Psyllid ID: psy7830

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360----
Protein Sequence
MTLFGRPLKIERCVLAVFFILVSRGQGWKPDPGMPIEPPPDLRSEMYDEDNENEENFFYTRSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRVSSDFLCNLEYQLHPDVFPQPLNTSAEDTYTKMFPPPPGVRPRAVTFPLSSQERSPGNGSTKKYEFLPESTEDRYIFPQHILDILHGPNKTKSRHVQSKVTLLI
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHHcccccEEEEEEEHHHHHHHHHHcccccccccEEEEEccccccccccccccEEEEccccccccHHHHHccccccEEEEEEcccccEEEEEEEEcccccEEEEEEccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHEHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHccHHHccccHHccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHcccccEEEEEccHHHccHHHccEEEEEEccEEccccHHHHHHEEEEEEEEEEEcccccEEEEEEEEccccEEEEEEccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccEcEEEEEc
Coil and Loop (DISEMBL)
mtlfgrplkiERCVLAVFFILVSrgqgwkpdpgmpiepppdlrsemydedneneenffyTRSYADFLEGLKerkllnhprvEEAFYAVRRadfinvkpkfgfcdipyafanqvvmeppsyIARCLEQLVDHLqngsrvldigsgqGYMATAKEWLSSVRQLLLPetlnnslknikisrpdllqskTLEFILKDarwghaeggpydviffgagTTEVSKTILSqlkpngrivapvgnvwrqnlsvidkgpdgsissKILRRVSSDFLCnleyqlhpdvfpqplntsaedtytkmfppppgvrpravtfplssqerspgngstkkyeflpestedryifpqhildilhgpnktksrhvqsKVTLLI
Flexible Loop (DISEMBL)
mtlfgrplkieRCVLAVFFILVsrgqgwkpdpgmPIEPPPDLRSEMYDEDNENEENFFYTRSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNslknikisrpdllqSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSqlkpngrivapvgNVWRQNLSvidkgpdgsisSKILRRVSSDFLCNLEYQLHPDVFPQPLNTSAEDTYTKMFPPPPGVRPRAVTFplssqerspgngstkkYEFLPESTEDRYIFPQHILDilhgpnktksrhvqskvtlli
Low Complexity Region (SEG)
MTLFGRPLKIERCVLAVFFILVSRGQGWKpdpgmpiepppDLRSEMYdedneneenFFYTRSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRVSSDFLCNLEYQLHPDVFPQPLNTSAEDTYTKMFPPPPGVRPRAVTFPLSSQERSPGNGSTKKYEFLPESTEDRYIFPQHILDILHGPNKTKSRHVQSKVTLLI
Disordered region (IsUnstruct)
***FGRPLKIERCVLAVFFILVSRGQGW***************************NFFYTRSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRVSSDFLCNLEYQLHPDVFP*****************************************************DRYIFPQHILDILH******************
Disordered Region (DISOPRED)
***FGRPLKIERCVLAVFFILVS***************************************YADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRVSSDFLCNLEYQL******************************************************PESTEDRYIFPQHILDILHGPNKT***HVQSKVTLLI
Disordered Region (DISEMBL)
MTLFGRPLKIERCVLAVFFILVSRGQGWKPDPGMPIEPPPDLRSEMYDEDNENEENFFYTRSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRVSSDFLCNLEYQLHPDVFPQPLNTSAEDTYTKMFPPPPGVRPRAVTFP*************KKYEFLPESTEDRYIFPQHILDILHGPN*********KVTLLI
Disordered Region (DISPRO)
*TLFGRPLKIERCVLAVFFILVSRGQGWKPDPGMPIEPPPDLRSEMYDEDNENEENFFYTRSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRVSSDFLCNLE************************PPPPGV*PR*************GNGSTKKYEFLPESTEDRYIFPQHILDILHGPNKTKSRHVQSKVTLLI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTLFGRPLKIERCVLAVFFILVSRGQGWKPDPGMPIEPPPDLRSEMYDEDNENEENFFYTRSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRVSSDFLCNLEYQLHPDVFPQPLNTSAEDTYTKMFPPPPGVRPRAVTFPLSSQERSPGNGSTKKYEFLPESTEDRYIFPQHILDILHGPNKTKSRHVQSKVTLLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	364	2.2.26 [Sep-21-2011]
Q42539	230	Protein-L-isoaspartate O-	yes	N/A	0.574	0.908	0.350	1e-26
Q92047	228	Protein-L-isoaspartate(D-	yes	N/A	0.541	0.864	0.325	2e-22
Q43209	230	Protein-L-isoaspartate O-	N/A	N/A	0.513	0.813	0.341	3e-22
Q5F3N1	228	Protein-L-isoaspartate(D-	yes	N/A	0.541	0.864	0.320	5e-22
P22061	227	Protein-L-isoaspartate(D-	yes	N/A	0.541	0.867	0.310	8e-22
Q5RA89	227	Protein-L-isoaspartate(D-	yes	N/A	0.541	0.867	0.305	1e-21
Q4R5H0	227	Protein-L-isoaspartate(D-	N/A	N/A	0.541	0.867	0.305	1e-21
P23506	227	Protein-L-isoaspartate(D-	yes	N/A	0.541	0.867	0.310	3e-21
P80895	227	Protein-L-isoaspartate(D-	yes	N/A	0.541	0.867	0.305	4e-21
P22062	227	Protein-L-isoaspartate(D-	yes	N/A	0.541	0.867	0.310	9e-21

>sp|Q42539|PIMT_ARATH Protein-L-isoaspartate O-methyltransferase OS=Arabidopsis thaliana GN=PCM PE=2 SV=3

 Score =  120 bits (302), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/217 (35%), Positives = 112/217 (51%), Gaps = 8/217 (3%)

Query: 66  FLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCL 125
            +E L+   ++    V +A  AV R  F+  +    + D P +    V +  P   A CL
Sbjct: 16  MVENLQNHGIVTSDEVAKAMEAVDRGVFVTDRSS-AYVDSPMSIGYNVTISAPHMHAMCL 74

Query: 126 EQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPD 180
           + L  HL+ G RVLD+GSG GY+      +      ++    +PE + +S+KNI+ S   
Sbjct: 75  QLLEKHLKPGMRVLDVGSGTGYLTACFAVMVGTEGRAIGVEHIPELVASSVKNIEASAAS 134

Query: 181 -LLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNVWR 239
             L+  +L   + D R G AE  PYD I  GA   E+ + ++ QLKP GR+V PVGN++ 
Sbjct: 135 PFLKEGSLAVHVGDGRQGWAEFAPYDAIHVGAAAPEIPEALIDQLKPGGRLVIPVGNIF- 193

Query: 240 QNLSVIDKGPDGSISSKILRRVSSDFLCNLEYQLHPD 276
           Q+L V+DK  DGS+S K    V    L + E QL  D
Sbjct: 194 QDLQVVDKNSDGSVSIKDETSVRYVPLTSREAQLRGD 230

Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. This enzyme does not act on D-aspartyl residues.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 7EC: 7

>sp|Q92047|PIMT_DANRE Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Danio rerio GN=pcmt PE=2 SV=3

 Score =  107 bits (267), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 100/206 (48%), Gaps = 9/206 (4%)

Query: 62  SYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYI 121
           S+A+ +  L++  ++   RV E   A  R+ F    P   + D P +   Q  +  P   
Sbjct: 9   SHAELVNNLRKNGIIKSDRVYEVMLATDRSHFSRCNP---YMDSPQSIGYQATISAPHMH 65

Query: 122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATA-KEWLSSVRQLL----LPETLNNSLKNIKI 176
           A  LE L DHL  G++ LD+GSG G ++      +    +++    + E + +S+ N+K 
Sbjct: 66  AYALELLHDHLYEGAKALDVGSGSGILSVCFSRMVGPTGKVIGIDHIKELVEDSIANVKK 125

Query: 177 SRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGN 236
             P L+ S  ++ I+ D R G  E  PYD I  GA    V + +L QLKP GR++ PVG 
Sbjct: 126 DDPSLITSGRIKLIVGDGRMGFTEEAPYDAIHVGAAAPTVPQALLDQLKPGGRLILPVGP 185

Query: 237 V-WRQNLSVIDKGPDGSISSKILRRV 261
               Q L   DK  DGS   K L  V
Sbjct: 186 AGGNQMLEQYDKLEDGSTKMKPLMGV 211

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q43209|PIMT_WHEAT Protein-L-isoaspartate O-methyltransferase OS=Triticum aestivum GN=PCM PE=1 SV=1

 Score =  106 bits (265), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/199 (34%), Positives = 99/199 (49%), Gaps = 12/199 (6%)

Query: 66  FLEGLKERKLLNHPRVEEAFYAVRRADFI--NVKPKFGFCDIPYAFANQVVMEPPSYIAR 123
            +E LK+  ++   +V E    + RA F+     P   + D P        +  P   A 
Sbjct: 16  LVEYLKQYGVVRTDKVAEVMETIDRALFVPEGFTP---YTDSPMPIGYNATISAPHMHAT 72

Query: 124 CLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISR 178
           CLE L D+LQ G   LD+GSG GY+      +      +V    +PE +  S +N++ S 
Sbjct: 73  CLELLKDYLQPGMHALDVGSGSGYLTACFAMMVGPEGRAVGIEHIPELVVASTENVERSA 132

Query: 179 PD-LLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNV 237
              L++  +L F + D R G  +  PYD I  GA   E+ + +L QLKP GR+V PVG  
Sbjct: 133 AAALMKDGSLSFHVSDGRLGWPDAAPYDAIHVGAAAPEIPRPLLEQLKPGGRMVIPVGT- 191

Query: 238 WRQNLSVIDKGPDGSISSK 256
           + Q+L VIDK  DGS S +
Sbjct: 192 YSQDLQVIDKSADGSTSVR 210

Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. This enzyme does not act on D-aspartyl residues.

Triticum aestivum (taxid: 4565)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q5F3N1|PIMT_CHICK Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Gallus gallus GN=PCMT1 PE=2 SV=3

 Score =  105 bits (262), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 102/206 (49%), Gaps = 9/206 (4%)

Query: 62  SYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYI 121
           S+++ +  L++  ++   +V E   A  R  +    P   + D P +   Q  +  P   
Sbjct: 9   SHSELIHNLRKNGIIKSDKVFEVMLATDRCHYAKYNP---YMDSPQSIGFQATISAPHMH 65

Query: 122 ARCLEQLVDHLQNGSRVLDIGSGQGYM-ATAKEWLSSVRQLL----LPETLNNSLKNIKI 176
           A  LE L D L  G++ LD+GSG G + A     +    Q++    + E +++S+ N+K 
Sbjct: 66  AYALELLSDQLHEGAKALDVGSGSGILTACFSRMVGPKGQVVGIDHIKELVDDSINNVKK 125

Query: 177 SRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGN 236
             P LL S  ++ I+ D R G+AE  PYD I  GA    V + ++ QLKP GR++ PVG 
Sbjct: 126 DDPTLLSSGRVKLIVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGP 185

Query: 237 V-WRQNLSVIDKGPDGSISSKILRRV 261
               Q L   DK  DGS+  K L  V
Sbjct: 186 AGGNQMLEQYDKLEDGSVKMKPLMGV 211

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P22061|PIMT_HUMAN Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Homo sapiens GN=PCMT1 PE=1 SV=4

 Score =  105 bits (261), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 103/206 (50%), Gaps = 9/206 (4%)

Query: 62  SYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYI 121
           S+++ +  L++  ++   +V E   A  R+ +    P   + D P +   Q  +  P   
Sbjct: 9   SHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNP---YMDSPQSIGFQATISAPHMH 65

Query: 122 ARCLEQLVDHLQNGSRVLDIGSGQGYM-ATAKEWLSSVRQLL----LPETLNNSLKNIKI 176
           A  LE L D L  G++ LD+GSG G + A     +    +++    + E +++S+ N++ 
Sbjct: 66  AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK 125

Query: 177 SRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGN 236
             P LL S  ++ ++ D R G+AE  PYD I  GA    V + ++ QLKP GR++ PVG 
Sbjct: 126 DDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGP 185

Query: 237 V-WRQNLSVIDKGPDGSISSKILRRV 261
               Q L   DK  DGSI  K L  V
Sbjct: 186 AGGNQMLEQYDKLQDGSIKMKPLMGV 211

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q5RA89|PIMT_PONAB Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Pongo abelii GN=PCMT1 PE=2 SV=3

 Score =  104 bits (260), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 103/206 (50%), Gaps = 9/206 (4%)

Query: 62  SYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYI 121
           S+++ +  L++  ++   +V E   A  R+ +    P   + D P +   Q  +  P   
Sbjct: 9   SHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNP---YMDSPQSIGFQATISAPHMH 65

Query: 122 ARCLEQLVDHLQNGSRVLDIGSGQGYM-ATAKEWLSSVRQLL----LPETLNNSLKNIKI 176
           A  LE L D L  G++ LD+GSG G + A     +    +++    + E +++S+ N++ 
Sbjct: 66  AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINNVRK 125

Query: 177 SRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGN 236
             P LL S  ++ ++ D R G+AE  PYD I  GA    V + ++ QLKP GR++ PVG 
Sbjct: 126 DDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGP 185

Query: 237 V-WRQNLSVIDKGPDGSISSKILRRV 261
               Q L   DK  DGS+  K L  V
Sbjct: 186 AGGNQMLEQYDKLQDGSVKMKPLMGV 211

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q4R5H0|PIMT_MACFA Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Macaca fascicularis GN=PCMT1 PE=2 SV=3

 Score =  104 bits (260), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 103/206 (50%), Gaps = 9/206 (4%)

Query: 62  SYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYI 121
           S+++ +  L++  ++   +V E   A  R+ +    P   + D P +   Q  +  P   
Sbjct: 9   SHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAECNP---YMDSPQSIGFQATISAPHMH 65

Query: 122 ARCLEQLVDHLQNGSRVLDIGSGQGYM-ATAKEWLSSVRQLL----LPETLNNSLKNIKI 176
           A  LE L D L  G++ LD+GSG G + A     +    +++    + E +++S+ N++ 
Sbjct: 66  AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINNVRK 125

Query: 177 SRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGN 236
             P LL S  ++ ++ D R G+AE  PYD I  GA    V + ++ QLKP GR++ PVG 
Sbjct: 126 DDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGP 185

Query: 237 V-WRQNLSVIDKGPDGSISSKILRRV 261
               Q L   DK  DGS+  K L  V
Sbjct: 186 AGGNQMLEQYDKLQDGSVKMKPLMGV 211

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Macaca fascicularis (taxid: 9541)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P23506|PIMT_MOUSE Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Mus musculus GN=Pcmt1 PE=1 SV=3

 Score =  102 bits (255), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 103/206 (50%), Gaps = 9/206 (4%)

Query: 62  SYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYI 121
           S+++ +  L++  ++   +V E   A  R+ +    P   + D P +   Q  +  P   
Sbjct: 9   SHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKSNP---YMDSPQSIGFQATISAPHMH 65

Query: 122 ARCLEQLVDHLQNGSRVLDIGSGQGYM-ATAKEWLSSVRQLL----LPETLNNSLKNIKI 176
           A  LE L D L  G++ LD+GSG G + A     + +  +++    + E +++S+ N+K 
Sbjct: 66  AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGNSGKVIGIDHIKELVDDSITNVKK 125

Query: 177 SRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGN 236
             P LL S  +  ++ D R G+AE  PYD I  GA    V + ++ QLKP GR++ PVG 
Sbjct: 126 DDPMLLSSGRVRLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGP 185

Query: 237 V-WRQNLSVIDKGPDGSISSKILRRV 261
               Q L   DK  DGS+  K L  V
Sbjct: 186 AGGNQMLEQYDKLQDGSVKMKPLMGV 211

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P80895|PIMT_PIG Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Sus scrofa GN=PCMT1 PE=1 SV=3

 Score =  102 bits (254), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 103/206 (50%), Gaps = 9/206 (4%)

Query: 62  SYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYI 121
           S+++ +  L++  ++   +V E   A  R+ +    P   + D P +   Q  +  P   
Sbjct: 9   SHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNP---YMDSPQSIGFQATISAPHMH 65

Query: 122 ARCLEQLVDHLQNGSRVLDIGSGQGYM-ATAKEWLSSVRQLL----LPETLNNSLKNIKI 176
           A  LE L D L  G++ LD+GSG G + A     +    +++    + E +++S+ N++ 
Sbjct: 66  AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRK 125

Query: 177 SRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGN 236
             P LL S  ++ ++ D R G+AE  PYD I  GA    V + ++ QLKP GR++ PVG 
Sbjct: 126 DDPMLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGP 185

Query: 237 V-WRQNLSVIDKGPDGSISSKILRRV 261
               Q L   DK  DGS+  K L  V
Sbjct: 186 AGGNQMLEQYDKLQDGSVKMKPLMGV 211

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P22062|PIMT_RAT Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Rattus norvegicus GN=Pcmt1 PE=1 SV=2

 Score =  101 bits (251), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 101/206 (49%), Gaps = 9/206 (4%)

Query: 62  SYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYI 121
           S+++ +  L++  ++   +V E   A  R+ +    P   + D P +   Q  +  P   
Sbjct: 9   SHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKSNP---YMDSPQSIGFQATISAPHMH 65

Query: 122 ARCLEQLVDHLQNGSRVLDIGSGQGYM-ATAKEWLSSVRQLL----LPETLNNSLKNIKI 176
           A  LE L D L  G++ LD+GSG G + A     +    +++    + E +++S+ N+K 
Sbjct: 66  AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGHSGKVIGIDHIKELVDDSITNVKK 125

Query: 177 SRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGN 236
             P LL S  +  ++ D R G AE  PYD I  GA    V + ++ QLKP GR++ PVG 
Sbjct: 126 DDPMLLSSGRVRLVVGDGRMGFAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGP 185

Query: 237 V-WRQNLSVIDKGPDGSISSKILRRV 261
               Q L   DK  DGS+  K L  V
Sbjct: 186 AGGNQMLEQYDKLQDGSVKMKPLMGV 211

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	364
427781597	232	Putative protein-l-isoaspartated-asparta	0.527	0.827	0.338	1e-25
260830152	230	hypothetical protein BRAFLDRAFT_284774 [	0.549	0.869	0.339	2e-25
4678355	230	protein-L-isoaspartate(D-aspartate) O-me	0.574	0.908	0.350	3e-25
297819448	230	protein-l-isoaspartate O-methyltransfera	0.574	0.908	0.364	5e-25
449501340	311	PREDICTED: protein-L-isoaspartate O-meth	0.571	0.668	0.363	5e-25
449440610	241	PREDICTED: protein-L-isoaspartate O-meth	0.571	0.863	0.363	6e-25
186510791	230	protein-L-isoaspartate O-methyltransfera	0.574	0.908	0.350	8e-25
449440608	248	PREDICTED: protein-L-isoaspartate O-meth	0.571	0.838	0.363	1e-24
91081355	227	PREDICTED: similar to L-isoaspartyl prot	0.549	0.881	0.344	1e-24
452824064	313	protein-L-isoaspartate(D-aspartate) O-me	0.574	0.667	0.339	2e-24

>gi|427781597|gb|JAA56250.1| Putative protein-l-isoaspartated-aspartate o-methyltransferase [Rhipicephalus pulchellus]

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 105/201 (52%), Gaps = 9/201 (4%)

Query: 59  YTRSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPP 118
           + ++  D +  LK   ++   RVE+   +V R ++    P   + D P      V +  P
Sbjct: 6   HGKNNLDLVRNLKRNGIIRTQRVEDVMSSVDRGNYCPHNP---YMDSPQGIGYAVTISAP 62

Query: 119 SYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLL-----LPETLNNSLKN 173
              A+ LE L DHL+ G+R LD+GSG GY+      +     L      +PE +N S+ N
Sbjct: 63  HMHAQALESLKDHLKEGARALDVGSGSGYLTACMGLMVGETGLAVGIDHIPELVNESIAN 122

Query: 174 IKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233
           I+  +P LL+SK ++ I+ D R G+ E  PYD I  GA   ++ K ++ QLKP GR++ P
Sbjct: 123 IERDQPQLLKSKRVKMIVGDGREGYPEHAPYDAIHVGAAAPDMPKKLVEQLKPGGRLICP 182

Query: 234 VGNVW-RQNLSVIDKGPDGSI 253
           VG     Q L  +DK  DG++
Sbjct: 183 VGPAGASQTLEQVDKLEDGTV 203

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260830152|ref|XP_002610025.1| hypothetical protein BRAFLDRAFT_284774 [Branchiostoma floridae] gi|229295388|gb|EEN66035.1| hypothetical protein BRAFLDRAFT_284774 [Branchiostoma floridae]

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/209 (33%), Positives = 106/209 (50%), Gaps = 9/209 (4%)

Query: 59  YTRSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPP 118
           + ++ AD +  LK   ++   RV +A   V R ++    P   + D P +    V +  P
Sbjct: 6   HGKNNADLIRQLKNNGIIKTDRVFDAMKQVDRGNYCRFSP---YMDSPQSIGYGVTISAP 62

Query: 119 SYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKN 173
              A  LE L DHLQ GSR LD+GSG GY+      +      +V    + E +N S+ N
Sbjct: 63  HMHAHALEILKDHLQEGSRALDVGSGSGYLTACMALMVGPTGKAVGIDHIDELVNMSIAN 122

Query: 174 IKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233
           +    P LL++  ++ IL D R G  E  P+D I  GA   ++ + ++ QLKP GR++ P
Sbjct: 123 VNKEHPQLLKTGQMKLILGDGREGSPEDAPFDAIHVGAAAPQIPQALIDQLKPGGRLILP 182

Query: 234 VGNV-WRQNLSVIDKGPDGSISSKILRRV 261
           VG     QNL  +DK PDG++  K L  V
Sbjct: 183 VGPAGGNQNLEQVDKLPDGTVRKKNLMGV 211

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|4678355|emb|CAB41165.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Arabidopsis thaliana]

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/217 (35%), Positives = 113/217 (52%), Gaps = 8/217 (3%)

Query: 66  FLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCL 125
            +E L+   ++    V +A  AV R  F+  +    + D P +    V +  P   A CL
Sbjct: 16  MVENLQNHGIVTSDEVAKAMEAVDRGVFVTDRSS-AYVDSPMSIGYNVTISAPHMHAMCL 74

Query: 126 EQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPD 180
           + L  HL+ G RVLD+GSG GY+      +      ++    +PE + +S+KNI+ S   
Sbjct: 75  QLLEKHLKPGMRVLDVGSGTGYLTACFAVMVGTEGRAIGVEHIPELVASSVKNIEASAAS 134

Query: 181 -LLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNVWR 239
             L+ ++L   + D R G AE  PYD I  GA   E+ + ++ QLKP GR+V PVGN++ 
Sbjct: 135 PFLKERSLAVHVGDGRQGWAEFAPYDAIHVGAAAPEIPEALIDQLKPGGRLVIPVGNIF- 193

Query: 240 QNLSVIDKGPDGSISSKILRRVSSDFLCNLEYQLHPD 276
           Q+L V+DK  DGS+S K    V    L + E QL  D
Sbjct: 194 QDLQVVDKNSDGSVSIKDETSVRYVPLTSREAQLRGD 230

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819448|ref|XP_002877607.1| protein-l-isoaspartate O-methyltransferase [Arabidopsis lyrata subsp. lyrata] gi|297323445|gb|EFH53866.1| protein-l-isoaspartate O-methyltransferase [Arabidopsis lyrata subsp. lyrata]

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/217 (36%), Positives = 114/217 (52%), Gaps = 8/217 (3%)

Query: 66  FLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCL 125
            +E L+   ++    V +A  AV R  F+  +    + D P +    V +  P   A CL
Sbjct: 16  MVEKLQNHGIVTSDEVAKAMEAVDRGVFVPDRSS-AYVDCPMSIGYNVTISAPHMHAMCL 74

Query: 126 EQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQL---LLPETLNNSLKNIKISRPD 180
           + L  HL+ G RVLD+GSG GY+      +  S  R +    +PE + +S+KNI+ S   
Sbjct: 75  QLLEKHLKPGMRVLDVGSGTGYLTACFAVMVGSQGRAIGVEHIPELVASSVKNIEASAAS 134

Query: 181 -LLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNVWR 239
            LL+  +L   + D R G AE  PYD I  GA   E+ + ++ QLKP GR+V PVGN++ 
Sbjct: 135 PLLKEGSLAVHVGDGRQGWAEFAPYDAIHVGAAAPEIPEALIDQLKPGGRLVIPVGNIF- 193

Query: 240 QNLSVIDKGPDGSISSKILRRVSSDFLCNLEYQLHPD 276
           Q+L V+DK  DGS+S K    V    L + E QL  D
Sbjct: 194 QDLQVVDKNSDGSVSIKNETSVRYVPLTSREAQLRGD 230

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449501340|ref|XP_004161342.1| PREDICTED: protein-L-isoaspartate O-methyltransferase-like [Cucumis sativus]

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/220 (36%), Positives = 111/220 (50%), Gaps = 12/220 (5%)

Query: 65  DFLEGLKERKLLNHPRVEEAFYAVRRADFI--NVKPKFGFCDIPYAFANQVVMEPPSYIA 122
           D +E L+   ++   RV E   ++ RA F+  +V P   + D P        +  P   A
Sbjct: 96  DMVEKLQTYGVVRSKRVSEVMESIDRAFFVPDDVPP---YVDTPVPIGYNATISAPHMHA 152

Query: 123 RCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSS-----VRQLLLPETLNNSLKNIKIS 177
            CL+ L  HLQ G R LD+GSG GY+      +       V    +PE + +S++NIK S
Sbjct: 153 TCLQLLEKHLQPGMRALDVGSGTGYLTACFALMVGPEGRVVGVEHIPELVASSMENIKKS 212

Query: 178 RPD-LLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGN 236
               LL+  +L   + D R G AE  PYD I  GA   E+   ++ QLKP GR+V PVGN
Sbjct: 213 AAAPLLKEGSLSLHVGDGRQGWAECAPYDAIHVGAAAAEIPPALIDQLKPGGRMVIPVGN 272

Query: 237 VWRQNLSVIDKGPDGSISSKILRRVSSDFLCNLEYQLHPD 276
           V+ Q+L V+DK  DGS+S      V    L + E QL  D
Sbjct: 273 VF-QDLKVVDKDSDGSVSIHDETSVRYVPLTSREAQLRDD 311

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440610|ref|XP_004138077.1| PREDICTED: protein-L-isoaspartate O-methyltransferase-like isoform 2 [Cucumis sativus]

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/220 (36%), Positives = 111/220 (50%), Gaps = 12/220 (5%)

Query: 65  DFLEGLKERKLLNHPRVEEAFYAVRRADFI--NVKPKFGFCDIPYAFANQVVMEPPSYIA 122
           D +E L+   ++   RV E   ++ RA F+  +V P   + D P        +  P   A
Sbjct: 26  DMVEKLQTYGVVRSKRVSEVMESIDRAFFVPDDVPP---YVDTPVPIGYNATISAPHMHA 82

Query: 123 RCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSS-----VRQLLLPETLNNSLKNIKIS 177
            CL+ L  HLQ G R LD+GSG GY+      +       V    +PE + +S++NIK S
Sbjct: 83  TCLQLLEKHLQPGMRALDVGSGTGYLTACFALMVGPEGRVVGVEHIPELVASSMENIKKS 142

Query: 178 RPD-LLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGN 236
               LL+  +L   + D R G AE  PYD I  GA   E+   ++ QLKP GR+V PVGN
Sbjct: 143 AAAPLLKEGSLSLHVGDGRQGWAECAPYDAIHVGAAAAEIPPALIDQLKPGGRMVIPVGN 202

Query: 237 VWRQNLSVIDKGPDGSISSKILRRVSSDFLCNLEYQLHPD 276
           V+ Q+L V+DK  DGS+S      V    L + E QL  D
Sbjct: 203 VF-QDLKVVDKDSDGSVSIHDETSVRYVPLTSREAQLRDD 241

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186510791|ref|NP_851013.2| protein-L-isoaspartate O-methyltransferase [Arabidopsis thaliana] gi|186510793|ref|NP_680112.2| protein-L-isoaspartate O-methyltransferase [Arabidopsis thaliana] gi|166899091|sp|Q42539.3|PIMT_ARATH RecName: Full=Protein-L-isoaspartate O-methyltransferase; Short=PIMT; AltName: Full=L-isoaspartyl protein carboxyl methyltransferase; AltName: Full=Protein L-isoaspartyl methyltransferase; AltName: Full=Protein-beta-aspartate methyltransferase gi|1322021|gb|AAC49279.1| L-isoaspartyl methyltransferase [Arabidopsis thaliana] gi|117168207|gb|ABK32186.1| At3g48330 [Arabidopsis thaliana] gi|332644880|gb|AEE78401.1| protein-L-isoaspartate O-methyltransferase [Arabidopsis thaliana] gi|332644881|gb|AEE78402.1| protein-L-isoaspartate O-methyltransferase [Arabidopsis thaliana]

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 76/217 (35%), Positives = 112/217 (51%), Gaps = 8/217 (3%)

Query: 66  FLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCL 125
            +E L+   ++    V +A  AV R  F+  +    + D P +    V +  P   A CL
Sbjct: 16  MVENLQNHGIVTSDEVAKAMEAVDRGVFVTDRSS-AYVDSPMSIGYNVTISAPHMHAMCL 74

Query: 126 EQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPD 180
           + L  HL+ G RVLD+GSG GY+      +      ++    +PE + +S+KNI+ S   
Sbjct: 75  QLLEKHLKPGMRVLDVGSGTGYLTACFAVMVGTEGRAIGVEHIPELVASSVKNIEASAAS 134

Query: 181 -LLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNVWR 239
             L+  +L   + D R G AE  PYD I  GA   E+ + ++ QLKP GR+V PVGN++ 
Sbjct: 135 PFLKEGSLAVHVGDGRQGWAEFAPYDAIHVGAAAPEIPEALIDQLKPGGRLVIPVGNIF- 193

Query: 240 QNLSVIDKGPDGSISSKILRRVSSDFLCNLEYQLHPD 276
           Q+L V+DK  DGS+S K    V    L + E QL  D
Sbjct: 194 QDLQVVDKNSDGSVSIKDETSVRYVPLTSREAQLRGD 230

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440608|ref|XP_004138076.1| PREDICTED: protein-L-isoaspartate O-methyltransferase-like isoform 1 [Cucumis sativus]

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/220 (36%), Positives = 111/220 (50%), Gaps = 12/220 (5%)

Query: 65  DFLEGLKERKLLNHPRVEEAFYAVRRADFI--NVKPKFGFCDIPYAFANQVVMEPPSYIA 122
           D +E L+   ++   RV E   ++ RA F+  +V P   + D P        +  P   A
Sbjct: 33  DMVEKLQTYGVVRSKRVSEVMESIDRAFFVPDDVPP---YVDTPVPIGYNATISAPHMHA 89

Query: 123 RCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSS-----VRQLLLPETLNNSLKNIKIS 177
            CL+ L  HLQ G R LD+GSG GY+      +       V    +PE + +S++NIK S
Sbjct: 90  TCLQLLEKHLQPGMRALDVGSGTGYLTACFALMVGPEGRVVGVEHIPELVASSMENIKKS 149

Query: 178 RPD-LLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGN 236
               LL+  +L   + D R G AE  PYD I  GA   E+   ++ QLKP GR+V PVGN
Sbjct: 150 AAAPLLKEGSLSLHVGDGRQGWAECAPYDAIHVGAAAAEIPPALIDQLKPGGRMVIPVGN 209

Query: 237 VWRQNLSVIDKGPDGSISSKILRRVSSDFLCNLEYQLHPD 276
           V+ Q+L V+DK  DGS+S      V    L + E QL  D
Sbjct: 210 VF-QDLKVVDKDSDGSVSIHDETSVRYVPLTSREAQLRDD 248

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|91081355|ref|XP_971086.1| PREDICTED: similar to L-isoaspartyl protein carboxyl methyltransferase [Tribolium castaneum] gi|270005191|gb|EFA01639.1| hypothetical protein TcasGA2_TC007209 [Tribolium castaneum]

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 106/209 (50%), Gaps = 9/209 (4%)

Query: 59  YTRSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPP 118
           + ++ A+ +  L+   ++    VE A  +V R ++    P   + D P      V +  P
Sbjct: 6   HGKTNAELIRNLRANGIIRSDAVESAMLSVDRGNYSRNNP---YMDAPQGIGYGVTISAP 62

Query: 119 SYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLL-----LPETLNNSLKN 173
              A  LE L D L NG+R LD+GSG GY+      +   + +      +PE +  S+KN
Sbjct: 63  HMHAHALELLKDKLLNGNRALDVGSGSGYLTACMAIMLGEKGIAVGIDHMPELVEMSIKN 122

Query: 174 IKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP 233
           I+  +P+LLQS  L  +L D R G+ + GPYD I  GA    + + ++ QLK  GR++ P
Sbjct: 123 IERDQPELLQSGQLRLLLGDGRQGYPDLGPYDAIHVGAAAPTLPQPLVDQLKVGGRLIIP 182

Query: 234 VGNV-WRQNLSVIDKGPDGSISSKILRRV 261
           VG     Q L  IDK PDGSI  K L  V
Sbjct: 183 VGPAGGDQQLEQIDKLPDGSIQRKSLMGV 211

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|452824064|gb|EME31069.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Galdieria sulphuraria]

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 108/218 (49%), Gaps = 9/218 (4%)

Query: 61  RSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSY 120
           R+ A+ ++ LKE  L+   RVE    AV R  F   +P   + D P        +  P  
Sbjct: 97  RNQAELVKALKENGLIKTERVERTLLAVDRGHFCKYRP---YEDAPQPIGWNATISAPHM 153

Query: 121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLL-----LPETLNNSLKNIK 175
              CLE L +HL+ GS+ LDIGSG GY+      +   + L+     +P     SL+NI+
Sbjct: 154 HVTCLELLNEHLKPGSKALDIGSGSGYLTACMGIMVRPKGLVVGIEHIPGLAQQSLENIE 213

Query: 176 ISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVG 235
            S+  LL+   +  ++ D R G  EG P+D I  GA    V + +L QL P GR++ P G
Sbjct: 214 RSQKSLLEEGVVRVMVDDGRKGFLEGAPFDAIHVGAAAGTVPRVLLDQLAPGGRMLIPEG 273

Query: 236 NVWRQNLSVIDKGPDGSISSKILRRVSSDFLCNLEYQL 273
               Q L   DK  DG++S K +  V    LC+L+ Q+
Sbjct: 274 TS-EQELVQYDKAKDGTVSKKHITFVRYVPLCSLDQQI 310

