i~  306 (369)
T 3gwz_A          268 GADVYLIKH-----VL-HDWDDDDVVRILRRIATAMKPDSRLLVI  306 (369)
T ss_dssp             SCSEEEEES-----CG-GGSCHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             CceEEEhhh-----hh-ccCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            445443221     00 001111   3456677888999998775

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.28  E-value=8.8e-07  Score=80.26  Aligned_cols=94  Identities=14%  Similarity=0.129  Sum_probs=65.9

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCc-EEEEEcCCHHHHHHHHhhcccccccccccccccc--ccccchhhhhcccCC
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTG-HVTGLEHMMDIAIESIANISTNHIDLIANETIEI--IPHILDLCYLNLHRG  448 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~-~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~--l~~~~d~i~~~l~~~  448 (511)
                      .++.+|||+|||+|..+..+    +  . +|+++|+++++++.++++.  .+++++.+|..+.  .+..+|.++....-.
T Consensus        35 ~~~~~vLdiG~G~G~~~~~l----~--~~~v~~vD~s~~~~~~a~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  106 (211)
T 2gs9_A           35 PPGESLLEVGAGTGYWLRRL----P--YPQKVGVEPSEAMLAVGRRRA--PEATWVRAWGEALPFPGESFDVVLLFTTLE  106 (211)
T ss_dssp             CCCSEEEEETCTTCHHHHHC----C--CSEEEEECCCHHHHHHHHHHC--TTSEEECCCTTSCCSCSSCEEEEEEESCTT
T ss_pred             CCCCeEEEECCCCCHhHHhC----C--CCeEEEEeCCHHHHHHHHHhC--CCcEEEEcccccCCCCCCcEEEEEEcChhh
Confidence            38899999999999998877    2  5 9999999999999988887  5677777765432  122345444321100


Q ss_pred             cEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         449 AKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       449 ~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                           .-.....+...+.+.++|+|.++..
T Consensus       107 -----~~~~~~~~l~~~~~~L~pgG~l~i~  131 (211)
T 2gs9_A          107 -----FVEDVERVLLEARRVLRPGGALVVG  131 (211)
T ss_dssp             -----TCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -----hcCCHHHHHHHHHHHcCCCCEEEEE
Confidence                 0112345567788899999998776

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.28  E-value=4.7e-07  Score=79.28  Aligned_cols=54  Identities=13%  Similarity=0.353  Sum_probs=43.6

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccc
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIE  432 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~  432 (511)
                      +.++.+|||+|||+|..+..+++.++++.+++++|+++ +..       ..+++++.+|..+
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~-------~~~~~~~~~d~~~   73 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP-------IVGVDFLQGDFRD   73 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC-------CTTEEEEESCTTS
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc-------cCcEEEEEccccc
Confidence            67889999999999999999999876678999999998 532       2567777666543

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.27  E-value=5.2e-07  Score=80.75  Aligned_cols=53  Identities=19%  Similarity=0.367  Sum_probs=41.5

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCC--------cEEEEEcCCHHHHHHHHhhccccccccc-cccc
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPT--------GHVTGLEHMMDIAIESIANISTNHIDLI-ANET  430 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~--------~~v~~id~~~~~~~~~~~~~~~~~v~~i-~~d~  430 (511)
                      .++++.+|||+|||+|.++..+++..++.        ++|+++|+++..        ...+++++ .+|.
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~--------~~~~~~~~~~~d~   80 (196)
T 2nyu_A           19 ILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF--------PLEGATFLCPADV   80 (196)
T ss_dssp             CCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC--------CCTTCEEECSCCT
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc--------cCCCCeEEEeccC
Confidence            35789999999999999999999997543        799999999732        23456666 6653

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.26  E-value=7.1e-07  Score=79.59  Aligned_cols=51  Identities=18%  Similarity=0.339  Sum_probs=41.7

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccc
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIE  432 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~  432 (511)
                      ++++.+|||+|||+|..+..+++.   .++|+|+|+++..        ..++++++++|..+
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~--------~~~~v~~~~~D~~~   73 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME--------EIAGVRFIRCDIFK   73 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC--------CCTTCEEEECCTTS
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc--------cCCCeEEEEccccC
Confidence            578999999999999999999987   3899999998641        24578888887544

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.26  E-value=3.3e-07  Score=87.74  Aligned_cols=102  Identities=14%  Similarity=0.126  Sum_probs=58.3

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHh---CCCcEE--EEEcCCHHHHHHHHhhcc----cccccc--ccccccccc------
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLV---GPTGHV--TGLEHMMDIAIESIANIS----TNHIDL--IANETIEII------  434 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~---~~~~~v--~~id~~~~~~~~~~~~~~----~~~v~~--i~~d~~~~l------  434 (511)
                      .++.+|||||||+|.++..+++..   .++.+|  +++|++++|++.++++..    ..++.+  ...+..+..      
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence            567899999999998776443322   145654  999999999998877653    234433  233322211      


Q ss_pred             --cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         435 --PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       435 --~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                        +..||.+.....     +..-.........+.+.|+|||.++.+
T Consensus       131 ~~~~~fD~V~~~~~-----l~~~~d~~~~l~~~~r~LkpgG~l~i~  171 (292)
T 2aot_A          131 KELQKWDFIHMIQM-----LYYVKDIPATLKFFHSLLGTNAKMLII  171 (292)
T ss_dssp             TCCCCEEEEEEESC-----GGGCSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cCCCceeEEEEeee-----eeecCCHHHHHHHHHHHcCCCcEEEEE
Confidence              223444332210     000112334456677777787777654

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.24  E-value=3.7e-07  Score=88.37  Aligned_cols=102  Identities=12%  Similarity=0.141  Sum_probs=66.4

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----------cccccccccccccc-----
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----------NHIDLIANETIEII-----  434 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----------~~v~~i~~d~~~~l-----  434 (511)
                      ...++.+|||+|||+|..+..+++.  +..+|+++|+++++++.++++...          .+++++.+|.....     
T Consensus        31 ~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~  108 (313)
T 3bgv_A           31 KKKRDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKF  108 (313)
T ss_dssp             TC--CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTC
T ss_pred             ccCCCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhc
Confidence            3457889999999999999998874  347999999999999888776532          36777777754431     


Q ss_pred             ---cccchhhhhcccCCcEEEEEc-CC---ccHHHHHHHHHhCCCcEEEEh
Q psy7829         435 ---PHILDLCYLNLHRGAKVLEIG-SG---SGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       435 ---~~~~d~i~~~l~~~~~vLD~~-~g---~g~~~~~l~~~l~~~g~v~~~  478 (511)
                         +..+|.++....-.     .. ..   .-.+...+.+.|+|+|.++..
T Consensus       109 ~~~~~~fD~V~~~~~l~-----~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (313)
T 3bgv_A          109 RDPQMCFDICSCQFVCH-----YSFESYEQADMMLRNACERLSPGGYFIGT  154 (313)
T ss_dssp             SSTTCCEEEEEEETCGG-----GGGGSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             ccCCCCEEEEEEecchh-----hccCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence               11344443321100     00 01   113455667788999998877

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.24  E-value=7e-07  Score=87.68  Aligned_cols=100  Identities=17%  Similarity=0.196  Sum_probs=63.5

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c-ccccccccccccc-ccccchhhhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T-NHIDLIANETIEI-IPHILDLCYL  443 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~-~~v~~i~~d~~~~-l~~~~d~i~~  443 (511)
                      +...++.+|||||||+|.++..+++..  ..+|+++|+++ +++.+++++.   . ++++++.+|..+. ++..+|.++.
T Consensus        46 l~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D~Ivs  122 (348)
T 2y1w_A           46 HTDFKDKIVLDVGCGSGILSFFAAQAG--ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIIS  122 (348)
T ss_dssp             GGGTTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEEE
T ss_pred             cccCCcCEEEEcCCCccHHHHHHHhCC--CCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCceeEEEE
Confidence            556689999999999999999998753  26999999995 6666666543   3 5678888775543 2233444433


Q ss_pred             cccCCcEEEEEcCCcc--HHHHHHHHHhCCCcEEE
Q psy7829         444 NLHRGAKVLEIGSGSG--YLATLMAHLVGPTGHVT  476 (511)
Q Consensus       444 ~l~~~~~vLD~~~g~g--~~~~~l~~~l~~~g~v~  476 (511)
                      ......     .....  .....+.+.|+|+|.++
T Consensus       123 ~~~~~~-----~~~~~~~~~l~~~~~~LkpgG~li  152 (348)
T 2y1w_A          123 EPMGYM-----LFNERMLESYLHAKKYLKPSGNMF  152 (348)
T ss_dssp             CCCBTT-----BTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             eCchhc-----CChHHHHHHHHHHHhhcCCCeEEE
Confidence            211000     00111  22334467789988876

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.23  E-value=1.6e-07  Score=89.83  Aligned_cols=46  Identities=20%  Similarity=0.119  Sum_probs=36.0

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS  419 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~  419 (511)
                      .++.+|||||||+|..+..++...  ..+|+|+|+++++++.+++++.
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~~--~~~v~gvD~s~~~l~~a~~~~~  115 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQ  115 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHT
T ss_pred             CCCCeEEEECCCcChHHHHhhccC--CCeEEEeCCCHHHHHHHHHHHh
Confidence            478899999999999655454433  2699999999999988777543

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.23  E-value=7.1e-07  Score=86.87  Aligned_cols=102  Identities=20%  Similarity=0.255  Sum_probs=64.7

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc----ccccccccccccc-cc-ccchhhhh
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST----NHIDLIANETIEI-IP-HILDLCYL  443 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~----~~v~~i~~d~~~~-l~-~~~d~i~~  443 (511)
                      .+.++.+|||+|||+|.++..+++..  ..+|+++|++ .+++.+++++..    ++++++.+|..+. ++ ..+|.++.
T Consensus        35 ~~~~~~~VLDiGcGtG~ls~~la~~g--~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs  111 (328)
T 1g6q_1           35 DLFKDKIVLDVGCGTGILSMFAAKHG--AKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIIS  111 (328)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTC--CSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEE
T ss_pred             hhcCCCEEEEecCccHHHHHHHHHCC--CCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEE
Confidence            44678999999999999999998763  2699999999 577777666542    3477887775543 12 34555443


Q ss_pred             cccCCcEEEEEcCCccHHHHHHHHHhCCCcEEE
Q psy7829         444 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVT  476 (511)
Q Consensus       444 ~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~  476 (511)
                      ......  +.--.....+...+.+.|+|+|.++
T Consensus       112 ~~~~~~--l~~~~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          112 EWMGYF--LLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             CCCBTT--BSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eCchhh--cccHHHHHHHHHHHHhhcCCCeEEE
Confidence            311000  0000001233445568899999986

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.23  E-value=7.1e-07  Score=82.23  Aligned_cols=103  Identities=16%  Similarity=0.039  Sum_probs=67.9

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCcc
Q psy7829         130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYD  209 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  209 (511)
                      .++++.+|||+|||+|.++..+++.. +...++++|+..++....... ..      ...++..+..++.......++||
T Consensus        71 ~l~~~~~VLDLGaAPGGWSQvAa~~~-~~~~v~g~dVGvDl~~~pi~~-~~------~g~~ii~~~~~~dv~~l~~~~~D  142 (277)
T 3evf_A           71 YVKLEGRVIDLGCGRGGWCYYAAAQK-EVSGVKGFTLGRDGHEKPMNV-QS------LGWNIITFKDKTDIHRLEPVKCD  142 (277)
T ss_dssp             SSCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTCCCCCCC-CB------TTGGGEEEECSCCTTTSCCCCCS
T ss_pred             CCCCCCEEEEecCCCCHHHHHHHHhc-CCCcceeEEEeccCccccccc-Cc------CCCCeEEEeccceehhcCCCCcc
Confidence            36788899999999999999988764 345688888875431000000 00      01145556666433223447899


Q ss_pred             EEEecCCCC----ch--------HHHHHhhcccC-cEEEEEEcc
Q psy7829         210 VIYYGGCVS----EV--------PSRVLNQLKKG-GRILAPIGP  240 (511)
Q Consensus       210 ~I~~~~~~~----~~--------~~~~~~~Lkpg-G~l~~~~~~  240 (511)
                      +|+++.+.+    ++        ++.+.++|+|| |.+++-+..
T Consensus       143 lVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~  186 (277)
T 3evf_A          143 TLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA  186 (277)
T ss_dssp             EEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             EEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence            999987665    11        24457899999 999997775

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.23  E-value=6.8e-07  Score=88.51  Aligned_cols=88  Identities=19%  Similarity=0.306  Sum_probs=64.8

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-----cccccccccccccccc----ccchhh
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-----TNHIDLIANETIEIIP----HILDLC  441 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-----~~~v~~i~~d~~~~l~----~~~d~i  441 (511)
                      +.+|.+|||+|||+|..++.+|+..   .+|+++|+++.+++.+++|+.     ..+++++++|..+.++    ..+|.+
T Consensus        91 l~~g~~VLDLgcG~G~~al~LA~~g---~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV  167 (410)
T 3ll7_A           91 IREGTKVVDLTGGLGIDFIALMSKA---SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYI  167 (410)
T ss_dssp             SCTTCEEEESSCSSSHHHHHHHTTC---SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEE
T ss_pred             cCCCCEEEEeCCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEE
Confidence            3458999999999999999998764   799999999998888877764     4578999999877543    367888


Q ss_pred             hhcccC----CcEEEEEcCCccHH
Q psy7829         442 YLNLHR----GAKVLEIGSGSGYL  461 (511)
Q Consensus       442 ~~~l~~----~~~vLD~~~g~g~~  461 (511)
                      +.+.+.    ++++.++..-...+
T Consensus       168 ~lDPPrr~~~~grv~~led~~P~l  191 (410)
T 3ll7_A          168 YVDPARRSGADKRVYAIADCEPDL  191 (410)
T ss_dssp             EECCEEC-----CCCCGGGEESCH
T ss_pred             EECCCCcCCCCceEEehhhcCCCH
Confidence            776542    34555554333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	511
d1i1na_	224	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	9e-45
d1i1na_	224	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	9e-07
d1i1na_	224	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	3e-06
d1r18a_	223	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	5e-41
d1r18a_	223	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	6e-05
d1r18a_	223	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	7e-05
d1jg1a_	215	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	4e-29
d1vbfa_	224	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	3e-25
d1dl5a1	213	c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methylt	1e-19
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	9e-14
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	8e-08
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	2e-06
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	3e-12
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	6e-08
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	1e-07
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	4e-10
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	1e-09
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	1e-08
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	2e-07
d1o54a_	266	c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo	2e-09
d1o54a_	266	c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo	4e-04
d1o54a_	266	c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo	5e-04
d1g8aa_	227	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro	5e-08
d1g8aa_	227	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro	6e-04
d1g8aa_	227	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro	0.004
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	7e-07
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	1e-06
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	0.004
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	2e-05
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	3e-05
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	6e-05
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	2e-05
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	2e-04
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	2e-04
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	9e-05
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	1e-04
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	2e-04
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	5e-04
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	0.002
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	3e-04
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	0.002
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	0.003
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	0.004
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	0.004

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  155 bits (391), Expect = 9e-45
 Identities = 89/207 (42%), Positives = 127/207 (61%)

Query: 62  GTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIA 121
           G   ++L+++LR  G I+T++V +     DR ++A   PY D   S+G+   ++AP+  A
Sbjct: 5   GASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAPHMHA 64

Query: 122 DAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKG 181
            A E L   L +GAK LD+GSGSG  T  FA MVG TGKVIG++HI EL++ S+ N+ K 
Sbjct: 65  YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKD 124

Query: 182 NKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPM 241
           +  LL SGRV++V  D R GY  EAPYD I+ G     VP  +++QLK GGR++ P+GP 
Sbjct: 125 DPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPA 184

Query: 242 DDFQKLTQIDRFHDNTLQKTDLFEVAY 268
              Q L Q D+  D +++   L  V Y
Sbjct: 185 GGNQMLEQYDKLQDGSIKMKPLMGVIY 211

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 9e-07
 Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 6/129 (4%)

Query: 362 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN 421
           + L+L +  LH GAK L++GSGSG L    A +VG TG V G++H+ ++  +S+ N+  +
Sbjct: 65  YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKD 124

Query: 422 HIDLIANETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHL------VGPTGHV 475
              L+++  ++++     + Y        +    +       L+  L      + P G  
Sbjct: 125 DPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPA 184

Query: 476 TGLEHMMDI 484
            G + +   
Sbjct: 185 GGNQMLEQY 193

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 3e-06
 Identities = 25/73 (34%), Positives = 47/73 (64%)

Query: 436 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN 495
           + L+L +  LH GAK L++GSGSG L    A +VG TG V G++H+ ++  +S+ N+  +
Sbjct: 65  YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKD 124

Query: 496 HIDLIANETIEII 508
              L+++  ++++
Sbjct: 125 DPTLLSSGRVQLV 137

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 223

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  144 bits (365), Expect = 5e-41
 Identities = 79/212 (37%), Positives = 123/212 (58%), Gaps = 5/212 (2%)

Query: 62  GTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIA 121
           G    DL+  L+D G I ++ VAQA  + DR +++   PY D    +G    ++AP+  A
Sbjct: 9   GANNEDLIRQLKDHGVIASDAVAQAMKETDRKHYSPRNPYMDAPQPIGGGVTISAPHMHA 68

Query: 122 DAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTG-----KVIGVEHIPELIEASLR 176
            A E L+ HL  GA++LD+GSGSGY T  F   +   G     +++G+EH  EL+  S  
Sbjct: 69  FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKA 128

Query: 177 NISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILA 236
           N++  ++ +LDSG++ IVE D R+GY P APY+ I+ G    + P+ ++NQL  GGR++ 
Sbjct: 129 NLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIV 188

Query: 237 PIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAY 268
           P+GP    Q + Q D+  +  ++ T L  V Y
Sbjct: 189 PVGPDGGSQYMQQYDKDANGKVEMTRLMGVMY 220

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 223

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.1 bits (98), Expect = 6e-05
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%)

Query: 362 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTG-----HVTGLEHMMDIAIESIA 416
             L+    +L  GA++L++GSGSGYL       +   G      + G+EH  ++   S A
Sbjct: 69  FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKA 128

Query: 417 NISTNHIDLIANETIEIIPHI 437
           N++T+   ++ +  + I+   
Sbjct: 129 NLNTDDRSMLDSGQLLIVEGD 149

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 223

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.8 bits (97), Expect = 7e-05
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 435 PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTG-----HVTGLEHMMDIAIESI 489
              L+    +L  GA++L++GSGSGYL       +   G      + G+EH  ++   S 
Sbjct: 68  AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSK 127

Query: 490 ANISTNHIDLIANETIEIIR 509
           AN++T+   ++ +  + I+ 
Sbjct: 128 ANLNTDDRSMLDSGQLLIVE 147

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 215

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score =  112 bits (280), Expect = 4e-29
 Identities = 53/205 (25%), Positives = 101/205 (49%), Gaps = 14/205 (6%)

Query: 68  LVNHLRDIGKIRTERVAQAFYKVDRGNFANEE----PYQDVSASLGYAGVMNAPNQIADA 123
            V  L+  G IR++ V +AF K  R     ++     + D    +     ++AP+ +A  
Sbjct: 11  TVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIM 70

Query: 124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK 183
            E   L       +L++G+GSG+   + + +V     V  +E IPEL+E + RN+ +   
Sbjct: 71  LEIANLKPGM--NILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLER--- 123

Query: 184 DLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDD 243
                  V ++  D  +G+ P+APYDVI       ++P  ++ QLK GG+++ P+G    
Sbjct: 124 --AGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHL 181

Query: 244 FQKLTQIDRFHDNTLQKTDLFEVAY 268
           +Q+L ++ +   + ++  +   VA+
Sbjct: 182 WQELLEVRK-TKDGIKIKNHGGVAF 205

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} Length = 224

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

 Score =  101 bits (252), Expect = 3e-25
 Identities = 55/196 (28%), Positives = 88/196 (44%), Gaps = 16/196 (8%)

Query: 77  KIRTERVAQAFYKVDRGNFANEE----PYQDVSASLGYAGVMNAPNQIADAAENLKLHLV 132
           KI+T+ +A+AF KVDR  F  E      Y     +L     +N            +L L 
Sbjct: 10  KIKTQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDELDLH 69

Query: 133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVR 192
            G KVL++G+G GY T + A +V    KV+ VE   ++   + +        L     ++
Sbjct: 70  KGQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKL-------LSYYNNIK 119

Query: 193 IVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDR 252
           ++  D   GY  E PYD +        +  +   QLK+GG ++ PIG     QKL ++ +
Sbjct: 120 LILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGV-GRVQKLYKVIK 178

Query: 253 FHDNTLQKTDLFEVAY 268
              N+    +L EV +
Sbjct: 179 -KGNSPSLENLGEVMF 193

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 213

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

 Score = 85.4 bits (210), Expect = 1e-19
 Identities = 56/211 (26%), Positives = 94/211 (44%), Gaps = 18/211 (8%)

Query: 67  DLVNHLRDIGKIRTERVAQAFYKVDRGNFANEE-----PYQDVSASLGYAG----VMNAP 117
            L   L+  G   ++ +A+AF ++ R  F  +       Y+D+       G      + P
Sbjct: 4   KLFWILKKYG--VSDHIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQP 61

Query: 118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRN 177
           + +A   E + L    G +VL++G G+GY   V + +VG  G V+ VE+  ++ E + RN
Sbjct: 62  SLMALFMEWVGLD--KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRN 119

Query: 178 ISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP 237
           + +   +      V  V  D   G    +PYDVI+    V EVP     QLK+GGR++ P
Sbjct: 120 VERLGIE-----NVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVP 174

Query: 238 IGPMDDFQKLTQIDRFHDNTLQKTDLFEVAY 268
           I      ++   + +  D  L      E  +
Sbjct: 175 INLKLSRRQPAFLFKKKDPYLVGNYKLETRF 205

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 69.2 bits (169), Expect = 9e-14
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 3/123 (2%)

Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
           +  +  GA+VL+ G+GSG  T      VGP G+VI  E   +  E + RN+S       D
Sbjct: 91  EGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPD 150

Query: 188 SGRVRIVEADAREGYLPEAPYDVIYYGGCVS-EVPSRVLNQLKKGGRILAPIGPMDDFQK 246
               R+V +D  +  LP+   D          EV   V   L  GG ++  +  +    +
Sbjct: 151 --NWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSR 208

Query: 247 LTQ 249
           + +
Sbjct: 209 IVE 211

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 51.1 bits (122), Expect = 8e-08
 Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 6/95 (6%)

Query: 354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE 413
               +  A I+     ++  GA+VLE G+GSG L   +   VGP G V       +   +
Sbjct: 79  VIYPKDAAQIVH--EGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVIS----YEQRAD 132

Query: 414 SIANISTNHIDLIANETIEIIPHILDLCYLNLHRG 448
              +   N               + DL    L  G
Sbjct: 133 HAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDG 167

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 21/63 (33%), Positives = 30/63 (47%)

Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDL 499
           +   ++  GA+VLE G+GSG L   +   VGP G V   E   D A  +  N+S  +   
Sbjct: 89  VHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP 148

Query: 500 IAN 502
             N
Sbjct: 149 PDN 151

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (159), Expect = 3e-12
 Identities = 27/148 (18%), Positives = 46/148 (31%), Gaps = 9/148 (6%)

Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLL- 186
            + +  G  VL+ GSGSG  +   +  VG  G+VI  E   +  + + +N          
Sbjct: 93  MMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKL 152

Query: 187 -----DSGRVRIVEADAREGY--LPEAPYDVIYYG-GCVSEVPSRVLNQLKKGGRILAPI 238
                    V  +  D       +    +D +                 LK GG     +
Sbjct: 153 SHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYV 212

Query: 239 GPMDDFQKLTQIDRFHDNTLQKTDLFEV 266
             +    +L    R  +  L    + EV
Sbjct: 213 VNITQVIELLDGIRTCELALSCEKISEV 240

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 6e-08
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 12/107 (11%)

Query: 320 EKWIPQPPGYTTPGEITTRDKYGRLVHGSAPDNGPSSER--SIAHILDLCY----LNLHR 373
            K + + PG       ++  K   L   +  D     +R  +I    D+      ++++ 
Sbjct: 42  GKIVGKFPGQIL---RSSFGKQYMLRRPALEDYVVLMKRGTAITFPKDINMILSMMDINP 98

Query: 374 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIAN 417
           G  VLE GSGSG ++  ++  VG  G V   E      D+A ++  +
Sbjct: 99  GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKH 145

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 1e-07
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 434 IPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIA 490
           I  IL +  ++++ G  VLE GSGSG ++  ++  VG  G V   E      D+A ++  
Sbjct: 87  INMILSM--MDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYK 144

Query: 491 N 491
           +
Sbjct: 145 H 145

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 56.8 bits (136), Expect = 4e-10
 Identities = 28/131 (21%), Positives = 48/131 (36%), Gaps = 10/131 (7%)

Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
                     +D+G G+G  T   A  V     V  ++  PE I  +  N+ +       
Sbjct: 28  LAEPGKNDVAVDVGCGTGGVTLELAGRVRR---VYAIDRNPEAISTTEMNLQRHGL---- 80

Query: 188 SGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVP---SRVLNQLKKGGRILAPIGPMDDF 244
              V ++E DA E        D+   GG   E+      + ++LK GGRI+     ++  
Sbjct: 81  GDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLETK 140

Query: 245 QKLTQIDRFHD 255
            +  +  R   
Sbjct: 141 FEAMECLRDLG 151

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 56.2 bits (135), Expect = 1e-09
 Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 4/127 (3%)

Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
           +  L  G  +L++G GSG  +    + +   G +  VE   + ++ ++ N+     +  D
Sbjct: 80  RCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNL----SEFYD 135

Query: 188 SGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKL 247
            G VR   +D  +    +    VI           ++ + +K G      +   D  +K 
Sbjct: 136 IGNVRTSRSDIADFISDQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKT 195

Query: 248 TQIDRFH 254
                  
Sbjct: 196 VLSLSAS 202

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 53.5 bits (128), Expect = 1e-08
 Identities = 16/99 (16%), Positives = 41/99 (41%), Gaps = 7/99 (7%)

Query: 360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIA 416
            ++I+      L  G  +LE+G GSG +++ + + +   G +T +E     +  A+++++
Sbjct: 74  ASYIIM--RCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLS 131

Query: 417 NISTNHIDLIANETIE--IIPHILDLCYLNLHRGAKVLE 453
                     +   I   I   + D    ++      ++
Sbjct: 132 EFYDIGNVRTSRSDIADFISDQMYDAVIADIPDPWNHVQ 170

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 50.1 bits (119), Expect = 2e-07
 Identities = 12/55 (21%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIAN 491
           +    L  G  +LE+G GSG +++ + + +   G +T +E     +  A+++++ 
Sbjct: 78  IMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSE 132

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

 Score = 55.9 bits (134), Expect = 2e-09
 Identities = 42/236 (17%), Positives = 79/236 (33%), Gaps = 17/236 (7%)

Query: 37  KDMDEFPEGHWVIPPPDNLNHF----KNEGTCQTDL--VNHLRDIGKIRTERVAQAFYKV 90
           K  D    G  V+   ++ + F    + +    T L  ++      K   E +       
Sbjct: 6   KVADTLKPGDRVLLSFEDESEFLVDLEKDKKLHTHLGIIDLNEVFEKGPGEII---RTSA 62

Query: 91  DRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCV 150
            +  +       D   ++     +  P   +  A  L +   +G +++D G GSG    V
Sbjct: 63  GKKGYILIPSLIDEIMNMKRRTQIVYPKDSSFIAMMLDVK--EGDRIIDTGVGSGAMCAV 120

Query: 151 FAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV 210
            A  VG +GKV   E   E  + +  N+           RV I   D  EG+  +    +
Sbjct: 121 LARAVGSSGKVFAYEKREEFAKLAESNL----TKWGLIERVTIKVRDISEGFDEKDVDAL 176

Query: 211 IYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEV 266
                       +    LK GGR        +  Q+   + +  +    + +++E 
Sbjct: 177 FLDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQET--LKKLQELPFIRIEVWES 230

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.7 bits (92), Expect = 4e-04
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDI 410
               +  + I     L++  G ++++ G GSG +  ++A  VG +G V   E       +
Sbjct: 86  IVYPKDSSFIA--MMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKL 143

Query: 411 AIESIAN 417
           A  ++  
Sbjct: 144 AESNLTK 150

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.7 bits (92), Expect = 5e-04
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIAN 491
              L++  G ++++ G GSG +  ++A  VG +G V   E       +A  ++  
Sbjct: 96  AMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTK 150

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 51.6 bits (123), Expect = 5e-08
 Identities = 20/110 (18%), Positives = 39/110 (35%)

Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
             +  G  VL LG  SG      + +VG  GK+ G+E  P ++   +  + +    +   
Sbjct: 69  FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPIL 128

Query: 189 GRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPI 238
           G     E         +  ++ +        +       LK+GG  +  +
Sbjct: 129 GDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAV 178

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 39.3 bits (91), Expect = 6e-04
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 3/89 (3%)

Query: 356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAI 412
           S+   A +  L    +  G  VL +G  SG  A+ ++ +VG  G + G+E    ++   +
Sbjct: 56  SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV 115

Query: 413 ESIANISTNHIDLIANETIEIIPHILDLC 441
             +         L      E    ++   
Sbjct: 116 PIVEERRNIVPILGDATKPEEYRALVPKV 144

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.6 bits (84), Expect = 0.004
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 3/70 (4%)

Query: 440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDIAIESIANISTNH 496
           L    +  G  VL +G  SG  A+ ++ +VG  G + G+E    ++   +  +       
Sbjct: 66  LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIV 125

Query: 497 IDLIANETIE 506
             L      E
Sbjct: 126 PILGDATKPE 135

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 7e-07
 Identities = 22/119 (18%), Positives = 37/119 (31%), Gaps = 12/119 (10%)

Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
           ++ + D    +DLGSG G Q  +            GVE      + +     +  K +  
Sbjct: 146 EIKMTDDDLFVDLGSGVG-QVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKW 204

Query: 188 SG----RVRIVEADAREGYLPEAPYDV-------IYYGGCVSEVPSRVLNQLKKGGRIL 235
            G       +   D       E   +          +G  V          +K+GGRI+
Sbjct: 205 YGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIV 263

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 26/133 (19%), Positives = 49/133 (36%), Gaps = 16/133 (12%)

Query: 117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLR 176
           PN ++D  +  +  L  G   +DLGSG G      A   G      G E + +  + ++ 
Sbjct: 202 PNFLSDVYQ--QCQLKKGDTFMDLGSGVGNCVVQAALECGC-ALSFGCEIMDDASDLTIL 258

Query: 177 NISKGNKDLLDSG-RVRIVEADAREGYLPEAPYDVIYYGGCVSEVPS------------R 223
              +  K     G R+  VE   ++ ++       +     V  V +            +
Sbjct: 259 QYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEK 318

Query: 224 VLNQLKKGGRILA 236
           +L   K G +I++
Sbjct: 319 ILQTAKVGCKIIS 331

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.4 bits (86), Expect = 0.004
 Identities = 33/217 (15%), Positives = 58/217 (26%), Gaps = 22/217 (10%)

Query: 240 PMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKFQMDPVDENLFTLMDKD 299
           PM +  KL +            +  +      +  +          D  D   F      
Sbjct: 89  PMSEIGKLIEYSCLVFLPSPYAEQLKETILPDLNASF---------DNSDTKGFVNAINL 139

Query: 300 SDELFSERVWELKQDPLYTTEKWIPQPPGYTTPGEITTR---DKYGRLVH---GSAPDNG 353
            +++  E   +   D L T +K IP+   +     + TR    +  +L H    S    G
Sbjct: 140 YNKMIREIPRQRIIDHLETIDK-IPRSFIHDFLHIVYTRSIHPQANKLKHYKAFSNYVYG 198

Query: 354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE---HMMDI 410
                 ++ +       L +G   +++GSG G      A   G      G E      D+
Sbjct: 199 ELLPNFLSDVYQQ--CQLKKGDTFMDLGSGVGNCVVQAALECGC-ALSFGCEIMDDASDL 255

Query: 411 AIESIANISTNHIDLIANETIEIIPHILDLCYLNLHR 447
            I     +                         N   
Sbjct: 256 TILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVA 292

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 16/110 (14%), Positives = 38/110 (34%), Gaps = 1/110 (0%)

Query: 126 NLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDL 185
           N    +     ++D G G GY   V   ++    K  G++    L+  +         D 
Sbjct: 20  NTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDS 79

Query: 186 LDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRIL 235
                         +  +    +  + +      +  ++++ +KKGG+I+
Sbjct: 80  EFLEGDATEIELNDKYDIAIC-HAFLLHMTTPETMLQKMIHSVKKGGKII 128

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 421 NHIDLIANETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEH 480
           N  DL  N+  + +  +++     + +   +++ G G GYL  ++  L+      TG++ 
Sbjct: 4   NTRDLYYND--DYVSFLVNT-VWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDS 60

Query: 481 MM 482
             
Sbjct: 61  GE 62

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 42.6 bits (99), Expect = 6e-05
 Identities = 8/41 (19%), Positives = 18/41 (43%)

Query: 368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMM 408
              + +   +++ G G GYL  ++  L+      TG++   
Sbjct: 22  VWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGE 62

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMM 408
           P +E   A +  +  L +  G ++L++GSGSG +    A   G TG    +  + 
Sbjct: 16  PFTEEKYATLGRV--LRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLF 68

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 415 IANISTNHIDLIANETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGH 474
           I  IS +   +    T E    +  +  L +  G ++L++GSGSG +    A   G TG 
Sbjct: 3   IFTISESEHRIHNPFTEEKYATLGRV--LRMKPGTRILDLGSGSGEMLCTWARDHGITGT 60

Query: 475 VTGLEHMM 482
              +  + 
Sbjct: 61  GIDMSSLF 68

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 27/108 (25%), Positives = 39/108 (36%), Gaps = 1/108 (0%)

Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
            L +  G ++LDLGSGSG   C +A   G TG  I +  +        R    G  + + 
Sbjct: 28  VLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKR-RAEELGVSERVH 86

Query: 188 SGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRIL 235
                     A E     A     +  G  +     +   LK GG +L
Sbjct: 87  FIHNDAAGYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIML 134

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 41.6 bits (97), Expect = 9e-05
 Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 1/107 (0%)

Query: 129 LHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
           + +   +K+L LG+ +G      A +    G V  +E+ P ++   L   ++    +   
Sbjct: 70  MPIKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAERENIIPIL 128

Query: 189 GRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRIL 235
           G     +  A      +  Y+ +        +       LKKGG  +
Sbjct: 129 GDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGM 175

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 8/113 (7%)

Query: 127 LKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLL 186
            +L L    +VL LG+ SG      A +V   G +  VE+  +  E  L  + +      
Sbjct: 50  HRLKLRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEK-LLELVRERN--- 104

Query: 187 DSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIG 239
               +  +  DA + +      + +          +++          L   G
Sbjct: 105 ---NIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKG 154

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 27/165 (16%), Positives = 61/165 (36%), Gaps = 22/165 (13%)

Query: 121 ADAAENLKL-HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNIS 179
           +D A+ +++  L    +VLD+ +G G+    FA  V    KV+  +   ++++ +   I 
Sbjct: 2   SDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIE 58

Query: 180 KGNKDLLDSGRVRIVEADAREGYLPEAPY-DVIYYGGCVSEVPSRVLNQLKKGGRILAPI 238
                 ++  +    +    +            ++    +   S     LKKGG++L   
Sbjct: 59  GNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLL--- 115

Query: 239 GPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDIHKF 283
                           DN+  + D F+V Y+ + ++        +
Sbjct: 116 --------------LVDNSAPENDAFDVFYNYVEKERDYSHHRAW 146

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 39.2 bits (90), Expect = 5e-04
 Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 5/46 (10%)

Query: 360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE 405
           +A ++ +    L    +VL++ +G G++A   A  V     V   +
Sbjct: 4   LAKLMQI--AALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFD 44

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 3/37 (8%)

Query: 443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE 479
             L    +VL++ +G G++A   A  V     V   +
Sbjct: 11  AALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFD 44

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 3e-04
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 7/92 (7%)

Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
             H+     VLD+G G+G    +FA   G   KV+GV+    L +A              
Sbjct: 30  NPHIFKDKVVLDVGCGTGI-LSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKL----- 82

Query: 188 SGRVRIVEADAREGYLPEAPYDVIYYGGCVSE 219
              + +++    E +LP    DVI        
Sbjct: 83  EDTITLIKGKIEEVHLPVEKVDVIISEWMGYF 114

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 18/117 (15%), Positives = 31/117 (26%), Gaps = 15/117 (12%)

Query: 134 GAKVLDLGSGSGYQT-----CVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS 188
             K+L +G G+G         V A   G       VE   E I      ++K +      
Sbjct: 41  EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVK 100

Query: 189 GRVRIVEA----DAREGYLPEAPYDVIYYGGCVSEVPS------RVLNQLKKGGRIL 235
                  +               +D I+    +  V           + L    ++L
Sbjct: 101 FAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKML 157

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 14/114 (12%)

Query: 128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD 187
                   +VLD+G+G+G+    F+  V    + IGV+   E++E +     +   +   
Sbjct: 11  TAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVE--- 64

Query: 188 SGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSR------VLNQLKKGGRIL 235
              VR  +  A     P+  +D+I                  V   LK+ GR L
Sbjct: 65  --NVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFL 116

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 5/47 (10%)

Query: 359 SIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE 405
           S+  ++           +VL+IG+G+G+ A   +  V       G++
Sbjct: 4   SLGLMIKT--AECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVD 45

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 5/46 (10%)

Query: 436 HILDLC--YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLE 479
           H L L           +VL+IG+G+G+ A   +  V       G++
Sbjct: 3   HSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVD 45

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	511
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	100.0
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	100.0
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.97
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.96
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.94
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.71
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.7
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.69
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.69
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.68
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.68
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.66
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.64
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.64
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.63
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.63
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.58
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.57
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.56
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.56
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.55
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.54
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.54
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.54
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.54
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.52
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.52
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.52
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.52
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.52
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.5
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.49
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.49
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.48
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.47
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.47
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.46
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.45
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.45
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.45
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.45
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.44
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.44
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.44
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.44
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.43
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.42
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.42
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.4
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.38
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.36
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.35
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.35
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.34
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.3
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.29
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.26
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.25
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.25
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.25
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.24
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.23
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.23
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.22
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.22
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.21
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.19
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.19
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.19
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.19
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.19
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	99.18
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.18
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.16
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.16
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.14
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.13
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	99.13
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.13
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.12
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.12
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.11
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	99.11
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.1
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.08
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.07
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.06
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.05
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.99
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.92
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.9
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	98.89
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.86
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.85
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.84
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.84
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.82
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	98.81
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.8
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.8
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	98.78
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.77
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.77
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.77
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.76
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	98.73
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.73
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.73
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.73
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.73
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.72
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.72
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.7
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.69
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.67
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.66
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.66
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.65
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.63
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.63
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.63
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.62
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.62
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.59
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.57
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.55
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.55
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.54
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.54
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.52
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.5
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.5
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.5
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.49
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.49
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.48
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.48
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.48
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.46
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.45
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.45
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.45
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.44
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.43
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.42
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.42
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.38
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.37
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.35
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.34
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.33
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.31
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.3
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.28
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.28
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.26
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.23
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.22
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.21
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.21
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.21
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.19
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.19
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.16
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.14
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.12
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.11
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.1
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.09
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.03
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.0
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.0
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	97.98
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.88
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.66
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	97.62
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.53
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.45
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	97.43
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.4
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.3
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	97.3
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.27
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.27
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.27
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.22
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.21
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	97.16
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.15
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	97.11
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	97.1
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.08
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.08
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.05
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.03
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	96.97
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.93
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.9
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.85
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.85
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	96.76
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.74
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.69
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	96.68
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	96.66
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	96.65
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.55
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.52
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	96.48
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.46
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	96.44
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	96.38
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.38
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	96.25
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.19
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.19
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.13
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	96.13
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	96.06
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.05
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.05
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.98
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.96
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	95.87
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.77
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.41
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	95.41
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.38
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.22
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.18
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.08
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	95.01
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	94.83
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	94.79
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.67
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	94.39
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.39
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	94.36
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	94.28
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	94.25
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	94.24
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.24
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	94.18
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	94.11
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	94.07
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	94.02
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	94.01
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	93.77
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	93.6
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	93.38
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	93.34
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	93.24
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.09
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	93.06
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	93.04
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	93.0
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.1
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	91.91
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	91.79
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	91.62
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	91.42
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	91.04
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	91.01
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	90.68
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	90.48
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	90.22
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	89.96
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	89.89
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	89.47
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	89.17
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	88.48
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	88.33
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	87.12
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	86.47
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	85.96
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	85.42
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	85.15
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	84.92
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	84.17
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	80.94

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-35  Score=271.74  Aligned_cols=223  Identities=41%  Similarity=0.693  Sum_probs=203.6

Q ss_pred             ccCCCccHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCCCCCcccccCCCcccchhHHHHHHHHHHhhcCCCCCEE
Q psy7829          58 FKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKV  137 (511)
Q Consensus        58 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~a~~~~~r~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~v  137 (511)
                      |.+++.++..|+++|+..|.+.++.+.+||+.+||+.|+|..+|.|.++++++++++++|.+.+++++.|...+++|.+|
T Consensus         1 ~~s~~~~~~~mv~~l~~~g~i~~~~v~~a~~~vpRe~Fvp~~aY~D~~l~i~~~~~is~P~~~a~~le~L~~~l~~g~~V   80 (224)
T d1i1na_           1 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKA   80 (224)
T ss_dssp             CCCCCSSHHHHHHHHHHTTSCCSHHHHHHHHTSCGGGTCSSCTTSSSCEEEETTEEECCHHHHHHHHHHTTTTSCTTCEE
T ss_pred             CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhCCHHHcCCcccCCCCCccccchhhhhhhHHHHHHHHHHhhccCCCCeE
Confidence            67788999999999999998899999999999999999999999999999999999999999999999996568999999


Q ss_pred             EEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCC
Q psy7829         138 LDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCV  217 (511)
Q Consensus       138 LDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~  217 (511)
                      ||||||+|+.+..+|+..++.++|+++|+++++++.|++++++.+...+...++.++.+|+...++..++||+|+++..+
T Consensus        81 LdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I~~~~~~  160 (224)
T d1i1na_          81 LDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAA  160 (224)
T ss_dssp             EEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEECSBB
T ss_pred             EEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhhhhhcch
Confidence            99999999999999999988999999999999999999999875422223568999999998877777899999999999


Q ss_pred             CchHHHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEecccccccccc
Q psy7829         218 SEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKALQMDI  280 (511)
Q Consensus       218 ~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  280 (511)
                      ++++..+.++|||||+++++++.....+.+..+.+..++.+..+.++++.|+||.+...+|.+
T Consensus       161 ~~ip~~l~~~LkpGG~LV~pv~~~~~~q~l~~~~k~~~~~~~~~~l~~v~fvPl~~~~~~~~~  223 (224)
T d1i1na_         161 PVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSR  223 (224)
T ss_dssp             SSCCHHHHHTEEEEEEEEEEESCTTSCEEEEEEEECTTSCEEEEEEEEECCCBCCCHHHHCCC
T ss_pred             hhcCHHHHhhcCCCcEEEEEEccCCCcEEEEEEEEeCCCeEEEEEEeeEEEECCCCchhhccC
Confidence            999999999999999999999988778888899998888899999999999999988777753

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=2e-34  Score=262.11  Aligned_cols=217  Identities=36%  Similarity=0.649  Sum_probs=195.9

Q ss_pred             CCcccCCCccHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCCCCCcccccCCCcccchhHHHHHHHHHHhhcCCCC
Q psy7829          55 LNHFKNEGTCQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDG  134 (511)
Q Consensus        55 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~a~~~~~r~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~  134 (511)
                      .|.|.+++.++..|+++|+..|+++++.+.+||+.+||+.|+|..+|.|.+++++.++++++|.+.+++++.|...++++
T Consensus         2 ~~~~~s~~~~~~~lv~~l~~~gvi~~~~v~~a~~~vpRe~Fvp~~aY~D~~lpi~~~~~is~P~~~a~~l~~L~~~l~~g   81 (223)
T d1r18a_           2 HMAWRSVGANNEDLIRQLKDHGVIASDAVAQAMKETDRKHYSPRNPYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKPG   81 (223)
T ss_dssp             CCCCCCBCSSHHHHHHHHHHTTSCCCHHHHHHHHTSCGGGTCSSCTTBSSCEEEETTEEECCHHHHHHHHHHTTTTCCTT
T ss_pred             ccccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHhCCHHHcCCccccCCCCccccCCceeehhhhHHHHHHHHhhccCCC
Confidence            47899999999999999999998899999999999999999999999999999999999999999999999985458899


Q ss_pred             CEEEEEcCCccHHHHHHHHHhCCC-----ceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCcc
Q psy7829         135 AKVLDLGSGSGYQTCVFAHMVGPT-----GKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYD  209 (511)
Q Consensus       135 ~~vLDiG~G~G~~~~~la~~~~~~-----~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  209 (511)
                      .+|||||||+||.+..+++.+++.     .+|+++|+++++++.|++++...+.......|+.++++|+.+.++..++||
T Consensus        82 ~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~~fD  161 (223)
T d1r18a_          82 ARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPYN  161 (223)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGCSEE
T ss_pred             CeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccccccee
Confidence            999999999999999999987543     489999999999999999876532111134589999999998887778999


Q ss_pred             EEEecCCCCchHHHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEec
Q psy7829         210 VIYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAI  271 (511)
Q Consensus       210 ~I~~~~~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  271 (511)
                      +|+++.+++.++..+.++|||||+++++++.....+.+..+.+..++.+....++.|.|+||
T Consensus       162 ~Iiv~~a~~~~p~~l~~~Lk~gG~lV~pvg~~~~~q~l~~i~k~~~g~~~~~~l~~v~FvPL  223 (223)
T d1r18a_         162 AIHVGAAAPDTPTELINQLASGGRLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVMYVPL  223 (223)
T ss_dssp             EEEECSCBSSCCHHHHHTEEEEEEEEEEESCSSSCEEEEEEEECTTSCEEEEEEEEECCCCC
T ss_pred             eEEEEeechhchHHHHHhcCCCcEEEEEEecCCCcEEEEEEEEeCCCcEEEEEEeeEEeecC
Confidence            99999999999999999999999999999988788889999999888999999999999996

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.97  E-value=1.6e-30  Score=234.07  Aligned_cols=200  Identities=27%  Similarity=0.478  Sum_probs=183.7

Q ss_pred             cHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCC----CCCCcccccCCCcccchhHHHHHHHHHHhhcCCCCCEEEE
Q psy7829          64 CQTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEE----PYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLD  139 (511)
Q Consensus        64 ~~~~l~~~l~~~~~~~~~~~~~a~~~~~r~~~~~~~----~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~vLD  139 (511)
                      .+..++++|+..|+++++.+.+||+.+||+.|+|..    +|.|.+++++.+.++++|.+++++++.+.  ++++.+|||
T Consensus         7 ~~~~lv~~L~~~g~i~~~~v~~A~~~VpRe~Fvp~~~~~~AY~D~~l~i~~g~~is~P~~~a~ml~~L~--l~~g~~VLe   84 (215)
T d1jg1a_           7 KWMRTVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIAN--LKPGMNILE   84 (215)
T ss_dssp             HHHHHHHHHHHTTSCCSHHHHHHHHHSCGGGGSCGGGGGGTTSSSCEECSTTCEECCHHHHHHHHHHHT--CCTTCCEEE
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHcCCchhcCCHHHhhcccccCCcccchhhhhhhhhhHHHHHHhhc--cCccceEEE
Confidence            457899999999988999999999999999999974    89999999999999999999999999998  999999999


Q ss_pred             EcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCCc
Q psy7829         140 LGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSE  219 (511)
Q Consensus       140 iG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~  219 (511)
                      ||||+||.+..+++.++  ++|+++|.++++++.|++++.+.     +.+|+.++++|....++..++||+|++..+.+.
T Consensus        85 IGsGsGY~taila~l~g--~~V~~ie~~~~l~~~a~~~l~~~-----g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~~~  157 (215)
T d1jg1a_          85 VGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERA-----GVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPK  157 (215)
T ss_dssp             ECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHT-----TCCSEEEEESCGGGCCGGGCCEEEEEECSBBSS
T ss_pred             ecCCCChhHHHHHHhhC--ceeEEEeccHHHHHHHHHHHHHc-----CCceeEEEECccccCCcccCcceeEEeeccccc
Confidence            99999999999999874  57999999999999999999985     478999999999988877799999999999999


Q ss_pred             hHHHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEeccc
Q psy7829         220 VPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMR  273 (511)
Q Consensus       220 ~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  273 (511)
                      ++..+.++|||||+++++++.....+.+..+.+. .+.+....++.+.|+||.+
T Consensus       158 ip~~l~~qL~~gGrLv~pv~~~~~~q~l~~~~k~-~~~~~~~~l~~v~fvPl~g  210 (215)
T d1jg1a_         158 IPEPLIEQLKIGGKLIIPVGSYHLWQELLEVRKT-KDGIKIKNHGGVAFVPLIG  210 (215)
T ss_dssp             CCHHHHHTEEEEEEEEEEECSSSSCEEEEEEEEE-TTEEEEEEEEEECCCBCBS
T ss_pred             CCHHHHHhcCCCCEEEEEEccCCccEEEEEEEEE-CCEEEEEEEccEEEEcCCC
Confidence            9999999999999999999988777778778776 4558889999999999974

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=2.1e-28  Score=221.87  Aligned_cols=200  Identities=28%  Similarity=0.398  Sum_probs=171.7

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCC-----CCCCccccc----CCCcccchhHHHHHHHHHHhhcCCCCC
Q psy7829          65 QTDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEE-----PYQDVSASL----GYAGVMNAPNQIADAAENLKLHLVDGA  135 (511)
Q Consensus        65 ~~~l~~~l~~~~~~~~~~~~~a~~~~~r~~~~~~~-----~y~~~~~~~----~~~~~~~~p~~~~~~~~~l~~~~~~~~  135 (511)
                      ++.|++.|+..|+  ++.+.+||..+||+.|+|..     .|.+.++..    ....++++|.+.+++++.+.  +++|+
T Consensus         2 ~~~l~~~l~~~gi--~~~v~~a~~~v~Re~Fv~~~~~~~~~~~d~~~~~~~~~~~~~~i~~P~~~a~~l~~l~--l~~g~   77 (213)
T d1dl5a1           2 REKLFWILKKYGV--SDHIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGM   77 (213)
T ss_dssp             HHHHHHHHHHTTC--CHHHHHHHHHSCGGGGCSSCCCHHHHTSSSCEEEEECSSCEEEECCHHHHHHHHHHTT--CCTTC
T ss_pred             HHHHHHHHHHcCC--CHHHHHHHHcCCHHHcCCchhhhhhhccCcccCcccCCccceeeccchhhHHHHHhhh--ccccc
Confidence            4679999999995  56899999999999999864     456666543    35577899999999999997  99999


Q ss_pred             EEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecC
Q psy7829         136 KVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGG  215 (511)
Q Consensus       136 ~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~  215 (511)
                      +|||||||+|+.+..+++.+++.++|+++|+++.+++.|+++++..     ...|+.++++|+.+.++..++||+|+++.
T Consensus        78 ~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~-----~~~n~~~~~~d~~~~~~~~~~fD~I~~~~  152 (213)
T d1dl5a1          78 RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL-----GIENVIFVCGDGYYGVPEFSPYDVIFVTV  152 (213)
T ss_dssp             EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT-----TCCSEEEEESCGGGCCGGGCCEEEEEECS
T ss_pred             eEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhh-----cccccccccCchHHccccccchhhhhhhc
Confidence            9999999999999999999988999999999999999999999885     46789999999988777668899999999


Q ss_pred             CCCchHHHHHhhcccCcEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEeccc
Q psy7829         216 CVSEVPSRVLNQLKKGGRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMR  273 (511)
Q Consensus       216 ~~~~~~~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  273 (511)
                      +++++++.+.++|||||+|+++++............+..++.+.....+.++|+|+.+
T Consensus       153 ~~~~~p~~l~~~LkpGG~lv~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fvpl~g  210 (213)
T d1dl5a1         153 GVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKKDPYLVGNYKLETRFITAGG  210 (213)
T ss_dssp             BBSCCCHHHHHHEEEEEEEEEEBCBGGGTBCEEEEEEEETTEEEEEEEEECCCCBCCG
T ss_pred             cHHHhHHHHHHhcCCCcEEEEEECccCCcEEEEEEEEEeCCeEEEEEEeeEEEEECCC
Confidence            9999999999999999999999876554444444444457788888889999999875

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.94  E-value=3.3e-27  Score=213.65  Aligned_cols=184  Identities=30%  Similarity=0.402  Sum_probs=162.6

Q ss_pred             CCCHHHHHHHHhCCCCCccCCC----CCCCc--ccccCCCcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHH
Q psy7829          78 IRTERVAQAFYKVDRGNFANEE----PYQDV--SASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVF  151 (511)
Q Consensus        78 ~~~~~~~~a~~~~~r~~~~~~~----~y~~~--~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l  151 (511)
                      ++++.+.+||+.+||+.|+|..    +|.+.  +++++.+.++++|.+.+.+++.+.  ++++.+|||||||+|+.+..+
T Consensus        11 I~~~~v~~A~~~VpRe~Fvp~~~~~~AY~d~~~~l~i~~g~~~~~p~~~a~ml~~L~--l~~g~~VLdIG~GsGy~ta~L   88 (224)
T d1vbfa_          11 IKTQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDELD--LHKGQKVLEIGTGIGYYTALI   88 (224)
T ss_dssp             CCCHHHHHHHHHSCHHHHSCGGGGGGSSSSTTCCEEEETTEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHH
T ss_pred             CCCHHHHHHHHcCcHHHcCChhhhhcCccCcccCcccCCCCceehhhhHHHHHHHhh--hcccceEEEecCCCCHHHHHH
Confidence            5899999999999999999874    78765  477888999999999999999997  999999999999999999999


Q ss_pred             HHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCCchHHHHHhhcccC
Q psy7829         152 AHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQLKKG  231 (511)
Q Consensus       152 a~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~~~~~~~Lkpg  231 (511)
                      ++..   ++|+++|+++.+++.|++++..       ..|+.++.+|+...++..++||+|++..+.++++..+.++||||
T Consensus        89 a~l~---~~V~aiE~~~~~~~~A~~~~~~-------~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~~ip~~l~~qLk~G  158 (224)
T d1vbfa_          89 AEIV---DKVVSVEINEKMYNYASKLLSY-------YNNIKLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEG  158 (224)
T ss_dssp             HHHS---SEEEEEESCHHHHHHHHHHHTT-------CSSEEEEESCGGGCCGGGCCEEEEEESSBBSSCCHHHHHTEEEE
T ss_pred             HHHh---cccccccccHHHHHHHHHHHhc-------ccccccccCchhhcchhhhhHHHHHhhcchhhhhHHHHHhcCCC
Confidence            9975   4699999999999999998765       35899999999887776789999999999999999999999999


Q ss_pred             cEEEEEEccCCCcceEEEEEEecCCeEEEEeecceEEEeccccc
Q psy7829         232 GRILAPIGPMDDFQKLTQIDRFHDNTLQKTDLFEVAYDAIMRKA  275 (511)
Q Consensus       232 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  275 (511)
                      |+|+++++.. ..+.+..+.+. .+.+..+.++.+.|+||.+..
T Consensus       159 GrLV~pvg~~-~~q~l~~i~k~-~~~~~~~~l~~v~F~pl~g~~  200 (224)
T d1vbfa_         159 GIMILPIGVG-RVQKLYKVIKK-GNSPSLENLGEVMFGRIGGLY  200 (224)
T ss_dssp             EEEEEEECSS-SSEEEEEEECC-TTSCEEEEEEEECCCBCCSTT
T ss_pred             CEEEEEEcCC-CceEEEEEEEE-CCceEEEEeeeEEEEECCCcc
Confidence            9999999864 56778888876 456888889999999987644

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.71  E-value=2e-17  Score=151.98  Aligned_cols=112  Identities=22%  Similarity=0.326  Sum_probs=96.5

Q ss_pred             hHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829         117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA  196 (511)
Q Consensus       117 p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  196 (511)
                      ++....+++.+.  +++|.+|||||||+|.++..+++.+   .+|+|+|+|+.|++.|++++...+     .+++.++++
T Consensus         2 ~~~~~~l~~~~~--~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~-----~~~~~~~~~   71 (234)
T d1xxla_           2 HHSLGLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKG-----VENVRFQQG   71 (234)
T ss_dssp             HHHHHHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHT-----CCSEEEEEC
T ss_pred             chHHHHHHHHhC--CCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhcccc-----ccccccccc
Confidence            345566777776  9999999999999999999999875   369999999999999999988753     568999999


Q ss_pred             cCCCCCCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEE
Q psy7829         197 DAREGYLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       197 d~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~  238 (511)
                      |+.+.+.++++||+|++..+++++      .+++.++|||||++++..
T Consensus        72 d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          72 TAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             BTTBCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEE
Confidence            998766567899999999988765      378999999999998854

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.70  E-value=8.3e-17  Score=148.00  Aligned_cols=128  Identities=26%  Similarity=0.330  Sum_probs=109.6

Q ss_pred             cCCCcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCC
Q psy7829         108 LGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD  187 (511)
Q Consensus       108 ~~~~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~  187 (511)
                      .....++..|.-.+.++..+.  ++||.+|||+|||+|+++..||+.++|.++|+++|+++++++.|++|++....  ..
T Consensus        73 ~~r~tqiiypkD~s~Ii~~l~--i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~--~~  148 (264)
T d1i9ga_          73 MPRGPQVIYPKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG--QP  148 (264)
T ss_dssp             SCSCSCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT--SC
T ss_pred             ccCCccccchHHHHHHHHHhC--CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhcc--CC
Confidence            334566778888899999997  99999999999999999999999999999999999999999999999887421  13