Source: Galdieria sulphuraria

Species: Galdieria sulphuraria

Genus: Galdieria

Family: Cyanidiaceae

Order: Cyanidiales

Class: Bangiophyceae

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	364
TAIR|locus:504955645	230	PIMT1 "protein-l-isoaspartate	0.571	0.904	0.356	1.5e-26
ZFIN|ZDB-GENE-990415-134	266	pcmt "l-isoaspartyl protein ca	0.541	0.740	0.325	1.1e-23
UNIPROTKB|Q5F3N1	228	PCMT1 "Protein-L-isoaspartate(	0.541	0.864	0.320	2.9e-23
UNIPROTKB|E2R3G3	286	PCMT1 "Protein-L-isoaspartate	0.541	0.688	0.310	6.1e-23
UNIPROTKB|H7BY58	286	PCMT1 "Protein-L-isoaspartate	0.541	0.688	0.310	7.8e-23
UNIPROTKB|J3KP72	285	PCMT1 "Protein-L-isoaspartate	0.541	0.691	0.310	7.8e-23
UNIPROTKB|P22061	227	PCMT1 "Protein-L-isoaspartate(	0.541	0.867	0.310	7.8e-23
TAIR|locus:2157767	309	PIMT2 "protein-l-isoaspartate	0.508	0.598	0.347	1.3e-22
MGI|MGI:97502	227	Pcmt1 "protein-L-isoaspartate	0.541	0.867	0.310	1.6e-22
UNIPROTKB|P80895	227	PCMT1 "Protein-L-isoaspartate(	0.541	0.867	0.305	2.1e-22

TAIR|locus:504955645 PIMT1 "protein-l-isoaspartate methyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 77/216 (35%), Positives = 114/216 (52%)

Query:    67 LEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCLE 126
             +E L+   ++    V +A  AV R  F+  +    + D P +    V +  P   A CL+
Sbjct:    17 VENLQNHGIVTSDEVAKAMEAVDRGVFVTDRSS-AYVDSPMSIGYNVTISAPHMHAMCLQ 75

Query:   127 QLVDHLQNGSRVLDIGSGQGYM-ATAKEWLSSVRQLL----LPETLNNSLKNIKISRPD- 180
              L  HL+ G RVLD+GSG GY+ A     + +  + +    +PE + +S+KNI+ S    
Sbjct:    76 LLEKHLKPGMRVLDVGSGTGYLTACFAVMVGTEGRAIGVEHIPELVASSVKNIEASAASP 135

Query:   181 LLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNVWRQ 240
              L+  +L   + D R G AE  PYD I  GA   E+ + ++ QLKP GR+V PVGN++ Q
Sbjct:   136 FLKEGSLAVHVGDGRQGWAEFAPYDAIHVGAAAPEIPEALIDQLKPGGRLVIPVGNIF-Q 194

Query:   241 NLSVIDKGPDGSISSKILRRVSSDFLCNLEYQLHPD 276
             +L V+DK  DGS+S K    V    L + E QL  D
Sbjct:   195 DLQVVDKNSDGSVSIKDETSVRYVPLTSREAQLRGD 230

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006464 "cellular protein modification process" evidence=IEA;ISS

GO:0007568 "aging" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009845 "seed germination" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

ZFIN|ZDB-GENE-990415-134 pcmt "l-isoaspartyl protein carboxyl methyltransferase" [Danio rerio (taxid:7955)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 67/206 (32%), Positives = 100/206 (48%)

Query:    62 SYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYI 121
             S+A+ +  L++  ++   RV E   A  R+ F    P   + D P +   Q  +  P   
Sbjct:    47 SHAELVNNLRKNGIIKSDRVYEVMLATDRSHFSRCNP---YMDSPQSIGYQATISAPHMH 103

Query:   122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATA-KEWLSSVRQLL----LPETLNNSLKNIKI 176
             A  LE L DHL  G++ LD+GSG G ++      +    +++    + E + +S+ N+K 
Sbjct:   104 AYALELLHDHLYEGAKALDVGSGSGILSVCFSRMVGPTGKVIGIDHIKELVEDSIANVKK 163

Query:   177 SRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGN 236
               P L+ S  ++ I+ D R G  E  PYD I  GA    V + +L QLKP GR++ PVG 
Sbjct:   164 DDPSLITSGRIKLIVGDGRMGFTEEAPYDAIHVGAAAPTVPQALLDQLKPGGRLILPVGP 223

Query:   237 VW-RQNLSVIDKGPDGSISSKILRRV 261
                 Q L   DK  DGS   K L  V
Sbjct:   224 AGGNQMLEQYDKLEDGSTKMKPLMGV 249

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|Q5F3N1 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Gallus gallus (taxid:9031)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 66/206 (32%), Positives = 102/206 (49%)

Query:    62 SYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYI 121
             S+++ +  L++  ++   +V E   A  R  +    P   + D P +   Q  +  P   
Sbjct:     9 SHSELIHNLRKNGIIKSDKVFEVMLATDRCHYAKYNP---YMDSPQSIGFQATISAPHMH 65

Query:   122 ARCLEQLVDHLQNGSRVLDIGSGQGYM-ATAKEWLSSVRQLL----LPETLNNSLKNIKI 176
             A  LE L D L  G++ LD+GSG G + A     +    Q++    + E +++S+ N+K 
Sbjct:    66 AYALELLSDQLHEGAKALDVGSGSGILTACFSRMVGPKGQVVGIDHIKELVDDSINNVKK 125

Query:   177 SRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGN 236
               P LL S  ++ I+ D R G+AE  PYD I  GA    V + ++ QLKP GR++ PVG 
Sbjct:   126 DDPTLLSSGRVKLIVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGP 185

Query:   237 VW-RQNLSVIDKGPDGSISSKILRRV 261
                 Q L   DK  DGS+  K L  V
Sbjct:   186 AGGNQMLEQYDKLEDGSVKMKPLMGV 211

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E2R3G3 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Canis lupus familiaris (taxid:9615)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 64/206 (31%), Positives = 104/206 (50%)

Query:    62 SYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYI 121
             S+++ +  L++  ++   +V E   A  R+ +    P   + D P +   Q  +  P   
Sbjct:    67 SHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNP---YMDSPQSIGFQATISAPHMH 123

Query:   122 ARCLEQLVDHLQNGSRVLDIGSGQGYM-ATAKEWLSSVRQLL----LPETLNNSLKNIKI 176
             A  LE L D L  G++ LD+GSG G + A     + S  +++    + E +++S+ N++ 
Sbjct:   124 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGSSGKVIGIDHIKELVDDSINNVRK 183

Query:   177 SRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGN 236
               P LL S  ++ ++ D R G+AE  PYD I  GA    V + ++ QLKP GR++ PVG 
Sbjct:   184 DDPVLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGP 243

Query:   237 VW-RQNLSVIDKGPDGSISSKILRRV 261
                 Q L   DK  DGS+  K L  V
Sbjct:   244 AGGNQMLEQYDKLQDGSVKMKPLMGV 269

GO:0005737 "cytoplasm" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

UNIPROTKB|H7BY58 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 64/206 (31%), Positives = 103/206 (50%)

Query:    62 SYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYI 121
             S+++ +  L++  ++   +V E   A  R+ +    P   + D P +   Q  +  P   
Sbjct:    67 SHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNP---YMDSPQSIGFQATISAPHMH 123

Query:   122 ARCLEQLVDHLQNGSRVLDIGSGQGYM-ATAKEWLSSVRQLL----LPETLNNSLKNIKI 176
             A  LE L D L  G++ LD+GSG G + A     +    +++    + E +++S+ N++ 
Sbjct:   124 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK 183

Query:   177 SRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGN 236
               P LL S  ++ ++ D R G+AE  PYD I  GA    V + ++ QLKP GR++ PVG 
Sbjct:   184 DDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGP 243

Query:   237 VW-RQNLSVIDKGPDGSISSKILRRV 261
                 Q L   DK  DGSI  K L  V
Sbjct:   244 AGGNQMLEQYDKLQDGSIKMKPLMGV 269

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|J3KP72 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 64/206 (31%), Positives = 103/206 (50%)

Query:    62 SYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYI 121
             S+++ +  L++  ++   +V E   A  R+ +    P   + D P +   Q  +  P   
Sbjct:    67 SHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNP---YMDSPQSIGFQATISAPHMH 123

Query:   122 ARCLEQLVDHLQNGSRVLDIGSGQGYM-ATAKEWLSSVRQLL----LPETLNNSLKNIKI 176
             A  LE L D L  G++ LD+GSG G + A     +    +++    + E +++S+ N++ 
Sbjct:   124 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK 183

Query:   177 SRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGN 236
               P LL S  ++ ++ D R G+AE  PYD I  GA    V + ++ QLKP GR++ PVG 
Sbjct:   184 DDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGP 243

Query:   237 VW-RQNLSVIDKGPDGSISSKILRRV 261
                 Q L   DK  DGSI  K L  V
Sbjct:   244 AGGNQMLEQYDKLQDGSIKMKPLMGV 269

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0046498 "S-adenosylhomocysteine metabolic process" evidence=IEA

GO:0046500 "S-adenosylmethionine metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|P22061 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 64/206 (31%), Positives = 103/206 (50%)

Query:    62 SYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYI 121
             S+++ +  L++  ++   +V E   A  R+ +    P   + D P +   Q  +  P   
Sbjct:     9 SHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNP---YMDSPQSIGFQATISAPHMH 65

Query:   122 ARCLEQLVDHLQNGSRVLDIGSGQGYM-ATAKEWLSSVRQLL----LPETLNNSLKNIKI 176
             A  LE L D L  G++ LD+GSG G + A     +    +++    + E +++S+ N++ 
Sbjct:    66 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK 125

Query:   177 SRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGN 236
               P LL S  ++ ++ D R G+AE  PYD I  GA    V + ++ QLKP GR++ PVG 
Sbjct:   126 DDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGP 185

Query:   237 VW-RQNLSVIDKGPDGSISSKILRRV 261
                 Q L   DK  DGSI  K L  V
Sbjct:   186 AGGNQMLEQYDKLQDGSIKMKPLMGV 211

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=TAS

GO:0030091 "protein repair" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0006479 "protein methylation" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2157767 PIMT2 "protein-l-isoaspartate methyltransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 67/193 (34%), Positives = 96/193 (49%)

Query:    67 LEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCLE 126
             +E LK   +++  RV +   A+ R  F+ V     + D P        +  P   A CL+
Sbjct:    96 VENLKRYGVISSKRVAQVMEALDRGLFVPVGSS-AYVDTPVPIGYNATISAPHMHATCLQ 154

Query:   127 QLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLL-----LPETLNNSLKNIKIS-RPD 180
              L D L  G R LD+GSG GY+      +      +     +PE ++ S+KNI+ S    
Sbjct:   155 LLEDKLHPGMRALDVGSGTGYLTGCFALMVGAEGRVVGVDHIPELVDMSIKNIEKSVAAS 214

Query:   181 LLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNVWRQ 240
              L+  +L   + D R G  E  PYD I  GA  +E+ + +L QLKP GR+V P+G  + Q
Sbjct:   215 FLKKGSLSLHVGDGRKGWQEFAPYDAIHVGAAASEIPQPLLDQLKPGGRMVIPLGTYF-Q 273

Query:   241 NLSVIDKGPDGSI 253
              L VIDK  DGSI
Sbjct:   274 ELKVIDKNEDGSI 286

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA;ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006464 "cellular protein modification process" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=IDA

MGI|MGI:97502 Pcmt1 "protein-L-isoaspartate (D-aspartate) O-methyltransferase 1" [Mus musculus (taxid:10090)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 64/206 (31%), Positives = 103/206 (50%)

Query:    62 SYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYI 121
             S+++ +  L++  ++   +V E   A  R+ +    P   + D P +   Q  +  P   
Sbjct:     9 SHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKSNP---YMDSPQSIGFQATISAPHMH 65

Query:   122 ARCLEQLVDHLQNGSRVLDIGSGQGYM-ATAKEWLSSVRQLL----LPETLNNSLKNIKI 176
             A  LE L D L  G++ LD+GSG G + A     + +  +++    + E +++S+ N+K 
Sbjct:    66 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGNSGKVIGIDHIKELVDDSITNVKK 125

Query:   177 SRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGN 236
               P LL S  +  ++ D R G+AE  PYD I  GA    V + ++ QLKP GR++ PVG 
Sbjct:   126 DDPMLLSSGRVRLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGP 185

Query:   237 VW-RQNLSVIDKGPDGSISSKILRRV 261
                 Q L   DK  DGS+  K L  V
Sbjct:   186 AGGNQMLEQYDKLQDGSVKMKPLMGV 211

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0006479 "protein methylation" evidence=IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0046498 "S-adenosylhomocysteine metabolic process" evidence=ISO

GO:0046500 "S-adenosylmethionine metabolic process" evidence=ISO

UNIPROTKB|P80895 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Sus scrofa (taxid:9823)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 63/206 (30%), Positives = 103/206 (50%)

Query:    62 SYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYI 121
             S+++ +  L++  ++   +V E   A  R+ +    P   + D P +   Q  +  P   
Sbjct:     9 SHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNP---YMDSPQSIGFQATISAPHMH 65

Query:   122 ARCLEQLVDHLQNGSRVLDIGSGQGYM-ATAKEWLSSVRQLL----LPETLNNSLKNIKI 176
             A  LE L D L  G++ LD+GSG G + A     +    +++    + E +++S+ N++ 
Sbjct:    66 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRK 125

Query:   177 SRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGN 236
               P LL S  ++ ++ D R G+AE  PYD I  GA    V + ++ QLKP GR++ PVG 
Sbjct:   126 DDPMLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGP 185

Query:   237 VW-RQNLSVIDKGPDGSISSKILRRV 261
                 Q L   DK  DGS+  K L  V
Sbjct:   186 AGGNQMLEQYDKLQDGSVKMKPLMGV 211

GO:0005737 "cytoplasm" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9GPS6	PIMT_DICDI	2, ., 1, ., 1, ., 7, 7	0.3004	0.6098	0.7025	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691
4th Layer	2.1.1.77	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	364
pfam01135	210	pfam01135, PCMT, Protein-L-isoaspartate(D-aspartat	2e-28
COG2518	209	COG2518, Pcm, Protein-L-isoaspartate carboxylmethy	4e-23
PRK00312	212	PRK00312, pcm, protein-L-isoaspartate O-methyltran	8e-17
TIGR00080	215	TIGR00080, pimt, protein-L-isoaspartate(D-aspartat	2e-15
PRK13942	212	PRK13942, PRK13942, protein-L-isoaspartate O-methy	2e-13
TIGR04364	394	TIGR04364, methyltran_FxLD, methyltransferase, FxL	2e-12
PRK13943	322	PRK13943, PRK13943, protein-L-isoaspartate O-methy	1e-11
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	1e-08
PRK13944	205	PRK13944, PRK13944, protein-L-isoaspartate O-methy	7e-06
TIGR04188	363	TIGR04188, methyltr_grsp, methyltransferase, ATP-g	2e-05

>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)

 Score =  109 bits (275), Expect = 2e-28
 Identities = 65/209 (31%), Positives = 95/209 (45%), Gaps = 17/209 (8%)

Query: 61  RSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPK-FGFCDIPYAFANQVVMEPPS 119
                 +E LK   ++   +V EA  AV R +F+    K + + DIP +      +  P 
Sbjct: 1   NRNEALIENLKNYGVIASDKVAEAMLAVDREEFVPESFKSYAYEDIPLSIGYGQTISAPH 60

Query: 120 YIARCLEQLVDHLQNGSRVLDIGSGQGY-------MATAKEWLSSVRQLLLPETLNNSLK 172
             A  LE L   L+ G RVL+IGSG GY       M      + S+  +  PE +  + +
Sbjct: 61  MHAMMLELL--ELKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHI--PELVEIARR 116

Query: 173 NIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVA 232
           N++    + +       ++ D R G  E  PYD I  GA   E+ + ++ QLK  GR+V 
Sbjct: 117 NLEKLGLENVI-----VVVGDGRQGWPEFAPYDAIHVGAAAPEIPEALIDQLKEGGRLVI 171

Query: 233 PVGNVWRQNLSVIDKGPDGSISSKILRRV 261
           PVG    Q L   DK  DGS+  K L  V
Sbjct: 172 PVGPNGNQVLQQFDKRNDGSVVIKDLEGV 200

Length = 210

>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 95.0 bits (237), Expect = 4e-23
 Identities = 61/198 (30%), Positives = 90/198 (45%), Gaps = 15/198 (7%)

Query: 66  FLEGLKERKLLNHPRVEEAFYAVRRADFINVKPK-FGFCDIPYAFANQVVMEPPSYIARC 124
            +E L+   + +  RV +AF AV R  F+    K   + D          +  P  +AR 
Sbjct: 6   LVERLRTEGITD-ERVLKAFLAVPRELFVPAAYKHLAYEDRALPIGCGQTISAPHMVARM 64

Query: 125 LEQLVDHLQNGSRVLDIGSGQGYMA--TAK--EWLSSVRQLLLPETLNNSLKNIKISRPD 180
           L+ L   L+ G RVL+IG+G GY A   A+    + S+    + E    + +N++     
Sbjct: 65  LQLL--ELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIE--RIEELAEQARRNLE----- 115

Query: 181 LLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNVWRQ 240
            L  + +     D   G  E  PYD I   A   EV + +L QLKP GR+V PVG+   Q
Sbjct: 116 TLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVGSGPAQ 175

Query: 241 NLSVIDKGPDGSISSKIL 258
            L  I K  DG+   + L
Sbjct: 176 RLLRITKDGDGNFERRDL 193

Length = 209

>gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase; Reviewed

 Score = 77.9 bits (193), Expect = 8e-17
 Identities = 53/207 (25%), Positives = 76/207 (36%), Gaps = 57/207 (27%)

Query: 78  HPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQV------------VMEPPSYIARCL 125
             RV EA  A  R  F+           P AF ++              +  P  +AR  
Sbjct: 23  DERVLEAIEATPRELFV-----------PEAFKHKAYENRALPIGCGQTISQPYMVARMT 71

Query: 126 EQLVDHLQNGSRVLDIGSGQGYMATA--------------KEWLSSVRQLLLPETLNNSL 171
           E L   L+ G RVL+IG+G GY A                K      ++ L  + L   L
Sbjct: 72  ELL--ELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRL--KQLG--L 125

Query: 172 KNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIV 231
            N+ +                D   G     P+D I   A   E+ + +L QLK  G +V
Sbjct: 126 HNVSV-------------RHGDGWKGWPAYAPFDRILVTAAAPEIPRALLEQLKEGGILV 172

Query: 232 APVGNVWRQNLSVIDKGPDGSISSKIL 258
           APVG   +Q L+ + K   G    ++L
Sbjct: 173 APVGGEEQQLLTRVRKR-GGRFEREVL 198

Length = 212

>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate) O-methyltransferase

 Score = 74.1 bits (182), Expect = 2e-15
 Identities = 51/201 (25%), Positives = 85/201 (42%), Gaps = 15/201 (7%)

Query: 67  LEGLKERKLLNHPRVEEAFYAVRRADFINVKPK-FGFCDIPYAFANQVVMEPPSYIARCL 125
           ++ L     +   RV +A  +V R +F+    K + + D P        +  P  +A   
Sbjct: 11  IDKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMT 70

Query: 126 EQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLL-----LPETLNNSLKNIKISRPD 180
           E L   L+ G +VL+IG+G GY A     +     L+     +PE    + + ++     
Sbjct: 71  ELL--ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK---- 124

Query: 181 LLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNVWRQ 240
            L    +  I+ D   G     PYD I+  A   ++ + ++ QLK  G +V PVG  + Q
Sbjct: 125 -LGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAGPKIPEALIDQLKEGGILVMPVGE-YLQ 182

Query: 241 NLSVIDKGPDGSISSKILRRV 261
            L   +K   G I  K +  V
Sbjct: 183 VLKRAEK-RGGEIIIKDVEPV 202

This is an all-kingdom (but not all species) full-length ortholog enzyme for repairing aging proteins. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt [Protein fate, Protein modification and repair]. Length = 215

>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 21/205 (10%)

Query: 67  LEGLKERKLLNHPRVEEAFYAVRRADFINVKPK----FGFCDIPYAFANQVVMEPPSYIA 122
           +E L     +   +V +A   V R  F+   P+    + + D P        +     +A
Sbjct: 10  IEELIREGYIKSKKVIDALLKVPRHLFV---PEYLEEYAYVDTPLEIGYGQTISAIHMVA 66

Query: 123 RCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLL-----LPETLNNSLKNIKIS 177
              E L   L+ G +VL+IG+G GY A     +      +     +PE    + K +K  
Sbjct: 67  IMCELL--DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLK-- 122

Query: 178 RPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNV 237
               L    +E I+ D   G+ E  PYD I+  A   ++ K ++ QLK  G +V PVG+ 
Sbjct: 123 ---KLGYDNVEVIVGDGTLGYEENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIPVGS- 178

Query: 238 WRQNLSVIDKGPDGSISSKILRRVS 262
           + Q L  ++K   G I  K L  V+
Sbjct: 179 YSQELIRVEKDN-GKIIKKKLGEVA 202

Length = 212

>gnl|CDD|234563 TIGR04364, methyltran_FxLD, methyltransferase, FxLD system

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 56/189 (29%), Positives = 74/189 (39%), Gaps = 43/189 (22%)

Query: 70  LKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVV------------MEP 117
           L+E  ++  PRVE AF  V R  F    P     +  YA    VV            +  
Sbjct: 12  LREDGVIRSPRVEAAFRTVPRHLFAPGAP----LEKAYAANRAVVTKRDEDGAALSSVSA 67

Query: 118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNS--LKNIK 175
           P   A  LEQ    ++ G RVL+IGSG GY A            LL E +  S  +  + 
Sbjct: 68  PHIQAMMLEQA--GVEPGMRVLEIGSG-GYNAA-----------LLAELVGPSGEVTTVD 113

Query: 176 ISRPDLLQS----------KTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLK 225
           I   D+               +  +L DA  G  E  PYD I    G  ++    L QL 
Sbjct: 114 ID-EDVTDRARACLAAAGYPQVTVVLADAEAGVPELAPYDRIIVTVGAWDIPPAWLDQLA 172

Query: 226 PNGRIVAPV 234
           P GR+V P+
Sbjct: 173 PGGRLVVPL 181

Members of this family resemble occur regularly in the vicinity of lantibiotic biosynthesis enzymes and their probable target, the FxLD family of putative ribosomal natural product precursor (TIGR04363). Members resemble protein-L-isoaspartate O-methyltransferase (TIGR00080) and a predicted methyltranserase, TIGR04188, of another putative peptide modification system. Length = 394

>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 64.5 bits (157), Expect = 1e-11
 Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 24/181 (13%)

Query: 80  RVEEAFYAVRRADFINVK--PKFGFCDI---------PYAFANQVVMEPPSYIARCLEQL 128
            + +AF  V R +F+       + + DI          Y+ ++Q     PS +A  +E  
Sbjct: 22  HIAKAFLEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQ-----PSLMALFME-- 74

Query: 129 VDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKISRPDLLQSKTLE 188
              L  G RVL+IG G GY A     +   + L++    +  +  I       L  + + 
Sbjct: 75  WVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVI 134

Query: 189 FILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNVWRQNLSVIDKG 248
           F+  D  +G  E  PYDVIF   G  EV +T  +QLK  GR++ P+      NL +  + 
Sbjct: 135 FVCGDGYYGVPEFAPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPI------NLKLSRRQ 188

Query: 249 P 249
           P
Sbjct: 189 P 189

Length = 322

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 16/107 (14%)

Query: 135 GSRVLDIGSGQGYMATAKEWLSSVRQLLL------PETLNNSLKNIKISRPDLLQSKTLE 188
           G+RVLDIG G G +  A E         +      PE L  + +N K     L     + 
Sbjct: 2   GARVLDIGCGTGSL--AIELARLFPGARVTGVDLSPEMLELARENAK-----LALGPRIT 54

Query: 189 FILKDARWGHAEGGPYDVIFFGAGT---TEVSKTILSQLKPNGRIVA 232
           F+  DA         +D +F G G     E+   + S LKP GR+V 
Sbjct: 55  FVQGDAPDALDLLEGFDAVFIGGGGGDLLELLDALASLLKPGGRLVL 101

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 46.0 bits (109), Expect = 7e-06
 Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 18/194 (9%)

Query: 67  LEGLKERKLLNHPRVEEAFYAVRRADFINVKPKF---GFCDIPYA-FANQVVMEPPSYIA 122
           +E L    ++   RV++A  +V R +F  V P++    + D P   FA   +  P     
Sbjct: 6   VEELVREGIIKSERVKKAMLSVPREEF--VMPEYRMMAYEDRPLPLFAGATISAPHMVAM 63

Query: 123 RCLEQLVDHLQNGSRVLDIGSGQGYMAT----AKEWLSSVRQL-LLPETLNNSLKNIKIS 177
            C  +L++  + G ++L++G+G GY A     A E    V  + ++ E    + +NI+  
Sbjct: 64  MC--ELIEP-RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIE-- 118

Query: 178 RPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNV 237
              L     +E    D + G  +  P+D I   A  + +   ++ QLK  G +V PV   
Sbjct: 119 --RLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIPSALVRQLKDGGVLVIPVEEG 176

Query: 238 WRQNLSVIDKGPDG 251
             Q L  + K  + 
Sbjct: 177 VGQVLYKVVKRGEK 190

Length = 205

>gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide maturase system

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 24/128 (18%)

Query: 118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLN-NSLKNIKI 176
           PS +AR LE L   +++G RVL+IG+G GY A            LL   L  +++ ++++
Sbjct: 93  PSLVARMLEAL--DVEDGHRVLEIGTGTGYSAA-----------LLCHRLGDDNVTSVEV 139

Query: 177 SRPDLLQSK---------TLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPN 227
             P L                 +  D   GH    PYD I        V    L Q +P 
Sbjct: 140 D-PGLAARAASALAAAGYAPTVVTGDGLLGHPPRAPYDRIIATCAVRRVPPAWLRQTRPG 198

Query: 228 GRIVAPVG 235
           G I+  + 
Sbjct: 199 GVILTTLS 206

Members of this protein family are predicted SAM-dependent methyltransferases that regularly occur in the context of a putative peptide modification ATP-grasp enzyme (TIGR04187, related to enzymes of microviridin maturation) and a putative ribosomal peptide modification target (TIGR04186). Length = 363

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	364
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	100.0
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	100.0
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.97
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.97
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.97
KOG1661|consensus	237		99.96
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.95
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.94
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.91
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.9
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.85
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.7
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.65
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.63
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.63
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.62
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.59
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.59
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.57
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.57
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.55
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.55
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.55
PLN02244	340	tocopherol O-methyltransferase	99.55
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.54
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.54
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.54
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.52
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.52
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.52
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.51
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.51
PRK11207	197	tellurite resistance protein TehB; Provisional	99.5
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.5
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.5
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.5
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.5
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.49
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.49
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.48
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.47
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.47
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.46
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.46
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.46
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.45
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.45
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.45
PRK07402	196	precorrin-6B methylase; Provisional	99.45
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.44
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.43
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.41
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.41
PLN02336	475	phosphoethanolamine N-methyltransferase	99.41
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.41
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.41
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.4
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.4
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.39
PRK12335	287	tellurite resistance protein TehB; Provisional	99.39
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.39
PRK04266	226	fibrillarin; Provisional	99.38
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.38
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.38
KOG1270|consensus	282		99.38
PRK14967	223	putative methyltransferase; Provisional	99.37
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.37
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.36
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.36
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.36
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.35
PRK08317	241	hypothetical protein; Provisional	99.35
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.35
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	99.35
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.35
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.34
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.33
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.33
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.33
PRK14968	188	putative methyltransferase; Provisional	99.33
COG2890	280	HemK Methylase of polypeptide chain release factor	99.32
PLN02490	340	MPBQ/MSBQ methyltransferase	99.32
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.32
KOG1540|consensus	296		99.32
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.32
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.32
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.31
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.31
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.3
COG4123	248	Predicted O-methyltransferase [General function pr	99.29
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.29
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.28
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.27
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.27
PRK06922	677	hypothetical protein; Provisional	99.27
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.27
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.26
PRK05785	226	hypothetical protein; Provisional	99.26
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.25
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.25
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.25
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.25
PLN02336	475	phosphoethanolamine N-methyltransferase	99.21
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.21
PLN03075	296	nicotianamine synthase; Provisional	99.21
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.2
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.2
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.19
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.19
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.19
PTZ00146	293	fibrillarin; Provisional	99.18
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.18
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	99.18
PLN02672	1082	methionine S-methyltransferase	99.17
PRK00811	283	spermidine synthase; Provisional	99.17
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.17
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.16
PRK04457	262	spermidine synthase; Provisional	99.16
KOG1271|consensus	227		99.15
COG4122	219	Predicted O-methyltransferase [General function pr	99.15
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.14
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.14
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.14
PLN02476	278	O-methyltransferase	99.14
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.12
PRK06202	232	hypothetical protein; Provisional	99.12
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.12
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.11
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.1
PLN02366	308	spermidine synthase	99.1
KOG1541|consensus	270		99.09
TIGR03438	301	probable methyltransferase. This model represents	99.09
PHA03412	241	putative methyltransferase; Provisional	99.08
KOG2904|consensus	328		99.07
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.07
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.06
TIGR00438	188	rrmJ cell division protein FtsJ.	99.06
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.05
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.05
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.05
KOG4300|consensus	252		99.05
PHA03411	279	putative methyltransferase; Provisional	99.05
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.03
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.02
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	99.02
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.02
PRK01581	374	speE spermidine synthase; Validated	99.01
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.0
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.0
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.99
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.96
KOG3420|consensus	185		98.96
PRK03612	521	spermidine synthase; Provisional	98.95
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.94
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.93
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.92
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.92
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.91
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.91
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.89
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.85
KOG2899|consensus	288		98.85
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.84
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.82
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.81
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.8
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.79
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.79
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.79
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.78
KOG1122|consensus	460		98.77
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.77
KOG1975|consensus	389		98.76
PLN02823	336	spermine synthase	98.73
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.7
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.69
KOG3010|consensus	261		98.68
COG2521	287	Predicted archaeal methyltransferase [General func	98.68
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.66
KOG1499|consensus	346		98.66
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.66
KOG0820|consensus	315		98.64
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.62
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.62
PRK04148	134	hypothetical protein; Provisional	98.6
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.6
COG2520	341	Predicted methyltransferase [General function pred	98.59
PRK00536	262	speE spermidine synthase; Provisional	98.58
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.58
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.57
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.55
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.55
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.54
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.53
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.52
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.51
KOG3191|consensus	209		98.5
KOG1500|consensus	517		98.48
KOG2915|consensus	314		98.48
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.47
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.47
KOG2361|consensus	264		98.46
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.45
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.43
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.38
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.36
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.35
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.35
KOG1663|consensus	237		98.33
KOG2940|consensus	325		98.33
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.32
COG4076	252	Predicted RNA methylase [General function predicti	98.27
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.26
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.25
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.24
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.22
KOG2187|consensus	534		98.18
COG3897	218	Predicted methyltransferase [General function pred	98.18
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.08
KOG2198|consensus	375		98.08
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.05
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.04
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.03
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.01
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.99
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.98
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.96
KOG3045|consensus	325		97.92
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.89
PF13679	141	Methyltransf_32: Methyltransferase domain	97.87
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.84
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.72
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.71
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.71
PRK10742	250	putative methyltransferase; Provisional	97.68
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.58
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.58
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.56
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.55
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.53
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.47
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.45
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.43
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.43
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.4
KOG1269|consensus	364		97.27
COG0286	489	HsdM Type I restriction-modification system methyl	97.26
KOG1331|consensus	293		97.24
KOG2730|consensus	263		97.24
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.23
KOG3987|consensus	288		97.21
KOG1709|consensus	271		97.13
KOG1596|consensus	317		97.07
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.02
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.02
KOG4589|consensus	232		96.99
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.98
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	96.93
KOG3115|consensus	249		96.9
KOG2671|consensus	421		96.87
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.85
KOG2352|consensus	482		96.84
KOG3178|consensus	342		96.84
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.76
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	96.73
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	96.72
KOG1562|consensus	337		96.66
KOG0024|consensus	354		96.63
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	96.58
COG4798	238	Predicted methyltransferase [General function pred	96.58
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.54
PRK11524	284	putative methyltransferase; Provisional	96.44
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	96.37
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.2
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.13
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.13
KOG4058|consensus	199		96.08
PRK13699	227	putative methylase; Provisional	95.98
PHA01634	156	hypothetical protein	95.96
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	95.92
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	95.84
KOG0822|consensus	649		95.58
KOG3201|consensus	201		95.47
COG3129	292	Predicted SAM-dependent methyltransferase [General	95.37
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	95.29
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.22
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	94.98
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	94.92
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	94.89
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	94.82
TIGR00497	501	hsdM type I restriction system adenine methylase (	94.74
KOG1501|consensus	636		94.69
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	94.66
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	94.65
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	94.29
KOG1099|consensus	294		94.21
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	94.18
KOG2360|consensus	413		93.81
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	93.78
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	93.59
PTZ00357	1072	methyltransferase; Provisional	93.32
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	93.25
COG1565	370	Uncharacterized conserved protein [Function unknow	93.25
KOG1253|consensus	525		93.21
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	93.08
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	93.05
PLN02586	360	probable cinnamyl alcohol dehydrogenase	92.86
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	92.85
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	92.68
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	92.58
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	92.5
PLN02740	381	Alcohol dehydrogenase-like	92.5
KOG1227|consensus	351		92.42
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	92.21
KOG2793|consensus	248		91.91
PLN02827	378	Alcohol dehydrogenase-like	91.83
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	91.79
KOG2352|consensus	482		91.78
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	91.77
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	91.74
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	91.65
COG1568	354	Predicted methyltransferases [General function pre	91.56
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	91.52
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	91.35
PLN02514	357	cinnamyl-alcohol dehydrogenase	91.27
KOG2078|consensus	495		91.24
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	91.03
KOG2798|consensus	369		90.93
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	90.89
PRK10458	467	DNA cytosine methylase; Provisional	90.72
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	90.69
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	90.63
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	90.5
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	90.15
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	89.95
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	89.67
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	89.64
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	89.6
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	89.49
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	89.43
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	89.33
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	89.16
PLN02178	375	cinnamyl-alcohol dehydrogenase	89.08
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	89.05
PLN02668	386	indole-3-acetate carboxyl methyltransferase	89.04
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	88.94
KOG2651|consensus	476		88.79
COG2933	358	Predicted SAM-dependent methyltransferase [General	88.75
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	87.99
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	87.93
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	87.87
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	87.7
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	87.65
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	87.61
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	87.61
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	87.59
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	87.49
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	87.32
COG4301	321	Uncharacterized conserved protein [Function unknow	87.17
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	87.15
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	87.14
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	86.96
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	86.52
PF03269	177	DUF268: Caenorhabditis protein of unknown function	86.33
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	85.9
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	85.86
KOG2920|consensus	282		85.83
PRK11524	284	putative methyltransferase; Provisional	85.67
COG0863	302	DNA modification methylase [DNA replication, recom	84.58
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	84.06
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	83.99
PLN02494	477	adenosylhomocysteinase	83.94
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	83.46
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	83.31
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	83.24
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	83.1
KOG0023|consensus	360		82.72
PRK08306	296	dipicolinate synthase subunit A; Reviewed	82.29
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	82.19
PLN02702	364	L-idonate 5-dehydrogenase	81.99
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	81.95
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	81.85
PRK10083	339	putative oxidoreductase; Provisional	81.84
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	81.69
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	81.02
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	81.01
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	80.78
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	80.39
COG1255	129	Uncharacterized protein conserved in archaea [Func	80.36

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=100.00  E-value=3.6e-34  Score=259.24  Aligned_cols=201  Identities=34%  Similarity=0.471  Sum_probs=173.0

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCcc-ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEE
Q psy7830          62 SYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPK-FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLD  140 (364)
Q Consensus        62 ~~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~~~-~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLD  140 (364)
                      +++.|+++|++.|.+.|+.+.++|+.+||+.|+|..++ .+|.|.+++++.|+++++|+++++++++|.  +++|++|||
T Consensus         1 ~~~~lv~~l~~~g~v~~~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~--l~pg~~VLe   78 (209)
T PF01135_consen    1 SNKALVDNLIRPGDVTDPRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEALD--LKPGDRVLE   78 (209)
T ss_dssp             CHHHHHHHHHHTTSS-SHHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTT--C-TT-EEEE
T ss_pred             CHHHHHHHHHHcCCCCCHHHHHHHHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHHh--cCCCCEEEE
Confidence            36789999999999999999999999999999999766 899999999999999999999999999998  999999999


Q ss_pred             ECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChHH
Q psy7830         141 IGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTE  215 (364)
Q Consensus       141 iGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~  215 (364)
                      ||||+||.+..++.+     +|+++|+++.+++.|++++..     ++..|+.++.+|....++..++||+|+++..+..
T Consensus        79 IGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~-----~~~~nv~~~~gdg~~g~~~~apfD~I~v~~a~~~  153 (209)
T PF01135_consen   79 IGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLAR-----LGIDNVEVVVGDGSEGWPEEAPFDRIIVTAAVPE  153 (209)
T ss_dssp             ES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHH-----HTTHSEEEEES-GGGTTGGG-SEEEEEESSBBSS
T ss_pred             ecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHH-----hccCceeEEEcchhhccccCCCcCEEEEeeccch
Confidence            999999999999987     699999999999999999998     3456999999999888777789999999999999


Q ss_pred             HHHHHHhccCCCcEEEEEEcCCCcceEEEEEecCCCceeEEEeeceeEEeccCc
Q psy7830         216 VSKTILSQLKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRVSSDFLCNL  269 (364)
Q Consensus       216 l~~~l~~~LkpGG~Lvi~~~~~~~~~l~~~~~~~~g~~~~~~l~~~~f~~l~~~  269 (364)
                      ++..+.++||+||+||+++.....+.+.++.|..++.++.+.++.++|+|+.+.
T Consensus       154 ip~~l~~qL~~gGrLV~pi~~~~~~~l~~~~k~~~g~~~~~~~~~~~fvpl~~~  207 (209)
T PF01135_consen  154 IPEALLEQLKPGGRLVAPIGQGGSQRLVRITKKGDGEFSREELFPVRFVPLVGG  207 (209)
T ss_dssp             --HHHHHTEEEEEEEEEEESSSSSEEEEEEEEETTTEEEEEEEEEE---B-BSC
T ss_pred             HHHHHHHhcCCCcEEEEEEccCCceEEEEEEEeCCCcEEEEEEeeEEEEeccCC
Confidence            999999999999999999999778999999999989999999999999999865

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.1e-34  Score=253.63  Aligned_cols=198  Identities=32%  Similarity=0.432  Sum_probs=186.2

Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCcc-ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEEC
Q psy7830          64 ADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPK-FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIG  142 (364)
Q Consensus        64 ~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~~~-~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiG  142 (364)
                      +.|.++|...+ +.++.++++|..+||+.|+|..++ .+|.|..++++.|+++|+|+++++++++|.  ++++++|||||
T Consensus         4 ~~l~~~lr~~~-i~~~~v~~A~~~vPRe~FVp~~~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~--~~~g~~VLEIG   80 (209)
T COG2518           4 RMLVERLRTEG-ITDERVLKAFLAVPRELFVPAAYKHLAYEDRALPIGCGQTISAPHMVARMLQLLE--LKPGDRVLEIG   80 (209)
T ss_pred             HHHHHHHHHcC-CCcHHHHHHHHhCCHHhccCchhhcccccCCcccCCCCceecCcHHHHHHHHHhC--CCCCCeEEEEC
Confidence            34777777776 567999999999999999998876 899999999999999999999999999998  89999999999


Q ss_pred             CCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChHHHHHHH
Q psy7830         143 SGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTI  220 (364)
Q Consensus       143 cGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~l~~~l  220 (364)
                      |||||.++.+++.  +|+++|+++...+.|++|++.     ++..||.++++|....+++.++||+|++++....+++.+
T Consensus        81 tGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~-----lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP~~L  155 (209)
T COG2518          81 TGSGYQAAVLARLVGRVVSIERIEELAEQARRNLET-----LGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPEAL  155 (209)
T ss_pred             CCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHH-----cCCCceEEEECCcccCCCCCCCcCEEEEeeccCCCCHHH
Confidence            9999999999999  999999999999999999999     667889999999999998889999999999999999999


Q ss_pred             HhccCCCcEEEEEEcCCCcceEEEEEecCCCceeEEEeeceeEEeccCc
Q psy7830         221 LSQLKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRVSSDFLCNL  269 (364)
Q Consensus       221 ~~~LkpGG~Lvi~~~~~~~~~l~~~~~~~~g~~~~~~l~~~~f~~l~~~  269 (364)
                      .++||+||+|+++++....+.+.++.|.+++.+..+.+++++|+|+.+.
T Consensus       156 l~QL~~gGrlv~PvG~~~~q~l~~~~k~~~~~~~~~~l~~v~~vPl~~~  204 (209)
T COG2518         156 LDQLKPGGRLVIPVGSGPAQRLLRITKDGDGNFERRDLFNVRFVPLVGG  204 (209)
T ss_pred             HHhcccCCEEEEEEccCCcEEEEEEEEcCCCcEEEeeeccceeeecCCc
Confidence            9999999999999998889999999999999999999999999999873

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.97  E-value=6.7e-30  Score=232.79  Aligned_cols=200  Identities=28%  Similarity=0.412  Sum_probs=180.4

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCcc-ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEE
Q psy7830          62 SYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPK-FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLD  140 (364)
Q Consensus        62 ~~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~~~-~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLD  140 (364)
                      .++.|+++|.+.|.+.|+.++++|+.+||+.|+|.... .+|.|.+++++.|+++++|.+++++++.+.  ++++++|||
T Consensus         5 ~~~~~v~~l~~~~~v~~~~v~~a~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~~~~~p~~~~~~~~~l~--~~~g~~VLd   82 (212)
T PRK13942          5 EKRRVIEELIREGYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIMCELLD--LKEGMKVLE   82 (212)
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHcCCHhhcCCchhhhcCcCCCCccCCCCCEeCcHHHHHHHHHHcC--CCCcCEEEE
Confidence            34779999999999999999999999999999999765 899999999999999999999999999997  789999999


Q ss_pred             ECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChHH
Q psy7830         141 IGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTE  215 (364)
Q Consensus       141 iGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~  215 (364)
                      +|||+|+++..+++.     +|+++|+++.+++.++++++.     .+..+++++.+|+...+...++||+|+++...++
T Consensus        83 IG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~-----~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~  157 (212)
T PRK13942         83 IGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKK-----LGYDNVEVIVGDGTLGYEENAPYDRIYVTAAGPD  157 (212)
T ss_pred             ECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-----cCCCCeEEEECCcccCCCcCCCcCEEEECCCccc
Confidence            999999999888765     899999999999999999987     3456899999999876665678999999999999


Q ss_pred             HHHHHHhccCCCcEEEEEEcCCCcceEEEEEecCCCceeEEEeeceeEEeccCcc
Q psy7830         216 VSKTILSQLKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRVSSDFLCNLE  270 (364)
Q Consensus       216 l~~~l~~~LkpGG~Lvi~~~~~~~~~l~~~~~~~~g~~~~~~l~~~~f~~l~~~~  270 (364)
                      +++.+.+.|||||+|+++++.. .+.+..+.|.. +.++.+.++.+.|+|+.+..
T Consensus       158 ~~~~l~~~LkpgG~lvi~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~~  210 (212)
T PRK13942        158 IPKPLIEQLKDGGIMVIPVGSY-SQELIRVEKDN-GKIIKKKLGEVAFVPLIGKN  210 (212)
T ss_pred             chHHHHHhhCCCcEEEEEEcCC-CcEEEEEEEEC-CEEEEEEeccEEEEecccCC
Confidence            9999999999999999999875 67888888864 67889999999999998754

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.97  E-value=4.3e-29  Score=226.35  Aligned_cols=198  Identities=21%  Similarity=0.306  Sum_probs=175.2

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCcc-ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEE
Q psy7830          63 YADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPK-FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDI  141 (364)
Q Consensus        63 ~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~~~-~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDi  141 (364)
                      ++.|++++.+.|.+.|+.++++|+.+||+.|+|..++ .+|.|.+++++.+++++.|.+++.+++.+.  ++++++|||+
T Consensus         2 ~~~lv~~~~~~~~v~~~~v~~a~~~vpR~~fv~~~~~~~ay~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDi   79 (205)
T PRK13944          2 AKRLVEELVREGIIKSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVAMMCELIE--PRPGMKILEV   79 (205)
T ss_pred             HHHHHHHHHHcCCcCCHHHHHHHHhCCHhHcCChhHHhcCccCCCcccCCCCEechHHHHHHHHHhcC--CCCCCEEEEE
Confidence            3569999999998999999999999999999998765 899999999999999999999999999987  6889999999


Q ss_pred             CCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChHHH
Q psy7830         142 GSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEV  216 (364)
Q Consensus       142 GcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~l  216 (364)
                      |||+|+.+..+++.     +|+++|+++.+++.|++|+..+.   + ..+++++.+|+....+..++||+|+++....++
T Consensus        80 G~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~---~-~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~  155 (205)
T PRK13944         80 GTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG---Y-WGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTI  155 (205)
T ss_pred             CcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---C-CCcEEEEECCcccCCccCCCccEEEEccCcchh
Confidence            99999999888764     89999999999999999998722   1 136999999998765555789999999999999


Q ss_pred             HHHHHhccCCCcEEEEEEcCCCcceEEEEEecCCCceeEEEeeceeEEecc
Q psy7830         217 SKTILSQLKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRVSSDFLC  267 (364)
Q Consensus       217 ~~~l~~~LkpGG~Lvi~~~~~~~~~l~~~~~~~~g~~~~~~l~~~~f~~l~  267 (364)
                      ++++.++|+|||+|++++.....+.+..++|.. +.++.+.++.+.|+|++
T Consensus       156 ~~~l~~~L~~gG~lvi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~pl~  205 (205)
T PRK13944        156 PSALVRQLKDGGVLVIPVEEGVGQVLYKVVKRG-EKVEKRAITYVLFVPLR  205 (205)
T ss_pred             hHHHHHhcCcCcEEEEEEcCCCceEEEEEEEeC-CEEEEEEeceEEEEecC
Confidence            999999999999999999877677888888864 56888999999999984

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.97  E-value=7.9e-29  Score=226.19  Aligned_cols=203  Identities=26%  Similarity=0.395  Sum_probs=181.1

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCcc-ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEE
Q psy7830          60 TRSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPK-FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRV  138 (364)
Q Consensus        60 ~~~~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~~~-~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~V  138 (364)
                      ..++++|+++|.+.+.+.|+.+.++|+.+||+.|+|..+. .+|.|.+++++.++++++|.+++.+++.+.  ++++.+|
T Consensus         4 ~~~~~~~v~~~~~~~~v~~~~v~~a~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~V   81 (215)
T TIGR00080         4 ESQKKALIDKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLE--LKPGMKV   81 (215)
T ss_pred             hHHHHHHHHHHHhcCCcCCHHHHHHHHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhC--CCCcCEE
Confidence            3467889999999998999999999999999999998655 799999999999999999999999999997  7899999


Q ss_pred             EEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccCh
Q psy7830         139 LDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGT  213 (364)
Q Consensus       139 LDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~  213 (364)
                      ||+|||+|+++..+++.     +|+++|+++.+++.|++++..     .+.++++++.+|+........+||+|+++...
T Consensus        82 LDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~-----~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~  156 (215)
T TIGR00080        82 LEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK-----LGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAG  156 (215)
T ss_pred             EEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-----CCCCCeEEEECCcccCCcccCCCCEEEEcCCc
Confidence            99999999999999877     499999999999999999988     44568999999998765545689999999989


Q ss_pred             HHHHHHHHhccCCCcEEEEEEcCCCcceEEEEEecCCCceeEEEeeceeEEeccCccc
Q psy7830         214 TEVSKTILSQLKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRVSSDFLCNLEY  271 (364)
Q Consensus       214 ~~l~~~l~~~LkpGG~Lvi~~~~~~~~~l~~~~~~~~g~~~~~~l~~~~f~~l~~~~~  271 (364)
                      .++++.+.+.|+|||+|+++++. ..+.+..+.|. ++.+....++.+.|+|+.....
T Consensus       157 ~~~~~~~~~~L~~gG~lv~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~pl~~~~~  212 (215)
T TIGR00080       157 PKIPEALIDQLKEGGILVMPVGE-YLQVLKRAEKR-GGEIIIKDVEPVAFVPLVGGEG  212 (215)
T ss_pred             ccccHHHHHhcCcCcEEEEEEcC-CceEEEEEEEe-CCEEEEEEeeeEEEEeCCCCcc
Confidence            99999999999999999999987 67777777775 5668889999999999987654

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>KOG1661|consensus

Probab=99.96  E-value=8.1e-28  Score=211.45  Aligned_cols=216  Identities=33%  Similarity=0.494  Sum_probs=194.1

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCcc-ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEE
Q psy7830          60 TRSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPK-FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRV  138 (364)
Q Consensus        60 ~~~~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~~~-~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~V  138 (364)
                      ..++++|++.|.+.++++.+.++++|+.++|..|.|..++ +.|.|.+..+|.+.++|.|++.+.++++|..+++||.+.
T Consensus         7 gs~n~~LId~L~~~~~Ir~~~v~~A~~a~dR~dy~p~~~~~n~y~d~pq~~G~n~~iSAp~mha~~le~L~~~L~pG~s~   86 (237)
T KOG1661|consen    7 GSDNDDLIDNLRENKIIRTRRVEQAMRATDRSDYAPRSERTNPYMDSPQKIGYNLTISAPHMHATALEYLDDHLQPGASF   86 (237)
T ss_pred             CcchHHHHHHHHhcchhHHHHHHHHHHhhchhhccccccccCCCCCCccccCCceEEcchHHHHHHHHHHHHhhccCcce
Confidence            3467899999999999999999999999999999999766 899999999999999999999999999999999999999


Q ss_pred             EEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcC-----CCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         139 LDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISR-----PDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       139 LDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~-----~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      ||+|+||||++..++.+      .++|||..++.++.+++|+....     ...+...++.++.+|......+..+||.|
T Consensus        87 LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~YDaI  166 (237)
T KOG1661|consen   87 LDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPYDAI  166 (237)
T ss_pred             eecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCcceE
Confidence            99999999999998866      45999999999999999998732     11234467899999999998888999999


Q ss_pred             EEccChHHHHHHHHhccCCCcEEEEEEcCCC-cceEEEEEecCCCceeEEEeeceeEEeccCcccccCC
Q psy7830         208 FFGAGTTEVSKTILSQLKPNGRIVAPVGNVW-RQNLSVIDKGPDGSISSKILRRVSSDFLCNLEYQLHP  275 (364)
Q Consensus       208 i~~~~~~~l~~~l~~~LkpGG~Lvi~~~~~~-~~~l~~~~~~~~g~~~~~~l~~~~f~~l~~~~~~~~~  275 (364)
                      ++.+..+.+++++.++|++||+|+++.+..+ .|.+..+.+..+|....+.++.+.|+|+.....++..
T Consensus       167 hvGAaa~~~pq~l~dqL~~gGrllip~~~~~~~q~~~~~dk~~~gki~~~~~f~v~yvPlt~~~~q~~~  235 (237)
T KOG1661|consen  167 HVGAAASELPQELLDQLKPGGRLLIPVGQDGGTQYLRQIDKNEDGKIKLRTLFSVRYVPLTSRESQPSR  235 (237)
T ss_pred             EEccCccccHHHHHHhhccCCeEEEeecccCceeEEEeecccccCceeeeEeeceEEEeccccccccCC
Confidence            9999999999999999999999999999754 7888888898889999999999999999988765543

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.95  E-value=3.9e-26  Score=207.86  Aligned_cols=201  Identities=26%  Similarity=0.342  Sum_probs=176.7

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCcc-ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEE
Q psy7830          60 TRSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPK-FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRV  138 (364)
Q Consensus        60 ~~~~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~~~-~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~V  138 (364)
                      ...++.|++++...+ +.++.+.++|+.++|+.|+|..+. .+|.|..++++.++.+++|.+++++++.+.  ++++++|
T Consensus         6 ~~~~~~~v~~l~~~~-~~~~~~~~a~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~--~~~~~~V   82 (212)
T PRK00312          6 SERFARLVLRLRAEG-ILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLE--LKPGDRV   82 (212)
T ss_pred             HHHHHHHHHHHHHcC-CCCHHHHHHHHcCCHhHcCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcC--CCCCCEE
Confidence            356888999998887 889999999999999999997654 789999999999999999999999999887  7889999


Q ss_pred             EEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChHHH
Q psy7830         139 LDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEV  216 (364)
Q Consensus       139 LDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~l  216 (364)
                      ||+|||+|+++..+++.  +|+++|+++.+++.+++++.+     .+..++++..+|........++||+|+++..++++
T Consensus        83 LeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~-----~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~  157 (212)
T PRK00312         83 LEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQ-----LGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPEI  157 (212)
T ss_pred             EEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHH-----CCCCceEEEECCcccCCCcCCCcCEEEEccCchhh
Confidence            99999999999988877  999999999999999999987     33467999999987655445789999999999999


Q ss_pred             HHHHHhccCCCcEEEEEEcCCCcceEEEEEecCCCceeEEEeeceeEEeccCc
Q psy7830         217 SKTILSQLKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRVSSDFLCNL  269 (364)
Q Consensus       217 ~~~l~~~LkpGG~Lvi~~~~~~~~~l~~~~~~~~g~~~~~~l~~~~f~~l~~~  269 (364)
                      ++.+.+.|+|||+++++++....+.+..+.+ .++.+..+.++.+.|+|+...
T Consensus       158 ~~~l~~~L~~gG~lv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~  209 (212)
T PRK00312        158 PRALLEQLKEGGILVAPVGGEEQQLLTRVRK-RGGRFEREVLEEVRFVPLVKG  209 (212)
T ss_pred             hHHHHHhcCCCcEEEEEEcCCCceEEEEEEE-cCCeEEEEEEccEEEEecCCC
Confidence            9999999999999999998555677777777 466788899999999998754

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=5.9e-27  Score=220.04  Aligned_cols=217  Identities=20%  Similarity=0.153  Sum_probs=166.3

Q ss_pred             eeeeeEEEEEec-CCCCCCCCCCCCCCCCCcceeeccCCCccchhhhcccHHHHHHHHHH-H-HHcCCCCCHHHH-----
Q psy7830          11 ERCVLAVFFILV-SRGQGWKPDPGMPIEPPPDLRSEMYDEDNENEENFFYTRSYADFLEG-L-KERKLLNHPRVE-----   82 (364)
Q Consensus        11 ~~~~~~~~~~~~-~~~~~~ep~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~-l-~~~~~~~~~~~~-----   82 (364)
                      |--|.+|+++|. .+++.|+|-.+++++|....+.++|....+...........-...+. . .....+.+++|.     
T Consensus        25 e~G~~~v~~eD~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~DW~~~wk~  104 (300)
T COG2264          25 EAGAVGVAIEDAKLDTPSFEPVFGEPRLWDGVKVKALFPADTDLALLLAELEALLALLELFAHVIEQEEDEEDWEREWKK  104 (300)
T ss_pred             hcCcceeeeecccccCcccccccCCCcccccceeEeeecccchHHHHHHHHHHHhcccccccceeEeecChHHHHHHHHh
Confidence            335789999999 58999999999999999999999999987654332211110000000 0 112234577774     


Q ss_pred             --HHHHhCCCCCccCCCcc--------ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHH
Q psy7830          83 --EAFYAVRRADFINVKPK--------FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAK  152 (364)
Q Consensus        83 --~a~~~v~R~~~~p~~~~--------~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~l  152 (364)
                        .|++...|.+++|+|..        ..-.|++++||+|.|+    ++..|+++|.++.++|.+|||+|||||.+++++
T Consensus       105 ~~~P~rig~~f~I~Psw~~~~~~~~~~~i~lDPGlAFGTG~Hp----TT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa  180 (300)
T COG2264         105 YFHPVRIGERFVIVPSWREYPEPSDELNIELDPGLAFGTGTHP----TTSLCLEALEKLLKKGKTVLDVGCGSGILAIAA  180 (300)
T ss_pred             cCCcEEeeeeEEECCCCccCCCCCCceEEEEccccccCCCCCh----hHHHHHHHHHHhhcCCCEEEEecCChhHHHHHH
Confidence              45677888999999974        3567999999999999    999999999999999999999999999999999


Q ss_pred             Hcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChH---HHHHHHHhccCC
Q psy7830         153 EWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTT---EVSKTILSQLKP  226 (364)
Q Consensus       153 a~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~---~l~~~l~~~Lkp  226 (364)
                      +++   +|+|+|+||.+++.|++|+..|.   +.. .++....+..... ..++||+|++|...+   .+.+.+.+.|||
T Consensus       181 ~kLGA~~v~g~DiDp~AV~aa~eNa~~N~---v~~-~~~~~~~~~~~~~-~~~~~DvIVANILA~vl~~La~~~~~~lkp  255 (300)
T COG2264         181 AKLGAKKVVGVDIDPQAVEAARENARLNG---VEL-LVQAKGFLLLEVP-ENGPFDVIVANILAEVLVELAPDIKRLLKP  255 (300)
T ss_pred             HHcCCceEEEecCCHHHHHHHHHHHHHcC---Cch-hhhcccccchhhc-ccCcccEEEehhhHHHHHHHHHHHHHHcCC
Confidence            999   89999999999999999999865   221 1223333333222 236899999999765   467899999999


Q ss_pred             CcEEEEEEcC
Q psy7830         227 NGRIVAPVGN  236 (364)
Q Consensus       227 GG~Lvi~~~~  236 (364)
                      ||++++|=--
T Consensus       256 gg~lIlSGIl  265 (300)
T COG2264         256 GGRLILSGIL  265 (300)
T ss_pred             CceEEEEeeh
Confidence            9999997643

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.91  E-value=8.2e-25  Score=207.31  Aligned_cols=212  Identities=21%  Similarity=0.160  Sum_probs=116.9

Q ss_pred             eeeEEEEEecC---CCCCCCCCCCCCCCCCcceeeccCCCccchhhhcccHHH-HHHHHHHHHHcCCCCCHHHHH-----
Q psy7830          13 CVLAVFFILVS---RGQGWKPDPGMPIEPPPDLRSEMYDEDNENEENFFYTRS-YADFLEGLKERKLLNHPRVEE-----   83 (364)
Q Consensus        13 ~~~~~~~~~~~---~~~~~ep~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~-----   83 (364)
                      -+.+|..+|..   ++++|||.++..+.|....+.++|+...+...+...... ...+...-.....+.+++|..     
T Consensus        25 G~~gv~~ed~~~~~~~~~~e~~~~~~~~~~~~~v~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~dW~~~Wk~~  104 (295)
T PF06325_consen   25 GANGVEIEDPDLLDEEPIFEPDPDEEPLWDEVRVKAYFPEDEDIEELLAALRELLENLGEIEIEIEEIEEEDWEEAWKKY  104 (295)
T ss_dssp             ---------------------------------------------------------------EEEE--HHCHHHHHHHH
T ss_pred             CCCEEEEEeccccccCcccccCCCCcccccCceEEEEeCCCcChHHHHHHHHHHhhccCCCceEEEEeccccchHHHHhc
Confidence            35677888887   889999999988889999999999987655543322111 111111112333456677744     


Q ss_pred             --HHHhCCCCCccCCCcc--------ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHH
Q psy7830          84 --AFYAVRRADFINVKPK--------FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKE  153 (364)
Q Consensus        84 --a~~~v~R~~~~p~~~~--------~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la  153 (364)
                        |+...+|.+++|+|..        ..+.|++++||+|.|.    ++..|+++|..+..+|++|||+|||||.+++.++
T Consensus       105 ~~P~~vg~~~~I~P~w~~~~~~~~~~~I~idPg~AFGTG~H~----TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~  180 (295)
T PF06325_consen  105 FKPIRVGDRLVIVPSWEEYPEPPDEIVIEIDPGMAFGTGHHP----TTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAA  180 (295)
T ss_dssp             ---EEECTTEEEEETT----SSTTSEEEEESTTSSS-SSHCH----HHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHH
T ss_pred             CccEEECCcEEEECCCcccCCCCCcEEEEECCCCcccCCCCH----HHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHH
Confidence              4556778899999864        4578999999999999    9999999999989999999999999999999999


Q ss_pred             cc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChHH---HHHHHHhccCCC
Q psy7830         154 WL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTE---VSKTILSQLKPN  227 (364)
Q Consensus       154 ~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~---l~~~l~~~LkpG  227 (364)
                      ++   +|+|+|+||.+++.|++|+..|.   +.. ++.+.  ...+..  .++||+|++|....-   +.+.+.+.|+||
T Consensus       181 klGA~~v~a~DiDp~Av~~a~~N~~~N~---~~~-~~~v~--~~~~~~--~~~~dlvvANI~~~vL~~l~~~~~~~l~~~  252 (295)
T PF06325_consen  181 KLGAKKVVAIDIDPLAVEAARENAELNG---VED-RIEVS--LSEDLV--EGKFDLVVANILADVLLELAPDIASLLKPG  252 (295)
T ss_dssp             HTTBSEEEEEESSCHHHHHHHHHHHHTT----TT-CEEES--CTSCTC--CS-EEEEEEES-HHHHHHHHHHCHHHEEEE
T ss_pred             HcCCCeEEEecCCHHHHHHHHHHHHHcC---CCe-eEEEE--Eecccc--cccCCEEEECCCHHHHHHHHHHHHHhhCCC
Confidence            98   89999999999999999999865   432 55442  211221  378999999998764   557888999999


Q ss_pred             cEEEEEEcC
Q psy7830         228 GRIVAPVGN  236 (364)
Q Consensus       228 G~Lvi~~~~  236 (364)
                      |+|++|=--
T Consensus       253 G~lIlSGIl  261 (295)
T PF06325_consen  253 GYLILSGIL  261 (295)
T ss_dssp             EEEEEEEEE
T ss_pred             CEEEEcccc
Confidence            999997643

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.90  E-value=5.5e-22  Score=190.66  Aligned_cols=197  Identities=26%  Similarity=0.352  Sum_probs=164.0

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCcc--ccccCCCcee-cCC---CccChHHHHHHHHHHHhccCCCCC
Q psy7830          63 YADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPK--FGFCDIPYAF-ANQ---VVMEPPSYIARCLEQLVDHLQNGS  136 (364)
Q Consensus        63 ~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~~~--~~y~d~~l~i-g~g---~~~s~P~~~a~~l~~L~~~l~~g~  136 (364)
                      ++.|++.+...| +.| .++++|..+||+.|+|..+.  .+|.|..+++ .+|   +++++|.+.+.+++.+.  +++++
T Consensus         7 ~~~lv~~l~~~g-v~d-~vl~a~~~vpRe~Fvp~~~~~~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L~--i~~g~   82 (322)
T PRK13943          7 REKLFWILKKYG-ISD-HIAKAFLEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGM   82 (322)
T ss_pred             HHHHHHHHHHcC-CcH-HHHHHHHcCCHHHcCCcchhhhhccCCCcccccCCCcccccCCcHHHHHHHHHhcC--CCCCC
Confidence            467999998888 667 99999999999999998752  6899998876 555   57889999999999886  78899


Q ss_pred             EEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEcc
Q psy7830         137 RVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGA  211 (364)
Q Consensus       137 ~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~  211 (364)
                      +|||+|||+|+++..+++.     .|+++|+++.+++.|++++..     .+.+++.++.+|+.......++||+|+++.
T Consensus        83 ~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~-----~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~  157 (322)
T PRK13943         83 RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRR-----LGIENVIFVCGDGYYGVPEFAPYDVIFVTV  157 (322)
T ss_pred             EEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH-----cCCCcEEEEeCChhhcccccCCccEEEECC
Confidence            9999999999999999875     599999999999999999987     334689999999876655556899999999


Q ss_pred             ChHHHHHHHHhccCCCcEEEEEEcCC--CcceEEEEEecCCCceeEEEeeceeEEeccCc
Q psy7830         212 GTTEVSKTILSQLKPNGRIVAPVGNV--WRQNLSVIDKGPDGSISSKILRRVSSDFLCNL  269 (364)
Q Consensus       212 ~~~~l~~~l~~~LkpGG~Lvi~~~~~--~~~~l~~~~~~~~g~~~~~~l~~~~f~~l~~~  269 (364)
                      ....++..+.+.|+|||+++++....  ..+......+. ++.+.....+.++|++..+.
T Consensus       158 g~~~ip~~~~~~LkpgG~Lvv~~~~~l~~~~~~~~~~r~-~~~~~~~~~~~~~~l~~~G~  216 (322)
T PRK13943        158 GVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKK-DPYLVGNYKLETRFIKAGGN  216 (322)
T ss_pred             chHHhHHHHHHhcCCCCEEEEEeCCccCCCCceEEEEec-CCCceEEEEEEeeEEcccch
Confidence            88889999999999999999988653  34455555555 44477778888889888654

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.85  E-value=8e-21  Score=180.88  Aligned_cols=209  Identities=20%  Similarity=0.133  Sum_probs=153.3

Q ss_pred             eeeeEEEEEecCCCCCCCC-CCCCCCCCCcceeeccCCCccchhhhcccHHHHHHHHHHH--------HHcCCCCCHHHH
Q psy7830          12 RCVLAVFFILVSRGQGWKP-DPGMPIEPPPDLRSEMYDEDNENEENFFYTRSYADFLEGL--------KERKLLNHPRVE   82 (364)
Q Consensus        12 ~~~~~~~~~~~~~~~~~ep-~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l--------~~~~~~~~~~~~   82 (364)
                      --|.+|+++|..+.+.|+| .|+..+.|......+.|.......+      .........        .....+.+++|.
T Consensus        23 ~g~~gv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~dW~   96 (288)
T TIGR00406        23 AGAVGVTFEDDKDTIYFEPHLPGEKRLWGNLDVIALFDAETDMNN------SVIPLLEAFCLDLGRNHKIEFDEFSKDWE   96 (288)
T ss_pred             cCCCEEEEEcCCCCceecCCCCCCccEEEEEEeeccCcccchHHH------HHHHHHHhcccCCCcceeEEeecchhhHH
Confidence            3478999999999888988 7787777877777777765431110      000111000        111123367775


Q ss_pred             HHH-------HhCCCCCccCCCcc--------ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccH
Q psy7830          83 EAF-------YAVRRADFINVKPK--------FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGY  147 (364)
Q Consensus        83 ~a~-------~~v~R~~~~p~~~~--------~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~  147 (364)
                      +..       ...+|.+++|+|..        ....|++++||+|.|.    ++..|++++.....++++|||+|||+|+
T Consensus        97 ~~w~~~~~p~~~g~~~~i~p~w~~~~~~~~~~~i~ldpg~aFgtG~h~----tt~l~l~~l~~~~~~g~~VLDvGcGsG~  172 (288)
T TIGR00406        97 RAWKDNFHPVQFGKRFWICPSWRDVPSDEDALIIMLDPGLAFGTGTHP----TTSLCLEWLEDLDLKDKNVIDVGCGSGI  172 (288)
T ss_pred             HHHHHhCCCEEEcCeEEEECCCcCCCCCCCcEEEEECCCCcccCCCCH----HHHHHHHHHHhhcCCCCEEEEeCCChhH
Confidence            554       45567888888743        4568999999999999    8889999888777889999999999999


Q ss_pred             HHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChH---HHHHHHH
Q psy7830         148 MATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTT---EVSKTIL  221 (364)
Q Consensus       148 ~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~---~l~~~l~  221 (364)
                      ++..+++.   +|+++|+|+.+++.|++|+..+.   +. .++.+...+....  ..++||+|++|...+   .+++.+.
T Consensus       173 lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~---~~-~~~~~~~~~~~~~--~~~~fDlVvan~~~~~l~~ll~~~~  246 (288)
T TIGR00406       173 LSIAALKLGAAKVVGIDIDPLAVESARKNAELNQ---VS-DRLQVKLIYLEQP--IEGKADVIVANILAEVIKELYPQFS  246 (288)
T ss_pred             HHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC---CC-cceEEEecccccc--cCCCceEEEEecCHHHHHHHHHHHH
Confidence            99888876   89999999999999999998743   22 3566666653322  246899999998776   4668899


Q ss_pred             hccCCCcEEEEEEcC
Q psy7830         222 SQLKPNGRIVAPVGN  236 (364)
Q Consensus       222 ~~LkpGG~Lvi~~~~  236 (364)
                      +.|||||+++++...
T Consensus       247 ~~LkpgG~li~sgi~  261 (288)
T TIGR00406       247 RLVKPGGWLILSGIL  261 (288)
T ss_pred             HHcCCCcEEEEEeCc
Confidence            999999999987543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.70  E-value=9.4e-17  Score=149.93  Aligned_cols=144  Identities=22%  Similarity=0.223  Sum_probs=112.5

Q ss_pred             CCCHHHHHHHH-------hCCCCCccCCCcc-------ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEE
Q psy7830          76 LNHPRVEEAFY-------AVRRADFINVKPK-------FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDI  141 (364)
Q Consensus        76 ~~~~~~~~a~~-------~v~R~~~~p~~~~-------~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDi  141 (364)
                      +.+++|.....       ..+|..+.|+|..       ....|++++||+|.|.    ++..|++.+.....++.+|||+
T Consensus        51 ~~~~dw~~~w~~~~~p~~~g~~~~i~p~~~~~~~~~~~~i~i~p~~afgtg~h~----tt~~~l~~l~~~~~~~~~VLDi  126 (250)
T PRK00517         51 VEDEDWEREWKKYFHPIRIGDRLWIVPSWEDPPDPDEINIELDPGMAFGTGTHP----TTRLCLEALEKLVLPGKTVLDV  126 (250)
T ss_pred             cCchhHHHHHHHHCCCEEEcCCEEEECCCcCCCCCCeEEEEECCCCccCCCCCH----HHHHHHHHHHhhcCCCCEEEEe
Confidence            56777766543       4456777787753       3457899999999998    7888888888767889999999


Q ss_pred             CCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChH---H
Q psy7830         142 GSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTT---E  215 (364)
Q Consensus       142 GcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~---~  215 (364)
                      |||+|++++.+++.   +|+++|+|+.+++.|++|+..+.   +. .++.+..+|        .+||+|++|...+   .
T Consensus       127 GcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~---~~-~~~~~~~~~--------~~fD~Vvani~~~~~~~  194 (250)
T PRK00517        127 GCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG---VE-LNVYLPQGD--------LKADVIVANILANPLLE  194 (250)
T ss_pred             CCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC---CC-ceEEEccCC--------CCcCEEEEcCcHHHHHH
Confidence            99999999988877   69999999999999999998743   21 234333322        2799999987655   3


Q ss_pred             HHHHHHhccCCCcEEEEEEc
Q psy7830         216 VSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       216 l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      +++.+.+.|||||+++++-.
T Consensus       195 l~~~~~~~LkpgG~lilsgi  214 (250)
T PRK00517        195 LAPDLARLLKPGGRLILSGI  214 (250)
T ss_pred             HHHHHHHhcCCCcEEEEEEC
Confidence            56789999999999999753

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.65  E-value=1e-15  Score=140.58  Aligned_cols=101  Identities=23%  Similarity=0.294  Sum_probs=89.1

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      ..+|.+|||+|||||-++..+++.    +|+++|+|+.|++.+++++..     .+..+++++.+|++++++++++||+|
T Consensus        49 ~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~-----~~~~~i~fv~~dAe~LPf~D~sFD~v  123 (238)
T COG2226          49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKK-----KGVQNVEFVVGDAENLPFPDNSFDAV  123 (238)
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhc-----cCccceEEEEechhhCCCCCCccCEE
Confidence            458999999999999999999988    999999999999999999987     23346999999999999999999999


Q ss_pred             EEccChHH------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         208 FFGAGTTE------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       208 i~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      .+...+++      .++++.|+|||||++++-.-..
T Consensus       124 t~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~  159 (238)
T COG2226         124 TISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK  159 (238)
T ss_pred             EeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence            98877754      6899999999999988765443

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.63  E-value=3e-15  Score=121.66  Aligned_cols=96  Identities=30%  Similarity=0.397  Sum_probs=78.9

Q ss_pred             CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC-CCCCCCCCCeeEEE
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA-RWGHAEGGPYDVIF  208 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~-~~~~~~~~~fD~Ii  208 (364)
                      |+.+|||+|||+|.++..+++.    +|+++|+|+.+++.+++++....   . .++++++++|+ .... ..++||+|+
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~-~~~i~~~~~d~~~~~~-~~~~~D~v~   75 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG---L-SDRITFVQGDAEFDPD-FLEPFDLVI   75 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT---T-TTTEEEEESCCHGGTT-TSSCEEEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC---C-CCCeEEEECccccCcc-cCCCCCEEE
Confidence            6889999999999999999993    99999999999999999995411   1 36999999999 3222 245799999


Q ss_pred             Ecc-ChH---------HHHHHHHhccCCCcEEEEEE
Q psy7830         209 FGA-GTT---------EVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       209 ~~~-~~~---------~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ++. ..+         .+++.+.+.|+|||++++..
T Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   76 CSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             ECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            988 322         24789999999999999864

...