Q ss_pred             CCCeEEEEccCCCCCCCCCCccEEEecCCCCc-hHHHHHhhcccCcEEEEEEc
Q psy7829         188 SGRVRIVEADAREGYLPEAPYDVIYYGGCVSE-VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       188 ~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~-~~~~~~~~LkpgG~l~~~~~  239 (511)
                      .+|+.+.++|+.+...++++||.|+++.+-++ ....+.+.|||||++++.+.
T Consensus       149 ~~nv~~~~~d~~~~~~~~~~fDaV~ldlp~P~~~l~~~~~~LkpGG~lv~~~P  201 (264)
T d1i9ga_         149 PDNWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVA  201 (264)
T ss_dssp             CTTEEEECSCGGGCCCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             CceEEEEecccccccccCCCcceEEEecCCHHHHHHHHHhccCCCCEEEEEeC
Confidence            57899999999876555689999999877654 56899999999999998654

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.69  E-value=5.8e-17  Score=148.14  Aligned_cols=124  Identities=17%  Similarity=0.158  Sum_probs=93.8

Q ss_pred             CCCcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCC
Q psy7829         109 GYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS  188 (511)
Q Consensus       109 ~~~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~  188 (511)
                      ..+.++..|.-.+.++..+.  ++||.+|||+|||+|+++..+|+.+++.++|+++|+++++++.|++|+++++    ..
T Consensus        63 ~r~~qiiypkD~~~Ii~~l~--i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~----~~  136 (250)
T d1yb2a1          63 RRNTQIISEIDASYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY----DI  136 (250)
T ss_dssp             ------------------CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS----CC
T ss_pred             CCCCcccCHHHHHHHHHHcC--CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc----CC
Confidence            34556666666777787776  8999999999999999999999999899999999999999999999998864    56


Q ss_pred             CCeEEEEccCCCCCCCCCCccEEEecCCCCc-hHHHHHhhcccCcEEEEEEc
Q psy7829         189 GRVRIVEADAREGYLPEAPYDVIYYGGCVSE-VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       189 ~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~-~~~~~~~~LkpgG~l~~~~~  239 (511)
                      .|+++..+|+.+..+ ++.||.|+++.+-++ +.+.+.+.|||||++++.+.
T Consensus       137 ~nv~~~~~Di~~~~~-~~~fD~V~ld~p~p~~~l~~~~~~LKpGG~lv~~~P  187 (250)
T d1yb2a1         137 GNVRTSRSDIADFIS-DQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLP  187 (250)
T ss_dssp             TTEEEECSCTTTCCC-SCCEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred             CceEEEEeeeecccc-cceeeeeeecCCchHHHHHHHHHhcCCCceEEEEeC
Confidence            799999999987654 478999999866543 56899999999999998655

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.69  E-value=5.8e-17  Score=148.61  Aligned_cols=107  Identities=22%  Similarity=0.333  Sum_probs=92.5

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829         121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE  200 (511)
Q Consensus       121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  200 (511)
                      +++++.+.  ++++.+|||||||+|.++..+++..   .+|+|+|+|+.+++.|++++...     ..++++|+++|+.+
T Consensus         5 ~~ll~~~~--l~~~~rVLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~i~~A~~~~~~~-----~~~~i~~~~~d~~~   74 (231)
T d1vl5a_           5 AKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGN-----GHQQVEYVQGDAEQ   74 (231)
T ss_dssp             HHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHT-----TCCSEEEEECCC-C
T ss_pred             HHHHHhcC--CCCcCEEEEecccCcHHHHHHHHhC---CEEEEEECCHHHHhhhhhccccc-----cccccccccccccc
Confidence            45677776  8999999999999999999999875   37999999999999999998875     46789999999987


Q ss_pred             CCCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEE
Q psy7829         201 GYLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       201 ~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~  237 (511)
                      .+.+.++||+|++..+++++      ++++.++|||||++++.
T Consensus        75 l~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~  117 (231)
T d1vl5a_          75 MPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLV  117 (231)
T ss_dssp             CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEE
Confidence            65566899999999998776      37899999999999984

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=6.9e-17  Score=149.54  Aligned_cols=139  Identities=18%  Similarity=0.250  Sum_probs=115.5

Q ss_pred             CCCCCCCcccccCCCcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy7829          97 NEEPYQDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLR  176 (511)
Q Consensus        97 ~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~  176 (511)
                      ....|.+..+.+..++.+++|.+...+...+......+.+|||+|||||.+++.++... |+.+|+++|+|+.+++.|++
T Consensus        72 G~~~F~~~~~~v~~~VlIPRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~-p~~~v~avDis~~Al~~A~~  150 (274)
T d2b3ta1          72 GVREFWSLPLFVSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQR  150 (274)
T ss_dssp             CEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHH
T ss_pred             CcEEEeeeEEEEeccccccccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhC-CcceeeeccchhHHHhHHHH
Confidence            33578889999999999999988776655555445567899999999999999999987 88999999999999999999


Q ss_pred             HHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCC-------------------------------chHHHHH
Q psy7829         177 NISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVS-------------------------------EVPSRVL  225 (511)
Q Consensus       177 ~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~-------------------------------~~~~~~~  225 (511)
                      |++.++     ..|++|+++|..+... ..+||+|++|+|+-                               .+...+.
T Consensus       151 Na~~~~-----~~~v~~~~~d~~~~~~-~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~  224 (274)
T d2b3ta1         151 NAQHLA-----IKNIHILQSDWFSALA-GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSR  224 (274)
T ss_dssp             HHHHHT-----CCSEEEECCSTTGGGT-TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHG
T ss_pred             HHHHhC-----cccceeeecccccccC-CCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHH
Confidence            999874     4689999999987543 36899999998871                               1225667


Q ss_pred             hhcccCcEEEEEEccCC
Q psy7829         226 NQLKKGGRILAPIGPMD  242 (511)
Q Consensus       226 ~~LkpgG~l~~~~~~~~  242 (511)
                      +.|+|||.+++.++..+
T Consensus       225 ~~L~~~G~l~lEig~~q  241 (274)
T d2b3ta1         225 NALVSGGFLLLEHGWQQ  241 (274)
T ss_dssp             GGEEEEEEEEEECCSSC
T ss_pred             HhcCCCCEEEEEECchH
Confidence            89999999999887654

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=1.1e-16  Score=148.10  Aligned_cols=114  Identities=25%  Similarity=0.290  Sum_probs=96.5

Q ss_pred             hhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEE
Q psy7829         116 APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE  195 (511)
Q Consensus       116 ~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  195 (511)
                      .+...+.+.+.+.  +.||.+|||||||+|..+..+++..  .++|+|+|+|+.+++.|+++....|    ..++++|++
T Consensus        18 ~~~~~~~l~~~~~--l~pg~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~g----l~~~v~~~~   89 (245)
T d1nkva_          18 TEEKYATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELG----VSERVHFIH   89 (245)
T ss_dssp             CHHHHHHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEE
T ss_pred             CHHHHHHHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhh----ccccchhhh
Confidence            3446666777776  8899999999999999999999876  3689999999999999999998876    356799999


Q ss_pred             ccCCCCCCCCCCccEEEecCCCCch------HHHHHhhcccCcEEEEEE
Q psy7829         196 ADAREGYLPEAPYDVIYYGGCVSEV------PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       196 ~d~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l~~~~  238 (511)
                      +|+.+.. .+++||+|++..+++++      ++++.+.|||||++++..
T Consensus        90 ~d~~~~~-~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~  137 (245)
T d1nkva_          90 NDAAGYV-ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE  137 (245)
T ss_dssp             SCCTTCC-CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             hHHhhcc-ccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEe
Confidence            9998754 45889999998887665      378999999999999853

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.66  E-value=1.8e-16  Score=139.91  Aligned_cols=117  Identities=24%  Similarity=0.269  Sum_probs=98.6

Q ss_pred             cchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEE
Q psy7829         114 MNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI  193 (511)
Q Consensus       114 ~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~  193 (511)
                      .+..++.+.++..+.  ++++.+|||+|||+|.+++.+|+..   .+|+++|+++.+++.|++|+++++    ..+|+++
T Consensus        16 ~t~~eir~~il~~l~--~~~g~~VLDiGcGsG~~s~~lA~~~---~~V~avD~~~~~l~~a~~n~~~~g----l~~~v~~   86 (186)
T d1l3ia_          16 PTAMEVRCLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHG----LGDNVTL   86 (186)
T ss_dssp             CCCHHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTT----CCTTEEE
T ss_pred             CChHHHHHHHHHhcC--CCCCCEEEEEECCeEcccccccccc---eEEEEecCCHHHHHHHHHHHHHcC----CCcceEE
Confidence            345567777888886  8899999999999999999998763   479999999999999999999976    4569999


Q ss_pred             EEccCCCCCCCCCCccEEEecCCCCch---HHHHHhhcccCcEEEEEEc
Q psy7829         194 VEADAREGYLPEAPYDVIYYGGCVSEV---PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       194 ~~~d~~~~~~~~~~fD~I~~~~~~~~~---~~~~~~~LkpgG~l~~~~~  239 (511)
                      +++|+.+.+.....||.|+++....++   .+.+.+.|||||++++...
T Consensus        87 ~~gda~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~  135 (186)
T d1l3ia_          87 MEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAI  135 (186)
T ss_dssp             EESCHHHHHTTSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EECchhhcccccCCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEee
Confidence            999987655555789999999877654   4788999999999988653

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.64  E-value=9.5e-16  Score=141.90  Aligned_cols=125  Identities=26%  Similarity=0.339  Sum_probs=107.3

Q ss_pred             cCCCcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCC
Q psy7829         108 LGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD  187 (511)
Q Consensus       108 ~~~~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~  187 (511)
                      .....++..|.-.+.++..+.  ++||.+|||+|||+|+++..+|+.+++.++|+++|+++++++.|+++++..+    .
T Consensus        80 ~~r~~qiiypkd~~~Ii~~l~--i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g----~  153 (266)
T d1o54a_          80 MKRRTQIVYPKDSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG----L  153 (266)
T ss_dssp             CCC-CCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT----C
T ss_pred             ccCCccccchHHHHHHHHhhC--CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc----c
Confidence            334567778888899999998  9999999999999999999999999899999999999999999999999875    3


Q ss_pred             CCCeEEEEccCCCCCCCCCCccEEEecCCCC-chHHHHHhhcccCcEEEEEEc
Q psy7829         188 SGRVRIVEADAREGYLPEAPYDVIYYGGCVS-EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       188 ~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~-~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      .+++.+...|....+. ...||.|+.+.+-+ .+++++.+.|||||++++.+.
T Consensus       154 ~~~v~~~~~d~~~~~~-~~~~D~V~~d~p~p~~~l~~~~~~LKpGG~lv~~~P  205 (266)
T d1o54a_         154 IERVTIKVRDISEGFD-EKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCP  205 (266)
T ss_dssp             GGGEEEECCCGGGCCS-CCSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred             ccCcEEEecccccccc-ccceeeeEecCCCHHHHHHHHHhhcCCCCEEEEEeC
Confidence            5689999999866554 37799999887664 466999999999999998654

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.64  E-value=6.4e-16  Score=145.95  Aligned_cols=101  Identities=18%  Similarity=0.160  Sum_probs=89.1

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ++++.+|||||||+|.++..+++..  ..+|+|+|+|+.+++.|+++....|    ..++++|+++|+.+.+.++++||+
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~g----l~~~v~~~~~d~~~l~~~~~sfD~  138 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAG----LADNITVKYGSFLEIPCEDNSYDF  138 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHT----CTTTEEEEECCTTSCSSCTTCEEE
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhccccccc----ccccccccccccccccccccccch
Confidence            6789999999999999999999986  3589999999999999999998875    456899999999886656689999


Q ss_pred             EEecCCCCchH------HHHHhhcccCcEEEEE
Q psy7829         211 IYYGGCVSEVP------SRVLNQLKKGGRILAP  237 (511)
Q Consensus       211 I~~~~~~~~~~------~~~~~~LkpgG~l~~~  237 (511)
                      |++..++++++      +++.++|||||++++.
T Consensus       139 V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~  171 (282)
T d2o57a1         139 IWSQDAFLHSPDKLKVFQECARVLKPRGVMAIT  171 (282)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhccchhhhccCHHHHHHHHHHhcCCCcEEEEE
Confidence            99998887654      7899999999999885

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.2e-15  Score=144.89  Aligned_cols=136  Identities=18%  Similarity=0.216  Sum_probs=108.4

Q ss_pred             CCcccccCCCcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhcc
Q psy7829         102 QDVSASLGYAGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKG  181 (511)
Q Consensus       102 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~  181 (511)
                      .+.........++..|.-.+.++..+.  ++||.+|||+|||+|+++..||+.++++++|+++|+++++++.|++|++..
T Consensus        69 ~d~~~~~~r~tqiiypkD~~~Il~~l~--i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~  146 (324)
T d2b25a1          69 EDYVVLMKRGTAITFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHW  146 (324)
T ss_dssp             HHHHHHSCCSSCCCCHHHHHHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred             HHHhhccCCCCcccccccHHHHHHHhC--CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHh
Confidence            333334455777888989999999998  999999999999999999999999999999999999999999999998864


Q ss_pred             CCC------cCCCCCeEEEEccCCCCCC--CCCCccEEEecCCCCc-hHHHHHhhcccCcEEEEEEc
Q psy7829         182 NKD------LLDSGRVRIVEADAREGYL--PEAPYDVIYYGGCVSE-VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       182 ~~~------~~~~~~v~~~~~d~~~~~~--~~~~fD~I~~~~~~~~-~~~~~~~~LkpgG~l~~~~~  239 (511)
                      +..      .-..+|+++.++|+.....  ....||.|+.+.+-++ .+.++.+.|||||+|++.+.
T Consensus       147 ~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~LD~p~P~~~l~~~~~~LKpGG~lv~~~P  213 (324)
T d2b25a1         147 RDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVV  213 (324)
T ss_dssp             HHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred             hhhhhhhhhhccccceeEEecchhhcccccCCCCcceEeecCcCHHHHHHHHHHhccCCCEEEEEeC
Confidence            210      0135689999999875332  3467999999866544 66899999999999998654

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.63  E-value=1e-15  Score=139.51  Aligned_cols=108  Identities=19%  Similarity=0.266  Sum_probs=90.0

Q ss_pred             HHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC
Q psy7829         123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY  202 (511)
Q Consensus       123 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  202 (511)
                      +...+...++++.+|||||||+|.++..+++.   ..+|+|+|+|+.|++.|++++...      ..++.++++|+.+..
T Consensus        27 ~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~------~~~~~~~~~d~~~l~   97 (226)
T d1ve3a1          27 LEPLLMKYMKKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSR------ESNVEFIVGDARKLS   97 (226)
T ss_dssp             HHHHHHHSCCSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHT------TCCCEEEECCTTSCC
T ss_pred             HHHHHHHhcCCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhccc------ccccccccccccccc
Confidence            44445456788899999999999999999985   347999999999999999998774      346789999998766


Q ss_pred             CCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEEEc
Q psy7829         203 LPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       203 ~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~~~  239 (511)
                      .+.++||+|++..+++++        ++++.++|||||++++.+.
T Consensus        98 ~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~  142 (226)
T d1ve3a1          98 FEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT  142 (226)
T ss_dssp             SCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence            667899999999998765        2678999999999988654

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.58  E-value=5.6e-15  Score=134.53  Aligned_cols=113  Identities=17%  Similarity=0.219  Sum_probs=91.0

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVG-PTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD  197 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  197 (511)
                      +...+...+..+.+++.+|||+|||+|..+..+++... +..+|+|+|+|+.|++.|+++++..+    ...++++..+|
T Consensus        25 ~~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~----~~~~~~~~~~d  100 (225)
T d1im8a_          25 IITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH----SEIPVEILCND  100 (225)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSC----CSSCEEEECSC
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhc----ccchhhhccch
Confidence            44445555555678999999999999999999998653 67899999999999999999988754    34578888888


Q ss_pred             CCCCCCCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEE
Q psy7829         198 AREGYLPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       198 ~~~~~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~  237 (511)
                      ..+..  ...+|+|++...++++        ++++++.|||||.+++.
T Consensus       101 ~~~~~--~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~  146 (225)
T d1im8a_         101 IRHVE--IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLS  146 (225)
T ss_dssp             TTTCC--CCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhccc--cccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecc
Confidence            76532  3678999998777554        48899999999999984

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.57  E-value=7.6e-15  Score=130.23  Aligned_cols=111  Identities=24%  Similarity=0.276  Sum_probs=90.7

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829         121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE  200 (511)
Q Consensus       121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  200 (511)
                      ..+++.+.  ..++.+|||+|||+|.++..+++.. +  +|+++|+|+.+++.|+++++.++   +...++++..+|..+
T Consensus        42 ~lLi~~l~--~~~~~~VLDiGcG~G~~~~~la~~~-~--~v~~iD~s~~~i~~a~~n~~~~~---l~~~~i~~~~~d~~~  113 (194)
T d1dusa_          42 KILVENVV--VDKDDDILDLGCGYGVIGIALADEV-K--STTMADINRRAIKLAKENIKLNN---LDNYDIRVVHSDLYE  113 (194)
T ss_dssp             HHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGGS-S--EEEEEESCHHHHHHHHHHHHHTT---CTTSCEEEEECSTTT
T ss_pred             HHHHHhCC--cCCCCeEEEEeecCChhHHHHHhhc-c--ccceeeeccccchhHHHHHHHhC---CccceEEEEEcchhh
Confidence            34566664  6789999999999999999998864 4  69999999999999999998875   234579999999987


Q ss_pred             CCCCCCCccEEEecCCCCc-------hHHHHHhhcccCcEEEEEEcc
Q psy7829         201 GYLPEAPYDVIYYGGCVSE-------VPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       201 ~~~~~~~fD~I~~~~~~~~-------~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      .+ .+++||+|+++.+++.       +.+.+.+.|||||.+++.+..
T Consensus       114 ~~-~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  159 (194)
T d1dusa_         114 NV-KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT  159 (194)
T ss_dssp             TC-TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             hh-ccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEeC
Confidence            44 4578999999988754       246788999999999886553

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.56  E-value=1.7e-14  Score=135.13  Aligned_cols=110  Identities=20%  Similarity=0.190  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc
Q psy7829         118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD  197 (511)
Q Consensus       118 ~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  197 (511)
                      .....+++.+.  +++|.+|||||||+|.++..+|+..+  ++|+|+++|++.++.+++++...|    ...++++...|
T Consensus        48 ~k~~~~~~~l~--l~~G~~VLDiGCG~G~~~~~~a~~~g--~~v~git~s~~q~~~a~~~~~~~~----l~~~v~~~~~d  119 (291)
T d1kpia_          48 AKRKLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVD----SPRRKEVRIQG  119 (291)
T ss_dssp             HHHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHSC----CSSCEEEEECC
T ss_pred             HHHHHHHHhcC--CCCCCEEEEecCcchHHHHHHHHhcC--cceeeccchHHHHHHHHHHHHhhc----cchhhhhhhhc
Confidence            35556666665  88999999999999999999999884  589999999999999999998876    45678998888


Q ss_pred             CCCCCCCCCCccEEEecCCCCch---------------HHHHHhhcccCcEEEEEE
Q psy7829         198 AREGYLPEAPYDVIYYGGCVSEV---------------PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       198 ~~~~~~~~~~fD~I~~~~~~~~~---------------~~~~~~~LkpgG~l~~~~  238 (511)
                      ...   .+++||.|++..+++++               .+++.++|||||++++..
T Consensus       120 ~~~---~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         120 WEE---FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  172 (291)
T ss_dssp             GGG---CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             ccc---cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence            643   34789999999888764               467999999999999853

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.56  E-value=2.4e-15  Score=138.10  Aligned_cols=109  Identities=30%  Similarity=0.453  Sum_probs=88.8

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      +...+++.+....++|.+|||+|||+|.+++.+++. +  .+|+|+|+|+.+++.|++|++.++.      +++++++|.
T Consensus       106 TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~-g--~~V~gvDis~~av~~A~~na~~n~~------~~~~~~~d~  176 (254)
T d2nxca1         106 TTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL-G--GKALGVDIDPMVLPQAEANAKRNGV------RPRFLEGSL  176 (254)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCGGGHHHHHHHHHHTTC------CCEEEESCH
T ss_pred             hhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhc-C--CEEEEEECChHHHHHHHHHHHHcCC------ceeEEeccc
Confidence            456677777777889999999999999999988775 3  4799999999999999999998752      567889987


Q ss_pred             CCCCCCCCCccEEEecCCCCc---hHHHHHhhcccCcEEEEE
Q psy7829         199 REGYLPEAPYDVIYYGGCVSE---VPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       199 ~~~~~~~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~l~~~  237 (511)
                      .... +.++||+|+++...+.   +.+.+.+.|||||+++++
T Consensus       177 ~~~~-~~~~fD~V~ani~~~~l~~l~~~~~~~LkpGG~lilS  217 (254)
T d2nxca1         177 EAAL-PFGPFDLLVANLYAELHAALAPRYREALVPGGRALLT  217 (254)
T ss_dssp             HHHG-GGCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccc-cccccchhhhccccccHHHHHHHHHHhcCCCcEEEEE
Confidence            6533 3478999999855443   347889999999999985

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.55  E-value=1.4e-14  Score=135.50  Aligned_cols=108  Identities=17%  Similarity=0.184  Sum_probs=90.0

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      ....+++.+.  +++|.+|||||||+|.++..+++..+  .+|+|+|+|+++++.|++++++.+    ...++.+...|.
T Consensus        40 k~~~~~~~l~--l~~g~~VLDiGCG~G~~a~~~a~~~g--~~v~gi~ls~~q~~~a~~~~~~~~----l~~~~~~~~~d~  111 (280)
T d2fk8a1          40 KVDLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASID----TNRSRQVLLQGW  111 (280)
T ss_dssp             HHHHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSC----CSSCEEEEESCG
T ss_pred             HHHHHHHHcC--CCCCCEEEEecCCchHHHHHHHHhCc--eeEEEecchHHHHHHHHHHHHhhc----cccchhhhhhhh
Confidence            3455555554  78999999999999999999998873  589999999999999999998876    355788888886


Q ss_pred             CCCCCCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEE
Q psy7829         199 REGYLPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       199 ~~~~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~  237 (511)
                      .+.   .++||.|++..+++++        .+++.++|||||++++.
T Consensus       112 ~~~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~  155 (280)
T d2fk8a1         112 EDF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQ  155 (280)
T ss_dssp             GGC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEE
T ss_pred             hhh---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEE
Confidence            542   3789999999988765        37789999999999984

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.54  E-value=1.3e-14  Score=133.24  Aligned_cols=113  Identities=24%  Similarity=0.317  Sum_probs=91.4

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc------cccccccc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS------TNHIDLIA  427 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~------~~~v~~i~  427 (511)
                      +..|++++.++..  ++++||.+|||+|||+|++|+.||+.++|+|+|+++|+++++++.|++|+.      ..|+.++.
T Consensus        79 iiypkD~s~Ii~~--l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~  156 (264)
T d1i9ga_          79 VIYPKDAAQIVHE--GDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVV  156 (264)
T ss_dssp             CCCHHHHHHHHHH--TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEEC
T ss_pred             ccchHHHHHHHHH--hCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEe
Confidence            5678999999998  999999999999999999999999999999999999999999998888764      46788888


Q ss_pred             cccccc--ccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         428 NETIEI--IPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       428 ~d~~~~--l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +|..+.  .+..+|.++.+++..+.          ....+.+.|+|+|+++.+
T Consensus       157 ~d~~~~~~~~~~fDaV~ldlp~P~~----------~l~~~~~~LkpGG~lv~~  199 (264)
T d1i9ga_         157 SDLADSELPDGSVDRAVLDMLAPWE----------VLDAVSRLLVAGGVLMVY  199 (264)
T ss_dssp             SCGGGCCCCTTCEEEEEEESSCGGG----------GHHHHHHHEEEEEEEEEE
T ss_pred             cccccccccCCCcceEEEecCCHHH----------HHHHHHhccCCCCEEEEE
Confidence            875542  34556665544433332          336788999999999887

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.54  E-value=2.2e-14  Score=133.97  Aligned_cols=108  Identities=20%  Similarity=0.193  Sum_probs=92.2

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      ....+++.+.  +++|.+|||||||+|..++.+|+..+  ++|+|+++|+..++.|++++.+.|    ..+++++..+|.
T Consensus        50 k~~~~~~~l~--l~~G~~VLDiGCG~G~~a~~~a~~~g--~~v~git~s~~Q~~~a~~~~~~~g----~~~~v~~~~~d~  121 (285)
T d1kpga_          50 KIDLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSE----NLRSKRVLLAGW  121 (285)
T ss_dssp             HHHHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCC----CCSCEEEEESCG
T ss_pred             HHHHHHHHcC--CCCCCEEEEecCcchHHHHHHHhcCC--cceEEEeccHHHHHHHHHHHHhhh----hhhhhHHHHhhh
Confidence            4455666665  88999999999999999999999983  699999999999999999988876    567899999998


Q ss_pred             CCCCCCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEE
Q psy7829         199 REGYLPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       199 ~~~~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~  237 (511)
                      ...   +++||.|++..+++++        .+++.++|||||++++-
T Consensus       122 ~~~---~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~  165 (285)
T d1kpga_         122 EQF---DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLH  165 (285)
T ss_dssp             GGC---CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEE
T ss_pred             hcc---cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEE
Confidence            653   3689999999888765        37899999999999974

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.54  E-value=1.9e-14  Score=133.33  Aligned_cols=104  Identities=19%  Similarity=0.212  Sum_probs=86.3

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCc
Q psy7829         130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPY  208 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~f  208 (511)
                      ..+++.+|||+|||+|..+..+++..  ..+|+|+|+|+.|++.|+++....+    ...++.|.++|+..... ..++|
T Consensus        21 ~~~~~~~VLDlGCG~G~~~~~~~~~~--~~~v~GiD~S~~~l~~A~~r~~~~~----~~~~v~f~~~D~~~~~~~~~~~f   94 (252)
T d1ri5a_          21 YTKRGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARNMK----RRFKVFFRAQDSYGRHMDLGKEF   94 (252)
T ss_dssp             HCCTTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHTSC----CSSEEEEEESCTTTSCCCCSSCE
T ss_pred             hCCCcCEEEEecccCcHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHhcC----CCcceEEEEcchhhhcccccccc
Confidence            46789999999999999999998863  3579999999999999999987754    34579999999875433 45789


Q ss_pred             cEEEecCCCCch----------HHHHHhhcccCcEEEEEEc
Q psy7829         209 DVIYYGGCVSEV----------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       209 D~I~~~~~~~~~----------~~~~~~~LkpgG~l~~~~~  239 (511)
                      |+|++..+++++          ..++.+.|||||++++.+.
T Consensus        95 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~  135 (252)
T d1ri5a_          95 DVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP  135 (252)
T ss_dssp             EEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             eEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence            999999888765          2678899999999998654

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=2.9e-14  Score=132.97  Aligned_cols=101  Identities=21%  Similarity=0.283  Sum_probs=87.1

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ..++.+|||+|||+|.++..+++.. ++.+++|+|+|+.+++.|+++.          +++++.++|+.+.+.++++||+
T Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~~----------~~~~~~~~d~~~l~~~~~sfD~  150 (268)
T d1p91a_          82 DDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY----------PQVTFCVASSHRLPFSDTSMDA  150 (268)
T ss_dssp             CTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC----------TTSEEEECCTTSCSBCTTCEEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhccc----------ccccceeeehhhccCCCCCEEE
Confidence            3577899999999999999999986 7889999999999999998763          3689999999887666789999


Q ss_pred             EEecCCCCchHHHHHhhcccCcEEEEEEccCCC
Q psy7829         211 IYYGGCVSEVPSRVLNQLKKGGRILAPIGPMDD  243 (511)
Q Consensus       211 I~~~~~~~~~~~~~~~~LkpgG~l~~~~~~~~~  243 (511)
                      |++....+++ +++.++|||||.+++.+.....
T Consensus       151 v~~~~~~~~~-~e~~rvLkpgG~l~~~~p~~~~  182 (268)
T d1p91a_         151 IIRIYAPCKA-EELARVVKPGGWVITATPGPRH  182 (268)
T ss_dssp             EEEESCCCCH-HHHHHHEEEEEEEEEEEECTTT
T ss_pred             EeecCCHHHH-HHHHHHhCCCcEEEEEeeCCcc
Confidence            9998877664 7899999999999998765443

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.52  E-value=1.5e-14  Score=133.52  Aligned_cols=111  Identities=18%  Similarity=0.148  Sum_probs=87.1

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      ....+.+.+.....++.+|||+|||+|.++..+++.. .  +|+|+|+|+.|++.|++++...+      .+++++++|+
T Consensus        23 ~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g-~--~v~GvD~S~~ml~~A~~~~~~~~------~~v~~~~~d~   93 (246)
T d1y8ca_          23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF-K--NTWAVDLSQEMLSEAENKFRSQG------LKPRLACQDI   93 (246)
T ss_dssp             HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS-S--EEEEECSCHHHHHHHHHHHHHTT------CCCEEECCCG
T ss_pred             HHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhC-C--ccEeeccchhhhhhccccccccC------ccceeeccch
Confidence            4445556665444567899999999999999999874 3  69999999999999999987743      3799999999


Q ss_pred             CCCCCCCCCccEEEec-CCCCc---------hHHHHHhhcccCcEEEEEEc
Q psy7829         199 REGYLPEAPYDVIYYG-GCVSE---------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       199 ~~~~~~~~~fD~I~~~-~~~~~---------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      .+... .++||+|+|. .++.+         +++++.+.|||||.+++.+.
T Consensus        94 ~~~~~-~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  143 (246)
T d1y8ca_          94 SNLNI-NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN  143 (246)
T ss_dssp             GGCCC-SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hhhcc-cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence            86443 4789999975 33322         34789999999999998654

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.52  E-value=3.8e-14  Score=126.16  Aligned_cols=98  Identities=18%  Similarity=0.161  Sum_probs=83.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY  212 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~  212 (511)
                      ++.+|||||||+|..+..++++.   .+|+|+|+|+.+++.++++....     +.+++++...|+....+ +++||+|+
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~g---~~v~gvD~s~~~l~~a~~~~~~~-----~~~~~~~~~~d~~~~~~-~~~fD~I~  100 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAANG---YDVTAWDKNPASMANLERIKAAE-----GLDNLQTDLVDLNTLTF-DGEYDFIL  100 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHT-----TCTTEEEEECCTTTCCC-CCCEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHHh---hhhccccCcHHHHHHHHHHhhhc-----cccchhhhheecccccc-cccccEEE
Confidence            44599999999999999999874   37999999999999999998875     35689999999887544 47899999


Q ss_pred             ecCCCCchH--------HHHHhhcccCcEEEEEEc
Q psy7829         213 YGGCVSEVP--------SRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       213 ~~~~~~~~~--------~~~~~~LkpgG~l~~~~~  239 (511)
                      +..++++++        +++.++|+|||++++...
T Consensus       101 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1         101 STVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             EESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            998887653        678899999999998654

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.52  E-value=2.3e-14  Score=134.72  Aligned_cols=101  Identities=21%  Similarity=0.326  Sum_probs=86.8

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      +.++.+|||+|||+|..+..+++..++..+|+|+|+|+.+++.|++++...+      .+++|.++|+.+... .++||+
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~------~~~~f~~~d~~~~~~-~~~fD~   97 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP------YDSEFLEGDATEIEL-NDKYDI   97 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS------SEEEEEESCTTTCCC-SSCEEE
T ss_pred             cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc------ccccccccccccccc-cCCceE
Confidence            4578899999999999999999987556899999999999999999988743      379999999987443 367999


Q ss_pred             EEecCCCCch------HHHHHhhcccCcEEEEEE
Q psy7829         211 IYYGGCVSEV------PSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       211 I~~~~~~~~~------~~~~~~~LkpgG~l~~~~  238 (511)
                      |++..+++++      ++++.+.|||||.+++..
T Consensus        98 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~  131 (281)
T d2gh1a1          98 AICHAFLLHMTTPETMLQKMIHSVKKGGKIICFE  131 (281)
T ss_dssp             EEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence            9999988765      378999999999998754

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.1e-14  Score=132.25  Aligned_cols=102  Identities=16%  Similarity=0.138  Sum_probs=85.5

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ..++.+|||||||+|..+..++...  ..+|+|+|+|+.|++.|++++...+     .++++|+++|+.+...+.++||+
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~ak~~~~~~~-----~~~~~f~~~d~~~~~~~~~~fD~  130 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEG-----KRVRNYFCCGLQDFTPEPDSYDV  130 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGG-----GGEEEEEECCGGGCCCCSSCEEE
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhc--CCEEEEeecCHHHhhcccccccccc-----ccccccccccccccccccccccc
Confidence            3467899999999999999887654  2479999999999999999987753     45789999999876555689999


Q ss_pred             EEecCCCCchH--------HHHHhhcccCcEEEEEEc
Q psy7829         211 IYYGGCVSEVP--------SRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       211 I~~~~~~~~~~--------~~~~~~LkpgG~l~~~~~  239 (511)
                      |++..++++++        +++.+.|||||.+++...
T Consensus       131 I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~  167 (222)
T d2ex4a1         131 IWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDN  167 (222)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccccccchhhhhhhHHHHHHHhcCCcceEEEEEc
Confidence            99999887653        678999999999998644

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.52  E-value=7.6e-15  Score=133.91  Aligned_cols=133  Identities=18%  Similarity=0.245  Sum_probs=90.9

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----cccccccccc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANE  429 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d  429 (511)
                      +..|++++.++..  ++++||++|||+|||+|++|..+|+.++|+++|+++|+++++++.+++|+.    ..|+++..+|
T Consensus        68 iiypkD~~~Ii~~--l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~D  145 (250)
T d1yb2a1          68 IISEIDASYIIMR--CGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSD  145 (250)
T ss_dssp             ---------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSC
T ss_pred             ccCHHHHHHHHHH--cCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEee
Confidence            4456778888887  999999999999999999999999999899999999999999998888764    4678888888


Q ss_pred             cccccc-ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCCCceE
Q psy7829         430 TIEIIP-HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHID  498 (511)
Q Consensus       430 ~~~~l~-~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~~~i~  498 (511)
                      ..+.++ ..+|.++.++...+          .....+.+.|+|||.++.+   -+-++...+.+++.|+..++
T Consensus       146 i~~~~~~~~fD~V~ld~p~p~----------~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf~~i~  208 (250)
T d1yb2a1         146 IADFISDQMYDAVIADIPDPW----------NHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLE  208 (250)
T ss_dssp             TTTCCCSCCEEEEEECCSCGG----------GSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEE
T ss_pred             eecccccceeeeeeecCCchH----------HHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCCceeE
Confidence            766543 44665554443333          2347788899999999876   23344555666666663333

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.50  E-value=6.1e-14  Score=125.12  Aligned_cols=101  Identities=22%  Similarity=0.253  Sum_probs=82.5

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCC---CC
Q psy7829         130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLP---EA  206 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~  206 (511)
                      .++||.+|||+|||+|+.+..+++.+ +.++|+|+|+|+.+++.++++++..       +|+.++.+|+......   ..
T Consensus        53 ~lkpg~~VLDlGcG~G~~~~~la~~v-~~g~V~gvDis~~~i~~a~~~a~~~-------~ni~~i~~d~~~~~~~~~~~~  124 (209)
T d1nt2a_          53 KLRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRER-------NNIIPLLFDASKPWKYSGIVE  124 (209)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHT-TTSEEEEECCCHHHHHHHHHHHHHC-------SSEEEECSCTTCGGGTTTTCC
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHhc-cCCeEEEEeCCHHHHHHHHHHhhcc-------CCceEEEeeccCccccccccc
Confidence            47899999999999999999999998 6789999999999999999998773       4899999998753222   24


Q ss_pred             CccEEEecCCCCc----hHHHHHhhcccCcEEEEEE
Q psy7829         207 PYDVIYYGGCVSE----VPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       207 ~fD~I~~~~~~~~----~~~~~~~~LkpgG~l~~~~  238 (511)
                      .+|+|+.+...+.    +..++.+.|||||.+++.+
T Consensus       125 ~vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         125 KVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             CEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEEecccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            5677776644433    3478899999999999864

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.49  E-value=8e-14  Score=125.49  Aligned_cols=115  Identities=23%  Similarity=0.272  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHhh-cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829         118 NQIADAAENLKL-HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA  196 (511)
Q Consensus       118 ~~~~~~~~~l~~-~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  196 (511)
                      .+.+.++..+.. .++||.+|||+|||+|..+.++++.+++.++|+++|+++.+++.++++++..       .++..+..
T Consensus        57 Klaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~-------~~~~~i~~  129 (227)
T d1g8aa_          57 KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-------RNIVPILG  129 (227)
T ss_dssp             HHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-------TTEEEEEC
T ss_pred             HHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc-------CCceEEEE
Confidence            355555544432 4789999999999999999999999999999999999999999999998763       47888888


Q ss_pred             cCCCCC---CCCCCccEEEecCCCCc----hHHHHHhhcccCcEEEEEEc
Q psy7829         197 DAREGY---LPEAPYDVIYYGGCVSE----VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       197 d~~~~~---~~~~~fD~I~~~~~~~~----~~~~~~~~LkpgG~l~~~~~  239 (511)
                      |.....   .....+|+|+++.+.+.    +..++.+.|||||.+++.+.
T Consensus       130 d~~~~~~~~~~~~~vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~~k  179 (227)
T d1g8aa_         130 DATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVK  179 (227)
T ss_dssp             CTTCGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ECCCcccccccccceEEEEEEccccchHHHHHHHHHHhcccCCeEEEEEE
Confidence            876421   22367899998866543    35788999999999998653

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.49  E-value=6.7e-14  Score=129.47  Aligned_cols=99  Identities=22%  Similarity=0.294  Sum_probs=81.5

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ..++.+|||+|||+|..+..+++..   .+|+|+|+|+.|++.|++++...+      .+++++++|+.+...+ ++||+
T Consensus        39 ~~~~~~iLDiGcGtG~~~~~l~~~~---~~v~gvD~s~~mi~~a~~~~~~~~------~~i~~~~~d~~~l~~~-~~fD~  108 (251)
T d1wzna1          39 KREVRRVLDLACGTGIPTLELAERG---YEVVGLDLHEEMLRVARRKAKERN------LKIEFLQGDVLEIAFK-NEFDA  108 (251)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT------CCCEEEESCGGGCCCC-SCEEE
T ss_pred             CCCCCEEEEeCCCCCccchhhcccc---eEEEEEeecccccccccccccccc------ccchheehhhhhcccc-cccch
Confidence            4567799999999999999999864   379999999999999999988743      3799999999875444 68999


Q ss_pred             EEecC-CCCc--------hHHHHHhhcccCcEEEEEEc
Q psy7829         211 IYYGG-CVSE--------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       211 I~~~~-~~~~--------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      |++.. ++.+        +++++.++|||||++++.+.
T Consensus       109 I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~  146 (251)
T d1wzna1         109 VTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP  146 (251)
T ss_dssp             EEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence            99863 3333        34789999999999998654

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=7.5e-15  Score=132.61  Aligned_cols=113  Identities=27%  Similarity=0.460  Sum_probs=87.2

Q ss_pred             CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc--------ccccccc
Q psy7829         355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS--------TNHIDLI  426 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~--------~~~v~~i  426 (511)
                      ..|..++++++.+...+++|++|||||||+||.|..+|+.+++.++|+++|+++++++.+++++.        ..++.++
T Consensus        58 s~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~  137 (224)
T d1i1na_          58 SAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLV  137 (224)
T ss_dssp             CCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEE
T ss_pred             hhhHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEE
Confidence            46789999999844488999999999999999999999999888999999999999998877765        3456667


Q ss_pred             ccccccccc--ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         427 ANETIEIIP--HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       427 ~~d~~~~l~--~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .+|.....+  ..||.++           +.++.-.+...+.+.|+|||+++..
T Consensus       138 ~gD~~~~~~~~~~fD~I~-----------~~~~~~~ip~~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         138 VGDGRMGYAEEAPYDAIH-----------VGAAAPVVPQALIDQLKPGGRLILP  180 (224)
T ss_dssp             ESCGGGCCGGGCCEEEEE-----------ECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             Eeecccccchhhhhhhhh-----------hhcchhhcCHHHHhhcCCCcEEEEE
Confidence            777554333  2344332           3344444557788999999999874

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.47  E-value=4.4e-14  Score=130.19  Aligned_cols=102  Identities=25%  Similarity=0.326  Sum_probs=80.6

Q ss_pred             HHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC
Q psy7829         124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL  203 (511)
Q Consensus       124 ~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  203 (511)
                      ...+...++++.+|||+|||+|..+..+++..   .+|+|+|+|+.|++.|+++...           .++.+|+.+...
T Consensus        33 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~l~~a~~~~~~-----------~~~~~~~~~l~~   98 (246)
T d2avna1          33 GSFLEEYLKNPCRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLEVAREKGVK-----------NVVEAKAEDLPF   98 (246)
T ss_dssp             HHHHHHHCCSCCEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHHTCS-----------CEEECCTTSCCS
T ss_pred             HHHHHHhcCCCCEEEEECCCCchhcccccccc---eEEEEeeccccccccccccccc-----------cccccccccccc
Confidence            33444457788999999999999999998863   4799999999999999987322           356788877555


Q ss_pred             CCCCccEEEecC-CCCch------HHHHHhhcccCcEEEEEEc
Q psy7829         204 PEAPYDVIYYGG-CVSEV------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       204 ~~~~fD~I~~~~-~~~~~------~~~~~~~LkpgG~l~~~~~  239 (511)
                      ++++||+|++.. +++++      ++++.++|||||.+++.+.
T Consensus        99 ~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1          99 PSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             CTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEEC
Confidence            568999999854 44443      3789999999999999764

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.47  E-value=7e-14  Score=129.16  Aligned_cols=135  Identities=15%  Similarity=0.262  Sum_probs=98.8

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----cccccccccc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANE  429 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d  429 (511)
                      +..|++++.++..  +++++|++|||+|||+|+++..+|+.++|+++|+++|+++++++.+++|+.    ..++.+..+|
T Consensus        86 iiypkd~~~Ii~~--l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d  163 (266)
T d1o54a_          86 IVYPKDSSFIAMM--LDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRD  163 (266)
T ss_dssp             CCCHHHHHHHHHH--TTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCC
T ss_pred             ccchHHHHHHHHh--hCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecc
Confidence            4677999999998  999999999999999999999999999899999999999999998887765    2455665555


Q ss_pred             cccccc-ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCCCceEEE
Q psy7829         430 TIEIIP-HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANISTNHIDLI  500 (511)
Q Consensus       430 ~~~~l~-~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~~~i~~i  500 (511)
                      .....+ ..+|.+         ++|++. +-.....+.+.|+|||+++.+   .+-++...+.+++.|+..++.+
T Consensus       164 ~~~~~~~~~~D~V---------~~d~p~-p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~~i~~~  228 (266)
T d1o54a_         164 ISEGFDEKDVDAL---------FLDVPD-PWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVW  228 (266)
T ss_dssp             GGGCCSCCSEEEE---------EECCSC-GGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEEE
T ss_pred             ccccccccceeee---------EecCCC-HHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCceeEEEE
Confidence            433222 223333         444433 334457888999999999876   3444555566666666444443

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.46  E-value=1.5e-13  Score=126.84  Aligned_cols=100  Identities=18%  Similarity=0.185  Sum_probs=83.6

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ..++.+|||+|||+|.++..++....  .+|+++|+|+.+++.|++++..       .++++|+++|+.+...+.++||+
T Consensus        91 ~~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~  161 (254)
T d1xtpa_          91 GHGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAG-------MPVGKFILASMETATLPPNTYDL  161 (254)
T ss_dssp             TCCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTT-------SSEEEEEESCGGGCCCCSSCEEE
T ss_pred             CCCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhccccc-------cccceeEEccccccccCCCccce
Confidence            34677999999999999998887652  3799999999999999988754       34689999999875555689999


Q ss_pred             EEecCCCCchH--------HHHHhhcccCcEEEEEEc
Q psy7829         211 IYYGGCVSEVP--------SRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       211 I~~~~~~~~~~--------~~~~~~LkpgG~l~~~~~  239 (511)
                      |++..+++++.        +++.+.|||||.+++...
T Consensus       162 I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~  198 (254)
T d1xtpa_         162 IVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEec
Confidence            99999987763        678999999999998543

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.45  E-value=1.5e-13  Score=124.23  Aligned_cols=114  Identities=21%  Similarity=0.217  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHhh-cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829         118 NQIADAAENLKL-HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA  196 (511)
Q Consensus       118 ~~~~~~~~~l~~-~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  196 (511)
                      .+.+.++..+.. .++||.+|||+|||+|+.+..+++.. ++++|+|+|+|+.+++.+++++..       .+++.++.+
T Consensus        58 klaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~-~~g~V~aVDiS~~~i~~a~~~a~~-------~~ni~~i~~  129 (230)
T d1g8sa_          58 KLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAE-------RENIIPILG  129 (230)
T ss_dssp             HHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTT-------CTTEEEEEC
T ss_pred             HHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhh-------hcccceEEE
Confidence            344544444332 36899999999999999999999985 789999999999999999998765       357888999


Q ss_pred             cCCCCCC-CCCCccEEEecCCCCc------hHHHHHhhcccCcEEEEEEc
Q psy7829         197 DAREGYL-PEAPYDVIYYGGCVSE------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       197 d~~~~~~-~~~~fD~I~~~~~~~~------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      |...... ....+|++++...+.+      +..++.+.|||||.+++.+.
T Consensus       130 d~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k  179 (230)
T d1g8sa_         130 DANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIK  179 (230)
T ss_dssp             CTTCGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eeccCcccccccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEee
Confidence            9875332 2345566554444432      24788999999999998653

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.45  E-value=1.4e-13  Score=125.11  Aligned_cols=106  Identities=18%  Similarity=0.235  Sum_probs=83.9

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC
Q psy7829         121 ADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE  200 (511)
Q Consensus       121 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  200 (511)
                      ..++..+... .++.+|||||||+|.++..+++..   .+|+|+|+|+++++.|+++..         +++.++.+|+.+
T Consensus         9 ~~~~~~~~~~-~~~~~VLDiGcG~G~~~~~l~~~g---~~v~giD~s~~~i~~a~~~~~---------~~~~~~~~~~~~   75 (225)
T d2p7ia1           9 PFMVRAFTPF-FRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLK---------DGITYIHSRFED   75 (225)
T ss_dssp             HHHHHHHGGG-CCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSC---------SCEEEEESCGGG
T ss_pred             HHHHHHhhhh-CCCCcEEEEeCCCcHHHHHHHHcC---CeEEEEeCcHHHhhhhhcccc---------cccccccccccc
Confidence            3444555433 356689999999999999998764   359999999999999998743         379999999876


Q ss_pred             CCCCCCCccEEEecCCCCchH------HHHH-hhcccCcEEEEEEcc
Q psy7829         201 GYLPEAPYDVIYYGGCVSEVP------SRVL-NQLKKGGRILAPIGP  240 (511)
Q Consensus       201 ~~~~~~~fD~I~~~~~~~~~~------~~~~-~~LkpgG~l~~~~~~  240 (511)
                      ... +++||+|++..+++++.      .++. ++|||||.+++.+..
T Consensus        76 ~~~-~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn  121 (225)
T d2p7ia1          76 AQL-PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPN  121 (225)
T ss_dssp             CCC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             ccc-ccccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEEeCC
Confidence            443 47899999999998764      5666 789999999997653

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.45  E-value=2.4e-14  Score=127.56  Aligned_cols=111  Identities=20%  Similarity=0.343  Sum_probs=89.6

Q ss_pred             CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---ccccccccccccc
Q psy7829         355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETI  431 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~  431 (511)
                      ..|..++++++.  +.++++++||||||||||.|..+|+.++  ++|+++|++++++..+++++   +..|+.++++|..
T Consensus        62 s~P~~~a~ml~~--L~l~~g~~VLeIGsGsGY~taila~l~g--~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~  137 (215)
T d1jg1a_          62 SAPHMVAIMLEI--ANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS  137 (215)
T ss_dssp             CCHHHHHHHHHH--HTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG
T ss_pred             hhhhhHHHHHHh--hccCccceEEEecCCCChhHHHHHHhhC--ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccc
Confidence            467899999998  8999999999999999999999999985  78999999988777766554   5788999999876


Q ss_pred             ccccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         432 EIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       432 ~~l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ...+..        .+-++|+ ++|+.-.+...+.+.|+|||++++.
T Consensus       138 ~g~~~~--------~pfD~Ii-v~~a~~~ip~~l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         138 KGFPPK--------APYDVII-VTAGAPKIPEPLIEQLKIGGKLIIP  175 (215)
T ss_dssp             GCCGGG--------CCEEEEE-ECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             cCCccc--------CcceeEE-eecccccCCHHHHHhcCCCCEEEEE
Confidence            644321        2333455 6666667778888999999999875

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.45  E-value=7.8e-14  Score=124.05  Aligned_cols=117  Identities=14%  Similarity=0.051  Sum_probs=88.3

Q ss_pred             hHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCC-------cCCCC
Q psy7829         117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKD-------LLDSG  189 (511)
Q Consensus       117 p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-------~~~~~  189 (511)
                      |.+.+ .+..|.  ++++.+|||+|||+|..+..||++.   .+|+|+|+|+.|++.|+++++..+..       .....
T Consensus         7 ~~~~~-~~~~l~--~~~~~rvLd~GCG~G~~a~~la~~G---~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~   80 (201)
T d1pjza_           7 KDLQQ-YWSSLN--VVPGARVLVPLCGKSQDMSWLSGQG---YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAP   80 (201)
T ss_dssp             HHHHH-HHHHHC--CCTTCEEEETTTCCSHHHHHHHHHC---CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECS
T ss_pred             HHHHH-HHHHcC--CCCCCEEEEecCcCCHHHHHHHHcC---CceEeecccHHHHHHHHHHhccccchhhhhhhhhcccc
Confidence            44444 345554  7899999999999999999999973   47999999999999999998653210       00124


Q ss_pred             CeEEEEccCCCCCC-CCCCccEEEecCCCCchH--------HHHHhhcccCcEEEEEEc
Q psy7829         190 RVRIVEADAREGYL-PEAPYDVIYYGGCVSEVP--------SRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       190 ~v~~~~~d~~~~~~-~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~l~~~~~  239 (511)
                      +++++++|..+... ....||+|++...++++.        +++.+.|||||.+++...
T Consensus        81 ~~~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~  139 (201)
T d1pjza_          81 GIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITL  139 (201)
T ss_dssp             SSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred             ccceecccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEc
Confidence            56788888876443 236799999988876553        678999999999887543

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=9.4e-14  Score=131.55  Aligned_cols=113  Identities=21%  Similarity=0.301  Sum_probs=87.0

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc--------------
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS--------------  419 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~--------------  419 (511)
                      +..|++++.++..  +++.||++|||+|||+|++|+.||+.++|+|+|+++|+++++++.|++|+.              
T Consensus        81 iiypkD~~~Il~~--l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~  158 (324)
T d2b25a1          81 ITFPKDINMILSM--MDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEW  158 (324)
T ss_dssp             CCCHHHHHHHHHH--HTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCC
T ss_pred             ccccccHHHHHHH--hCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhcc
Confidence            4678999999998  999999999999999999999999999999999999999999998888765              


Q ss_pred             ccccccccccccccc----cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         420 TNHIDLIANETIEII----PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       420 ~~~v~~i~~d~~~~l----~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..|++++.+|.....    ...+|.+         +||+..-. .....+.+.|+|||.++.+
T Consensus       159 ~~nv~~~~~di~~~~~~~~~~~fD~V---------~LD~p~P~-~~l~~~~~~LKpGG~lv~~  211 (324)
T d2b25a1         159 PDNVDFIHKDISGATEDIKSLTFDAV---------ALDMLNPH-VTLPVFYPHLKHGGVCAVY  211 (324)
T ss_dssp             CCCEEEEESCTTCCC-------EEEE---------EECSSSTT-TTHHHHGGGEEEEEEEEEE
T ss_pred             ccceeEEecchhhcccccCCCCcceE---------eecCcCHH-HHHHHHHHhccCCCEEEEE
Confidence            245677766643322    2234444         44544322 2346778899999999887

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.44  E-value=2.3e-13  Score=125.85  Aligned_cols=106  Identities=25%  Similarity=0.275  Sum_probs=88.6

Q ss_pred             HHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC
Q psy7829         122 DAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG  201 (511)
Q Consensus       122 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  201 (511)
                      .+++.+.  +.+..+|||||||+|..+..+++++ |+.+++++|+ +++++.+++++...+    ..++++++.+|+.+.
T Consensus        71 ~~~~~~d--~~~~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~----~~~rv~~~~~D~~~~  142 (253)
T d1tw3a2          71 APAAAYD--WTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEG----LSDRVDVVEGDFFEP  142 (253)
T ss_dssp             HHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTT----CTTTEEEEECCTTSC
T ss_pred             HHHhhcC--CccCCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccC-HHHHHHHHHHHHHhh----cccchhhccccchhh
Confidence            3445554  5677899999999999999999997 8899999998 679999999998865    457899999998764


Q ss_pred             CCCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEE
Q psy7829         202 YLPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       202 ~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~  237 (511)
                      .+  .+||+|++...++++        ++++++.|||||++++.
T Consensus       143 ~~--~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~  184 (253)
T d1tw3a2         143 LP--RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIH  184 (253)
T ss_dssp             CS--SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cc--cchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEE
Confidence            33  579999999888754        47889999999999884

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.44  E-value=1.9e-13  Score=125.80  Aligned_cols=144  Identities=17%  Similarity=0.114  Sum_probs=110.0

Q ss_pred             CccCCCCCCCcccccCCCcccchhHHHHHHHHHHhhc-CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHH
Q psy7829          94 NFANEEPYQDVSASLGYAGVMNAPNQIADAAENLKLH-LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIE  172 (511)
Q Consensus        94 ~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~  172 (511)
                      .......|++..|.+..++.+++|.+...+-..+... ..+..+|+|+|||+|..+..+++.  ++++|+++|+|+.+++
T Consensus        70 YI~g~~~F~~~~f~v~~~vlIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~--~~~~v~a~Dis~~Al~  147 (271)
T d1nv8a_          70 YILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVE  147 (271)
T ss_dssp             HHHTEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHH
T ss_pred             hhcCcEEEeeeEEEEecCccCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhc--ccceeeechhhhhHHH
Confidence            3334457889999999999999998765433333211 124568999999999999998864  6889999999999999


Q ss_pred             HHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCccEEEecCCCC--------------ch-----------H-HHHH
Q psy7829         173 ASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYDVIYYGGCVS--------------EV-----------P-SRVL  225 (511)
Q Consensus       173 ~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I~~~~~~~--------------~~-----------~-~~~~  225 (511)
                      .|++|++.++    ...++.+..+|+.+... ..+.||+|++|+|+-              ..           . +-+.
T Consensus       148 ~A~~Na~~~~----~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~  223 (271)
T d1nv8a_         148 IARKNAERHG----VSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFG  223 (271)
T ss_dssp             HHHHHHHHTT----CTTSEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHH
T ss_pred             HHHHHHHHcC----CCceeEEeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHH
Confidence            9999999976    35578889999876443 237899999998860              00           1 2356


Q ss_pred             hhcccCcEEEEEEccCCC
Q psy7829         226 NQLKKGGRILAPIGPMDD  243 (511)
Q Consensus       226 ~~LkpgG~l~~~~~~~~~  243 (511)
                      +.|+|||.+++.++..+.
T Consensus       224 ~~L~~~G~l~~Eig~~Q~  241 (271)
T d1nv8a_         224 RYDTSGKIVLMEIGEDQV  241 (271)
T ss_dssp             HCCCTTCEEEEECCTTCH
T ss_pred             HhcCCCCEEEEEECHHHH
Confidence            789999999999987654

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.44  E-value=3e-13  Score=119.73  Aligned_cols=102  Identities=18%  Similarity=0.258  Sum_probs=86.2

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC--CCCCCcc
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY--LPEAPYD  209 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD  209 (511)
                      .++..|||||||+|..+..+|+.. |+..++|+|+++.++..|.+++.+.     +.+|+.++++|+....  .+.+++|
T Consensus        28 ~~~PlvLeIGcG~G~~~~~lA~~~-p~~~~iGiD~~~~~i~~a~~~~~~~-----~l~Nv~~~~~Da~~l~~~~~~~~~d  101 (204)
T d2fcaa1          28 NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDS-----EAQNVKLLNIDADTLTDVFEPGEVK  101 (204)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHS-----CCSSEEEECCCGGGHHHHCCTTSCC
T ss_pred             CCCceEEEEEecCcHHHHHHHHhC-CCCcEEEeecchHHHHHHHHHHHHH-----hccCchhcccchhhhhcccCchhhh
Confidence            345689999999999999999996 8999999999999999999999886     4679999999987532  3458899


Q ss_pred             EEEecCCCCc--------------hHHHHHhhcccCcEEEEEEc
Q psy7829         210 VIYYGGCVSE--------------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       210 ~I~~~~~~~~--------------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      .|++..+.++              +++.+.+.|||||.|++..+
T Consensus       102 ~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD  145 (204)
T d2fcaa1         102 RVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD  145 (204)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred             ccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEEC
Confidence            9998877643              45789999999999998653

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.9e-13  Score=122.33  Aligned_cols=119  Identities=17%  Similarity=0.091  Sum_probs=91.5

Q ss_pred             hhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCC-----------
Q psy7829         116 APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKD-----------  184 (511)
Q Consensus       116 ~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-----------  184 (511)
                      .|.+...+...+.  +.++.+|||+|||+|..+..||+..   .+|+|+|+|+.+++.|+++.......           
T Consensus        30 ~~~l~~~~~~~l~--~~~~~rvLd~GCG~G~~a~~LA~~G---~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~  104 (229)
T d2bzga1          30 HQLLKKHLDTFLK--GKSGLRVFFPLCGKAVEMKWFADRG---HSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKV  104 (229)
T ss_dssp             CHHHHHHHHHHHT--TCCSCEEEETTCTTCTHHHHHHHTT---CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEE
T ss_pred             CHHHHHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHhhccccccchhcccccce
Confidence            4556666666665  6789999999999999999999874   37999999999999999886532100           


Q ss_pred             -cCCCCCeEEEEccCCCCC-CCCCCccEEEecCCCCchH--------HHHHhhcccCcEEEEEEc
Q psy7829         185 -LLDSGRVRIVEADAREGY-LPEAPYDVIYYGGCVSEVP--------SRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       185 -~~~~~~v~~~~~d~~~~~-~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~l~~~~~  239 (511)
                       .....+++++++|+.... ...+.||+|+....++++.        +++.++|||||++++...
T Consensus       105 ~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~  169 (229)
T d2bzga1         105 FKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL  169 (229)
T ss_dssp             EEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             eeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEc
Confidence             012357999999987532 3457899999988887653        689999999999887544

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.42  E-value=3.6e-14  Score=127.56  Aligned_cols=115  Identities=22%  Similarity=0.361  Sum_probs=88.9

Q ss_pred             CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCc-----EEEEEcCCHHHHHHHHhhcc--------cc
Q psy7829         355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTG-----HVTGLEHMMDIAIESIANIS--------TN  421 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~-----~v~~id~~~~~~~~~~~~~~--------~~  421 (511)
                      ..|...+++++.....++++++||||||||||.|..+|+.+++.+     +|+++|+++++++.+.+|+.        ..
T Consensus        62 s~P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~  141 (223)
T d1r18a_          62 SAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSG  141 (223)
T ss_dssp             CCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ehhhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCcc
Confidence            467889999998444889999999999999999999999986544     89999999999998877653        45


Q ss_pred             ccccccccccccccccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         422 HIDLIANETIEIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       422 ~v~~i~~d~~~~l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      |+.++.+|..+..+..        .+-++|+ ++|+...+...+.+.|+|||++++.
T Consensus       142 nv~~~~~d~~~~~~~~--------~~fD~Ii-v~~a~~~~p~~l~~~Lk~gG~lV~p  189 (223)
T d1r18a_         142 QLLIVEGDGRKGYPPN--------APYNAIH-VGAAAPDTPTELINQLASGGRLIVP  189 (223)
T ss_dssp             SEEEEESCGGGCCGGG--------CSEEEEE-ECSCBSSCCHHHHHTEEEEEEEEEE
T ss_pred             EEEEEecccccccccc--------cceeeEE-EEeechhchHHHHHhcCCCcEEEEE
Confidence            7888888876543321        1222344 5666666677888999999999875

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.42  E-value=2.5e-13  Score=121.66  Aligned_cols=112  Identities=23%  Similarity=0.377  Sum_probs=87.5

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANET  430 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~  430 (511)
                      .+.|..++++++.  +.+++|++|||||||+|+.+..+|+.++++++|+++|+++++++.+++++.   ..|+.++.+|.
T Consensus        58 i~~P~~~a~~l~~--l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~  135 (213)
T d1dl5a1          58 SSQPSLMALFMEW--VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDG  135 (213)
T ss_dssp             ECCHHHHHHHHHH--TTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG
T ss_pred             eccchhhHHHHHh--hhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCch
Confidence            3468899999998  899999999999999999999999999888999999999988888777665   66777777776


Q ss_pred             ccccc--ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         431 IEIIP--HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       431 ~~~l~--~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .+..+  ..||.++..           ++.-.+...+.+.|+|||+++..
T Consensus       136 ~~~~~~~~~fD~I~~~-----------~~~~~~p~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         136 YYGVPEFSPYDVIFVT-----------VGVDEVPETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             GGCCGGGCCEEEEEEC-----------SBBSCCCHHHHHHEEEEEEEEEE
T ss_pred             HHccccccchhhhhhh-----------ccHHHhHHHHHHhcCCCcEEEEE
Confidence            55433  235544332           22233346778899999998763

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.40  E-value=3.4e-13  Score=120.88  Aligned_cols=90  Identities=22%  Similarity=0.318  Sum_probs=75.5

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      +.++.+|||||||+|.++..++       +++|+|+|+.+++.|+++            ++.++++|+.+.+..+++||+
T Consensus        34 ~~~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~~------------~~~~~~~d~~~l~~~~~~fD~   94 (208)
T d1vlma_          34 LLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKR------------GVFVLKGTAENLPLKDESFDF   94 (208)
T ss_dssp             HCCSSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHHT------------TCEEEECBTTBCCSCTTCEEE
T ss_pred             hCCCCeEEEECCCCcccccccc-------eEEEEeCChhhccccccc------------ccccccccccccccccccccc
Confidence            3466789999999998876652       378999999999998864            589999999876666689999


Q ss_pred             EEecCCCCchH------HHHHhhcccCcEEEEEEc
Q psy7829         211 IYYGGCVSEVP------SRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       211 I~~~~~~~~~~------~~~~~~LkpgG~l~~~~~  239 (511)
                      |++..+++++.      +++.+.|+|||.+++...
T Consensus        95 I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~  129 (208)
T d1vlma_          95 ALMVTTICFVDDPERALKEAYRILKKGGYLIVGIV  129 (208)
T ss_dssp             EEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccccccccccccchhhhhhcCCCCceEEEEec
Confidence            99999987764      789999999999998654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.38  E-value=1.3e-12  Score=114.60  Aligned_cols=131  Identities=14%  Similarity=0.197  Sum_probs=89.2

Q ss_pred             CCCCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c-cccccc
Q psy7829         351 DNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T-NHIDLI  426 (511)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~-~~v~~i  426 (511)
                      ..||...+.-..++..  +.+.++++|||+|||+|++++.+|+..   ++|+++|+++++++.+++|+.   . ++++++
T Consensus        13 ~~~~t~~eir~~il~~--l~~~~g~~VLDiGcGsG~~s~~lA~~~---~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~   87 (186)
T d1l3ia_          13 VPGPTAMEVRCLIMCL--AEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLM   87 (186)
T ss_dssp             SCCCCCHHHHHHHHHH--HCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEE
T ss_pred             CCCCChHHHHHHHHHh--cCCCCCCEEEEEECCeEcccccccccc---eEEEEecCCHHHHHHHHHHHHHcCCCcceEEE
Confidence            3456555555555655  899999999999999999999998764   799999999988888777754   3 578888


Q ss_pred             ccccccccc--ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcCC
Q psy7829         427 ANETIEIIP--HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIST  494 (511)
Q Consensus       427 ~~d~~~~l~--~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~~  494 (511)
                      ++|+.+...  ..+|.++.+...        -..-.+...+.+.|+|+|+++..   .+-.....+...+.+.
T Consensus        88 ~gda~~~~~~~~~~D~v~~~~~~--------~~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~  152 (186)
T d1l3ia_          88 EGDAPEALCKIPDIDIAVVGGSG--------GELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGF  152 (186)
T ss_dssp             ESCHHHHHTTSCCEEEEEESCCT--------TCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred             ECchhhcccccCCcCEEEEeCcc--------ccchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCC
Confidence            888655432  233333221100        01223455667788999998765   4444556666666665

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.36  E-value=3.9e-12  Score=112.51  Aligned_cols=101  Identities=17%  Similarity=0.234  Sum_probs=85.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC--CCCCCCccE
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG--YLPEAPYDV  210 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~  210 (511)
                      ....|||||||+|..+..+|+.. |+..++|+|+++.++..|.+++.+.     ..+|+.++.+|+...  ..+..++|.
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~~-----~l~Ni~~~~~da~~l~~~~~~~~~~~  104 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEV-----GVPNIKLLWVDGSDLTDYFEDGEIDR  104 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHH-----CCSSEEEEECCSSCGGGTSCTTCCSE
T ss_pred             CCCeEEEEeccCCHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhhh-----ccccceeeecCHHHHhhhccCCceeh
Confidence            45689999999999999999997 8899999999999999999998886     467999999998752  234588999


Q ss_pred             EEecCCCCc--------------hHHHHHhhcccCcEEEEEEc
Q psy7829         211 IYYGGCVSE--------------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       211 I~~~~~~~~--------------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      |++..+.++              +++.+.+.|||||.|++..+
T Consensus       105 i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD  147 (204)
T d1yzha1         105 LYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD  147 (204)
T ss_dssp             EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred             hcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEEC
Confidence            999877643              34789999999999988653

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=6.8e-13  Score=120.61  Aligned_cols=98  Identities=16%  Similarity=0.204  Sum_probs=77.1

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC--CCCCCCCc
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE--GYLPEAPY  208 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~f  208 (511)
                      ..+|.+|||||||+|..+..+++..  ..+|+++|+|+.+++.|++++...      ..++.++..|+..  ...+.++|
T Consensus        51 ~~~g~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~f  122 (229)
T d1zx0a1          51 SSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQ------THKVIPLKGLWEDVAPTLPDGHF  122 (229)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGC------SSEEEEEESCHHHHGGGSCTTCE
T ss_pred             ccCCCeEEEeeccchHHHHHHHHcC--CCeEEEeCCCHHHHHHHHHHhhhc------ccccccccccccccccccccccc
Confidence            4678999999999999999999864  357999999999999999998773      3467888887652  22345789


Q ss_pred             cEEEecCCC-----Cc------hHHHHHhhcccCcEEEE
Q psy7829         209 DVIYYGGCV-----SE------VPSRVLNQLKKGGRILA  236 (511)
Q Consensus       209 D~I~~~~~~-----~~------~~~~~~~~LkpgG~l~~  236 (511)
                      |.|+.+...     .+      +.+++.++|||||+|++
T Consensus       123 D~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~  161 (229)
T d1zx0a1         123 DGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY  161 (229)
T ss_dssp             EEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred             cceeecccccccccccccCHHHHHHHHHHHcCCCcEEEE
Confidence            999876443     22      23678999999999976

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.35  E-value=1.7e-12  Score=119.78  Aligned_cols=106  Identities=23%  Similarity=0.238  Sum_probs=88.0

Q ss_pred             HHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC
Q psy7829         122 DAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG  201 (511)
Q Consensus       122 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  201 (511)
                      .+++.++  +.+..+|||||||+|.++..+++++ |+.+++++|+ +++++.+++++...+    ..+++.++.+|..+.
T Consensus        72 ~~~~~~d--~~~~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~~~----~~~ri~~~~~d~~~~  143 (256)
T d1qzza2          72 APADAYD--WSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAG----LADRVTVAEGDFFKP  143 (256)
T ss_dssp             HHHHTSC--CTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTT----CTTTEEEEECCTTSC
T ss_pred             HHHhcCC--CccCCEEEEECCCCCHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhhcC----Ccceeeeeeeecccc
Confidence            3444443  5677899999999999999999997 8899999998 889999999998865    457899999998764


Q ss_pred             CCCCCCccEEEecCCCCch--------HHHHHhhcccCcEEEEE
Q psy7829         202 YLPEAPYDVIYYGGCVSEV--------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       202 ~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~l~~~  237 (511)
                      .+  ..||+|++...+++.        ++++++.|||||++++.
T Consensus       144 ~p--~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~  185 (256)
T d1qzza2         144 LP--VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVL  185 (256)
T ss_dssp             CS--CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cc--ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEE
Confidence            43  469999999888754        47889999999999874

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.34  E-value=1.2e-12  Score=117.23  Aligned_cols=108  Identities=26%  Similarity=0.260  Sum_probs=85.3

Q ss_pred             CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-cccccccccccccc
Q psy7829         355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNHIDLIANETIEI  433 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~~  433 (511)
                      ..|...+++++.  +.+++|++|||||||+||+|..+|+.+   ++|+++|++++++..+++++. ..|+.++.+|....
T Consensus        54 ~~p~~~a~ml~~--L~l~~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g  128 (224)
T d1vbfa_          54 TALNLGIFMLDE--LDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLG  128 (224)
T ss_dssp             CCHHHHHHHHHH--TTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGC
T ss_pred             ehhhhHHHHHHH--hhhcccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhcccccccccCchhhc
Confidence            467888899998  899999999999999999999999987   799999999999998887755 57888888886554


Q ss_pred             ccc--cchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         434 IPH--ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       434 l~~--~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .+.  .||.++           ++++.-.+...+.+.|+|||+++..
T Consensus       129 ~~~~~pfD~Ii-----------v~~a~~~ip~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         129 YEEEKPYDRVV-----------VWATAPTLLCKPYEQLKEGGIMILP  164 (224)
T ss_dssp             CGGGCCEEEEE-----------ESSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             chhhhhHHHHH-----------hhcchhhhhHHHHHhcCCCCEEEEE
Confidence            332  244332           3333444556778889999998875

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.9e-11  Score=111.66  Aligned_cols=111  Identities=11%  Similarity=0.085  Sum_probs=83.0

Q ss_pred             CcccccCCCcccchhHHHHHH----HHHHhhc---CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Q psy7829         103 DVSASLGYAGVMNAPNQIADA----AENLKLH---LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASL  175 (511)
Q Consensus       103 ~~~~~~~~~~~~~~p~~~~~~----~~~l~~~---~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~  175 (511)
                      +..+.+..+..+++|......    .+++...   ..+..++||+|||+|.++..++... ++.+++|+|+++.+++.|+
T Consensus        24 gl~~~v~~~~LiPr~~~r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~-~~~~~~~~Di~~~al~~A~  102 (250)
T d2h00a1          24 GLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAK  102 (250)
T ss_dssp             CCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHH
T ss_pred             CceEEeCCCeecCCCCCHHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhC-CCccccceecCHHHHHHHH
Confidence            345566678888876554333    3333211   1234689999999999999999998 7899999999999999999


Q ss_pred             HHHhccCCCcCCCCCeEEEEccCCCCC------CCCCCccEEEecCCCC
Q psy7829         176 RNISKGNKDLLDSGRVRIVEADAREGY------LPEAPYDVIYYGGCVS  218 (511)
Q Consensus       176 ~~~~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~I~~~~~~~  218 (511)
                      +|++.++    ..+++.++..+.....      ...++||+|+||+|+.
T Consensus       103 ~N~~~n~----l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~  147 (250)
T d2h00a1         103 KNVEQNN----LSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFF  147 (250)
T ss_dssp             HHHHHTT----CTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC
T ss_pred             HHHHHhC----CCcceeeeeeccHHhhhhhhhhcccCceeEEEecCccc
Confidence            9999986    4667888887654322      1246799999999983

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.29  E-value=6.6e-12  Score=115.38  Aligned_cols=100  Identities=25%  Similarity=0.202  Sum_probs=85.1

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      .++|.+|||+|||+|.+++.+|+..  .++|+++|+++.+++.+++|++.++    ..++++++++|+.+.. ..+.||.
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~--~~~V~avd~n~~a~~~~~~N~~~n~----l~~~v~~~~~D~~~~~-~~~~~D~  177 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNK----VEDRMSAYNMDNRDFP-GENIADR  177 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTT----CTTTEEEECSCTTTCC-CCSCEEE
T ss_pred             cCCccEEEECcceEcHHHHHHHHhC--CcEEEEecCCHHHHHHHHHHHHHhC----CCceEEEEEcchHHhc-cCCCCCE
Confidence            6789999999999999999999874  4689999999999999999999986    3567999999998754 3478999


Q ss_pred             EEecCCC--CchHHHHHhhcccCcEEEEE
Q psy7829         211 IYYGGCV--SEVPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       211 I~~~~~~--~~~~~~~~~~LkpgG~l~~~  237 (511)
                      |+++.+.  ..+...+.+.|+|||.+.+.
T Consensus       178 Ii~~~p~~~~~~l~~a~~~l~~gG~lh~~  206 (260)
T d2frna1         178 ILMGYVVRTHEFIPKALSIAKDGAIIHYH  206 (260)
T ss_dssp             EEECCCSSGGGGHHHHHHHEEEEEEEEEE
T ss_pred             EEECCCCchHHHHHHHHhhcCCCCEEEEE
Confidence            9998665  34557889999999998653

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.6e-11  Score=109.62  Aligned_cols=116  Identities=22%  Similarity=0.256  Sum_probs=92.6

Q ss_pred             hhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEE
Q psy7829         116 APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE  195 (511)
Q Consensus       116 ~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  195 (511)
                      .|.... ++..|. ......+|||||||+|+.++.+|+.+.++++++++|.+++..+.|+++++..|    ..++++++.
T Consensus        44 ~~~~g~-lL~~L~-~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag----~~~~i~~~~  117 (219)
T d2avda1          44 TCEQAQ-LLANLA-RLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE----AEHKIDLRL  117 (219)
T ss_dssp             CHHHHH-HHHHHH-HHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT----CTTTEEEEE
T ss_pred             CHHHHH-HHHHHH-HccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcC----ccceEEEEE
Confidence            344433 344333 14567899999999999999999998778999999999999999999999987    466899999


Q ss_pred             ccCCCCC------CCCCCccEEEecCCCCchH---HHHHhhcccCcEEEEE
Q psy7829         196 ADAREGY------LPEAPYDVIYYGGCVSEVP---SRVLNQLKKGGRILAP  237 (511)
Q Consensus       196 ~d~~~~~------~~~~~fD~I~~~~~~~~~~---~~~~~~LkpgG~l~~~  237 (511)
                      +|+.+..      ...++||+|+.+..-....   +.+.+.|+|||.+++.
T Consensus       118 Gda~e~l~~~~~~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~D  168 (219)
T d2avda1         118 KPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVL  168 (219)
T ss_dssp             SCHHHHHHHHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eehhhcchhhhhhcccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEe
Confidence            9975321      1247899999998776543   6788999999999883

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=5.6e-12  Score=119.02  Aligned_cols=114  Identities=16%  Similarity=0.171  Sum_probs=81.1

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCC
Q psy7829         120 IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAR  199 (511)
Q Consensus       120 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  199 (511)
                      .+.+.+.+.  .+++.+|||+|||+|..+..|++..   .+|+|+|+|+.|++.|+++....+... ...+..+...|..
T Consensus        45 ~~~l~~~l~--~~~~~~vLD~GcG~G~~~~~la~~g---~~v~gvD~S~~ml~~A~~~~~~~~~~~-~~~~~~~~~~~~~  118 (292)
T d1xvaa_          45 KAWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEEG---FSVTSVDASDKMLKYALKERWNRRKEP-AFDKWVIEEANWL  118 (292)
T ss_dssp             HHHHHHHHH--HTTCCEEEESSCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTTSH-HHHTCEEEECCGG
T ss_pred             HHHHHHHhh--hcCCCEEEEecCCCcHHHHHHHHcC---CeeeeccCchHHHHHHHHHHHhccccc-ccceeeeeecccc
Confidence            345566665  4567899999999999999999873   479999999999999999887643100 0112345555543


Q ss_pred             C---CCCCCCCccEEEecC-CCCc-------------hHHHHHhhcccCcEEEEEEc
Q psy7829         200 E---GYLPEAPYDVIYYGG-CVSE-------------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       200 ~---~~~~~~~fD~I~~~~-~~~~-------------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      .   ..+...+||.|++.. ++.+             +++++.+.|||||.|++.+.
T Consensus       119 ~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  175 (292)
T d1xvaa_         119 TLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  175 (292)
T ss_dssp             GHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence            1   123346899998753 3333             45899999999999999653

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.25  E-value=6e-12  Score=119.97  Aligned_cols=106  Identities=22%  Similarity=0.238  Sum_probs=86.2

Q ss_pred             hhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC----C
Q psy7829         128 KLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY----L  203 (511)
Q Consensus       128 ~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~  203 (511)
                      ...+++|.+|||+|||+|.+++.++...  ..+|+++|+|+.+++.+++|+..+|    ..++++++++|+.+..    .
T Consensus       140 ~~~~~~g~~VLDl~~g~G~~si~~a~~g--a~~V~~vD~s~~al~~a~~N~~~ng----l~~~~~~~~~d~~~~~~~~~~  213 (324)
T d2as0a2         140 EKWVQPGDRVLDVFTYTGGFAIHAAIAG--ADEVIGIDKSPRAIETAKENAKLNG----VEDRMKFIVGSAFEEMEKLQK  213 (324)
T ss_dssp             GGGCCTTCEEEETTCTTTHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTT----CGGGEEEEESCHHHHHHHHHH
T ss_pred             HhhcCCCCeeecccCcccchhhhhhhcC--CcEEEeecCCHHHHHHHHHHHHHcC----CCccceeeechhhhhhHHHHh
Confidence            3346789999999999999999998763  3589999999999999999999987    3468999999986421    1


Q ss_pred             CCCCccEEEecCCCC---------------chHHHHHhhcccCcEEEEEEc
Q psy7829         204 PEAPYDVIYYGGCVS---------------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       204 ~~~~fD~I~~~~~~~---------------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      ...+||+|+++++..               .+...+.++|||||.|++...
T Consensus       214 ~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~  264 (324)
T d2as0a2         214 KGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC  264 (324)
T ss_dssp             TTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             ccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            346899999998862               234667889999999988654

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=9.3e-12  Score=118.94  Aligned_cols=118  Identities=19%  Similarity=0.171  Sum_probs=88.9

Q ss_pred             hhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCC----cCCCCCe
Q psy7829         116 APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKD----LLDSGRV  191 (511)
Q Consensus       116 ~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~----~~~~~~v  191 (511)
                      .+.....+++.+.  ++++++|||+|||+|..+..+|+.. +..+++|+|+++.+++.|+++.+.....    .....++
T Consensus       136 ~~~~~~~~~~~~~--l~~~~~vlD~GcG~G~~~~~~a~~~-~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i  212 (328)
T d1nw3a_         136 SFDLVAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEY  212 (328)
T ss_dssp             CHHHHHHHHHHSC--CCTTCEEEEETCTTSHHHHHHHHHC-CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred             HHHHHHHHHHHcC--CCCCCEEEEcCCCCCHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCce
Confidence            4556777888776  8899999999999999999999887 4568999999999999998876542100    0135689


Q ss_pred             EEEEccCCCCCCCCC--CccEEEecCCCCc-----hHHHHHhhcccCcEEEE
Q psy7829         192 RIVEADAREGYLPEA--PYDVIYYGGCVSE-----VPSRVLNQLKKGGRILA  236 (511)
Q Consensus       192 ~~~~~d~~~~~~~~~--~fD~I~~~~~~~~-----~~~~~~~~LkpgG~l~~  236 (511)
                      +|+++|+.+....+.  ..|+|+++...+.     .+.++.+.|||||++++
T Consensus       213 ~~~~gd~~~~~~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~  264 (328)
T d1nw3a_         213 TLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVS  264 (328)
T ss_dssp             EEEECCTTSHHHHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             EEEECcccccccccccCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEE
Confidence            999999875332222  2478888655432     23678999999999986

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=4.6e-12  Score=116.41  Aligned_cols=122  Identities=20%  Similarity=0.233  Sum_probs=87.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c-cc
Q psy7829         347 GSAPDNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T-NH  422 (511)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~-~~  422 (511)
                      +.++...|.++.....+...  +.+.+|++|||||||+|..+..+++..+  .+|+|||+++.+++.++++..   . ++
T Consensus         9 ~~h~~~~p~~~~~~~~l~~~--~~l~pg~~VLDiGCG~G~~~~~la~~~~--~~v~GvD~s~~~~~~ar~~~~~~gl~~~   84 (245)
T d1nkva_           9 SEHRIHNPFTEEKYATLGRV--LRMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGVSER   84 (245)
T ss_dssp             SSCSSSSSCCHHHHHHHHHH--TCCCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHHTTCTTT
T ss_pred             hhccccCCCCHHHHHHHHHH--cCCCCCCEEEEEcCCCCHHHHHHHHhcC--CEEEEEecccchhhHHHHHHHHhhcccc
Confidence            44455567899999888887  8999999999999999999999998774  799999999999988776643   3 34


Q ss_pred             cccccccccccc-cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829         423 IDLIANETIEII-PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       423 v~~i~~d~~~~l-~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~  477 (511)
                      ++++.+|..+.. +..||.++....     +......-.+...+.+.|+|||+++.
T Consensus        85 v~~~~~d~~~~~~~~~fD~v~~~~~-----~~~~~d~~~~l~~~~r~LkPGG~l~i  135 (245)
T d1nkva_          85 VHFIHNDAAGYVANEKCDVAACVGA-----TWIAGGFAGAEELLAQSLKPGGIMLI  135 (245)
T ss_dssp             EEEEESCCTTCCCSSCEEEEEEESC-----GGGTSSSHHHHHHHTTSEEEEEEEEE
T ss_pred             chhhhhHHhhccccCceeEEEEEeh-----hhccCCHHHHHHHHHHHcCcCcEEEE
Confidence            888888765542 234554432210     00011334455677778888888765

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.23  E-value=1.1e-11  Score=104.57  Aligned_cols=111  Identities=15%  Similarity=0.140  Sum_probs=84.9

Q ss_pred             HHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC
Q psy7829         123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY  202 (511)
Q Consensus       123 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  202 (511)
                      +...|... -.|.+|||+|||+|.+++.++.+. . .+|+++|.++.+++.++++++.++    ..++++++++|+....
T Consensus         5 ~fn~l~~~-~~g~~vlDl~~GtG~~~iea~~rg-a-~~v~~ve~~~~a~~~~~~n~~~~~----~~~~~~ii~~D~~~~l   77 (152)
T d2esra1           5 IFNMIGPY-FNGGRVLDLFAGSGGLAIEAVSRG-M-SAAVLVEKNRKAQAIIQDNIIMTK----AENRFTLLKMEAERAI   77 (152)
T ss_dssp             HHHHHCSC-CCSCEEEEETCTTCHHHHHHHHTT-C-CEEEEECCCHHHHHHHHHHHHTTT----CGGGEEEECSCHHHHH
T ss_pred             HHHHHHhh-CCCCeEEEcCCccCHHHHHHHHhC-c-ceeeeehhchhhhhhhhhhhhhcc----cccchhhhcccccccc
Confidence            44555422 368999999999999999887764 3 589999999999999999999875    3467999999986422


Q ss_pred             -CCCCCccEEEecCCCCc-----hHHHHH--hhcccCcEEEEEEcc
Q psy7829         203 -LPEAPYDVIYYGGCVSE-----VPSRVL--NQLKKGGRILAPIGP  240 (511)
Q Consensus       203 -~~~~~fD~I~~~~~~~~-----~~~~~~--~~LkpgG~l~~~~~~  240 (511)
                       ...++||+|++++|+..     ....+.  +.|+|+|.+++....
T Consensus        78 ~~~~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~  123 (152)
T d2esra1          78 DCLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDK  123 (152)
T ss_dssp             HHBCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             cccccccceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence             13478999999988742     223333  569999999987553

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.23  E-value=1.1e-11  Score=106.57  Aligned_cols=115  Identities=16%  Similarity=0.107  Sum_probs=82.5

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      +...+.+.+...+..+.+|||+|||+|.+++.++.+.   ++++++|.++.+++.+++|++.++    ...++....+|.
T Consensus        27 v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~g---a~vv~vD~~~~a~~~~~~N~~~~~----~~~~v~~~~~d~   99 (171)
T d1ws6a1          27 LRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEG---WEAVLVEKDPEAVRLLKENVRRTG----LGARVVALPVEV   99 (171)
T ss_dssp             HHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTT---CEEEEECCCHHHHHHHHHHHHHHT----CCCEEECSCHHH
T ss_pred             HHHHHHHHhhccccCCCeEEEeccccchhhhhhhhcc---chhhhcccCHHHHhhhhHHHHhhc----cccceeeeehhc
Confidence            3445566666567789999999999999999877763   368999999999999999999876    233454444443


Q ss_pred             CC--CCCCCCCccEEEecCCCC----chHHHH--HhhcccCcEEEEEEcc
Q psy7829         199 RE--GYLPEAPYDVIYYGGCVS----EVPSRV--LNQLKKGGRILAPIGP  240 (511)
Q Consensus       199 ~~--~~~~~~~fD~I~~~~~~~----~~~~~~--~~~LkpgG~l~~~~~~  240 (511)
                      ..  ......+||+|++++|+.    .....+  ..+|+|||.+++....
T Consensus       100 ~~~~~~~~~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie~~~  149 (171)
T d1ws6a1         100 FLPEAKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             HHHHHHHTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred             ccccccccCCccceeEEccccccCHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence            21  112336799999998863    223333  3479999999886543

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.22  E-value=2.1e-11  Score=116.79  Aligned_cols=98  Identities=24%  Similarity=0.262  Sum_probs=78.5

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ..++.+|||||||+|.++..+|++.  ..+|+++|.++ +++.|+++...++    ...+++++++|..+...+..+||+
T Consensus        36 ~~~~~~VLDlGcGtG~ls~~aa~~G--a~~V~avd~s~-~~~~a~~~~~~~~----~~~~i~~i~~~~~~l~~~~~~~D~  108 (328)
T d1g6q1_          36 LFKDKIVLDVGCGTGILSMFAAKHG--AKHVIGVDMSS-IIEMAKELVELNG----FSDKITLLRGKLEDVHLPFPKVDI  108 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTC--CSEEEEEESST-HHHHHHHHHHHTT----CTTTEEEEESCTTTSCCSSSCEEE
T ss_pred             cCCcCEEEEeCCCCCHHHHHHHHhC--CCEEEEEeCCH-HHHHHHHHHHHhC----ccccceEEEeehhhccCcccceeE
Confidence            3478999999999999999888874  34899999986 6788888888876    567899999999876555688999


Q ss_pred             EEecCCCCc---------hHHHHHhhcccCcEEE
Q psy7829         211 IYYGGCVSE---------VPSRVLNQLKKGGRIL  235 (511)
Q Consensus       211 I~~~~~~~~---------~~~~~~~~LkpgG~l~  235 (511)
                      |++......         +.....++|||||.++
T Consensus       109 i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         109 IISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             EEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            998654421         2356678999999875

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2e-11  Score=114.44  Aligned_cols=104  Identities=17%  Similarity=0.101  Sum_probs=77.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHh-----CCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEE--EEccCC------
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMV-----GPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRI--VEADAR------  199 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~-----~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~--~~~d~~------  199 (511)
                      +..+|||||||+|.++..+++.+     +....++++|+|+.|++.+++++....    ...++.+  ...++.      
T Consensus        40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  115 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKIS----NLENVKFAWHKETSSEYQSRM  115 (280)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCC----SCTTEEEEEECSCHHHHHHHH
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcc----ccccccccchhhhhhhhcchh
Confidence            44589999999999988887654     123468999999999999999987642    2344544  343332      


Q ss_pred             CCCCCCCCccEEEecCCCCchH------HHHHhhcccCcEEEEEEcc
Q psy7829         200 EGYLPEAPYDVIYYGGCVSEVP------SRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       200 ~~~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~l~~~~~~  240 (511)
                      ......++||+|++..+++++.      +++.++|||||.+++.+..
T Consensus       116 ~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~  162 (280)
T d1jqea_         116 LEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVS  162 (280)
T ss_dssp             TTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             cccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEec
Confidence            1122458899999999987663      7899999999999986553

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.21  E-value=1.8e-11  Score=109.69  Aligned_cols=103  Identities=21%  Similarity=0.297  Sum_probs=87.1

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-------
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-------  203 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-------  203 (511)
                      .....+|||+||++|+.++.+|+.++++++++++|.++...+.|++++++.|    ..++++++.+|+.+..+       
T Consensus        57 ~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g----~~~~i~~~~g~a~~~L~~l~~~~~  132 (227)
T d1susa1          57 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG----VDHKIDFREGPALPVLDEMIKDEK  132 (227)
T ss_dssp             HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT----CGGGEEEEESCHHHHHHHHHHCGG
T ss_pred             hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhc----cccceeeeehHHHHHHHHHHhccc
Confidence            3467899999999999999999999778999999999999999999999987    45689999999863221       


Q ss_pred             CCCCccEEEecCCCCchH---HHHHhhcccCcEEEEE
Q psy7829         204 PEAPYDVIYYGGCVSEVP---SRVLNQLKKGGRILAP  237 (511)
Q Consensus       204 ~~~~fD~I~~~~~~~~~~---~~~~~~LkpgG~l~~~  237 (511)
                      ..++||+|+++..-...+   +.+.+.|+|||.+++-
T Consensus       133 ~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~D  169 (227)
T d1susa1         133 NHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYD  169 (227)
T ss_dssp             GTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             cCCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEEc
Confidence            236899999997765543   6788999999999883

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.19  E-value=7.3e-12  Score=114.45  Aligned_cols=132  Identities=23%  Similarity=0.290  Sum_probs=86.5

Q ss_pred             CCCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccc--cccccc
Q psy7829         352 NGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHI--DLIANE  429 (511)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v--~~i~~d  429 (511)
                      .|.+++.++..+++......++|++|||+|||+|.+++.+++. |  .+|+|+|+++.+++.+++|...+++  .+++++
T Consensus        99 FGTG~H~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~-g--~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d  175 (254)
T d2nxca1          99 FGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL-G--GKALGVDIDPMVLPQAEANAKRNGVRPRFLEGS  175 (254)
T ss_dssp             ---CCSHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCGGGHHHHHHHHHHTTCCCEEEESC
T ss_pred             cCccccchhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhc-C--CEEEEEECChHHHHHHHHHHHHcCCceeEEecc
Confidence            4566777777777765556789999999999999999988764 3  7899999999999998888775554  445555


Q ss_pred             cccccc-ccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE--h-HHHHHHHHHHHHhcCC
Q psy7829         430 TIEIIP-HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG--L-EHMMDIAIESIANIST  494 (511)
Q Consensus       430 ~~~~l~-~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~--~-~~ml~~a~~~~~~~~~  494 (511)
                      .....+ ..+|.++.++..+.        .-.+...+.+.|+|||+++.  + ..-.+...+.+++.|+
T Consensus       176 ~~~~~~~~~fD~V~ani~~~~--------l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf  236 (254)
T d2nxca1         176 LEAALPFGPFDLLVANLYAEL--------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGF  236 (254)
T ss_dssp             HHHHGGGCCEEEEEEECCHHH--------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred             ccccccccccchhhhcccccc--------HHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCC
Confidence            433222 33454443321110        12334567788999999874  3 2223444555666676

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.19  E-value=1.6e-11  Score=109.12  Aligned_cols=118  Identities=19%  Similarity=0.177  Sum_probs=79.4

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-ccccccccccccc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNHIDLIANETIE  432 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~  432 (511)
                      |...+..+.++.-..+.++||++|||+|||+|+.+..+|+.+ ++++|+|+|+++.+++.+.++.. ..|+.++..+...
T Consensus        37 p~rsklaa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v-~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~  115 (209)
T d1nt2a_          37 PWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASK  115 (209)
T ss_dssp             GGGCHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHT-TTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTC
T ss_pred             CcchHHHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhc-cCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccC
Confidence            444455655555445788999999999999999999999998 56899999999999998877654 4678877766433


Q ss_pred             cc--cccchhhhhcccCCcEEEEEcC--CccHHHHHHHHHhCCCcEEEEh
Q psy7829         433 II--PHILDLCYLNLHRGAKVLEIGS--GSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       433 ~l--~~~~d~i~~~l~~~~~vLD~~~--g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..  ...++.+.      ....|+..  ....+...+.+.|+|+|.++..
T Consensus       116 ~~~~~~~~~~vd------~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  159 (209)
T d1nt2a_         116 PWKYSGIVEKVD------LIYQDIAQKNQIEILKANAEFFLKEKGEVVIM  159 (209)
T ss_dssp             GGGTTTTCCCEE------EEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccccceEE------EEEecccChhhHHHHHHHHHHHhccCCeEEEE
Confidence            11  11111100      01123322  1223456677889999998654

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.19  E-value=1.6e-11  Score=109.48  Aligned_cols=115  Identities=16%  Similarity=0.234  Sum_probs=87.9

Q ss_pred             hhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEE
Q psy7829         116 APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE  195 (511)
Q Consensus       116 ~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  195 (511)
                      .|.....+..++.  .....+|||+|||+|+.++.+++.++++++|+++|+++.+.+.|+++++..|    ..++|+++.
T Consensus        41 ~~~~G~lL~~lv~--~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~g----l~~~i~l~~  114 (214)
T d2cl5a1          41 GDAKGQIMDAVIR--EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAG----LQDKVTILN  114 (214)
T ss_dssp             HHHHHHHHHHHHH--HHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHT----CGGGEEEEE
T ss_pred             CHHHHHHHHHHHH--hhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcC----CCccceeee
Confidence            3444444444443  3356799999999999999999988778999999999999999999999876    456799999


Q ss_pred             ccCCCCCC------CCCCccEEEecCCCCchH-----HHHHhhcccCcEEEE
Q psy7829         196 ADAREGYL------PEAPYDVIYYGGCVSEVP-----SRVLNQLKKGGRILA  236 (511)
Q Consensus       196 ~d~~~~~~------~~~~fD~I~~~~~~~~~~-----~~~~~~LkpgG~l~~  236 (511)
                      +|..+..+      ..++||+|+++..-....     .+..+.|||||.+++
T Consensus       115 Gd~~e~l~~l~~~~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         115 GASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             SCHHHHGGGHHHHSCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             ccccccccchhhcccccccceeeecccccccccHHHHHHHhCccCCCcEEEE
Confidence            99864221      236799999986544322     345678999998876

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.19  E-value=8.4e-12  Score=118.46  Aligned_cols=100  Identities=24%  Similarity=0.255  Sum_probs=81.9

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC----CCCCCC
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG----YLPEAP  207 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~  207 (511)
                      .+|.+|||+|||+|.+++.+|..   ..+|+++|+|+.+++.|++|++.+|     .++++++++|+.+.    .....+
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ng-----l~~~~~i~~d~~~~~~~~~~~~~~  215 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNG-----LGNVRVLEANAFDLLRRLEKEGER  215 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTT-----CTTEEEEESCHHHHHHHHHHTTCC
T ss_pred             hCCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcC-----CCCcceeeccHHHHhhhhHhhhcC
Confidence            46899999999999999998864   3479999999999999999999975     46899999998642    123468


Q ss_pred             ccEEEecCCCC---------------chHHHHHhhcccCcEEEEEEc
Q psy7829         208 YDVIYYGGCVS---------------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       208 fD~I~~~~~~~---------------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      ||+|+++++..               .+...+.++|||||.|++...
T Consensus       216 fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc  262 (318)
T d1wxxa2         216 FDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  262 (318)
T ss_dssp             EEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            99999998862               234677889999999988644

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.19  E-value=2.8e-11  Score=105.47  Aligned_cols=115  Identities=24%  Similarity=0.280  Sum_probs=94.1

Q ss_pred             hHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829         117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA  196 (511)
Q Consensus       117 p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  196 (511)
                      |-+...+++.+.  +.++..+||++||+|..+..+++.+ ++++|+|+|.++.+++.|+++++..      .+++.++++
T Consensus         9 pVll~evi~~l~--~~~~~~~lD~t~G~Gghs~~il~~~-~~~~vi~~D~d~~~l~~a~~~l~~~------~~r~~~~~~   79 (192)
T d1m6ya2           9 PVMVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEF------SDRVSLFKV   79 (192)
T ss_dssp             CTTHHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGG------TTTEEEEEC
T ss_pred             chHHHHHHHhhC--CCCCCEEEEecCCCcHHHHHHHhcC-CCCeEEEeechHHHHHHHHHhhccc------cccccchhH
Confidence            347777888887  7899999999999999999999998 7899999999999999999998874      357999999


Q ss_pred             cCCCC-----CCCCCCccEEEecCCCCc---------------hHHHHHhhcccCcEEEEEEcc
Q psy7829         197 DAREG-----YLPEAPYDVIYYGGCVSE---------------VPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       197 d~~~~-----~~~~~~fD~I~~~~~~~~---------------~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      ++.+.     ....++||.|+.+..+..               .+..+.++|+|||++++...+
T Consensus        80 ~f~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~  143 (192)
T d1m6ya2          80 SYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH  143 (192)
T ss_dssp             CGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred             HHhhHHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence            87531     112378999999877622               235678899999999886543

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.18  E-value=5.3e-12  Score=119.31  Aligned_cols=179  Identities=15%  Similarity=0.113  Sum_probs=121.6

Q ss_pred             ccCCCCCCCCcccCCCccHHHHHHHHHHcCCCCCH--HHHHHHHhC-CCCCccCCCCCCCcccccCCCcccchhHHHHHH
Q psy7829          47 WVIPPPDNLNHFKNEGTCQTDLVNHLRDIGKIRTE--RVAQAFYKV-DRGNFANEEPYQDVSASLGYAGVMNAPNQIADA  123 (511)
Q Consensus        47 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~a~~~~-~r~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~  123 (511)
                      .++.+.+..++.|+...+..++++.|...|+...+  ....++... ..........|..+.+.++..+       -...
T Consensus        36 a~~~~~p~~iRvN~~k~~~e~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~~vQD~a-------S~l~  108 (313)
T d1ixka_          36 AMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFCLTREPFSITSTPEFLTGLIYIQEAS-------SMYP  108 (313)
T ss_dssp             HTTSCCCCEEEECTTTSCHHHHHHHHHHTTCEEEEETTEEEEEEEEECSSCGGGSHHHHTTSEEECCHH-------HHHH
T ss_pred             HcCCCCCeEEEEcCCcCCHHHHHHHHHhCCCceEECCCCcchhhhccCCCccccCHhhhhceEEEeccc-------ccch
Confidence            34555667889999999999999999998852111  000000000 0000111112333333332211       1122


Q ss_pred             HHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC
Q psy7829         124 AENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL  203 (511)
Q Consensus       124 ~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  203 (511)
                      ...+.  .++|.+|||+|||+|.-+..++......+.++++|+++..+...++++++.|     ..++.+...|......
T Consensus       109 ~~~l~--~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~-----~~~i~~~~~d~~~~~~  181 (313)
T d1ixka_         109 PVALD--PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG-----VLNVILFHSSSLHIGE  181 (313)
T ss_dssp             HHHHC--CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT-----CCSEEEESSCGGGGGG
T ss_pred             hhccc--CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHH-----hhcccccccccccccc
Confidence            33443  7899999999999999999999998788999999999999999999999964     5688888888765433


Q ss_pred             CCCCccEEEecCCCC----------------------------chHHHHHhhcccCcEEEEEEc
Q psy7829         204 PEAPYDVIYYGGCVS----------------------------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       204 ~~~~fD~I~~~~~~~----------------------------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      ....||.|+++++|.                            .++.+..+.|||||++|.++-
T Consensus       182 ~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTC  245 (313)
T d1ixka_         182 LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC  245 (313)
T ss_dssp             GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             ccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeec
Confidence            357899999999882                            123577889999999988643

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.18  E-value=4e-11  Score=114.10  Aligned_cols=98  Identities=24%  Similarity=0.235  Sum_probs=77.3

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEE
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVI  211 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I  211 (511)
                      .++.+|||||||+|.++..+|+.. . .+|+++|.++. ...+++++..++    ..++++++++|..+...+.++||+|
T Consensus        32 ~~~~~VLDiGcG~G~ls~~aa~~G-a-~~V~avd~s~~-~~~a~~~~~~n~----~~~~v~~~~~~~~~~~~~~~~~D~i  104 (316)
T d1oria_          32 FKDKVVLDVGSGTGILCMFAAKAG-A-RKVIGIECSSI-SDYAVKIVKANK----LDHVVTIIKGKVEEVELPVEKVDII  104 (316)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTT-C-SEEEEEECSTT-HHHHHHHHHHTT----CTTTEEEEESCTTTCCCSSSCEEEE
T ss_pred             CCcCEEEEEecCCcHHHHHHHHhC-C-CEEEEEcCcHH-HhhhhhHHHHhC----CccccceEeccHHHcccccceeEEE
Confidence            478999999999999999988864 3 47999999976 467777777765    4678999999998765556889999


Q ss_pred             EecCCCC---------chHHHHHhhcccCcEEEE
Q psy7829         212 YYGGCVS---------EVPSRVLNQLKKGGRILA  236 (511)
Q Consensus       212 ~~~~~~~---------~~~~~~~~~LkpgG~l~~  236 (511)
                      ++.....         .+...+.++|||||.++-
T Consensus       105 vs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         105 ISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             EECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            8864432         233667899999999863

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=8.5e-11  Score=111.66  Aligned_cols=98  Identities=24%  Similarity=0.278  Sum_probs=76.3

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccE
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDV  210 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  210 (511)
                      ..++.+|||||||+|.++..+|++. . .+|+++|.++.+.. +++....++    ..+++.++++|+.+...+..+||+
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~G-a-~~V~aid~s~~~~~-a~~~~~~~~----~~~~i~~~~~~~~~l~~~~~~~D~  105 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAG-A-KKVLGVDQSEILYQ-AMDIIRLNK----LEDTITLIKGKIEEVHLPVEKVDV  105 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTT-C-SEEEEEESSTHHHH-HHHHHHHTT----CTTTEEEEESCTTTSCCSCSCEEE
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcC-C-CEEEEEeCHHHHHH-HHHHHHHhC----CCccceEEEeeHHHhcCccccceE
Confidence            4578999999999999999999874 3 58999999998764 555555554    467899999999876555688999


Q ss_pred             EEecCCCCc---------hHHHHHhhcccCcEEE
Q psy7829         211 IYYGGCVSE---------VPSRVLNQLKKGGRIL  235 (511)
Q Consensus       211 I~~~~~~~~---------~~~~~~~~LkpgG~l~  235 (511)
                      |++....+.         +.....++|||||+++
T Consensus       106 Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         106 IISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             EEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence            998654432         2244567999999986

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.16  E-value=3.3e-11  Score=113.86  Aligned_cols=106  Identities=20%  Similarity=0.149  Sum_probs=85.3

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC----CCC
Q psy7829         130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY----LPE  205 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~  205 (511)
                      ...+|.+|||++||+|.+++.++...  ...|+++|+|+.+++.+++|++.++   +...+++++++|+.+..    ...
T Consensus       141 ~~~~g~~VLdlf~~~G~~sl~aa~~g--a~~V~~vD~s~~a~~~a~~N~~~n~---l~~~~~~~i~~d~~~~l~~~~~~~  215 (317)
T d2b78a2         141 GSAAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANH---LDMANHQLVVMDVFDYFKYARRHH  215 (317)
T ss_dssp             TTTBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTT---CCCTTEEEEESCHHHHHHHHHHTT
T ss_pred             HhhCCCceeecCCCCcHHHHHHHhCC--CceEEEecCCHHHHHHHHHHHHHhc---ccCcceEEEEccHHHHHHHHHhhc
Confidence            35689999999999999998877643  4579999999999999999999887   34568999999986422    134


Q ss_pred             CCccEEEecCCCC---------------chHHHHHhhcccCcEEEEEEcc
Q psy7829         206 APYDVIYYGGCVS---------------EVPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       206 ~~fD~I~~~~~~~---------------~~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      .+||+|++++|..               .+...+.++|+|||.|++....
T Consensus       216 ~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs  265 (317)
T d2b78a2         216 LTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA  265 (317)
T ss_dssp             CCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            6899999998851               2446778999999999986553

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.2e-11  Score=114.29  Aligned_cols=115  Identities=14%  Similarity=0.098  Sum_probs=77.3

Q ss_pred             HHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCC--------------
Q psy7829         123 AAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS--------------  188 (511)
Q Consensus       123 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~--------------  188 (511)
                      +.+.+.....++.+|||+|||+|..+..++...  ..+|+|+|+|+.+++.|+++++.........              
T Consensus        41 ~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~--~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (257)
T d2a14a1          41 LHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSG  118 (257)
T ss_dssp             HHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGG
T ss_pred             HHHHhcccCCCCCEEEEECCCCCHhHHHHhccc--cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccc
Confidence            344443334567899999999999887776653  3479999999999999999987643100000              


Q ss_pred             ----------CCe-EEEEccCC----CCCCCCCCccEEEecCCCCch----------HHHHHhhcccCcEEEEEEc
Q psy7829         189 ----------GRV-RIVEADAR----EGYLPEAPYDVIYYGGCVSEV----------PSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       189 ----------~~v-~~~~~d~~----~~~~~~~~fD~I~~~~~~~~~----------~~~~~~~LkpgG~l~~~~~  239 (511)
                                ..+ .....+..    ......++||+|++..+++++          .+++.++|||||.+++...
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~  194 (257)
T d2a14a1         119 RWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT  194 (257)
T ss_dssp             GHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEe
Confidence                      001 12222221    122345789999998887655          3789999999999998644

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.13  E-value=2.1e-11  Score=111.00  Aligned_cols=109  Identities=12%  Similarity=0.153  Sum_probs=78.3

Q ss_pred             HHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccccccc--c
Q psy7829         360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEI--I  434 (511)
Q Consensus       360 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~--l  434 (511)
                      ...+++.  +++++|++|||||||+|.++..+++.+   ++|+|+|+++++++.|+++..   .+++.++++|..+.  -
T Consensus         5 ~~~l~~~--~~~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~   79 (234)
T d1xxla_           5 LGLMIKT--AECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFP   79 (234)
T ss_dssp             HHHHHHH--HTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSC
T ss_pred             HHHHHHH--hCCCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhccccccccccccccccccccc
Confidence            3445565  899999999999999999999999875   799999999999988877654   56788888876553  1


Q ss_pred             cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         435 PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       435 ~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +..+|.+++...     +.....+-.+...+.+.|+|+|.++..
T Consensus        80 ~~~fD~v~~~~~-----l~~~~d~~~~l~~~~r~LkpgG~~~~~  118 (234)
T d1xxla_          80 DDSFDIITCRYA-----AHHFSDVRKAVREVARVLKQDGRFLLV  118 (234)
T ss_dssp             TTCEEEEEEESC-----GGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccceeeeece-----eecccCHHHHHHHHHHeeCCCcEEEEE
Confidence            234554443211     111123445567788899999987763

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=3.1e-11  Score=112.53  Aligned_cols=177  Identities=15%  Similarity=0.153  Sum_probs=118.3

Q ss_pred             cCCCCCCCCcccCCCccHHHHHHHHHHcCCCC--CHHHHHHHHhCCCCCccCCCCCCCcccccCCCcccchhHHHHHHHH
Q psy7829          48 VIPPPDNLNHFKNEGTCQTDLVNHLRDIGKIR--TERVAQAFYKVDRGNFANEEPYQDVSASLGYAGVMNAPNQIADAAE  125 (511)
Q Consensus        48 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~a~~~~~r~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~  125 (511)
                      .+.+++..+++|+...+...+.+.|...|+..  .+.+..++.......+.....|.++.+.++.-+++       ....
T Consensus        24 ~~~~~p~~lRvN~~k~s~~~~~~~L~~~gi~~~~~~~~p~~l~l~~~~~l~~~~~~~~G~~~vQD~sS~-------l~~~   96 (284)
T d1sqga2          24 NNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDASAQ-------GCMT   96 (284)
T ss_dssp             HTSCCCEEEEECTTTCCHHHHHHHHHHTTCCEECCTTCTTEEEESSCCCGGGSTTGGGTSEEECCHHHH-------THHH
T ss_pred             CCCCCCeEEEECCCCCCHHHHHHHHHhcCCceeecCCCCccceeccccchhhChhhhccEEEecccccc-------cccc
Confidence            44455667888998899999999999887521  11111111111111222223455555544432211       1233


Q ss_pred             HHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC-CCC
Q psy7829         126 NLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG-YLP  204 (511)
Q Consensus       126 ~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~  204 (511)
                      .+.  ..++.+|||+|+|+|.-+..++... .+++|+++|+++..+...++++++.|     ..++.....|.... ...
T Consensus        97 ~L~--~~~g~~vLD~CAaPGgKt~~la~l~-~~~~i~a~d~~~~R~~~l~~~~~r~g-----~~~~~~~~~~~~~~~~~~  168 (284)
T d1sqga2          97 WLA--PQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLG-----MKATVKQGDGRYPSQWCG  168 (284)
T ss_dssp             HHC--CCTTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHHTT-----CCCEEEECCTTCTHHHHT
T ss_pred             ccC--ccccceeEeccCccccchhhhhhhh-hhhhhhhhhcchhhhhhHhhhhhccc-----ccceeeeccccccchhcc
Confidence            443  7889999999999999999999875 66899999999999999999999964     45565555554321 123


Q ss_pred             CCCccEEEecCCCC----------------------------chHHHHHhhcccCcEEEEEEc
Q psy7829         205 EAPYDVIYYGGCVS----------------------------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       205 ~~~fD~I~~~~~~~----------------------------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      .+.||.|+++++|.                            .++.++.+.|||||+|+.++-
T Consensus       169 ~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTC  231 (284)
T d1sqga2         169 EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC  231 (284)
T ss_dssp             TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred             cccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeee
Confidence            36799999999982                            123567788999999998643

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.13  E-value=9.1e-11  Score=105.16  Aligned_cols=114  Identities=18%  Similarity=0.181  Sum_probs=78.5

Q ss_pred             CHHHHHHHHHH-hhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-cccccccccccccc
Q psy7829         356 SERSIAHILDL-CYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNHIDLIANETIEI  433 (511)
Q Consensus       356 ~~~~~~~~~~~-~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~~  433 (511)
                      ..+..+.++.- ..+.++||++|||+|||+|+++..+|+.+||+|+|+|+|+++.+++.+.++.. ..++..+..|....
T Consensus        55 rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~  134 (227)
T d1g8aa_          55 RSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKP  134 (227)
T ss_dssp             TCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCG
T ss_pred             ccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCc
Confidence            33556555542 23678999999999999999999999999999999999999999998887765 34555554443211


Q ss_pred             -----ccccchhhhhcccCCcEEEEEcCC-c-cHHHHHHHHHhCCCcEEEEh
Q psy7829         434 -----IPHILDLCYLNLHRGAKVLEIGSG-S-GYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       434 -----l~~~~d~i~~~l~~~~~vLD~~~g-~-g~~~~~l~~~l~~~g~v~~~  478 (511)
                           ....+|.         ...|+.+- . -.+...+.+.|+|+|.++..
T Consensus       135 ~~~~~~~~~vD~---------i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~  177 (227)
T d1g8aa_         135 EEYRALVPKVDV---------IFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             GGGTTTCCCEEE---------EEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccccceEE---------EEEEccccchHHHHHHHHHHhcccCCeEEEE
Confidence                 1112222         23345442 1 22355667789999987753

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=7.7e-11  Score=114.11  Aligned_cols=117  Identities=21%  Similarity=0.278  Sum_probs=83.6

Q ss_pred             hHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCC----cCCCCCeE
Q psy7829         117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKD----LLDSGRVR  192 (511)
Q Consensus       117 p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~----~~~~~~v~  192 (511)
                      |.+...+++.+.  ++++++|||||||+|..+..+|...+ ..+|+|+|+++.+++.|+++.+..+..    ......+.
T Consensus       202 ~~~i~~Il~~l~--Lkpgd~fLDLGCG~G~~vl~aA~~~g-~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~  278 (406)
T d1u2za_         202 PNFLSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVE  278 (406)
T ss_dssp             HHHHHHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEE
T ss_pred             HHHHHHHHHHhC--CCCCCEEEeCCCCCcHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccce
Confidence            557778888886  89999999999999999999999984 468999999999999999987653200    01122344


Q ss_pred             E-EEccCCCCCC---CCCCccEEEecCCCC-----chHHHHHhhcccCcEEEE
Q psy7829         193 I-VEADAREGYL---PEAPYDVIYYGGCVS-----EVPSRVLNQLKKGGRILA  236 (511)
Q Consensus       193 ~-~~~d~~~~~~---~~~~fD~I~~~~~~~-----~~~~~~~~~LkpgG~l~~  236 (511)
                      + ..++......   .-...|+|+++..+.     ..+.++.+.|||||++++
T Consensus       279 ~~~~~~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs  331 (406)
T d1u2za_         279 FSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIIS  331 (406)
T ss_dssp             EEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             eeeeechhhccccccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEE
Confidence            3 2344332111   013468888865432     234789999999999986

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.12  E-value=1.2e-10  Score=101.57  Aligned_cols=93  Identities=22%  Similarity=0.237  Sum_probs=69.4

Q ss_pred             CcccchhHHHHHHHHHHhhc-CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCC
Q psy7829         111 AGVMNAPNQIADAAENLKLH-LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSG  189 (511)
Q Consensus       111 ~~~~~~p~~~~~~~~~l~~~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~  189 (511)
                      .+..+.+.+.+.++..+... --.|.+|||+|||+|.+++.++...  ..+|+++|+++.+++.|++|+.          
T Consensus        25 eQy~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~g--a~~V~~vDid~~a~~~ar~N~~----------   92 (197)
T d1ne2a_          25 EQYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLG--AESVTAFDIDPDAIETAKRNCG----------   92 (197)
T ss_dssp             --CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTT--BSEEEEEESCHHHHHHHHHHCT----------
T ss_pred             ccCCCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcC--CCcccccccCHHHHHHHHHccc----------
Confidence            33444455666665544321 2268999999999999998877753  3579999999999999999854          


Q ss_pred             CeEEEEccCCCCCCCCCCccEEEecCCCC
Q psy7829         190 RVRIVEADAREGYLPEAPYDVIYYGGCVS  218 (511)
Q Consensus       190 ~v~~~~~d~~~~~~~~~~fD~I~~~~~~~  218 (511)
                      +++++++|+.+.   .+.||+|++|+++.
T Consensus        93 ~~~~~~~D~~~l---~~~fD~Vi~NPPfg  118 (197)
T d1ne2a_          93 GVNFMVADVSEI---SGKYDTWIMNPPFG  118 (197)
T ss_dssp             TSEEEECCGGGC---CCCEEEEEECCCC-
T ss_pred             cccEEEEehhhc---CCcceEEEeCcccc
Confidence            578999998763   36799999999873

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.11  E-value=2.2e-11  Score=110.61  Aligned_cols=109  Identities=14%  Similarity=0.245  Sum_probs=78.9