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.63  E-value=2.3e-15  Score=138.99  Aligned_cols=107  Identities=24%  Similarity=0.309  Sum_probs=79.5

Q ss_pred             HHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830         123 RCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG  197 (364)
Q Consensus       123 ~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~  197 (364)
                      .+++.+.  ..+|.+|||+|||||.++..+++.     +|+++|+|+.|++.|++++..     .+..+++++++|+.++
T Consensus        38 ~~~~~~~--~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~-----~~~~~i~~v~~da~~l  110 (233)
T PF01209_consen   38 KLIKLLG--LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKR-----EGLQNIEFVQGDAEDL  110 (233)
T ss_dssp             HHHHHHT----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHH-----TT--SEEEEE-BTTB-
T ss_pred             HHHhccC--CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHh-----hCCCCeeEEEcCHHHh
Confidence            3445444  678999999999999999998875     899999999999999999887     2235999999999999


Q ss_pred             CCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830         198 HAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       198 ~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +.++++||+|.+...++.      .++++.++|||||++++....
T Consensus       111 p~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~  155 (233)
T PF01209_consen  111 PFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFS  155 (233)
T ss_dssp             -S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeecc
Confidence            888899999998777653      678999999999999875543

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.62  E-value=5e-16  Score=144.85  Aligned_cols=189  Identities=14%  Similarity=0.044  Sum_probs=124.7

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG  197 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~  197 (364)
                      +...+++.+.  ..++.+|||+|||+|.++..++..  +|+++|+|+.|++.++++..          ...++++|+...
T Consensus        30 ~a~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~----------~~~~~~~d~~~~   97 (251)
T PRK10258         30 SADALLAMLP--QRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA----------ADHYLAGDIESL   97 (251)
T ss_pred             HHHHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC----------CCCEEEcCcccC
Confidence            4455555554  245789999999999999988877  99999999999999988742          346788998877


Q ss_pred             CCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcCCC-cceEEEEEecCCCceeEEEeeceeEEeccCcc
Q psy7830         198 HAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGNVW-RQNLSVIDKGPDGSISSKILRRVSSDFLCNLE  270 (364)
Q Consensus       198 ~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~~~-~~~l~~~~~~~~g~~~~~~l~~~~f~~l~~~~  270 (364)
                      +..+++||+|+++..+++      ++.++.+.|||||.++++....+ ..++...+...++..+     ...|.+.....
T Consensus        98 ~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~~~-----~~~~~~~~~l~  172 (251)
T PRK10258         98 PLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPH-----ANRFLPPDAIE  172 (251)
T ss_pred             cCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccCCc-----cccCCCHHHHH
Confidence            665678999999988765      57899999999999999886543 2222211111111111     12333333322


Q ss_pred             cccCCCCCCCccCCCccccceecCCCCCCC-----CCccccCCCCcccCCCCCCCccccCCCChhhhh
Q psy7830         271 YQLHPDVFPQPLNTSAEDTYTKMFPPPPGV-----RPRAVTFPLSSQERSPGNGSTKKYEFLPESTED  333 (364)
Q Consensus       271 ~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  333 (364)
                      ..+..  +....   ..+..+..|+++...     ..|++....   .+..+..+++.++++.+.|..
T Consensus       173 ~~l~~--~~~~~---~~~~~~~~f~~~~~~l~~lk~~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~  232 (251)
T PRK10258        173 QALNG--WRYQH---HIQPITLWFDDALSAMRSLKGIGATHLHE---GRDPRILTRSQLQRLQLAWPQ  232 (251)
T ss_pred             HHHHh--CCcee---eeeEEEEECCCHHHHHHHHHHhCCCCCCC---CCCCCCCcHHHHHHHHHhccc
Confidence            21222  22111   245577778887653     267766643   345667888888887777654

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.59  E-value=3.6e-15  Score=149.52  Aligned_cols=178  Identities=18%  Similarity=0.116  Sum_probs=123.4

Q ss_pred             ccCCCccchhhhcccHHHHHHHHHHHHHcCCCCCHHHHHHH-HhCCCCCccCCCccccccCCCceecCCCccChHHHHHH
Q psy7830          45 EMYDEDNENEENFFYTRSYADFLEGLKERKLLNHPRVEEAF-YAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIAR  123 (364)
Q Consensus        45 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~a~-~~v~R~~~~p~~~~~~y~d~~l~ig~g~~~s~P~~~a~  123 (364)
                      +++..++...|+|+.+.+++++.+.|.+.|....+.-..+. ..++... .+.+....|.++.+.+++.+++    ++..
T Consensus       157 ~~~~~~~~~~RvN~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~Qd~~s~----~~~~  231 (431)
T PRK14903        157 WNQEPLPTMLRVNSLAITREEVIKILAEEGTEAVPGKHSPFSLIVRKLG-VNMNDSRVIKDGLATVQGESSQ----IVPL  231 (431)
T ss_pred             HhcCCCCeeEEeeCCcCCHHHHHHHHHHCCCeeEECCCCCceEEEcCCC-CCcccChHHHCCeEEEECHHHH----HHHH
Confidence            33444555568899888888898888777732111111000 0111100 0111114677777777765443    3332


Q ss_pred             HHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC
Q psy7830         124 CLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH  198 (364)
Q Consensus       124 ~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~  198 (364)
                         .+.  +.+|.+|||+|||+|+.+..++..     +|+++|+++.+++.+++|+++     .+..++++..+|+....
T Consensus       232 ---~l~--~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r-----~g~~~v~~~~~Da~~l~  301 (431)
T PRK14903        232 ---LME--LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR-----LKLSSIEIKIADAERLT  301 (431)
T ss_pred             ---HhC--CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH-----cCCCeEEEEECchhhhh
Confidence               333  688999999999999999988875     899999999999999999988     44567999999987654


Q ss_pred             -CCCCCeeEEEEccChH----------------------------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         199 -AEGGPYDVIFFGAGTT----------------------------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       199 -~~~~~fD~Ii~~~~~~----------------------------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                       ...++||.|+++.+|.                            .++..+.+.|||||+|+.++.+-
T Consensus       302 ~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  369 (431)
T PRK14903        302 EYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV  369 (431)
T ss_pred             hhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence             2246799999988772                            14678889999999999988764

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.59  E-value=8.5e-15  Score=130.73  Aligned_cols=111  Identities=23%  Similarity=0.229  Sum_probs=91.3

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      ++++.+|||+|||+|..+..++..    +|+++|+++.+++.|+++++.+     +.++++++.+|+.+... .++||+|
T Consensus        43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~-----~l~~i~~~~~d~~~~~~-~~~fDlV  116 (187)
T PRK00107         43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAEL-----GLKNVTVVHGRAEEFGQ-EEKFDVV  116 (187)
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHc-----CCCCEEEEeccHhhCCC-CCCccEE
Confidence            456899999999999999988864    9999999999999999999883     34579999999987655 5689999


Q ss_pred             EEccC--hHHHHHHHHhccCCCcEEEEEEcCCCcceEEEEEec
Q psy7830         208 FFGAG--TTEVSKTILSQLKPNGRIVAPVGNVWRQNLSVIDKG  248 (364)
Q Consensus       208 i~~~~--~~~l~~~l~~~LkpGG~Lvi~~~~~~~~~l~~~~~~  248 (364)
                      +++..  .+.+++.+.+.|||||++++..+.....++..+.+.
T Consensus       117 ~~~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~  159 (187)
T PRK00107        117 TSRAVASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKA  159 (187)
T ss_pred             EEccccCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHh
Confidence            99754  357888999999999999999877654444444443

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.57  E-value=5.1e-14  Score=123.53  Aligned_cols=119  Identities=26%  Similarity=0.290  Sum_probs=104.0

Q ss_pred             CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE
Q psy7830         112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL  187 (364)
Q Consensus       112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v  187 (364)
                      |.-++.+.+-+..+..|.  +.+|++++|||||||..++.++..    +|+++|.++++++..++|+++     ++.+|+
T Consensus        14 ~~p~TK~EIRal~ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~-----fg~~n~   86 (187)
T COG2242          14 GGPMTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAAR-----FGVDNL   86 (187)
T ss_pred             CCCCcHHHHHHHHHHhhC--CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHH-----hCCCcE
Confidence            445788888899999998  899999999999999999999944    999999999999999999999     667899


Q ss_pred             EEEEcCCCCCCCCCCCeeEEEEccC--hHHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         188 EFILKDARWGHAEGGPYDVIFFGAG--TTEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       188 ~~~~~D~~~~~~~~~~fD~Ii~~~~--~~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +++.+|+.+......+||.||....  .+.+++.+...|||||+||+..-.-
T Consensus        87 ~vv~g~Ap~~L~~~~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~naitl  138 (187)
T COG2242          87 EVVEGDAPEALPDLPSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAITL  138 (187)
T ss_pred             EEEeccchHhhcCCCCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEeecH
Confidence            9999999876654447999999776  3578999999999999999987654

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.57  E-value=5.6e-15  Score=139.03  Aligned_cols=167  Identities=21%  Similarity=0.193  Sum_probs=116.8

Q ss_pred             hhcccHHHHHHHHHHHHHcCCCCCHHHHHH-HHhCCCCCccCCCccccccCCCceecCCCccChHHHHHHHHHHHhccCC
Q psy7830          55 ENFFYTRSYADFLEGLKERKLLNHPRVEEA-FYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQ  133 (364)
Q Consensus        55 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~a-~~~v~R~~~~p~~~~~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~  133 (364)
                      |+|+.+.+++++.+.|.+.|....+ +..+ ...+.....- ......|.++.+.+++.+++    ++..   .|.  ++
T Consensus         2 RvN~lk~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~qd~~s~----~~~~---~l~--~~   70 (264)
T TIGR00446         2 RVNTLKISVADLLQRLENRGVTLIP-WCEEGFFEVNESPLP-IGSTPEYLSGLYYIQEASSM----IPPL---ALE--PD   70 (264)
T ss_pred             eecCCCCCHHHHHHHHHhCCCceee-cCCCceEEEeCCCCC-cccChhHhCCeEEEECHHHH----HHHH---HhC--CC
Confidence            6788888899999998887742211 1100 0011100000 00014577777777765443    3333   233  68


Q ss_pred             CCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      +|.+|||+|||+|..+..++..     .|+++|+++.+++.+++|+++     .+..++.+...|+.......+.||+|+
T Consensus        71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~-----~g~~~v~~~~~D~~~~~~~~~~fD~Vl  145 (264)
T TIGR00446        71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINR-----CGVLNVAVTNFDGRVFGAAVPKFDAIL  145 (264)
T ss_pred             CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH-----cCCCcEEEecCCHHHhhhhccCCCEEE
Confidence            8999999999999999988775     899999999999999999988     334689999999876543345799999


Q ss_pred             EccChH----------------------------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         209 FGAGTT----------------------------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       209 ~~~~~~----------------------------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ++.+|.                            .++..+.++|||||+|+.++-+-
T Consensus       146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~  202 (264)
T TIGR00446       146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL  202 (264)
T ss_pred             EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            987653                            15678889999999999887654

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.55  E-value=5.2e-14  Score=121.26  Aligned_cols=98  Identities=26%  Similarity=0.329  Sum_probs=83.0

Q ss_pred             CCCCEEEEECCCccHHHHHHH-cc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--CCCCCee
Q psy7830         133 QNGSRVLDIGSGQGYMATAKE-WL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH--AEGGPYD  205 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la-~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~--~~~~~fD  205 (364)
                      +.+.+|||+|||+|.++..++ ..    +++|+|+++.+++.|+++++.     .+.+++++.++|+.+..  .. +.||
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~-----~~~~ni~~~~~d~~~l~~~~~-~~~D   75 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKE-----LGLDNIEFIQGDIEDLPQELE-EKFD   75 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHH-----TTSTTEEEEESBTTCGCGCSS-TTEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccc-----ccccccceEEeehhccccccC-CCee
Confidence            467899999999999999999 33    999999999999999999887     34569999999999854  22 6899


Q ss_pred             EEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830         206 VIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       206 ~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +|+++.++++      +++.+.+.|++||++++....
T Consensus        76 ~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   76 IIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             EEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            9999877643      678999999999999987654

...

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.55  E-value=1.3e-13  Score=113.61  Aligned_cols=111  Identities=25%  Similarity=0.298  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830         118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD  193 (364)
Q Consensus       118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D  193 (364)
                      ..+...+++.+.  +.++.+|||+|||+|..+..+++.    +|+++|+++.+++.+++++..     .+..+++++.+|
T Consensus         5 ~~~~~~~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~~~~   77 (124)
T TIGR02469         5 REVRALTLSKLR--LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARR-----FGVSNIVIVEGD   77 (124)
T ss_pred             HHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHH-----hCCCceEEEecc
Confidence            345566677665  567889999999999999999875    899999999999999999887     334578999988


Q ss_pred             CCCCC-CCCCCeeEEEEccCh---HHHHHHHHhccCCCcEEEEEEc
Q psy7830         194 ARWGH-AEGGPYDVIFFGAGT---TEVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       194 ~~~~~-~~~~~fD~Ii~~~~~---~~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      +.... ....+||.|++....   ..+++.+.+.|||||.+++.+.
T Consensus        78 ~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~  123 (124)
T TIGR02469        78 APEALEDSLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNAI  123 (124)
T ss_pred             ccccChhhcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEec
Confidence            76432 223589999987644   3478999999999999998763

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.55  E-value=7.2e-14  Score=131.30  Aligned_cols=103  Identities=23%  Similarity=0.227  Sum_probs=85.1

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHh-cCCCCCCCCCEEEEEcCCCCCCCCCCCee
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKI-SRPDLLQSKTLEFILKDARWGHAEGGPYD  205 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~-~~~~~l~~~~v~~~~~D~~~~~~~~~~fD  205 (364)
                      +.++.+|||+|||+|.++..+++.     +|+|+|+|++|++.|+++... ..   ...++++++++|+...+.++++||
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~---~~~~~i~~~~~d~~~lp~~~~sfD  147 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK---SCYKNIEWIEGDATDLPFDDCYFD  147 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh---ccCCCeEEEEcccccCCCCCCCEe
Confidence            678999999999999999888763     899999999999999887542 10   113589999999998877778999


Q ss_pred             EEEEccChHH------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         206 VIFFGAGTTE------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       206 ~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +|+++..+++      ++.++.++|||||++++.....
T Consensus       148 ~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~  185 (261)
T PLN02233        148 AITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK  185 (261)
T ss_pred             EEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence            9998877654      5789999999999999876543

>PLN02244 tocopherol O-methyltransferase

Probab=99.55  E-value=7.2e-14  Score=136.17  Aligned_cols=111  Identities=19%  Similarity=0.214  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHhccC-----CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEE
Q psy7830         119 SYIARCLEQLVDHL-----QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFI  190 (364)
Q Consensus       119 ~~~a~~l~~L~~~l-----~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~  190 (364)
                      .+...+++++.  +     .++.+|||||||+|.++..+++.   +|+|+|+++.+++.+++++....   + .++++++
T Consensus       100 ~~~~~~l~~~~--~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g---~-~~~v~~~  173 (340)
T PLN02244        100 RMIEESLAWAG--VPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQG---L-SDKVSFQ  173 (340)
T ss_pred             HHHHHHHHhcC--CCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcC---C-CCceEEE
Confidence            35556666654  3     57889999999999999999875   99999999999999999887622   1 2479999


Q ss_pred             EcCCCCCCCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEc
Q psy7830         191 LKDARWGHAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       191 ~~D~~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      .+|+.+.+..+++||+|++....++      ++.++.++|||||++++...
T Consensus       174 ~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~  224 (340)
T PLN02244        174 VADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTW  224 (340)
T ss_pred             EcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            9999887766789999999877654      56899999999999998764

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.54  E-value=1.3e-14  Score=145.84  Aligned_cols=186  Identities=17%  Similarity=0.087  Sum_probs=125.9

Q ss_pred             CCCCCCcceeeccCC-------------CccchhhhcccHHHHHHHHHHHHHcCCCCCHH-HHHHHHhCCC--CCccCCC
Q psy7830          34 MPIEPPPDLRSEMYD-------------EDNENEENFFYTRSYADFLEGLKERKLLNHPR-VEEAFYAVRR--ADFINVK   97 (364)
Q Consensus        34 ~~~~w~~~~~~~l~~-------------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~a~~~v~R--~~~~p~~   97 (364)
                      ..|.|--.++...|+             .+....|+|+.+.+++.+.+.|...|....+. +......++.  ..+... 
T Consensus       148 s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-  226 (434)
T PRK14901        148 SFPDWLVKLWLEWLGLEEAEQLCKWFNQPPSLDLRINPLRTSLEEVQAALAEAGITATPIPGLPQGLRLTGNPGSIRQL-  226 (434)
T ss_pred             CCcHHHHHHHHHHhCHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHCCCceEECCCCCCeEEecCCCCccccC-
Confidence            346675444444444             44445588998888888988887777422111 1100011111  001101 


Q ss_pred             ccccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHH
Q psy7830          98 PKFGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLK  172 (364)
Q Consensus        98 ~~~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~  172 (364)
                        ..|.++.+.+++..+.       .+...+.  +++|++|||+|||+|+.+..++..     +|+++|+++.+++.+++
T Consensus       227 --~~f~~g~~~~qd~~s~-------l~~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~  295 (434)
T PRK14901        227 --PGYEEGWWTVQDRSAQ-------LVAPLLD--PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQE  295 (434)
T ss_pred             --hHHhCCeEEEECHHHH-------HHHHHhC--CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHH
Confidence              3456666666654322       2333343  678999999999999999988875     79999999999999999


Q ss_pred             HHHhcCCCCCCCCCEEEEEcCCCCCC----CCCCCeeEEEEccChH----------------------------HHHHHH
Q psy7830         173 NIKISRPDLLQSKTLEFILKDARWGH----AEGGPYDVIFFGAGTT----------------------------EVSKTI  220 (364)
Q Consensus       173 ~~~~~~~~~l~~~~v~~~~~D~~~~~----~~~~~fD~Ii~~~~~~----------------------------~l~~~l  220 (364)
                      |+++     .+..+++++.+|+....    ...++||.|+++.+|.                            .++.++
T Consensus       296 n~~r-----~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a  370 (434)
T PRK14901        296 NAQR-----LGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESL  370 (434)
T ss_pred             HHHH-----cCCCeEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHH
Confidence            9988     44568999999987654    2235799999987652                            256788


Q ss_pred             HhccCCCcEEEEEEcC
Q psy7830         221 LSQLKPNGRIVAPVGN  236 (364)
Q Consensus       221 ~~~LkpGG~Lvi~~~~  236 (364)
                      .+.|||||+||.++-.
T Consensus       371 ~~~lkpgG~lvystcs  386 (434)
T PRK14901        371 APLLKPGGTLVYATCT  386 (434)
T ss_pred             HHhcCCCCEEEEEeCC
Confidence            9999999999987744

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.54  E-value=3.6e-14  Score=110.99  Aligned_cols=86  Identities=30%  Similarity=0.350  Sum_probs=73.7

Q ss_pred             EEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChHH
Q psy7830         139 LDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTE  215 (364)
Q Consensus       139 LDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~  215 (364)
                      ||+|||+|..+..+++.   +|+++|+++.+++.++++...        .++.+..+|+..++.++++||+|+++..+++
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~--------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~   72 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN--------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHH   72 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT--------STEEEEESBTTSSSS-TT-EEEEEEESHGGG
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc--------cCchheeehHHhCccccccccccccccceee
Confidence            89999999999999887   999999999999999998755        3577999999999888899999999988865


Q ss_pred             ------HHHHHHhccCCCcEEEE
Q psy7830         216 ------VSKTILSQLKPNGRIVA  232 (364)
Q Consensus       216 ------l~~~l~~~LkpGG~Lvi  232 (364)
                            +++++.++|||||++++
T Consensus        73 ~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   73 LEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             SSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccCHHHHHHHHHHHcCcCeEEeC
Confidence                  57899999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.54  E-value=9.8e-14  Score=122.10  Aligned_cols=110  Identities=22%  Similarity=0.299  Sum_probs=88.4

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR  195 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~  195 (364)
                      .+..+++.+..  .++.+|||+|||+|.++..+++.    +|+++|+++.+++.+++|+..+.     ..+++++..|..
T Consensus        19 ~t~lL~~~l~~--~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~-----~~~v~~~~~d~~   91 (170)
T PF05175_consen   19 GTRLLLDNLPK--HKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNG-----LENVEVVQSDLF   91 (170)
T ss_dssp             HHHHHHHHHHH--HTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTT-----CTTEEEEESSTT
T ss_pred             HHHHHHHHHhh--ccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC-----cccccccccccc
Confidence            34567777774  37889999999999999999987    69999999999999999999844     345999999987


Q ss_pred             CCCCCCCCeeEEEEccChH-----------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         196 WGHAEGGPYDVIFFGAGTT-----------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       196 ~~~~~~~~fD~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      .... .++||+|++|.+++           .+.....+.|||||.+++.....
T Consensus        92 ~~~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~  143 (170)
T PF05175_consen   92 EALP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH  143 (170)
T ss_dssp             TTCC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             cccc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence            6554 57899999998763           35678899999999998766543

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.52  E-value=1.5e-13  Score=126.45  Aligned_cols=108  Identities=17%  Similarity=0.242  Sum_probs=88.3

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      ..++..+.  ++++.+|||+|||+|..+..+++.     +|+++|+++.+++.+++++...     +.++++++.+|+..
T Consensus        35 ~~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~v~~~~~d~~~  107 (231)
T TIGR02752        35 KDTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA-----GLHNVELVHGNAME  107 (231)
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc-----CCCceEEEEechhc
Confidence            44555554  678999999999999999888754     8999999999999999998762     24689999999987


Q ss_pred             CCCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830         197 GHAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       197 ~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      .....++||+|+++..+++      +++++.+.|+|||++++....
T Consensus       108 ~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~  153 (231)
T TIGR02752       108 LPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETS  153 (231)
T ss_pred             CCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECC
Confidence            6655678999998766543      678899999999999876543

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.52  E-value=3.8e-14  Score=142.15  Aligned_cols=175  Identities=21%  Similarity=0.178  Sum_probs=121.1

Q ss_pred             eeeccCCCccchhhhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCC--c--cccccCCCceecCCCccCh
Q psy7830          42 LRSEMYDEDNENEENFFYTRSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVK--P--KFGFCDIPYAFANQVVMEP  117 (364)
Q Consensus        42 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~--~--~~~y~d~~l~ig~g~~~s~  117 (364)
                      ++.+++..++...|+|..+.+++++.+.|...|.-..+.     ...+-...++..  .  ...|.++.+.+++.+++  
T Consensus       162 ~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~G~~~iQd~~s~--  234 (427)
T PRK10901        162 ILAANNQRPPMWLRVNRRHHSRDAYLALLAEAGIEAFPH-----AVGPDAIRLETPVPVHQLPGFAEGWVSVQDAAAQ--  234 (427)
T ss_pred             HHHHcCCCCCeEEEEcCCCCCHHHHHHHHHhCCCceeec-----CCCCCeEEECCCCCcccCchhhCceEEEECHHHH--
Confidence            444555555666688988888888888887766321110     001111111111  0  03566676777765433  


Q ss_pred             HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830         118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD  193 (364)
Q Consensus       118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D  193 (364)
                        .   +...+.  +.+|++|||+|||+|..+..++..    +|+++|+++.+++.+++|+++     .+. +++++++|
T Consensus       235 --~---~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~-----~g~-~~~~~~~D  301 (427)
T PRK10901        235 --L---AATLLA--PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQR-----LGL-KATVIVGD  301 (427)
T ss_pred             --H---HHHHcC--CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH-----cCC-CeEEEEcC
Confidence              3   333444  678999999999999999998876    899999999999999999988     233 47899999


Q ss_pred             CCCCCC--CCCCeeEEEEccChH----------------------------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         194 ARWGHA--EGGPYDVIFFGAGTT----------------------------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       194 ~~~~~~--~~~~fD~Ii~~~~~~----------------------------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +.....  ..++||.|+++.++.                            .++..+.+.|||||++++++..
T Consensus       302 ~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs  374 (427)
T PRK10901        302 ARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS  374 (427)
T ss_pred             cccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            876432  245799999887652                            2567888999999999988854

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.52  E-value=3.2e-13  Score=120.43  Aligned_cols=114  Identities=24%  Similarity=0.322  Sum_probs=91.7

Q ss_pred             CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE
Q psy7830         112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL  187 (364)
Q Consensus       112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v  187 (364)
                      ...++.+.+.+.+++.+.  +.++.+|||+|||+|.++..+++.    +|+++|+++.+++.+++|+..+     +..++
T Consensus        11 ~~~~~~~~~r~~~~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~-----~~~~i   83 (187)
T PRK08287         11 KVPMTKEEVRALALSKLE--LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRF-----GCGNI   83 (187)
T ss_pred             CCCCchHHHHHHHHHhcC--CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh-----CCCCe
Confidence            344566666677777776  678899999999999999988875    8999999999999999998873     23579


Q ss_pred             EEEEcCCCCCCCCCCCeeEEEEccC---hHHHHHHHHhccCCCcEEEEEE
Q psy7830         188 EFILKDARWGHAEGGPYDVIFFGAG---TTEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       188 ~~~~~D~~~~~~~~~~fD~Ii~~~~---~~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      +++.+|.....  .++||+|+++..   +..+++.+.+.|+|||++++..
T Consensus        84 ~~~~~d~~~~~--~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~  131 (187)
T PRK08287         84 DIIPGEAPIEL--PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTF  131 (187)
T ss_pred             EEEecCchhhc--CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEE
Confidence            99999875322  357999998764   3457788999999999999865

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.51  E-value=1.3e-13  Score=122.58  Aligned_cols=99  Identities=21%  Similarity=0.165  Sum_probs=82.8

Q ss_pred             CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF  209 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~  209 (364)
                      ++.+|||+|||+|.++..++..    +|+++|+++.+++.+++++++     .+.++++++.+|+.+... .++||+|++
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~-----~~~~~i~~i~~d~~~~~~-~~~fD~I~s  115 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAE-----LGLNNVEIVNGRAEDFQH-EEQFDVITS  115 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH-----hCCCCeEEEecchhhccc-cCCccEEEe
Confidence            4889999999999999988754    899999999999999999887     334579999999987533 468999999


Q ss_pred             ccC--hHHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         210 GAG--TTEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       210 ~~~--~~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      +..  ...+.+.+.++|+|||++++..+...
T Consensus       116 ~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~  146 (181)
T TIGR00138       116 RALASLNVLLELTLNLLKVGGYFLAYKGKKY  146 (181)
T ss_pred             hhhhCHHHHHHHHHHhcCCCCEEEEEcCCCc
Confidence            862  24567888999999999999877654

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.51  E-value=1.1e-13  Score=129.62  Aligned_cols=131  Identities=25%  Similarity=0.176  Sum_probs=101.7

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCC-CEEEEEcCCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSK-TLEFILKDAR  195 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~-~v~~~~~D~~  195 (364)
                      ....+++.|.  +++|++|||||||.|.+++.+|+.   +|+|+++|++..+.+++++..     .+.. ++++...|..
T Consensus        60 k~~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~-----~gl~~~v~v~l~d~r  132 (283)
T COG2230          60 KLDLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAA-----RGLEDNVEVRLQDYR  132 (283)
T ss_pred             HHHHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHH-----cCCCcccEEEecccc
Confidence            4566666665  899999999999999999999998   999999999999999999888     3333 8999999987


Q ss_pred             CCCCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEcCCCcceEEEEEecCCCceeEEEeeceeEEe
Q psy7830         196 WGHAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRVSSDF  265 (364)
Q Consensus       196 ~~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~~~~~~l~~~~~~~~g~~~~~~l~~~~f~~  265 (364)
                      +..   ++||.|++...+++        .++.+.+.|+|||++++.......+...     ....+..+.+++..+.|
T Consensus       133 d~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-----~~~~~i~~yiFPgG~lP  202 (283)
T COG2230         133 DFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-----RFPDFIDKYIFPGGELP  202 (283)
T ss_pred             ccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-----cchHHHHHhCCCCCcCC
Confidence            664   45999999999876        5689999999999999877554321111     12234445556655555

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.50  E-value=2.4e-13  Score=122.47  Aligned_cols=103  Identities=17%  Similarity=0.127  Sum_probs=82.9

Q ss_pred             HHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC
Q psy7830         123 RCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE  200 (364)
Q Consensus       123 ~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~  200 (364)
                      .+++.+.  ..++.+|||+|||+|..+..+++.  +|+++|+|+.+++.+++++...     +..++++...|+..... 
T Consensus        21 ~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~-----~~~~v~~~~~d~~~~~~-   92 (197)
T PRK11207         21 EVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAE-----NLDNLHTAVVDLNNLTF-   92 (197)
T ss_pred             HHHHhcc--cCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc-----CCCcceEEecChhhCCc-
Confidence            3445544  456789999999999999999988  9999999999999999988772     23578899999876544 


Q ss_pred             CCCeeEEEEccChH--------HHHHHHHhccCCCcEEEEE
Q psy7830         201 GGPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~  233 (364)
                      .++||+|+++..++        .++..+.++|||||++++.
T Consensus        93 ~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207         93 DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            35799999987754        3567999999999996553

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.50  E-value=2.1e-13  Score=128.26  Aligned_cols=108  Identities=20%  Similarity=0.180  Sum_probs=88.6

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      .+..+++.+.  +.++.+|||+|||+|..+..++..   +|+++|+++.+++.++++...       ..++.+..+|+..
T Consensus        40 ~~~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-------~~~i~~~~~D~~~  110 (263)
T PTZ00098         40 ATTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-------KNKIEFEANDILK  110 (263)
T ss_pred             HHHHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-------CCceEEEECCccc
Confidence            4566777765  789999999999999999888765   999999999999999988643       2479999999887


Q ss_pred             CCCCCCCeeEEEEccChH--------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         197 GHAEGGPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       197 ~~~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      .+..+++||+|++...+.        .+++++.++|||||++++....
T Consensus       111 ~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~  158 (263)
T PTZ00098        111 KDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC  158 (263)
T ss_pred             CCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            665567899999865432        3678999999999999987643

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.50  E-value=3.4e-14  Score=128.94  Aligned_cols=100  Identities=19%  Similarity=0.191  Sum_probs=86.4

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEc
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFG  210 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~  210 (364)
                      -+|.+|||+|||-|.++..+|+.  +|+|+|+++.+++.|+..+..+.      -++.+.+..++++....++||+|+|.
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~g------v~i~y~~~~~edl~~~~~~FDvV~cm  131 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESG------VNIDYRQATVEDLASAGGQFDVVTCM  131 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcc------ccccchhhhHHHHHhcCCCccEEEEh
Confidence            37999999999999999999999  99999999999999999887732      14667777777666555799999999


Q ss_pred             cChHH------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830         211 AGTTE------VSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       211 ~~~~~------l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      -+++|      ++..+.+++||||.++++..+..
T Consensus       132 EVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt  165 (243)
T COG2227         132 EVLEHVPDPESFLRACAKLVKPGGILFLSTINRT  165 (243)
T ss_pred             hHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence            98887      56789999999999999998865