Q ss_pred             HHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc---ccccccccccccccc--c
Q psy7829         360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI---STNHIDLIANETIEI--I  434 (511)
Q Consensus       360 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~---~~~~v~~i~~d~~~~--l  434 (511)
                      .+++++.  +.++++++|||||||+|.++..+++..   .+|+|+|+++++++.++++.   +.+++++++++..+.  .
T Consensus         4 ~~~ll~~--~~l~~~~rVLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~   78 (231)
T d1vl5a_           4 LAKLMQI--AALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT   78 (231)
T ss_dssp             HHHHHHH--HTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSC
T ss_pred             HHHHHHh--cCCCCcCEEEEecccCcHHHHHHHHhC---CEEEEEECCHHHHhhhhhccccccccccccccccccccccc
Confidence            5678887  899999999999999999999999775   69999999999988876654   467888888876543  1


Q ss_pred             cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         435 PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       435 ~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +..+|.+++...     +..-..+-.+...+.+.|+|||.++..
T Consensus        79 ~~~fD~v~~~~~-----l~~~~d~~~~l~~~~r~LkpgG~l~i~  117 (231)
T d1vl5a_          79 DERFHIVTCRIA-----AHHFPNPASFVSEAYRVLKKGGQLLLV  117 (231)
T ss_dssp             TTCEEEEEEESC-----GGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccccccccc-----ccccCCHHHHHHHHHHhcCCCcEEEEE
Confidence            334555443211     111123445567788888999988764

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=3.6e-10  Score=105.60  Aligned_cols=149  Identities=14%  Similarity=0.146  Sum_probs=104.1

Q ss_pred             CCcccCCCccHHHHHHHHHHcCCCCC--HHHHHHHHhCCCCCccCCC------------------CCCCcccccCCCccc
Q psy7829          55 LNHFKNEGTCQTDLVNHLRDIGKIRT--ERVAQAFYKVDRGNFANEE------------------PYQDVSASLGYAGVM  114 (511)
Q Consensus        55 ~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~~a~~~~~r~~~~~~~------------------~y~~~~~~~~~~~~~  114 (511)
                      .+++|+...+..++++.|.+.|+...  ....+.+.......|....                  .|..+.+.++..+++
T Consensus         5 ~~RVNtlk~~~ee~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~~G~~~~QD~sS~   84 (293)
T d2b9ea1           5 FVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASC   84 (293)
T ss_dssp             EEEECTTTCCHHHHHHHHHHTTCEEEEECSSHHHHHTCCTTEEEECSSSTTEEEECTTCCCTTSHHHHTTSEEECCTGGG
T ss_pred             EEEECCCcCCHHHHHHHHHHcCCccccccccchhhhhcccccccccCCCCCeEEeCCCCCcccChHHhCcEEEEcCCccc
Confidence            35778888999999999999886311  1122333333322222111                  122233333322222


Q ss_pred             chhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEE
Q psy7829         115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIV  194 (511)
Q Consensus       115 ~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~  194 (511)
                          +   ....+.  ..+|.+|||++||+|+.+..++...++.++|+++|+++..++..++++++.     +..++.+.
T Consensus        85 ----l---~~~~L~--~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~-----g~~~~~~~  150 (293)
T d2b9ea1          85 ----L---PAMLLD--PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARA-----GVSCCELA  150 (293)
T ss_dssp             ----H---HHHHHC--CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT-----TCCSEEEE
T ss_pred             ----c---cccccC--CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhc-----Cccceeee
Confidence                2   223343  778999999999999999999999888899999999999999999999996     46789999


Q ss_pred             EccCCCCCCC---CCCccEEEecCCC
Q psy7829         195 EADAREGYLP---EAPYDVIYYGGCV  217 (511)
Q Consensus       195 ~~d~~~~~~~---~~~fD~I~~~~~~  217 (511)
                      ..|.......   .+.||.|+++++|
T Consensus       151 ~~d~~~~~~~~~~~~~fD~VL~DaPC  176 (293)
T d2b9ea1         151 EEDFLAVSPSDPRYHEVHYILLDPSC  176 (293)
T ss_dssp             ECCGGGSCTTCGGGTTEEEEEECCCC
T ss_pred             ehhhhhhcccccccceeeEEeecCcc
Confidence            9998653222   2679999999887

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.10  E-value=1.5e-10  Score=107.82  Aligned_cols=117  Identities=17%  Similarity=0.032  Sum_probs=86.6

Q ss_pred             hhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEE
Q psy7829         116 APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE  195 (511)
Q Consensus       116 ~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  195 (511)
                      +......+.+.+. ...++.+|||++||+|.+++.++...   ++|+++|.|+.+++.|++|++.++   +...+++|++
T Consensus       116 qr~nr~~~~~~~~-~~~~~~rVLdlf~~tG~~sl~aa~~G---A~V~~VD~s~~al~~a~~N~~ln~---~~~~~~~~i~  188 (309)
T d2igta1         116 QIVHWEWLKNAVE-TADRPLKVLNLFGYTGVASLVAAAAG---AEVTHVDASKKAIGWAKENQVLAG---LEQAPIRWIC  188 (309)
T ss_dssp             GHHHHHHHHHHHH-HSSSCCEEEEETCTTCHHHHHHHHTT---CEEEEECSCHHHHHHHHHHHHHHT---CTTSCEEEEC
T ss_pred             hhHHHHHHHHHHh-hccCCCeEEEecCCCcHHHHHHHhCC---CeEEEEeChHHHHHHHHHhhhhhc---ccCCcEEEEe
Confidence            3334444444444 34578899999999999999988753   479999999999999999999886   2345799999


Q ss_pred             ccCCCCC----CCCCCccEEEecCCCC----------------chHHHHHhhcccCcEEEEEEc
Q psy7829         196 ADAREGY----LPEAPYDVIYYGGCVS----------------EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       196 ~d~~~~~----~~~~~fD~I~~~~~~~----------------~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      +|+.+..    .....||+|+++++..                .+...+.++|+|||.+++...
T Consensus       189 ~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~  252 (309)
T d2igta1         189 EDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA  252 (309)
T ss_dssp             SCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred             CCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence            9986422    1236899999998741                122457789999997666443

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.08  E-value=6.5e-10  Score=97.89  Aligned_cols=110  Identities=17%  Similarity=0.199  Sum_probs=78.3

Q ss_pred             hhHHHHHHHHHHhh-cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEE
Q psy7829         116 APNQIADAAENLKL-HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIV  194 (511)
Q Consensus       116 ~p~~~~~~~~~l~~-~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~  194 (511)
                      .+.+...++..... .--.|.+|||+|||+|.+++.++...  ..+|+++|+++.+++.+++|++.++      .+.+++
T Consensus        28 p~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g--~~~v~~vdi~~~~~~~a~~N~~~~~------~~~~~~   99 (201)
T d1wy7a1          28 PGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLG--AKEVICVEVDKEAVDVLIENLGEFK------GKFKVF   99 (201)
T ss_dssp             CHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHTGGGT------TSEEEE
T ss_pred             CHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcC--CCEEEEEcCcHHHHHHHHHHHHHcC------CCceEE
Confidence            34455555443321 12368899999999999999887653  3589999999999999999988753      368899


Q ss_pred             EccCCCCCCCCCCccEEEecCCCCch-----HHHHHhhcccCcEEEE
Q psy7829         195 EADAREGYLPEAPYDVIYYGGCVSEV-----PSRVLNQLKKGGRILA  236 (511)
Q Consensus       195 ~~d~~~~~~~~~~fD~I~~~~~~~~~-----~~~~~~~LkpgG~l~~  236 (511)
                      .+|....   .++||+|++++++...     ..-+...+.+++.++.
T Consensus       100 ~~d~~~~---~~~fD~Vi~nPP~~~~~~~~d~~~l~~~~~~~~~v~~  143 (201)
T d1wy7a1         100 IGDVSEF---NSRVDIVIMNPPFGSQRKHADRPFLLKAFEISDVVYS  143 (201)
T ss_dssp             ESCGGGC---CCCCSEEEECCCCSSSSTTTTHHHHHHHHHHCSEEEE
T ss_pred             ECchhhh---CCcCcEEEEcCccccccccccHHHHHHHHhhcccchh
Confidence            9998653   3679999999987432     1223445555665544

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.07  E-value=2.1e-10  Score=103.16  Aligned_cols=139  Identities=14%  Similarity=0.108  Sum_probs=88.0

Q ss_pred             CHHHHHHHHHH-hhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-cccccccccccccc
Q psy7829         356 SERSIAHILDL-CYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNHIDLIANETIEI  433 (511)
Q Consensus       356 ~~~~~~~~~~~-~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~~  433 (511)
                      ..+..+.++.- ..+.+++|.+|||+|||+|+.+..+|..+ |++.|+|+|+++.+++.+.++.. .+|+..+..+....
T Consensus        56 rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~-~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~  134 (230)
T d1g8sa_          56 KSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKP  134 (230)
T ss_dssp             TCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCG
T ss_pred             ccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccC
Confidence            33555554442 23678999999999999999999999876 78999999999999998877655 45566665554332


Q ss_pred             ccccchhhhhcccCCcEEEEEcC--CccHHHHHHHHHhCCCcEEEEh------------HHHHHHHHHHHHhcCCCceEE
Q psy7829         434 IPHILDLCYLNLHRGAKVLEIGS--GSGYLATLMAHLVGPTGHVTGL------------EHMMDIAIESIANISTNHIDL  499 (511)
Q Consensus       434 l~~~~d~i~~~l~~~~~vLD~~~--g~g~~~~~l~~~l~~~g~v~~~------------~~ml~~a~~~~~~~~~~~i~~  499 (511)
                      ... .+....   -....-|+..  ..-.+...+.+.|+|+|.++..            ....+...+.+++.|+..++.
T Consensus       135 ~~~-~~~~~~---v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~  210 (230)
T d1g8sa_         135 QEY-ANIVEK---VDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDE  210 (230)
T ss_dssp             GGG-TTTCCC---EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEE
T ss_pred             ccc-ccccce---eEEeeccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEE
Confidence            211 110000   0001112221  1233356677789999987764            445566667777777633443

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.06  E-value=3.1e-10  Score=98.25  Aligned_cols=116  Identities=17%  Similarity=0.170  Sum_probs=88.8

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      +...+.+.|. ....+.+|||++||+|.+++.++.+.  ..+|+.+|.++.+++.+++|++..+    ...+++++++|+
T Consensus        28 vrealFn~l~-~~~~~~~vLDlfaGsG~~g~ea~srG--a~~v~~ve~~~~a~~~~~~N~~~~~----~~~~~~i~~~D~  100 (182)
T d2fhpa1          28 VKESIFNMIG-PYFDGGMALDLYSGSGGLAIEAVSRG--MDKSICIEKNFAALKVIKENIAITK----EPEKFEVRKMDA  100 (182)
T ss_dssp             HHHHHHHHHC-SCCSSCEEEETTCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHT----CGGGEEEEESCH
T ss_pred             HHHHHHHHHH-HhcCCCEEEEcccccccccceeeecc--hhHHHHHHHHHHHHHHHHHHhhhhh----cccccccccccc
Confidence            4455566664 23478999999999999999888875  3489999999999999999998865    345899999998


Q ss_pred             CCCC----CCCCCccEEEecCCCCc-----hHHHHH--hhcccCcEEEEEEccC
Q psy7829         199 REGY----LPEAPYDVIYYGGCVSE-----VPSRVL--NQLKKGGRILAPIGPM  241 (511)
Q Consensus       199 ~~~~----~~~~~fD~I~~~~~~~~-----~~~~~~--~~LkpgG~l~~~~~~~  241 (511)
                      ....    ....+||+|++++|+..     ++..+.  .+|+|+|.+++.....
T Consensus       101 ~~~l~~~~~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E~~~~  154 (182)
T d2fhpa1         101 NRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKT  154 (182)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             hhhhhhhcccCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEEcCCC
Confidence            6421    13357999999998742     234444  3699999999876544

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.7e-10  Score=106.63  Aligned_cols=116  Identities=16%  Similarity=0.198  Sum_probs=78.3

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCC------------
Q psy7829         120 IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLD------------  187 (511)
Q Consensus       120 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~------------  187 (511)
                      ...+.+.+......|.+|||+|||+|.++...+...  ..+|+++|+|+.+++.+++++...... +.            
T Consensus        41 ~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~~~~-~d~~~~~~~~~~~~  117 (263)
T d2g72a1          41 LRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGA-FNWSMYSQHACLIE  117 (263)
T ss_dssp             HHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTC-CCCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcCccc-ccchhhhhhhhhhc
Confidence            333444444344578899999999998876555443  237999999999999999887653210 00            


Q ss_pred             --------------CCCeEEEEccCCCCC------CCCCCccEEEecCCCCch----------HHHHHhhcccCcEEEEE
Q psy7829         188 --------------SGRVRIVEADAREGY------LPEAPYDVIYYGGCVSEV----------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       188 --------------~~~v~~~~~d~~~~~------~~~~~fD~I~~~~~~~~~----------~~~~~~~LkpgG~l~~~  237 (511)
                                    .....+..+|+....      ...++||+|++..+++++          .+++.++|||||.|++.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~  197 (263)
T d2g72a1         118 GKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI  197 (263)
T ss_dssp             CSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence                          001234556765321      123679999998877654          36789999999999885


Q ss_pred             E
Q psy7829         238 I  238 (511)
Q Consensus       238 ~  238 (511)
                      .
T Consensus       198 ~  198 (263)
T d2g72a1         198 G  198 (263)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=5.3e-10  Score=97.03  Aligned_cols=113  Identities=14%  Similarity=0.072  Sum_probs=85.5

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCC
Q psy7829         120 IADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAR  199 (511)
Q Consensus       120 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  199 (511)
                      ...+.+.|... -.+.+|||++||+|.+++.++.+.  ..+|+.+|.++.+++.+++|++..     ...++.++.+|+.
T Consensus        31 re~lfn~l~~~-~~~~~vLDlfaGsG~~giealsrG--a~~v~~VE~~~~a~~~~k~N~~~~-----~~~~~~ii~~d~~  102 (183)
T d2fpoa1          31 RETLFNWLAPV-IVDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATL-----KAGNARVVNSNAM  102 (183)
T ss_dssp             HHHHHHHHHHH-HTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHT-----TCCSEEEECSCHH
T ss_pred             HHHHHhhhhcc-cchhhhhhhhccccceeeeEEecC--cceeEEEEEeechhhHHHHHHhhc-----cccceeeeeeccc
Confidence            34455555422 267899999999999999888875  348999999999999999999875     4568999999976


Q ss_pred             CCC-CCCCCccEEEecCCCCch-----HHHHH--hhcccCcEEEEEEcc
Q psy7829         200 EGY-LPEAPYDVIYYGGCVSEV-----PSRVL--NQLKKGGRILAPIGP  240 (511)
Q Consensus       200 ~~~-~~~~~fD~I~~~~~~~~~-----~~~~~--~~LkpgG~l~~~~~~  240 (511)
                      ... ....+||+|++++|+..-     +..+.  .+|+++|.+++....
T Consensus       103 ~~l~~~~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE~~~  151 (183)
T d2fpoa1         103 SFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEV  151 (183)
T ss_dssp             HHHSSCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             ccccccccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            422 234689999999997542     23333  358999999987543

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.92  E-value=8.7e-09  Score=90.50  Aligned_cols=115  Identities=14%  Similarity=0.275  Sum_probs=78.5

Q ss_pred             CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHh---hcccccccccccccccccc----ccchhhhhcc
Q psy7829         373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA---NISTNHIDLIANETIEIIP----HILDLCYLNL  445 (511)
Q Consensus       373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~---~~~~~~v~~i~~d~~~~l~----~~~d~i~~~l  445 (511)
                      .+..|||||||+|..++.+|+.. |+..++|+|++..++..+.+   +.+..|+.++.+|+....+    ..++.++...
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~-p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~f  107 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF  107 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred             CCceEEEEEecCcHHHHHHHHhC-CCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccc
Confidence            45689999999999999999987 88999999999888877654   4557889999998765432    1222222211


Q ss_pred             cCCc--------EEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcC
Q psy7829         446 HRGA--------KVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIS  493 (511)
Q Consensus       446 ~~~~--------~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~  493 (511)
                      +..+        +++     +-.+...+++.|+|||.+...   ....+.+.+.+...+
T Consensus       108 p~P~~k~~h~k~Rl~-----~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~  161 (204)
T d2fcaa1         108 SDPWPKKRHEKRRLT-----YSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYG  161 (204)
T ss_dssp             CCCCCSGGGGGGSTT-----SHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred             ccccchhhhcchhhh-----HHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCC
Confidence            1100        000     124667888999999998765   455555555555544

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.90  E-value=4.6e-09  Score=97.35  Aligned_cols=105  Identities=17%  Similarity=0.190  Sum_probs=72.2

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccc----ccccccccccc
Q psy7829         358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH----IDLIANETIEI  433 (511)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~----v~~i~~d~~~~  433 (511)
                      ..+.+++..  +.+++|++|||||||+|.++..+++..|  .+|+|||+++++++.+++++...+    +.+...|.. .
T Consensus        39 ~k~~~~~~~--l~l~~g~~VLDiGCG~G~~a~~~a~~~g--~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~-~  113 (280)
T d2fk8a1          39 AKVDLNLDK--LDLKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWE-D  113 (280)
T ss_dssp             HHHHHHHTT--SCCCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGG-G
T ss_pred             HHHHHHHHH--cCCCCCCEEEEecCCchHHHHHHHHhCc--eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhh-h
Confidence            334555555  7899999999999999999999998886  799999999999988877665333    333333322 1


Q ss_pred             ccccchhhhhcccCCcEEEEEcC----Cc---cHHHHHHHHHhCCCcEEEE
Q psy7829         434 IPHILDLCYLNLHRGAKVLEIGS----GS---GYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       434 l~~~~d~i~~~l~~~~~vLD~~~----g~---g~~~~~l~~~l~~~g~v~~  477 (511)
                      ++..+|.          |+-+++    +.   ..+...+++.|+|+|+++.
T Consensus       114 ~~~~fD~----------i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i  154 (280)
T d2fk8a1         114 FAEPVDR----------IVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTV  154 (280)
T ss_dssp             CCCCCSE----------EEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred             hccchhh----------hhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEE
Confidence            2333333          332332    21   2345678889999999864

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=98.89  E-value=9.8e-10  Score=102.69  Aligned_cols=103  Identities=17%  Similarity=0.133  Sum_probs=72.7

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----cccccccccccccc--ccccchhhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETIEI--IPHILDLCY  442 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~~~--l~~~~d~i~  442 (511)
                      ..++++.+|||||||+|..+..+|+..+  .+|+|+|+++.+++.++++..    .++++++++|..+.  -+..+|.++
T Consensus        63 ~~l~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~  140 (282)
T d2o57a1          63 GVLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIW  140 (282)
T ss_dssp             TCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEE
T ss_pred             cCCCCCCEEEEeCCCCcHHHhhhhccCC--cEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhh
Confidence            5788999999999999999999998875  799999999998887776554    24688888876543  223455544


Q ss_pred             hcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         443 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       443 ~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ....     +..-...-.+...+.+.|+|||.++..
T Consensus       141 ~~~~-----l~h~~d~~~~l~~~~~~LkpgG~l~~~  171 (282)
T d2o57a1         141 SQDA-----FLHSPDKLKVFQECARVLKPRGVMAIT  171 (282)
T ss_dssp             EESC-----GGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccch-----hhhccCHHHHHHHHHHhcCCCcEEEEE
Confidence            3210     000012334567788889999987764

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.86  E-value=2.3e-09  Score=99.35  Aligned_cols=104  Identities=19%  Similarity=0.215  Sum_probs=74.2

Q ss_pred             HHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----ccccccccccccccc
Q psy7829         359 SIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETIEII  434 (511)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~~~l  434 (511)
                      .+..++..  +.+++|++|||||||+|..++.+|+..|  .+|+||++++++++.+.++..    ..++++...|..+ +
T Consensus        50 k~~~~~~~--l~l~~G~~VLDiGCG~G~~a~~~a~~~g--~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~-~  124 (285)
T d1kpga_          50 KIDLALGK--LGLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-F  124 (285)
T ss_dssp             HHHHHHTT--TTCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-C
T ss_pred             HHHHHHHH--cCCCCCCEEEEecCcchHHHHHHHhcCC--cceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhc-c
Confidence            34455554  8899999999999999999999999986  899999999988887766543    3446666665433 3


Q ss_pred             cccchhhhhcccCCcEEEEEcC----C---ccHHHHHHHHHhCCCcEEEE
Q psy7829         435 PHILDLCYLNLHRGAKVLEIGS----G---SGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       435 ~~~~d~i~~~l~~~~~vLD~~~----g---~g~~~~~l~~~l~~~g~v~~  477 (511)
                      +..+|.          ++-+++    |   -..+...+.+.|+|+|+++.
T Consensus       125 ~~~fD~----------i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l  164 (285)
T d1kpga_         125 DEPVDR----------IVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLL  164 (285)
T ss_dssp             CCCCSE----------EEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEE
T ss_pred             cccccc----------eeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEE
Confidence            334443          333332    1   13456778889999998764

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.85  E-value=3.2e-09  Score=93.40  Aligned_cols=49  Identities=22%  Similarity=0.141  Sum_probs=44.9

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST  420 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~  420 (511)
                      +.+++|.+|||+|||+|+.+..||+..   .+|+|+|+++.+++.++++.+.
T Consensus        16 l~~~~~~rvLd~GCG~G~~a~~la~~G---~~V~gvD~S~~~i~~a~~~~~~   64 (201)
T d1pjza_          16 LNVVPGARVLVPLCGKSQDMSWLSGQG---YHVVGAELSEAAVERYFTERGE   64 (201)
T ss_dssp             HCCCTTCEEEETTTCCSHHHHHHHHHC---CEEEEEEECHHHHHHHHHHHCS
T ss_pred             cCCCCCCEEEEecCcCCHHHHHHHHcC---CceEeecccHHHHHHHHHHhcc
Confidence            688999999999999999999999875   8999999999999999887653

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.84  E-value=1e-08  Score=95.15  Aligned_cols=58  Identities=26%  Similarity=0.229  Sum_probs=48.2

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc
Q psy7829         358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS  419 (511)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~  419 (511)
                      .....++..  +.+++|++|||||||+|.+++.+|+..|  .+|+||+++.+++..+.++..
T Consensus        48 ~k~~~~~~~--l~l~~G~~VLDiGCG~G~~~~~~a~~~g--~~v~git~s~~q~~~a~~~~~  105 (291)
T d1kpia_          48 AKRKLALDK--LNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFD  105 (291)
T ss_dssp             HHHHHHHHT--TCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHh--cCCCCCCEEEEecCcchHHHHHHHHhcC--cceeeccchHHHHHHHHHHHH
Confidence            345555565  8999999999999999999999999886  899999999988877665543

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.84  E-value=1.5e-09  Score=97.80  Aligned_cols=106  Identities=13%  Similarity=0.185  Sum_probs=66.4

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHh-CCCcEEEEEcCCHHHHHHHHhhcc----ccccccccccccccccccchhhhhc
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLV-GPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETIEIIPHILDLCYLN  444 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~-~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~~~l~~~~d~i~~~  444 (511)
                      .++++.+|||+|||+|..+..+++.. .|+.+|+|+|++++|++.|++++.    ..++++..+|..+.....++.+...
T Consensus        36 ~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~  115 (225)
T d1im8a_          36 FVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILN  115 (225)
T ss_dssp             HCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEE
T ss_pred             hcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEe
Confidence            46789999999999999999999865 366899999999999999988754    2334555555443322222211110


Q ss_pred             ccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         445 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       445 l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..-  ..+.. -..-.+...+.+.|+|+|.++..
T Consensus       116 ~~l--~~~~~-~d~~~~l~~i~~~LkpgG~li~~  146 (225)
T d1im8a_         116 FTL--QFLPP-EDRIALLTKIYEGLNPNGVLVLS  146 (225)
T ss_dssp             SCG--GGSCG-GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eec--cccCh-hhHHHHHHHHHHhCCCCceeecc
Confidence            000  00000 01123456777888888877753

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.82  E-value=3.2e-09  Score=92.32  Aligned_cols=92  Identities=23%  Similarity=0.227  Sum_probs=68.2

Q ss_pred             CCCCCHHHHHHHHHHhhc-CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccc
Q psy7829         352 NGPSSERSIAHILDLCYL-NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANET  430 (511)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~-~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~  430 (511)
                      +.++++..++.++..+.. .--.|.+|||+|||+|.+++.++... + .+|+++|+++++++.+++|..  +++++++|.
T Consensus        26 Qy~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~g-a-~~V~~vDid~~a~~~ar~N~~--~~~~~~~D~  101 (197)
T d1ne2a_          26 QYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLG-A-ESVTAFDIDPDAIETAKRNCG--GVNFMVADV  101 (197)
T ss_dssp             -CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTT-B-SEEEEEESCHHHHHHHHHHCT--TSEEEECCG
T ss_pred             cCCCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcC-C-CcccccccCHHHHHHHHHccc--cccEEEEeh
Confidence            345667777776654222 22369999999999999998877654 3 689999999999999988864  678888876


Q ss_pred             cccccccchhhhhcccCC
Q psy7829         431 IEIIPHILDLCYLNLHRG  448 (511)
Q Consensus       431 ~~~l~~~~d~i~~~l~~~  448 (511)
                      .+ ++..+|.+++|++-+
T Consensus       102 ~~-l~~~fD~Vi~NPPfg  118 (197)
T d1ne2a_         102 SE-ISGKYDTWIMNPPFG  118 (197)
T ss_dssp             GG-CCCCEEEEEECCCC-
T ss_pred             hh-cCCcceEEEeCcccc
Confidence            54 567788888876654

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.81  E-value=1.4e-09  Score=97.89  Aligned_cols=100  Identities=13%  Similarity=0.212  Sum_probs=67.7

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc--ccccccccccccc--ccccchhhhhcc
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST--NHIDLIANETIEI--IPHILDLCYLNL  445 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~--~~v~~i~~d~~~~--l~~~~d~i~~~l  445 (511)
                      -++++.+|||||||+|.++..+++..   .+|+|+|+++++++.++++...  .++.++.+|....  -...+|.+++..
T Consensus        34 ~l~~~~~ILDiGcG~G~~~~~la~~~---~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~  110 (226)
T d1ve3a1          34 YMKKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFID  110 (226)
T ss_dssp             SCCSCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEES
T ss_pred             hcCCCCEEEEECCCcchhhhhHhhhh---cccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEec
Confidence            46788999999999999999999753   7999999999999988776542  3455566554432  223455544321


Q ss_pred             cCCcEEEEEcCC---ccHHHHHHHHHhCCCcEEEEh
Q psy7829         446 HRGAKVLEIGSG---SGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       446 ~~~~~vLD~~~g---~g~~~~~l~~~l~~~g~v~~~  478 (511)
                           ++. ...   ...+...+.+.|+|||.++..
T Consensus       111 -----~l~-~~~~~d~~~~l~~i~~~LkpgG~lii~  140 (226)
T d1ve3a1         111 -----SIV-HFEPLELNQVFKEVRRVLKPSGKFIMY  140 (226)
T ss_dssp             -----CGG-GCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -----chh-hCChhHHHHHHHHHHHHcCcCcEEEEE
Confidence                 110 011   122456788889999987644

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.80  E-value=4.7e-08  Score=85.72  Aligned_cols=115  Identities=15%  Similarity=0.237  Sum_probs=76.8

Q ss_pred             CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHh---hccccccccccccccccccc----cchhhhhcc
Q psy7829         373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA---NISTNHIDLIANETIEIIPH----ILDLCYLNL  445 (511)
Q Consensus       373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~---~~~~~~v~~i~~d~~~~l~~----~~d~i~~~l  445 (511)
                      ....|||||||+|.++..+|+.. |+..++|+|++..++..+.+   +.+..|+.++.+|+....+.    .++.++...
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f  109 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF  109 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred             CCCeEEEEeccCCHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccc
Confidence            45689999999999999999987 88999999999888777655   44578899999987664321    122222211


Q ss_pred             cCCc--------EEEEEcCCccHHHHHHHHHhCCCcEEEEh---HHHHHHHHHHHHhcC
Q psy7829         446 HRGA--------KVLEIGSGSGYLATLMAHLVGPTGHVTGL---EHMMDIAIESIANIS  493 (511)
Q Consensus       446 ~~~~--------~vLD~~~g~g~~~~~l~~~l~~~g~v~~~---~~ml~~a~~~~~~~~  493 (511)
                      +..+        +++     +-.+...+++.|+|||.+...   +...+.+.+.....+
T Consensus       110 PdPw~K~~h~krRl~-----~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~  163 (204)
T d1yzha1         110 SDPWPKKRHEKRRLT-----YKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYG  163 (204)
T ss_dssp             CCCCCSGGGGGGSTT-----SHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred             cccccchhhhhhhhh-----HHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCC
Confidence            1100        000     135567888999999998764   344444444444443

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.80  E-value=1.1e-09  Score=100.23  Aligned_cols=116  Identities=11%  Similarity=0.093  Sum_probs=72.1

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc--ccccccccccccccc-
Q psy7829         358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS--TNHIDLIANETIEII-  434 (511)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~--~~~v~~i~~d~~~~l-  434 (511)
                      ..+..++........++.+|||||||+|..+..+++..   .+|+|+|.+++|++.|+++..  ..+++++++|..... 
T Consensus        22 ~~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g---~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~   98 (246)
T d1y8ca_          22 KWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI   98 (246)
T ss_dssp             HHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCC
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhC---CccEeeccchhhhhhccccccccCccceeeccchhhhcc
Confidence            34445545433444567899999999999999999865   689999999999998877654  336888888765432 


Q ss_pred             cccchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829         435 PHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       435 ~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~  477 (511)
                      +..+|.+.+....-..+.+. -..-.+...+++.|+|+|.++.
T Consensus        99 ~~~fD~i~~~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~~i~  140 (246)
T d1y8ca_          99 NRKFDLITCCLDSTNYIIDS-DDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             SCCEEEEEECTTGGGGCCSH-HHHHHHHHHHHTTEEEEEEEEE
T ss_pred             cccccccceeeeeeeccCCH-HHHHHHHHHHHHhCCCCeEEEE
Confidence            33344322110000000000 0001134567788899998774

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.78  E-value=4.2e-09  Score=92.40  Aligned_cols=107  Identities=14%  Similarity=0.157  Sum_probs=74.2

Q ss_pred             HHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc-----cccccccccccccc
Q psy7829         360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST-----NHIDLIANETIEII  434 (511)
Q Consensus       360 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~-----~~v~~i~~d~~~~l  434 (511)
                      ...+++.  +...++.+|||+|||+|.+++.+|+..   .+|+++|+++.++..+++|+..     .+++++.+|..+.+
T Consensus        41 t~lLi~~--l~~~~~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~  115 (194)
T d1dusa_          41 TKILVEN--VVVDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV  115 (194)
T ss_dssp             HHHHHHH--CCCCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC
T ss_pred             HHHHHHh--CCcCCCCeEEEEeecCChhHHHHHhhc---cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhh
Confidence            3345555  788899999999999999999998765   6899999999888888776542     23667777765443


Q ss_pred             c-ccchhhhhcccCCcEEEEEcCCcc---HHHHHHHHHhCCCcEEEEh
Q psy7829         435 P-HILDLCYLNLHRGAKVLEIGSGSG---YLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       435 ~-~~~d~i~~~l~~~~~vLD~~~g~g---~~~~~l~~~l~~~g~v~~~  478 (511)
                      + ..+|.++.+..-       -.+..   .+...+.+.|+|+|.++.+
T Consensus       116 ~~~~fD~Ii~~~p~-------~~~~~~~~~~l~~~~~~LkpgG~l~i~  156 (194)
T d1dusa_         116 KDRKYNKIITNPPI-------RAGKEVLHRIIEEGKELLKDNGEIWVV  156 (194)
T ss_dssp             TTSCEEEEEECCCS-------TTCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccCCceEEEEcccE-------EecchhhhhHHHHHHHhcCcCcEEEEE
Confidence            3 356666654321       11221   1245566788999987654

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=2.4e-08  Score=96.39  Aligned_cols=115  Identities=22%  Similarity=0.265  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc
Q psy7829         118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD  197 (511)
Q Consensus       118 ~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  197 (511)
                      .+...+++.+.  ..++.+|||+.||+|.+++.||+..   .+|+|+|.++++++.|++|++.++     ..|++|+.+|
T Consensus       199 ~l~~~v~~~~~--~~~~~~vlDLycG~G~fsl~La~~~---~~V~gvE~~~~ai~~A~~na~~n~-----i~n~~~~~~~  268 (358)
T d1uwva2         199 KMVARALEWLD--VQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNG-----LQNVTFYHEN  268 (358)
T ss_dssp             HHHHHHHHHHT--CCTTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECC
T ss_pred             HHHHHHHHhhc--cCCCceEEEecccccccchhccccc---cEEEeccCcHHHHHHHHHhHHhcc-----cccceeeecc
Confidence            34445555554  6678899999999999999999875   369999999999999999999874     6799999999


Q ss_pred             CCCCCC----CCCCccEEEecCCCCchHHHHHhh--cccCcEEEEEEccCC
Q psy7829         198 AREGYL----PEAPYDVIYYGGCVSEVPSRVLNQ--LKKGGRILAPIGPMD  242 (511)
Q Consensus       198 ~~~~~~----~~~~fD~I~~~~~~~~~~~~~~~~--LkpgG~l~~~~~~~~  242 (511)
                      ..+...    ....||+|+.+++-....+.+..+  ++|.-.+++++++..
T Consensus       269 ~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~l~~~~~~~ivYVSCnp~T  319 (358)
T d1uwva2         269 LEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPAT  319 (358)
T ss_dssp             TTSCCSSSGGGTTCCSEEEECCCTTCCHHHHHHHHHHCCSEEEEEESCHHH
T ss_pred             hhhhhhhhhhhhccCceEEeCCCCccHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence            875432    236799999998876544322222  367778888776543

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=5.8e-09  Score=96.38  Aligned_cols=94  Identities=19%  Similarity=0.230  Sum_probs=71.0

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccccccc--ccccchhhhhcccC
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEI--IPHILDLCYLNLHR  447 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~--l~~~~d~i~~~l~~  447 (511)
                      ...++.+|||||||+|.++..+++.. |+..++|+|+++++++.++++.  +++.++.+|....  .+..+|.++....+
T Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~~--~~~~~~~~d~~~l~~~~~sfD~v~~~~~~  157 (268)
T d1p91a_          81 LDDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY--PQVTFCVASSHRLPFSDTSMDAIIRIYAP  157 (268)
T ss_dssp             SCTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC--TTSEEEECCTTSCSBCTTCEEEEEEESCC
T ss_pred             cCCCCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhccc--ccccceeeehhhccCCCCCEEEEeecCCH
Confidence            44578899999999999999999886 6789999999999999887764  5677777775432  23445555433221


Q ss_pred             CcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         448 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       448 ~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                                  ....++.+.|+|||.++..
T Consensus       158 ------------~~~~e~~rvLkpgG~l~~~  176 (268)
T d1p91a_         158 ------------CKAEELARVVKPGGWVITA  176 (268)
T ss_dssp             ------------CCHHHHHHHEEEEEEEEEE
T ss_pred             ------------HHHHHHHHHhCCCcEEEEE
Confidence                        1246789999999998876

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1e-08  Score=92.48  Aligned_cols=60  Identities=17%  Similarity=0.034  Sum_probs=50.2

Q ss_pred             CCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc
Q psy7829         355 SSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS  419 (511)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~  419 (511)
                      .++..+..+..+  +.+.++.+|||+|||+|..+..||+..   .+|+|||+++.++++++++.+
T Consensus        29 ~~~~l~~~~~~~--l~~~~~~rvLd~GCG~G~~a~~LA~~G---~~V~gvD~S~~ai~~a~~~~~   88 (229)
T d2bzga1          29 GHQLLKKHLDTF--LKGKSGLRVFFPLCGKAVEMKWFADRG---HSVVGVEISELGIQEFFTEQN   88 (229)
T ss_dssp             CCHHHHHHHHHH--HTTCCSCEEEETTCTTCTHHHHHHHTT---CEEEEECSCHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHh--cCCCCCCEEEEeCCCCcHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHhh
Confidence            456666665565  677899999999999999999999864   799999999999998877655

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.76  E-value=2.7e-09  Score=97.69  Aligned_cols=104  Identities=15%  Similarity=0.175  Sum_probs=68.8

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc--ccccccccccccc-cccchhhhhcc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN--HIDLIANETIEII-PHILDLCYLNL  445 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~--~v~~i~~d~~~~l-~~~~d~i~~~l  445 (511)
                      ...+++.+|||||||+|..+..+++..   .+|+|||++++|++.++++....  +++++++|..... +..+|.++...
T Consensus        37 ~~~~~~~~iLDiGcGtG~~~~~l~~~~---~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I~~~~  113 (251)
T d1wzna1          37 DAKREVRRVLDLACGTGIPTLELAERG---YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFF  113 (251)
T ss_dssp             TCSSCCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECS
T ss_pred             hcCCCCCEEEEeCCCCCccchhhcccc---eEEEEEeeccccccccccccccccccchheehhhhhcccccccchHhhhh
Confidence            466778899999999999999999864   68999999999999988876643  5778888765432 22333322110


Q ss_pred             cCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829         446 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       446 ~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~  477 (511)
                      ..-. .++. ...-.....+++.|+|||.++.
T Consensus       114 ~~~~-~~~~-~~~~~~L~~~~~~LkpgG~lii  143 (251)
T d1wzna1         114 STIM-YFDE-EDLRKLFSKVAEALKPGGVFIT  143 (251)
T ss_dssp             SGGG-GSCH-HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhhh-cCCh-HHHHHHHHHHHHHcCCCcEEEE
Confidence            0000 0000 0011235567888999998865

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=1.2e-08  Score=93.46  Aligned_cols=144  Identities=13%  Similarity=0.181  Sum_probs=92.3

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhh---ccccccccccccc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIAN---ISTNHIDLIANET  430 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~---~~~~~v~~i~~d~  430 (511)
                      |.|...+...+..   ....+.+|||+|||||..++.+|+.. |+.+|+++|+++..++.+++|   .+..+++++.+|.
T Consensus        92 peTE~lv~~~l~~---~~~~~~~vlDlGtGSG~I~i~la~~~-p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~  167 (274)
T d2b3ta1          92 PDTECLVEQALAR---LPEQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDW  167 (274)
T ss_dssp             TTHHHHHHHHHHH---SCSSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCST
T ss_pred             cchhhhhhhHhhh---hcccccceeeeehhhhHHHHHHHhhC-CcceeeeccchhHHHhHHHHHHHHhCcccceeeeccc
Confidence            5677777666664   33456789999999999999999887 789999999997666655554   5567799999997


Q ss_pred             ccccc-ccchhhhhcccC--Cc--------------EEEEEcC-CccH---HHHHHHHHhCCCcEEEEh--HHHHHHHHH
Q psy7829         431 IEIIP-HILDLCYLNLHR--GA--------------KVLEIGS-GSGY---LATLMAHLVGPTGHVTGL--EHMMDIAIE  487 (511)
Q Consensus       431 ~~~l~-~~~d~i~~~l~~--~~--------------~vLD~~~-g~g~---~~~~l~~~l~~~g~v~~~--~~ml~~a~~  487 (511)
                      .+.++ ..||.++.|.+.  ..              ..|+-|. |...   +.....+.|+|+|.++.-  ..-.+...+
T Consensus       168 ~~~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~  247 (274)
T d2b3ta1         168 FSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQ  247 (274)
T ss_dssp             TGGGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHH
T ss_pred             ccccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHH
Confidence            77665 368888777542  10              1111110 1111   223344567888888764  111233344


Q ss_pred             HHHhcCCCceEEEe
Q psy7829         488 SIANISTNHIDLIA  501 (511)
Q Consensus       488 ~~~~~~~~~i~~i~  501 (511)
                      .+.+.|+.+|++++
T Consensus       248 ~l~~~gf~~i~~~k  261 (274)
T d2b3ta1         248 AFILAGYHDVETCR  261 (274)
T ss_dssp             HHHHTTCTTCCEEE
T ss_pred             HHHHCCCCeEEEEE
Confidence            55556665565543

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.73  E-value=2.4e-08  Score=86.30  Aligned_cols=117  Identities=15%  Similarity=0.044  Sum_probs=84.9

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccC
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADA  198 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  198 (511)
                      +...+.+.+...+ .+.+|||+.||||.+++..+.+.  ..+|+.+|.+..+++..++|++..+.   ......+...|.
T Consensus        30 vrealFn~l~~~~-~~~~vLDlFaGsG~~glEalSRG--A~~v~fVE~~~~a~~~ik~Ni~~l~~---~~~~~~~~~~d~  103 (183)
T d2ifta1          30 VKETLFNWLMPYI-HQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQTLKC---SSEQAEVINQSS  103 (183)
T ss_dssp             HHHHHHHHHHHHH-TTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTC---CTTTEEEECSCH
T ss_pred             HHHHHHHHhhhhc-ccceEeecccCccceeeeeeeec--ceeeEEeecccchhhhHhhHHhhhcc---cccccccccccc
Confidence            3444555554222 67899999999999999999885  45899999999999999999998641   233467777765


Q ss_pred             CC---CCCCCCCccEEEecCCCCch-----HHHHH--hhcccCcEEEEEEccC
Q psy7829         199 RE---GYLPEAPYDVIYYGGCVSEV-----PSRVL--NQLKKGGRILAPIGPM  241 (511)
Q Consensus       199 ~~---~~~~~~~fD~I~~~~~~~~~-----~~~~~--~~LkpgG~l~~~~~~~  241 (511)
                      ..   ......+||+|++++|+..-     +..+.  .+|+++|.+++.....
T Consensus       104 ~~~l~~~~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE~~~~  156 (183)
T d2ifta1         104 LDFLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKD  156 (183)
T ss_dssp             HHHTTSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             cccccccccCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEEEecCC
Confidence            42   12233579999999998542     23343  4689999999976543

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.73  E-value=2.6e-08  Score=94.84  Aligned_cols=102  Identities=17%  Similarity=0.165  Sum_probs=79.8

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhC----CCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCC
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVG----PTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEA  206 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~----~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  206 (511)
                      .+++.+|||.|||+|.+...+.+.+.    ...+++|+|+++.++..|+.++...+      .+..+.++|...... ..
T Consensus       115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~~-~~  187 (328)
T d2f8la1         115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR------QKMTLLHQDGLANLL-VD  187 (328)
T ss_dssp             TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT------CCCEEEESCTTSCCC-CC
T ss_pred             CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh------hhhhhhccccccccc-cc
Confidence            45678999999999999988876542    34579999999999999999887643      356788888765433 47


Q ss_pred             CccEEEecCCCCc------------------------hHHHHHhhcccCcEEEEEEc
Q psy7829         207 PYDVIYYGGCVSE------------------------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       207 ~fD~I~~~~~~~~------------------------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      +||+|++++|+..                        +...+.+.|+|||++++.+.
T Consensus       188 ~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p  244 (328)
T d2f8la1         188 PVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP  244 (328)
T ss_dssp             CEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence            8999999999721                        23678899999999887654

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.73  E-value=4.3e-09  Score=93.85  Aligned_cols=108  Identities=16%  Similarity=0.253  Sum_probs=77.3

Q ss_pred             HHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----ccccccccccccccccc
Q psy7829         361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETIEIIPH  436 (511)
Q Consensus       361 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~~~l~~  436 (511)
                      ++++.. .+......+||||||++||.|+++|+.++++++|+++|.+++.++.+++++.    .+.++++.+++.+.++.
T Consensus        48 g~~L~~-L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~  126 (227)
T d1susa1          48 GQFLSM-LLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDE  126 (227)
T ss_dssp             HHHHHH-HHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHH
T ss_pred             HHHHHH-HHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHH
Confidence            344443 2455678999999999999999999999778999999999888887777664    34588889988777664


Q ss_pred             c---------chhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829         437 I---------LDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       437 ~---------~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~  477 (511)
                      .         ||.++.+..+...        -.....+.+.++|||-++.
T Consensus       127 l~~~~~~~~~fD~iFiDa~k~~y--------~~~~e~~~~ll~~gGiii~  168 (227)
T d1susa1         127 MIKDEKNHGSYDFIFVDADKDNY--------LNYHKRLIDLVKVGGVIGY  168 (227)
T ss_dssp             HHHCGGGTTCBSEEEECSCSTTH--------HHHHHHHHHHBCTTCCEEE
T ss_pred             HHhccccCCceeEEEeccchhhh--------HHHHHHHHhhcCCCcEEEE
Confidence            3         5555544333221        1233455678899887765

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=2.6e-09  Score=94.90  Aligned_cols=112  Identities=19%  Similarity=0.210  Sum_probs=78.1

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----cccccccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETI  431 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~  431 (511)
                      +|.. .+++.. .......++|||||||+||.|+++|+.+.++++|+++|++++.++.+++++.    .+.++++.+++.
T Consensus        44 ~~~~-g~lL~~-L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~  121 (219)
T d2avda1          44 TCEQ-AQLLAN-LARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPAL  121 (219)
T ss_dssp             CHHH-HHHHHH-HHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHH
T ss_pred             CHHH-HHHHHH-HHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehh
Confidence            3444 455554 2456778999999999999999999998778999999999888887777664    344788888877


Q ss_pred             ccccc--------cchhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829         432 EIIPH--------ILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       432 ~~l~~--------~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~  477 (511)
                      +.++.        .+|.++.+..+...        -.....+.+.++|||-++.
T Consensus       122 e~l~~~~~~~~~~~fD~ifiD~dk~~y--------~~~~~~~~~lL~~GGvii~  167 (219)
T d2avda1         122 ETLDELLAAGEAGTFDVAVVDADKENC--------SAYYERCLQLLRPGGILAV  167 (219)
T ss_dssp             HHHHHHHHTTCTTCEEEEEECSCSTTH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             hcchhhhhhcccCCccEEEEeCCHHHH--------HHHHHHHHHHhcCCcEEEE
Confidence            76643        34444443333221        1223456678888777654

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.72  E-value=4.5e-09  Score=97.90  Aligned_cols=105  Identities=16%  Similarity=0.270  Sum_probs=73.8

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc--cccccccccccc-ccccchhhhhcc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN--HIDLIANETIEI-IPHILDLCYLNL  445 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~--~v~~i~~d~~~~-l~~~~d~i~~~l  445 (511)
                      ..+.++.+|||||||+|..+..+++.++++.+|+|+|+++.+++.++++....  +++++.+|..+. .+..+|.++...
T Consensus        23 ~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD~v~~~~  102 (281)
T d2gh1a1          23 WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHA  102 (281)
T ss_dssp             SCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEES
T ss_pred             hccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCceEEEEeh
Confidence            35678899999999999999999988755689999999999999988876633  577777775442 123355443321


Q ss_pred             cCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         446 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       446 ~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .     +..--.+-.+...+.+.|+|||.++..
T Consensus       103 ~-----l~~~~d~~~~l~~~~~~LkpgG~lii~  130 (281)
T d2gh1a1         103 F-----LLHMTTPETMLQKMIHSVKKGGKIICF  130 (281)
T ss_dssp             C-----GGGCSSHHHHHHHHHHTEEEEEEEEEE
T ss_pred             h-----hhcCCCHHHHHHHHHHHcCcCcEEEEE
Confidence            0     100112334567788889999988754

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.72  E-value=9.3e-09  Score=99.25  Aligned_cols=64  Identities=22%  Similarity=0.276  Sum_probs=55.2

Q ss_pred             CCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc
Q psy7829         353 GPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS  419 (511)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~  419 (511)
                      |...+..+..++..  +.++++++|||||||+|..++.+|+..+ ..+|+|||+++.+++.|.++..
T Consensus       198 GEl~~~~i~~Il~~--l~Lkpgd~fLDLGCG~G~~vl~aA~~~g-~~~v~GIDiS~~~i~~Ak~~~~  261 (406)
T d1u2za_         198 GELLPNFLSDVYQQ--CQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYE  261 (406)
T ss_dssp             CCBCHHHHHHHHHH--TTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHH--hCCCCCCEEEeCCCCCcHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHH
Confidence            35567778899998  8999999999999999999999999884 3689999999999888776654

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.70  E-value=2.8e-08  Score=89.10  Aligned_cols=101  Identities=14%  Similarity=0.185  Sum_probs=75.5

Q ss_pred             hhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEE
Q psy7829         116 APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE  195 (511)
Q Consensus       116 ~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  195 (511)
                      .+.+...+++.+.  +.++++|||||||+|.+|..+++..   .+|+++|+++.+++.++++...       .+|++++.
T Consensus         6 d~~i~~~iv~~~~--~~~~d~VlEIGpG~G~LT~~Ll~~~---~~v~avE~D~~l~~~l~~~~~~-------~~n~~i~~   73 (235)
T d1qama_           6 SKHNIDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVD-------HDNFQVLN   73 (235)
T ss_dssp             CHHHHHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTT-------CCSEEEEC
T ss_pred             CHHHHHHHHHhcC--CCCCCeEEEECCCchHHHHHHHhCc---CceEEEeeccchHHHHHHHhhc-------ccchhhhh
Confidence            3446666777665  7799999999999999999999874   3699999999999999988654       45899999


Q ss_pred             ccCCCCCCCCCCccEEEecCCCCchHHHHHhhc
Q psy7829         196 ADAREGYLPEAPYDVIYYGGCVSEVPSRVLNQL  228 (511)
Q Consensus       196 ~d~~~~~~~~~~fD~I~~~~~~~~~~~~~~~~L  228 (511)
                      +|+.+...+......|+++.++.--..-+.++|
T Consensus        74 ~D~l~~~~~~~~~~~vv~NLPYnIss~il~~ll  106 (235)
T d1qama_          74 KDILQFKFPKNQSYKIFGNIPYNISTDIIRKIV  106 (235)
T ss_dssp             CCGGGCCCCSSCCCEEEEECCGGGHHHHHHHHH
T ss_pred             hhhhhccccccccceeeeeehhhhhHHHHHHHH
Confidence            999864333334456778877743333333333

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.69  E-value=1.3e-08  Score=95.42  Aligned_cols=108  Identities=25%  Similarity=0.259  Sum_probs=82.7

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCcc
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYD  209 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD  209 (511)
                      .+...+||.||.|.|..+..+++.. +..+|+++|+++.+++.|++.+...+.+.+..++++++.+|+.+... ...+||
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD  153 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD  153 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcC-CcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCccc
Confidence            3467899999999999999988764 66799999999999999999875422111346789999999875321 236799


Q ss_pred             EEEecCCC-------------CchHHHHHhhcccCcEEEEEEc
Q psy7829         210 VIYYGGCV-------------SEVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       210 ~I~~~~~~-------------~~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      +|+++..-             ..+.+.+++.|+|||.+++-.+
T Consensus       154 vIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~  196 (312)
T d1uira_         154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG  196 (312)
T ss_dssp             EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecC
Confidence            99987531             1234789999999999998554

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=2.9e-09  Score=96.05  Aligned_cols=99  Identities=15%  Similarity=0.093  Sum_probs=64.9

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc--ccccccccccccccc----ccchhhh
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST--NHIDLIANETIEIIP----HILDLCY  442 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~--~~v~~i~~d~~~~l~----~~~d~i~  442 (511)
                      ....+|.+|||||||+|+.+..+++.. + .+|++||+++.+++.++++...  .++.++..++.....    ..+|.++
T Consensus        49 ~~~~~g~~VLdIGcG~G~~a~~~a~~~-~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~  126 (229)
T d1zx0a1          49 AASSKGGRVLEVGFGMAIAASKVQEAP-I-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGIL  126 (229)
T ss_dssp             HHTTTCEEEEEECCTTSHHHHHHHTSC-E-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred             hhccCCCeEEEeeccchHHHHHHHHcC-C-CeEEEeCCCHHHHHHHHHHhhhccccccccccccccccccccccccccee
Confidence            344689999999999999999998764 2 6899999999999998887763  334444444322221    2233322


Q ss_pred             hcccCCcEEEEEcCCc---------cHHHHHHHHHhCCCcEEEEh
Q psy7829         443 LNLHRGAKVLEIGSGS---------GYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       443 ~~l~~~~~vLD~~~g~---------g~~~~~l~~~l~~~g~v~~~  478 (511)
                               .|.....         -.+...+.+.|+|||.++..
T Consensus       127 ---------fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         127 ---------YDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             ---------ECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ---------ecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence                     2221111         11344577889999988753

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.66  E-value=3e-08  Score=89.62  Aligned_cols=90  Identities=19%  Similarity=0.230  Sum_probs=72.6

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEE
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVI  211 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I  211 (511)
                      ....+|||||||+|.++..+++++ |+.+++..|+ |+.++       ...    ..++++++.+|+.+..+   ..|++
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~-------~~~----~~~ri~~~~gd~~~~~p---~~D~~  143 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIE-------NAP----PLSGIEHVGGDMFASVP---QGDAM  143 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHT-------TCC----CCTTEEEEECCTTTCCC---CEEEE
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEecc-hhhhh-------ccC----CCCCeEEecCCcccccc---cceEE
Confidence            445789999999999999999998 8999999998 54433       221    35689999999976543   35999


Q ss_pred             EecCCCCch--------HHHHHhhcccCcEEEEE
Q psy7829         212 YYGGCVSEV--------PSRVLNQLKKGGRILAP  237 (511)
Q Consensus       212 ~~~~~~~~~--------~~~~~~~LkpgG~l~~~  237 (511)
                      ++...++..        ++++++.|+|||++++.
T Consensus       144 ~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~  177 (244)
T d1fp1d2         144 ILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIV  177 (244)
T ss_dssp             EEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            998888653        47899999999999884

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.66  E-value=8.3e-09  Score=94.48  Aligned_cols=102  Identities=14%  Similarity=0.089  Sum_probs=67.9

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----cccccccccccccc---ccccchhhh
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETIEI---IPHILDLCY  442 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~~~---l~~~~d~i~  442 (511)
                      -++++.+|||||||+|..+..+++...  ++|+|||+++++++.|+++..    ..++.++++|....   ....+|.+.
T Consensus        21 ~~~~~~~VLDlGCG~G~~~~~~~~~~~--~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~   98 (252)
T d1ri5a_          21 YTKRGDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVIS   98 (252)
T ss_dssp             HCCTTCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEE
T ss_pred             hCCCcCEEEEecccCcHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEE
Confidence            467899999999999999999987642  689999999999998876643    23577777775332   122344332


Q ss_pred             hcccCCcEEEEEcCCc----cHHHHHHHHHhCCCcEEEEh
Q psy7829         443 LNLHRGAKVLEIGSGS----GYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       443 ~~l~~~~~vLD~~~g~----g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ....-.     ..+.+    -.+...+.+.|+|||.+++.
T Consensus        99 ~~~~l~-----~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          99 SQFSFH-----YAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             EESCGG-----GGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             Ecceee-----ecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            211000     00111    12345567888999998876

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.65  E-value=3.7e-08  Score=86.35  Aligned_cols=91  Identities=20%  Similarity=0.223  Sum_probs=64.2

Q ss_pred             CCCHHHHHHHHHHhh-cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccc--cccccccc
Q psy7829         354 PSSERSIAHILDLCY-LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH--IDLIANET  430 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~-~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~--v~~i~~d~  430 (511)
                      ++++..+.+++..+. ..--.|.+|||+|||||.+++.++... + .+|+++|+++.+++.+.+|+...+  .+++.+|.
T Consensus        26 ~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g-~-~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~  103 (201)
T d1wy7a1          26 RTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLG-A-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDV  103 (201)
T ss_dssp             CCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTT-C-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCG
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcC-C-CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECch
Confidence            345566666655422 233468999999999999999887653 3 699999999999998888876433  45666665


Q ss_pred             cccccccchhhhhcccC
Q psy7829         431 IEIIPHILDLCYLNLHR  447 (511)
Q Consensus       431 ~~~l~~~~d~i~~~l~~  447 (511)
                      .+ ++..+|.++.|.+-
T Consensus       104 ~~-~~~~fD~Vi~nPP~  119 (201)
T d1wy7a1         104 SE-FNSRVDIVIMNPPF  119 (201)
T ss_dssp             GG-CCCCCSEEEECCCC
T ss_pred             hh-hCCcCcEEEEcCcc
Confidence            54 45567777666543

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.63  E-value=1.4e-08  Score=92.38  Aligned_cols=99  Identities=12%  Similarity=0.141  Sum_probs=64.3

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccccccc--ccccchhhhhcccC
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEI--IPHILDLCYLNLHR  447 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~--l~~~~d~i~~~l~~  447 (511)
                      .++++.+|||+|||+|..+..+++..   .+|+|+|+++++++.+.++....   ++.++..+.  .+..+|.++.... 
T Consensus        39 ~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~l~~a~~~~~~~---~~~~~~~~l~~~~~~fD~ii~~~~-  111 (246)
T d2avna1          39 YLKNPCRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLEVAREKGVKN---VVEAKAEDLPFPSGAFEAVLALGD-  111 (246)
T ss_dssp             HCCSCCEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHHTCSC---EEECCTTSCCSCTTCEEEEEECSS-
T ss_pred             hcCCCCEEEEECCCCchhcccccccc---eEEEEeecccccccccccccccc---cccccccccccccccccceeeecc-
Confidence            45678899999999999999998764   79999999999999988875322   333443221  1233443321100 


Q ss_pred             CcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         448 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       448 ~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                         ++..-..+-.+...+.+.|+|||.++..
T Consensus       112 ---~~~~~~d~~~~l~~i~r~Lk~gG~~ii~  139 (246)
T d2avna1         112 ---VLSYVENKDKAFSEIRRVLVPDGLLIAT  139 (246)
T ss_dssp             ---HHHHCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---hhhhhhhHHHHHHHHHhhcCcCcEEEEE
Confidence               0000112334456788999999988764

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=5.7e-08  Score=92.12  Aligned_cols=116  Identities=15%  Similarity=0.088  Sum_probs=80.3

Q ss_pred             CCCCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc------------
Q psy7829         351 DNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI------------  418 (511)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~------------  418 (511)
                      ..|..++..+..++..  +.++++++|||+|||+|..++.+|+.. +..+++|||+++++++.+.++.            
T Consensus       131 ~~~e~~~~~~~~~~~~--~~l~~~~~vlD~GcG~G~~~~~~a~~~-~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~  207 (328)
T d1nw3a_         131 VYGETSFDLVAQMIDE--IKMTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGK  207 (328)
T ss_dssp             CCCCCCHHHHHHHHHH--SCCCTTCEEEEETCTTSHHHHHHHHHC-CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             chhhhHHHHHHHHHHH--cCCCCCCEEEEcCCCCCHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccc
Confidence            3456788888899987  889999999999999999999999887 4468999999988887665442            


Q ss_pred             cccccccccccccccc--cccch--hhhhcccCCcEEEEEcCCccH---HHHHHHHHhCCCcEEEEh
Q psy7829         419 STNHIDLIANETIEII--PHILD--LCYLNLHRGAKVLEIGSGSGY---LATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       419 ~~~~v~~i~~d~~~~l--~~~~d--~i~~~l~~~~~vLD~~~g~g~---~~~~l~~~l~~~g~v~~~  478 (511)
                      ...+++++++|....-  +..++  .++.+.         -+-...   ....+.+.+||||+|+..
T Consensus       208 ~~~~i~~~~gd~~~~~~~~~~~~advi~~~~---------~~f~~~~~~~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         208 KHAEYTLERGDFLSEEWRERIANTSVIFVNN---------FAFGPEVDHQLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             CCCCEEEEECCTTSHHHHHHHHHCSEEEECC---------TTTCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             cCCceEEEECcccccccccccCcceEEEEcc---------eecchHHHHHHHHHHHhCCCCcEEEEe
Confidence            2456888888864421  11121  111110         011112   234566778999999876

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.63  E-value=2.8e-08  Score=90.71  Aligned_cols=114  Identities=11%  Similarity=0.005  Sum_probs=77.1

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc----ccccccccccccccc-cchhhhhc
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN----HIDLIANETIEIIPH-ILDLCYLN  444 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~----~v~~i~~d~~~~l~~-~~d~i~~~  444 (511)
                      .+++|++|||+|||+|++++.+|+..+  ++|+++|++++.++.+.+|+..+    +++++++|+.+..+. .+|.+.++
T Consensus       104 ~~~~g~~VlD~~aG~G~~~l~~a~~~~--~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~  181 (260)
T d2frna1         104 VAKPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMG  181 (260)
T ss_dssp             HCCTTCEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEEC
T ss_pred             hcCCccEEEECcceEcHHHHHHHHhCC--cEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEEC
Confidence            357899999999999999999998753  79999999998888777776533    377888887665432 34444333


Q ss_pred             ccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE--h-------HHHHHHHHHHHHhcCC
Q psy7829         445 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG--L-------EHMMDIAIESIANIST  494 (511)
Q Consensus       445 l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~--~-------~~ml~~a~~~~~~~~~  494 (511)
                               ...+.-.+.....+.+++||.+..  +       ....+..++.....+.
T Consensus       182 ---------~p~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~  231 (260)
T d2frna1         182 ---------YVVRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGY  231 (260)
T ss_dssp             ---------CCSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTC
T ss_pred             ---------CCCchHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCC
Confidence                     333333444556677888887632  2       2234455555555554

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.62  E-value=1.4e-07  Score=82.17  Aligned_cols=105  Identities=20%  Similarity=0.272  Sum_probs=69.1

Q ss_pred             CCCCEEEEEcCCccHH----HHHHHHHhC---CCceEEEEeCCHHHHHHHHHHH------------------hccCCCc-
Q psy7829         132 VDGAKVLDLGSGSGYQ----TCVFAHMVG---PTGKVIGVEHIPELIEASLRNI------------------SKGNKDL-  185 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~----~~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~------------------~~~~~~~-  185 (511)
                      .+..+||++|||+|.-    ++.+.+...   ...+++|+|+++.+++.|++..                  .+.+... 
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            3456999999999974    333444322   2357999999999999998421                  1111000 


Q ss_pred             -------CCCCCeEEEEccCCCC-CCCCCCccEEEecCCCCc--------hHHHHHhhcccCcEEEE
Q psy7829         186 -------LDSGRVRIVEADAREG-YLPEAPYDVIYYGGCVSE--------VPSRVLNQLKKGGRILA  236 (511)
Q Consensus       186 -------~~~~~v~~~~~d~~~~-~~~~~~fD~I~~~~~~~~--------~~~~~~~~LkpgG~l~~  236 (511)
                             .....+++...+.... +...+.||+|+|-+++..        +.+++.+.|+|||.|++
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~l  169 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA  169 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEE
Confidence                   0012355666666543 233478999999988843        34788999999999886

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.62  E-value=3.2e-08  Score=88.57  Aligned_cols=105  Identities=18%  Similarity=0.188  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc
Q psy7829         118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD  197 (511)
Q Consensus       118 ~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  197 (511)
                      .+...|++++.  ..++.+|||.|||+|.+...+.+.......++|+|+++.++..              ..+..++++|
T Consensus         6 ~i~~~m~~l~~--~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~--------------~~~~~~~~~~   69 (223)
T d2ih2a1           6 EVVDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL--------------PPWAEGILAD   69 (223)
T ss_dssp             HHHHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC--------------CTTEEEEESC
T ss_pred             HHHHHHHHhcC--CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh--------------cccceeeeee
Confidence            35666777765  6788999999999999998888877667789999999865432              2245778888


Q ss_pred             CCCCCCCCCCccEEEecCCCCc-----------------------------------hHHHHHhhcccCcEEEEEEc
Q psy7829         198 AREGYLPEAPYDVIYYGGCVSE-----------------------------------VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       198 ~~~~~~~~~~fD~I~~~~~~~~-----------------------------------~~~~~~~~LkpgG~l~~~~~  239 (511)
                      ..... ....||+|+++.++..                                   +.....+.|+|||++++.+.
T Consensus        70 ~~~~~-~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p  145 (223)
T d2ih2a1          70 FLLWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP  145 (223)
T ss_dssp             GGGCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhccc-cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence            76533 3478999999988621                                   12467789999999988664

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.59  E-value=5.3e-08  Score=89.63  Aligned_cols=108  Identities=21%  Similarity=0.158  Sum_probs=81.3

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCC-----CcCCCCCeEEEEccCCCCCCCC
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNK-----DLLDSGRVRIVEADAREGYLPE  205 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-----~~~~~~~v~~~~~d~~~~~~~~  205 (511)
                      ..+..+||.+|+|.|..+..+.+.  +..+|+.+|+++.+++.|++.+.....     .....++++++.+|+.......
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~--~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~  147 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNN  147 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHC
T ss_pred             CCCCceEEEecCCchHHHHHHHHh--CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhcc
Confidence            456789999999999999888774  346899999999999999987643210     0013578999999987433334


Q ss_pred             CCccEEEecCCCC----------chHHHHHhhcccCcEEEEEEcc
Q psy7829         206 APYDVIYYGGCVS----------EVPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       206 ~~fD~I~~~~~~~----------~~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      ++||+|+++..-+          .+.+.+.+.|+|||.+++-.+.
T Consensus       148 ~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s  192 (276)
T d1mjfa_         148 RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS  192 (276)
T ss_dssp             CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCC
Confidence            6799999875542          2347899999999999886543

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.57  E-value=3.9e-08  Score=92.00  Aligned_cols=55  Identities=20%  Similarity=0.231  Sum_probs=44.5

Q ss_pred             HHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc
Q psy7829         360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS  419 (511)
Q Consensus       360 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~  419 (511)
                      ...++..  +..+++.+|||+|||+|..+..||+..   .+|+|+|++++|++.|+++..
T Consensus        45 ~~~l~~~--l~~~~~~~vLD~GcG~G~~~~~la~~g---~~v~gvD~S~~ml~~A~~~~~   99 (292)
T d1xvaa_          45 KAWLLGL--LRQHGCHRVLDVACGTGVDSIMLVEEG---FSVTSVDASDKMLKYALKERW   99 (292)
T ss_dssp             HHHHHHH--HHHTTCCEEEESSCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHH--hhhcCCCEEEEecCCCcHHHHHHHHcC---CeeeeccCchHHHHHHHHHHH
Confidence            3444444  455678899999999999999999763   689999999999998877654

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.55  E-value=3.6e-08  Score=85.43  Aligned_cols=114  Identities=12%  Similarity=0.224  Sum_probs=79.7

Q ss_pred             HHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc--ccccccccccccccccc
Q psy7829         360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST--NHIDLIANETIEIIPHI  437 (511)
Q Consensus       360 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~--~~v~~i~~d~~~~l~~~  437 (511)
                      ...++..  +.+.++.++||++||+|..+..+++.+ |+++|+|+|+++++++.+.+++..  .++.+++++..+ +...
T Consensus        12 l~evi~~--l~~~~~~~~lD~t~G~Gghs~~il~~~-~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~-~~~~   87 (192)
T d1m6ya2          12 VREVIEF--LKPEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYRE-ADFL   87 (192)
T ss_dssp             HHHHHHH--HCCCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGG-HHHH
T ss_pred             HHHHHHh--hCCCCCCEEEEecCCCcHHHHHHHhcC-CCCeEEEeechHHHHHHHHHhhccccccccchhHHHhh-HHHH
Confidence            3445666  788999999999999999999999998 789999999999999999887763  356666654322 1111


Q ss_pred             chhhhhcccCCcEEEEEcCCccHH-------------HHHHHHHhCCCcEEEEh
Q psy7829         438 LDLCYLNLHRGAKVLEIGSGSGYL-------------ATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       438 ~d~i~~~l~~~~~vLD~~~g~g~~-------------~~~l~~~l~~~g~v~~~  478 (511)
                      ... +..-+-++.++|+||.+-.+             .....+.++|+|+++.+
T Consensus        88 ~~~-~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii  140 (192)
T d1m6ya2          88 LKT-LGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVI  140 (192)
T ss_dssp             HHH-TTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEE
T ss_pred             HHH-cCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeee
Confidence            110 00113456789999954211             22344567899998777

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.55  E-value=8.8e-08  Score=85.76  Aligned_cols=73  Identities=18%  Similarity=0.370  Sum_probs=62.8

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-cccccccccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNHIDLIANETIEI  433 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~~  433 (511)
                      .+..+.+++..  +.+.++++|||||||+|.+|..+++..   .+|++||+|..++....++.. .+|++++++|.++.
T Consensus         6 d~~i~~~iv~~--~~~~~~d~VlEIGpG~G~LT~~Ll~~~---~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~   79 (235)
T d1qama_           6 SKHNIDKIMTN--IRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQF   79 (235)
T ss_dssp             CHHHHHHHHTT--CCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGC
T ss_pred             CHHHHHHHHHh--cCCCCCCeEEEECCCchHHHHHHHhCc---CceEEEeeccchHHHHHHHhhcccchhhhhhhhhhc
Confidence            34667777887  788999999999999999999999875   799999999999998777654 68899999998764

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=2.4e-07  Score=80.79  Aligned_cols=101  Identities=17%  Similarity=0.237  Sum_probs=83.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY  212 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~  212 (511)
                      ++.+|+|+|||.|.-++.+|-.. |+.+++.+|.+..-+...++-....     +.+|+++++..+++.. ...+||+|+
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~-p~~~~~Lves~~KK~~FL~~~~~~L-----~L~nv~v~~~R~E~~~-~~~~fD~V~  137 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHEL-----KLENIEPVQSRVEEFP-SEPPFDGVI  137 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHT-----TCSSEEEEECCTTTSC-CCSCEEEEE
T ss_pred             cCCceeeeeccCCceeeehhhhc-ccceEEEEecchHHHHHHHHHHHHc-----CCcceeeeccchhhhc-cccccceeh
Confidence            56799999999999999999876 8899999999999999999888874     4679999999988643 346899999


Q ss_pred             ecCCCC--chHHHHHhhcccCcEEEEEEcc
Q psy7829         213 YGGCVS--EVPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       213 ~~~~~~--~~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      +-+..+  .+..-+...++++|.+++.-+.
T Consensus       138 sRA~~~~~~ll~~~~~~l~~~g~~~~~KG~  167 (207)
T d1jsxa_         138 SRAFASLNDMVSWCHHLPGEQGRFYALKGQ  167 (207)
T ss_dssp             CSCSSSHHHHHHHHTTSEEEEEEEEEEESS
T ss_pred             hhhhcCHHHHHHHHHHhcCCCcEEEEECCC
Confidence            876543  3456778889999999987653

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.54  E-value=2.7e-08  Score=91.02  Aligned_cols=109  Identities=18%  Similarity=0.208  Sum_probs=71.2

Q ss_pred             HHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----cccccccccccccccccc
Q psy7829         362 HILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETIEIIPHI  437 (511)
Q Consensus       362 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~~~l~~~  437 (511)
                      .++..  ++..+..+|||||||+|..++.+++.. |+.+++++|+ ++++..+++++.    ..+++++.+|..+..+..
T Consensus        71 ~~~~~--~d~~~~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~  146 (253)
T d1tw3a2          71 APAAA--YDWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRK  146 (253)
T ss_dssp             HHHHH--SCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSC
T ss_pred             HHHhh--cCCccCCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhcccc
Confidence            44444  677888999999999999999999988 7799999997 445555544433    356888888766555544


Q ss_pred             chhhhhcccCCcEEEEEcCC-ccHHHHHHHHHhCCCcEEEEh
Q psy7829         438 LDLCYLNLHRGAKVLEIGSG-SGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       438 ~d~i~~~l~~~~~vLD~~~g-~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +|.++...--.    ++.-. .-.+...+++.|+|||+++..
T Consensus       147 ~D~v~~~~vlh----~~~d~~~~~~L~~~~~~LkPGG~l~i~  184 (253)
T d1tw3a2         147 ADAIILSFVLL----NWPDHDAVRILTRCAEALEPGGRILIH  184 (253)
T ss_dssp             EEEEEEESCGG----GSCHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             hhheeeccccc----cCCchhhHHHHHHHHHhcCCCcEEEEE
Confidence            55443221000    00000 012356677888999988764

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.8e-08  Score=90.22  Aligned_cols=101  Identities=11%  Similarity=0.128  Sum_probs=68.5

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccccccc--cccchhhhhc
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEII--PHILDLCYLN  444 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~l--~~~~d~i~~~  444 (511)
                      ...++.+|||||||+|..+..++...+  .+|+++|+++++++.|++++.   ..+++++++|..+..  +..+|.++..
T Consensus        57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~  134 (222)
T d2ex4a1          57 NKTGTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQ  134 (222)
T ss_dssp             -CCCCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEE
T ss_pred             CCCCCCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            345678999999999999998765553  689999999999999888765   445778888765532  2344444331


Q ss_pred             ccCCcEEEEEcCCc---cHHHHHHHHHhCCCcEEEEh
Q psy7829         445 LHRGAKVLEIGSGS---GYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       445 l~~~~~vLD~~~g~---g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..     +. ....   ..+...+++.|+|+|.++..
T Consensus       135 ~~-----l~-h~~~~~~~~~l~~i~~~Lk~~G~~~i~  165 (222)
T d2ex4a1         135 WV-----IG-HLTDQHLAEFLRRCKGSLRPNGIIVIK  165 (222)
T ss_dssp             SC-----GG-GSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cc-----cc-cchhhhhhhHHHHHHHhcCCcceEEEE
Confidence            10     00 0111   13456778889999988764

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.50  E-value=1.3e-07  Score=82.89  Aligned_cols=97  Identities=12%  Similarity=0.010  Sum_probs=62.1

Q ss_pred             CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccccccc-ccccchhhhhcccCC
Q psy7829         373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEI-IPHILDLCYLNLHRG  448 (511)
Q Consensus       373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~-l~~~~d~i~~~l~~~  448 (511)
                      .+.+|||||||+|..+..+++..   .+|+|+|+++++++.+.++..   .+++++...|.... .+..+|.++....-.
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~g---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~~  106 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAANG---YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMM  106 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCGG
T ss_pred             CCCcEEEECCCCCHHHHHHHHHh---hhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeeee
Confidence            44599999999999999999875   799999999988887665544   45566555553332 233444433211000


Q ss_pred             cEEEEEcCCcc---HHHHHHHHHhCCCcEEEEh
Q psy7829         449 AKVLEIGSGSG---YLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       449 ~~vLD~~~g~g---~~~~~l~~~l~~~g~v~~~  478 (511)
                            .....   .+...+.+.|+|+|.++..
T Consensus       107 ------~~~~~~~~~~l~~~~~~L~pgG~~~~~  133 (198)
T d2i6ga1         107 ------FLEAQTIPGLIANMQRCTKPGGYNLIV  133 (198)
T ss_dssp             ------GSCTTHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ------cCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence                  00111   2445666778999987765

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.50  E-value=1e-07  Score=89.70  Aligned_cols=116  Identities=14%  Similarity=0.211  Sum_probs=77.6

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---cccccccccccccccc------ccchhhh
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEIIP------HILDLCY  442 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~l~------~~~d~i~  442 (511)
                      ..|++|||++||+|.+++.+|...   .+|+++|+++.+++.+++|+.   ..+++++++|..+.+.      ..||.++
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g~---~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi  220 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVV  220 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             hCCCeeeccCCCCcHHHHHHHhcC---CcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEE
Confidence            469999999999999999988643   799999999888887776655   5567788887665433      2345444


Q ss_pred             hcccCCcEEEEEcC---Ccc----------HHHHHHHHHhCCCcEEEEh--------HHHHHHHHHHHHhcCCCceEEE
Q psy7829         443 LNLHRGAKVLEIGS---GSG----------YLATLMAHLVGPTGHVTGL--------EHMMDIAIESIANISTNHIDLI  500 (511)
Q Consensus       443 ~~l~~~~~vLD~~~---g~g----------~~~~~l~~~l~~~g~v~~~--------~~ml~~a~~~~~~~~~~~i~~i  500 (511)
                      .         |..|   +..          .+.....+.++|||.++..        +.+.+...+.+...+. +++++
T Consensus       221 ~---------DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~-~~~~~  289 (318)
T d1wxxa2         221 L---------DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHR-LLRVV  289 (318)
T ss_dssp             E---------CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred             E---------cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCC-CEEEE
Confidence            4         4433   111          1233455678999998764        4555555555555553 44443

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.50  E-value=4.1e-08  Score=86.91  Aligned_cols=77  Identities=23%  Similarity=0.385  Sum_probs=59.6

Q ss_pred             HHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c-ccccccccccccccc
Q psy7829         360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T-NHIDLIANETIEIIP  435 (511)
Q Consensus       360 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~-~~v~~i~~d~~~~l~  435 (511)
                      ..+++.. .+......+|||||||+|+.|+++|+.++++++|+++|+++++++.+++++.   . ++|+++.++..+.++
T Consensus        44 ~G~lL~~-lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~  122 (214)
T d2cl5a1          44 KGQIMDA-VIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIP  122 (214)
T ss_dssp             HHHHHHH-HHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGG
T ss_pred             HHHHHHH-HHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecccccccc
Confidence            3344443 2344567899999999999999999988778999999999888887776554   3 458899999877766


Q ss_pred             cc
Q psy7829         436 HI  437 (511)
Q Consensus       436 ~~  437 (511)
                      ..
T Consensus       123 ~l  124 (214)
T d2cl5a1         123 QL  124 (214)
T ss_dssp             GH
T ss_pred             ch
Confidence            43

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.49  E-value=7e-09  Score=93.59  Aligned_cols=100  Identities=17%  Similarity=0.196  Sum_probs=77.3

Q ss_pred             chhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEE
Q psy7829         115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIV  194 (511)
Q Consensus       115 ~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~  194 (511)
                      ..+.+...+++.+.  +.++++|||||||+|.+|..+++..   .+|+++|+++.+++.+++++..       .+|++++
T Consensus        13 ~d~~ii~kIv~~~~--~~~~d~VLEIGpG~G~LT~~L~~~~---~~v~aIE~D~~l~~~l~~~~~~-------~~n~~ii   80 (245)
T d1yuba_          13 TSEKVLNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKL-------NTRVTLI   80 (245)
T ss_dssp             CCTTTHHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTT-------CSEEEEC
T ss_pred             CCHHHHHHHHHhcC--CCCCCeEEEECCCccHHHHHHHhhc---CceeEeeecccchhhhhhhhhh-------ccchhhh
Confidence            34556777888776  7789999999999999999999974   3699999999998888766543       4589999


Q ss_pred             EccCCCCCCCCCCccEEEecCCCCchHHHHHh
Q psy7829         195 EADAREGYLPEAPYDVIYYGGCVSEVPSRVLN  226 (511)
Q Consensus       195 ~~d~~~~~~~~~~fD~I~~~~~~~~~~~~~~~  226 (511)
                      ++|+.+...+...++.|+++.+++--..-+.+
T Consensus        81 ~~D~l~~~~~~~~~~~vv~NLPY~Ist~il~~  112 (245)
T d1yuba_          81 HQDILQFQFPNKQRYKIVGNIPYHLSTQIIKK  112 (245)
T ss_dssp             CSCCTTTTCCCSSEEEEEEECCSSSCHHHHHH
T ss_pred             hhhhhccccccceeeeEeeeeehhhhHHHHHH
Confidence            99998754444667888999887543333333

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.49  E-value=1.5e-07  Score=85.76  Aligned_cols=103  Identities=15%  Similarity=0.132  Sum_probs=70.4

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-ccccccccccccccc--cccchhhhhcc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNHIDLIANETIEII--PHILDLCYLNL  445 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~~l--~~~~d~i~~~l  445 (511)
                      +...++.+|||+|||+|..+..++....  .+|+++|+++++++.++++.. .+++++++++..+..  +..+|.+++..
T Consensus        89 l~~~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~  166 (254)
T d1xtpa_          89 LPGHGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQW  166 (254)
T ss_dssp             STTCCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEES
T ss_pred             CCCCCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeec
Confidence            6667788999999999999998887663  689999999999999988775 455777777654432  23455544322


Q ss_pred             cCCcEEEEEcCCc--cHHHHHHHHHhCCCcEEEEh
Q psy7829         446 HRGAKVLEIGSGS--GYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       446 ~~~~~vLD~~~g~--g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .-.. +    ...  -.+...+.+.|+|+|.++..
T Consensus       167 vl~h-l----~d~d~~~~l~~~~~~LkpgG~iii~  196 (254)
T d1xtpa_         167 TAIY-L----TDADFVKFFKHCQQALTPNGYIFFK  196 (254)
T ss_dssp             CGGG-S----CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccc-c----chhhhHHHHHHHHHhcCCCcEEEEE
Confidence            1000 0    000  12345677888999988764

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.48  E-value=9.4e-08  Score=90.36  Aligned_cols=113  Identities=19%  Similarity=0.168  Sum_probs=76.6

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc----cccccccccccccc------ccch
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN----HIDLIANETIEIIP------HILD  439 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~----~v~~i~~d~~~~l~------~~~d  439 (511)
                      .+++|.+|||+|||+|.+++.+|+.. + .+|+++|+++..++.+.+|+..+    +++++++|..+.+.      ..||
T Consensus       142 ~~~~g~~VLDl~~g~G~~si~~a~~g-a-~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD  219 (324)
T d2as0a2         142 WVQPGDRVLDVFTYTGGFAIHAAIAG-A-DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFD  219 (324)
T ss_dssp             GCCTTCEEEETTCTTTHHHHHHHHTT-C-SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hcCCCCeeecccCcccchhhhhhhcC-C-cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCC
Confidence            45789999999999999999998664 3 69999999998888877776643    45677777665432      2344


Q ss_pred             hhhhcccCCcEEEEEcCCc-------------cHHHHHHHHHhCCCcEEEEh--------HHHHHHHHHHHHhcC
Q psy7829         440 LCYLNLHRGAKVLEIGSGS-------------GYLATLMAHLVGPTGHVTGL--------EHMMDIAIESIANIS  493 (511)
Q Consensus       440 ~i~~~l~~~~~vLD~~~g~-------------g~~~~~l~~~l~~~g~v~~~--------~~ml~~a~~~~~~~~  493 (511)
                      .+         ++|..|-.             ..+.....+.++|||.++..        +.+.+...+...+.+
T Consensus       220 ~V---------i~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~a~~~~g  285 (324)
T d2as0a2         220 IV---------VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAG  285 (324)
T ss_dssp             EE---------EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred             ch---------hcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHHHHHHHcC
Confidence            44         44444421             11334455678999998764        445555555555544

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.48  E-value=1.8e-07  Score=85.68  Aligned_cols=108  Identities=22%  Similarity=0.185  Sum_probs=83.8

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCcc
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYD  209 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD  209 (511)
                      ..+..+||-||.|.|..+..+.+.. +..+|+.+|+++.+++.|++.+..+. +.+..++++++.+|+..... ...+||
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~~-~~~~i~~VEID~~Vi~~a~~~~~~~~-~~~~d~r~~i~~~D~~~~l~~~~~~yD  150 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIA-GKLDDPRVDVQVDDGFMHIAKSENQYD  150 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHH-TTTTSTTEEEEESCSHHHHHTCCSCEE
T ss_pred             cCCcceEEecCCCCcHHHHHHHhcC-CcceEEEecCCHHHHHHHHHhChhhc-ccccCCCeEEEechHHHHHhhcCCCCC
Confidence            3567899999999999999998864 56789999999999999999875432 11346789999999874221 246899


Q ss_pred             EEEecCCC----------CchHHHHHhhcccCcEEEEEEcc
Q psy7829         210 VIYYGGCV----------SEVPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       210 ~I~~~~~~----------~~~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      +|+++..-          ..+.+.+.+.|+|||.++.-.+.
T Consensus       151 vIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s  191 (274)
T d1iy9a_         151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (274)
T ss_dssp             EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCC
Confidence            99988543          23458899999999999986543

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.48  E-value=1.2e-07  Score=87.55  Aligned_cols=107  Identities=24%  Similarity=0.188  Sum_probs=81.7

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCccE
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYDV  210 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~  210 (511)
                      +...+||-||.|.|..+..+++.. +..+|+.+|+++.+++.|++.+..... .+..++++++.+|+..... ..+.||+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEIDp~Vi~~a~~~~~~~~~-~~~d~rv~v~~~Da~~~l~~~~~~yDv  165 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSC-GFDDPRAEIVIANGAEYVRKFKNEFDV  165 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHG-GGGCTTEEEEESCHHHHGGGCSSCEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhhcc-cccCCCcEEEhhhHHHHHhcCCCCCCE
Confidence            456799999999999999988864 567899999999999999998754321 1246789999999874322 2467999


Q ss_pred             EEecCCCC-----------chHHHHHhhcccCcEEEEEEcc
Q psy7829         211 IYYGGCVS-----------EVPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       211 I~~~~~~~-----------~~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      |+++..-+           .+.+.+++.|+|||.+++-.+.
T Consensus       166 Ii~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s  206 (295)
T d1inla_         166 IIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED  206 (295)
T ss_dssp             EEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence            99875332           2347899999999999986543

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.46  E-value=3.5e-07  Score=78.15  Aligned_cols=110  Identities=21%  Similarity=0.199  Sum_probs=86.1

Q ss_pred             hHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc
Q psy7829         117 PNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA  196 (511)
Q Consensus       117 p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  196 (511)
                      |-+...+++.|.  +.+|..++|..+|.|+.+..+.+.   +++|+|+|.++++++.+++.         ..+++.+++.
T Consensus         4 pVll~Evl~~l~--~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~---------~~~~~~~~~~   69 (182)
T d1wg8a2           4 PVLYQEALDLLA--VRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGL---------HLPGLTVVQG   69 (182)
T ss_dssp             CTTHHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHT---------CCTTEEEEES
T ss_pred             chHHHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhc---------cccceeEeeh
Confidence            346677888886  789999999999999999999875   46899999999999988764         2457999998


Q ss_pred             cCCCCC-----CCCCCccEEEecCCCCch---------------HHHHHhhcccCcEEEEEEcc
Q psy7829         197 DAREGY-----LPEAPYDVIYYGGCVSEV---------------PSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       197 d~~~~~-----~~~~~fD~I~~~~~~~~~---------------~~~~~~~LkpgG~l~~~~~~  240 (511)
                      +..+..     ...+.+|.|+.+..+...               +....+.|+|||.+++...+
T Consensus        70 ~f~~~~~~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh  133 (182)
T d1wg8a2          70 NFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH  133 (182)
T ss_dssp             CGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred             HHHHHHHHHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence            875311     123679999998776322               35678899999999986654

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.45  E-value=1.8e-07  Score=84.37  Aligned_cols=88  Identities=16%  Similarity=0.287  Sum_probs=70.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY  212 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~  212 (511)
                      ...+|||||||+|..+..+++++ |+.+++..|+ ++.++.       .+    ..++++++.+|+.+..+   .+|+++
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~-------~~----~~~rv~~~~gD~f~~~p---~aD~~~  143 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVEN-------LS----GSNNLTYVGGDMFTSIP---NADAVL  143 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTT-------CC----CBTTEEEEECCTTTCCC---CCSEEE
T ss_pred             CceEEEEecCCccHHHHHHHHhC-CCCeEEEecC-HHHHHh-------Cc----ccCceEEEecCcccCCC---CCcEEE
Confidence            45689999999999999999998 8899999998 544432       22    35689999999986432   479999


Q ss_pred             ecCCCCc--------hHHHHHhhcccC---cEEEE
Q psy7829         213 YGGCVSE--------VPSRVLNQLKKG---GRILA  236 (511)
Q Consensus       213 ~~~~~~~--------~~~~~~~~Lkpg---G~l~~  236 (511)
                      +...+|.        +++++++.|+||   |++++
T Consensus       144 l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli  178 (244)
T d1fp2a2         144 LKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTI  178 (244)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEE
T ss_pred             EEeecccCChHHHHHHHHHHHHHcCcccCCcEEEE
Confidence            9988864        457889999998   66766

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.45  E-value=1.5e-07  Score=87.19  Aligned_cols=107  Identities=17%  Similarity=0.097  Sum_probs=82.5

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCcc
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYD  209 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD  209 (511)
                      .....+||-||.|.|..+..+.+.. +..+|+.+|+++.+++.|++.+..+.. .+..++++++.+|+..... ...+||
T Consensus       104 ~~~pk~VLIiGgG~G~~~rellk~~-~v~~v~~VEID~~Vv~~a~~~~~~~~~-~~~dprv~i~i~Da~~~l~~~~~~yD  181 (312)
T d2b2ca1         104 HPDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSC-GFSHPKLDLFCGDGFEFLKNHKNEFD  181 (312)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSG-GGGCTTEEEECSCHHHHHHHCTTCEE
T ss_pred             CCCCCeEEEeCCCchHHHHHHHHcC-CcceEEEEcccHHHHHHHHhhchhhcc-ccCCCCeEEEEchHHHHHHhCCCCCC
Confidence            3456799999999999999998864 557899999999999999998765321 1346789999999874221 246799


Q ss_pred             EEEecCCC----------CchHHHHHhhcccCcEEEEEEc
Q psy7829         210 VIYYGGCV----------SEVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       210 ~I~~~~~~----------~~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      +|+++..-          ..+.+.+++.|+|||.++.-.+
T Consensus       182 vII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~  221 (312)
T d2b2ca1         182 VIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE  221 (312)
T ss_dssp             EEEECCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred             EEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence            99987543          2334789999999999998644

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.45  E-value=2.3e-07  Score=79.01  Aligned_cols=114  Identities=16%  Similarity=0.082  Sum_probs=68.3

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccc----ccccccc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH----IDLIANE  429 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~----v~~i~~d  429 (511)
                      |.+......+..+....+.+|.+|||+|||+|.+++.++...   .+|+++|.++++++.+++|+...+    +.....+
T Consensus        22 pt~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~g---a~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d   98 (171)
T d1ws6a1          22 PSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEG---WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVE   98 (171)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTT---CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHH
T ss_pred             CCcHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhcc---chhhhcccCHHHHhhhhHHHHhhccccceeeeehh
Confidence            444444444444433466789999999999999999887764   689999999988888777766333    3333333


Q ss_pred             cc----ccccccchhhhhcccCCcEEEEEcCCccHHHHHHHH--HhCCCcEEEE
Q psy7829         430 TI----EIIPHILDLCYLNLHRGAKVLEIGSGSGYLATLMAH--LVGPTGHVTG  477 (511)
Q Consensus       430 ~~----~~l~~~~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~--~l~~~g~v~~  477 (511)
                      ..    ......+|.++.+.+.+.       +.......+..  .++|+|.++.
T Consensus        99 ~~~~~~~~~~~~fD~If~DPPY~~-------~~~~~l~~l~~~~ll~~~g~ivi  145 (171)
T d1ws6a1          99 VFLPEAKAQGERFTVAFMAPPYAM-------DLAALFGELLASGLVEAGGLYVL  145 (171)
T ss_dssp             HHHHHHHHTTCCEEEEEECCCTTS-------CTTHHHHHHHHHTCEEEEEEEEE
T ss_pred             cccccccccCCccceeEEcccccc-------CHHHHHHHHHHcCCcCCCeEEEE
Confidence            21    112234666666543221       22233333332  3677776553

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.44  E-value=4.9e-07  Score=88.88  Aligned_cols=123  Identities=20%  Similarity=0.195  Sum_probs=93.3

Q ss_pred             CcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCC------------CceEEEEeCCHHHHHHHHHHH
Q psy7829         111 AGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGP------------TGKVIGVEHIPELIEASLRNI  178 (511)
Q Consensus       111 ~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~------------~~~v~~iD~~~~~~~~a~~~~  178 (511)
                      |+..+-+.+...|++.+.  ..++.+|+|-+||+|.+...+.+.+..            ...++|+|+++.+...|+.+.
T Consensus       142 G~f~TP~~Iv~~mv~ll~--~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~  219 (425)
T d2okca1         142 GQYFTPRPLIQAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNL  219 (425)
T ss_dssp             GGGCCCHHHHHHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred             hhhccchhhhHhhheecc--CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhh
Confidence            444445567778888876  667889999999999999888776521            124999999999999999988


Q ss_pred             hccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEecCCCCc-----------------------hHHHHHhhcccCcEEE
Q psy7829         179 SKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYYGGCVSE-----------------------VPSRVLNQLKKGGRIL  235 (511)
Q Consensus       179 ~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~-----------------------~~~~~~~~LkpgG~l~  235 (511)
                      .-.+.   ...+..+...|..... ....||+|++++|+..                       +...+.+.|++||+++
T Consensus       220 ~l~g~---~~~~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~  295 (425)
T d2okca1         220 YLHGI---GTDRSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAA  295 (425)
T ss_dssp             HHTTC---CSSCCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred             hhcCC---ccccceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEE
Confidence            76552   3345667788876543 3478999999999821                       3478889999999988


Q ss_pred             EEEc
Q psy7829         236 APIG  239 (511)
Q Consensus       236 ~~~~  239 (511)
                      +.+.
T Consensus       296 iI~p  299 (425)
T d2okca1         296 VVLP  299 (425)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            8654

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.43  E-value=3.5e-08  Score=88.57  Aligned_cols=100  Identities=18%  Similarity=0.204  Sum_probs=63.7

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccccccc-ccccchhhhhcccCC
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEI-IPHILDLCYLNLHRG  448 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~-l~~~~d~i~~~l~~~  448 (511)
                      ...++.+|||||||+|.++..+++..   .+|+|||+++++++.++++.. .++.++.++.... .+..+|.+...-   
T Consensus        17 ~~~~~~~VLDiGcG~G~~~~~l~~~g---~~v~giD~s~~~i~~a~~~~~-~~~~~~~~~~~~~~~~~~fD~I~~~~---   89 (225)
T d2p7ia1          17 PFFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLK-DGITYIHSRFEDAQLPRRYDNIVLTH---   89 (225)
T ss_dssp             GGCCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSC-SCEEEEESCGGGCCCSSCEEEEEEES---
T ss_pred             hhCCCCcEEEEeCCCcHHHHHHHHcC---CeEEEEeCcHHHhhhhhcccc-cccccccccccccccccccccccccc---
Confidence            33467789999999999999998664   689999999999999887765 3577776653322 223344433210   


Q ss_pred             cEEEEEcCCccHHHHHHH-HHhCCCcEEEEh
Q psy7829         449 AKVLEIGSGSGYLATLMA-HLVGPTGHVTGL  478 (511)
Q Consensus       449 ~~vLD~~~g~g~~~~~l~-~~l~~~g~v~~~  478 (511)
                        ++..--.+-.....+. +.++|+|.++..
T Consensus        90 --vleh~~d~~~~l~~i~~~~Lk~gG~l~i~  118 (225)
T d2p7ia1          90 --VLEHIDDPVALLKRINDDWLAEGGRLFLV  118 (225)
T ss_dssp             --CGGGCSSHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             --eeEecCCHHHHHHHHHHHhcCCCceEEEE
Confidence              1111112233344555 457888877653

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=3e-07  Score=88.44  Aligned_cols=70  Identities=19%  Similarity=0.299  Sum_probs=54.2

Q ss_pred             HHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---ccccccccccccccc
Q psy7829         360 IAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---TNHIDLIANETIEII  434 (511)
Q Consensus       360 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~~~v~~i~~d~~~~l  434 (511)
                      +..+++.  +...++++|||+-||+|.+++.||+.+   .+|+|+|.+++.++.+++|..   ..|++++.++..+.+
T Consensus       201 ~~~v~~~--~~~~~~~~vlDLycG~G~fsl~La~~~---~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~  273 (358)
T d1uwva2         201 VARALEW--LDVQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV  273 (358)
T ss_dssp             HHHHHHH--HTCCTTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCC
T ss_pred             HHHHHHh--hccCCCceEEEecccccccchhccccc---cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhh
Confidence            3334444  577789999999999999999999876   799999999888777666654   667788877655543

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2.5e-07  Score=85.12  Aligned_cols=108  Identities=18%  Similarity=0.115  Sum_probs=83.2

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCccE
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYDV  210 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~  210 (511)
                      +...+||-+|.|.|..+..+.+.. +..+++.+|+++.+++.|++.+..+.. .+..++++++.+|+..... ..++||+
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~-~~~~v~~vEiD~~Vv~~a~~~~~~~~~-~~~d~rv~i~~~Da~~~l~~~~~~yDv  154 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAI-GYSSSKLTLHVGDGFEFMKQNQDAFDV  154 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHG-GGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcC-CcceeeeccCCHHHHHHHHhhchhhcc-ccCCCCceEEEccHHHHHhcCCCCCCE
Confidence            456799999999999999998764 567899999999999999998754211 1246799999999874221 2368999


Q ss_pred             EEecCCC----------CchHHHHHhhcccCcEEEEEEccC
Q psy7829         211 IYYGGCV----------SEVPSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       211 I~~~~~~----------~~~~~~~~~~LkpgG~l~~~~~~~  241 (511)
                      |+++..-          ..+.+.+++.|+|||.+++-.+..
T Consensus       155 Ii~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~  195 (285)
T d2o07a1         155 IITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQ  195 (285)
T ss_dssp             EEEECC-----------CHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             EEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccch
Confidence            9988542          223478999999999999866543

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.38  E-value=4.5e-07  Score=83.63  Aligned_cols=108  Identities=19%  Similarity=0.176  Sum_probs=83.0

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC--CCCCCcc
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY--LPEAPYD  209 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD  209 (511)
                      +...+||-||.|.|..+..+.+.. +..+++.+|+++++++.|++.+..... .+..++++++.+|+....  ...++||
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEiD~~Vi~~~~~~f~~~~~-~~~~~r~~i~~~Da~~~l~~~~~~~yD  156 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAI-GYEDPRVNLVIGDGVAFLKNAAEGSYD  156 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHG-GGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcc-cceeeEEecCCHHHHHHHHHhchhhhc-cccCCCcEEEEccHHHHHhhccccCcc
Confidence            456799999999999999998864 556899999999999999997643210 024678999999987432  1236899


Q ss_pred             EEEecCCCC----------chHHHHHhhcccCcEEEEEEccC
Q psy7829         210 VIYYGGCVS----------EVPSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       210 ~I~~~~~~~----------~~~~~~~~~LkpgG~l~~~~~~~  241 (511)
                      +|+++..-+          .+.+.+++.|+|||.+++-.+..
T Consensus       157 vIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~  198 (290)
T d1xj5a_         157 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL  198 (290)
T ss_dssp             EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             EEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence            999875432          23478999999999999865543

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.8e-07  Score=88.21  Aligned_cols=100  Identities=18%  Similarity=0.175  Sum_probs=63.7

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHH---HHhhccccccccccccccccc--cccchhhhhc
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE---SIANISTNHIDLIANETIEII--PHILDLCYLN  444 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~---~~~~~~~~~v~~i~~d~~~~l--~~~~d~i~~~  444 (511)
                      .+.++++|||||||+|.+++.+|+.. + .+|+++|.++.+...   +.++-...++.+++++..+..  +..+|.++..
T Consensus        32 ~~~~~~~VLDiGcG~G~lsl~aa~~G-a-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse  109 (311)
T d2fyta1          32 HIFKDKVVLDVGCGTGILSMFAAKAG-A-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISE  109 (311)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHTT-C-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEEC
T ss_pred             ccCCcCEEEEECCCCCHHHHHHHHcC-C-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEe
Confidence            45689999999999999999999765 3 699999999765432   223333566888887755532  2345544432


Q ss_pred             ccCCcEEEEEcCCccHH---HHHHHHHhCCCcEEE
Q psy7829         445 LHRGAKVLEIGSGSGYL---ATLMAHLVGPTGHVT  476 (511)
Q Consensus       445 l~~~~~vLD~~~g~g~~---~~~l~~~l~~~g~v~  476 (511)
                      ...     ..+.+.+.+   .....+.|+|+|.++
T Consensus       110 ~~~-----~~~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         110 WMG-----YFLLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             CCB-----TTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             eee-----eecccccccHHHHHHHHhcCCCCcEEe
Confidence            211     112233433   223446789999876

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.3e-06  Score=79.56  Aligned_cols=94  Identities=18%  Similarity=0.224  Sum_probs=75.6

Q ss_pred             chhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEE
Q psy7829         115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIV  194 (511)
Q Consensus       115 ~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~  194 (511)
                      ..+.+...+++.+.  +.+++.|||||+|+|.+|..+++.. .  +|+++|+++.+++..++.+....    ...+++++
T Consensus         5 ~d~~i~~kIv~~~~--~~~~d~VlEIGPG~G~LT~~Ll~~~-~--~v~aiE~D~~l~~~L~~~~~~~~----~~~~~~~i   75 (278)
T d1zq9a1           5 KNPLIINSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA-K--KVVACELDPRLVAELHKRVQGTP----VASKLQVL   75 (278)
T ss_dssp             CCHHHHHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS-S--EEEEEESCHHHHHHHHHHHTTST----TGGGEEEE
T ss_pred             CCHHHHHHHHHHhC--CCCCCEEEEECCCchHHHHHHHhcC-C--cEEEEEEccchhHHHHHHHhhhc----cccchhhh
Confidence            34667778888775  7789999999999999999999884 3  79999999999999999886642    34689999


Q ss_pred             EccCCCCCCCCCCccEEEecCCCCc
Q psy7829         195 EADAREGYLPEAPYDVIYYGGCVSE  219 (511)
Q Consensus       195 ~~d~~~~~~~~~~fD~I~~~~~~~~  219 (511)
                      .+|+.....  ..++.|+.|.++.-
T Consensus        76 ~~D~l~~~~--~~~~~vV~NLPY~I   98 (278)
T d1zq9a1          76 VGDVLKTDL--PFFDTCVANLPYQI   98 (278)
T ss_dssp             ESCTTTSCC--CCCSEEEEECCGGG
T ss_pred             HHHHhhhhh--hhhhhhhcchHHHH
Confidence            999976432  34678889888753

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.34  E-value=2.2e-07  Score=84.82  Aligned_cols=102  Identities=18%  Similarity=0.231  Sum_probs=67.9

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----ccccccccccccccccccchhhhhc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETIEIIPHILDLCYLN  444 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~~~l~~~~d~i~~~  444 (511)
                      .+.....+|||||||+|..+..+++.. |+.+++++|+ ++++..+++++.    .++++++.+|..+.++..+|.++..
T Consensus        77 ~d~~~~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~  154 (256)
T d1qzza2          77 YDWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLS  154 (256)
T ss_dssp             SCCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEE
T ss_pred             CCCccCCEEEEECCCCCHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhcc
Confidence            677788899999999999999999998 8899999997 566666555443    3446677666555444434433221


Q ss_pred             ccCCcEEEEEcCCc---cHHHHHHHHHhCCCcEEEEh
Q psy7829         445 LHRGAKVLEIGSGS---GYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       445 l~~~~~vLD~~~g~---g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .     +| -..+.   -.+...+++.++|+|+++.+
T Consensus       155 ~-----vL-h~~~d~~~~~lL~~i~~~LkpgG~llI~  185 (256)
T d1qzza2         155 F-----VL-LNWSDEDALTILRGCVRALEPGGRLLVL  185 (256)
T ss_dssp             S-----CG-GGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             c-----cc-cccCcHHHHHHHHHHHhhcCCcceeEEE
Confidence            1     00 00111   12345677888999988876

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=3.9e-07  Score=77.87  Aligned_cols=96  Identities=18%  Similarity=0.270  Sum_probs=74.5

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC-------
Q psy7829         130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY-------  202 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-------  202 (511)
                      .++++.+|||+||++|.++..+++..++.+.++++|+.+.         +       ..+++.++++|.....       
T Consensus        19 l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---------~-------~i~~~~~~~~d~~~~~~~~~~~~   82 (180)
T d1ej0a_          19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------D-------PIVGVDFLQGDFRDELVMKALLE   82 (180)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------C-------CCTTEEEEESCTTSHHHHHHHHH
T ss_pred             ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---------c-------ccCCceEeecccccchhhhhhhh
Confidence            3578999999999999999999998888899999998652         1       2457899999986421       


Q ss_pred             -CCCCCccEEEecCCCCc-----------------hHHHHHhhcccCcEEEEEEccC
Q psy7829         203 -LPEAPYDVIYYGGCVSE-----------------VPSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       203 -~~~~~fD~I~~~~~~~~-----------------~~~~~~~~LkpgG~l~~~~~~~  241 (511)
                       ...+.+|+|+++.+...                 ...-+.+.||+||.+++=+...
T Consensus        83 ~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g  139 (180)
T d1ej0a_          83 RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG  139 (180)
T ss_dssp             HHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred             hccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecC
Confidence             12367999999987621                 1144678999999999976643

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.31  E-value=2.1e-07  Score=77.65  Aligned_cols=71  Identities=25%  Similarity=0.249  Sum_probs=51.8

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc---c-ccccccccccccccc---ccchhhhhc
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS---T-NHIDLIANETIEIIP---HILDLCYLN  444 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~---~-~~v~~i~~d~~~~l~---~~~d~i~~~  444 (511)
                      -.|.+|||+|||||.+++.++.+. + .+|+++|.++++++.+.+|+.   . ++++++++|..+.++   ..+|.++.+
T Consensus        13 ~~g~~vlDl~~GtG~~~iea~~rg-a-~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~D   90 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLAIEAVSRG-M-SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLD   90 (152)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHTT-C-CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEEC
T ss_pred             CCCCeEEEcCCccCHHHHHHHHhC-c-ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEec
Confidence            368999999999999999888765 4 699999999877776555544   3 447888888655432   334544443

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.30  E-value=1.2e-07  Score=83.84  Aligned_cols=92  Identities=13%  Similarity=0.106  Sum_probs=60.0

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccccccc--ccccchhhhhcccCC
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEI--IPHILDLCYLNLHRG  448 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~--l~~~~d~i~~~l~~~  448 (511)
                      +.++.+|||||||+|.++..+       .+++|||+++++++.++++    ++++++++..+.  .+..+|.++...   
T Consensus        34 ~~~~~~vLDiGcG~G~~~~~~-------~~~~giD~s~~~~~~a~~~----~~~~~~~d~~~l~~~~~~fD~I~~~~---   99 (208)
T d1vlma_          34 LLPEGRGVEIGVGTGRFAVPL-------KIKIGVEPSERMAEIARKR----GVFVLKGTAENLPLKDESFDFALMVT---   99 (208)
T ss_dssp             HCCSSCEEEETCTTSTTHHHH-------TCCEEEESCHHHHHHHHHT----TCEEEECBTTBCCSCTTCEEEEEEES---
T ss_pred             hCCCCeEEEECCCCccccccc-------ceEEEEeCChhhccccccc----cccccccccccccccccccccccccc---
Confidence            346778999999999887655       3578999999999988775    567777665332  223444443321   


Q ss_pred             cEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         449 AKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       449 ~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                        ++..-..+-.+...+.+.|+|+|.++..
T Consensus       100 --~l~h~~d~~~~l~~~~~~L~pgG~l~i~  127 (208)
T d1vlma_         100 --TICFVDDPERALKEAYRILKKGGYLIVG  127 (208)
T ss_dssp             --CGGGSSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --ccccccccccchhhhhhcCCCCceEEEE
Confidence              1111122344566777888888877665

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=9.8e-07  Score=81.37  Aligned_cols=86  Identities=10%  Similarity=0.132  Sum_probs=60.4

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHH---HHHhhccccccccccccccccccccchhhhhcc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAI---ESIANISTNHIDLIANETIEIIPHILDLCYLNL  445 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~---~~~~~~~~~~v~~i~~d~~~~l~~~~d~i~~~l  445 (511)
                      +...+|++|||+++|+|.-|..+|... .++.|+++|++...++   .+.++++.+++.+...+......      ...-
T Consensus        98 L~~~~g~~vLD~CAaPGgKt~~la~l~-~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~------~~~~  170 (284)
T d1sqga2          98 LAPQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQW------CGEQ  170 (284)
T ss_dssp             HCCCTTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHH------HTTC
T ss_pred             cCccccceeEeccCccccchhhhhhhh-hhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchh------cccc
Confidence            688999999999999999999999876 5699999999855544   45566666665554443221100      0011


Q ss_pred             cCCcEEEEEcC-CccHH
Q psy7829         446 HRGAKVLEIGS-GSGYL  461 (511)
Q Consensus       446 ~~~~~vLD~~~-g~g~~  461 (511)
                      ..+..++|..| |+|.+
T Consensus       171 ~fd~IL~DaPCSg~G~~  187 (284)
T d1sqga2         171 QFDRILLDAPCSATGVI  187 (284)
T ss_dssp             CEEEEEEECCCCCGGGT
T ss_pred             cccEEEEeccccccCcc
Confidence            23457889988 89987

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.28  E-value=1.5e-06  Score=78.35  Aligned_cols=89  Identities=18%  Similarity=0.214  Sum_probs=68.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIY  212 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~  212 (511)
                      ...+|||||||+|..++.+++++ |+.+++.+|+.+ .++       ...    ..+++++..+|+.+..+.   .|.++
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-vi~-------~~~----~~~r~~~~~~d~~~~~P~---ad~~~  144 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKY-PTIKGINFDLPH-VIE-------DAP----SYPGVEHVGGDMFVSIPK---ADAVF  144 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEECTT-TTT-------TCC----CCTTEEEEECCTTTCCCC---CSCEE
T ss_pred             CCcEEEEecCCCcHHHHHHHHHC-CCCeEEEcccHH-hhh-------hcc----cCCceEEecccccccCCC---cceEE
Confidence            35689999999999999999998 899999999954 332       111    356899999999875442   46666


Q ss_pred             ecCCCC--------chHHHHHhhcccCcEEEEE
Q psy7829         213 YGGCVS--------EVPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       213 ~~~~~~--------~~~~~~~~~LkpgG~l~~~  237 (511)
                      ....++        .+++++++.|+|||++++.
T Consensus       145 l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~  177 (243)
T d1kyza2         145 MKWICHDWSDEHCLKFLKNCYEALPDNGKVIVA  177 (243)
T ss_dssp             CSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEE
T ss_pred             EEEEeecCCHHHHHHHHHHHHHhcCCCceEEEE
Confidence            666654        3458999999999999884

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.26  E-value=1.1e-06  Score=82.23  Aligned_cols=87  Identities=18%  Similarity=0.287  Sum_probs=64.6

Q ss_pred             hcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHH---Hhhccccccccccccccccccccchhhhhc
Q psy7829         368 YLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIES---IANISTNHIDLIANETIEIIPHILDLCYLN  444 (511)
Q Consensus       368 ~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~---~~~~~~~~v~~i~~d~~~~l~~~~d~i~~~  444 (511)
                      .+..++|++|||+++|+|.-|..++.....++.++++|++...++..   .++++..|+.+...|....-.       ..
T Consensus       111 ~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~-------~~  183 (313)
T d1ixka_         111 ALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE-------LN  183 (313)
T ss_dssp             HHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG-------GC
T ss_pred             cccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccccccc-------cc
Confidence            36789999999999999999999999987789999999997766654   455667777776666443211       01


Q ss_pred             ccCCcEEEEEcC-CccHH
Q psy7829         445 LHRGAKVLEIGS-GSGYL  461 (511)
Q Consensus       445 l~~~~~vLD~~~-g~g~~  461 (511)
                      ...+..++|..| |+|.+
T Consensus       184 ~~fD~ILvDaPCSg~G~~  201 (313)
T d1ixka_         184 VEFDKILLDAPCTGSGTI  201 (313)
T ss_dssp             CCEEEEEEECCTTSTTTC
T ss_pred             ccccEEEEccccccCCce
Confidence            122456788888 78866

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.23  E-value=4.9e-07  Score=85.19  Aligned_cols=98  Identities=17%  Similarity=0.185  Sum_probs=59.7

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHh---hcc-ccccccccccccccc--cccchhhhhc
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA---NIS-TNHIDLIANETIEII--PHILDLCYLN  444 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~---~~~-~~~v~~i~~d~~~~l--~~~~d~i~~~  444 (511)
                      +.+|++|||||||+|.+++.+|+.. + .+|+++|.++.+ ..+.+   ..+ .+++.+++++..+..  ...+|.+...
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~G-a-~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~  107 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKAG-A-RKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISE  107 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTT-C-SEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEEC
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHhC-C-CEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHHHcccccceeEEEeee
Confidence            4579999999999999999998764 3 689999998543 22222   222 455888877755432  1234433322


Q ss_pred             ccCCcEEEEEcCCccH---HHHHHHHHhCCCcEEE
Q psy7829         445 LHRGAKVLEIGSGSGY---LATLMAHLVGPTGHVT  476 (511)
Q Consensus       445 l~~~~~vLD~~~g~g~---~~~~l~~~l~~~g~v~  476 (511)
                      ...     +...+.+.   +.....+.|+|+|.++
T Consensus       108 ~~~-----~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         108 WMG-----YCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             CCB-----BTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eee-----eeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            110     11122222   2345567889999875

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=6.6e-07  Score=80.63  Aligned_cols=73  Identities=18%  Similarity=0.278  Sum_probs=61.2

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-cccccccccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNHIDLIANETIEI  433 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~~  433 (511)
                      .+..+.+++..  +.+.+++.|||||||+|.+|..|++..   .+|++||+|..++....++.. .+|++++++|....
T Consensus         6 d~~~~~~Iv~~--~~~~~~d~vlEIGpG~G~LT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~   79 (252)
T d1qyra_           6 DQFVIDSIVSA--INPQKGQAMVEIGPGLAALTEPVGERL---DQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTF   79 (252)
T ss_dssp             CHHHHHHHHHH--HCCCTTCCEEEECCTTTTTHHHHHTTC---SCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGC
T ss_pred             CHHHHHHHHHh--cCCCCCCEEEEECCCchHHHHHHHccC---CceEEEEeccchhHHHHHHhhhccchhHHhhhhhhh
Confidence            34667778777  778899999999999999999999765   789999999999888766543 57899999998764

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.21  E-value=7.8e-08  Score=86.55  Aligned_cols=71  Identities=27%  Similarity=0.431  Sum_probs=60.6

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-cccccccccccccc
Q psy7829         358 RSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-TNHIDLIANETIEI  433 (511)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-~~~v~~i~~d~~~~  433 (511)
                      ..+.+++..  +.+.++++|||||||+|.+|..|++..   .+|++||+|..+++...+++. .+|++++++|..+.
T Consensus        16 ~ii~kIv~~--~~~~~~d~VLEIGpG~G~LT~~L~~~~---~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~   87 (245)
T d1yuba_          16 KVLNQIIKQ--LNLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQF   87 (245)
T ss_dssp             TTHHHHHHH--CCCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTT
T ss_pred             HHHHHHHHh--cCCCCCCeEEEECCCccHHHHHHHhhc---CceeEeeecccchhhhhhhhhhccchhhhhhhhhcc
Confidence            446777877  788999999999999999999999875   799999999998888777764 67899999987653

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.3e-06  Score=79.58  Aligned_cols=72  Identities=18%  Similarity=0.292  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----ccccccccccccc
Q psy7829         357 ERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANETIE  432 (511)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d~~~  432 (511)
                      +..+.+++..  +.+.+++.|||||+|+|.+|..|++..   .+|++||+|+.++....+.+.    ..+++++.+|..+
T Consensus         7 ~~i~~kIv~~--~~~~~~d~VlEIGPG~G~LT~~Ll~~~---~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~   81 (278)
T d1zq9a1           7 PLIINSIIDK--AALRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLK   81 (278)
T ss_dssp             HHHHHHHHHH--TCCCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTT
T ss_pred             HHHHHHHHHH--hCCCCCCEEEEECCCchHHHHHHHhcC---CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhh
Confidence            4667777776  788899999999999999999999876   799999999998887766554    3578888888766


Q ss_pred             c
Q psy7829         433 I  433 (511)
Q Consensus       433 ~  433 (511)
                      .
T Consensus        82 ~   82 (278)
T d1zq9a1          82 T   82 (278)
T ss_dssp             S
T ss_pred             h
Confidence            4