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.50  E-value=6.6e-14  Score=141.15  Aligned_cols=174  Identities=19%  Similarity=0.164  Sum_probs=118.6

Q ss_pred             cCCCccchhhhcccHHHHHHHHHHHHHcCCCCCHH-HHHHHHhCCCCCccCCCccccccCCCceecCCCccChHHHHHHH
Q psy7830          46 MYDEDNENEENFFYTRSYADFLEGLKERKLLNHPR-VEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARC  124 (364)
Q Consensus        46 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~a~~~v~R~~~~p~~~~~~y~d~~l~ig~g~~~s~P~~~a~~  124 (364)
                      ++..+....|+|..+.+++.+.+.|.+.|....+. |..-...++...+...   ..|.++.+.+++.++.    ++   
T Consensus       173 ~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~G~~~~qd~~s~----lv---  242 (444)
T PRK14902        173 LNEPPKASIRVNTLKISVEELIEKLEEEGYEVEESLLSPEALVIEKGNIAGT---DLFKDGLITIQDESSM----LV---  242 (444)
T ss_pred             cCCCCCeEEEEcCCCCCHHHHHHHHHHcCceeEEcCCCCCeEEEeCCCcccC---hHHhCceEEEEChHHH----HH---
Confidence            33344445588888777788888887776321111 1100011111111111   3567777777765433    33   


Q ss_pred             HHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC
Q psy7830         125 LEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA  199 (364)
Q Consensus       125 l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~  199 (364)
                      ...+.  +.++.+|||+|||+|..+..+++.     +|+++|+++.+++.+++|+++     .+..+++++.+|+.....
T Consensus       243 ~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~-----~g~~~v~~~~~D~~~~~~  315 (444)
T PRK14902        243 APALD--PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKR-----LGLTNIETKALDARKVHE  315 (444)
T ss_pred             HHHhC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-----cCCCeEEEEeCCcccccc
Confidence            33333  578899999999999999988874     899999999999999999988     334579999999876532


Q ss_pred             C-CCCeeEEEEccChH----------------------------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         200 E-GGPYDVIFFGAGTT----------------------------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       200 ~-~~~fD~Ii~~~~~~----------------------------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      . .++||+|+++.++.                            .++..+.+.|||||+|+.++..
T Consensus       316 ~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs  381 (444)
T PRK14902        316 KFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT  381 (444)
T ss_pred             hhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence            1 25799999987642                            2567888999999999987654

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.50  E-value=1.8e-13  Score=131.84  Aligned_cols=102  Identities=18%  Similarity=0.246  Sum_probs=86.1

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEc
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFG  210 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~  210 (364)
                      .++.+|||||||+|.++..+++.  +|+|+|+++++++.|+++.....   . ..+++++++|+.+....+++||+|++.
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~---~-~~~i~~~~~dae~l~~~~~~FD~Vi~~  205 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDP---V-TSTIEYLCTTAEKLADEGRKFDAVLSL  205 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---c-ccceeEEecCHHHhhhccCCCCEEEEh
Confidence            46789999999999999999887  99999999999999998865421   1 247999999988766556789999998


Q ss_pred             cChHH------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830         211 AGTTE------VSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       211 ~~~~~------l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      .+++|      +++++.++|||||.+++.+.+..
T Consensus       206 ~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~  239 (322)
T PLN02396        206 EVIEHVANPAEFCKSLSALTIPNGATVLSTINRT  239 (322)
T ss_pred             hHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence            88876      57899999999999999987653

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.49  E-value=1.4e-13  Score=128.85  Aligned_cols=101  Identities=18%  Similarity=0.148  Sum_probs=83.5

Q ss_pred             HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      ...+++.+.  ..++.+|||+|||+|.++..+++.    +|+|+|+|+.|++.|+++            +++++.+|+..
T Consensus        18 ~~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~~   83 (255)
T PRK14103         18 FYDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------------GVDARTGDVRD   83 (255)
T ss_pred             HHHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------------CCcEEEcChhh
Confidence            355666665  567899999999999999998875    899999999999998652            57788999876


Q ss_pred             CCCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830         197 GHAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       197 ~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      .. ..++||+|+++..+++      +++++.+.|||||++++.+..
T Consensus        84 ~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~  128 (255)
T PRK14103         84 WK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPG  128 (255)
T ss_pred             CC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence            64 3578999999998876      467899999999999998654

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.49  E-value=7e-14  Score=140.27  Aligned_cols=178  Identities=19%  Similarity=0.126  Sum_probs=120.2

Q ss_pred             eeeccCCCccchhhhcccHHHHHHHHHHHHHcCCCCCHH-H-HHHHHhCCCC-CccCCCccccccCCCceecCCCccChH
Q psy7830          42 LRSEMYDEDNENEENFFYTRSYADFLEGLKERKLLNHPR-V-EEAFYAVRRA-DFINVKPKFGFCDIPYAFANQVVMEPP  118 (364)
Q Consensus        42 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~-~~a~~~v~R~-~~~p~~~~~~y~d~~l~ig~g~~~s~P  118 (364)
                      ++.+++..+....|+|+.+.+++++.+.+.+.|....+. + -..+. ++.. .+...   ..|.++.+.+++.+++   
T Consensus       156 ~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~G~~~~Qd~~s~---  228 (426)
T TIGR00563       156 ICEANNQRPPMWLRINRTKHSRDEWLALLAEAGMKGFPHDLAPDAVR-LETPAAVHAL---PGFEEGWVTVQDASAQ---  228 (426)
T ss_pred             HHHHhCCCCCeEEEEcCCcCCHHHHHHHHHhcCCceeeCCCCCCeEE-ECCCCCcccC---chhhCCeEEEECHHHH---
Confidence            444555556666799999888888888887777432211 0 00110 1100 01000   3566777777765433   


Q ss_pred             HHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCC-CEEEEEcC
Q psy7830         119 SYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSK-TLEFILKD  193 (364)
Q Consensus       119 ~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~-~v~~~~~D  193 (364)
                          .+...+.  +.+|.+|||+|||+|+.+..+++.    +|+++|+++.+++.+++|+++.     +.. ++.+..+|
T Consensus       229 ----~~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~-----g~~~~v~~~~~d  297 (426)
T TIGR00563       229 ----WVATWLA--PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRL-----GLTIKAETKDGD  297 (426)
T ss_pred             ----HHHHHhC--CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHc-----CCCeEEEEeccc
Confidence                3344444  678999999999999999998875    8999999999999999999882     223 34446667


Q ss_pred             CCCCCC--CCCCeeEEEEccChH----------------------------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         194 ARWGHA--EGGPYDVIFFGAGTT----------------------------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       194 ~~~~~~--~~~~fD~Ii~~~~~~----------------------------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ......  ..++||.|+++.+|.                            .++.++.+.|||||+|++++-+-
T Consensus       298 ~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~  371 (426)
T TIGR00563       298 GRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV  371 (426)
T ss_pred             cccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            654332  346799999876542                            25678889999999999988653

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.48  E-value=1.3e-13  Score=139.03  Aligned_cols=185  Identities=21%  Similarity=0.079  Sum_probs=123.0

Q ss_pred             CCCCCCcceeeccCCC-------------ccchhhhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCccc
Q psy7830          34 MPIEPPPDLRSEMYDE-------------DNENEENFFYTRSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKF  100 (364)
Q Consensus        34 ~~~~w~~~~~~~l~~~-------------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~~~~  100 (364)
                      ..|.|-..++...|+.             +....|+|..+.+++++.+.+...|....+.-...+ .+.. .+...  ..
T Consensus       150 s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~-~~~~~--~~  225 (445)
T PRK14904        150 SHPEWLLERWIARYGEERTEAMLSYNNQAPLFGFRINRLKTTPEKFLAAPADASVTFEKSGLPNF-FLSK-DFSLF--EP  225 (445)
T ss_pred             CCCHHHHHHHHHHhChHHHHHHHHHhCCCCCceeEeCCCCCCHHHHHHHHHhCCCceEEcCcceE-EEec-ccccc--Ch
Confidence            4566766666665553             333458888877888888877666532111000000 0110 01100  02


Q ss_pred             cccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHH
Q psy7830         101 GFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIK  175 (364)
Q Consensus       101 ~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~  175 (364)
                      .|.++.+.+++.++       ......+.  +.+|.+|||+|||+|+.+..++..     +|+++|+++.+++.+++|++
T Consensus       226 ~~~~G~~~vqd~~s-------~l~~~~l~--~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~  296 (445)
T PRK14904        226 FLKLGLVSVQNPTQ-------ALACLLLN--PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHAS  296 (445)
T ss_pred             HHhCcEEEEeCHHH-------HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHH
Confidence            44555555544322       23333443  578999999999999999888764     89999999999999999998


Q ss_pred             hcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChH----------------------------HHHHHHHhccCCC
Q psy7830         176 ISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTT----------------------------EVSKTILSQLKPN  227 (364)
Q Consensus       176 ~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~----------------------------~l~~~l~~~LkpG  227 (364)
                      +     .+..+++++++|+..... .++||+|+++.+|.                            .++..+.+.||||
T Consensus       297 ~-----~g~~~v~~~~~Da~~~~~-~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg  370 (445)
T PRK14904        297 A-----LGITIIETIEGDARSFSP-EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPG  370 (445)
T ss_pred             H-----hCCCeEEEEeCccccccc-CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            8     344689999999877643 46899999876541                            2567888999999


Q ss_pred             cEEEEEEcCC
Q psy7830         228 GRIVAPVGNV  237 (364)
Q Consensus       228 G~Lvi~~~~~  237 (364)
                      |+|++++.+-
T Consensus       371 G~lvystcs~  380 (445)
T PRK14904        371 GVLVYATCSI  380 (445)
T ss_pred             cEEEEEeCCC
Confidence            9999988664

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.47  E-value=4e-13  Score=125.67  Aligned_cols=104  Identities=19%  Similarity=0.204  Sum_probs=85.7

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR  195 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~  195 (364)
                      ....+++.+.  +.++.+|||+|||+|.++..++..    +|+++|+++.+++.++++.          +++.++.+|+.
T Consensus        19 ~~~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----------~~~~~~~~d~~   86 (258)
T PRK01683         19 PARDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----------PDCQFVEADIA   86 (258)
T ss_pred             HHHHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC----------CCCeEEECchh
Confidence            3455566554  567899999999999999988875    8999999999999998864          36888999987


Q ss_pred             CCCCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830         196 WGHAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       196 ~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      .... ..+||+|+++..+++      +++++.+.|||||.+++.+..
T Consensus        87 ~~~~-~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~  132 (258)
T PRK01683         87 SWQP-PQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPD  132 (258)
T ss_pred             ccCC-CCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence            6543 458999999988865      578999999999999997644

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.47  E-value=5.4e-13  Score=124.88  Aligned_cols=101  Identities=27%  Similarity=0.269  Sum_probs=84.2

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC-CCCCCeeEEEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH-AEGGPYDVIFF  209 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~-~~~~~fD~Ii~  209 (364)
                      .++.+|||+|||+|.++..+++.  +|+++|+++.|++.|++++....   + .++++++++|+.+.. ...++||+|++
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g---~-~~~v~~~~~d~~~l~~~~~~~fD~V~~  118 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKG---V-SDNMQFIHCAAQDIAQHLETPVDLILF  118 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC---C-ccceEEEEcCHHHHhhhcCCCCCEEEe
Confidence            45789999999999999999988  99999999999999999987621   1 247999999987653 23468999999


Q ss_pred             ccChHH------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         210 GAGTTE------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       210 ~~~~~~------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +.++++      ++.++.++|||||++++...+.
T Consensus       119 ~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~  152 (255)
T PRK11036        119 HAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNA  152 (255)
T ss_pred             hhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence            988765      4689999999999999876554

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.46  E-value=1e-12  Score=124.91  Aligned_cols=132  Identities=21%  Similarity=0.288  Sum_probs=99.6

Q ss_pred             cccCCCceecCCCccChHHHHHHHHHHHhccC--CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHH
Q psy7830         101 GFCDIPYAFANQVVMEPPSYIARCLEQLVDHL--QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNI  174 (364)
Q Consensus       101 ~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l--~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~  174 (364)
                      .|....+.++.+..+.+|.+...+...+...+  .++.+|||+|||+|.++..+++.    +|+++|+|+.+++.|++|+
T Consensus        86 ~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~  165 (284)
T TIGR03533        86 WFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINI  165 (284)
T ss_pred             eecCcEEEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence            34455667777888877766555544443222  34679999999999999999875    8999999999999999999


Q ss_pred             HhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccCh-------------------------------HHHHHHHHhc
Q psy7830         175 KISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGT-------------------------------TEVSKTILSQ  223 (364)
Q Consensus       175 ~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~-------------------------------~~l~~~l~~~  223 (364)
                      ..+.   + ..+++++.+|+..... ..+||+|++|.++                               ..++..+.+.
T Consensus       166 ~~~~---~-~~~i~~~~~D~~~~~~-~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~  240 (284)
T TIGR03533       166 ERHG---L-EDRVTLIQSDLFAALP-GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADH  240 (284)
T ss_pred             HHcC---C-CCcEEEEECchhhccC-CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence            8732   2 1479999999865432 3579999998543                               1245677889


Q ss_pred             cCCCcEEEEEEcCC
Q psy7830         224 LKPNGRIVAPVGNV  237 (364)
Q Consensus       224 LkpGG~Lvi~~~~~  237 (364)
                      |+|||++++.++..
T Consensus       241 L~~gG~l~~e~g~~  254 (284)
T TIGR03533       241 LNENGVLVVEVGNS  254 (284)
T ss_pred             cCCCCEEEEEECcC
Confidence            99999999988753

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.46  E-value=1.6e-13  Score=122.07  Aligned_cols=96  Identities=22%  Similarity=0.256  Sum_probs=85.4

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      +.+-.+|.|+|||+|..|..++++    .|+|+|-|++|++.|++++          ++++|..+|+....+ ..++|++
T Consensus        28 ~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl----------p~~~f~~aDl~~w~p-~~~~dll   96 (257)
T COG4106          28 LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL----------PDATFEEADLRTWKP-EQPTDLL   96 (257)
T ss_pred             ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC----------CCCceecccHhhcCC-CCccchh
Confidence            456789999999999999999998    9999999999999998765          689999999988765 4689999


Q ss_pred             EEccChHH------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830         208 FFGAGTTE------VSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       208 i~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      ++|.++++      ++..+...|.|||.|.+.+++..
T Consensus        97 faNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~  133 (257)
T COG4106          97 FANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNL  133 (257)
T ss_pred             hhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCcc
Confidence            99999987      56789999999999999998754

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.46  E-value=8e-13  Score=123.21  Aligned_cols=109  Identities=16%  Similarity=0.150  Sum_probs=85.4

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHc---c---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEW---L---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD  193 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~---~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D  193 (364)
                      +...+...+...+.++.+|||+|||+|..+..+++   .   +|+++|+|+.|++.|++++....   . ..+++++++|
T Consensus        42 ~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~---~-~~~v~~~~~d  117 (247)
T PRK15451         42 IISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK---A-PTPVDVIEGD  117 (247)
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC---C-CCCeEEEeCC
Confidence            33333334443457889999999999999988775   1   99999999999999999987621   1 2479999999


Q ss_pred             CCCCCCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEE
Q psy7830         194 ARWGHAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       194 ~~~~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~  234 (364)
                      +...+.  ..+|+|+++..+++        +++++.+.|||||.+++..
T Consensus       118 ~~~~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e  164 (247)
T PRK15451        118 IRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE  164 (247)
T ss_pred             hhhCCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            887654  35899998876643        6789999999999999875

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.45  E-value=8.9e-13  Score=118.78  Aligned_cols=117  Identities=24%  Similarity=0.266  Sum_probs=91.6

Q ss_pred             ccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEE
Q psy7830         114 VMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLE  188 (364)
Q Consensus       114 ~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~  188 (364)
                      .++...+.+..+..+.  +.++.+|||+|||+|.++..+++.     +|+++|+++.+++.+++|+..+.   + ..++.
T Consensus        22 ~~t~~~~r~~~l~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g---~-~~~v~   95 (198)
T PRK00377         22 PMTKEEIRALALSKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG---V-LNNIV   95 (198)
T ss_pred             CCCHHHHHHHHHHHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC---C-CCCeE
Confidence            3555556566666665  789999999999999999887653     89999999999999999988721   1 35899


Q ss_pred             EEEcCCCCCCCC-CCCeeEEEEccC---hHHHHHHHHhccCCCcEEEEEEcC
Q psy7830         189 FILKDARWGHAE-GGPYDVIFFGAG---TTEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       189 ~~~~D~~~~~~~-~~~fD~Ii~~~~---~~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ++.+|..+.... .+.||.|+++..   ...+++.+.+.|||||++++....
T Consensus        96 ~~~~d~~~~l~~~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  147 (198)
T PRK00377         96 LIKGEAPEILFTINEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAIL  147 (198)
T ss_pred             EEEechhhhHhhcCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeec
Confidence            999998754322 357999999654   456788999999999999986543

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.45  E-value=4.8e-13  Score=126.28  Aligned_cols=107  Identities=29%  Similarity=0.271  Sum_probs=81.8

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      .+..+++.+.  +++|++|||||||.|.++..+++.   +|+|+.+|++..+.+++++.+..   + .+++++...|..+
T Consensus        50 k~~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~g---l-~~~v~v~~~D~~~  123 (273)
T PF02353_consen   50 KLDLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAG---L-EDRVEVRLQDYRD  123 (273)
T ss_dssp             HHHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCST---S-SSTEEEEES-GGG
T ss_pred             HHHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcC---C-CCceEEEEeeccc
Confidence            4555666665  789999999999999999999988   99999999999999999998822   2 2479999999876


Q ss_pred             CCCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEc
Q psy7830         197 GHAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       197 ~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      ..   .+||.|++...+++        +++.+.++|||||++++...
T Consensus       124 ~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i  167 (273)
T PF02353_consen  124 LP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTI  167 (273)
T ss_dssp             ------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred             cC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEec
Confidence            53   38999999877765        57899999999999998653

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.45  E-value=7.4e-13  Score=119.10  Aligned_cols=103  Identities=17%  Similarity=0.138  Sum_probs=80.6

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA  199 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~  199 (364)
                      ..+++.+.  ..++.+|||+|||+|.++..+++.  +|+++|+|+.+++.+++++..+.     . ++.+...|+.....
T Consensus        20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~-----~-~v~~~~~d~~~~~~   91 (195)
T TIGR00477        20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKAREN-----L-PLRTDAYDINAAAL   91 (195)
T ss_pred             HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhC-----C-CceeEeccchhccc
Confidence            45555554  445679999999999999999988  99999999999999999876622     2 47777788754433


Q ss_pred             CCCCeeEEEEccChH--------HHHHHHHhccCCCcEEEEE
Q psy7830         200 EGGPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       200 ~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~  233 (364)
                       .++||+|+++..++        .+++.+.+.|||||++++.
T Consensus        92 -~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477        92 -NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             -cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence             35799999876653        3667999999999996654

Part of a tellurite-reducing operon tehA and tehB

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.45  E-value=1.6e-12  Score=116.85  Aligned_cols=119  Identities=23%  Similarity=0.249  Sum_probs=92.3

Q ss_pred             CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE
Q psy7830         112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL  187 (364)
Q Consensus       112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v  187 (364)
                      |..++++.+-..+++.+.  +.++.+|||+|||+|.++..+++.    +|+++|+++.+++.+++|++.     .+..++
T Consensus        20 ~~p~t~~~v~~~l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~-----~~~~~v   92 (196)
T PRK07402         20 GIPLTKREVRLLLISQLR--LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDR-----FGVKNV   92 (196)
T ss_pred             CCCCCHHHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-----hCCCCe
Confidence            445666666666777775  678999999999999999988754    899999999999999999987     334589


Q ss_pred             EEEEcCCCCCCCC-CCCeeEEEEcc--ChHHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         188 EFILKDARWGHAE-GGPYDVIFFGA--GTTEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       188 ~~~~~D~~~~~~~-~~~fD~Ii~~~--~~~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +++.+|+...... ...+|.|+...  ....+++.+.+.|+|||++++.....
T Consensus        93 ~~~~~d~~~~~~~~~~~~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  145 (196)
T PRK07402         93 EVIEGSAPECLAQLAPAPDRVCIEGGRPIKEILQAVWQYLKPGGRLVATASSL  145 (196)
T ss_pred             EEEECchHHHHhhCCCCCCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence            9999998642211 13467776643  34578899999999999999987654

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.44  E-value=9.5e-13  Score=124.21  Aligned_cols=98  Identities=27%  Similarity=0.322  Sum_probs=83.1

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDV  206 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~  206 (364)
                      ++++.+|||+|||+|..+..+++.     +|+++|+++.+++.|+++...     .+..++++..+|+...+..+++||+
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~-----~g~~~v~~~~~d~~~l~~~~~~fD~  149 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARK-----AGYTNVEFRLGEIEALPVADNSVDV  149 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHH-----cCCCCEEEEEcchhhCCCCCCceeE
Confidence            678999999999999988766654     699999999999999999877     3346899999999876655678999


Q ss_pred             EEEccCh------HHHHHHHHhccCCCcEEEEEE
Q psy7830         207 IFFGAGT------TEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       207 Ii~~~~~------~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      |+++..+      ..+++++.++|||||+++++.
T Consensus       150 Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~  183 (272)
T PRK11873        150 IISNCVINLSPDKERVFKEAFRVLKPGGRFAISD  183 (272)
T ss_pred             EEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            9998754      347889999999999999864

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.43  E-value=2.1e-12  Score=125.39  Aligned_cols=116  Identities=16%  Similarity=0.073  Sum_probs=95.3

Q ss_pred             cChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830         115 MEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK  192 (364)
Q Consensus       115 ~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~  192 (364)
                      ...|.+...++....  +++|++|||+|||+|.+++.++..  +++|+|+++.|++.+++|++.     .+..++.+..+
T Consensus       165 ~l~~~la~~~~~l~~--~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~-----~g~~~i~~~~~  237 (329)
T TIGR01177       165 SMDPKLARAMVNLAR--VTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEH-----YGIEDFFVKRG  237 (329)
T ss_pred             CCCHHHHHHHHHHhC--CCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHH-----hCCCCCeEEec
Confidence            346667677766654  688999999999999999887766  999999999999999999987     33456889999


Q ss_pred             CCCCCCCCCCCeeEEEEccCh---------------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         193 DARWGHAEGGPYDVIFFGAGT---------------TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       193 D~~~~~~~~~~fD~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      |+.+.+...++||+|++|.++               ..++..+.+.|||||++++.+.+.
T Consensus       238 D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~  297 (329)
T TIGR01177       238 DATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR  297 (329)
T ss_pred             chhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence            998876555789999998653               346788899999999999988764

This family is found exclusively in the Archaea.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.41  E-value=1.1e-12  Score=118.58  Aligned_cols=101  Identities=20%  Similarity=0.193  Sum_probs=83.0

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC-CCCC--CCCCCee
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA-RWGH--AEGGPYD  205 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~-~~~~--~~~~~fD  205 (364)
                      .++.+|||+|||+|..+..+++.    +|+++|+++.+++.+++++..+     +.++++++++|+ ....  ...++||
T Consensus        39 ~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~-----~~~~v~~~~~d~~~~l~~~~~~~~~D  113 (202)
T PRK00121         39 NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE-----GLTNLRLLCGDAVEVLLDMFPDGSLD  113 (202)
T ss_pred             CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc-----CCCCEEEEecCHHHHHHHHcCccccc
Confidence            46789999999999999998875    8999999999999999998773     236899999998 5433  3356899


Q ss_pred             EEEEccCh--------------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         206 VIFFGAGT--------------TEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       206 ~Ii~~~~~--------------~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      +|+++.+.              ..+++++.+.|||||++++......
T Consensus       114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~  160 (202)
T PRK00121        114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG  160 (202)
T ss_pred             eEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH
Confidence            99987542              3478999999999999999876543

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.41  E-value=2.9e-12  Score=123.12  Aligned_cols=132  Identities=21%  Similarity=0.298  Sum_probs=98.7

Q ss_pred             cccCCCceecCCCccChHHHHHHHHHHHhccCC--CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHH
Q psy7830         101 GFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQ--NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNI  174 (364)
Q Consensus       101 ~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~--~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~  174 (364)
                      .|....+.++.+..+++|.+...+...+...++  +..+|||+|||+|.++..++..    +|+++|+|+.+++.|++|+
T Consensus        98 ~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~  177 (307)
T PRK11805         98 WFCGLEFYVDERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINI  177 (307)
T ss_pred             eEcCcEEEECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH
Confidence            344556667777777777765555544432222  2368999999999999998875    8999999999999999999


Q ss_pred             HhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccCh-------------------------------HHHHHHHHhc
Q psy7830         175 KISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGT-------------------------------TEVSKTILSQ  223 (364)
Q Consensus       175 ~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~-------------------------------~~l~~~l~~~  223 (364)
                      ..+.   + ..+++++.+|+.+..+ .++||+|++|.++                               ..++..+.+.
T Consensus       178 ~~~~---l-~~~i~~~~~D~~~~l~-~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~  252 (307)
T PRK11805        178 ERHG---L-EDRVTLIESDLFAALP-GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDY  252 (307)
T ss_pred             HHhC---C-CCcEEEEECchhhhCC-CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHh
Confidence            8732   2 1469999999865433 3579999998543                               1245778889


Q ss_pred             cCCCcEEEEEEcCC
Q psy7830         224 LKPNGRIVAPVGNV  237 (364)
Q Consensus       224 LkpGG~Lvi~~~~~  237 (364)
                      |+|||++++.++..
T Consensus       253 L~pgG~l~~E~g~~  266 (307)
T PRK11805        253 LTEDGVLVVEVGNS  266 (307)
T ss_pred             cCCCCEEEEEECcC
Confidence            99999999988764

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.41  E-value=1.9e-12  Score=131.59  Aligned_cols=109  Identities=20%  Similarity=0.220  Sum_probs=89.3

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      .+..+++.+.  +.++.+|||+|||+|..+..+++.   +|+|+|+|+.+++.|+++...     . ..++++..+|+..
T Consensus       254 ~te~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~-----~-~~~v~~~~~d~~~  325 (475)
T PLN02336        254 TTKEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIG-----R-KCSVEFEVADCTK  325 (475)
T ss_pred             HHHHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhc-----C-CCceEEEEcCccc
Confidence            3455666665  577899999999999999888875   899999999999999988754     1 1479999999887


Q ss_pred             CCCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830         197 GHAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       197 ~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ....+++||+|++...+.+      +++++.+.|||||++++....
T Consensus       326 ~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  371 (475)
T PLN02336        326 KTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYC  371 (475)
T ss_pred             CCCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence            6655578999999877654      678999999999999987643

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.41  E-value=3.6e-12  Score=125.64  Aligned_cols=140  Identities=19%  Similarity=0.187  Sum_probs=105.3

Q ss_pred             CccCCCcc---ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCH
Q psy7830          92 DFINVKPK---FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLP  164 (364)
Q Consensus        92 ~~~p~~~~---~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~  164 (364)
                      .-.|-.|-   ..|.+..+.+..+..+.+|.+ ..+++.+...+.++.+|||+|||+|.++..+++.    +|+++|+|+
T Consensus       207 ~gePlqYIlG~~~F~G~~f~V~p~vLIPRpeT-E~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~  285 (423)
T PRK14966        207 NGEPVAYILGVREFYGRRFAVNPNVLIPRPET-EHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISP  285 (423)
T ss_pred             cCCCceeEeeeeeecCcEEEeCCCccCCCccH-HHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCH
Confidence            44455442   456677778888888888876 4455555444567789999999999999988754    899999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC-CCCCCeeEEEEccChH-----------------------------
Q psy7830         165 ETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH-AEGGPYDVIFFGAGTT-----------------------------  214 (364)
Q Consensus       165 ~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~-~~~~~fD~Ii~~~~~~-----------------------------  214 (364)
                      .+++.|++|++.+.      .+++++.+|..+.. +..++||+|++|.+.-                             
T Consensus       286 ~ALe~AreNa~~~g------~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~  359 (423)
T PRK14966        286 PALETARKNAADLG------ARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSC  359 (423)
T ss_pred             HHHHHHHHHHHHcC------CcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHH
Confidence            99999999998732      37999999986532 2235799999987651                             


Q ss_pred             --HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         215 --EVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       215 --~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                        .+.+.+.+.|+|||.+++.++...
T Consensus       360 yr~Ii~~a~~~LkpgG~lilEiG~~Q  385 (423)
T PRK14966        360 IRTLAQGAPDRLAEGGFLLLEHGFDQ  385 (423)
T ss_pred             HHHHHHHHHHhcCCCcEEEEEECccH
Confidence              134566789999999999887753

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.41  E-value=2.5e-12  Score=126.22  Aligned_cols=109  Identities=17%  Similarity=0.174  Sum_probs=86.4

Q ss_pred             HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCC-CCCEEEEEcCCC
Q psy7830         121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQ-SKTLEFILKDAR  195 (364)
Q Consensus       121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~-~~~v~~~~~D~~  195 (364)
                      +..+++.+..  ..+.+|||+|||+|.+++.+++.    +|+++|+|+.+++.+++|++.+.   .. ..++++...|+.
T Consensus       217 trllL~~lp~--~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~---~~~~~~v~~~~~D~l  291 (378)
T PRK15001        217 ARFFMQHLPE--NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNM---PEALDRCEFMINNAL  291 (378)
T ss_pred             HHHHHHhCCc--ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---cccCceEEEEEcccc
Confidence            3556666652  33569999999999999999876    99999999999999999998743   11 247899999986


Q ss_pred             CCCCCCCCeeEEEEccChH-----------HHHHHHHhccCCCcEEEEEEc
Q psy7830         196 WGHAEGGPYDVIFFGAGTT-----------EVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       196 ~~~~~~~~fD~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      .... ..+||+|++|.+++           .++..+.+.|+|||.|++...
T Consensus       292 ~~~~-~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n  341 (378)
T PRK15001        292 SGVE-PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN  341 (378)
T ss_pred             ccCC-CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence            5432 35899999998864           256788899999999998763

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.40  E-value=4.4e-12  Score=112.33  Aligned_cols=105  Identities=22%  Similarity=0.280  Sum_probs=83.9

Q ss_pred             HHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC
Q psy7830         123 RCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE  200 (364)
Q Consensus       123 ~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~  200 (364)
                      .+.+.+.  ..++.+|||+|||+|.++..++..  +|+++|+++.+++.+++|+..+.      .+++++.+|.....  
T Consensus        10 ~l~~~l~--~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~--   79 (179)
T TIGR00537        10 LLEANLR--ELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNN------VGLDVVMTDLFKGV--   79 (179)
T ss_pred             HHHHHHH--hcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcC------CceEEEEccccccc--
Confidence            3444444  356689999999999999999988  79999999999999999987732      26889999986643  


Q ss_pred             CCCeeEEEEccCh---------------------------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         201 GGPYDVIFFGAGT---------------------------TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       201 ~~~fD~Ii~~~~~---------------------------~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      .++||+|++|.++                           ..+++++.++|||||++++.....
T Consensus        80 ~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~  143 (179)
T TIGR00537        80 RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL  143 (179)
T ss_pred             CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence            3589999998664                           235678889999999999876543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.40  E-value=5.8e-13  Score=109.10  Aligned_cols=97  Identities=27%  Similarity=0.303  Sum_probs=79.5

Q ss_pred             CCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--CCCCCeeEEEE
Q psy7830         135 GSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH--AEGGPYDVIFF  209 (364)
Q Consensus       135 g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~--~~~~~fD~Ii~  209 (364)
                      |.+|||+|||+|.++..+++.   +++++|+++..++.+++++....   + .++++++++|..+..  ...++||+|++
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~---~-~~~~~~~~~D~~~~~~~~~~~~~D~Iv~   76 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNG---L-DDRVEVIVGDARDLPEPLPDGKFDLIVT   76 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCT---T-TTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHcc---C-CceEEEEECchhhchhhccCceeEEEEE
Confidence            568999999999999988876   99999999999999999998832   1 257999999987654  34578999999


Q ss_pred             ccChH--------------HHHHHHHhccCCCcEEEEEEc
Q psy7830         210 GAGTT--------------EVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       210 ~~~~~--------------~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      |.++.              .+++.+.++|||||.+++.++
T Consensus        77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            98764              257899999999999998764

...

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.39  E-value=3.5e-12  Score=123.34  Aligned_cols=104  Identities=23%  Similarity=0.167  Sum_probs=81.9

Q ss_pred             HHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCC-CCCEEEEEcCCCCCC
Q psy7830         123 RCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQ-SKTLEFILKDARWGH  198 (364)
Q Consensus       123 ~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~-~~~v~~~~~D~~~~~  198 (364)
                      .++..+.  ...|.+|||||||+|+++..++..   .|+|+|+|+.++..++.....     .+ ..++.++.+|+...+
T Consensus       113 ~l~~~l~--~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~-----~~~~~~i~~~~~d~e~lp  185 (322)
T PRK15068        113 RVLPHLS--PLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKL-----LGNDQRAHLLPLGIEQLP  185 (322)
T ss_pred             HHHHhhC--CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHh-----cCCCCCeEEEeCCHHHCC
Confidence            3344443  246889999999999999999876   799999999998765543222     11 247999999998776


Q ss_pred             CCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEE
Q psy7830         199 AEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       199 ~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~  234 (364)
                      . .++||+|++...++|      +++++++.|+|||.+++..
T Consensus       186 ~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        186 A-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             C-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            6 678999999877754      6789999999999999874

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.39  E-value=4.4e-12  Score=120.82  Aligned_cols=103  Identities=18%  Similarity=0.182  Sum_probs=81.6

Q ss_pred             HHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC
Q psy7830         123 RCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE  200 (364)
Q Consensus       123 ~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~  200 (364)
                      .+++.+.  ..++.+|||+|||+|..+..+++.  +|+|+|+|+.+++.+++++..+.     . ++++...|+..... 
T Consensus       111 ~~~~~~~--~~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~-----l-~v~~~~~D~~~~~~-  181 (287)
T PRK12335        111 EVLEAVQ--TVKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKEN-----L-NIRTGLYDINSASI-  181 (287)
T ss_pred             HHHHHhh--ccCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC-----C-ceEEEEechhcccc-
Confidence            3444443  233459999999999999999987  99999999999999999987732     3 78888888866544 


Q ss_pred             CCCeeEEEEccChH--------HHHHHHHhccCCCcEEEEEE
Q psy7830         201 GGPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      .++||+|+++..++        .+++++.+.|+|||++++..
T Consensus       182 ~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~  223 (287)
T PRK12335        182 QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC  223 (287)
T ss_pred             cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            56899999987654        35789999999999977643

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.39  E-value=4.7e-12  Score=116.11  Aligned_cols=109  Identities=22%  Similarity=0.227  Sum_probs=87.2

Q ss_pred             HHHHHHHHHhccC-CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC
Q psy7830         120 YIARCLEQLVDHL-QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA  194 (364)
Q Consensus       120 ~~a~~l~~L~~~l-~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~  194 (364)
                      +...+++.+.... ..+.+|||+|||+|.++..+++.    +++++|+++.+++.++++..         +++.++.+|+
T Consensus        19 ~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---------~~~~~~~~d~   89 (240)
T TIGR02072        19 MAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---------ENVQFICGDA   89 (240)
T ss_pred             HHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---------CCCeEEecch
Confidence            4455666655322 34579999999999999999876    78999999999999987652         3788999999


Q ss_pred             CCCCCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         195 RWGHAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       195 ~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ...+..+++||+|+++..+++      ++.++.+.|+|||.+++.....
T Consensus        90 ~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~  138 (240)
T TIGR02072        90 EKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGP  138 (240)
T ss_pred             hhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence            877655678999999887754      6789999999999999987543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK04266 fibrillarin; Provisional

Probab=99.38  E-value=4.8e-12  Score=116.31  Aligned_cols=109  Identities=20%  Similarity=0.221  Sum_probs=84.5

Q ss_pred             HHHHHHHHHH---HhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEE
Q psy7830         118 PSYIARCLEQ---LVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFI  190 (364)
Q Consensus       118 P~~~a~~l~~---L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~  190 (364)
                      +.+.+.++..   +.  +++|.+|||+|||+|.++..+++.    +|+++|+++.|++.+.+++..       ..|+.++
T Consensus        55 ~~~~~~ll~~~~~l~--i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-------~~nv~~i  125 (226)
T PRK04266         55 SKLAAAILKGLKNFP--IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-------RKNIIPI  125 (226)
T ss_pred             cchHHHHHhhHhhCC--CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-------cCCcEEE
Confidence            3355555553   33  679999999999999999999886    799999999999988877654       2489999


Q ss_pred             EcCCCCCC---CCCCCeeEEEEccChHH----HHHHHHhccCCCcEEEEEEc
Q psy7830         191 LKDARWGH---AEGGPYDVIFFGAGTTE----VSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       191 ~~D~~~~~---~~~~~fD~Ii~~~~~~~----l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      .+|+....   .-.++||+|+++....+    ++.++.+.|||||++++.+.
T Consensus       126 ~~D~~~~~~~~~l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~  177 (226)
T PRK04266        126 LADARKPERYAHVVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAIK  177 (226)
T ss_pred             ECCCCCcchhhhccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            99986421   11246999998765432    46899999999999999754

>TIGR00740 methyltransferase, putative

Probab=99.38  E-value=6.4e-12  Score=116.38  Aligned_cols=98  Identities=15%  Similarity=0.160  Sum_probs=80.4

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCee
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYD  205 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD  205 (364)
                      +.++.+|||+|||+|..+..+++.      +|+|+|+++.|++.|++++....   . ..+++++.+|+.....  ..+|
T Consensus        51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~---~-~~~v~~~~~d~~~~~~--~~~d  124 (239)
T TIGR00740        51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH---S-EIPVEILCNDIRHVEI--KNAS  124 (239)
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC---C-CCCeEEEECChhhCCC--CCCC
Confidence            467889999999999999888763      79999999999999999987621   1 2479999999987654  3589


Q ss_pred             EEEEccChHH--------HHHHHHhccCCCcEEEEEEc
Q psy7830         206 VIFFGAGTTE--------VSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       206 ~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      +|+++..+++        +++++.+.|||||.++++..
T Consensus       125 ~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~  162 (239)
T TIGR00740       125 MVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK  162 (239)
T ss_pred             EEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence            9988877654        56899999999999998753

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.38  E-value=7.6e-12  Score=116.13  Aligned_cols=99  Identities=25%  Similarity=0.292  Sum_probs=80.8

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      ..+.+|||+|||+|.++..++..    +++++|+++.+++.+++++..+     +.++++++.+|+.... ..++||+|+
T Consensus        86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-----~~~~~~~~~~d~~~~~-~~~~fD~Vi  159 (251)
T TIGR03534        86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL-----GLDNVTFLQSDWFEPL-PGGKFDLIV  159 (251)
T ss_pred             cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCeEEEEECchhccC-cCCceeEEE
Confidence            34569999999999999999875    8999999999999999999872     3457999999987643 346899999


Q ss_pred             EccChH--------------------------------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         209 FGAGTT--------------------------------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       209 ~~~~~~--------------------------------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +|.++.                                .+++.+.+.|+|||.+++..+..
T Consensus       160 ~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~  220 (251)
T TIGR03534       160 SNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYD  220 (251)
T ss_pred             ECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECcc
Confidence            976532                                24567888999999999987543

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>KOG1270|consensus

Probab=99.38  E-value=1.2e-12  Score=119.74  Aligned_cols=98  Identities=21%  Similarity=0.286  Sum_probs=79.2

Q ss_pred             CCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCC----CEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         135 GSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSK----TLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       135 g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~----~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      |++|||+|||.|.++..|++.  .|+|+|++++|++.|++......   .-..    ++++...|++..   .+.||.|+
T Consensus        90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP---~~~~~~~y~l~~~~~~~E~~---~~~fDaVv  163 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDP---VLEGAIAYRLEYEDTDVEGL---TGKFDAVV  163 (282)
T ss_pred             CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCc---hhccccceeeehhhcchhhc---ccccceee
Confidence            689999999999999999999  99999999999999999843321   1112    356666666544   34699999


Q ss_pred             EccChHHH------HHHHHhccCCCcEEEEEEcCCC
Q psy7830         209 FGAGTTEV------SKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       209 ~~~~~~~l------~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      |..+++|+      +..+.+.|||||+|+++..+..
T Consensus       164 csevleHV~dp~~~l~~l~~~lkP~G~lfittinrt  199 (282)
T KOG1270|consen  164 CSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRT  199 (282)
T ss_pred             eHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence            99998875      5788899999999999997764

>PRK14967 putative methyltransferase; Provisional

Probab=99.37  E-value=1.1e-11  Score=113.66  Aligned_cols=98  Identities=20%  Similarity=0.241  Sum_probs=80.0

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      +.++.+|||+|||+|.++..+++.   +|+++|+++.+++.+++|+..+.      .++.++.+|+.... ..++||+|+
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~------~~~~~~~~d~~~~~-~~~~fD~Vi  106 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAG------VDVDVRRGDWARAV-EFRPFDVVV  106 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhC------CeeEEEECchhhhc-cCCCeeEEE
Confidence            567899999999999999998876   89999999999999999987732      26888899986643 346899999


Q ss_pred             EccCh---------------------------HHHHHHHHhccCCCcEEEEEEcC
Q psy7830         209 FGAGT---------------------------TEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       209 ~~~~~---------------------------~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +|.++                           +.+++.+.++||+||++++....
T Consensus       107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~  161 (223)
T PRK14967        107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE  161 (223)
T ss_pred             ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            98542                           23567788999999999986544

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.37  E-value=4.8e-12  Score=119.60  Aligned_cols=94  Identities=16%  Similarity=0.197  Sum_probs=78.3

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc-------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCee
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL-------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYD  205 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~-------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD  205 (364)
                      ..+.+|||+|||+|+++..+++.       .++|+|+|+.+++.|+++.          +++.+..+|+...+..+++||
T Consensus        84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----------~~~~~~~~d~~~lp~~~~sfD  153 (272)
T PRK11088         84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----------PQVTFCVASSHRLPFADQSLD  153 (272)
T ss_pred             CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----------CCCeEEEeecccCCCcCCcee
Confidence            35578999999999999888754       4899999999999998753          468899999988777678999


Q ss_pred             EEEEccChHHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         206 VIFFGAGTTEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       206 ~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +|++... ....+++.+.|||||++++.....
T Consensus       154 ~I~~~~~-~~~~~e~~rvLkpgG~li~~~p~~  184 (272)
T PRK11088        154 AIIRIYA-PCKAEELARVVKPGGIVITVTPGP  184 (272)
T ss_pred             EEEEecC-CCCHHHHHhhccCCCEEEEEeCCC
Confidence            9998654 445688999999999999877654

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.36  E-value=1.1e-12  Score=132.13  Aligned_cols=178  Identities=17%  Similarity=0.097  Sum_probs=126.7

Q ss_pred             eeeccCCCccchhhhcccHHHHHHHHHHHHHcCCCCCH-HHHHHHHhCCCCCccCC--------CccccccCCCceecCC
Q psy7830          42 LRSEMYDEDNENEENFFYTRSYADFLEGLKERKLLNHP-RVEEAFYAVRRADFINV--------KPKFGFCDIPYAFANQ  112 (364)
Q Consensus        42 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~a~~~v~R~~~~p~--------~~~~~y~d~~l~ig~g  112 (364)
                      .+.++...+....|+|+++.+.+++.+.+.+.|....+ .|      .+...++..        .....|..+.+.+++-
T Consensus        25 ~l~a~~~~~~~~lRvN~lK~~~~~~~~~L~~~g~~~~~~p~------~~~g~~~~~~~~~~~~~~~~~~~~~G~~yvQd~   98 (470)
T PRK11933         25 FIAACQRPLRRSIRVNTLKISVADFLQLMAPYGWTLTPIPW------CEEGFWIERDDEDALPLGNTAEHLSGLFYIQEA   98 (470)
T ss_pred             HHHHcCCCCCeEEEEcCCcCCHHHHHHHHHhCCCceeECCC------CCceEEEecCccccCCcccChHHHCCcEEEECH
Confidence            44555555566679999998888888888776632111 11      111111110        0013566677777766


Q ss_pred             CccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE
Q psy7830         113 VVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL  187 (364)
Q Consensus       113 ~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v  187 (364)
                      +++    +++.++.. .  +++|++|||+|||+|..|.+++..     .|+++|+++..++..++|+++     ++..|+
T Consensus        99 sS~----l~~~~L~~-~--~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r-----~G~~nv  166 (470)
T PRK11933         99 SSM----LPVAALFA-D--DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISR-----CGVSNV  166 (470)
T ss_pred             HHH----HHHHHhcc-C--CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH-----cCCCeE
Confidence            554    43433311 2  689999999999999999999876     899999999999999999999     556789


Q ss_pred             EEEEcCCCCCCC-CCCCeeEEEEccChHH----------------------------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         188 EFILKDARWGHA-EGGPYDVIFFGAGTTE----------------------------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       188 ~~~~~D~~~~~~-~~~~fD~Ii~~~~~~~----------------------------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      .+...|...... ..+.||.|+++.+|..                            ++....++|||||+||.++-+-
T Consensus       167 ~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~  245 (470)
T PRK11933        167 ALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL  245 (470)
T ss_pred             EEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence            999999875421 1357999999988852                            5678889999999999998763

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.36  E-value=1e-11  Score=116.10  Aligned_cols=129  Identities=15%  Similarity=0.123  Sum_probs=91.8

Q ss_pred             cccCCCceecCCCccChHHHHHHHHHHHhccC---CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHH
Q psy7830         101 GFCDIPYAFANQVVMEPPSYIARCLEQLVDHL---QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKN  173 (364)
Q Consensus       101 ~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l---~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~  173 (364)
                      .|.+..+.++.+..+.++.+ ..+++.+...+   ..+.+|||+|||+|.++..+++.    +|+++|+|+.+++.|++|
T Consensus        51 ~f~g~~~~v~~~vf~pr~~T-e~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N  129 (251)
T TIGR03704        51 EFCGLRIAVDPGVFVPRRRT-EFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRN  129 (251)
T ss_pred             eEcCeEEEECCCCcCCCccH-HHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence            44455566666666544443 33343332222   23458999999999999998864    899999999999999999


Q ss_pred             HHhcCCCCCCCCCEEEEEcCCCCCCCC--CCCeeEEEEccChH--------------------------------HHHHH
Q psy7830         174 IKISRPDLLQSKTLEFILKDARWGHAE--GGPYDVIFFGAGTT--------------------------------EVSKT  219 (364)
Q Consensus       174 ~~~~~~~~l~~~~v~~~~~D~~~~~~~--~~~fD~Ii~~~~~~--------------------------------~l~~~  219 (364)
                      +..+        +++++.+|+.+....  .++||+|++|.++.                                .++..
T Consensus       130 ~~~~--------~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~  201 (251)
T TIGR03704       130 LADA--------GGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAG  201 (251)
T ss_pred             HHHc--------CCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHH
Confidence            8762        247888998654321  25799999997652                                24456


Q ss_pred             HHhccCCCcEEEEEEcCCC
Q psy7830         220 ILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       220 l~~~LkpGG~Lvi~~~~~~  238 (364)
                      +.+.|||||++++..+...
T Consensus       202 a~~~L~~gG~l~l~~~~~~  220 (251)
T TIGR03704       202 APDWLAPGGHLLVETSERQ  220 (251)
T ss_pred             HHHhcCCCCEEEEEECcch
Confidence            6789999999999887643

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.36  E-value=4.2e-12  Score=114.11  Aligned_cols=101  Identities=17%  Similarity=0.102  Sum_probs=83.4

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC---CCCCCee
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH---AEGGPYD  205 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~---~~~~~fD  205 (364)
                      ....+|||||||+|.++..++..    .|+|+|+++.+++.|++++...     +..|++++.+|+....   ..++.+|
T Consensus        15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~-----~l~ni~~i~~d~~~~~~~~~~~~~~d   89 (194)
T TIGR00091        15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL-----GLKNLHVLCGDANELLDKFFPDGSLS   89 (194)
T ss_pred             CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh-----CCCCEEEEccCHHHHHHhhCCCCcee
Confidence            35569999999999999999876    8999999999999999998772     3469999999987542   2345899


Q ss_pred             EEEEccChH--------------HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         206 VIFFGAGTT--------------EVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       206 ~Ii~~~~~~--------------~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      .|+++.+.+              .++..+.+.|||||.|++......
T Consensus        90 ~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~  136 (194)
T TIGR00091        90 KVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP  136 (194)
T ss_pred             EEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence            999986542              478899999999999999886653

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR00452 methyltransferase, putative

Probab=99.35  E-value=7.8e-12  Score=120.10  Aligned_cols=98  Identities=20%  Similarity=0.057  Sum_probs=77.3

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      ..+|++|||+|||+|+++..++..   .|+|+|+|+.|+..++......    ....++.+...++.+.+. ...||+|+
T Consensus       119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~----~~~~~v~~~~~~ie~lp~-~~~FD~V~  193 (314)
T TIGR00452       119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLL----DNDKRAILEPLGIEQLHE-LYAFDTVF  193 (314)
T ss_pred             CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHh----ccCCCeEEEECCHHHCCC-CCCcCEEE
Confidence            357899999999999999888776   7999999999988754322210    012478888888877654 35899999


Q ss_pred             EccChHH------HHHHHHhccCCCcEEEEEE
Q psy7830         209 FGAGTTE------VSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       209 ~~~~~~~------l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ++.++.|      .+.++++.|||||.|++..
T Consensus       194 s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet  225 (314)
T TIGR00452       194 SMGVLYHRKSPLEHLKQLKHQLVIKGELVLET  225 (314)
T ss_pred             EcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence            9988765      5789999999999999875

Known examples to date are restricted to the proteobacteria.

>PRK08317 hypothetical protein; Provisional

Probab=99.35  E-value=1.4e-11  Score=112.89  Aligned_cols=107  Identities=26%  Similarity=0.262  Sum_probs=86.8

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      ..+++.+.  +.++.+|||+|||+|.++..++..     +++++|+++.+++.++++....      ..++.+..+|+..
T Consensus         9 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~------~~~~~~~~~d~~~   80 (241)
T PRK08317          9 ARTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL------GPNVEFVRGDADG   80 (241)
T ss_pred             HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC------CCceEEEeccccc
Confidence            44555554  678899999999999999888764     8999999999999999884331      2579999999877


Q ss_pred             CCCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830         197 GHAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       197 ~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      .....++||+|+++..+++      +++++.+.|||||.+++....
T Consensus        81 ~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  126 (241)
T PRK08317         81 LPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTD  126 (241)
T ss_pred             CCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence            6555678999999877654      678999999999999987644

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.35  E-value=1e-11  Score=120.92  Aligned_cols=106  Identities=16%  Similarity=0.203  Sum_probs=84.4

Q ss_pred             HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      +..+++.+..  ....+|||+|||+|.++..+++.    +|+++|+++.+++.++++++.+.   +   ..+++..|+..
T Consensus       185 t~lLl~~l~~--~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~---l---~~~~~~~D~~~  256 (342)
T PRK09489        185 SQLLLSTLTP--HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG---L---EGEVFASNVFS  256 (342)
T ss_pred             HHHHHHhccc--cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---C---CCEEEEccccc
Confidence            4566776652  34558999999999999999876    89999999999999999998843   2   35677788765


Q ss_pred             CCCCCCCeeEEEEccChH-----------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         197 GHAEGGPYDVIFFGAGTT-----------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       197 ~~~~~~~fD~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ..  .++||+|++|.+++           .++..+.+.|||||.|++....
T Consensus       257 ~~--~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~  305 (342)
T PRK09489        257 DI--KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (342)
T ss_pred             cc--CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence            32  46899999998875           3567889999999999987644

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=2.7e-12  Score=125.56  Aligned_cols=188  Identities=22%  Similarity=0.214  Sum_probs=134.5

Q ss_pred             CCCCCCcceeeccCCCc-------------cchhhhcccHHHHHHHHHHHHHcCCCCCHH-HHHHHHhCCCCCccCCCcc
Q psy7830          34 MPIEPPPDLRSEMYDED-------------NENEENFFYTRSYADFLEGLKERKLLNHPR-VEEAFYAVRRADFINVKPK   99 (364)
Q Consensus        34 ~~~~w~~~~~~~l~~~~-------------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~a~~~v~R~~~~p~~~~   99 (364)
                      ..|.|-...+...|+..             ....|+|+++.+.+.+.+.|...+....+. +......+.+..-+...  
T Consensus        53 ~~p~w~~~~~~~~~~~~~~~~~~~a~~~~~~~~~Rvn~lk~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~--  130 (355)
T COG0144          53 SHPEWLVEKLPDALGEDEAEAIAAALLRPPPRSLRVNTLKADVEELLEALEEAGVLDEKPWVLDEVLRIEASGPIGRL--  130 (355)
T ss_pred             cCcHHHHHHHHHHcChHHHHHHHHHcCCCCCeeEEEcCccCCHHHHHHHHhhcccccccCCccccEEEecCCCCcccC--
Confidence            44556666666555554             334488888888999888887766433332 11111111111111111  


Q ss_pred             ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHH
Q psy7830         100 FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKN  173 (364)
Q Consensus       100 ~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~  173 (364)
                      ..|.++.+.+|+-+++    +.+.+++     .++|.+|||+++++|..|.+++.+      .|+++|+++..++..++|
T Consensus       131 ~~~~~G~~~vQd~sS~----l~a~~L~-----p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~n  201 (355)
T COG0144         131 PEFAEGLIYVQDEASQ----LPALVLD-----PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLREN  201 (355)
T ss_pred             hhhhceEEEEcCHHHH----HHHHHcC-----CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHH
Confidence            3688888888887666    5554443     789999999999999999999988      379999999999999999


Q ss_pred             HHhcCCCCCCCCCEEEEEcCCCCCC---CCCCCeeEEEEccChHH----------------------------HHHHHHh
Q psy7830         174 IKISRPDLLQSKTLEFILKDARWGH---AEGGPYDVIFFGAGTTE----------------------------VSKTILS  222 (364)
Q Consensus       174 ~~~~~~~~l~~~~v~~~~~D~~~~~---~~~~~fD~Ii~~~~~~~----------------------------l~~~l~~  222 (364)
                      +++     +|..|+.+...|.....   ...++||.|+++.+|..                            ++....+
T Consensus       202 l~R-----lG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~  276 (355)
T COG0144         202 LKR-----LGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALK  276 (355)
T ss_pred             HHH-----cCCCceEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            999     66788888888876443   22235999999998842                            5678889


Q ss_pred             ccCCCcEEEEEEcCC
Q psy7830         223 QLKPNGRIVAPVGNV  237 (364)
Q Consensus       223 ~LkpGG~Lvi~~~~~  237 (364)
                      .|||||+||.++-+-
T Consensus       277 ~lk~GG~LVYSTCS~  291 (355)
T COG0144         277 LLKPGGVLVYSTCSL  291 (355)
T ss_pred             hcCCCCEEEEEccCC
Confidence            999999999998663

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.35  E-value=9.3e-12  Score=123.07  Aligned_cols=103  Identities=25%  Similarity=0.212  Sum_probs=83.7

Q ss_pred             HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830         121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG  197 (364)
Q Consensus       121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~  197 (364)
                      ...+++.+.  ++++++|||||||+|.++..+++.   +|+|+|+|+.+++.|++++..        .++++...|....
T Consensus       156 ~~~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~--------l~v~~~~~D~~~l  225 (383)
T PRK11705        156 LDLICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG--------LPVEIRLQDYRDL  225 (383)
T ss_pred             HHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc--------CeEEEEECchhhc
Confidence            344555554  678999999999999999998875   899999999999999998743        2588888887654


Q ss_pred             CCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEcC
Q psy7830         198 HAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       198 ~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                         .++||.|++...+++        +++.+.++|||||++++....
T Consensus       226 ---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~  269 (383)
T PRK11705        226 ---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIG  269 (383)
T ss_pred             ---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence               368999998876654        568899999999999997644

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.34  E-value=1.4e-11  Score=117.12  Aligned_cols=133  Identities=23%  Similarity=0.314  Sum_probs=95.3

Q ss_pred             cccCCCceecCCCccChHHHHHHHHHHHhcc--CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHH
Q psy7830         101 GFCDIPYAFANQVVMEPPSYIARCLEQLVDH--LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNI  174 (364)
Q Consensus       101 ~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~--l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~  174 (364)
                      .|.+..+.+..+..+.+|.+-..+-..+...  ..++.+|||+|||+|.++..++..    +|+++|+|+.+++.|++|+
T Consensus        79 ~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~  158 (284)
T TIGR00536        79 EFYGLEFFVNEHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENA  158 (284)
T ss_pred             eEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence            3445556666677676665433322222211  122369999999999999999875    8999999999999999999


Q ss_pred             HhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccCh-------------------------------HHHHHHHHhc
Q psy7830         175 KISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGT-------------------------------TEVSKTILSQ  223 (364)
Q Consensus       175 ~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~-------------------------------~~l~~~l~~~  223 (364)
                      ..+.   + ..+++++.+|..+... ..+||+|++|.+.                               ..++..+.+.
T Consensus       159 ~~~~---~-~~~v~~~~~d~~~~~~-~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~  233 (284)
T TIGR00536       159 EKNQ---L-EHRVEFIQSNLFEPLA-GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDY  233 (284)
T ss_pred             HHcC---C-CCcEEEEECchhccCc-CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHh
Confidence            8732   1 1359999999876432 2479999998433                               1245677889


Q ss_pred             cCCCcEEEEEEcCCC
Q psy7830         224 LKPNGRIVAPVGNVW  238 (364)
Q Consensus       224 LkpGG~Lvi~~~~~~  238 (364)
                      |+|||.+++.++...
T Consensus       234 L~~gG~l~~e~g~~q  248 (284)
T TIGR00536       234 LKPNGFLVCEIGNWQ  248 (284)
T ss_pred             ccCCCEEEEEECccH
Confidence            999999999998753

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.33  E-value=2.3e-12  Score=103.23  Aligned_cols=85  Identities=24%  Similarity=0.348  Sum_probs=68.2

Q ss_pred             EEEECCCccHHHHHHHcc-------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEc
Q psy7830         138 VLDIGSGQGYMATAKEWL-------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFG  210 (364)
Q Consensus       138 VLDiGcGsG~~a~~la~~-------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~  210 (364)
                      |||+|||+|..+..+.+.       +++++|+|+.|++.++++....     + .+++++++|+.++....++||+|++.
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~-----~-~~~~~~~~D~~~l~~~~~~~D~v~~~   74 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED-----G-PKVRFVQADARDLPFSDGKFDLVVCS   74 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT-----T-TTSEEEESCTTCHHHHSSSEEEEEE-
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc-----C-CceEEEECCHhHCcccCCCeeEEEEc
Confidence            799999999999888743       8999999999999999998762     1 28999999998876656799999994


Q ss_pred             cC-hH--------HHHHHHHhccCCCc
Q psy7830         211 AG-TT--------EVSKTILSQLKPNG  228 (364)
Q Consensus       211 ~~-~~--------~l~~~l~~~LkpGG  228 (364)
                      .. ++        .+++++.++|||||
T Consensus        75 ~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   75 GLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             CCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            43 43        36789999999998

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=1e-11  Score=116.69  Aligned_cols=105  Identities=20%  Similarity=0.227  Sum_probs=86.7

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG  197 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~  197 (364)
                      ..+++.|.  ...+.+|||+|||.|.+++.+++.    +++.+|+|..+++.+++|+..|.     ..+..+...|..+.
T Consensus       148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~-----~~~~~v~~s~~~~~  220 (300)
T COG2813         148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG-----VENTEVWASNLYEP  220 (300)
T ss_pred             HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC-----CCccEEEEeccccc
Confidence            56667666  344559999999999999999988    99999999999999999999854     24546777777655


Q ss_pred             CCCCCCeeEEEEccChH-----------HHHHHHHhccCCCcEEEEEEc
Q psy7830         198 HAEGGPYDVIFFGAGTT-----------EVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       198 ~~~~~~fD~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      ..  ++||.|++|.+++           .++....+.|++||.|.+...
T Consensus       221 v~--~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         221 VE--GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             cc--ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence            43  3899999999985           367888999999999998776

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.33  E-value=1.6e-11  Score=109.59  Aligned_cols=104  Identities=17%  Similarity=0.147  Sum_probs=79.9

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA  199 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~  199 (364)
                      ..+++.+.  ..++.++||+|||.|..+..||+.  .|+++|+|+..++.+++.++...     . +|++.+.|+.....
T Consensus        20 s~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~-----l-~i~~~~~Dl~~~~~   91 (192)
T PF03848_consen   20 SEVLEAVP--LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEG-----L-DIRTRVADLNDFDF   91 (192)
T ss_dssp             HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-------TEEEEE-BGCCBS-
T ss_pred             HHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcC-----c-eeEEEEecchhccc
Confidence            44555544  335679999999999999999999  99999999999999988776622     2 59999999877655


Q ss_pred             CCCCeeEEEEccChH--------HHHHHHHhccCCCcEEEEEE
Q psy7830         200 EGGPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       200 ~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      + +.||+|++..++.        .+.+.+.+.++|||++++..
T Consensus        92 ~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~  133 (192)
T PF03848_consen   92 P-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT  133 (192)
T ss_dssp             T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             c-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence            3 6899999865553        36788899999999988744

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK14968 putative methyltransferase; Provisional

Probab=99.33  E-value=3e-11  Score=107.00  Aligned_cols=109  Identities=26%  Similarity=0.333  Sum_probs=85.0

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA  199 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~  199 (364)
                      ..+++.+.  ..++.+|||+|||+|+++..++..  +|+++|+++.+++.+++++..+.   +...++.++.+|..+...
T Consensus        13 ~~l~~~~~--~~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~---~~~~~~~~~~~d~~~~~~   87 (188)
T PRK14968         13 FLLAENAV--DKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNN---IRNNGVEVIRSDLFEPFR   87 (188)
T ss_pred             HHHHHhhh--ccCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcC---CCCcceEEEecccccccc
Confidence            44555555  467889999999999999999888  99999999999999999987632   211128899999876443


Q ss_pred             CCCCeeEEEEccCh---------------------------HHHHHHHHhccCCCcEEEEEEcC
Q psy7830         200 EGGPYDVIFFGAGT---------------------------TEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       200 ~~~~fD~Ii~~~~~---------------------------~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                       ...||+|++|.++                           ..+++.+.+.|||||.+++....
T Consensus        88 -~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~  150 (188)
T PRK14968         88 -GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS  150 (188)
T ss_pred             -ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence             3479999987653                           22568888999999999887654

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=1.9e-11  Score=115.83  Aligned_cols=130  Identities=19%  Similarity=0.235  Sum_probs=96.4

Q ss_pred             cccCCCceecCCCccChHHHHHHHHHHHhccCCCCC-EEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHH
Q psy7830         101 GFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGS-RVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIK  175 (364)
Q Consensus       101 ~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~-~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~  175 (364)
                      .|..-.+.+..+..+++|.+...+-..+. ...... +|||+|||||.+++.+++.    +|+|+|+|+.+++.|++|+.
T Consensus        77 ~f~gl~~~v~~~vliPr~dTe~Lve~~l~-~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~  155 (280)
T COG2890          77 EFGGLRFKVDEGVLIPRPDTELLVEAALA-LLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAE  155 (280)
T ss_pred             eecceeeeeCCCceecCCchHHHHHHHHH-hhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHH
Confidence            34445556667778888877443333221 122233 7999999999999999987    89999999999999999999


Q ss_pred             hcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccCh---H----------------------------HHHHHHHhcc
Q psy7830         176 ISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGT---T----------------------------EVSKTILSQL  224 (364)
Q Consensus       176 ~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~---~----------------------------~l~~~l~~~L  224 (364)
                      .+.     ..++.++.+|......  ++||+|++|.++   .                            .++..+.+.|
T Consensus       156 ~~~-----l~~~~~~~~dlf~~~~--~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l  228 (280)
T COG2890         156 RNG-----LVRVLVVQSDLFEPLR--GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDIL  228 (280)
T ss_pred             HcC-----CccEEEEeeecccccC--CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHc
Confidence            843     3567777777655433  489999999775   1                            1456788899


Q ss_pred             CCCcEEEEEEcCCC
Q psy7830         225 KPNGRIVAPVGNVW  238 (364)
Q Consensus       225 kpGG~Lvi~~~~~~  238 (364)
                      +|||.+++..+...
T Consensus       229 ~~~g~l~le~g~~q  242 (280)
T COG2890         229 KPGGVLILEIGLTQ  242 (280)
T ss_pred             CCCcEEEEEECCCc
Confidence            99999999998654

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.32  E-value=1.3e-11  Score=119.53  Aligned_cols=94  Identities=17%  Similarity=0.082  Sum_probs=79.7

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      .++.+|||+|||+|.++..+++.    +|+++|+++.|++.++++...        .+++++.+|+.+....+++||+|+
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~--------~~i~~i~gD~e~lp~~~~sFDvVI  183 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------KECKIIEGDAEDLPFPTDYADRYV  183 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc--------cCCeEEeccHHhCCCCCCceeEEE
Confidence            46889999999999999888764    899999999999999987542        478899999987766567899999


Q ss_pred             EccChHH------HHHHHHhccCCCcEEEEEE
Q psy7830         209 FGAGTTE------VSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       209 ~~~~~~~------l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ++..+++      +++++.+.|||||++++..
T Consensus       184 s~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~  215 (340)
T PLN02490        184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACLIG  215 (340)
T ss_pred             EcChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            9877653      6789999999999998754

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.32  E-value=8.3e-12  Score=107.39  Aligned_cols=101  Identities=29%  Similarity=0.336  Sum_probs=76.7

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA  199 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~  199 (364)
                      ...+..+.+...++.+|||+|||+|.++..+++.  +|+++|+++.+++.      .         ++.....+......
T Consensus        10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~---------~~~~~~~~~~~~~~   74 (161)
T PF13489_consen   10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------R---------NVVFDNFDAQDPPF   74 (161)
T ss_dssp             HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------T---------TSEEEEEECHTHHC
T ss_pred             HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------h---------hhhhhhhhhhhhhc
Confidence            3344444433578899999999999999999877  99999999999988      2         12222222222233


Q ss_pred             CCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         200 EGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       200 ~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ..++||+|+++..+++      +++.+.++|||||++++.+...
T Consensus        75 ~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~  118 (161)
T PF13489_consen   75 PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR  118 (161)
T ss_dssp             HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred             cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            4578999999999876      5789999999999999998764

...