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.2e-06  Score=81.23  Aligned_cols=89  Identities=16%  Similarity=0.206  Sum_probs=61.7

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHH---HHhhccccccccccccccccccccchhhhhcc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE---SIANISTNHIDLIANETIEIIPHILDLCYLNL  445 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~---~~~~~~~~~v~~i~~d~~~~l~~~~d~i~~~l  445 (511)
                      +...+|++|||+++|+|.-|+.+|..++++++|+++|++...++.   +.++++..|+.+...|....-+...    ..-
T Consensus        90 L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~----~~~  165 (293)
T d2b9ea1          90 LDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDP----RYH  165 (293)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCG----GGT
T ss_pred             cCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhccccc----ccc
Confidence            577899999999999999999999988788999999999665554   5556677888877776544322110    001


Q ss_pred             cCCcEEEEEcC-CccHH
Q psy7829         446 HRGAKVLEIGS-GSGYL  461 (511)
Q Consensus       446 ~~~~~vLD~~~-g~g~~  461 (511)
                      +.+..++|..| |+|.+
T Consensus       166 ~fD~VL~DaPCSg~G~~  182 (293)
T d2b9ea1         166 EVHYILLDPSCSGSGMP  182 (293)
T ss_dssp             TEEEEEECCCCCC----
T ss_pred             eeeEEeecCcccchhhh
Confidence            22346778887 77765

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.19  E-value=4.2e-07  Score=86.16  Aligned_cols=99  Identities=17%  Similarity=0.192  Sum_probs=60.0

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhh---cc-ccccccccccccccc--cccchhhhh
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIAN---IS-TNHIDLIANETIEII--PHILDLCYL  443 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~---~~-~~~v~~i~~d~~~~l--~~~~d~i~~  443 (511)
                      .+.++.+|||||||+|.+++.+|+...  .+|+++|.++ ++..++++   .+ ..++.+++++..+..  +..+|.+..
T Consensus        35 ~~~~~~~VLDlGcGtG~ls~~aa~~Ga--~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~s  111 (328)
T d1g6q1_          35 DLFKDKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIIS  111 (328)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTCC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEE
T ss_pred             ccCCcCEEEEeCCCCCHHHHHHHHhCC--CEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEE
Confidence            345799999999999999998887653  6999999985 33333332   22 455777777654431  233444433


Q ss_pred             cccCCcEEEEEcCCccHH---HHHHHHHhCCCcEEE
Q psy7829         444 NLHRGAKVLEIGSGSGYL---ATLMAHLVGPTGHVT  476 (511)
Q Consensus       444 ~l~~~~~vLD~~~g~g~~---~~~l~~~l~~~g~v~  476 (511)
                      .+..     ....+.+.+   .....+.|+|+|.++
T Consensus       112 e~~~-----~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         112 EWMG-----YFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             CCCB-----TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             Eecc-----eeeccchhHHHHHHHHHhccCCCeEEE
Confidence            2211     011233333   333456789999874

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.19  E-value=5.1e-07  Score=84.58  Aligned_cols=122  Identities=12%  Similarity=0.056  Sum_probs=76.9

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-----cccccccccccccccc------ccc
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-----TNHIDLIANETIEIIP------HIL  438 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-----~~~v~~i~~d~~~~l~------~~~  438 (511)
                      .+.+|.+|||++||+|.+++.+++.. . .+|+++|+++..++.+++|+.     ..+++++++|..+.+.      ..|
T Consensus       141 ~~~~g~~VLdlf~~~G~~sl~aa~~g-a-~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~f  218 (317)
T d2b78a2         141 GSAAGKTVLNLFSYTAAFSVAAAMGG-A-MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTY  218 (317)
T ss_dssp             TTTBTCEEEEETCTTTHHHHHHHHTT-B-SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred             HhhCCCceeecCCCCcHHHHHHHhCC-C-ceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCC
Confidence            45689999999999999999877543 2 689999999877777766654     2456788888776654      235


Q ss_pred             hhhhhcccCCcEEE-EEcC---CccHHHHHHHHHhCCCcEEEEh--------HHHHHHHHHHHHhcC
Q psy7829         439 DLCYLNLHRGAKVL-EIGS---GSGYLATLMAHLVGPTGHVTGL--------EHMMDIAIESIANIS  493 (511)
Q Consensus       439 d~i~~~l~~~~~vL-D~~~---g~g~~~~~l~~~l~~~g~v~~~--------~~ml~~a~~~~~~~~  493 (511)
                      |.++.+.+.-.+-- ++-.   +-..+.....+.++|+|.++..        +.+.+..++.+...+
T Consensus       219 D~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~~~~  285 (317)
T d2b78a2         219 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQK  285 (317)
T ss_dssp             EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCC
T ss_pred             CEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHHHcC
Confidence            65555433211000 0000   0112344456778999988765        445555555555444

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.16  E-value=3.3e-06  Score=74.88  Aligned_cols=103  Identities=17%  Similarity=0.143  Sum_probs=82.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC---CCCCCcc
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY---LPEAPYD  209 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD  209 (511)
                      .+.+++|+|+|.|.-++.+|-.. |+.+++.+|.+..-+...+.-....     +..|+.+++..++...   ...+.||
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~-p~~~v~Lves~~KK~~FL~~v~~~L-----~L~n~~i~~~R~E~~~~~~~~~~~~D  143 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEAL-----QLENTTFCHDRAETFGQRKDVRESYD  143 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHH-----TCSSEEEEESCHHHHTTCTTTTTCEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhC-CCccceeecchHHHHHHHHHHHHHh-----CCCCcEEEeehhhhccccccccccce
Confidence            56799999999999999999876 8899999999999999888877774     5678999988775321   1236899


Q ss_pred             EEEecCCC--CchHHHHHhhcccCcEEEEEEccC
Q psy7829         210 VIYYGGCV--SEVPSRVLNQLKKGGRILAPIGPM  241 (511)
Q Consensus       210 ~I~~~~~~--~~~~~~~~~~LkpgG~l~~~~~~~  241 (511)
                      +|++-+..  ..+..-+...+++||.+++.=+..
T Consensus       144 ~v~sRAva~l~~ll~~~~~~l~~~g~~i~~KG~~  177 (239)
T d1xdza_         144 IVTARAVARLSVLSELCLPLVKKNGLFVALKAAS  177 (239)
T ss_dssp             EEEEECCSCHHHHHHHHGGGEEEEEEEEEEECC-
T ss_pred             EEEEhhhhCHHHHHHHHhhhcccCCEEEEECCCC
Confidence            99987654  345677889999999999866543

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.14  E-value=3.7e-06  Score=77.59  Aligned_cols=74  Identities=18%  Similarity=0.127  Sum_probs=56.8

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc-----ccccccccccccccc------ccc
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST-----NHIDLIANETIEIIP------HIL  438 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~-----~~v~~i~~d~~~~l~------~~~  438 (511)
                      ...++.+|||++||+|.+++.+|+..   .+|++||.+...++.+++|+..     .+++++++|..+.+.      ..|
T Consensus       129 ~~~~~~rVLdlf~~tG~~sl~aa~~G---A~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~f  205 (309)
T d2igta1         129 TADRPLKVLNLFGYTGVASLVAAAAG---AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTY  205 (309)
T ss_dssp             HSSSCCEEEEETCTTCHHHHHHHHTT---CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCB
T ss_pred             hccCCCeEEEecCCCcHHHHHHHhCC---CeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCC
Confidence            45678999999999999999988643   6899999998888888777653     247788999877654      346


Q ss_pred             hhhhhccc
Q psy7829         439 DLCYLNLH  446 (511)
Q Consensus       439 d~i~~~l~  446 (511)
                      |.++.+.+
T Consensus       206 D~IilDPP  213 (309)
T d2igta1         206 DIILTDPP  213 (309)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            66665543

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.12  E-value=1.7e-06  Score=74.20  Aligned_cols=90  Identities=18%  Similarity=0.205  Sum_probs=63.0

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc----cccccccccc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS----TNHIDLIANE  429 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~----~~~v~~i~~d  429 (511)
                      |++.+.-..+... ......|.+|||++||||.+++.++....  .+|+.||.+.+.++.+.+|+.    ..+++++++|
T Consensus        23 Pt~~~vrealFn~-l~~~~~~~~vLDlfaGsG~~g~ea~srGa--~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D   99 (182)
T d2fhpa1          23 PTTDKVKESIFNM-IGPYFDGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMD   99 (182)
T ss_dssp             CCCHHHHHHHHHH-HCSCCSSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESC
T ss_pred             cCcHHHHHHHHHH-HHHhcCCCEEEEcccccccccceeeecch--hHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Confidence            3444444444443 23345799999999999999999988763  689999999877777666654    3367888888


Q ss_pred             ccccccc------cchhhhhccc
Q psy7829         430 TIEIIPH------ILDLCYLNLH  446 (511)
Q Consensus       430 ~~~~l~~------~~d~i~~~l~  446 (511)
                      ..+.+..      .+|.++.+++
T Consensus       100 ~~~~l~~~~~~~~~fDlIflDPP  122 (182)
T d2fhpa1         100 ANRALEQFYEEKLQFDLVLLDPP  122 (182)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCC
T ss_pred             chhhhhhhcccCCCcceEEechh
Confidence            7665532      4666666554

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.11  E-value=2.2e-06  Score=77.80  Aligned_cols=124  Identities=16%  Similarity=0.125  Sum_probs=77.7

Q ss_pred             CCCCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccc----cccc
Q psy7829         351 DNGPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH----IDLI  426 (511)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~----v~~i  426 (511)
                      .+-|.|...+..++..  ..-....+|+|+|||+|..++.+++ . |+.+|+++|++++.+..+++|....+    +.+.
T Consensus        90 IPRpeTE~lv~~~~~~--~~~~~~~~vld~g~GsG~i~~~la~-~-~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~  165 (271)
T d1nv8a_          90 VPRPETEELVELALEL--IRKYGIKTVADIGTGSGAIGVSVAK-F-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVR  165 (271)
T ss_dssp             CCCTTHHHHHHHHHHH--HHHHTCCEEEEESCTTSHHHHHHHH-H-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred             Cchhhhhhhhhhhhhh--hccccccEEEEeeeeeehhhhhhhh-c-ccceeeechhhhhHHHHHHHHHHHcCCCceeEEe
Confidence            3336777777777765  3334456899999999999999885 4 67999999999887777776655322    3445


Q ss_pred             ccccccccc---ccchhhhhcccC--------------CcEEEEEcC-CccHHHHHHHHHhCCCcEEEEh
Q psy7829         427 ANETIEIIP---HILDLCYLNLHR--------------GAKVLEIGS-GSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       427 ~~d~~~~l~---~~~d~i~~~l~~--------------~~~vLD~~~-g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .++..+..+   ..+|.++.|.+.              ....|+-|. |.-.+-..+.+.++|+|.++.-
T Consensus       166 ~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~E  235 (271)
T d1nv8a_         166 KGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME  235 (271)
T ss_dssp             ESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred             ecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEE
Confidence            555444433   345666666431              011222121 3333333455668998877653

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=2.2e-06  Score=77.14  Aligned_cols=93  Identities=12%  Similarity=0.035  Sum_probs=70.5

Q ss_pred             chhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEE
Q psy7829         115 NAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIV  194 (511)
Q Consensus       115 ~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~  194 (511)
                      ..+.+...+++.+.  +.+++.|||||||+|.+|..|++..   .+|+++|+++.+++..+++...       .+|++++
T Consensus         5 ~d~~~~~~Iv~~~~--~~~~d~vlEIGpG~G~LT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~-------~~~~~ii   72 (252)
T d1qyra_           5 NDQFVIDSIVSAIN--PQKGQAMVEIGPGLAALTEPVGERL---DQLTVIELDRDLAARLQTHPFL-------GPKLTIY   72 (252)
T ss_dssp             CCHHHHHHHHHHHC--CCTTCCEEEECCTTTTTHHHHHTTC---SCEEEECCCHHHHHHHHTCTTT-------GGGEEEE
T ss_pred             CCHHHHHHHHHhcC--CCCCCEEEEECCCchHHHHHHHccC---CceEEEEeccchhHHHHHHhhh-------ccchhHH
Confidence            34567778888886  7789999999999999999999874   3699999999999998875432       3589999


Q ss_pred             EccCCCCCCC-----CCCccEEEecCCCCc
Q psy7829         195 EADAREGYLP-----EAPYDVIYYGGCVSE  219 (511)
Q Consensus       195 ~~d~~~~~~~-----~~~fD~I~~~~~~~~  219 (511)
                      .+|+......     .+.--.|+.+.++.-
T Consensus        73 ~~D~l~~~~~~~~~~~~~~~~vvgNlPY~I  102 (252)
T d1qyra_          73 QQDAMTFNFGELAEKMGQPLRVFGNLPYNI  102 (252)
T ss_dssp             CSCGGGCCHHHHHHHHTSCEEEEEECCTTT
T ss_pred             hhhhhhhcccccccccCCCeEEEecchHHH
Confidence            9999753211     012236778877753

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.09  E-value=4.8e-06  Score=73.81  Aligned_cols=110  Identities=18%  Similarity=0.210  Sum_probs=72.8

Q ss_pred             hhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeE
Q psy7829         116 APNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMV---GPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVR  192 (511)
Q Consensus       116 ~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~  192 (511)
                      .|.-...+.+++. .. ++.+|||||++.|+.+..++..+   +++++++++|+++........          ..++++
T Consensus        65 ~p~d~~~~~eli~-~~-KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~----------~~~~I~  132 (232)
T d2bm8a1          65 DPDTQAVYHDMLW-EL-RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----------DMENIT  132 (232)
T ss_dssp             CHHHHHHHHHHHH-HH-CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----------GCTTEE
T ss_pred             CHHHHHHHHHHHH-Hh-CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc----------ccccee
Confidence            4555555555554 12 46789999999999888777543   568999999998754322111          246899


Q ss_pred             EEEccCCCCC----CCCCCccEEEecCCCC--chH--HHHHhhcccCcEEEEE
Q psy7829         193 IVEADAREGY----LPEAPYDVIYYGGCVS--EVP--SRVLNQLKKGGRILAP  237 (511)
Q Consensus       193 ~~~~d~~~~~----~~~~~fD~I~~~~~~~--~~~--~~~~~~LkpgG~l~~~  237 (511)
                      ++.+|..+..    .....+|.|+.+..=.  +..  -.+...|+|||.+++.
T Consensus       133 ~i~gDs~~~~~~~~l~~~~~dlIfID~~H~~~~v~~~~~~~~lLk~GG~iIve  185 (232)
T d2bm8a1         133 LHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIE  185 (232)
T ss_dssp             EEECCSSCSGGGGGGSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEEC
T ss_pred             eeecccccHHHHHHHHhcCCCEEEEcCCcchHHHHHHHHHhcccCcCCEEEEE
Confidence            9999976321    1234689999876521  111  1355799999999883

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=6.4e-06  Score=82.85  Aligned_cols=127  Identities=14%  Similarity=0.035  Sum_probs=86.2

Q ss_pred             CcccchhHHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCC-----------------CceEEEEeCCHHHHHH
Q psy7829         111 AGVMNAPNQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGP-----------------TGKVIGVEHIPELIEA  173 (511)
Q Consensus       111 ~~~~~~p~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~-----------------~~~v~~iD~~~~~~~~  173 (511)
                      |...+-..+...|++.+.  ..++.+|+|-+||+|.+...+.+.+..                 ...++|+|+++.+...
T Consensus       144 GqfyTP~~Iv~~mv~ll~--~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~l  221 (524)
T d2ar0a1         144 GQYFTPRPLIKTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL  221 (524)
T ss_dssp             -CCCCCHHHHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHH
T ss_pred             chhccccchhHhhhhccc--CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHH
Confidence            444444567777888876  667889999999999998877665421                 1258999999999999


Q ss_pred             HHHHHhccCCCcCCCCCeEEEEccCCCC-CCCCCCccEEEecCCCC--------------------chHHHHHhhcccCc
Q psy7829         174 SLRNISKGNKDLLDSGRVRIVEADAREG-YLPEAPYDVIYYGGCVS--------------------EVPSRVLNQLKKGG  232 (511)
Q Consensus       174 a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~I~~~~~~~--------------------~~~~~~~~~LkpgG  232 (511)
                      |+-++--.+...-....-.+...+.... ......||+|++++|+.                    .+...+.+.|+|||
T Consensus       222 a~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gG  301 (524)
T d2ar0a1         222 ALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGG  301 (524)
T ss_dssp             HHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEE
T ss_pred             HHHHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccC
Confidence            9988765441100001112344443321 11236799999999982                    13478899999999


Q ss_pred             EEEEEEc
Q psy7829         233 RILAPIG  239 (511)
Q Consensus       233 ~l~~~~~  239 (511)
                      ++.+.+.
T Consensus       302 r~aiIlP  308 (524)
T d2ar0a1         302 RAAVVVP  308 (524)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEe
Confidence            9888654

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=3.3e-06  Score=76.22  Aligned_cols=49  Identities=14%  Similarity=0.079  Sum_probs=42.8

Q ss_pred             CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccc
Q psy7829         373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNH  422 (511)
Q Consensus       373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~  422 (511)
                      +..++||||||+|..++.+|+.. |+.+++|+|++++.++.|++|+..++
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~-~~~~~~~~Di~~~al~~A~~N~~~n~  109 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNN  109 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             ccceEEEeCCCchHHHHHHHHhC-CCccccceecCHHHHHHHHHHHHHhC
Confidence            34689999999999999999988 67999999999998888888876544

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.00  E-value=2.1e-06  Score=73.64  Aligned_cols=90  Identities=13%  Similarity=0.216  Sum_probs=60.1

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHH---hhccccccccccccc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESI---ANISTNHIDLIANET  430 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~---~~~~~~~v~~i~~d~  430 (511)
                      |++.+.-..+..... ..-.+.+|||++||||.+++.++.+..  .+|+.||.+.+.++...   ++....+++++++|.
T Consensus        25 Pt~~~vre~lfn~l~-~~~~~~~vLDlfaGsG~~giealsrGa--~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~  101 (183)
T d2fpoa1          25 PTTDRVRETLFNWLA-PVIVDAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNA  101 (183)
T ss_dssp             --CHHHHHHHHHHHH-HHHTTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCH
T ss_pred             cCcHHHHHHHHhhhh-cccchhhhhhhhccccceeeeEEecCc--ceeEEEEEeechhhHHHHHHhhccccceeeeeecc
Confidence            444444444433311 123678999999999999999887763  69999999976666544   445567788888887


Q ss_pred             ccccc---ccchhhhhccc
Q psy7829         431 IEIIP---HILDLCYLNLH  446 (511)
Q Consensus       431 ~~~l~---~~~d~i~~~l~  446 (511)
                      .+.+.   ..+|.++.+++
T Consensus       102 ~~~l~~~~~~fDlIf~DPP  120 (183)
T d2fpoa1         102 MSFLAQKGTPHNIVFVDPP  120 (183)
T ss_dssp             HHHHSSCCCCEEEEEECCS
T ss_pred             cccccccccccCEEEEcCc
Confidence            66543   34666666544

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=2.1e-06  Score=79.29  Aligned_cols=48  Identities=19%  Similarity=0.204  Sum_probs=37.8

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHh-----CCCcEEEEEcCCHHHHHHHHhhcc
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLV-----GPTGHVTGLEHMMDIAIESIANIS  419 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~-----~~~~~v~~id~~~~~~~~~~~~~~  419 (511)
                      ++..+|||||||+|.++..+++.+     +...++++||++..+++.+.+++.
T Consensus        39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~   91 (280)
T d1jqea_          39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVA   91 (280)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHh
Confidence            445589999999999998887653     123478999999999998877654

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.88  E-value=1.4e-05  Score=76.09  Aligned_cols=105  Identities=20%  Similarity=0.114  Sum_probs=79.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCc----------CCCCCeEEEEccCCCCC
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDL----------LDSGRVRIVEADAREGY  202 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~----------~~~~~v~~~~~d~~~~~  202 (511)
                      .+.+|||..||||..++..+... +..+|++.|+|+.+++.+++|++.++...          ....++.+.+.|+....
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~-~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~  123 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALET-PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM  123 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhC-CCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence            57899999999999999988876 45689999999999999999998875311          01224667777764322


Q ss_pred             C-CCCCccEEEecCCCC--chHHHHHhhcccCcEEEEEE
Q psy7829         203 L-PEAPYDVIYYGGCVS--EVPSRVLNQLKKGGRILAPI  238 (511)
Q Consensus       203 ~-~~~~fD~I~~~~~~~--~~~~~~~~~LkpgG~l~~~~  238 (511)
                      . ....||+|.+++--.  .+++.+.+.++.||.|.+..
T Consensus       124 ~~~~~~fDvIDiDPfGs~~pfldsAi~a~~~~Gll~vTa  162 (375)
T d2dula1         124 AERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTA  162 (375)
T ss_dssp             HHSTTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HhhcCcCCcccCCCCCCcHHHHHHHHHHhccCCEEEEEe
Confidence            1 235799999985322  34588999999999999863

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.66  E-value=4.5e-05  Score=64.64  Aligned_cols=110  Identities=16%  Similarity=0.173  Sum_probs=75.0

Q ss_pred             HHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccccccchh
Q psy7829         361 AHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIPHILDL  440 (511)
Q Consensus       361 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l~~~~d~  440 (511)
                      ..++..  +.+.+|..++|..+|.|..+..+.+.   +++|+|+|+++++++.+.+. ..+++.++++.-.+ +...+..
T Consensus         8 ~Evl~~--l~~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~-~~~~~~~~~~~f~~-~~~~l~~   80 (182)
T d1wg8a2           8 QEALDL--LAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGL-HLPGLTVVQGNFRH-LKRHLAA   80 (182)
T ss_dssp             HHHHHH--HTCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHT-CCTTEEEEESCGGG-HHHHHHH
T ss_pred             HHHHHh--cCCCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhc-cccceeEeehHHHH-HHHHHHH
Confidence            344665  67899999999999999999888764   48999999999998877654 45567777654322 2221111


Q ss_pred             hhhcccCCcEEEEEcCCccHH-------------HHHHHHHhCCCcEEEEh
Q psy7829         441 CYLNLHRGAKVLEIGSGSGYL-------------ATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       441 i~~~l~~~~~vLD~~~g~g~~-------------~~~l~~~l~~~g~v~~~  478 (511)
                      . ..-.-++.++|+|..+..+             .......++++|.+..+
T Consensus        81 ~-~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii  130 (182)
T d1wg8a2          81 L-GVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVI  130 (182)
T ss_dssp             T-TCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             c-CCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEE
Confidence            1 1113467889999866542             23334667888888766

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=7.9e-06  Score=74.14  Aligned_cols=50  Identities=18%  Similarity=0.076  Sum_probs=40.4

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN  421 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~  421 (511)
                      ...+|.+|||||||+|..+..++....  .+|+|+|+++.+++.+++++...
T Consensus        48 ~~~~g~~vLDlGcG~G~~~~~~~~~~~--~~v~giD~S~~~i~~a~~~~~~~   97 (257)
T d2a14a1          48 GGLQGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKE   97 (257)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTC
T ss_pred             cCCCCCEEEEECCCCCHhHHHHhcccc--CcEEEecCCHHHHHHHHHHHhhc
Confidence            445788999999999999887775542  47999999999999888776543

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.53  E-value=0.00019  Score=64.58  Aligned_cols=60  Identities=18%  Similarity=0.215  Sum_probs=48.9

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS  419 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~  419 (511)
                      +-+...+.+++..   -..+|+.|||--||||..+.++. ..+  -+.+|+|++++.++.|.+++.
T Consensus       196 ~kP~~L~~~lI~~---~s~~gd~VlDpF~GSGTT~~aa~-~~~--R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         196 PKPRDLIERIIRA---SSNPNDLVLDCFMGSGTTAIVAK-KLG--RNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CCCHHHHHHHHHH---HCCTTCEEEESSCTTCHHHHHHH-HTT--CEEEEEESCHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHH---hCCCCCEEEECCCCchHHHHHHH-HcC--CeEEEEeCCHHHHHHHHHHHc
Confidence            4556778777775   35789999999999999887765 444  899999999999999888763

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.45  E-value=0.00034  Score=58.57  Aligned_cols=95  Identities=20%  Similarity=0.212  Sum_probs=68.3

Q ss_pred             cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC------
Q psy7829         130 HLVDGAKVLDLGSGS-GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY------  202 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~------  202 (511)
                      .++++++||-+|||. |..+..+++..+  ++|+++|.+++.++.|++.-.          ...+..-+.....      
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G--a~vi~v~~~~~r~~~a~~~ga----------~~~~~~~~~~~~~~~~~~~   90 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKNCGA----------DVTLVVDPAKEEESSIIER   90 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTTC----------SEEEECCTTTSCHHHHHHH
T ss_pred             CCCCCCEEEEEcccccchhhHhhHhhhc--ccccccchHHHHHHHHHHcCC----------cEEEeccccccccchhhhh
Confidence            378999999999995 777888888864  589999999999998877421          1222211111100      


Q ss_pred             ---CCCCCccEEEecCCCCchHHHHHhhcccCcEEEE
Q psy7829         203 ---LPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILA  236 (511)
Q Consensus       203 ---~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~l~~  236 (511)
                         .....+|+|+-...-......+.+.++|+|++++
T Consensus        91 ~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~  127 (170)
T d1e3ja2          91 IRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLML  127 (170)
T ss_dssp             HHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEE
T ss_pred             hhcccccCCceeeecCCChHHHHHHHHHHhcCCceEE
Confidence               0124689998877666677889999999999987

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=0.00012  Score=63.24  Aligned_cols=100  Identities=16%  Similarity=0.245  Sum_probs=66.9

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCH---HHHHHHHhhcccccccccccccccccc-ccchhhhhc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMM---DIAIESIANISTNHIDLIANETIEIIP-HILDLCYLN  444 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~---~~~~~~~~~~~~~~v~~i~~d~~~~l~-~~~d~i~~~  444 (511)
                      +..-++.+|+|+|||.|.-++.+|-.. |+.+++.+|.+.   ...+.....++..|++++++...+... ..+|.+.+.
T Consensus        61 ~~~~~~~~ilDiGsGaG~PGi~laI~~-p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sR  139 (207)
T d1jsxa_          61 APYLQGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISR  139 (207)
T ss_dssp             GGGCCSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECS
T ss_pred             hhhhcCCceeeeeccCCceeeehhhhc-ccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhh
Confidence            344467899999999999999999655 889999999984   445566778888899988775544322 123322211


Q ss_pred             ccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         445 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       445 l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .         -+....+.....+.++++|.++..
T Consensus       140 A---------~~~~~~ll~~~~~~l~~~g~~~~~  164 (207)
T d1jsxa_         140 A---------FASLNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             C---------SSSHHHHHHHHTTSEEEEEEEEEE
T ss_pred             h---------hcCHHHHHHHHHHhcCCCcEEEEE
Confidence            0         012333344445567888888877

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.40  E-value=0.00017  Score=67.12  Aligned_cols=63  Identities=11%  Similarity=0.027  Sum_probs=52.3

Q ss_pred             CCCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccc
Q psy7829         353 GPSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTN  421 (511)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~  421 (511)
                      .+-+...+.+++..   ...+|+.|||.-||||..+.++. ..|  -+.+|+|++++.++.+.+++...
T Consensus       233 t~kP~~L~~rlI~~---~s~~gdiVlDpF~GSGTT~~AA~-~lg--R~~Ig~El~~~y~~~a~~Rl~~~  295 (320)
T d1booa_         233 ARFPAKLPEFFIRM---LTEPDDLVVDIFGGSNTTGLVAE-RES--RKWISFEMKPEYVAASAFRFLDN  295 (320)
T ss_dssp             SCCCTHHHHHHHHH---HCCTTCEEEETTCTTCHHHHHHH-HTT--CEEEEEESCHHHHHHHHGGGSCS
T ss_pred             CcCchHHHHHhhhh---cccCCCEEEecCCCCcHHHHHHH-HcC--CcEEEEeCCHHHHHHHHHHHHhc
Confidence            45677888888886   45799999999999999888765 444  89999999999999999887653

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.30  E-value=0.00024  Score=59.86  Aligned_cols=95  Identities=25%  Similarity=0.323  Sum_probs=69.8

Q ss_pred             cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC------CC
Q psy7829         130 HLVDGAKVLDLGSGS-GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE------GY  202 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~------~~  202 (511)
                      .+++|++||=+|||. |..+..+++..+. .+|+++|.++..++.+++.         +.+  +++.-.-..      ..
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~l---------Ga~--~~i~~~~~~~~~~v~~~   91 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAKFY---------GAT--DILNYKNGHIEDQVMKL   91 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHHHH---------TCS--EEECGGGSCHHHHHHHH
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhcccc-cccccccchhhhHHHHHhh---------Ccc--ccccccchhHHHHHHHH
Confidence            488999999999997 7888889988743 4699999999999888764         111  122111110      01


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhhcccCcEEEE
Q psy7829         203 LPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILA  236 (511)
Q Consensus       203 ~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~l~~  236 (511)
                      .....+|+|+-...-....+...+.++|+|++++
T Consensus        92 t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~  125 (174)
T d1jqba2          92 TNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISN  125 (174)
T ss_dssp             TTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEE
T ss_pred             hhccCcceEEEccCCHHHHHHHHHHHhcCCEEEE
Confidence            1224599999888777778899999999999988

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.30  E-value=4.8e-05  Score=69.59  Aligned_cols=60  Identities=17%  Similarity=0.163  Sum_probs=49.3

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc
Q psy7829         354 PSSERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS  419 (511)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~  419 (511)
                      +-+...+.+++..   -..+|+.|||--||||..+.+..+. +  -+.+|+|++++..+.+.+++.
T Consensus       191 ~kP~~L~~~~I~~---~s~~gdiVLDpF~GSGTT~~Aa~~l-g--R~~ig~El~~~y~~~a~~Ri~  250 (279)
T d1eg2a_         191 QKPAAVIERLVRA---LSHPGSTVLDFFAGSGVTARVAIQE-G--RNSICTDAAPVFKEYYQKQLT  250 (279)
T ss_dssp             CCCHHHHHHHHHH---HSCTTCEEEETTCTTCHHHHHHHHH-T--CEEEEEESSTHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHh---hcCCCCEEEecCCCCcHHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHHH
Confidence            4566778888875   4579999999999999998876654 3  799999999999888887765

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.27  E-value=8.8e-05  Score=64.86  Aligned_cols=107  Identities=18%  Similarity=0.030  Sum_probs=66.0

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCcc
Q psy7829         130 HLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYD  209 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  209 (511)
                      .++++.+|+|+|||.|..+..++... +...|.|+++--...+     ...... .+..+-+++...+-.... +.+..|
T Consensus        63 ~~~~~~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e-----~P~~~~-~~~~ni~~~~~~~dv~~l-~~~~~D  134 (257)
T d2p41a1          63 LVTPEGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHE-----EPIPMS-TYGWNLVRLQSGVDVFFI-PPERCD  134 (257)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSC-----CCCCCC-STTGGGEEEECSCCTTTS-CCCCCS
T ss_pred             CccCCCeEEEecCCCChHHHHHHhhc-CCCceeEEEecCcccc-----CCcccc-ccccccccchhhhhHHhc-CCCcCC
Confidence            46788899999999999999998874 4456778877322100     000000 011122455544432222 347899


Q ss_pred             EEEecCCCC------------chHHHHHhhcccCcEEEEEEccCCCc
Q psy7829         210 VIYYGGCVS------------EVPSRVLNQLKKGGRILAPIGPMDDF  244 (511)
Q Consensus       210 ~I~~~~~~~------------~~~~~~~~~LkpgG~l~~~~~~~~~~  244 (511)
                      .|+|+.+-.            .+++-+.++|+|||.+++=+..+...
T Consensus       135 ~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~  181 (257)
T d2p41a1         135 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMS  181 (257)
T ss_dssp             EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSH
T ss_pred             EEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCCh
Confidence            999986531            12355678999999999877654443

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.27  E-value=0.00021  Score=63.17  Aligned_cols=82  Identities=18%  Similarity=0.239  Sum_probs=61.2

Q ss_pred             CEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCc----CCCCCeEEEEccCCCCCC-CCCCcc
Q psy7829         135 AKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDL----LDSGRVRIVEADAREGYL-PEAPYD  209 (511)
Q Consensus       135 ~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~----~~~~~v~~~~~d~~~~~~-~~~~fD  209 (511)
                      .+|||.-||.|..+..+|...   ++|+++|.++.+....++.+.+...+.    ....|++++++|..+... ....||
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G---~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~D  166 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ  166 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHT---CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred             CEEEECCCcccHHHHHHHhCC---CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCC
Confidence            489999999999999999874   369999999988877776665432100    012379999999764332 236799


Q ss_pred             EEEecCCCCc
Q psy7829         210 VIYYGGCVSE  219 (511)
Q Consensus       210 ~I~~~~~~~~  219 (511)
                      +|+.+++++.
T Consensus       167 vIYlDPMFp~  176 (250)
T d2oyra1         167 VVYLDPMFPH  176 (250)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEECCCCcc
Confidence            9999999853

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.27  E-value=0.00034  Score=65.07  Aligned_cols=77  Identities=16%  Similarity=0.174  Sum_probs=59.1

Q ss_pred             CHHHHHHHHHHhhcC----CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccccc
Q psy7829         356 SERSIAHILDLCYLN----LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETI  431 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~----~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~  431 (511)
                      .+..+..++..+.+.    -..++.|||||+|.|.+|..+....+| .+|++||+|......-.+.+...++.++++|..
T Consensus        22 d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~-~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l  100 (322)
T d1i4wa_          22 NPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCP-RQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPY  100 (322)
T ss_dssp             CHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCC-SEEEEECCCHHHHHHHHHHTTTSSCEEECSCTT
T ss_pred             CHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHhccCCCcEEEeCchh
Confidence            456777777762222    125778999999999999999877643 689999999988887777776778899888866


Q ss_pred             cc
Q psy7829         432 EI  433 (511)
Q Consensus       432 ~~  433 (511)
                      .+
T Consensus       101 ~~  102 (322)
T d1i4wa_         101 DW  102 (322)
T ss_dssp             CH
T ss_pred             hc
Confidence            43

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.22  E-value=0.00029  Score=61.99  Aligned_cols=115  Identities=13%  Similarity=0.124  Sum_probs=67.8

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHh---CCCcEEEEEcCCHHHHHHHHhhccccccccccccccc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLV---GPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIE  432 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~---~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~  432 (511)
                      .|.++...-++  +.-.+..+|||||++.|+.++.++..+   +++++|+++|+++......  .....++.++++|...
T Consensus        65 ~p~d~~~~~el--i~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~--~~~~~~I~~i~gDs~~  140 (232)
T d2bm8a1          65 DPDTQAVYHDM--LWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP--ASDMENITLHQGDCSD  140 (232)
T ss_dssp             CHHHHHHHHHH--HHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC--GGGCTTEEEEECCSSC
T ss_pred             CHHHHHHHHHH--HHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh--hccccceeeeeccccc
Confidence            45666444443  222357799999999999999888654   5679999999986543322  2234678888887532


Q ss_pred             cccccchhhhhcccCCcEEEEEcCCccH--HH-HHHHHHhCCCcEEEEh
Q psy7829         433 IIPHILDLCYLNLHRGAKVLEIGSGSGY--LA-TLMAHLVGPTGHVTGL  478 (511)
Q Consensus       433 ~l~~~~d~i~~~l~~~~~vLD~~~g~g~--~~-~~l~~~l~~~g~v~~~  478 (511)
                      ..  .+..+ ........++|-+ -+-.  +. ..+.+.+++||-++.-
T Consensus       141 ~~--~~~~l-~~~~~dlIfID~~-H~~~~v~~~~~~~~lLk~GG~iIve  185 (232)
T d2bm8a1         141 LT--TFEHL-REMAHPLIFIDNA-HANTFNIMKWAVDHLLEEGDYFIIE  185 (232)
T ss_dssp             SG--GGGGG-SSSCSSEEEEESS-CSSHHHHHHHHHHHTCCTTCEEEEC
T ss_pred             HH--HHHHH-HhcCCCEEEEcCC-cchHHHHHHHHHhcccCcCCEEEEE
Confidence            11  11111 1223334566633 2222  22 2355778887766654

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.21  E-value=0.00016  Score=60.63  Aligned_cols=96  Identities=17%  Similarity=0.170  Sum_probs=65.5

Q ss_pred             cCCCCCEEEEEcCC-ccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEE-ccCCCCC-CCCC
Q psy7829         130 HLVDGAKVLDLGSG-SGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVE-ADAREGY-LPEA  206 (511)
Q Consensus       130 ~~~~~~~vLDiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~-~d~~~~~-~~~~  206 (511)
                      .+++|++||-+|+| .|..+..+++..+  ++|+++|.+++.++.+++.         +.+  .++. .+-.+.. ...+
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~a~~l---------Ga~--~~i~~~~~~~~~~~~~~   90 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAMKM---------GAD--HYIATLEEGDWGEKYFD   90 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHHH---------TCS--EEEEGGGTSCHHHHSCS
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhcc--ccccccccchhHHHHhhcc---------CCc--EEeeccchHHHHHhhhc
Confidence            47899999999999 4778888888874  5899999999999988764         222  1222 1111100 1235


Q ss_pred             CccEEEecCCCC--chHHHHHhhcccCcEEEEEEc
Q psy7829         207 PYDVIYYGGCVS--EVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       207 ~fD~I~~~~~~~--~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      .||.|+......  .......+.|+|+|++++ ++
T Consensus        91 ~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~-~G  124 (168)
T d1piwa2          91 TFDLIVVCASSLTDIDFNIMPKAMKVGGRIVS-IS  124 (168)
T ss_dssp             CEEEEEECCSCSTTCCTTTGGGGEEEEEEEEE-CC
T ss_pred             ccceEEEEecCCccchHHHHHHHhhccceEEE-ec
Confidence            799888653322  224578899999999987 44

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.16  E-value=0.00023  Score=63.45  Aligned_cols=59  Identities=12%  Similarity=0.197  Sum_probs=43.0

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccc
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEII  434 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l  434 (511)
                      .....+|||||||+|.+++.+++.. |+.+++.+|.- +.++   +.....+++++.+|..+.+
T Consensus        79 f~~~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~---~~~~~~ri~~~~gd~~~~~  137 (244)
T d1fp1d2          79 FEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDLP-QVIE---NAPPLSGIEHVGGDMFASV  137 (244)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECH-HHHT---TCCCCTTEEEEECCTTTCC
T ss_pred             ccCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEecch-hhhh---ccCCCCCeEEecCCccccc
Confidence            4567899999999999999999998 88999999973 3322   2222456777766654433

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.15  E-value=0.00056  Score=57.93  Aligned_cols=95  Identities=19%  Similarity=0.189  Sum_probs=68.0

Q ss_pred             CCCCCEEEEEcCCc-cHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc--CCC------C
Q psy7829         131 LVDGAKVLDLGSGS-GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD--ARE------G  201 (511)
Q Consensus       131 ~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d--~~~------~  201 (511)
                      +++|.+||-+|||. |..+..+++..+. .+|+++|.+++.++.+++.    |     .+. .+-..+  ..+      .
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga-~~Vi~~~~~~~~~~~a~~l----G-----a~~-vi~~~~~~~~~~~~~i~~   94 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGA-ENVIVIAGSPNRLKLAEEI----G-----ADL-TLNRRETSVEERRKAIMD   94 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTB-SEEEEEESCHHHHHHHHHT----T-----CSE-EEETTTSCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCccchhheeccccccc-ccccccccccccccccccc----c-----ceE-EEeccccchHHHHHHHHH
Confidence            67899999999985 7888899998753 3799999999999988753    1     111 111111  100      0


Q ss_pred             CCCCCCccEEEecCCCCchHHHHHhhcccCcEEEE
Q psy7829         202 YLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILA  236 (511)
Q Consensus       202 ~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~l~~  236 (511)
                      ......+|+|+-...-....+...+.|+|||++++
T Consensus        95 ~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~  129 (182)
T d1vj0a2          95 ITHGRGADFILEATGDSRALLEGSELLRRGGFYSV  129 (182)
T ss_dssp             HTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEE
T ss_pred             hhCCCCceEEeecCCchhHHHHHHHHhcCCCEEEE
Confidence            11224599999877767777899999999999976

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00016  Score=65.51  Aligned_cols=48  Identities=19%  Similarity=0.077  Sum_probs=38.3

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS  419 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~  419 (511)
                      ....|.+|||+|||+|.+++..+....  .+|+++|.++.+++.+++.+.
T Consensus        51 g~~~g~~vLDiGcG~g~~~~~~~~~~~--~~v~~~D~S~~~i~~~~~~~~   98 (263)
T d2g72a1          51 GEVSGRTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWLQ   98 (263)
T ss_dssp             SCSCCSEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHHT
T ss_pred             CCCCCcEEEEeccCCCHHHHHHhcccC--CeEEEEeCCHHHHHHHHHHHh
Confidence            556789999999999988765554442  589999999999998876654

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.10  E-value=0.00036  Score=63.58  Aligned_cols=107  Identities=10%  Similarity=-0.020  Sum_probs=71.7

Q ss_pred             CCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-------ccccccccccccccccc---cch
Q psy7829         370 NLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-------TNHIDLIANETIEIIPH---ILD  439 (511)
Q Consensus       370 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-------~~~v~~i~~d~~~~l~~---~~d  439 (511)
                      ..+...+||-||.|.|..+..+.+.. +..+|+.+|+++++++.+++-+.       .++++++.+|+.+.+..   .+|
T Consensus        86 ~~~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD  164 (295)
T d1inla_          86 LHPNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFD  164 (295)
T ss_dssp             HSSSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEE
T ss_pred             hCCCCceEEEecCCchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCC
Confidence            34567899999999999998887654 45799999999998888766543       46688888887776643   456


Q ss_pred             hhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829         440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       440 ~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~  477 (511)
                      .+..++..+....--.--+-.+-..+.+.|+|+|.++.
T Consensus       165 vIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~  202 (295)
T d1inla_         165 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSA  202 (295)
T ss_dssp             EEEEEC----------CCSHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEE
Confidence            55554433211100001234456677788999998875

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.08  E-value=0.0004  Score=64.04  Aligned_cols=107  Identities=11%  Similarity=0.109  Sum_probs=71.3

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc--------cccccccccccccccc---cc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS--------TNHIDLIANETIEIIP---HI  437 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~--------~~~v~~i~~d~~~~l~---~~  437 (511)
                      +..+..++||.||.|.|..+..+.+.. +..+|+.+|++++.++.+++.+.        .++++++.+|+.+.+.   ..
T Consensus        73 ~~~~~pk~VLiiG~G~G~~~~~ll~~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~  151 (312)
T d1uira_          73 LTHPEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEER  151 (312)
T ss_dssp             HHSSCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCC
T ss_pred             hhCCCcceEEEeCCCchHHHHHHHhcC-CcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCc
Confidence            345677899999999999999887654 55799999999999988776652        4568888888777654   33


Q ss_pred             chhhhhcccCCcEEEEEcC---CccHHHHHHHHHhCCCcEEEE
Q psy7829         438 LDLCYLNLHRGAKVLEIGS---GSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       438 ~d~i~~~l~~~~~vLD~~~---g~g~~~~~l~~~l~~~g~v~~  477 (511)
                      +|.++.++...... +..+   -+-.+-..+.+.|+|+|-++.
T Consensus       152 yDvIi~D~~dp~~~-~~~~~~L~t~eF~~~~~~~L~p~Gvlv~  193 (312)
T d1uira_         152 YDVVIIDLTDPVGE-DNPARLLYTVEFYRLVKAHLNPGGVMGM  193 (312)
T ss_dssp             EEEEEEECCCCBST-TCGGGGGSSHHHHHHHHHTEEEEEEEEE
T ss_pred             ccEEEEeCCCcccc-cchhhhhhhHHHHHHHHHhcCCCceEEE
Confidence            45444333211000 0000   022345667788999997764

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.08  E-value=0.00055  Score=60.18  Aligned_cols=112  Identities=14%  Similarity=0.202  Sum_probs=76.4

Q ss_pred             CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCH---HHHHHHHhhcccccccccccccccccc-----ccchhhhhc
Q psy7829         373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMM---DIAIESIANISTNHIDLIANETIEIIP-----HILDLCYLN  444 (511)
Q Consensus       373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~---~~~~~~~~~~~~~~v~~i~~d~~~~l~-----~~~d~i~~~  444 (511)
                      .+.+++|||||.|.=++.+|-.. |+.+++-+|.+.   ...+...+.++..|+.++++.......     ..+|.+...
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~-p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR  148 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR  148 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhC-CCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEh
Confidence            57899999999999999998666 889999999884   455567788899999887664322111     122222110


Q ss_pred             ccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh-----HHHHHHHHHHHHhcCC
Q psy7829         445 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL-----EHMMDIAIESIANIST  494 (511)
Q Consensus       445 l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~-----~~ml~~a~~~~~~~~~  494 (511)
                               .-+....+.....+.++++|.++..     .+=++.+++.....+.
T Consensus       149 ---------Ava~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~  194 (239)
T d1xdza_         149 ---------AVARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGG  194 (239)
T ss_dssp             ---------CCSCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTE
T ss_pred             ---------hhhCHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCC
Confidence                     1134445555666778889998887     4446777777766654

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.05  E-value=0.00053  Score=60.03  Aligned_cols=55  Identities=18%  Similarity=0.221  Sum_probs=43.5

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHH
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAI  412 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~  412 (511)
                      ++..+..|+.+  +...++++|||.|||+|.+...+.+......+++++|+++..+.
T Consensus         4 P~~i~~~m~~l--~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~   58 (223)
T d2ih2a1           4 PPEVVDFMVSL--AEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD   58 (223)
T ss_dssp             CHHHHHHHHHH--CCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC
T ss_pred             CHHHHHHHHHh--cCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh
Confidence            34555556666  77889999999999999999888877755678999999876543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.0017  Score=54.16  Aligned_cols=95  Identities=16%  Similarity=0.167  Sum_probs=67.9

Q ss_pred             cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC------
Q psy7829         130 HLVDGAKVLDLGSGS-GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY------  202 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~------  202 (511)
                      .++++++||=+|||+ |..+..+++..+. .+|+++|.++..++.|++.         +.+.+  +..+-....      
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~-~~Vi~~d~~~~rl~~a~~~---------Ga~~~--~~~~~~~~~~~~~~~   90 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAKEI---------GADLV--LQISKESPQEIARKV   90 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHT---------TCSEE--EECSSCCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcCC-ceEEeccCCHHHHHHHHHh---------CCccc--ccccccccccccccc
Confidence            378999999999987 5567777777643 4799999999999988764         12211  111111100      


Q ss_pred             --CCCCCccEEEecCCCCchHHHHHhhcccCcEEEE
Q psy7829         203 --LPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILA  236 (511)
Q Consensus       203 --~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~l~~  236 (511)
                        .....+|+|+-...-....+...+.+++||++++
T Consensus        91 ~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~  126 (171)
T d1pl8a2          91 EGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVL  126 (171)
T ss_dssp             HHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEE
T ss_pred             cccCCCCceEEEeccCCchhHHHHHHHhcCCCEEEE
Confidence              0124689999887777778899999999999987

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.97  E-value=0.00051  Score=62.24  Aligned_cols=98  Identities=17%  Similarity=0.164  Sum_probs=68.8

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-------------cccccccccccccccc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-------------TNHIDLIANETIEIIP  435 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-------------~~~v~~i~~d~~~~l~  435 (511)
                      ...+...+||-||.|.|..+..+.+.  +..+|+.+|+++++++.+++-+.             .++++++.+|+...+.
T Consensus        68 ~~~~~p~~vLiiG~G~G~~~~~~l~~--~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~  145 (276)
T d1mjfa_          68 LAHPKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK  145 (276)
T ss_dssp             HHSSCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH
T ss_pred             hcCCCCceEEEecCCchHHHHHHHHh--CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHh
Confidence            34567889999999999999887653  33689999999999998876543             3457788888766543


Q ss_pred             --ccchhhhhcccCCcEEEEEcCCc--------cHHHHHHHHHhCCCcEEEE
Q psy7829         436 --HILDLCYLNLHRGAKVLEIGSGS--------GYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       436 --~~~d~i~~~l~~~~~vLD~~~g~--------g~~~~~l~~~l~~~g~v~~  477 (511)
                        ..+|.|         ++|+..+.        -.+...+.+.|+|+|-++.
T Consensus       146 ~~~~yDvI---------i~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~  188 (276)
T d1mjfa_         146 NNRGFDVI---------IADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVT  188 (276)
T ss_dssp             HCCCEEEE---------EEECCCCC-----TTSHHHHHHHHHHEEEEEEEEE
T ss_pred             ccCCCCEE---------EEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEE
Confidence              224444         44444432        2335567788999998764

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.93  E-value=0.0021  Score=54.81  Aligned_cols=95  Identities=18%  Similarity=0.159  Sum_probs=65.8

Q ss_pred             cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC-------
Q psy7829         130 HLVDGAKVLDLGSGS-GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG-------  201 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-------  201 (511)
                      .+++|++||-+|||. |..+..+++..+ ..+|+++|.++..++.|++.-         .+  .++. .....       
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~~~~rl~~a~~~G---------a~--~~~~-~~~~~~~~~i~~   88 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKAQG---------FE--IADL-SLDTPLHEQIAA   88 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTT---------CE--EEET-TSSSCHHHHHHH
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhhc-ccceeeecccchhhHhhhhcc---------cc--EEEe-CCCcCHHHHHHH
Confidence            488999999999998 667788888764 468999999999999887641         11  1111 11111       


Q ss_pred             CCCCCCccEEEecCCC---------------CchHHHHHhhcccCcEEEEE
Q psy7829         202 YLPEAPYDVIYYGGCV---------------SEVPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       202 ~~~~~~fD~I~~~~~~---------------~~~~~~~~~~LkpgG~l~~~  237 (511)
                      ......+|+++-....               ....+.+.+.++|||++++.
T Consensus        89 ~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~  139 (195)
T d1kola2          89 LLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  139 (195)
T ss_dssp             HHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             HhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence            1123468998865432               23458899999999999873

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.90  E-value=0.0016  Score=60.35  Aligned_cols=78  Identities=22%  Similarity=0.268  Sum_probs=61.2

Q ss_pred             ccchhHHHHHHHHHHhh--c--CCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCC
Q psy7829         113 VMNAPNQIADAAENLKL--H--LVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDS  188 (511)
Q Consensus       113 ~~~~p~~~~~~~~~l~~--~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~  188 (511)
                      .+..+.+...+++.+.-  .  ...+..|||||.|.|.+|..+.+...+ .+|+++|+++...+..++.+.        .
T Consensus        19 fL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~-~~v~~iE~D~~~~~~L~~~~~--------~   89 (322)
T d1i4wa_          19 YLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCP-RQYSLLEKRSSLYKFLNAKFE--------G   89 (322)
T ss_dssp             CBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCC-SEEEEECCCHHHHHHHHHHTT--------T
T ss_pred             ccCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHhcc--------C
Confidence            35677788888888741  1  124678999999999999999987633 479999999999999887753        2


Q ss_pred             CCeEEEEccCC
Q psy7829         189 GRVRIVEADAR  199 (511)
Q Consensus       189 ~~v~~~~~d~~  199 (511)
                      ++++++.+|+.
T Consensus        90 ~~~~ii~~D~l  100 (322)
T d1i4wa_          90 SPLQILKRDPY  100 (322)
T ss_dssp             SSCEEECSCTT
T ss_pred             CCcEEEeCchh
Confidence            47899999975

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.85  E-value=0.0013  Score=55.05  Aligned_cols=94  Identities=13%  Similarity=0.267  Sum_probs=68.0

Q ss_pred             CCCCCEEEEEcCCc-cHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC-----CC
Q psy7829         131 LVDGAKVLDLGSGS-GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY-----LP  204 (511)
Q Consensus       131 ~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-----~~  204 (511)
                      +++|++||=+|||. |..+..+++..+. .+++.+|.++..++.+++.         +.+  +++..+-.+..     ..
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~~a~~~---------Ga~--~~i~~~~~~~~~~i~~~t   93 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQL---------GAT--HVINSKTQDPVAAIKEIT   93 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHHH---------TCS--EEEETTTSCHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCHHHhhhhhccccccc-ceeeeeccHHHHHHHHHHc---------CCe--EEEeCCCcCHHHHHHHHc
Confidence            78999999999986 4567788888754 5788899999999988764         111  23322211100     01


Q ss_pred             CCCccEEEecCCCCchHHHHHhhcccCcEEEE
Q psy7829         205 EAPYDVIYYGGCVSEVPSRVLNQLKKGGRILA  236 (511)
Q Consensus       205 ~~~fD~I~~~~~~~~~~~~~~~~LkpgG~l~~  236 (511)
                      ++.||+|+-........+...+.++|+|++++
T Consensus        94 ~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~  125 (174)
T d1f8fa2          94 DGGVNFALESTGSPEILKQGVDALGILGKIAV  125 (174)
T ss_dssp             TSCEEEEEECSCCHHHHHHHHHTEEEEEEEEE
T ss_pred             CCCCcEEEEcCCcHHHHHHHHhcccCceEEEE
Confidence            35799999887777777899999999999987

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.85  E-value=0.0045  Score=51.33  Aligned_cols=105  Identities=16%  Similarity=0.152  Sum_probs=63.1

Q ss_pred             cCCCCCCEEEEEecc-ccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccccccchhhhhccc-
Q psy7829         369 LNLHRGAKVLEIGSG-SGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIPHILDLCYLNLH-  446 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l~~~~d~i~~~l~-  446 (511)
                      ..+++|++||=+||| .|.+++.+++..|  .+|+++|.+++..+.+++. +....-... ...+........+..... 
T Consensus        22 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G--a~vi~v~~~~~r~~~a~~~-ga~~~~~~~-~~~~~~~~~~~~~~~~~g~   97 (170)
T d1e3ja2          22 AGVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKNC-GADVTLVVD-PAKEEESSIIERIRSAIGD   97 (170)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHT-TCSEEEECC-TTTSCHHHHHHHHHHHSSS
T ss_pred             hCCCCCCEEEEEcccccchhhHhhHhhhc--ccccccchHHHHHHHHHHc-CCcEEEecc-ccccccchhhhhhhccccc
Confidence            678999999999998 5667788888876  7999999999988777653 322111111 111111111111111111 


Q ss_pred             CCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         447 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       447 ~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .-..++|. .|.........+.++++|+++.+
T Consensus        98 g~D~vid~-~g~~~~~~~a~~~~~~~G~iv~~  128 (170)
T d1e3ja2          98 LPNVTIDC-SGNEKCITIGINITRTGGTLMLV  128 (170)
T ss_dssp             CCSEEEEC-SCCHHHHHHHHHHSCTTCEEEEC
T ss_pred             CCceeeec-CCChHHHHHHHHHHhcCCceEEE
Confidence            12355544 34444455566788999998877

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=96.76  E-value=0.00054  Score=58.07  Aligned_cols=74  Identities=18%  Similarity=0.218  Sum_probs=50.7

Q ss_pred             CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHH---HHhhccccc--cccccccccccc-----cccchhhh
Q psy7829         373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE---SIANISTNH--IDLIANETIEII-----PHILDLCY  442 (511)
Q Consensus       373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~---~~~~~~~~~--v~~i~~d~~~~l-----~~~~d~i~  442 (511)
                      .+.+|||+.||||.+++.++.+..  .+|+.||.+...++.   +.++++..+  ..++..+....+     ...+|.++
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA--~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIF  120 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVF  120 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEE
T ss_pred             ccceEeecccCccceeeeeeeecc--eeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEE
Confidence            688999999999999999998864  699999999766654   444444332  344455543332     22467776


Q ss_pred             hcccCC
Q psy7829         443 LNLHRG  448 (511)
Q Consensus       443 ~~l~~~  448 (511)
                      .+++.+
T Consensus       121 lDPPY~  126 (183)
T d2ifta1         121 LDPPFH  126 (183)
T ss_dssp             ECCCSS
T ss_pred             echhHh
Confidence            665543

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.0017  Score=54.05  Aligned_cols=95  Identities=19%  Similarity=0.189  Sum_probs=67.7

Q ss_pred             cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCC-CCCCCCC
Q psy7829         130 HLVDGAKVLDLGSGS-GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADARE-GYLPEAP  207 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~  207 (511)
                      .+++|++||=+|||. |.++..+++..+  .+++++|.+++..+.+++.         +.+.  ++..+-.. .......
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak~~G--a~~i~~~~~~~~~~~a~~l---------Gad~--~i~~~~~~~~~~~~~~   93 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREAAKAL---------GADE--VVNSRNADEMAAHLKS   93 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHHH---------TCSE--EEETTCHHHHHTTTTC
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhhccc--ccchhhccchhHHHHHhcc---------CCcE--EEECchhhHHHHhcCC
Confidence            378999999999986 778888898874  4788999999888777653         2221  22211111 1112356


Q ss_pred             ccEEEecCCCCchHHHHHhhcccCcEEEEE
Q psy7829         208 YDVIYYGGCVSEVPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       208 fD~I~~~~~~~~~~~~~~~~LkpgG~l~~~  237 (511)
                      +|.++....-........+.++|+|++++.
T Consensus        94 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~~  123 (168)
T d1uufa2          94 FDFILNTVAAPHNLDDFTTLLKRDGTMTLV  123 (168)
T ss_dssp             EEEEEECCSSCCCHHHHHTTEEEEEEEEEC
T ss_pred             CceeeeeeecchhHHHHHHHHhcCCEEEEe
Confidence            999998777666678899999999999873

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.69  E-value=0.0026  Score=53.18  Aligned_cols=97  Identities=12%  Similarity=0.183  Sum_probs=70.5