>KOG1540|consensus

Probab=99.32  E-value=1.7e-11  Score=111.64  Aligned_cols=108  Identities=21%  Similarity=0.215  Sum_probs=86.7

Q ss_pred             HHHHhccCCCCCEEEEECCCccHHHHHHHcc----------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC
Q psy7830         125 LEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA  194 (364)
Q Consensus       125 l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~  194 (364)
                      ..+|.  ..+++++||++||||-++..+.+.          +|+.+|++|+|+..++++..+..  ......+.++++|+
T Consensus        93 v~~L~--p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~--l~~~~~~~w~~~dA  168 (296)
T KOG1540|consen   93 VSKLG--PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRP--LKASSRVEWVEGDA  168 (296)
T ss_pred             hhccC--CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcC--CCcCCceEEEeCCc
Confidence            44444  567899999999999999888765          79999999999999999987622  01223599999999


Q ss_pred             CCCCCCCCCeeEEEEccCh------HHHHHHHHhccCCCcEEEEEEcC
Q psy7830         195 RWGHAEGGPYDVIFFGAGT------TEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       195 ~~~~~~~~~fD~Ii~~~~~------~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +++++++.+||...+...+      +..+++++++|||||++.+-..+
T Consensus       169 E~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFs  216 (296)
T KOG1540|consen  169 EDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFS  216 (296)
T ss_pred             ccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEcc
Confidence            9999988999998765544      34678999999999998864433

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.32  E-value=1e-11  Score=114.85  Aligned_cols=107  Identities=22%  Similarity=0.248  Sum_probs=85.1

Q ss_pred             HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC
Q psy7830         121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR  195 (364)
Q Consensus       121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~  195 (364)
                      ...++..+.. ..++.+|||+|||+|+.++.++..     +|+++|+++++++.|++|++.+.   +. ++++++.+|+.
T Consensus        56 ~g~~L~~l~~-~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g---l~-~~i~~~~gda~  130 (234)
T PLN02781         56 EGLFLSMLVK-IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG---VD-HKINFIQSDAL  130 (234)
T ss_pred             HHHHHHHHHH-HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CC-CcEEEEEccHH
Confidence            3555555553 556889999999999998887764     99999999999999999998833   32 57999999987


Q ss_pred             CCCC------CCCCeeEEEEccC---hHHHHHHHHhccCCCcEEEE
Q psy7830         196 WGHA------EGGPYDVIFFGAG---TTEVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       196 ~~~~------~~~~fD~Ii~~~~---~~~l~~~l~~~LkpGG~Lvi  232 (364)
                      +...      ..++||+|+++..   +..+.+.+.+.|+|||++++
T Consensus       131 ~~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~  176 (234)
T PLN02781        131 SALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAF  176 (234)
T ss_pred             HHHHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence            6422      1358999999964   34577889999999999886

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=1.6e-11  Score=112.43  Aligned_cols=119  Identities=21%  Similarity=0.250  Sum_probs=100.3

Q ss_pred             CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCC-
Q psy7830         112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSK-  185 (364)
Q Consensus       112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~-  185 (364)
                      +..+-.|.-.+.++..+.  +.+|++|||.|.|||.++..++..     +|+++|+.++.++.|++|++.     .+.. 
T Consensus        74 ~tQiIyPKD~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~-----~~l~d  146 (256)
T COG2519          74 RTQIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSE-----FGLGD  146 (256)
T ss_pred             CCceecCCCHHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHH-----hcccc
Confidence            334444555677888887  899999999999999999999964     999999999999999999998     2223 


Q ss_pred             CEEEEEcCCCCCCCCCCCeeEEEEccChHH-HHHHHHhccCCCcEEEEEEcCCC
Q psy7830         186 TLEFILKDARWGHAEGGPYDVIFFGAGTTE-VSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       186 ~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~-l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      ++.+..+|+.+...++ .||.|+.+.+-+| .++.+.+.|||||.+++-+++-.
T Consensus       147 ~v~~~~~Dv~~~~~~~-~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~ve  199 (256)
T COG2519         147 RVTLKLGDVREGIDEE-DVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTVE  199 (256)
T ss_pred             ceEEEecccccccccc-ccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence            4999999998876644 8999999998876 78999999999999998877653

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.31  E-value=1.4e-11  Score=109.14  Aligned_cols=94  Identities=17%  Similarity=0.220  Sum_probs=73.1

Q ss_pred             CCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEcc
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGA  211 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~  211 (364)
                      .-.++||+|||.|.++..|+.+  +++++|+++.+++.|++++..       .++|++.+.|+...++ .++||+|++..
T Consensus        43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~-------~~~V~~~~~dvp~~~P-~~~FDLIV~SE  114 (201)
T PF05401_consen   43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG-------LPHVEWIQADVPEFWP-EGRFDLIVLSE  114 (201)
T ss_dssp             SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TTT----SS-EEEEEEES
T ss_pred             ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC-------CCCeEEEECcCCCCCC-CCCeeEEEEeh
Confidence            3468999999999999999999  999999999999999999865       4699999999987765 47999999876


Q ss_pred             ChH---------HHHHHHHhccCCCcEEEEEEc
Q psy7830         212 GTT---------EVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       212 ~~~---------~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      .+.         .+...+.+.|+|||.||+-..
T Consensus       115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen  115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            653         256788899999999998653

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.31  E-value=1.4e-11  Score=125.98  Aligned_cols=133  Identities=14%  Similarity=0.177  Sum_probs=99.7

Q ss_pred             ccccCCCceecCCCccChHHHHHHHHHHHhccC--------------------------CCCCEEEEECCCccHHHHHHH
Q psy7830         100 FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHL--------------------------QNGSRVLDIGSGQGYMATAKE  153 (364)
Q Consensus       100 ~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l--------------------------~~g~~VLDiGcGsG~~a~~la  153 (364)
                      ..|....+.++.+..+++|.+- .+++++...+                          .++.+|||+|||+|.+++.++
T Consensus        79 ~~F~g~~f~V~~~VLIPRpeTE-~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la  157 (506)
T PRK01544         79 KEFYSREFIVNKHVLIPRSDTE-VLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLL  157 (506)
T ss_pred             CEEcCcEEEeCCCcccCCCcHH-HHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHH
Confidence            4677788889999999999873 3333332111                          134689999999999999887


Q ss_pred             cc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChH---------------
Q psy7830         154 WL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTT---------------  214 (364)
Q Consensus       154 ~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~---------------  214 (364)
                      ..    +|+++|+|+.+++.|++|+..+.   + .+++.++.+|+..... .++||+|++|.++-               
T Consensus       158 ~~~p~~~v~avDis~~al~~A~~N~~~~~---l-~~~v~~~~~D~~~~~~-~~~fDlIvsNPPYi~~~~~~~l~~~v~~~  232 (506)
T PRK01544        158 CELPNANVIATDISLDAIEVAKSNAIKYE---V-TDRIQIIHSNWFENIE-KQKFDFIVSNPPYISHSEKSEMAIETINY  232 (506)
T ss_pred             HHCCCCeEEEEECCHHHHHHHHHHHHHcC---C-ccceeeeecchhhhCc-CCCccEEEECCCCCCchhhhhcCchhhcc
Confidence            54    89999999999999999987732   2 1479999999765332 35799999986531               


Q ss_pred             -----------------HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         215 -----------------EVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       215 -----------------~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                                       .+++.+.+.|+|||.+++.++...
T Consensus       233 EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q  273 (506)
T PRK01544        233 EPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQ  273 (506)
T ss_pred             CcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCch
Confidence                             134567789999999999886543

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.30  E-value=4e-11  Score=113.03  Aligned_cols=129  Identities=24%  Similarity=0.322  Sum_probs=93.0

Q ss_pred             ccCCCceecCCCccChHHHHHHHHHHHhc--cCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHH
Q psy7830         102 FCDIPYAFANQVVMEPPSYIARCLEQLVD--HLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIK  175 (364)
Q Consensus       102 y~d~~l~ig~g~~~s~P~~~a~~l~~L~~--~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~  175 (364)
                      |.+..+.++.+..+++|.+ ..+++.+..  ...++.+|||+|||+|.++..++..    +|+++|+++.+++.+++|+.
T Consensus        75 f~~~~~~~~~~~lipr~~t-e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~  153 (275)
T PRK09328         75 FWGLDFKVSPGVLIPRPET-EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK  153 (275)
T ss_pred             EcCcEEEECCCceeCCCCc-HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence            4444555555655555544 333333321  1356789999999999999998876    89999999999999999987


Q ss_pred             hcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChH--------------------------------HHHHHHHhc
Q psy7830         176 ISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTT--------------------------------EVSKTILSQ  223 (364)
Q Consensus       176 ~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~--------------------------------~l~~~l~~~  223 (364)
                      .     ....++.++.+|...... .++||+|++|.++.                                .+++.+.+.
T Consensus       154 ~-----~~~~~i~~~~~d~~~~~~-~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~  227 (275)
T PRK09328        154 H-----GLGARVEFLQGDWFEPLP-GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRY  227 (275)
T ss_pred             h-----CCCCcEEEEEccccCcCC-CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHh
Confidence            3     113589999999865433 46899999986541                                134566699


Q ss_pred             cCCCcEEEEEEcCC
Q psy7830         224 LKPNGRIVAPVGNV  237 (364)
Q Consensus       224 LkpGG~Lvi~~~~~  237 (364)
                      |+|||++++..+..
T Consensus       228 Lk~gG~l~~e~g~~  241 (275)
T PRK09328        228 LKPGGWLLLEIGYD  241 (275)
T ss_pred             cccCCEEEEEECch
Confidence            99999999977653

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.29  E-value=2.4e-11  Score=111.96  Aligned_cols=111  Identities=18%  Similarity=0.236  Sum_probs=89.0

Q ss_pred             HHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC
Q psy7830         123 RCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH  198 (364)
Q Consensus       123 ~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~  198 (364)
                      .+|..... +....+|||+|||+|.+++.++.+    ++++||+++.+.+.|++|++.|.   + .++++++++|+....
T Consensus        34 iLL~~~~~-~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~---l-~~ri~v~~~Di~~~~  108 (248)
T COG4123          34 ILLAAFAP-VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP---L-EERIQVIEADIKEFL  108 (248)
T ss_pred             HHHHhhcc-cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc---c-hhceeEehhhHHHhh
Confidence            34444432 455889999999999999999988    89999999999999999998743   2 368999999998765


Q ss_pred             CC--CCCeeEEEEccChH------------------------HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         199 AE--GGPYDVIFFGAGTT------------------------EVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       199 ~~--~~~fD~Ii~~~~~~------------------------~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      ..  ..+||+|+||.++.                        .+.+...++||+||.+.+......
T Consensus       109 ~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~er  174 (248)
T COG4123         109 KALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPER  174 (248)
T ss_pred             hcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHH
Confidence            33  24699999997762                        145678899999999999887654

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.29  E-value=8.4e-13  Score=105.18  Aligned_cols=87  Identities=21%  Similarity=0.196  Sum_probs=56.3

Q ss_pred             EEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC--CCCeeEEEEccC
Q psy7830         139 LDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE--GGPYDVIFFGAG  212 (364)
Q Consensus       139 LDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~--~~~fD~Ii~~~~  212 (364)
                      ||+|||+|.++..++..    +++++|+|+.|++.+++++...     ...+......+..+....  .++||+|++..+
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~v   75 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAEL-----GNDNFERLRFDVLDLFDYDPPESFDLVVASNV   75 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHC-----T---EEEEE--SSS---CCC----SEEEEE-T
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc-----CCcceeEEEeecCChhhcccccccceehhhhh
Confidence            79999999999887765    9999999999999998888772     223444444443332211  258999999988


Q ss_pred             hHH------HHHHHHhccCCCcEE
Q psy7830         213 TTE------VSKTILSQLKPNGRI  230 (364)
Q Consensus       213 ~~~------l~~~l~~~LkpGG~L  230 (364)
                      +++      +++++.++|||||+|
T Consensus        76 l~~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   76 LHHLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             TS--S-HHHHHHHHTTT-TSS-EE
T ss_pred             HhhhhhHHHHHHHHHHHcCCCCCC
Confidence            876      467999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.28  E-value=2.5e-11  Score=111.08  Aligned_cols=95  Identities=21%  Similarity=0.199  Sum_probs=78.2

Q ss_pred             CEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEcc
Q psy7830         136 SRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGA  211 (364)
Q Consensus       136 ~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~  211 (364)
                      .+|||+|||+|..+..+++.    +|+++|+|+.+++.+++++....   + .++++++..|....+. .++||+|++..
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g---l-~~~i~~~~~d~~~~~~-~~~fD~I~~~~   75 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG---L-QGRIRIFYRDSAKDPF-PDTYDLVFGFE   75 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC---C-CcceEEEecccccCCC-CCCCCEeehHH
Confidence            37999999999999888865    89999999999999999987621   1 2478999999865543 35899999877


Q ss_pred             ChHH------HHHHHHhccCCCcEEEEEEc
Q psy7830         212 GTTE------VSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       212 ~~~~------l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      .+++      +++++.+.|||||++++...
T Consensus        76 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~  105 (224)
T smart00828       76 VIHHIKDKMDLFSNISRHLKDGGHLVLADF  105 (224)
T ss_pred             HHHhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence            6654      67899999999999998764

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.27  E-value=4.6e-11  Score=104.87  Aligned_cols=105  Identities=13%  Similarity=0.051  Sum_probs=82.3

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA  199 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~  199 (364)
                      ..+++.+.  +.++.+|||+|||+|.++..+++.  +|+++|+++.+++.+++++..       .++++++.+|+.....
T Consensus         3 ~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~-------~~~v~ii~~D~~~~~~   73 (169)
T smart00650        3 DKIVRAAN--LRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA-------ADNLTVIHGDALKFDL   73 (169)
T ss_pred             HHHHHhcC--CCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc-------CCCEEEEECchhcCCc
Confidence            45566665  577889999999999999999988  999999999999999998754       2489999999988765


Q ss_pred             CCCCeeEEEEccChHH---HHHHHHhc--cCCCcEEEEEEc
Q psy7830         200 EGGPYDVIFFGAGTTE---VSKTILSQ--LKPNGRIVAPVG  235 (364)
Q Consensus       200 ~~~~fD~Ii~~~~~~~---l~~~l~~~--LkpGG~Lvi~~~  235 (364)
                      .+..||.|++|.+++.   ++..+.+.  +.++|.+++...
T Consensus        74 ~~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e  114 (169)
T smart00650       74 PKLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKE  114 (169)
T ss_pred             cccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHH
Confidence            5556999999988763   44444432  346777776654

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.27  E-value=6.8e-11  Score=107.79  Aligned_cols=103  Identities=16%  Similarity=0.089  Sum_probs=75.8

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhc-CC------CCCCCCCEEEEEcCCCCCCCC-CC
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKIS-RP------DLLQSKTLEFILKDARWGHAE-GG  202 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~-~~------~~l~~~~v~~~~~D~~~~~~~-~~  202 (364)
                      .++.+|||+|||.|..+..+|.+  .|+|+|+|+.+++.+.+..... ..      +.....+++++++|+.+.... .+
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~  112 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG  112 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence            57789999999999999999999  9999999999999864422110 00      000124799999999876542 35


Q ss_pred             CeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEc
Q psy7830         203 PYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       203 ~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      +||.|+-...+.+        .++.+.++|||||++++...
T Consensus       113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~  153 (213)
T TIGR03840       113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL  153 (213)
T ss_pred             CcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence            7999886655433        56789999999998666543

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK06922 hypothetical protein; Provisional

Probab=99.27  E-value=4.2e-11  Score=123.27  Aligned_cols=97  Identities=23%  Similarity=0.245  Sum_probs=79.4

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--CCCCCeeE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH--AEGGPYDV  206 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~--~~~~~fD~  206 (364)
                      .++.+|||+|||+|..+..+++.    +|+|+|+|+.|++.|+++.....      .++.++++|+...+  ..+++||+
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g------~~ie~I~gDa~dLp~~fedeSFDv  490 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG------RSWNVIKGDAINLSSSFEKESVDT  490 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC------CCeEEEEcchHhCccccCCCCEEE
Confidence            46889999999999999888764    99999999999999998875521      36888999987654  34578999


Q ss_pred             EEEccChHH-------------------HHHHHHhccCCCcEEEEEEc
Q psy7830         207 IFFGAGTTE-------------------VSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       207 Ii~~~~~~~-------------------l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      |+++..+++                   +++++.+.|||||++++..+
T Consensus       491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            998865543                   45788999999999999764

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.27  E-value=9.1e-11  Score=105.76  Aligned_cols=112  Identities=15%  Similarity=0.102  Sum_probs=83.6

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHH-Hcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAK-EWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~l-a~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      +...+++++.. ..++.+|||+|||+|.+++.+ ++.  +|+++|+++.+++.+++|++.+     +..+++++.+|+..
T Consensus        40 v~e~l~~~l~~-~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~-----~~~~v~~~~~D~~~  113 (199)
T PRK10909         40 VRETLFNWLAP-VIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATL-----KAGNARVVNTNALS  113 (199)
T ss_pred             HHHHHHHHHhh-hcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHh-----CCCcEEEEEchHHH
Confidence            44445666642 346789999999999999864 444  9999999999999999999883     34589999999875


Q ss_pred             CCC-CCCCeeEEEEccChH-----HHHHHHHh--ccCCCcEEEEEEcCC
Q psy7830         197 GHA-EGGPYDVIFFGAGTT-----EVSKTILS--QLKPNGRIVAPVGNV  237 (364)
Q Consensus       197 ~~~-~~~~fD~Ii~~~~~~-----~l~~~l~~--~LkpGG~Lvi~~~~~  237 (364)
                      ... ...+||+|++|.++.     .+++.+..  .|+|+|.++++....
T Consensus       114 ~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~  162 (199)
T PRK10909        114 FLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEVE  162 (199)
T ss_pred             HHhhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence            432 234699999999952     23444443  378999999987653

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.26  E-value=7.5e-11  Score=106.87  Aligned_cols=99  Identities=12%  Similarity=0.095  Sum_probs=72.8

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG  197 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~  197 (364)
                      ..+.+.+. .+.++.+|||+|||+|..+..+++.    +++|+|+|+.+++.|+++.          +++.+..+|+.. 
T Consensus        32 ~~~~~~l~-~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~----------~~~~~~~~d~~~-   99 (204)
T TIGR03587        32 AMFARALN-RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL----------PNINIIQGSLFD-   99 (204)
T ss_pred             HHHHHHHH-hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC----------CCCcEEEeeccC-
Confidence            33333333 3567889999999999999988764    8999999999999998864          356778888877 


Q ss_pred             CCCCCCeeEEEEccChHHH--------HHHHHhccCCCcEEEEEE
Q psy7830         198 HAEGGPYDVIFFGAGTTEV--------SKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       198 ~~~~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi~~  234 (364)
                      +..+++||+|+++..++++        ++++.+.+  ++.+++..
T Consensus       100 ~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e  142 (204)
T TIGR03587       100 PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE  142 (204)
T ss_pred             CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence            4456789999999888663        24444444  44555544

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK05785 hypothetical protein; Provisional

Probab=99.26  E-value=5.5e-11  Score=109.43  Aligned_cols=92  Identities=12%  Similarity=0.099  Sum_probs=73.8

Q ss_pred             HHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC
Q psy7830         123 RCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA  199 (364)
Q Consensus       123 ~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~  199 (364)
                      .+++.+..+..++.+|||+|||+|.++..+++.   +|+|+|+|++|++.|+++.             .++++|+...+.
T Consensus        40 ~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~-------------~~~~~d~~~lp~  106 (226)
T PRK05785         40 ELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD-------------DKVVGSFEALPF  106 (226)
T ss_pred             HHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc-------------ceEEechhhCCC
Confidence            344444433346789999999999999998876   8999999999999987631             246788888877


Q ss_pred             CCCCeeEEEEccChHH------HHHHHHhccCCC
Q psy7830         200 EGGPYDVIFFGAGTTE------VSKTILSQLKPN  227 (364)
Q Consensus       200 ~~~~fD~Ii~~~~~~~------l~~~l~~~LkpG  227 (364)
                      .+++||+|+++..+++      .++++.++|||.
T Consensus       107 ~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~  140 (226)
T PRK05785        107 RDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ  140 (226)
T ss_pred             CCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence            7789999999887764      678999999994

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.25  E-value=9.2e-11  Score=107.16  Aligned_cols=106  Identities=16%  Similarity=0.128  Sum_probs=80.9

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG  197 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~  197 (364)
                      +...+++++.....++.+|||+|||+|.++..++..  +|+|+|+++.+++.|++++....   . ..++.+.++|+...
T Consensus        41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~---~-~~~i~~~~~d~~~~  116 (219)
T TIGR02021        41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRD---V-AGNVEFEVNDLLSL  116 (219)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---C-CCceEEEECChhhC
Confidence            456667776532456889999999999999999887  99999999999999999987622   1 14799999998765


Q ss_pred             CCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEE
Q psy7830         198 HAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVA  232 (364)
Q Consensus       198 ~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi  232 (364)
                      .   ++||+|++...+.+        ++.++.+.+++++.+.+
T Consensus       117 ~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~  156 (219)
T TIGR02021       117 C---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF  156 (219)
T ss_pred             C---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence            3   68999998766543        35667777776655544

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.25  E-value=6.5e-11  Score=116.05  Aligned_cols=110  Identities=20%  Similarity=0.214  Sum_probs=90.1

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG  197 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~  197 (364)
                      ..+++.+.  ...+..+||||||+|.++..+|..    .++|+|+++.+++.+.+++..     .+..|+.++.+|+...
T Consensus       112 ~~~~~~~~--~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~-----~gL~NV~~i~~DA~~l  184 (390)
T PRK14121        112 DNFLDFIS--KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIEL-----LNLKNLLIINYDARLL  184 (390)
T ss_pred             HHHHHHhc--CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH-----cCCCcEEEEECCHHHh
Confidence            34555554  345679999999999999999987    899999999999999999877     3357999999998643


Q ss_pred             --CCCCCCeeEEEEccChH------------HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         198 --HAEGGPYDVIFFGAGTT------------EVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       198 --~~~~~~fD~Ii~~~~~~------------~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                        ...++++|.|+++.+.+            .++..+.+.|+|||.+.+.+....
T Consensus       185 l~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~  239 (390)
T PRK14121        185 LELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSEL  239 (390)
T ss_pred             hhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHH
Confidence              23457899999988764            468899999999999999886654

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.25  E-value=2.6e-11  Score=107.18  Aligned_cols=96  Identities=19%  Similarity=0.267  Sum_probs=79.6

Q ss_pred             cCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--CCCCCee
Q psy7830         131 HLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH--AEGGPYD  205 (364)
Q Consensus       131 ~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~--~~~~~fD  205 (364)
                      .+++|.+|||+|||.|.+...|.+.   +.+|+|++++.+..+.++            .+.++++|+....  +++++||
T Consensus        10 ~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r------------Gv~Viq~Dld~gL~~f~d~sFD   77 (193)
T PF07021_consen   10 WIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR------------GVSVIQGDLDEGLADFPDQSFD   77 (193)
T ss_pred             HcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc------------CCCEEECCHHHhHhhCCCCCcc
Confidence            3679999999999999999998876   899999999998877653            5678999987654  4568999


Q ss_pred             EEEEccChHHHH---HHHHhccCCCcEEEEEEcCCC
Q psy7830         206 VIFFGAGTTEVS---KTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       206 ~Ii~~~~~~~l~---~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      .|+.+..++++.   .-+.++|+-|...+++.++-+
T Consensus        78 ~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFPNFg  113 (193)
T PF07021_consen   78 YVILSQTLQAVRRPDEVLEEMLRVGRRAIVSFPNFG  113 (193)
T ss_pred             EEehHhHHHhHhHHHHHHHHHHHhcCeEEEEecChH
Confidence            999999998753   346677888999999998864

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.25  E-value=1.1e-10  Score=107.10  Aligned_cols=110  Identities=23%  Similarity=0.283  Sum_probs=86.2

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA  194 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~  194 (364)
                      ....++..+.  ..++.+|||+|||+|..+..++..     +++++|+++.+++.+++++....   . ..++.+..+|+
T Consensus        39 ~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~---~-~~~~~~~~~d~  112 (239)
T PRK00216         39 WRRKTIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG---L-SGNVEFVQGDA  112 (239)
T ss_pred             HHHHHHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc---c-ccCeEEEeccc
Confidence            3345566555  457889999999999999888764     89999999999999999876521   1 24789999998


Q ss_pred             CCCCCCCCCeeEEEEccChH------HHHHHHHhccCCCcEEEEEEc
Q psy7830         195 RWGHAEGGPYDVIFFGAGTT------EVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       195 ~~~~~~~~~fD~Ii~~~~~~------~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      .......+.||+|+++..++      .++..+.+.|+|||++++...
T Consensus       113 ~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~  159 (239)
T PRK00216        113 EALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF  159 (239)
T ss_pred             ccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence            87665557899998876543      467899999999999987543

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.21  E-value=1e-10  Score=118.97  Aligned_cols=104  Identities=18%  Similarity=0.192  Sum_probs=81.8

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC--C
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW--G  197 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~--~  197 (364)
                      ..+++.+.  ..++.+|||+|||+|.++..+++.  +|+|+|+++.+++.+++....       .++++++++|+..  .
T Consensus        27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~-------~~~i~~~~~d~~~~~~   97 (475)
T PLN02336         27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGH-------YKNVKFMCADVTSPDL   97 (475)
T ss_pred             hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhcc-------CCceEEEEeccccccc
Confidence            44455554  346789999999999999999987  999999999999887653221       2589999999863  3


Q ss_pred             CCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEE
Q psy7830         198 HAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       198 ~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~  234 (364)
                      +...++||+|+++.++++        ++.++.+.|||||++++..
T Consensus        98 ~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d  142 (475)
T PLN02336         98 NISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE  142 (475)
T ss_pred             CCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            334578999999887654        5678999999999999864

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.21  E-value=1.1e-10  Score=117.81  Aligned_cols=109  Identities=20%  Similarity=0.215  Sum_probs=85.5

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC-
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH-  198 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~-  198 (364)
                      ..+++++.  +.++.+|||+|||+|.+++.+++.  +|+|+|+|+.+++.|++|+..+.     ..+++++.+|+.+.. 
T Consensus       287 ~~vl~~l~--~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~-----~~~v~~~~~d~~~~l~  359 (443)
T PRK13168        287 ARALEWLD--PQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNG-----LDNVTFYHANLEEDFT  359 (443)
T ss_pred             HHHHHHhc--CCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEEeChHHhhh
Confidence            34444443  467889999999999999999987  99999999999999999998733     458999999986532 


Q ss_pred             ---CCCCCeeEEEEccChH---HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         199 ---AEGGPYDVIFFGAGTT---EVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       199 ---~~~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                         ..+++||+|++|.+..   .+++.+.+ ++|++.+++++.+..
T Consensus       360 ~~~~~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvSCnp~t  404 (443)
T PRK13168        360 DQPWALGGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVSCNPAT  404 (443)
T ss_pred             hhhhhcCCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEEeChHH
Confidence               1235799999997754   44444444 689999999997764

>PLN03075 nicotianamine synthase; Provisional

Probab=99.21  E-value=2.5e-10  Score=108.17  Aligned_cols=99  Identities=18%  Similarity=0.142  Sum_probs=77.0

Q ss_pred             CCCCEEEEECCCccHHH-HHHH-cc----eEEEEeCCHHHHHHHHHHHHh-cCCCCCCCCCEEEEEcCCCCCCCCCCCee
Q psy7830         133 QNGSRVLDIGSGQGYMA-TAKE-WL----SSVRQLLLPETLNNSLKNIKI-SRPDLLQSKTLEFILKDARWGHAEGGPYD  205 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a-~~la-~~----~V~~vDis~~~l~~a~~~~~~-~~~~~l~~~~v~~~~~D~~~~~~~~~~fD  205 (364)
                      .++.+|+|||||+|.++ +.++ ..    +++++|+|+++++.|++++.. ..   + .++++|..+|+.+.....+.||
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g---L-~~rV~F~~~Da~~~~~~l~~FD  197 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD---L-SKRMFFHTADVMDVTESLKEYD  197 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC---c-cCCcEEEECchhhcccccCCcC
Confidence            37789999999988554 3333 22    799999999999999999854 21   2 2479999999987643346899


Q ss_pred             EEEEccCh-------HHHHHHHHhccCCCcEEEEEEc
Q psy7830         206 VIFFGAGT-------TEVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       206 ~Ii~~~~~-------~~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      +|++....       ..+++.+.+.|+|||.+++...
T Consensus       198 lVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~  234 (296)
T PLN03075        198 VVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA  234 (296)
T ss_pred             EEEEecccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence            99998421       2478999999999999998774

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.20  E-value=1.6e-10  Score=107.24  Aligned_cols=121  Identities=21%  Similarity=0.241  Sum_probs=92.7

Q ss_pred             CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC
Q psy7830         112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT  186 (364)
Q Consensus       112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~  186 (364)
                      .+-+--|.-.+.++.++.  +.||++|||.|.|||.++..+++.     +|+.+|+.++.++.|++|++...   + .++
T Consensus        20 rtQIiYpkD~~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g---l-~~~   93 (247)
T PF08704_consen   20 RTQIIYPKDISYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG---L-DDN   93 (247)
T ss_dssp             SS----HHHHHHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT---C-CTT
T ss_pred             CcceeeCchHHHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC---C-CCC
Confidence            444555666788888888  899999999999999999999976     99999999999999999999832   2 258


Q ss_pred             EEEEEcCCCCCCCC---CCCeeEEEEccChHH-HHHHHHhcc-CCCcEEEEEEcCCC
Q psy7830         187 LEFILKDARWGHAE---GGPYDVIFFGAGTTE-VSKTILSQL-KPNGRIVAPVGNVW  238 (364)
Q Consensus       187 v~~~~~D~~~~~~~---~~~fD~Ii~~~~~~~-l~~~l~~~L-kpGG~Lvi~~~~~~  238 (364)
                      +++...|+....+.   ...+|.|+.+.+-+| .++.+.+.| |+||++++-.+.-.
T Consensus        94 v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie  150 (247)
T PF08704_consen   94 VTVHHRDVCEEGFDEELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSPCIE  150 (247)
T ss_dssp             EEEEES-GGCG--STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEESSHH
T ss_pred             ceeEecceecccccccccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCHH
Confidence            99999998643221   257999999999887 788999999 89999998887754

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.20  E-value=2.3e-10  Score=103.90  Aligned_cols=105  Identities=24%  Similarity=0.309  Sum_probs=83.9

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      ..+++.+.  ..++.+|||+|||+|..+..+++.     +++++|+++.+++.++++...       ..++++..+|+.+
T Consensus        29 ~~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~-------~~~i~~~~~d~~~   99 (223)
T TIGR01934        29 RRAVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL-------PLNIEFIQADAEA   99 (223)
T ss_pred             HHHHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc-------CCCceEEecchhc
Confidence            44555554  357899999999999999988866     799999999999999988642       2478899999887


Q ss_pred             CCCCCCCeeEEEEccChH------HHHHHHHhccCCCcEEEEEEc
Q psy7830         197 GHAEGGPYDVIFFGAGTT------EVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       197 ~~~~~~~fD~Ii~~~~~~------~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      .....++||+|+++..++      .+++.+.+.|+|||++++...
T Consensus       100 ~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  144 (223)
T TIGR01934       100 LPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEF  144 (223)
T ss_pred             CCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence            665456899998876543      467899999999999997543

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.19  E-value=1.3e-10  Score=109.41  Aligned_cols=103  Identities=17%  Similarity=0.167  Sum_probs=75.5

Q ss_pred             CCCEEEEECCCccH----HHHHHHc--------c-eEEEEeCCHHHHHHHHHHHHh-----cCC------------C--C
Q psy7830         134 NGSRVLDIGSGQGY----MATAKEW--------L-SSVRQLLLPETLNNSLKNIKI-----SRP------------D--L  181 (364)
Q Consensus       134 ~g~~VLDiGcGsG~----~a~~la~--------~-~V~~vDis~~~l~~a~~~~~~-----~~~------------~--~  181 (364)
                      ++.+|+|+|||+|.    +++.+++        . +|+|+|+|+.|++.|++..-.     +..            +  .
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45799999999996    4444443        2 799999999999999985411     000            0  0


Q ss_pred             C---CCCCEEEEEcCCCCCCCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEcC
Q psy7830         182 L---QSKTLEFILKDARWGHAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       182 l---~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +   -..+|+|.+.|+.+.++..++||+|++..++.+        +++++.+.|+|||+|++....
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E  244 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSE  244 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcc
Confidence            0   013689999999887655678999999776643        678999999999999975544

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.19  E-value=3.8e-10  Score=103.06  Aligned_cols=114  Identities=18%  Similarity=0.172  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHhcc--CCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830         118 PSYIARCLEQLVDH--LQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD  193 (364)
Q Consensus       118 P~~~a~~l~~L~~~--l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D  193 (364)
                      +..+..+.+.+..+  ...+.+|||+|||+|.++..+++.  +++++|+++.+++.+++++....     ..++++...|
T Consensus        27 ~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d  101 (224)
T TIGR01983        27 PLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDP-----LLKIEYRCTS  101 (224)
T ss_pred             HHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEeCC
Confidence            33445556655532  124789999999999999988877  99999999999999999887622     2368888888


Q ss_pred             CCCCCCC-CCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830         194 ARWGHAE-GGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       194 ~~~~~~~-~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +...... .++||+|+++..+++      ++..+.+.|++||.+++....
T Consensus       102 ~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~  151 (224)
T TIGR01983       102 VEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTIN  151 (224)
T ss_pred             HHHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence            7765433 368999998766653      678999999999999987654

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.19  E-value=1.2e-10  Score=112.39  Aligned_cols=118  Identities=13%  Similarity=0.072  Sum_probs=88.0

Q ss_pred             ChHHHHHHHHHHHhccC--CCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830         116 EPPSYIARCLEQLVDHL--QNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL  191 (364)
Q Consensus       116 s~P~~~a~~l~~L~~~l--~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~  191 (364)
                      ..+.....+++.+.+.+  .++.+|||+|||+|.++..++..  +|+|+|+++.+++.|++|++.+.     .++++++.
T Consensus       153 ~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~-----l~~v~~~~  227 (315)
T PRK03522        153 TNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELG-----LTNVQFQA  227 (315)
T ss_pred             cCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEE
Confidence            34444455444333222  35789999999999999999988  99999999999999999998833     46899999


Q ss_pred             cCCCCCCC-CCCCeeEEEEccChHHHH---HHHHhccCCCcEEEEEEcCCC
Q psy7830         192 KDARWGHA-EGGPYDVIFFGAGTTEVS---KTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       192 ~D~~~~~~-~~~~fD~Ii~~~~~~~l~---~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      +|+..... ..+.||+|++|.+...+.   ..+...++|++++++++.+..
T Consensus       228 ~D~~~~~~~~~~~~D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t  278 (315)
T PRK03522        228 LDSTQFATAQGEVPDLVLVNPPRRGIGKELCDYLSQMAPRFILYSSCNAQT  278 (315)
T ss_pred             cCHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHcCCCeEEEEECCccc
Confidence            99876432 235799999997754322   233444688999999998865

>PTZ00146 fibrillarin; Provisional

Probab=99.18  E-value=1.9e-10  Score=108.68  Aligned_cols=109  Identities=19%  Similarity=0.205  Sum_probs=80.4

Q ss_pred             HHHHHHHHHhcc-CCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830         120 YIARCLEQLVDH-LQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD  193 (364)
Q Consensus       120 ~~a~~l~~L~~~-l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D  193 (364)
                      +.+.++.-+... ++++++|||+|||+|+++..++..     .|+++|+++.+.+...+.+..       .+||.++..|
T Consensus       117 laa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-------r~NI~~I~~D  189 (293)
T PTZ00146        117 LAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-------RPNIVPIIED  189 (293)
T ss_pred             HHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-------cCCCEEEECC
Confidence            445554444322 689999999999999999999987     799999999876555544433       1488999999


Q ss_pred             CCCCC---CCCCCeeEEEEccChHH----HHHHHHhccCCCcEEEEEEc
Q psy7830         194 ARWGH---AEGGPYDVIFFGAGTTE----VSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       194 ~~~~~---~~~~~fD~Ii~~~~~~~----l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      +....   ...+.||+|+++....+    +..++.+.|||||.+++.+.
T Consensus       190 a~~p~~y~~~~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ik  238 (293)
T PTZ00146        190 ARYPQKYRMLVPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFIISIK  238 (293)
T ss_pred             ccChhhhhcccCCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEEEe
Confidence            86421   11357999999876432    45678899999999999643

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.18  E-value=2.7e-10  Score=109.41  Aligned_cols=105  Identities=19%  Similarity=0.197  Sum_probs=82.1

Q ss_pred             HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      ...+++.+.  +.++.+|||+|||+|.++..+++.    +++++|. +.+++.+++++....   + .++++++.+|+..
T Consensus       138 ~~~l~~~~~--~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g---l-~~rv~~~~~d~~~  210 (306)
T TIGR02716       138 IQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG---V-ADRMRGIAVDIYK  210 (306)
T ss_pred             HHHHHHHcC--CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC---c-cceEEEEecCccC
Confidence            344555554  577889999999999999999877    8999997 799999999988722   1 2479999999875


Q ss_pred             CCCCCCCeeEEEEccChH--------HHHHHHHhccCCCcEEEEEE
Q psy7830         197 GHAEGGPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       197 ~~~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ...  ..+|+|++...++        .+++++.+.|+|||++++..
T Consensus       211 ~~~--~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d  254 (306)
T TIGR02716       211 ESY--PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD  254 (306)
T ss_pred             CCC--CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            433  2479987655443        36789999999999999865