Q ss_pred             cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC------
Q psy7829         130 HLVDGAKVLDLGSGS-GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY------  202 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~------  202 (511)
                      .+++|++||=+|||. |..+..+++..+ ..+|+.+|.+++.++.|++.         +.+.  ++...-.+..      
T Consensus        25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a~~~---------Ga~~--~i~~~~~~~~~~~~~~   92 (174)
T d1e3ia2          25 KVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKAL---------GATD--CLNPRELDKPVQDVIT   92 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHT---------TCSE--EECGGGCSSCHHHHHH
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHhC-CceeeeeccchHHHHHHHHh---------CCCc--ccCCccchhhhhhhHh
Confidence            378999999999998 888899999885 35799999999988888764         1211  2211111100      


Q ss_pred             -CCCCCccEEEecCCCCchHHHHHhhcccC-cEEEEEEc
Q psy7829         203 -LPEAPYDVIYYGGCVSEVPSRVLNQLKKG-GRILAPIG  239 (511)
Q Consensus       203 -~~~~~fD~I~~~~~~~~~~~~~~~~Lkpg-G~l~~~~~  239 (511)
                       ...+.+|+++-....+.......+.++|| |++++ ++
T Consensus        93 ~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~-vG  130 (174)
T d1e3ia2          93 ELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTV-VG  130 (174)
T ss_dssp             HHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEE-CC
T ss_pred             hhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEe-cC
Confidence             01256999998877777788999999996 99987 44

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.68  E-value=0.00079  Score=62.87  Aligned_cols=123  Identities=14%  Similarity=0.160  Sum_probs=73.5

Q ss_pred             CHHHHHHHHHHh---hcCCCCCCEEEEEeccccHHHHHHHHHhC----CCcEEEEEcCCHHHHHHHHhhccc--cccccc
Q psy7829         356 SERSIAHILDLC---YLNLHRGAKVLEIGSGSGYLATLMAHLVG----PTGHVTGLEHMMDIAIESIANIST--NHIDLI  426 (511)
Q Consensus       356 ~~~~~~~~~~~~---~~~~~~~~~vLdiG~G~G~~~~~la~~~~----~~~~v~~id~~~~~~~~~~~~~~~--~~v~~i  426 (511)
                      ||+.+..++...   .+..+++.+|||.|||+|.+.+.+...+.    +..+++|+|+++.+++.++.+...  .+..+.
T Consensus        97 TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~  176 (328)
T d2f8la1          97 TPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLL  176 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEE
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhh
Confidence            455554433321   13566788999999999999988876542    334899999999888887766553  233444


Q ss_pred             ccccccc-ccccchhhhhcccCCcEEEEE---------cCCc----cHHHHHHHHHhCCCcEEEEh
Q psy7829         427 ANETIEI-IPHILDLCYLNLHRGAKVLEI---------GSGS----GYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       427 ~~d~~~~-l~~~~d~i~~~l~~~~~vLD~---------~~g~----g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +++.... ....+|.+..|++-+....+-         ..|.    ..+.....+.++|+|++..+
T Consensus       177 ~~d~~~~~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I  242 (328)
T d2f8la1         177 HQDGLANLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFL  242 (328)
T ss_dssp             ESCTTSCCCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccccccccccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEE
Confidence            4443332 223467666665543211100         0111    11344456778999987766

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.66  E-value=0.002  Score=58.80  Aligned_cols=107  Identities=14%  Similarity=0.094  Sum_probs=70.1

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-------cccccccccccccccc---ccc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-------TNHIDLIANETIEIIP---HIL  438 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-------~~~v~~i~~d~~~~l~---~~~  438 (511)
                      +..+...+||-||-|.|..+..+.+.. +-.+|+.+|+++++++.+++-+.       .++++++.+|+.+.+.   ..+
T Consensus       102 ~~~~~pk~VLIiGgG~G~~~rellk~~-~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~y  180 (312)
T d2b2ca1         102 FAHPDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEF  180 (312)
T ss_dssp             HHSSSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCE
T ss_pred             hcCCCCCeEEEeCCCchHHHHHHHHcC-CcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCC
Confidence            345677899999999999999987654 44799999999999998876553       3667888888777653   345


Q ss_pred             hhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829         439 DLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       439 d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~  477 (511)
                      |.+..+...+.... ..--+-.+-..+.+.|+|+|-++.
T Consensus       181 DvII~D~~dp~~~~-~~L~t~eFy~~~~~~L~~~Gi~v~  218 (312)
T d2b2ca1         181 DVIITDSSDPVGPA-ESLFGQSYYELLRDALKEDGILSS  218 (312)
T ss_dssp             EEEEECCC--------------HHHHHHHHEEEEEEEEE
T ss_pred             CEEEEcCCCCCCcc-hhhhhHHHHHHHHhhcCCCcEEEE
Confidence            66655543321100 001122334456778899888875

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.65  E-value=0.00071  Score=60.17  Aligned_cols=35  Identities=14%  Similarity=0.250  Sum_probs=31.4

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCC
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHM  407 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~  407 (511)
                      ....+|||||||+|..++.+++.. |+.+++.+|.-
T Consensus        80 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp  114 (243)
T d1kyza2          80 EGLKSLVDVGGGTGAVINTIVSKY-PTIKGINFDLP  114 (243)
T ss_dssp             SSCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEECT
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEcccH
Confidence            345789999999999999999998 88999999974

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.55  E-value=0.0056  Score=52.06  Aligned_cols=48  Identities=23%  Similarity=0.217  Sum_probs=40.0

Q ss_pred             cCCCCCCEEEEEeccc-cHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhh
Q psy7829         369 LNLHRGAKVLEIGSGS-GYLATLMAHLVGPTGHVTGLEHMMDIAIESIAN  417 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~  417 (511)
                      ..+++|++||-+|||. |..++.+|+..+. .+|+++|.+++..+.+.+.
T Consensus        21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga-~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2          21 AGVGPGSTVYVAGAGPVGLAAAASARLLGA-AVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHT
T ss_pred             hCCCCCCEEEEECcCHHHHHHHHHHHhhcc-cceeeecccchhhHhhhhc
Confidence            7899999999999998 6577888887753 6999999999888776543

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.52  E-value=0.0029  Score=52.33  Aligned_cols=93  Identities=15%  Similarity=0.143  Sum_probs=62.7

Q ss_pred             CCCCCEEEEEcCCc-cHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC----CCC
Q psy7829         131 LVDGAKVLDLGSGS-GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY----LPE  205 (511)
Q Consensus       131 ~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~  205 (511)
                      ++++++||=+|+|. |..+..+++..+  .+|+++|.+++.++.+++.         +.+  .++..+-.+..    ...
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G--~~Vi~~~~~~~~~~~a~~~---------Ga~--~~i~~~~~~~~~~~~~~~   91 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAMG--LHVAAIDIDDAKLELARKL---------GAS--LTVNARQEDPVEAIQRDI   91 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHT---------TCS--EEEETTTSCHHHHHHHHH
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHcC--CccceecchhhHHHhhhcc---------Ccc--ccccccchhHHHHHHHhh
Confidence            78999999999986 677788888874  6899999999998888753         121  22222211100    001


Q ss_pred             CCccEEEecCCCCchHHHHHhhcccCcEEEE
Q psy7829         206 APYDVIYYGGCVSEVPSRVLNQLKKGGRILA  236 (511)
Q Consensus       206 ~~fD~I~~~~~~~~~~~~~~~~LkpgG~l~~  236 (511)
                      ..+|.++....-........+.|+|+|++++
T Consensus        92 ~g~~~~i~~~~~~~~~~~~~~~l~~~G~iv~  122 (166)
T d1llua2          92 GGAHGVLVTAVSNSAFGQAIGMARRGGTIAL  122 (166)
T ss_dssp             SSEEEEEECCSCHHHHHHHHTTEEEEEEEEE
T ss_pred             cCCcccccccccchHHHHHHHHhcCCcEEEE
Confidence            2345455444445566788999999999987

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.0043  Score=56.05  Aligned_cols=107  Identities=17%  Similarity=0.103  Sum_probs=72.0

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc-------ccccccccccccccccc---ccc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI-------STNHIDLIANETIEIIP---HIL  438 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~-------~~~~v~~i~~d~~~~l~---~~~  438 (511)
                      +..+..++||-||-|.|..+..+.+.. +..+|+.+|++++.++.+++-+       ..++++++.+|+.+.+.   ..+
T Consensus        74 ~~~~~pk~vLiiGgG~G~~~~~~l~~~-~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~y  152 (285)
T d2o07a1          74 CSHPNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAF  152 (285)
T ss_dssp             TTSSSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCE
T ss_pred             hhCcCcCeEEEeCCCchHHHHHHHHcC-CcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCC
Confidence            455677899999999999999987654 4579999999999998887654       34678888888777664   346


Q ss_pred             hhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEE
Q psy7829         439 DLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTG  477 (511)
Q Consensus       439 d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~  477 (511)
                      |.+..++..+.... -.--+-.+-..+.+.|+|+|-++.
T Consensus       153 DvIi~D~~~p~~~~-~~L~t~eF~~~~~~~L~~~Gi~v~  190 (285)
T d2o07a1         153 DVIITDSSDPMGPA-ESLFKESYYQLMKTALKEDGVLCC  190 (285)
T ss_dssp             EEEEEECC------------CHHHHHHHHHEEEEEEEEE
T ss_pred             CEEEEcCCCCCCcc-cccccHHHHHHHHHhcCCCCeEEE
Confidence            66665544322110 000122335566788899888764

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.46  E-value=0.0053  Score=51.01  Aligned_cols=95  Identities=19%  Similarity=0.174  Sum_probs=67.0

Q ss_pred             cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCC--C---CCC
Q psy7829         130 HLVDGAKVLDLGSGS-GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAR--E---GYL  203 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~--~---~~~  203 (511)
                      .++++.+||-+|+|. |..+..+++..+. .+|+++|.+++.++.+++.-         .+  .++..+-.  +   ...
T Consensus        29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~-~~vv~~~~~~~k~~~~~~~g---------a~--~~i~~~~~~~~~~~~~~   96 (172)
T d1h2ba2          29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTP-ATVIALDVKEEKLKLAERLG---------AD--HVVDARRDPVKQVMELT   96 (172)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHCC-CEEEEEESSHHHHHHHHHTT---------CS--EEEETTSCHHHHHHHHT
T ss_pred             ccCCCCEEEEeCCChHHHHHHHHHHhhcC-cccccccchhHHHHHHhhcc---------cc--eeecCcccHHHHHHHhh
Confidence            367899999999987 4566777877753 57899999999888887642         11  22322211  0   001


Q ss_pred             CCCCccEEEecCCCCchHHHHHhhcccCcEEEE
Q psy7829         204 PEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILA  236 (511)
Q Consensus       204 ~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~l~~  236 (511)
                      ....+|+|+....-....+...+.|++||++++
T Consensus        97 ~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~  129 (172)
T d1h2ba2          97 RGRGVNVAMDFVGSQATVDYTPYLLGRMGRLII  129 (172)
T ss_dssp             TTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEE
T ss_pred             CCCCceEEEEecCcchHHHHHHHHHhCCCEEEE
Confidence            224599999887776677889999999999987

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.003  Score=52.97  Aligned_cols=37  Identities=16%  Similarity=0.454  Sum_probs=33.9

Q ss_pred             CCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCC
Q psy7829         371 LHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHM  407 (511)
Q Consensus       371 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~  407 (511)
                      ++++.+|||+||++|..+..+++..++.+.|+++|+.
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~   56 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLL   56 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESS
T ss_pred             cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecc
Confidence            4789999999999999999999988888999999964

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.38  E-value=0.0051  Score=55.24  Aligned_cols=121  Identities=10%  Similarity=0.075  Sum_probs=80.7

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc-------ccccccccccccccccc---ccc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANI-------STNHIDLIANETIEIIP---HIL  438 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~-------~~~~v~~i~~d~~~~l~---~~~  438 (511)
                      +..+...+||-||-|.|..+..+.+.. +..+|+.+|++++.++.+++.+       ..++++++.+|+...+.   ..+
T Consensus        71 ~~~~~p~~vLiiGgG~G~~~~~~l~~~-~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~y  149 (274)
T d1iy9a_          71 FTHPNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQY  149 (274)
T ss_dssp             HHSSSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCE
T ss_pred             hccCCcceEEecCCCCcHHHHHHHhcC-CcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCC
Confidence            344667899999999999999988654 4479999999999998877654       24568888888776654   345


Q ss_pred             hhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh-------HHHHHHHHHHHHh
Q psy7829         439 DLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL-------EHMMDIAIESIAN  491 (511)
Q Consensus       439 d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~-------~~ml~~a~~~~~~  491 (511)
                      |.+..++..+...- ..--+-.+-..+.+.|+|+|-++.-       ...+....+.+++
T Consensus       150 DvIi~D~~~p~~~~-~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~  208 (274)
T d1iy9a_         150 DVIMVDSTEPVGPA-VNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKE  208 (274)
T ss_dssp             EEEEESCSSCCSCC-CCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHT
T ss_pred             CEEEEcCCCCCCcc-hhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhh
Confidence            66555543322100 0001444566777889999988753       4444555555554

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.38  E-value=0.0065  Score=50.61  Aligned_cols=106  Identities=21%  Similarity=0.320  Sum_probs=63.8

Q ss_pred             HHHHHhhcCCCCCCEEEEEeccc-cHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccccccchh
Q psy7829         362 HILDLCYLNLHRGAKVLEIGSGS-GYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIPHILDL  440 (511)
Q Consensus       362 ~~~~~~~~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l~~~~d~  440 (511)
                      +.+..  ..+++|++||=+|||. |..++.+|+..|+ .+|+++|.+++..+.+++ ++...  ++.......    .+.
T Consensus        18 ~a~~~--a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~-lGa~~--~i~~~~~~~----~~~   87 (174)
T d1jqba2          18 HGAEL--ADIEMGSSVVVIGIGAVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAKF-YGATD--ILNYKNGHI----EDQ   87 (174)
T ss_dssp             HHHHH--TTCCTTCCEEEECCSHHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHHH-HTCSE--EECGGGSCH----HHH
T ss_pred             HHHHH--hCCCCCCEEEEEcCCcchhhhhhhhhcccc-cccccccchhhhHHHHHh-hCccc--cccccchhH----HHH
Confidence            33444  6889999999999997 7788899988763 479999999888776643 55322  111111111    111


Q ss_pred             hhhcccC-C-cEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         441 CYLNLHR-G-AKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       441 i~~~l~~-~-~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +...... + +.++|-. |.........+.++|+|+++.+
T Consensus        88 v~~~t~g~G~D~vid~~-g~~~~~~~a~~~~~~~G~iv~~  126 (174)
T d1jqba2          88 VMKLTNGKGVDRVIMAG-GGSETLSQAVKMVKPGGIISNI  126 (174)
T ss_dssp             HHHHTTTSCEEEEEECS-SCTTHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHhhccCcceEEEcc-CCHHHHHHHHHHHhcCCEEEEE
Confidence            1111111 1 2455433 4334445555778898988776

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.25  E-value=0.0012  Score=58.58  Aligned_cols=57  Identities=11%  Similarity=0.282  Sum_probs=41.7

Q ss_pred             CCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccccccccc
Q psy7829         372 HRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEI  433 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~  433 (511)
                      ....+|||||||+|..++.+++.. |+.+++..|.- +.++.+   -...+++++.+|..+.
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~~~---~~~~rv~~~~gD~f~~  135 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDRP-QVVENL---SGSNNLTYVGGDMFTS  135 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECH-HHHTTC---CCBTTEEEEECCTTTC
T ss_pred             cCceEEEEecCCccHHHHHHHHhC-CCCeEEEecCH-HHHHhC---cccCceEEEecCcccC
Confidence            345789999999999999999998 88999999974 333221   1245677777765443

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.19  E-value=0.0073  Score=50.64  Aligned_cols=47  Identities=17%  Similarity=0.215  Sum_probs=38.9

Q ss_pred             cCCCCCCEEEEEeccc-cHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHh
Q psy7829         369 LNLHRGAKVLEIGSGS-GYLATLMAHLVGPTGHVTGLEHMMDIAIESIA  416 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~  416 (511)
                      ..+++|++||-+|+|+ |.+++.+|+..|. .+|+++|.+++..+.+++
T Consensus        24 ~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga-~~Vi~~~~~~~~~~~a~~   71 (182)
T d1vj0a2          24 PESFAGKTVVIQGAGPLGLFGVVIARSLGA-ENVIVIAGSPNRLKLAEE   71 (182)
T ss_dssp             SSCCBTCEEEEECCSHHHHHHHHHHHHTTB-SEEEEEESCHHHHHHHHH
T ss_pred             hCCCCCCEEEEECCCccchhheeccccccc-cccccccccccccccccc
Confidence            4678999999999985 7788899998863 389999999988877644

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.19  E-value=0.0093  Score=49.10  Aligned_cols=105  Identities=15%  Similarity=0.058  Sum_probs=63.9

Q ss_pred             HHHHHhhcCCCCCCEEEEEeccc-cHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccccccchh
Q psy7829         362 HILDLCYLNLHRGAKVLEIGSGS-GYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIPHILDL  440 (511)
Q Consensus       362 ~~~~~~~~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l~~~~d~  440 (511)
                      +.+..  ..+++|++||=+|+|. |..++.+++..|  .+|+++|.+++..+.+++ ++...+  +.....+..+    .
T Consensus        18 ~al~~--~~~~~g~~VlV~GaG~vG~~~~~~ak~~G--~~Vi~~~~~~~~~~~a~~-~Ga~~~--i~~~~~~~~~----~   86 (166)
T d1llua2          18 KGLKQ--TNARPGQWVAISGIGGLGHVAVQYARAMG--LHVAAIDIDDAKLELARK-LGASLT--VNARQEDPVE----A   86 (166)
T ss_dssp             HHHHH--HTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH-TTCSEE--EETTTSCHHH----H
T ss_pred             HHHHH--hCCCCCCEEEEeeccccHHHHHHHHHHcC--CccceecchhhHHHhhhc-cCcccc--ccccchhHHH----H
Confidence            34444  6789999999999976 446677888876  799999999888776654 443221  1111111111    1


Q ss_pred             hhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         441 CYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       441 i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +.. ...+....-++++.+.......+.++|+|+++.+
T Consensus        87 ~~~-~~~g~~~~i~~~~~~~~~~~~~~~l~~~G~iv~~  123 (166)
T d1llua2          87 IQR-DIGGAHGVLVTAVSNSAFGQAIGMARRGGTIALV  123 (166)
T ss_dssp             HHH-HHSSEEEEEECCSCHHHHHHHHTTEEEEEEEEEC
T ss_pred             HHH-hhcCCcccccccccchHHHHHHHHhcCCcEEEEE
Confidence            111 1222222224556666666667788888988765

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.13  E-value=0.0076  Score=49.69  Aligned_cols=93  Identities=16%  Similarity=0.133  Sum_probs=61.8

Q ss_pred             cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-----
Q psy7829         130 HLVDGAKVLDLGSGS-GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-----  203 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-----  203 (511)
                      .++++++||=.|+|+ |..+..+++..  ..+|+++|.+++.++.+++.    |     .+.   +.....+.+.     
T Consensus        24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~~~r~~~~k~~----G-----a~~---~~~~~~~~~~~~~~~   89 (168)
T d1rjwa2          24 GAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKEL----G-----ADL---VVNPLKEDAAKFMKE   89 (168)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT----T-----CSE---EECTTTSCHHHHHHH
T ss_pred             CCCCCCEEEEeecccchhhhhHHHhcC--CCeEeccCCCHHHhhhhhhc----C-----cce---ecccccchhhhhccc
Confidence            388999999999997 55666777775  34799999999998888663    2     111   1111111100     


Q ss_pred             CCCCccEEEecCCCCchHHHHHhhcccCcEEEE
Q psy7829         204 PEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILA  236 (511)
Q Consensus       204 ~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~l~~  236 (511)
                      ....+|.++.+..-........+.|+|+|++++
T Consensus        90 ~~~~~~~~v~~~~~~~~~~~a~~~l~~~G~i~~  122 (168)
T d1rjwa2          90 KVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVL  122 (168)
T ss_dssp             HHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEE
T ss_pred             ccCCCceEEeecCCHHHHHHHHHHhccCCceEe
Confidence            012345555555556667899999999999987

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=96.13  E-value=0.0022  Score=56.45  Aligned_cols=82  Identities=17%  Similarity=0.120  Sum_probs=59.8

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHHh---------------------------------------CCCceEEEEeCCHHHHH
Q psy7829         132 VDGAKVLDLGSGSGYQTCVFAHMV---------------------------------------GPTGKVIGVEHIPELIE  172 (511)
Q Consensus       132 ~~~~~vLDiG~G~G~~~~~la~~~---------------------------------------~~~~~v~~iD~~~~~~~  172 (511)
                      ..+..++|-.||||.+.+..|-..                                       .....++|.|+++.+++
T Consensus        49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~  128 (249)
T d1o9ga_          49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ  128 (249)
T ss_dssp             CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence            445679999999999988766421                                       00134678899999999


Q ss_pred             HH---HHHHhccCCCcCCCCCeEEEEccCCCCCC-----CCCCccEEEecCCC
Q psy7829         173 AS---LRNISKGNKDLLDSGRVRIVEADAREGYL-----PEAPYDVIYYGGCV  217 (511)
Q Consensus       173 ~a---~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~fD~I~~~~~~  217 (511)
                      .|   ++|+...|    ....+++.+.|+++..+     ....+++|++|+++
T Consensus       129 ~A~~~r~n~~~Ag----l~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPY  177 (249)
T d1o9ga_         129 AARRLRERLTAEG----GALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPY  177 (249)
T ss_dssp             HHHHHHHHHHHTT----SSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCG
T ss_pred             HHHHHHHHHHHcC----CCceeeeeecchhccCcchhccCCCCCCEEEeCCCc
Confidence            88   46787776    45679999999874221     23567999999987

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.06  E-value=0.0043  Score=59.83  Aligned_cols=121  Identities=13%  Similarity=0.218  Sum_probs=76.8

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCC------------CcEEEEEcCCHHHHHHHHhhcc----
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGP------------TGHVTGLEHMMDIAIESIANIS----  419 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~------------~~~v~~id~~~~~~~~~~~~~~----  419 (511)
                      +...+..|+.+  +...++.+|+|-.||+|.+.+.+.+.+..            ...++|+|+++..+..+.-|+-    
T Consensus       147 P~~Iv~~mv~l--l~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~  224 (425)
T d2okca1         147 PRPLIQAMVDC--INPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI  224 (425)
T ss_dssp             CHHHHHHHHHH--HCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             chhhhHhhhee--ccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCC
Confidence            44556556665  67778999999999999999988776521            1259999999888877665543    


Q ss_pred             -ccccccccccccccc-cccchhhhhcccCCcEEE--------E--EcCCcc--HHHHHHHHHhCCCcEEEEh
Q psy7829         420 -TNHIDLIANETIEII-PHILDLCYLNLHRGAKVL--------E--IGSGSG--YLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       420 -~~~v~~i~~d~~~~l-~~~~d~i~~~l~~~~~vL--------D--~~~g~g--~~~~~l~~~l~~~g~v~~~  478 (511)
                       ..+..+..+|..... ...+|.+..|++-+...-        +  .+...+  .+.....+.++++|++..+
T Consensus       225 ~~~~~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI  297 (425)
T d2okca1         225 GTDRSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVV  297 (425)
T ss_dssp             CSSCCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEE
Confidence             233445555544332 235777777766543211        0  011111  2445566778999988777

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.05  E-value=0.0057  Score=50.67  Aligned_cols=94  Identities=21%  Similarity=0.252  Sum_probs=65.8

Q ss_pred             CCCCCEEEEEcC-C-ccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC------C
Q psy7829         131 LVDGAKVLDLGS-G-SGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG------Y  202 (511)
Q Consensus       131 ~~~~~~vLDiG~-G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~------~  202 (511)
                      ++++++||=+|| | .|..+..+++..+ ..+|+++|.++..++.+++.         +.+  .++..+-.+.      .
T Consensus        25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g-~~~V~~~~~~~~~~~~~~~~---------Ga~--~~i~~~~~~~~~~~~~~   92 (170)
T d1jvba2          25 LDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKRA---------GAD--YVINASMQDPLAEIRRI   92 (170)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHHH---------TCS--EEEETTTSCHHHHHHHH
T ss_pred             CCCCCEEEEEeccccceeeeeecccccc-cccccccccchhhHHHHHHc---------CCc--eeeccCCcCHHHHHHHH
Confidence            789999999997 4 4566777777764 35899999999998888764         111  2222221110      0


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhhcccCcEEEE
Q psy7829         203 LPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILA  236 (511)
Q Consensus       203 ~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~l~~  236 (511)
                      ...+.||+|+....-....+...+.++|||++++
T Consensus        93 ~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~  126 (170)
T d1jvba2          93 TESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVM  126 (170)
T ss_dssp             TTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEE
T ss_pred             hhcccchhhhcccccchHHHhhhhhcccCCEEEE
Confidence            1235699999877666666778899999999986

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.05  E-value=0.0052  Score=50.17  Aligned_cols=92  Identities=22%  Similarity=0.213  Sum_probs=66.6

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEE
Q psy7829         133 DGAKVLDLGSGS-GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVI  211 (511)
Q Consensus       133 ~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I  211 (511)
                      ++.+|+=||+|. |..++..|..+  .++|+.+|.+++.++..+.....         ++++...+-......-...|+|
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~l--GA~V~~~D~~~~~l~~l~~~~~~---------~~~~~~~~~~~l~~~~~~aDiv   99 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFGS---------RVELLYSNSAEIETAVAEADLL   99 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHGG---------GSEEEECCHHHHHHHHHTCSEE
T ss_pred             CCcEEEEECCChHHHHHHHHHhhC--CCEEEEEeCcHHHHHHHHHhhcc---------cceeehhhhhhHHHhhccCcEE
Confidence            467999999997 77888888887  46899999999999988877654         4555554432111111457999


Q ss_pred             EecCCC------CchHHHHHhhcccCcEEE
Q psy7829         212 YYGGCV------SEVPSRVLNQLKKGGRIL  235 (511)
Q Consensus       212 ~~~~~~------~~~~~~~~~~LkpgG~l~  235 (511)
                      +...-.      .-+.+++.+.+|||..++
T Consensus       100 I~aalipG~~aP~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1         100 IGAVLVPGRRAPILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             EECCCCTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred             EEeeecCCcccCeeecHHHHhhcCCCcEEE
Confidence            886544      234489999999998775

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.011  Score=49.08  Aligned_cols=93  Identities=27%  Similarity=0.370  Sum_probs=64.1

Q ss_pred             cCCCCCEEEEEcC--CccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc---cCCCC---
Q psy7829         130 HLVDGAKVLDLGS--GSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA---DAREG---  201 (511)
Q Consensus       130 ~~~~~~~vLDiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~---d~~~~---  201 (511)
                      .+++|++||-.|+  |.|..+..+++..+  .+|++++.+++..+.+++.         +.+.+  +.-   |..+.   
T Consensus        25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G--~~vi~~~~~~~~~~~~~~~---------Ga~~v--i~~~~~~~~~~i~~   91 (174)
T d1yb5a2          25 CVKAGESVLVHGASGGVGLAACQIARAYG--LKILGTAGTEEGQKIVLQN---------GAHEV--FNHREVNYIDKIKK   91 (174)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHT---------TCSEE--EETTSTTHHHHHHH
T ss_pred             CCCCCCEEEEEeccccccccccccccccC--ccccccccccccccccccc---------Ccccc--cccccccHHHHhhh
Confidence            4779999999996  45778888898874  5899999898887777652         22222  211   11110   


Q ss_pred             CCCCCCccEEEecCCCCchHHHHHhhcccCcEEEE
Q psy7829         202 YLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILA  236 (511)
Q Consensus       202 ~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~l~~  236 (511)
                      ......+|+|+.... ....+...+.|+|+|+++.
T Consensus        92 ~t~~~g~d~v~d~~g-~~~~~~~~~~l~~~G~iv~  125 (174)
T d1yb5a2          92 YVGEKGIDIIIEMLA-NVNLSKDLSLLSHGGRVIV  125 (174)
T ss_dssp             HHCTTCEEEEEESCH-HHHHHHHHHHEEEEEEEEE
T ss_pred             hhccCCceEEeeccc-HHHHHHHHhccCCCCEEEE
Confidence            112356999987655 3456788899999999987

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.96  E-value=0.0055  Score=50.71  Aligned_cols=51  Identities=20%  Similarity=0.199  Sum_probs=40.7

Q ss_pred             HHHHHhhcCCCCCCEEEEEecc-ccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHh
Q psy7829         362 HILDLCYLNLHRGAKVLEIGSG-SGYLATLMAHLVGPTGHVTGLEHMMDIAIESIA  416 (511)
Q Consensus       362 ~~~~~~~~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~  416 (511)
                      +.+..  ..+++|++||-+|+| .|..++.+|+..|  .+|+++|.+++..+.+++
T Consensus        18 ~al~~--~~~~~g~~vlI~GaG~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~a~~   69 (168)
T d1piwa2          18 SPLVR--NGCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAMK   69 (168)
T ss_dssp             HHHHH--TTCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHH
T ss_pred             HHHHH--hCcCCCCEEEEECCCCcchhHHHHhhhcc--ccccccccchhHHHHhhc
Confidence            34444  688999999999998 6677888888887  799999999877766544

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.87  E-value=0.014  Score=52.77  Aligned_cols=108  Identities=15%  Similarity=0.095  Sum_probs=71.9

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcc-------cccccccccccccccc----cc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANIS-------TNHIDLIANETIEIIP----HI  437 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~-------~~~v~~i~~d~~~~l~----~~  437 (511)
                      +..+..++||=||-|.|..+..+.+.. +-.+|+.+|++++.++.+++-+.       .++++++.+|+.+.+.    ..
T Consensus        76 ~~~~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~  154 (290)
T d1xj5a_          76 CSIPNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGS  154 (290)
T ss_dssp             TTSSCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTC
T ss_pred             hhCCCCcceEEecCCchHHHHHHHhcc-cceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccC
Confidence            344567899999999999999887654 44689999999999888776542       4667888888766553    23


Q ss_pred             chhhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         438 LDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       438 ~d~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +|.++.++..+.... ...-+-.+...+.+.|+|+|-++.-
T Consensus       155 yDvIi~D~~dp~~~~-~~L~t~eF~~~~~~~L~~~Gi~v~q  194 (290)
T d1xj5a_         155 YDAVIVDSSDPIGPA-KELFEKPFFQSVARALRPGGVVCTQ  194 (290)
T ss_dssp             EEEEEECCCCTTSGG-GGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccEEEEcCCCCCCcc-hhhCCHHHHHHHHHhcCCCcEEEEe
Confidence            555544433221000 0001233456677889999888763

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.77  E-value=0.027  Score=46.64  Aligned_cols=97  Identities=15%  Similarity=0.172  Sum_probs=64.2

Q ss_pred             cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCC-eEEEEccCC--C--CCC
Q psy7829         130 HLVDGAKVLDLGSGS-GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGR-VRIVEADAR--E--GYL  203 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~-v~~~~~d~~--~--~~~  203 (511)
                      .+++|++||=+|||. |..+..+++..+ ..+|+++|.+++.++.+++.    |     .+. +.+...|..  +  ...
T Consensus        24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G-~~~Vi~~d~~~~kl~~a~~l----G-----a~~~i~~~~~d~~~~~~~~~~   93 (174)
T d1p0fa2          24 KVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIEL----G-----ATECLNPKDYDKPIYEVICEK   93 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHHT----T-----CSEEECGGGCSSCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcC-CceeeccCChHHHHHHHHHc----C-----CcEEEcCCCchhHHHHHHHHh
Confidence            378999999999997 456677788775 36899999999999998764    1     111 111111211  0  001


Q ss_pred             CCCCccEEEecCCCCchHHHHHhhccc-CcEEEE
Q psy7829         204 PEAPYDVIYYGGCVSEVPSRVLNQLKK-GGRILA  236 (511)
Q Consensus       204 ~~~~fD~I~~~~~~~~~~~~~~~~Lkp-gG~l~~  236 (511)
                      ..+.+|+|+...............+++ +|.+++
T Consensus        94 ~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~  127 (174)
T d1p0fa2          94 TNGGVDYAVECAGRIETMMNALQSTYCGSGVTVV  127 (174)
T ss_dssp             TTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEE
T ss_pred             cCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEE
Confidence            125699999877766666667766655 588876

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.058  Score=44.24  Aligned_cols=104  Identities=17%  Similarity=0.123  Sum_probs=62.4

Q ss_pred             cCCCCCCEEEEEeccccH-HHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccccccchhhhhccc-
Q psy7829         369 LNLHRGAKVLEIGSGSGY-LATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIPHILDLCYLNLH-  446 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~-~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l~~~~d~i~~~l~-  446 (511)
                      ..+++|++||=+|+|+.. .+..+++..|. .+|+++|.+++..+.+++ ++...+.....+...   .....+..... 
T Consensus        22 ~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~-~~Vi~~d~~~~rl~~a~~-~Ga~~~~~~~~~~~~---~~~~~~~~~~g~   96 (171)
T d1pl8a2          22 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAKE-IGADLVLQISKESPQ---EIARKVEGQLGC   96 (171)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHH-TTCSEEEECSSCCHH---HHHHHHHHHHTS
T ss_pred             hCCCCCCEEEEECCCccHHHHHHHHHHcCC-ceEEeccCCHHHHHHHHH-hCCcccccccccccc---cccccccccCCC
Confidence            688999999999998755 56777777763 489999999998887654 444332222111111   11111111111 


Q ss_pred             CCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         447 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       447 ~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .-..++| +.|.........+.++++|+++.+
T Consensus        97 g~Dvvid-~~G~~~~~~~a~~~~~~gG~iv~~  127 (171)
T d1pl8a2          97 KPEVTIE-CTGAEASIQAGIYATRSGGTLVLV  127 (171)
T ss_dssp             CCSEEEE-CSCCHHHHHHHHHHSCTTCEEEEC
T ss_pred             CceEEEe-ccCCchhHHHHHHHhcCCCEEEEE
Confidence            1234443 345555556666788898988776

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=95.41  E-value=0.016  Score=51.14  Aligned_cols=56  Identities=20%  Similarity=0.158  Sum_probs=44.3

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhc
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISK  180 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~  180 (511)
                      +..+++...   ..+|+.|||.-||||..+.+..+.   +-+.+|+|++++.++.|++++++
T Consensus       201 L~~~lI~~~---s~~gd~VlDpF~GSGTT~~aa~~~---~R~~ig~El~~~y~~~a~~Rl~~  256 (256)
T d1g60a_         201 LIERIIRAS---SNPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLNQ  256 (256)
T ss_dssp             HHHHHHHHH---CCTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHh---CCCCCEEEECCCCchHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHcC
Confidence            444455444   578999999999999888765554   34799999999999999999763

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.38  E-value=0.039  Score=45.60  Aligned_cols=103  Identities=12%  Similarity=0.112  Sum_probs=62.1

Q ss_pred             cCCCCCCEEEEEeccc-cHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccc-ccccccccccccccchhhhhccc
Q psy7829         369 LNLHRGAKVLEIGSGS-GYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHI-DLIANETIEIIPHILDLCYLNLH  446 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v-~~i~~d~~~~l~~~~d~i~~~l~  446 (511)
                      ..+++|++||=+|||. |..++.+++..|. ..|+++|.+++..+.+++ ++...+ +....+.  ........  ..-.
T Consensus        24 a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga-~~Vi~~d~~~~r~~~a~~-~Ga~~~i~~~~~~~--~~~~~~~~--~~~~   97 (174)
T d1e3ia2          24 AKVTPGSTCAVFGLGCVGLSAIIGCKIAGA-SRIIAIDINGEKFPKAKA-LGATDCLNPRELDK--PVQDVITE--LTAG   97 (174)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHH-TTCSEEECGGGCSS--CHHHHHHH--HHTS
T ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHhCC-ceeeeeccchHHHHHHHH-hCCCcccCCccchh--hhhhhHhh--hhcC
Confidence            6789999999999998 7788999998864 589999999887666554 443222 2111110  01100000  0111


Q ss_pred             CCcEEEEEcCCccHHHHHHHHHhCCC-cEEEEh
Q psy7829         447 RGAKVLEIGSGSGYLATLMAHLVGPT-GHVTGL  478 (511)
Q Consensus       447 ~~~~vLD~~~g~g~~~~~l~~~l~~~-g~v~~~  478 (511)
                      .-..++ -+.|.........+.++++ |+++.+
T Consensus        98 G~d~vi-e~~G~~~~~~~a~~~~~~g~G~~v~v  129 (174)
T d1e3ia2          98 GVDYSL-DCAGTAQTLKAAVDCTVLGWGSCTVV  129 (174)
T ss_dssp             CBSEEE-ESSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCcEEE-EecccchHHHHHHHHhhcCCeEEEec
Confidence            123444 3446655556666677775 888766

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.22  E-value=0.082  Score=43.42  Aligned_cols=98  Identities=15%  Similarity=0.189  Sum_probs=68.3

Q ss_pred             cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc-CCCCC-----
Q psy7829         130 HLVDGAKVLDLGSGS-GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD-AREGY-----  202 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d-~~~~~-----  202 (511)
                      .+++|++||=.|||. |..+..+++..+ ...|+++|.+++..+.+++.-         .+.  ++..+ ..+..     
T Consensus        25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G-~~~vi~~~~~~~k~~~ak~lG---------a~~--~i~~~~~~~~~~~~~~   92 (176)
T d2fzwa2          25 KLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAKEFG---------ATE--CINPQDFSKPIQEVLI   92 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHHHT---------CSE--EECGGGCSSCHHHHHH
T ss_pred             CCCCCCEEEEecchhHHHHHHHHHHHHh-cCceEEEcccHHHHHHHHHhC---------CcE--EEeCCchhhHHHHHHH
Confidence            378999999999874 456777888774 367999999999988887642         211  22111 11100     


Q ss_pred             -CCCCCccEEEecCCCCchHHHHHhhcccCcEEEEEEc
Q psy7829         203 -LPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       203 -~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~l~~~~~  239 (511)
                       ...+.+|+|+-...-....+.+...+++||.+++...
T Consensus        93 ~~~~~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~~  130 (176)
T d2fzwa2          93 EMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVG  130 (176)
T ss_dssp             HHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECS
T ss_pred             HHcCCCCcEeeecCCCHHHHHHHHHhhcCCceeEEEEe
Confidence             0125699999887777778889999999988876444

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.074  Score=43.72  Aligned_cols=99  Identities=15%  Similarity=0.149  Sum_probs=59.3

Q ss_pred             cCCCCCCEEEEEec--cccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccccccchhhhhccc
Q psy7829         369 LNLHRGAKVLEIGS--GSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIPHILDLCYLNLH  446 (511)
Q Consensus       369 ~~~~~~~~vLdiG~--G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l~~~~d~i~~~l~  446 (511)
                      ..+++|++||-.|+  |.|..++.+|+..|  .+|++++.+++..+.+++ ++...+  +.....+    ..+.+.....
T Consensus        24 ~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G--~~vi~~~~~~~~~~~~~~-~Ga~~v--i~~~~~~----~~~~i~~~t~   94 (174)
T d1yb5a2          24 ACVKAGESVLVHGASGGVGLAACQIARAYG--LKILGTAGTEEGQKIVLQ-NGAHEV--FNHREVN----YIDKIKKYVG   94 (174)
T ss_dssp             SCCCTTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH-TTCSEE--EETTSTT----HHHHHHHHHC
T ss_pred             hCCCCCCEEEEEeccccccccccccccccC--cccccccccccccccccc-cCcccc--ccccccc----HHHHhhhhhc
Confidence            57889999999996  56778888998887  799999988876665543 454322  1111111    1111111112


Q ss_pred             CC--cEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         447 RG--AKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       447 ~~--~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..  ..++|  |..+.......+.++|+|+++.+
T Consensus        95 ~~g~d~v~d--~~g~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          95 EKGIDIIIE--MLANVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             TTCEEEEEE--SCHHHHHHHHHHHEEEEEEEEEC
T ss_pred             cCCceEEee--cccHHHHHHHHhccCCCCEEEEE
Confidence            22  22333  33345556666778888888765

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.08  E-value=0.057  Score=44.52  Aligned_cols=99  Identities=10%  Similarity=0.080  Sum_probs=66.2

Q ss_pred             cCCCCCEEEEEcCCccH-HHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC------
Q psy7829         130 HLVDGAKVLDLGSGSGY-QTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY------  202 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~------  202 (511)
                      .+++|++||=+|+|.+. .+..+++.. -..+|+++|.+++..+.+++.-..         . .+...+..+..      
T Consensus        25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~-g~~~Vi~~~~~~~k~~~a~~~Ga~---------~-~i~~~~~~~~~~~~~~~   93 (176)
T d2jhfa2          25 KVTQGSTCAVFGLGGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAKEVGAT---------E-CVNPQDYKKPIQEVLTE   93 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTCS---------E-EECGGGCSSCHHHHHHH
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHc-CCceEEeecCcHHHHHHHHHhCCe---------e-EEecCCchhHHHHHHHH
Confidence            37899999999997644 556666665 346899999999999888765221         1 11111211110      


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhhcccCcEEEEEEc
Q psy7829         203 LPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       203 ~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~l~~~~~  239 (511)
                      ...+.+|+|+-........+.....++++|..++...
T Consensus        94 ~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~  130 (176)
T d2jhfa2          94 MSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVG  130 (176)
T ss_dssp             HTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECS
T ss_pred             HhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEec
Confidence            1225699999988887777888889988755544343

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=95.01  E-value=0.015  Score=53.33  Aligned_cols=58  Identities=22%  Similarity=0.104  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhcc
Q psy7829         118 NQIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKG  181 (511)
Q Consensus       118 ~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~  181 (511)
                      .+..+++...   ..+|+.|||.-||||..+.+..+.   +-+.+|+|++++.++.|++++.+.
T Consensus       238 ~L~~rlI~~~---s~~gdiVlDpF~GSGTT~~AA~~l---gR~~Ig~El~~~y~~~a~~Rl~~~  295 (320)
T d1booa_         238 KLPEFFIRML---TEPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLDN  295 (320)
T ss_dssp             HHHHHHHHHH---CCTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSCS
T ss_pred             HHHHHhhhhc---ccCCCEEEecCCCCcHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHHHhc
Confidence            4556666555   578999999999999988776554   347999999999999999987653

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=94.83  E-value=0.031  Score=48.39  Aligned_cols=38  Identities=24%  Similarity=0.287  Sum_probs=30.9

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCC
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHM  407 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~  407 (511)
                      ..++++.+|+|+|||+|..+..++... +...|.|+++-
T Consensus        62 ~~~~~~~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG   99 (257)
T d2p41a1          62 NLVTPEGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKG   99 (257)
T ss_dssp             TSSCCCEEEEEETCTTSHHHHHHHTST-TEEEEEEECCC
T ss_pred             cCccCCCeEEEecCCCChHHHHHHhhc-CCCceeEEEec
Confidence            567888899999999999999998764 33577888763

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.79  E-value=0.0093  Score=49.45  Aligned_cols=93  Identities=22%  Similarity=0.243  Sum_probs=61.7

Q ss_pred             cCCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCC
Q psy7829         130 HLVDGAKVLDLGS-GS-GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAP  207 (511)
Q Consensus       130 ~~~~~~~vLDiG~-G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  207 (511)
                      .+++|++||=.|+ |. |..+..+++..+  .+|++++.+++..+.+++.         +.+.+ +-..|..........
T Consensus        24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~G--~~vi~~~~~~~~~~~~~~l---------Ga~~~-i~~~~~~~~~~~~~g   91 (171)
T d1iz0a2          24 QARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEKLALPLAL---------GAEEA-ATYAEVPERAKAWGG   91 (171)
T ss_dssp             TCCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGGSHHHHHT---------TCSEE-EEGGGHHHHHHHTTS
T ss_pred             CCCCCCEEEEEeccccchhhhhhhhcccc--ccccccccccccccccccc---------cccee-eehhhhhhhhhcccc
Confidence            4789999999884 43 677888898874  5899999998887777652         22222 111111111112356


Q ss_pred             ccEEEecCCCCchHHHHHhhcccCcEEEE
Q psy7829         208 YDVIYYGGCVSEVPSRVLNQLKKGGRILA  236 (511)
Q Consensus       208 fD~I~~~~~~~~~~~~~~~~LkpgG~l~~  236 (511)
                      +|+|+-...  .......+.|+|+|+++.
T Consensus        92 ~D~v~d~~G--~~~~~~~~~l~~~G~~v~  118 (171)
T d1iz0a2          92 LDLVLEVRG--KEVEESLGLLAHGGRLVY  118 (171)
T ss_dssp             EEEEEECSC--TTHHHHHTTEEEEEEEEE
T ss_pred             ccccccccc--hhHHHHHHHHhcCCcEEE
Confidence            999986433  345678899999999986

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.67  E-value=0.11  Score=42.46  Aligned_cols=44  Identities=25%  Similarity=0.343  Sum_probs=35.0

Q ss_pred             cCCCCCCEEEEEeccc-cHHHHHHHHHhCCCcEEEEEcCCHHHHHHH
Q psy7829         369 LNLHRGAKVLEIGSGS-GYLATLMAHLVGPTGHVTGLEHMMDIAIES  414 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~id~~~~~~~~~  414 (511)
                      ..+++|++||=+|+|. |.+++.+|+..|  .+++++|.+.+..+.+
T Consensus        26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~G--a~~i~~~~~~~~~~~a   70 (168)
T d1uufa2          26 WQAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREAA   70 (168)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHH
T ss_pred             hCCCCCCEEEEeccchHHHHHHHHhhccc--ccchhhccchhHHHHH
Confidence            6889999999999875 557788888876  6888999887655443

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=94.39  E-value=0.093  Score=47.70  Aligned_cols=86  Identities=19%  Similarity=0.038  Sum_probs=62.2

Q ss_pred             CEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCccEEEe
Q psy7829         135 AKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYDVIYY  213 (511)
Q Consensus       135 ~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I~~  213 (511)
                      .+|+|+-||.|.++..+.+.. - -.+.++|+++.+.+..+.|..           -.++.+|+.+... .....|+++.
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG-~-~~~~a~e~d~~a~~~~~~N~~-----------~~~~~~Di~~~~~~~~~~~dll~~   67 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAG-F-RIICANEYDKSIWKTYESNHS-----------AKLIKGDISKISSDEFPKCDGIIG   67 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHT-C-EEEEEEECCHHHHHHHHHHCC-----------SEEEESCTTTSCGGGSCCCSEEEE
T ss_pred             CeEEEeCcCcCHHHHHHHHCC-C-EEEEEEeCCHHHHHHHHHHCC-----------CCCccCChhhCCHhHcccccEEee
Confidence            479999999999998887763 2 346799999999888877743           2456788875322 1246899999


Q ss_pred             cCCCCchH-------------------HHHHhhcccCcE
Q psy7829         214 GGCVSEVP-------------------SRVLNQLKKGGR  233 (511)
Q Consensus       214 ~~~~~~~~-------------------~~~~~~LkpgG~  233 (511)
                      +.+|+.+.                   -++.+.++|.-.
T Consensus        68 g~PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk~~  106 (324)
T d1dcta_          68 GPPCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFF  106 (324)
T ss_dssp             CCCCTTTSSSSCCCCSSSHHHHHHHHHHHHHHHHCCSEE
T ss_pred             cccccccccccccccccccccchHHHHHHHHHhhCCcee
Confidence            99985432                   346677888633

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.39  E-value=0.069  Score=44.09  Aligned_cols=99  Identities=11%  Similarity=0.115  Sum_probs=63.2

Q ss_pred             cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCC-C---CCCC
Q psy7829         130 HLVDGAKVLDLGSGS-GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAR-E---GYLP  204 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~-~---~~~~  204 (511)
                      .+++|+.|+=+|||. |..+..+++..+ ..+|+++|.+++.++.|++.-...        -+.....|.. .   ....
T Consensus        26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G-~~~Vi~vd~~~~kl~~Ak~~GA~~--------~in~~~~~~~~~~~~~~~~   96 (176)
T d1d1ta2          26 KVKPGSTCVVFGLGGVGLSVIMGCKSAG-ASRIIGIDLNKDKFEKAMAVGATE--------CISPKDSTKPISEVLSEMT   96 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHHTCSE--------EECGGGCSSCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcC-CceEEEecCcHHHHHHHHhcCCcE--------EECccccchHHHHHHHHhc
Confidence            378999999999997 446667777764 368999999999999998762220        0111111111 0   0011


Q ss_pred             CCCccEEEecCCCCchHHHHHhhc-ccCcEEEEE
Q psy7829         205 EAPYDVIYYGGCVSEVPSRVLNQL-KKGGRILAP  237 (511)
Q Consensus       205 ~~~fD~I~~~~~~~~~~~~~~~~L-kpgG~l~~~  237 (511)
                      ...+|+++....-..........+ +++|++++.
T Consensus        97 g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~v  130 (176)
T d1d1ta2          97 GNNVGYTFEVIGHLETMIDALASCHMNYGTSVVV  130 (176)
T ss_dssp             TSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEEC
T ss_pred             cccceEEEEeCCchHHHHHHHHHhhcCCeEEEEE
Confidence            256998888766655555555555 555888773

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=94.36  E-value=0.072  Score=43.97  Aligned_cols=94  Identities=18%  Similarity=0.284  Sum_probs=65.1

Q ss_pred             cCCCCCEEEEEcCCc--cHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEc---cCCCC---
Q psy7829         130 HLVDGAKVLDLGSGS--GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEA---DAREG---  201 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~--G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~---d~~~~---  201 (511)
                      .++++++||=.|+|+  |..+..+|+..+  ++|++++.+++..+.+++.         +.+  +++..   |+.+.   
T Consensus        25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~G--a~Vi~~~~s~~k~~~~~~l---------Ga~--~vi~~~~~d~~~~v~~   91 (179)
T d1qora2          25 EIKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGTAQKAQSALKA---------GAW--QVINYREEDLVERLKE   91 (179)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHHH---------TCS--EEEETTTSCHHHHHHH
T ss_pred             CCCCCCEEEEEccccccchHHHHHHHHhC--CeEeecccchHHHHHHHhc---------CCe--EEEECCCCCHHHHHHH
Confidence            368899999986664  678888999874  5899999999999888764         222  12211   11110   


Q ss_pred             CCCCCCccEEEecCCCCchHHHHHhhcccCcEEEEE
Q psy7829         202 YLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAP  237 (511)
Q Consensus       202 ~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~l~~~  237 (511)
                      ......+|+|+.... ........+.++|+|++++.
T Consensus        92 ~t~g~g~d~v~d~~g-~~~~~~~~~~l~~~G~~v~~  126 (179)
T d1qora2          92 ITGGKKVRVVYDSVG-RDTWERSLDCLQRRGLMVSF  126 (179)
T ss_dssp             HTTTCCEEEEEECSC-GGGHHHHHHTEEEEEEEEEC
T ss_pred             HhCCCCeEEEEeCcc-HHHHHHHHHHHhcCCeeeec
Confidence            112356898877654 44567899999999998763

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=94.28  E-value=0.013  Score=51.37  Aligned_cols=69  Identities=20%  Similarity=0.211  Sum_probs=50.0

Q ss_pred             CCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHH---HHhhcc---------ccccccccccccccccc---cc
Q psy7829         374 GAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIE---SIANIS---------TNHIDLIANETIEIIPH---IL  438 (511)
Q Consensus       374 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~---~~~~~~---------~~~v~~i~~d~~~~l~~---~~  438 (511)
                      ..+|||.=||.|..+..+|...   ++|+++|.++..+..   +.++..         ..+++++++|+.+.+..   .+
T Consensus        89 ~~~VlD~TaGlG~Da~vlA~~G---~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~  165 (250)
T d2oyra1          89 LPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRP  165 (250)
T ss_dssp             CCCEEETTCTTCHHHHHHHHHT---CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCC
T ss_pred             CCEEEECCCcccHHHHHHHhCC---CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCC
Confidence            3589999999999999999875   799999999755443   222221         34688999997776543   35


Q ss_pred             hhhhhcc
Q psy7829         439 DLCYLNL  445 (511)
Q Consensus       439 d~i~~~l  445 (511)
                      |.++.+.
T Consensus       166 DvIYlDP  172 (250)
T d2oyra1         166 QVVYLDP  172 (250)
T ss_dssp             SEEEECC
T ss_pred             CEEEECC
Confidence            6666554

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=94.25  E-value=0.059  Score=53.00  Aligned_cols=121  Identities=15%  Similarity=0.109  Sum_probs=72.7

Q ss_pred             CHHHHHHHHHHhhcCCCCCCEEEEEeccccHHHHHHHHHhCC-----------------CcEEEEEcCCHHHHHHHHhhc
Q psy7829         356 SERSIAHILDLCYLNLHRGAKVLEIGSGSGYLATLMAHLVGP-----------------TGHVTGLEHMMDIAIESIANI  418 (511)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~-----------------~~~v~~id~~~~~~~~~~~~~  418 (511)
                      +...+..|+.+  +...++.+|+|-.||+|.+.+.+.+.+..                 ...++|+|+++...+.+.-|+
T Consensus       149 P~~Iv~~mv~l--l~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl  226 (524)
T d2ar0a1         149 PRPLIKTIIHL--LKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNC  226 (524)
T ss_dssp             CHHHHHHHHHH--HCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHH
T ss_pred             ccchhHhhhhc--ccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence            44555555555  67788999999999999999887765421                 126899999998888777665


Q ss_pred             cccccc--ccccccccc---------ccccchhhhhcccCCcEEE-------EEcCCccH--HHHHHHHHhCCCcEEEEh
Q psy7829         419 STNHID--LIANETIEI---------IPHILDLCYLNLHRGAKVL-------EIGSGSGY--LATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       419 ~~~~v~--~i~~d~~~~---------l~~~~d~i~~~l~~~~~vL-------D~~~g~g~--~~~~l~~~l~~~g~v~~~  478 (511)
                      -....+  +..++....         ....+|.+..|++-+...-       ......+.  +.....+.|+++|++..+
T Consensus       227 ~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiI  306 (524)
T d2ar0a1         227 LLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVV  306 (524)
T ss_dssp             HTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEE
Confidence            433221  112211110         1124677777765443110       00111222  455666788999998777

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.24  E-value=0.041  Score=49.06  Aligned_cols=57  Identities=25%  Similarity=0.250  Sum_probs=46.0

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhcc
Q psy7829         119 QIADAAENLKLHLVDGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKG  181 (511)
Q Consensus       119 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~  181 (511)
                      +..+++...   ..+|+.|||.-||||..+.+..+. +  -+.+|+|+++..++.|++++...
T Consensus       196 L~~~~I~~~---s~~gdiVLDpF~GSGTT~~Aa~~l-g--R~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         196 VIERLVRAL---SHPGSTVLDFFAGSGVTARVAIQE-G--RNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             HHHHHHHHH---SCTTCEEEETTCTTCHHHHHHHHH-T--CEEEEEESSTHHHHHHHHHHHHC
T ss_pred             HHHHHHHhh---cCCCCEEEecCCCCcHHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHHHHh
Confidence            455555544   579999999999999988776665 3  37999999999999999998863

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.24  E-value=0.11  Score=42.66  Aligned_cols=99  Identities=15%  Similarity=0.117  Sum_probs=64.2

Q ss_pred             cCCCCCEEEEEcCCccH-HHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC------
Q psy7829         130 HLVDGAKVLDLGSGSGY-QTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY------  202 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~------  202 (511)
                      .++++++||=+|+|.+. .+..+++.. -..+|+++|.+++.++.+++.         +.+  +++..+-....      
T Consensus        25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~-g~~~Vi~~~~~~~rl~~a~~~---------GAd--~~in~~~~~~~~~~~~~   92 (175)
T d1cdoa2          25 KVEPGSTCAVFGLGAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAKVF---------GAT--DFVNPNDHSEPISQVLS   92 (175)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHT---------TCC--EEECGGGCSSCHHHHHH
T ss_pred             CCCCCCEEEEEecCCccchHHHHHHHH-hhchheeecchHHHHHHHHHc---------CCc--EEEcCCCcchhHHHHHH
Confidence            47899999999999855 445555555 356899999999998888763         221  22221111101      


Q ss_pred             -CCCCCccEEEecCCCCchHHHHHhhcccCcEEEEEEcc
Q psy7829         203 -LPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       203 -~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~l~~~~~~  240 (511)
                       ...+.+|+|+-...-..........+++||..++..+.
T Consensus        93 ~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~  131 (175)
T d1cdoa2          93 KMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGW  131 (175)
T ss_dssp             HHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSC
T ss_pred             hhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEe
Confidence             01246899998877766677777877777555554443

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=94.18  E-value=0.087  Score=43.41  Aligned_cols=99  Identities=11%  Similarity=0.060  Sum_probs=61.5

Q ss_pred             cCCCCCCEEEEEecc--ccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccccccchhhhhccc
Q psy7829         369 LNLHRGAKVLEIGSG--SGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIPHILDLCYLNLH  446 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G--~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l~~~~d~i~~~l~  446 (511)
                      ..+++|++||=.|+|  .|..++.+|+..|  .+|++++.+++..+..++ ++...  ++.....+..+    .+.....
T Consensus        24 ~~l~~g~~Vlv~ga~g~vG~~~iqlak~~G--a~Vi~~~~s~~k~~~~~~-lGa~~--vi~~~~~d~~~----~v~~~t~   94 (179)
T d1qora2          24 YEIKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGTAQKAQSALK-AGAWQ--VINYREEDLVE----RLKEITG   94 (179)
T ss_dssp             SCCCTTCEEEESSTTBHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHH-HTCSE--EEETTTSCHHH----HHHHHTT
T ss_pred             hCCCCCCEEEEEccccccchHHHHHHHHhC--CeEeecccchHHHHHHHh-cCCeE--EEECCCCCHHH----HHHHHhC
Confidence            578899999998666  4667889999887  899999999888766543 45332  22111111111    1111112


Q ss_pred             CC--cEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         447 RG--AKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       447 ~~--~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ..  ..++|  |..|.........++++|+++.+
T Consensus        95 g~g~d~v~d--~~g~~~~~~~~~~l~~~G~~v~~  126 (179)
T d1qora2          95 GKKVRVVYD--SVGRDTWERSLDCLQRRGLMVSF  126 (179)
T ss_dssp             TCCEEEEEE--CSCGGGHHHHHHTEEEEEEEEEC
T ss_pred             CCCeEEEEe--CccHHHHHHHHHHHhcCCeeeec
Confidence            22  23444  44455667777888888988765

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.11  E-value=0.03  Score=47.22  Aligned_cols=47  Identities=15%  Similarity=0.152  Sum_probs=33.6

Q ss_pred             CCCCEEEEEeccccHHH----HHHHHHhC---CCcEEEEEcCCHHHHHHHHhhc
Q psy7829         372 HRGAKVLEIGSGSGYLA----TLMAHLVG---PTGHVTGLEHMMDIAIESIANI  418 (511)
Q Consensus       372 ~~~~~vLdiG~G~G~~~----~~la~~~~---~~~~v~~id~~~~~~~~~~~~~  418 (511)
                      .+.-+||++|||||.=+    +.+.....   ..-+|+|+|++...+++|++..
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~   76 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGI   76 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTE
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCc
Confidence            34559999999999844    33333321   2347999999999999887653

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.07  E-value=0.031  Score=46.52  Aligned_cols=94  Identities=21%  Similarity=0.202  Sum_probs=62.6

Q ss_pred             cCCCCCEEEEEcC--CccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc--CCCC---C
Q psy7829         130 HLVDGAKVLDLGS--GSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD--AREG---Y  202 (511)
Q Consensus       130 ~~~~~~~vLDiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d--~~~~---~  202 (511)
                      .+++|++||=.|.  |.|..+..+++..+  .++++++.+++..+.+++.    |     .+.+ +...+  ..+.   .
T Consensus        22 ~~~~g~~VlI~ga~g~vG~~~iqla~~~g--~~vi~~~~~~~~~~~l~~~----G-----a~~v-i~~~~~~~~~~v~~~   89 (183)
T d1pqwa_          22 RLSPGERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDAKREMLSRL----G-----VEYV-GDSRSVDFADEILEL   89 (183)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHTT----C-----CSEE-EETTCSTHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcccccchhhcccc--ccceeeecccccccccccc----c-----cccc-ccCCccCHHHHHHHH
Confidence            3678999998773  45778888998874  5788888888777766542    2     2222 11111  1110   0


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhhcccCcEEEE
Q psy7829         203 LPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILA  236 (511)
Q Consensus       203 ~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~l~~  236 (511)
                      .....+|+|+....- ...+.+.+.|+++|+++.
T Consensus        90 t~~~g~d~v~d~~g~-~~~~~~~~~l~~~G~~v~  122 (183)
T d1pqwa_          90 TDGYGVDVVLNSLAG-EAIQRGVQILAPGGRFIE  122 (183)
T ss_dssp             TTTCCEEEEEECCCT-HHHHHHHHTEEEEEEEEE
T ss_pred             hCCCCEEEEEecccc-hHHHHHHHHhcCCCEEEE
Confidence            123569999986653 566788999999999987

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.02  E-value=0.18  Score=40.89  Aligned_cols=104  Identities=11%  Similarity=0.008  Sum_probs=63.3

Q ss_pred             HHHHHhhcCCCCCCEEEEEeccccH-HHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccc-cccccccccccch
Q psy7829         362 HILDLCYLNLHRGAKVLEIGSGSGY-LATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLI-ANETIEIIPHILD  439 (511)
Q Consensus       362 ~~~~~~~~~~~~~~~vLdiG~G~G~-~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i-~~d~~~~l~~~~d  439 (511)
                      +.+..  ..+++|++||=.|+|+-. .++.+++..|  .+|++++.+++..+.+++ ++...+-.. ..+..+.+     
T Consensus        18 ~al~~--~~~~~g~~vlv~G~G~iG~~a~~~a~~~g--~~v~~~~~~~~r~~~~k~-~Ga~~~~~~~~~~~~~~~-----   87 (168)
T d1rjwa2          18 KALKV--TGAKPGEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIGDEKLELAKE-LGADLVVNPLKEDAAKFM-----   87 (168)
T ss_dssp             HHHHH--HTCCTTCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHH-TTCSEEECTTTSCHHHHH-----
T ss_pred             HHHHH--hCCCCCCEEEEeecccchhhhhHHHhcCC--CeEeccCCCHHHhhhhhh-cCcceecccccchhhhhc-----
Confidence            34444  678999999999998765 4566677665  789999999988777654 543322111 11111111     


Q ss_pred             hhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       440 ~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                        .........++ +.++.+.......+.++|+|+++.+
T Consensus        88 --~~~~~~~~~~v-~~~~~~~~~~~a~~~l~~~G~i~~~  123 (168)
T d1rjwa2          88 --KEKVGGVHAAV-VTAVSKPAFQSAYNSIRRGGACVLV  123 (168)
T ss_dssp             --HHHHSSEEEEE-ESSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred             --ccccCCCceEE-eecCCHHHHHHHHHHhccCCceEec
Confidence              11112222333 3456666667777888888888765

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.01  E-value=0.046  Score=45.00  Aligned_cols=99  Identities=18%  Similarity=0.184  Sum_probs=60.4

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCC---eEEEEccCCC---CCCC-
Q psy7829         133 DGAKVLDLGSGS-GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGR---VRIVEADARE---GYLP-  204 (511)
Q Consensus       133 ~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~---v~~~~~d~~~---~~~~-  204 (511)
                      ++.+||=||+|. |..++..|..+  .++|+.+|+++..++..++...+.-.  +....   .+-..+.+.+   .+.. 
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~l--GA~V~v~D~~~~~~~~l~~l~~~~i~--~~~~~~~~~~~~~gyA~~~s~~~~~~  103 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAATKEQVESLGGKFIT--VDDEAMKTAETAGGYAKEMGEEFRKK  103 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHHHTTCEECC--C-----------------------CC
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhhcceEE--EeccccccccccccchhhcCHHHHHH
Confidence            567999999997 67788888887  45899999999998888775443100  00000   0000000000   0000 


Q ss_pred             --------CCCccEEEecCCCC------chHHHHHhhcccCcEEE
Q psy7829         205 --------EAPYDVIYYGGCVS------EVPSRVLNQLKKGGRIL  235 (511)
Q Consensus       205 --------~~~fD~I~~~~~~~------~~~~~~~~~LkpgG~l~  235 (511)
                              -...|+|+.....+      -+.+++.+.+|||..++
T Consensus       104 ~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV  148 (183)
T d1l7da1         104 QAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII  148 (183)
T ss_dssp             HHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred             HHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence                    13479998765442      24589999999998875

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.77  E-value=0.046  Score=45.20  Aligned_cols=94  Identities=14%  Similarity=0.024  Sum_probs=62.3

Q ss_pred             CCCCCEEEEEcCCc--cHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCC--CCCCC
Q psy7829         131 LVDGAKVLDLGSGS--GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREG--YLPEA  206 (511)
Q Consensus       131 ~~~~~~vLDiG~G~--G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~  206 (511)
                      .++|.+||=-|++.  |..++.+++..  .++|+++.-+++..+.+++.         +.+.+--...+..+.  ....+
T Consensus        29 ~~~g~~VLI~gaaGGVG~~aiQlak~~--Ga~Viat~~s~~k~~~~~~l---------Ga~~vi~~~~~~~~~~~~~~~~   97 (176)
T d1xa0a2          29 TPERGPVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLRVL---------GAKEVLAREDVMAERIRPLDKQ   97 (176)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHHHT---------TCSEEEECC---------CCSC
T ss_pred             CCCCCEEEEEeccchHHHHHHHHHHHc--CCceEEecCchHHHHHHHhc---------ccceeeecchhHHHHHHHhhcc
Confidence            45688999988644  56888889887  45899999998888888754         222221111111111  11236


Q ss_pred             CccEEEecCCCCchHHHHHhhcccCcEEEE
Q psy7829         207 PYDVIYYGGCVSEVPSRVLNQLKKGGRILA  236 (511)
Q Consensus       207 ~fD~I~~~~~~~~~~~~~~~~LkpgG~l~~  236 (511)
                      .||+|+-... ........+.|+|||+++.
T Consensus        98 gvD~vid~vg-g~~~~~~l~~l~~~Griv~  126 (176)
T d1xa0a2          98 RWAAAVDPVG-GRTLATVLSRMRYGGAVAV  126 (176)
T ss_dssp             CEEEEEECST-TTTHHHHHHTEEEEEEEEE
T ss_pred             CcCEEEEcCC-chhHHHHHHHhCCCceEEE
Confidence            7998877654 4456899999999999987

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.60  E-value=0.09  Score=49.00  Aligned_cols=50  Identities=18%  Similarity=-0.061  Sum_probs=42.8

Q ss_pred             CCCEEEEEeccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccc
Q psy7829         373 RGAKVLEIGSGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHI  423 (511)
Q Consensus       373 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v  423 (511)
                      .+.+|||..||||..++.+|+..+ ..+|++.|++++.++...+|+..+++
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~   94 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFD   94 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCC
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCc
Confidence            678999999999999999888774 36899999999999888888776554

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=93.38  E-value=0.12  Score=42.75  Aligned_cols=94  Identities=21%  Similarity=0.173  Sum_probs=64.5

Q ss_pred             cCCCCCEEEEEcCCc--cHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCC--CC---C
Q psy7829         130 HLVDGAKVLDLGSGS--GYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAR--EG---Y  202 (511)
Q Consensus       130 ~~~~~~~vLDiG~G~--G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~--~~---~  202 (511)
                      .+++|++||=.|++.  |..++.+++..  .++|+++..+++..+.+++.         +.+.+ +...|-.  +.   .
T Consensus        26 ~v~~G~~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~---------Ga~~v-i~~~~~~~~~~~~~~   93 (182)
T d1v3va2          26 GVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQI---------GFDAA-FNYKTVNSLEEALKK   93 (182)
T ss_dssp             CCCSSCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT---------TCSEE-EETTSCSCHHHHHHH
T ss_pred             CCCCCCEEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCHHHHHHHHhh---------hhhhh-cccccccHHHHHHHH
Confidence            378999999888865  56778888887  45899999998887777654         12222 2212211  00   0


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhhcccCcEEEE
Q psy7829         203 LPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILA  236 (511)
Q Consensus       203 ~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~l~~  236 (511)
                      .....+|+|+-... ....+...+.|+|+|++++
T Consensus        94 ~~~~Gvd~v~D~vG-~~~~~~~~~~l~~~G~~v~  126 (182)
T d1v3va2          94 ASPDGYDCYFDNVG-GEFLNTVLSQMKDFGKIAI  126 (182)
T ss_dssp             HCTTCEEEEEESSC-HHHHHHHGGGEEEEEEEEE
T ss_pred             hhcCCCceeEEecC-chhhhhhhhhccCCCeEEe
Confidence            12356999887655 4566889999999999987

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.34  E-value=0.16  Score=41.62  Aligned_cols=100  Identities=16%  Similarity=0.213  Sum_probs=61.3

Q ss_pred             cCCCCCCEEEEEeccccH-HHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccccccchhhhhcccC
Q psy7829         369 LNLHRGAKVLEIGSGSGY-LATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIPHILDLCYLNLHR  447 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~-~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l~~~~d~i~~~l~~  447 (511)
                      ..+++|++||=+|||.-. .++.+++..|. ..|+++|.+++..+.+++ ++...  ++..+..+..    +.+. .+.+
T Consensus        24 ~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~~a~~-~Ga~~--~i~~~~~~~~----~~i~-~~t~   94 (174)
T d1f8fa2          24 LKVTPASSFVTWGAGAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQ-LGATH--VINSKTQDPV----AAIK-EITD   94 (174)
T ss_dssp             TCCCTTCEEEEESCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHH-HTCSE--EEETTTSCHH----HHHH-HHTT
T ss_pred             hCCCCCCEEEEeCCCHHHhhhhhccccccc-ceeeeeccHHHHHHHHHH-cCCeE--EEeCCCcCHH----HHHH-HHcC
Confidence            678999999999998544 56777777764 578889999988777654 44322  2211111111    1111 1122


Q ss_pred             C--cEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         448 G--AKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       448 ~--~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      +  +.++ -+.|.........+.++|+|+++.+
T Consensus        95 gg~D~vi-d~~G~~~~~~~~~~~~~~~G~i~~~  126 (174)
T d1f8fa2          95 GGVNFAL-ESTGSPEILKQGVDALGILGKIAVV  126 (174)
T ss_dssp             SCEEEEE-ECSCCHHHHHHHHHTEEEEEEEEEC
T ss_pred             CCCcEEE-EcCCcHHHHHHHHhcccCceEEEEE
Confidence            2  2333 3456666667777788899988765

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.24  E-value=0.12  Score=42.20  Aligned_cols=106  Identities=12%  Similarity=0.144  Sum_probs=60.2

Q ss_pred             HHHHHhhcCCCCCCEEEEEec-c-ccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccccccch
Q psy7829         362 HILDLCYLNLHRGAKVLEIGS-G-SGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIPHILD  439 (511)
Q Consensus       362 ~~~~~~~~~~~~~~~vLdiG~-G-~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l~~~~d  439 (511)
                      +++..  ..++++++||=+|+ | .|..++.+++..+. .+|+++|.+++..+.+.+ ++...  ++..+..+..+    
T Consensus        18 ~al~~--~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~-~~V~~~~~~~~~~~~~~~-~Ga~~--~i~~~~~~~~~----   87 (170)
T d1jvba2          18 RAVRK--ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVREEAVEAAKR-AGADY--VINASMQDPLA----   87 (170)
T ss_dssp             HHHHH--TTCCTTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSHHHHHHHHH-HTCSE--EEETTTSCHHH----
T ss_pred             HHHHH--hCCCCCCEEEEEeccccceeeeeeccccccc-ccccccccchhhHHHHHH-cCCce--eeccCCcCHHH----
Confidence            44444  68899999999997 3 45567777777753 689999999887776654 33221  11111111111    


Q ss_pred             hhhhcccCC--cEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         440 LCYLNLHRG--AKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       440 ~i~~~l~~~--~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .+.....++  ..++| +.|.........+.++|+|+++.+
T Consensus        88 ~~~~~~~~~~~d~vid-~~g~~~~~~~a~~~l~~~G~iv~~  127 (170)
T d1jvba2          88 EIRRITESKGVDAVID-LNNSEKTLSVYPKALAKQGKYVMV  127 (170)
T ss_dssp             HHHHHTTTSCEEEEEE-SCCCHHHHTTGGGGEEEEEEEEEC
T ss_pred             HHHHHhhcccchhhhc-ccccchHHHhhhhhcccCCEEEEe
Confidence            111111122  23333 334444445555677888888766

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.09  E-value=0.18  Score=41.25  Aligned_cols=47  Identities=17%  Similarity=0.194  Sum_probs=38.2

Q ss_pred             cCCCCCCEEEEEeccccH-HHHHHHHHhCCCcEEEEEcCCHHHHHHHHh
Q psy7829         369 LNLHRGAKVLEIGSGSGY-LATLMAHLVGPTGHVTGLEHMMDIAIESIA  416 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~-~~~~la~~~~~~~~v~~id~~~~~~~~~~~  416 (511)
                      ..+++|++||=+|||... .++.+++..|. .+|+++|.+++..+.+.+
T Consensus        23 a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~-~~Vi~~d~~~~kl~~a~~   70 (174)
T d1p0fa2          23 AKVTPGSTCAVFGLGGVGFSAIVGCKAAGA-SRIIGVGTHKDKFPKAIE   70 (174)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHH
T ss_pred             hCCCCCCEEEEECCCchhHHHHHHHHHcCC-ceeeccCChHHHHHHHHH
Confidence            678999999999998766 45667777763 689999999888877654

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=93.06  E-value=0.22  Score=40.58  Aligned_cols=55  Identities=18%  Similarity=0.101  Sum_probs=39.5

Q ss_pred             HHHHHhhcCCCCCCEEEEEeccccHH-HHHHHHHhCCCcEEEEEcCCHHHHHHHHhh
Q psy7829         362 HILDLCYLNLHRGAKVLEIGSGSGYL-ATLMAHLVGPTGHVTGLEHMMDIAIESIAN  417 (511)
Q Consensus       362 ~~~~~~~~~~~~~~~vLdiG~G~G~~-~~~la~~~~~~~~v~~id~~~~~~~~~~~~  417 (511)
                      +.+......+++|++||=+|+|+... ++.+++..+. .+|+++|.+++..+.+++.
T Consensus        21 ~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~-~~vv~~~~~~~k~~~~~~~   76 (172)
T d1h2ba2          21 RAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTP-ATVIALDVKEEKLKLAERL   76 (172)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCC-CEEEEEESSHHHHHHHHHT
T ss_pred             HHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcC-cccccccchhHHHHHHhhc
Confidence            34443223578999999999987664 5677777754 6899999998877766653

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=93.04  E-value=0.2  Score=41.26  Aligned_cols=100  Identities=13%  Similarity=0.119  Sum_probs=59.3

Q ss_pred             hcCCCCCCEEEEEeccc--cHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccccccchhhhhcc
Q psy7829         368 YLNLHRGAKVLEIGSGS--GYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIPHILDLCYLNL  445 (511)
Q Consensus       368 ~~~~~~~~~vLdiG~G~--G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l~~~~d~i~~~l  445 (511)
                      ...+++|++||=.|++.  |..++.+|+..|  .+|+++..+++..+...+ .+...+  +..+.....    +.+....
T Consensus        24 ~~~v~~G~~VlV~ga~ggvG~~aiqlak~~G--a~vi~~~~~~~~~~~~~~-~Ga~~v--i~~~~~~~~----~~~~~~~   94 (182)
T d1v3va2          24 VCGVKGGETVLVSAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKIAYLKQ-IGFDAA--FNYKTVNSL----EEALKKA   94 (182)
T ss_dssp             TTCCCSSCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH-TTCSEE--EETTSCSCH----HHHHHHH
T ss_pred             HhCCCCCCEEEEEeCCCchhHHHHHHHHccC--CEEEEeCCCHHHHHHHHh-hhhhhh--cccccccHH----HHHHHHh
Confidence            46889999999888855  457788898887  899999998876655433 343322  111111111    1111111


Q ss_pred             cCC--cEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         446 HRG--AKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       446 ~~~--~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      .+.  ..++|  |-.|.......+.++++|+++.+
T Consensus        95 ~~~Gvd~v~D--~vG~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2          95 SPDGYDCYFD--NVGGEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             CTTCEEEEEE--SSCHHHHHHHGGGEEEEEEEEEC
T ss_pred             hcCCCceeEE--ecCchhhhhhhhhccCCCeEEee
Confidence            222  23444  32255666777778888887765

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=93.00  E-value=0.08  Score=48.40  Aligned_cols=73  Identities=18%  Similarity=0.049  Sum_probs=54.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCC-CCCCccEE
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYL-PEAPYDVI  211 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I  211 (511)
                      .+.+|||+.||.|.++..|.+.. - -.+.++|+++.+++..+.|....            .++|+.+... ....+|++
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG-~-~~v~a~e~d~~a~~~~~~N~~~~------------~~~Di~~~~~~~~~~~Dll   75 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCG-A-ECVYSNEWDKYAQEVYEMNFGEK------------PEGDITQVNEKTIPDHDIL   75 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTT-C-EEEEEECCCHHHHHHHHHHHSCC------------CBSCGGGSCGGGSCCCSEE
T ss_pred             CCCeEEEECccccHHHHHHHHCC-C-eEEEEEeCCHHHHHHHHHHCCCC------------CcCchhcCchhhcceeeee
Confidence            67899999999999999887653 2 34678999999999998886531            1366654222 12468999


Q ss_pred             EecCCCCc
Q psy7829         212 YYGGCVSE  219 (511)
Q Consensus       212 ~~~~~~~~  219 (511)
                      +.+.+|+.
T Consensus        76 ~ggpPCq~   83 (327)
T d2c7pa1          76 CAGFPCQA   83 (327)
T ss_dssp             EEECCCTT
T ss_pred             ecccccch
Confidence            99999843

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.10  E-value=0.28  Score=40.21  Aligned_cols=49  Identities=14%  Similarity=0.150  Sum_probs=38.5

Q ss_pred             cCCCCCCEEEEEeccccH-HHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc
Q psy7829         369 LNLHRGAKVLEIGSGSGY-LATLMAHLVGPTGHVTGLEHMMDIAIESIANI  418 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~-~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~  418 (511)
                      ..+++|++|+=+|||... +++.+++..|. .+|+++|.+++..+.+++.-
T Consensus        25 ~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~-~~Vi~vd~~~~kl~~Ak~~G   74 (176)
T d1d1ta2          25 GKVKPGSTCVVFGLGGVGLSVIMGCKSAGA-SRIIGIDLNKDKFEKAMAVG   74 (176)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHHT
T ss_pred             hCCCCCCEEEEECCCchhHHHHHHHHHcCC-ceEEEecCcHHHHHHHHhcC
Confidence            578999999999998766 45666776643 68999999998888766543

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.91  E-value=0.061  Score=49.51  Aligned_cols=76  Identities=16%  Similarity=0.127  Sum_probs=51.8

Q ss_pred             CCEEEEEcCCccHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCC---CCCcc
Q psy7829         134 GAKVLDLGSGSGYQTCVFAHMVGPTG-KVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLP---EAPYD  209 (511)
Q Consensus       134 ~~~vLDiG~G~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD  209 (511)
                      ..+|+|+.||.|.++..+.+.. -.. .+.++|+++.+++..+.|..          +..++.+|+.+....   ...+|
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG-~~~~~~~a~E~~~~a~~~~~~n~~----------~~~~~~~di~~~~~~~~~~~~~D   70 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESC-IPAQVVAAIDVNTVANEVYKYNFP----------HTQLLAKTIEGITLEEFDRLSFD   70 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHT-CSEEEEEEECCCHHHHHHHHHHCT----------TSCEECSCGGGCCHHHHHHHCCS
T ss_pred             CCEEEEcCcCccHHHHHHHHcC-CCCeEEEEEECCHHHHHHHHHHCC----------CCCcccCchhhCCHhHcCCCCcc
Confidence            4589999999999988876653 222 36789999999888887743          245666777643211   13689


Q ss_pred             EEEecCCCCch
Q psy7829         210 VIYYGGCVSEV  220 (511)
Q Consensus       210 ~I~~~~~~~~~  220 (511)
                      +++.+.+|+.+
T Consensus        71 ll~ggpPCq~f   81 (343)
T d1g55a_          71 MILMSPPCQPF   81 (343)
T ss_dssp             EEEECCC----
T ss_pred             EEEeecccccc
Confidence            99999998544

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=91.79  E-value=0.63  Score=42.93  Aligned_cols=139  Identities=14%  Similarity=0.110  Sum_probs=76.2

Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCCCCCcccccC-CCcccchhHHHHH--------HHHHHhhc-CCCCC
Q psy7829          66 TDLVNHLRDIGKIRTERVAQAFYKVDRGNFANEEPYQDVSASLG-YAGVMNAPNQIAD--------AAENLKLH-LVDGA  135 (511)
Q Consensus        66 ~~l~~~l~~~~~~~~~~~~~a~~~~~r~~~~~~~~y~~~~~~~~-~~~~~~~p~~~~~--------~~~~l~~~-~~~~~  135 (511)
                      ..+.+.++..|.+.-+..++-...-|..      -|+...-.+| .|..+++|.+...        +++.+... ..+..
T Consensus         8 ~~i~~~i~~~G~i~f~~fM~~~LY~p~~------GYY~~~~~iG~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~~~~~   81 (365)
T d1zkda1           8 TEIKRLIKAAGPMPVWRYMELCLGHPEH------GYYVTRDPLGREGDFTTSPEISQMFGELLGLWSASVWKAADEPQTL   81 (365)
T ss_dssp             HHHHHHHHHHCSEEHHHHHHHHHHCTTT------CTTTCC--------CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSE
T ss_pred             HHHHHHHHhcCCccHHHHHHHHcCCCCc------cccCCCCCCCCCCCeECCCchHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            3455566677877666666554444332      2222222344 2455666654322        22222211 12345


Q ss_pred             EEEEEcCCccHHHHHHHHHhC------CCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCcc
Q psy7829         136 KVLDLGSGSGYQTCVFAHMVG------PTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYD  209 (511)
Q Consensus       136 ~vLDiG~G~G~~~~~la~~~~------~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  209 (511)
                      .|+|+|+|+|.++..+.+.+.      ...+++.+|.|+.+.+.-++++..       ..++.++ .+....+   ...-
T Consensus        82 ~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~-------~~~i~w~-~~~~~~~---~~~g  150 (365)
T d1zkda1          82 RLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG-------IRNIHWH-DSFEDVP---EGPA  150 (365)
T ss_dssp             EEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT-------CSSEEEE-SSGGGSC---CSSE
T ss_pred             eEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc-------cccceec-cChhhcc---cCCe
Confidence            799999999999988877653      245689999999987777766553       2356544 3332211   1235


Q ss_pred             EEEecCCCCchH
Q psy7829         210 VIYYGGCVSEVP  221 (511)
Q Consensus       210 ~I~~~~~~~~~~  221 (511)
                      +|+++..+..+|
T Consensus       151 ~iiaNE~fDAlP  162 (365)
T d1zkda1         151 VILANEYFDVLP  162 (365)
T ss_dssp             EEEEESSGGGSC
T ss_pred             EEEecccCcccc
Confidence            777876665554

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=91.62  E-value=0.48  Score=43.34  Aligned_cols=83  Identities=16%  Similarity=0.143  Sum_probs=47.1

Q ss_pred             CEEEEEcCCccHHHHHH--------HHH-------hCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCC--eEEEEcc
Q psy7829         135 AKVLDLGSGSGYQTCVF--------AHM-------VGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGR--VRIVEAD  197 (511)
Q Consensus       135 ~~vLDiG~G~G~~~~~l--------a~~-------~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~--v~~~~~d  197 (511)
                      -+|.|+||.+|..+..+        .+.       -.|.-+|+--|+-..-....=+.+.....   ..++  +.-+.+.
T Consensus        53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~---~~~~~f~~gvpGS  129 (359)
T d1m6ex_          53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEND---VDGVCFINGVPGS  129 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCS---CTTCEEEEEEESC
T ss_pred             eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhcccccc---CCCCeEEEecCCc
Confidence            47999999999776422        111       12345666677644333222222222110   1112  3445566


Q ss_pred             CCCCCCCCCCccEEEecCCCCch
Q psy7829         198 AREGYLPEAPYDVIYYGGCVSEV  220 (511)
Q Consensus       198 ~~~~~~~~~~fD~I~~~~~~~~~  220 (511)
                      +.....+.++.|++++..++||+
T Consensus       130 FY~rLfP~~Slh~~~Ss~alHWL  152 (359)
T d1m6ex_         130 FYGRLFPRNTLHFIHSSYSLMWL  152 (359)
T ss_dssp             SSSCCSCTTCBSCEEEESCTTBC
T ss_pred             hhhhcCCCCceEEeeehhhhhhh
Confidence            66656677899999999888664

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.42  E-value=0.37  Score=39.44  Aligned_cols=99  Identities=18%  Similarity=0.190  Sum_probs=59.4

Q ss_pred             cCCCCCCEEEEEe--ccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccccccchhhhhccc
Q psy7829         369 LNLHRGAKVLEIG--SGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIPHILDLCYLNLH  446 (511)
Q Consensus       369 ~~~~~~~~vLdiG--~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l~~~~d~i~~~l~  446 (511)
                      ..+++|++||=.|  .|.|..++.+|+..|  .+|+++..+.+..+..+ ..+...+  +.....+    ..+.+.....
T Consensus        21 ~~~~~g~~VlI~ga~g~vG~~~iqla~~~g--~~vi~~~~~~~~~~~l~-~~Ga~~v--i~~~~~~----~~~~v~~~t~   91 (183)
T d1pqwa_          21 GRLSPGERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDAKREMLS-RLGVEYV--GDSRSVD----FADEILELTD   91 (183)
T ss_dssp             SCCCTTCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHH-TTCCSEE--EETTCST----HHHHHHHHTT
T ss_pred             hCCCCCCEEEEECCCCCcccccchhhcccc--ccceeeecccccccccc-ccccccc--ccCCccC----HHHHHHHHhC
Confidence            5788999999877  456778899998887  78999888877665544 3444322  1111111    1122222222


Q ss_pred             C-C-cEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         447 R-G-AKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       447 ~-~-~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      + + ..++|  |-.|.......+.++++|+++.+
T Consensus        92 ~~g~d~v~d--~~g~~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          92 GYGVDVVLN--SLAGEAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             TCCEEEEEE--CCCTHHHHHHHHTEEEEEEEEEC
T ss_pred             CCCEEEEEe--cccchHHHHHHHHhcCCCEEEEE
Confidence            2 2 23333  32245666777888888988876

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=91.04  E-value=0.2  Score=40.67  Aligned_cols=93  Identities=15%  Similarity=0.133  Sum_probs=62.1

Q ss_pred             CCCCCEEEEEcC--CccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCC-CCC--CCC
Q psy7829         131 LVDGAKVLDLGS--GSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAR-EGY--LPE  205 (511)
Q Consensus       131 ~~~~~~vLDiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~-~~~--~~~  205 (511)
                      .+++..||=-|+  |-|..+..+|+..+  ++|+++.-+++..+.+++.         +.+.+. ...|.. +..  ...
T Consensus        21 ~~~~~~VLV~gaaGgVG~~avQlAk~~G--a~Viat~~s~~k~~~~~~l---------Gad~vi-~~~~~~~~~~~~~~~   88 (167)
T d1tt7a2          21 SPEKGSVLVTGATGGVGGIAVSMLNKRG--YDVVASTGNREAADYLKQL---------GASEVI-SREDVYDGTLKALSK   88 (167)
T ss_dssp             CGGGCCEEEESTTSHHHHHHHHHHHHHT--CCEEEEESSSSTHHHHHHH---------TCSEEE-EHHHHCSSCCCSSCC
T ss_pred             CCCCCEEEEeCCcchHHHHHHHHHHHcC--CceEEEecCHHHHHHHHhh---------cccceE-eccchhchhhhcccC
Confidence            335667887774  34678899999984  5899999998888877664         222221 112211 111  123


Q ss_pred             CCccEEEecCCCCchHHHHHhhcccCcEEEE
Q psy7829         206 APYDVIYYGGCVSEVPSRVLNQLKKGGRILA  236 (511)
Q Consensus       206 ~~fD~I~~~~~~~~~~~~~~~~LkpgG~l~~  236 (511)
                      +.+|+|+-... .....+..+.|+|+|++++
T Consensus        89 ~gvd~vid~vg-g~~~~~~~~~l~~~G~iv~  118 (167)
T d1tt7a2          89 QQWQGAVDPVG-GKQLASLLSKIQYGGSVAV  118 (167)
T ss_dssp             CCEEEEEESCC-THHHHHHHTTEEEEEEEEE
T ss_pred             CCceEEEecCc-HHHHHHHHHHhccCceEEE
Confidence            56998877654 4456789999999999987

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=91.01  E-value=0.66  Score=37.53  Aligned_cols=50  Identities=16%  Similarity=0.197  Sum_probs=37.7

Q ss_pred             cCCCCCCEEEEEeccccHH-HHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc
Q psy7829         369 LNLHRGAKVLEIGSGSGYL-ATLMAHLVGPTGHVTGLEHMMDIAIESIANIST  420 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~-~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~  420 (511)
                      ..+++|++||=+|+|.+.. +..+++..+ ...|+++|.+++..+.+.+ ++.
T Consensus        24 a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g-~~~Vi~~~~~~~rl~~a~~-~GA   74 (175)
T d1cdoa2          24 AKVEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKV-FGA   74 (175)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH-TTC
T ss_pred             hCCCCCCEEEEEecCCccchHHHHHHHHh-hchheeecchHHHHHHHHH-cCC
Confidence            5789999999999999664 455666654 2789999999888766554 443

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.68  E-value=0.24  Score=40.33  Aligned_cols=100  Identities=18%  Similarity=0.086  Sum_probs=59.1

Q ss_pred             HHHHHhhcCCCCCCEEEEEec-c-ccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccccccccccccccch
Q psy7829         362 HILDLCYLNLHRGAKVLEIGS-G-SGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIANETIEIIPHILD  439 (511)
Q Consensus       362 ~~~~~~~~~~~~~~~vLdiG~-G-~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~~d~~~~l~~~~d  439 (511)
                      +++..  ..+++|++||=.|. | .|..++.+|+..|  .+|++++.+++..+.+. .++...+--    ..+..     
T Consensus        18 ~al~~--~~~~~g~~VlI~ga~G~vG~~aiqlak~~G--~~vi~~~~~~~~~~~~~-~lGa~~~i~----~~~~~-----   83 (171)
T d1iz0a2          18 LALKR--AQARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEKLALPL-ALGAEEAAT----YAEVP-----   83 (171)
T ss_dssp             HHHHH--TTCCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGGSHHHH-HTTCSEEEE----GGGHH-----
T ss_pred             HHHHH--hCCCCCCEEEEEeccccchhhhhhhhcccc--ccccccccccccccccc-ccccceeee----hhhhh-----
Confidence            34444  67899999999884 3 3667888998886  79999998876655544 344332210    00100     


Q ss_pred             hhhhcccCCcEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       440 ~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                      ....+...-+.++| +.| .. .....+.++|+|+++.+
T Consensus        84 ~~~~~~~g~D~v~d-~~G-~~-~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          84 ERAKAWGGLDLVLE-VRG-KE-VEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             HHHHHTTSEEEEEE-CSC-TT-HHHHHTTEEEEEEEEEC
T ss_pred             hhhhcccccccccc-ccc-hh-HHHHHHHHhcCCcEEEE
Confidence            01112222245666 334 33 34555678888888776

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=90.48  E-value=0.81  Score=37.03  Aligned_cols=49  Identities=12%  Similarity=0.127  Sum_probs=38.1

Q ss_pred             cCCCCCCEEEEEeccccH-HHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhc
Q psy7829         369 LNLHRGAKVLEIGSGSGY-LATLMAHLVGPTGHVTGLEHMMDIAIESIANI  418 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~-~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~  418 (511)
                      ..+++|++||=+|+|.+. .++.+++..+ ..+|+++|.+++..+.+.+.-
T Consensus        24 ~~vk~GdtVlV~GaGG~G~~~~~~~~~~g-~~~Vi~~~~~~~k~~~a~~~G   73 (176)
T d2jhfa2          24 AKVTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKEVG   73 (176)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHTT
T ss_pred             hCCCCCCEEEEECCCCcHHHHHHHHHHcC-CceEEeecCcHHHHHHHHHhC
Confidence            578999999999997655 4566666664 269999999998877766553

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=90.22  E-value=0.7  Score=38.03  Aligned_cols=36  Identities=19%  Similarity=0.304  Sum_probs=26.9

Q ss_pred             hcCCCCCCEEEEE--ecc-ccHHHHHHHHHhCCCcEEEEEc
Q psy7829         368 YLNLHRGAKVLEI--GSG-SGYLATLMAHLVGPTGHVTGLE  405 (511)
Q Consensus       368 ~~~~~~~~~vLdi--G~G-~G~~~~~la~~~~~~~~v~~id  405 (511)
                      ...+++|++||=+  |+| .|..++.+|+..|  .+|+++=
T Consensus        23 ~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~G--a~vI~~v   61 (189)
T d1gu7a2          23 YVKLTPGKDWFIQNGGTSAVGKYASQIGKLLN--FNSISVI   61 (189)
T ss_dssp             SSCCCTTTCEEEESCTTSHHHHHHHHHHHHHT--CEEEEEE
T ss_pred             HhCCCCCCEEEEEeCCCchHHHHHHHHHhhcC--CeEEEEE
Confidence            3578899888777  333 4667888999987  7888874

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.96  E-value=0.37  Score=38.97  Aligned_cols=89  Identities=18%  Similarity=0.221  Sum_probs=53.6

Q ss_pred             EEEEEcCCc-cH-HHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCccEEEe
Q psy7829         136 KVLDLGSGS-GY-QTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYDVIYY  213 (511)
Q Consensus       136 ~vLDiG~G~-G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~  213 (511)
                      +|+=||||. |. ++..+.+. +...+|+++|.+++.++.+++.-.           +.....+...  ......|+|+.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~-g~~~~I~~~D~~~~~~~~a~~~~~-----------~~~~~~~~~~--~~~~~~dlIil   68 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINPESISKAVDLGI-----------IDEGTTSIAK--VEDFSPDFVML   68 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCHHHHHHHHHTTS-----------CSEEESCGGG--GGGTCCSEEEE
T ss_pred             EEEEEccCHHHHHHHHHHHhc-CCCeEEEEEECChHHHHHHHHhhc-----------chhhhhhhhh--hhccccccccc
Confidence            578899875 33 33344333 456789999999999988876411           1111112111  11235799998


Q ss_pred             cCCCCc---hHHHHHhhcccCcEEEEEEc
Q psy7829         214 GGCVSE---VPSRVLNQLKKGGRILAPIG  239 (511)
Q Consensus       214 ~~~~~~---~~~~~~~~LkpgG~l~~~~~  239 (511)
                      ..+...   +..++...++++-.+ +.+.
T Consensus        69 a~p~~~~~~vl~~l~~~~~~~~ii-~d~~   96 (171)
T d2g5ca2          69 SSPVRTFREIAKKLSYILSEDATV-TDQG   96 (171)
T ss_dssp             CSCHHHHHHHHHHHHHHSCTTCEE-EECC
T ss_pred             cCCchhhhhhhhhhhccccccccc-cccc
Confidence            877654   346778888877544 4444

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=89.89  E-value=0.41  Score=38.48  Aligned_cols=85  Identities=16%  Similarity=0.242  Sum_probs=54.6

Q ss_pred             CCCEEEEEeccc-cHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhcccccccccc------------cc-----cc-c-
Q psy7829         373 RGAKVLEIGSGS-GYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLIA------------NE-----TI-E-  432 (511)
Q Consensus       373 ~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i~------------~d-----~~-~-  432 (511)
                      +..+|+=||+|. |..++..|+.+|  ..|+.+|.+++..++....+.. +++...            .|     .+ . 
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lG--A~V~~~D~~~~~l~~l~~~~~~-~~~~~~~~~~~l~~~~~~aDivI~aalipG  107 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINVERLSYLETLFGS-RVELLYSNSAEIETAVAEADLLIGAVLVPG  107 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHGG-GSEEEECCHHHHHHHHHTCSEEEECCCCTT
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCC--CEEEEEeCcHHHHHHHHHhhcc-cceeehhhhhhHHHhhccCcEEEEeeecCC
Confidence            568899999997 556888888887  8999999998877754433321 121111            11     00 0 


Q ss_pred             -ccc-ccchhhhhcccCCcEEEEEcCCccH
Q psy7829         433 -IIP-HILDLCYLNLHRGAKVLEIGSGSGY  460 (511)
Q Consensus       433 -~l~-~~~d~i~~~l~~~~~vLD~~~g~g~  460 (511)
                       ..| -+-...+..+++|..++|+.|..|.
T Consensus       108 ~~aP~lIt~~mv~~Mk~GSVIVDvaidqGG  137 (168)
T d1pjca1         108 RRAPILVPASLVEQMRTGSVIVDVAVDQGG  137 (168)
T ss_dssp             SSCCCCBCHHHHTTSCTTCEEEETTCTTCC
T ss_pred             cccCeeecHHHHhhcCCCcEEEEeecCCCC
Confidence             001 1223345678999999999986654

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.47  E-value=0.59  Score=40.75  Aligned_cols=80  Identities=15%  Similarity=0.114  Sum_probs=55.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC---------
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMV-GPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY---------  202 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---------  202 (511)
                      +++.+|=.|+++|. +..+++.+ ....+|+.++.+++.++.+.+.+...+    ...++.++.+|+.+.-         
T Consensus         9 k~Kv~lITGas~GI-G~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~----~~~~~~~~~~Dls~~~~v~~~v~~~   83 (257)
T d1xg5a_           9 RDRLALVTGASGGI-GAAVARALVQQGLKVVGCARTVGNIEELAAECKSAG----YPGTLIPYRCDLSNEEDILSMFSAI   83 (257)
T ss_dssp             TTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT----CSSEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC----CCceEEEEEccCCCHHHHHHHHHHH
Confidence            47789999987763 33344333 235689999999999998888777643    2346888999987421         


Q ss_pred             -CCCCCccEEEecCCC
Q psy7829         203 -LPEAPYDVIYYGGCV  217 (511)
Q Consensus       203 -~~~~~fD~I~~~~~~  217 (511)
                       ...+..|+++.+...
T Consensus        84 ~~~~g~iD~lVnnAg~   99 (257)
T d1xg5a_          84 RSQHSGVDICINNAGL   99 (257)
T ss_dssp             HHHHCCCSEEEECCCC
T ss_pred             HHhcCCCCEEEecccc
Confidence             112678998877654

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=89.17  E-value=0.3  Score=40.06  Aligned_cols=90  Identities=18%  Similarity=0.189  Sum_probs=58.7

Q ss_pred             CCCEEEEEcCC--ccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc-CC-CCCCCCCCc
Q psy7829         133 DGAKVLDLGSG--SGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD-AR-EGYLPEAPY  208 (511)
Q Consensus       133 ~~~~vLDiG~G--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d-~~-~~~~~~~~f  208 (511)
                      ++..||=.|+.  .|..++.+|+..  ..+|+++.-+++..+.+++.-         .+.  ++.-+ .. ........+
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~--Ga~Via~~~~~~k~~~~~~lG---------ad~--vi~~~~~~~~~~l~~~~~   97 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKL--GYQVVAVSGRESTHEYLKSLG---------ASR--VLPRDEFAESRPLEKQVW   97 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHHHT---------EEE--EEEGGGSSSCCSSCCCCE
T ss_pred             CCCcEEEEEccccchHHHHHHHHHc--CCCeEEEecchhHHHHHHhhc---------ccc--ccccccHHHHHHHHhhcC
Confidence            34578766643  456888899987  458999999999887776541         111  22222 11 111123557


Q ss_pred             cEEEecCCCCchHHHHHhhcccCcEEEE
Q psy7829         209 DVIYYGGCVSEVPSRVLNQLKKGGRILA  236 (511)
Q Consensus       209 D~I~~~~~~~~~~~~~~~~LkpgG~l~~  236 (511)
                      |.|+ +...........+.|+++|+++.
T Consensus        98 ~~vv-D~Vgg~~~~~~l~~l~~~Griv~  124 (177)
T d1o89a2          98 AGAI-DTVGDKVLAKVLAQMNYGGCVAA  124 (177)
T ss_dssp             EEEE-ESSCHHHHHHHHHTEEEEEEEEE
T ss_pred             CeeE-EEcchHHHHHHHHHhccccceEe
Confidence            8775 55556677899999999999987

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=88.48  E-value=0.22  Score=41.32  Aligned_cols=99  Identities=11%  Similarity=0.096  Sum_probs=57.4

Q ss_pred             cCCCCCEEEEEcC--C-ccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEE-EccCCCCC---
Q psy7829         130 HLVDGAKVLDLGS--G-SGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIV-EADAREGY---  202 (511)
Q Consensus       130 ~~~~~~~vLDiG~--G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~-~~d~~~~~---  202 (511)
                      .+++|.+||=+.+  | .|..+..+|+..+  .+|+++--+++..+...+.+++.|     .+.+-.. ..|..+..   
T Consensus        25 ~~~~g~~vli~~ga~g~vG~~aiqlAk~~G--a~vI~~v~~~~~~~~~~~~~~~lG-----ad~vi~~~~~~~~~~~~~v   97 (189)
T d1gu7a2          25 KLTPGKDWFIQNGGTSAVGKYASQIGKLLN--FNSISVIRDRPNLDEVVASLKELG-----ATQVITEDQNNSREFGPTI   97 (189)
T ss_dssp             CCCTTTCEEEESCTTSHHHHHHHHHHHHHT--CEEEEEECCCTTHHHHHHHHHHHT-----CSEEEEHHHHHCGGGHHHH
T ss_pred             CCCCCCEEEEEeCCCchHHHHHHHHHhhcC--CeEEEEEecccccchHHhhhhhcc-----ccEEEeccccchhHHHHHH
Confidence            3678888887733  3 3567888999884  578877544444444444444433     2222111 11211100   


Q ss_pred             -----CCCCCccEEEecCCCCchHHHHHhhcccCcEEEE
Q psy7829         203 -----LPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILA  236 (511)
Q Consensus       203 -----~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~l~~  236 (511)
                           ...+.+|+|+-... ........+.|+|+|+++.
T Consensus        98 ~~~~~~~g~~vdvv~D~vg-~~~~~~~~~~l~~~G~~v~  135 (189)
T d1gu7a2          98 KEWIKQSGGEAKLALNCVG-GKSSTGIARKLNNNGLMLT  135 (189)
T ss_dssp             HHHHHHHTCCEEEEEESSC-HHHHHHHHHTSCTTCEEEE
T ss_pred             HHHHhhccCCceEEEECCC-cchhhhhhhhhcCCcEEEE
Confidence                 01246898885443 3345778899999999876

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=88.33  E-value=1.5  Score=35.30  Aligned_cols=50  Identities=14%  Similarity=0.224  Sum_probs=37.1

Q ss_pred             cCCCCCCEEEEEecccc-HHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccc
Q psy7829         369 LNLHRGAKVLEIGSGSG-YLATLMAHLVGPTGHVTGLEHMMDIAIESIANIST  420 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G-~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~  420 (511)
                      ..+++|++||=.|||.. .+++.+++..|. ..|+++|.+++..+.++ .++.
T Consensus        24 ~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~-~~vi~~~~~~~k~~~ak-~lGa   74 (176)
T d2fzwa2          24 AKLEPGSVCAVFGLGGVGLAVIMGCKVAGA-SRIIGVDINKDKFARAK-EFGA   74 (176)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHH-HHTC
T ss_pred             hCCCCCCEEEEecchhHHHHHHHHHHHHhc-CceEEEcccHHHHHHHH-HhCC
Confidence            67899999999988743 356777887753 68999999988766544 4553

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.12  E-value=0.4  Score=42.30  Aligned_cols=79  Identities=13%  Similarity=0.050  Sum_probs=53.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHhC--CCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCC--------
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMVG--PTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGY--------  202 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--------  202 (511)
                      .|.||.=|-.|++.++..+++.+.  ...+|+..+.+++.++.+.+.++..      ..++.++.+|+.+.-        
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dvs~~~sv~~~~~~   74 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE------GLSPRFHQLDIDDLQSIRALRDF   74 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT------TCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEEecCCHHHHHHHHHH
Confidence            367774444445555555555432  2458999999999999888888764      346889999987421        


Q ss_pred             --CCCCCccEEEecCCC
Q psy7829         203 --LPEAPYDVIYYGGCV  217 (511)
Q Consensus       203 --~~~~~fD~I~~~~~~  217 (511)
                        ...+..|+++.|...
T Consensus        75 ~~~~~g~iDiLVnNAGi   91 (275)
T d1wmaa1          75 LRKEYGGLDVLVNNAGI   91 (275)
T ss_dssp             HHHHHSSEEEEEECCCC
T ss_pred             HHHhcCCcEEEEEcCCc
Confidence              112678999988765

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=86.47  E-value=0.66  Score=37.82  Aligned_cols=41  Identities=24%  Similarity=0.224  Sum_probs=32.6

Q ss_pred             CCCEEEEEeccc-cHHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Q psy7829         373 RGAKVLEIGSGS-GYLATLMAHLVGPTGHVTGLEHMMDIAIESI  415 (511)
Q Consensus       373 ~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~id~~~~~~~~~~  415 (511)
                      +..+||=||+|. |..++..|..+|  .+|+.+|++++..++..
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lG--A~V~v~D~~~~~~~~l~   69 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAATKEQVE   69 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcC--CEEEEEeccHHHHHHHH
Confidence            567899999997 456788888887  89999999866555543

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.96  E-value=0.88  Score=33.81  Aligned_cols=92  Identities=15%  Similarity=0.120  Sum_probs=57.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHHh-CCCceEEEE--eCCHHHHHHHHHHHhccCCCcCCCCCeEEEEccCCCCCCCCCCcc
Q psy7829         133 DGAKVLDLGSGSGYQTCVFAHMV-GPTGKVIGV--EHIPELIEASLRNISKGNKDLLDSGRVRIVEADAREGYLPEAPYD  209 (511)
Q Consensus       133 ~~~~vLDiG~G~G~~~~~la~~~-~~~~~v~~i--D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  209 (511)
                      .+.+||=+|.|.=..  .-++.+ ..+++|+.+  +.+++....+.            ..++++..........  ..++
T Consensus        11 ~~k~vlVvG~G~va~--~ka~~ll~~ga~v~v~~~~~~~~~~~~~~------------~~~i~~~~~~~~~~dl--~~~~   74 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAE--RKARLLLEAGARLTVNALTFIPQFTVWAN------------EGMLTLVEGPFDETLL--DSCW   74 (113)
T ss_dssp             BTCEEEEECCSHHHH--HHHHHHHHTTBEEEEEESSCCHHHHHHHT------------TTSCEEEESSCCGGGG--TTCS
T ss_pred             CCCEEEEECCCHHHH--HHHHHHHHCCCeEEEEeccCChHHHHHHh------------cCCceeeccCCCHHHh--CCCc
Confidence            588999999887332  222221 124456655  44554443332            2357777766543222  4588


Q ss_pred             EEEecCCCCchHHHHHhhcccCcEEEEEEcc
Q psy7829         210 VIYYGGCVSEVPSRVLNQLKKGGRILAPIGP  240 (511)
Q Consensus       210 ~I~~~~~~~~~~~~~~~~LkpgG~l~~~~~~  240 (511)
                      +|+....-+.+..++.+..|+-|.++=.+..
T Consensus        75 lv~~at~d~~~n~~i~~~a~~~~ilVNv~D~  105 (113)
T d1pjqa1          75 LAIAATDDDTVNQRVSDAAESRRIFCNVVDA  105 (113)
T ss_dssp             EEEECCSCHHHHHHHHHHHHHTTCEEEETTC
T ss_pred             EEeecCCCHHHHHHHHHHHHHcCCEEEeCCC
Confidence            9988877777778899999999988764443

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=85.42  E-value=0.86  Score=42.36  Aligned_cols=51  Identities=14%  Similarity=0.105  Sum_probs=43.2

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHhcc
Q psy7829         131 LVDGAKVLDLGSGSGYQTCVFAHMVG-PTGKVIGVEHIPELIEASLRNISKG  181 (511)
Q Consensus       131 ~~~~~~vLDiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~  181 (511)
                      +.++..++|+|+-.|..+..++.... ...+|+++|.++...+..+++++.+
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n  261 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRY  261 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHT
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence            34677999999999999988887653 2468999999999999999998875

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.15  E-value=2.8  Score=34.01  Aligned_cols=111  Identities=14%  Similarity=0.118  Sum_probs=62.7

Q ss_pred             HHHHHHHHHhhcCCCCC--CEEEEEe--ccccHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHhhccccccccc-cccccc
Q psy7829         358 RSIAHILDLCYLNLHRG--AKVLEIG--SGSGYLATLMAHLVGPTGHVTGLEHMMDIAIESIANISTNHIDLI-ANETIE  432 (511)
Q Consensus       358 ~~~~~~~~~~~~~~~~~--~~vLdiG--~G~G~~~~~la~~~~~~~~v~~id~~~~~~~~~~~~~~~~~v~~i-~~d~~~  432 (511)
                      -.+++..-.....+++|  ++||=.|  -|.|..++.+|+..|. ..|+++..+.+......+.++...+--. ..+.. 
T Consensus        13 glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga-~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~-   90 (187)
T d1vj1a2          13 GLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGC-SRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVA-   90 (187)
T ss_dssp             HHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTC-SEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHH-
T ss_pred             HHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCC-cceecccchHHHHhhhhhcccceEEeeccchhHH-
Confidence            44444332223566766  7899877  4677899999999863 3577777777666665655654332211 11111 


Q ss_pred             cccccchhhhhcccCC-cEEEEEcCCccHHHHHHHHHhCCCcEEEEh
Q psy7829         433 IIPHILDLCYLNLHRG-AKVLEIGSGSGYLATLMAHLVGPTGHVTGL  478 (511)
Q Consensus       433 ~l~~~~d~i~~~l~~~-~~vLD~~~g~g~~~~~l~~~l~~~g~v~~~  478 (511)
                            +.+......+ +.++|-. | |.......+.++++|+++.+
T Consensus        91 ------~~~~~~~~~GvDvv~D~v-G-g~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2          91 ------EQLREACPGGVDVYFDNV-G-GDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             ------HHHHHHCTTCEEEEEESS-C-HHHHHHHHTTEEEEEEEEEC
T ss_pred             ------HHHHHHhccCceEEEecC-C-chhHHHHhhhccccccEEEe
Confidence                  1111111222 2334333 3 55566777788889988865

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.92  E-value=2.6  Score=34.28  Aligned_cols=93  Identities=16%  Similarity=0.245  Sum_probs=58.7

Q ss_pred             CCCC--CEEEEEc--CCccHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHhccCCCcCCCCCeEEEEcc---CCC---
Q psy7829         131 LVDG--AKVLDLG--SGSGYQTCVFAHMVGPTGKVIGVEHIPELIEASLRNISKGNKDLLDSGRVRIVEAD---ARE---  200 (511)
Q Consensus       131 ~~~~--~~vLDiG--~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d---~~~---  200 (511)
                      +++|  ..||-.|  .|.|..++.+|+..+. ..|+++..+++......+.+.        .+  .++...   ..+   
T Consensus        26 ~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga-~~vi~~~~~~e~~~~l~~~~g--------ad--~vi~~~~~~~~~~~~   94 (187)
T d1vj1a2          26 ISAGSNQTMVVSGAAGACGSLAGQIGHLLGC-SRVVGICGTQEKCLFLTSELG--------FD--AAVNYKTGNVAEQLR   94 (187)
T ss_dssp             CCTTSCCEEEESSTTSTTGGGHHHHHHHTTC-SEEEEEESSHHHHHHHHHHSC--------CS--EEEETTSSCHHHHHH
T ss_pred             CCCCCCCEEEEECCCchhhHHHHHHHHHcCC-cceecccchHHHHhhhhhccc--------ce--EEeeccchhHHHHHH
Confidence            5666  6799877  4568899999998853 357777777665554433321        22  122111   110   


Q ss_pred             CCCCCCCccEEEecCCCCchHHHHHhhcccCcEEEE
Q psy7829         201 GYLPEAPYDVIYYGGCVSEVPSRVLNQLKKGGRILA  236 (511)
Q Consensus       201 ~~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~l~~  236 (511)
                      ... ...+|+|+-... ........+.|+|+|+++.
T Consensus        95 ~~~-~~GvDvv~D~vG-g~~~~~~~~~l~~~G~iv~  128 (187)
T d1vj1a2          95 EAC-PGGVDVYFDNVG-GDISNTVISQMNENSHIIL  128 (187)
T ss_dssp             HHC-TTCEEEEEESSC-HHHHHHHHTTEEEEEEEEE
T ss_pred             HHh-ccCceEEEecCC-chhHHHHhhhccccccEEE
Confidence            011 245999986554 4556889999999999976

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=84.17  E-value=0.79  Score=42.62  Aligned_cols=50  Identities=12%  Similarity=-0.002  Sum_probs=39.4

Q ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHhhc
Q psy7829         369 LNLHRGAKVLEIGSGSGYLATLMAHLVG-PTGHVTGLEHMMDIAIESIANI  418 (511)
Q Consensus       369 ~~~~~~~~vLdiG~G~G~~~~~la~~~~-~~~~v~~id~~~~~~~~~~~~~  418 (511)
                      +.+.+++.++|+|+=.|..+..+++... ...+|+++|.++...+.-.+|+
T Consensus       208 ~~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi  258 (395)
T d2py6a1         208 LRFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVL  258 (395)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHH
T ss_pred             cCcCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHH
Confidence            4567889999999999999988887663 2369999999987776655444

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=80.94  E-value=3  Score=33.13  Aligned_cols=92  Identities=18%  Similarity=0.233  Sum_probs=52.8

Q ss_pred             EEEEEeccccHHHHHHHH---HhCCCcEEEEEcCCHHHHHHHHhhccccc----cc---cccccc------cccccccch
Q psy7829         376 KVLEIGSGSGYLATLMAH---LVGPTGHVTGLEHMMDIAIESIANISTNH----ID---LIANET------IEIIPHILD  439 (511)
Q Consensus       376 ~vLdiG~G~G~~~~~la~---~~~~~~~v~~id~~~~~~~~~~~~~~~~~----v~---~i~~d~------~~~l~~~~d  439 (511)
                      +|+=||||  ..+..+|+   ..+...+|+++|.+.+..+.+.+.-....    ..   ....|.      .......+.
T Consensus         3 ~I~IIG~G--~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~~~~~vl~   80 (171)
T d2g5ca2           3 NVLIVGVG--FMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAK   80 (171)
T ss_dssp             EEEEESCS--HHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHHHH
T ss_pred             EEEEEccC--HHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCchhhhhhhh
Confidence            46678876  44433333   23445689999999888887765432111    11   011111      011122334


Q ss_pred             hhhhcccCCcEEEEEcCCccHHHHHHHHHh
Q psy7829         440 LCYLNLHRGAKVLEIGSGSGYLATLMAHLV  469 (511)
Q Consensus       440 ~i~~~l~~~~~vLD~~~g~g~~~~~l~~~l  469 (511)
                      .+...++++..+.|++..-+.+...+.+.+
T Consensus        81 ~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~  110 (171)
T d2g5ca2          81 KLSYILSEDATVTDQGSVKGKLVYDLENIL  110 (171)
T ss_dssp             HHHHHSCTTCEEEECCSCCTHHHHHHHHHH
T ss_pred             hhhccccccccccccccccHHHHHHHHHhh
Confidence            444556788889998887788877776655