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=99.18  E-value=1.6e-11  Score=116.62  Aligned_cols=175  Identities=21%  Similarity=0.142  Sum_probs=125.1

Q ss_pred             eeccCCCccchhhhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCCC--CccCCCc----cccccCCCceecCCCccC
Q psy7830          43 RSEMYDEDNENEENFFYTRSYADFLEGLKERKLLNHPRVEEAFYAVRRA--DFINVKP----KFGFCDIPYAFANQVVME  116 (364)
Q Consensus        43 ~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~a~~~v~R~--~~~p~~~----~~~y~d~~l~ig~g~~~s  116 (364)
                      +.+.+..++...|+|+.+.+++++.+.|.+.|....+.     ...+-.  .......    ...|.++.+.+++.+++ 
T Consensus         2 l~~~n~~~~~~iRvN~~k~~~~~~~~~L~~~g~~~~~~-----~~~~~~~~~~~~~~~~i~~l~~~~~G~~~vQd~sS~-   75 (283)
T PF01189_consen    2 LEANNCPPPVTIRVNTLKISREELLEELEEEGIQLEPI-----PRSPDALRVIGKSPYSICSLPEFKNGLFYVQDESSQ-   75 (283)
T ss_dssp             HHHCTS--GEEEEE-TTTSSHHHHHHHHHHTTHEEEEE-----TSTTCEEEEEEECSSCGGGSHHHHTTSEEEHHHHHH-
T ss_pred             ccccCCCCCeEEEECcCcCCHHHHHHHHhhcccceEEc-----ccccchhccccccccchhhchhhhCCcEEecccccc-
Confidence            34566677778899999999999999998887321110     000000  0011111    04677888888776544 


Q ss_pred             hHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830         117 PPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL  191 (364)
Q Consensus       117 ~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~  191 (364)
                         +.+..+   .  ..+|.+|||+++|+|..+..++..     .|++.|+++..+...++|+++     +|..++.+..
T Consensus        76 ---l~~~~L---~--~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r-----~g~~~v~~~~  142 (283)
T PF01189_consen   76 ---LVALAL---D--PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKR-----LGVFNVIVIN  142 (283)
T ss_dssp             ---HHHHHH---T--TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHH-----TT-SSEEEEE
T ss_pred             ---cccccc---c--ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHh-----cCCceEEEEe
Confidence               444333   3  689999999999999999999887     899999999999999999999     5667899988


Q ss_pred             cCCCCCC--CCCCCeeEEEEccChHH----------------------------HHHHHHhcc----CCCcEEEEEEcC
Q psy7830         192 KDARWGH--AEGGPYDVIFFGAGTTE----------------------------VSKTILSQL----KPNGRIVAPVGN  236 (364)
Q Consensus       192 ~D~~~~~--~~~~~fD~Ii~~~~~~~----------------------------l~~~l~~~L----kpGG~Lvi~~~~  236 (364)
                      .|.....  .....||.|+++.+|..                            ++....+.+    ||||+||.++-+
T Consensus       143 ~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS  221 (283)
T PF01189_consen  143 ADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS  221 (283)
T ss_dssp             SHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred             eccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence            8876542  11236999999988732                            567888999    999999999855

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PLN02672 methionine S-methyltransferase

Probab=99.17  E-value=4.1e-10  Score=122.46  Aligned_cols=138  Identities=15%  Similarity=0.098  Sum_probs=102.6

Q ss_pred             ccccCCCceecCCCccChHHHHHHHHHHHhccCC---CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHH
Q psy7830         100 FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQ---NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLK  172 (364)
Q Consensus       100 ~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~---~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~  172 (364)
                      ..|....+.++.+..+++|.+. .+++.|..+..   ++.+|||+|||+|.+++.+++.    +|+++|+|+.+++.|++
T Consensus        82 ~~F~~l~~~V~p~VLIPRpeTE-~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~  160 (1082)
T PLN02672         82 RNRKKLTMMEIPSIFIPEDWSF-TFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWI  160 (1082)
T ss_pred             EEecCCceeeCCCcccCchhHH-HHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence            4566677788889999999874 44555543211   2468999999999999999875    89999999999999999


Q ss_pred             HHHhcCCCC-----------CCCCCEEEEEcCCCCCCCC-CCCeeEEEEccChH--------------------------
Q psy7830         173 NIKISRPDL-----------LQSKTLEFILKDARWGHAE-GGPYDVIFFGAGTT--------------------------  214 (364)
Q Consensus       173 ~~~~~~~~~-----------l~~~~v~~~~~D~~~~~~~-~~~fD~Ii~~~~~~--------------------------  214 (364)
                      |+..|.-..           ...++++++.+|....... ..+||+|++|.+.-                          
T Consensus       161 Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p  240 (1082)
T PLN02672        161 NLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSN  240 (1082)
T ss_pred             HHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCc
Confidence            998742000           0124799999998765432 23699999986630                          


Q ss_pred             ------------------HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         215 ------------------EVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       215 ------------------~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                                        .+.....+.|+|||.+++.++...
T Consensus       241 ~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q  282 (1082)
T PLN02672        241 YCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRP  282 (1082)
T ss_pred             cccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccH
Confidence                              133566679999999999998765

>PRK00811 spermidine synthase; Provisional

Probab=99.17  E-value=1.7e-10  Score=109.68  Aligned_cols=105  Identities=21%  Similarity=0.176  Sum_probs=81.9

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC-CCCCeeEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA-EGGPYDVI  207 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~-~~~~fD~I  207 (364)
                      ....+||++|||+|..+..+++.    +|+++|+|+.+++.|++.+..........++++++.+|+..... ..++||+|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            45679999999999999988876    89999999999999999886511001234689999999876543 24689999


Q ss_pred             EEccCh----------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         208 FFGAGT----------TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       208 i~~~~~----------~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +++..-          ..+.+.+.+.|+|||++++.....
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~  194 (283)
T PRK00811        155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSP  194 (283)
T ss_pred             EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence            997532          235678999999999999876553

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.17  E-value=4.5e-10  Score=102.79  Aligned_cols=101  Identities=15%  Similarity=0.037  Sum_probs=74.7

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhc-C------CCCCCCCCEEEEEcCCCCCCCCC-
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKIS-R------PDLLQSKTLEFILKDARWGHAEG-  201 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~-~------~~~l~~~~v~~~~~D~~~~~~~~-  201 (364)
                      +.++.+|||+|||.|..+..||..  +|+|+|+++.+++.+.+..... .      .......+|++.++|+.+..... 
T Consensus        35 ~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~  114 (218)
T PRK13255         35 LPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL  114 (218)
T ss_pred             CCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence            456789999999999999999999  9999999999999874321110 0      00011247999999998775432 


Q ss_pred             CCeeEEEEccChHH--------HHHHHHhccCCCcEEEE
Q psy7830         202 GPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVA  232 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi  232 (364)
                      +.||.|+-...+.+        ....+.++|+|||++++
T Consensus       115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence            57999986555433        46889999999997554

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.16  E-value=2.9e-10  Score=112.81  Aligned_cols=102  Identities=21%  Similarity=0.221  Sum_probs=80.9

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC----CCCCee
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA----EGGPYD  205 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~----~~~~fD  205 (364)
                      .+|.+|||+|||+|.+++.++..   +|+++|+|+.+++.|++|+..|.   ++..+++++.+|+.+...    ..++||
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ng---l~~~~v~~i~~D~~~~l~~~~~~~~~fD  295 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNK---LDLSKAEFVRDDVFKLLRTYRDRGEKFD  295 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCCcEEEEEccHHHHHHHHHhcCCCCC
Confidence            46889999999999999876554   89999999999999999998854   333479999999876532    235799


Q ss_pred             EEEEccCh---------------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         206 VIFFGAGT---------------TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       206 ~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +|++|.+.               ..+.....++|+|||.|+......
T Consensus       296 lVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~  342 (396)
T PRK15128        296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSG  342 (396)
T ss_pred             EEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            99999764               123456789999999999766543

>PRK04457 spermidine synthase; Provisional

Probab=99.16  E-value=3.2e-10  Score=106.62  Aligned_cols=100  Identities=17%  Similarity=0.165  Sum_probs=79.5

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC-CCCeeEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE-GGPYDVI  207 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD~I  207 (364)
                      .++.+|||||||+|.++..+++.    +|+++|+++++++.|++++....    ..++++++.+|+.+.... .++||+|
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~----~~~rv~v~~~Da~~~l~~~~~~yD~I  140 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE----NGERFEVIEADGAEYIAVHRHSTDVI  140 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC----CCCceEEEECCHHHHHHhCCCCCCEE
Confidence            45679999999999999988776    89999999999999999875411    125899999998654322 3579999


Q ss_pred             EEccCh----------HHHHHHHHhccCCCcEEEEEEcC
Q psy7830         208 FFGAGT----------TEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       208 i~~~~~----------~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +++..-          ..+++.+.+.|+|||++++.+..
T Consensus       141 ~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~  179 (262)
T PRK04457        141 LVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS  179 (262)
T ss_pred             EEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence            986421          35778999999999999986543

>KOG1271|consensus

Probab=99.15  E-value=1.8e-10  Score=100.04  Aligned_cols=117  Identities=17%  Similarity=0.174  Sum_probs=88.0

Q ss_pred             HHHHHHHhccCC-----C-CCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEE
Q psy7830         122 ARCLEQLVDHLQ-----N-GSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFI  190 (364)
Q Consensus       122 a~~l~~L~~~l~-----~-g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~  190 (364)
                      .++++||.++..     . ..+|||+|||+|.+...|++.    ..+|+|.++.+++.|+..+++..     .+| |+|.
T Consensus        49 ~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~-----~~n~I~f~  123 (227)
T KOG1271|consen   49 ERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG-----FSNEIRFQ  123 (227)
T ss_pred             HHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC-----CCcceeEE
Confidence            556666654432     2 339999999999999999987    69999999999999988777732     344 9999


Q ss_pred             EcCCCCCCCCCCCeeEEEEccChH--------------HHHHHHHhccCCCcEEEEEEcCCCcceEE
Q psy7830         191 LKDARWGHAEGGPYDVIFFGAGTT--------------EVSKTILSQLKPNGRIVAPVGNVWRQNLS  243 (364)
Q Consensus       191 ~~D~~~~~~~~~~fD~Ii~~~~~~--------------~l~~~l~~~LkpGG~Lvi~~~~~~~~~l~  243 (364)
                      +.|+.......++||+|+--..+.              -.+..+.++|+|||+++|..-+....++.
T Consensus       124 q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv  190 (227)
T KOG1271|consen  124 QLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELV  190 (227)
T ss_pred             EeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHH
Confidence            999987654457899886332221              13567889999999999988876654443

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.15  E-value=4.2e-10  Score=102.23  Aligned_cols=107  Identities=26%  Similarity=0.327  Sum_probs=85.8

Q ss_pred             HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE-cCC
Q psy7830         121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL-KDA  194 (364)
Q Consensus       121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~-~D~  194 (364)
                      +..++..|.. ..+..+|||||++.||.+++++..     +++++|+++++.+.|++|+++..   + .++|+++. +|+
T Consensus        47 ~g~~L~~L~~-~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag---~-~~~i~~~~~gda  121 (219)
T COG4122          47 TGALLRLLAR-LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG---V-DDRIELLLGGDA  121 (219)
T ss_pred             HHHHHHHHHH-hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC---C-cceEEEEecCcH
Confidence            3555555553 567889999999999999999987     79999999999999999999922   2 23588888 587


Q ss_pred             CCCCC--CCCCeeEEEEccCh---HHHHHHHHhccCCCcEEEE
Q psy7830         195 RWGHA--EGGPYDVIFFGAGT---TEVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       195 ~~~~~--~~~~fD~Ii~~~~~---~~l~~~l~~~LkpGG~Lvi  232 (364)
                      .+...  ..++||+||.+..-   ...++.+.++|+|||.+|+
T Consensus       122 l~~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~  164 (219)
T COG4122         122 LDVLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVA  164 (219)
T ss_pred             HHHHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEE
Confidence            65443  25799999998765   4577889999999999986

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.14  E-value=5.2e-10  Score=103.00  Aligned_cols=99  Identities=20%  Similarity=0.194  Sum_probs=80.1

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC-CCCCeeEEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA-EGGPYDVIF  208 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~-~~~~fD~Ii  208 (364)
                      ..++.+|||+|||+|.++..+++.  +|+++|+++.+++.+++++....      .++.+...|...... ..++||+|+
T Consensus        46 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~fD~Ii  119 (233)
T PRK05134         46 GLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESG------LKIDYRQTTAEELAAEHPGQFDVVT  119 (233)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcC------CceEEEecCHHHhhhhcCCCccEEE
Confidence            457889999999999999988877  99999999999999999886622      257788888765531 246899999


Q ss_pred             EccChH------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         209 FGAGTT------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       209 ~~~~~~------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ++..++      .++..+.+.|+|||++++....
T Consensus       120 ~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~  153 (233)
T PRK05134        120 CMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN  153 (233)
T ss_pred             EhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence            876554      3678999999999999987654

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.14  E-value=2.5e-10  Score=103.86  Aligned_cols=90  Identities=18%  Similarity=0.175  Sum_probs=70.9

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--------
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH--------  198 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~--------  198 (364)
                      ++++.+|||+|||+|.++..+++.     +|+++|+++ +        ..       .++++++++|+....        
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~~-------~~~v~~i~~D~~~~~~~~~i~~~  112 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------DP-------IVGVDFLQGDFRDELVLKALLER  112 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------cC-------CCCcEEEecCCCChHHHHHHHHH
Confidence            578999999999999999888775     799999998 1        11       247899999988742        


Q ss_pred             CCCCCeeEEEEccCh-----------------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         199 AEGGPYDVIFFGAGT-----------------TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       199 ~~~~~fD~Ii~~~~~-----------------~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ...++||+|+++...                 ..++..+.+.|||||.+++.+...
T Consensus       113 ~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~  168 (209)
T PRK11188        113 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG  168 (209)
T ss_pred             hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence            235689999997632                 235688999999999999966543

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=4.3e-10  Score=98.67  Aligned_cols=93  Identities=23%  Similarity=0.256  Sum_probs=74.2

Q ss_pred             CccChHHHHHHHHHHHh-ccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEE
Q psy7830         113 VVMEPPSYIARCLEQLV-DHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLE  188 (364)
Q Consensus       113 ~~~s~P~~~a~~l~~L~-~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~  188 (364)
                      |..+.+.+++.++.... .-.-.|.+|+|+|||||.+++..+-+   +|+|+|+|+++++.+++|+.++.      .+++
T Consensus        23 QY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~------g~v~   96 (198)
T COG2263          23 QYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL------GDVE   96 (198)
T ss_pred             ecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC------CceE
Confidence            44455556666665553 11246778999999999999888877   99999999999999999998832      4899


Q ss_pred             EEEcCCCCCCCCCCCeeEEEEccChH
Q psy7830         189 FILKDARWGHAEGGPYDVIFFGAGTT  214 (364)
Q Consensus       189 ~~~~D~~~~~~~~~~fD~Ii~~~~~~  214 (364)
                      ++.+|+...   .+++|.++.|.++-
T Consensus        97 f~~~dv~~~---~~~~dtvimNPPFG  119 (198)
T COG2263          97 FVVADVSDF---RGKFDTVIMNPPFG  119 (198)
T ss_pred             EEEcchhhc---CCccceEEECCCCc
Confidence            999999766   35799999998873

>PLN02476 O-methyltransferase

Probab=99.14  E-value=3.7e-10  Score=106.40  Aligned_cols=107  Identities=20%  Similarity=0.256  Sum_probs=86.1

Q ss_pred             HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC
Q psy7830         121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR  195 (364)
Q Consensus       121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~  195 (364)
                      ...++..+.. ..+..+|||+|||+|+.+++++..     +|+++|.+++.++.|++++++..   +. ++|+++.+|+.
T Consensus       106 ~g~lL~~L~~-~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG---l~-~~I~li~GdA~  180 (278)
T PLN02476        106 QAQLLAMLVQ-ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG---VS-HKVNVKHGLAA  180 (278)
T ss_pred             HHHHHHHHHH-hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CC-CcEEEEEcCHH
Confidence            3555665553 556889999999999999999874     89999999999999999999832   22 58999999986


Q ss_pred             CCCCC------CCCeeEEEEccChH---HHHHHHHhccCCCcEEEE
Q psy7830         196 WGHAE------GGPYDVIFFGAGTT---EVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       196 ~~~~~------~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi  232 (364)
                      +....      .++||+|+.+..-.   ..++.+.++|+|||.+++
T Consensus       181 e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~  226 (278)
T PLN02476        181 ESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVM  226 (278)
T ss_pred             HHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            54321      25899999998764   456788899999999886

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.12  E-value=2e-10  Score=104.02  Aligned_cols=109  Identities=28%  Similarity=0.344  Sum_probs=84.7

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA  194 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~  194 (364)
                      ....++..+.. .....+||||||++||.+++++..     +|+++|++++..+.|++++++..   + .++|+++.+|+
T Consensus        32 ~~g~lL~~l~~-~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag---~-~~~I~~~~gda  106 (205)
T PF01596_consen   32 ETGQLLQMLVR-LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG---L-DDRIEVIEGDA  106 (205)
T ss_dssp             HHHHHHHHHHH-HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT---G-GGGEEEEES-H
T ss_pred             HHHHHHHHHHH-hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC---C-CCcEEEEEecc
Confidence            34566666653 456679999999999999999975     99999999999999999998822   2 25899999998


Q ss_pred             CCCCC----C--CCCeeEEEEccChH---HHHHHHHhccCCCcEEEEE
Q psy7830         195 RWGHA----E--GGPYDVIFFGAGTT---EVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       195 ~~~~~----~--~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~  233 (364)
                      .+...    .  .++||+|+.+..-.   ..++.+.++|+|||.+++-
T Consensus       107 ~~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~D  154 (205)
T PF01596_consen  107 LEVLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIAD  154 (205)
T ss_dssp             HHHHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HhhHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEc
Confidence            65321    1  25799999998764   3567788999999999863

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK06202 hypothetical protein; Provisional

Probab=99.12  E-value=5.5e-10  Score=103.00  Aligned_cols=92  Identities=16%  Similarity=0.078  Sum_probs=68.4

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc--------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCe
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL--------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPY  204 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~--------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~f  204 (364)
                      .++.+|||+|||+|.++..+++.        +|+|+|+++.|++.|+++...        .++++...++......+++|
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~--------~~~~~~~~~~~~l~~~~~~f  130 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR--------PGVTFRQAVSDELVAEGERF  130 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc--------CCCeEEEEecccccccCCCc
Confidence            56789999999999998887641        899999999999999887543        34566666554444345789


Q ss_pred             eEEEEccChHH--------HHHHHHhccCCCcEEEEEE
Q psy7830         205 DVIFFGAGTTE--------VSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       205 D~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~  234 (364)
                      |+|+++..+++        +++++.+.++  |.+++..
T Consensus       131 D~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~d  166 (232)
T PRK06202        131 DVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHND  166 (232)
T ss_pred             cEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEec
Confidence            99999988765        4567777777  4444443

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.12  E-value=1.1e-09  Score=100.46  Aligned_cols=89  Identities=18%  Similarity=0.195  Sum_probs=68.5

Q ss_pred             HHHHHHHHHhcc-CCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         120 YIARCLEQLVDH-LQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       120 ~~a~~l~~L~~~-l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      +...+++++... ..++.+|||+|||+|.++..+++.  +|+++|+++.+++.|++++....   . ..++.+..+|...
T Consensus        48 ~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~---~-~~~i~~~~~d~~~  123 (230)
T PRK07580         48 MRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAG---L-AGNITFEVGDLES  123 (230)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC---C-ccCcEEEEcCchh
Confidence            445566666521 356789999999999999999877  99999999999999999887622   1 1478999999432


Q ss_pred             CCCCCCCeeEEEEccChHH
Q psy7830         197 GHAEGGPYDVIFFGAGTTE  215 (364)
Q Consensus       197 ~~~~~~~fD~Ii~~~~~~~  215 (364)
                         ..++||+|++...+++
T Consensus       124 ---~~~~fD~v~~~~~l~~  139 (230)
T PRK07580        124 ---LLGRFDTVVCLDVLIH  139 (230)
T ss_pred             ---ccCCcCEEEEcchhhc
Confidence               2468999998877643

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.11  E-value=4.1e-10  Score=119.56  Aligned_cols=102  Identities=18%  Similarity=0.191  Sum_probs=83.4

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC-CCCeeEEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE-GGPYDVIF  208 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD~Ii  208 (364)
                      .+|.+|||+|||+|.+++.++..   +|+++|+|+.+++.|++|+..|.   +...+++++++|+.+.... ..+||+|+
T Consensus       537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng---~~~~~v~~i~~D~~~~l~~~~~~fDlIi  613 (702)
T PRK11783        537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNG---LSGRQHRLIQADCLAWLKEAREQFDLIF  613 (702)
T ss_pred             cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCccceEEEEccHHHHHHHcCCCcCEEE
Confidence            45889999999999999999976   79999999999999999998854   3324799999998754321 35899999


Q ss_pred             EccCh-----------------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         209 FGAGT-----------------TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       209 ~~~~~-----------------~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +|.+.                 ..+...+.++|+|||.++++....
T Consensus       614 lDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~  659 (702)
T PRK11783        614 IDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR  659 (702)
T ss_pred             ECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            98763                 235677889999999999877654

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.10  E-value=1.2e-09  Score=85.13  Aligned_cols=92  Identities=25%  Similarity=0.249  Sum_probs=74.6

Q ss_pred             EEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC-CCCCeeEEEEccC
Q psy7830         137 RVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA-EGGPYDVIFFGAG  212 (364)
Q Consensus       137 ~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~-~~~~fD~Ii~~~~  212 (364)
                      +|+|+|||+|..+..++..   +++++|+++.+++.+++....+     ...++.++..|..+... ..++||+|+++.+
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~   75 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-----LADNVEVLKGDAEELPPEADESFDVIISDPP   75 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-----cccceEEEEcChhhhccccCCceEEEEEccc
Confidence            4899999999999988874   9999999999999998644331     23578999999877653 3468999999887


Q ss_pred             hH-------HHHHHHHhccCCCcEEEEE
Q psy7830         213 TT-------EVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       213 ~~-------~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ++       .+++.+.+.|++||.+++.
T Consensus        76 ~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          76 LHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             eeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            63       3668888999999999976

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PLN02366 spermidine synthase

Probab=99.10  E-value=7.7e-10  Score=106.16  Aligned_cols=103  Identities=16%  Similarity=0.172  Sum_probs=81.8

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHh-cCCCCCCCCCEEEEEcCCCCCCCC--CCCee
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKI-SRPDLLQSKTLEFILKDARWGHAE--GGPYD  205 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~-~~~~~l~~~~v~~~~~D~~~~~~~--~~~fD  205 (364)
                      ....+||+||||.|..+..+++.    +|+.+|+|+.+++.+++.+.. +.  .+..++++++.+|+......  .++||
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~--~~~dpRv~vi~~Da~~~l~~~~~~~yD  167 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAV--GFDDPRVNLHIGDGVEFLKNAPEGTYD  167 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhcc--ccCCCceEEEEChHHHHHhhccCCCCC
Confidence            45789999999999999999876    899999999999999998765 11  13356899999998654322  35799


Q ss_pred             EEEEccCh----------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         206 VIFFGAGT----------TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       206 ~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +|+++...          ..+.+.+.+.|+|||+++....+.
T Consensus       168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~  209 (308)
T PLN02366        168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESM  209 (308)
T ss_pred             EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCc
Confidence            99997543          236788999999999998766543

>KOG1541|consensus

Probab=99.09  E-value=6.6e-10  Score=99.35  Aligned_cols=110  Identities=23%  Similarity=0.203  Sum_probs=86.6

Q ss_pred             hHHHHHHHHHHHhccCCC--CCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830         117 PPSYIARCLEQLVDHLQN--GSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK  192 (364)
Q Consensus       117 ~P~~~a~~l~~L~~~l~~--g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~  192 (364)
                      +-.+..++++.|.  ++.  ..-|||||||||..+..+...  ..+|+|||+.|++.|.++--+          -.++.+
T Consensus        33 Q~em~eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e----------gdlil~  100 (270)
T KOG1541|consen   33 QAEMAERALELLA--LPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE----------GDLILC  100 (270)
T ss_pred             hHHHHHHHHHHhh--CCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhh----------cCeeee
Confidence            4447899999987  555  567999999999999988877  899999999999999873211          236777


Q ss_pred             CCCCC-CCCCCCeeEEEEccChHH-----------------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830         193 DARWG-HAEGGPYDVIFFGAGTTE-----------------VSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       193 D~~~~-~~~~~~fD~Ii~~~~~~~-----------------l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      |+-.. ++..+.||-+|+..+++|                 +...++..|++|++.|+..-+..
T Consensus       101 DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen  164 (270)
T KOG1541|consen  101 DMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPEN  164 (270)
T ss_pred             ecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccc
Confidence            77543 455689999988776655                 34578899999999999887655

>TIGR03438 probable methyltransferase

Probab=99.09  E-value=9.6e-10  Score=105.47  Aligned_cols=113  Identities=17%  Similarity=0.127  Sum_probs=79.2

Q ss_pred             HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC
Q psy7830         121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR  195 (364)
Q Consensus       121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~  195 (364)
                      .......+...+.++.+|||+|||+|..+..+++.     +|+++|+|++|++.+++++....    ..-++.++++|+.
T Consensus        50 l~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~----p~~~v~~i~gD~~  125 (301)
T TIGR03438        50 LERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY----PQLEVHGICADFT  125 (301)
T ss_pred             HHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC----CCceEEEEEEccc
Confidence            34444444444567889999999999999888755     79999999999999999876521    1125777899987


Q ss_pred             CCCCCCC-----CeeEEEEccChH--------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         196 WGHAEGG-----PYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       196 ~~~~~~~-----~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +......     ...+++++..+.        .+++.+.+.|+|||.+++.+...
T Consensus       126 ~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~  180 (301)
T TIGR03438       126 QPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV  180 (301)
T ss_pred             chhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence            5321111     223444433322        36789999999999999877543

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PHA03412 putative methyltransferase; Provisional

Probab=99.08  E-value=7.8e-10  Score=101.32  Aligned_cols=109  Identities=13%  Similarity=0.066  Sum_probs=79.7

Q ss_pred             CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-------eEEEEeCCHHHHHHHHHHHHhcCCCCCCC
Q psy7830         112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-------SSVRQLLLPETLNNSLKNIKISRPDLLQS  184 (364)
Q Consensus       112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-------~V~~vDis~~~l~~a~~~~~~~~~~~l~~  184 (364)
                      |+..+.+.++..+...    ...+.+|||+|||+|.++..+++.       +|+++|+++.+++.|++|.          
T Consensus        31 GqFfTP~~iAr~~~i~----~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~----------   96 (241)
T PHA03412         31 GAFFTPIGLARDFTID----ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV----------   96 (241)
T ss_pred             CccCCCHHHHHHHHHh----ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc----------
Confidence            6666666665555422    234779999999999999988752       8999999999999999875          


Q ss_pred             CCEEEEEcCCCCCCCCCCCeeEEEEccChH------------------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         185 KTLEFILKDARWGHAEGGPYDVIFFGAGTT------------------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       185 ~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~------------------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      .++.++.+|+..... +++||+|++|.++.                  .++....+++++|+ +|++...
T Consensus        97 ~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~ILP~~~  164 (241)
T PHA03412         97 PEATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT-FIIPQMS  164 (241)
T ss_pred             cCCEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE-EEeCccc
Confidence            357888999875543 46899999998763                  14456666555555 5766544

>KOG2904|consensus

Probab=99.07  E-value=2.9e-09  Score=98.12  Aligned_cols=139  Identities=15%  Similarity=0.157  Sum_probs=99.8

Q ss_pred             CCccCCCccccccCCCceecCCCccChHHHH---HHHHHHHhcc-CCCCCEEEEECCCccHHHHHHHcc----eEEEEeC
Q psy7830          91 ADFINVKPKFGFCDIPYAFANQVVMEPPSYI---ARCLEQLVDH-LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLL  162 (364)
Q Consensus        91 ~~~~p~~~~~~y~d~~l~ig~g~~~s~P~~~---a~~l~~L~~~-l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDi  162 (364)
                      ..++-++   .|.|-.+....|..+.+|.+-   ..+++.+.+. ...+..+||+|||+|.++..+++.    +|+++|.
T Consensus       104 QYIlg~~---~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~  180 (328)
T KOG2904|consen  104 QYILGSQ---PFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDV  180 (328)
T ss_pred             hheeccC---ccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEec
Confidence            3444444   677777888889999999763   3333333211 124557999999999999988876    9999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC----CCC-CCCCCeeEEEEccChHH----------------------
Q psy7830         163 LPETLNNSLKNIKISRPDLLQSKTLEFILKDAR----WGH-AEGGPYDVIFFGAGTTE----------------------  215 (364)
Q Consensus       163 s~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~----~~~-~~~~~fD~Ii~~~~~~~----------------------  215 (364)
                      |+.++..|.+|+.+..   + ..++.++.-++.    ... ...+++|++++|.++-.                      
T Consensus       181 S~~Ai~La~eN~qr~~---l-~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdG  256 (328)
T KOG2904|consen  181 SKAAIKLAKENAQRLK---L-SGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDG  256 (328)
T ss_pred             cHHHHHHHHHHHHHHh---h-cCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhcc
Confidence            9999999999999832   2 246777754433    222 22478999999977611                      


Q ss_pred             ----------HHHHHHhccCCCcEEEEEEcC
Q psy7830         216 ----------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       216 ----------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                                +..-..++|+|||.+.+....
T Consensus       257 g~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~  287 (328)
T KOG2904|consen  257 GLEGYDNLVHYWLLATRMLQPGGFEQLELVE  287 (328)
T ss_pred             ccchhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence                      234667899999999999874

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.07  E-value=1.3e-09  Score=102.71  Aligned_cols=107  Identities=21%  Similarity=0.135  Sum_probs=76.4

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcCCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKDARWG  197 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D~~~~  197 (364)
                      .++...+.  .-.|.+|||||||+||.+..++..   .|+|+|.++...-+.+--..-     ++.+. +.+...-++++
T Consensus       105 ~rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~-----lg~~~~~~~lplgvE~L  177 (315)
T PF08003_consen  105 DRLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHF-----LGQDPPVFELPLGVEDL  177 (315)
T ss_pred             HHHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHH-----hCCCccEEEcCcchhhc
Confidence            44444443  246899999999999999999888   899999998876664332111     22223 33332334444


Q ss_pred             CCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830         198 HAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       198 ~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +. .+.||+|++-+++.|      .+..+++.|++||.||+.+..
T Consensus       178 p~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlv  221 (315)
T PF08003_consen  178 PN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLV  221 (315)
T ss_pred             cc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEee
Confidence            44 578999999988865      578999999999999987643

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.06  E-value=9.5e-10  Score=110.63  Aligned_cols=116  Identities=20%  Similarity=0.262  Sum_probs=86.8

Q ss_pred             hHHHHHHHHHHHhcc--CCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830         117 PPSYIARCLEQLVDH--LQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK  192 (364)
Q Consensus       117 ~P~~~a~~l~~L~~~--l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~  192 (364)
                      .+.....+++.+.+.  +.++.+|||+|||+|.+++.+++.  +|+++|+++.+++.|++|+..+.     ..|++++.+
T Consensus       273 N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~-----~~nv~~~~~  347 (431)
T TIGR00479       273 NSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNG-----IANVEFLAG  347 (431)
T ss_pred             CHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhC-----CCceEEEeC
Confidence            344444444443332  457789999999999999999987  99999999999999999998743     468999999


Q ss_pred             CCCCCCC----CCCCeeEEEEccCh----HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         193 DARWGHA----EGGPYDVIFFGAGT----TEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       193 D~~~~~~----~~~~fD~Ii~~~~~----~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      |+.+...    ...+||+|+++.+-    ..+++.+. .++|++.+++++.+..
T Consensus       348 d~~~~l~~~~~~~~~~D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvsc~p~t  400 (431)
T TIGR00479       348 TLETVLPKQPWAGQIPDVLLLDPPRKGCAAEVLRTII-ELKPERIVYVSCNPAT  400 (431)
T ss_pred             CHHHHHHHHHhcCCCCCEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEcCCHHH
Confidence            9865321    23469999998764    34555544 4889999999876543

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.06  E-value=7.5e-10  Score=98.82  Aligned_cols=89  Identities=22%  Similarity=0.245  Sum_probs=68.6

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--------
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH--------  198 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~--------  198 (364)
                      +++|.+|||+|||+|.++..++..     +|+++|+++.+         .       .++++++++|+.+..        
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~-------~~~i~~~~~d~~~~~~~~~l~~~   93 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------P-------IENVDFIRGDFTDEEVLNKIRER   93 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------c-------CCCceEEEeeCCChhHHHHHHHH
Confidence            578999999999999999888765     69999999864         1       136788888876532        


Q ss_pred             CCCCCeeEEEEccCh-----------------HHHHHHHHhccCCCcEEEEEEcC
Q psy7830         199 AEGGPYDVIFFGAGT-----------------TEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       199 ~~~~~fD~Ii~~~~~-----------------~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ...++||+|+++...                 ..++..+.+.|+|||++++....
T Consensus        94 ~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~  148 (188)
T TIGR00438        94 VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ  148 (188)
T ss_pred             hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence            224579999987531                 24677889999999999986543

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.05  E-value=9.8e-10  Score=98.58  Aligned_cols=94  Identities=16%  Similarity=0.209  Sum_probs=70.5

Q ss_pred             cCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC-C-CCCCCee
Q psy7830         131 HLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG-H-AEGGPYD  205 (364)
Q Consensus       131 ~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~-~-~~~~~fD  205 (364)
                      .++++.+|||+|||+|.++..++..   .++++|+++++++.++++            +++++.+|+... . ..+++||
T Consensus        10 ~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~------------~~~~~~~d~~~~l~~~~~~sfD   77 (194)
T TIGR02081        10 LIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR------------GVNVIQGDLDEGLEAFPDKSFD   77 (194)
T ss_pred             hcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc------------CCeEEEEEhhhcccccCCCCcC
Confidence            3567889999999999999888765   789999999999887641            466778887652 1 3346899


Q ss_pred             EEEEccChHHH---HHHHHhccCCCcEEEEEEcC
Q psy7830         206 VIFFGAGTTEV---SKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       206 ~Ii~~~~~~~l---~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +|+++..++++   ...+.++++++|.++++++.
T Consensus        78 ~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii~~p~  111 (194)
T TIGR02081        78 YVILSQTLQATRNPEEILDEMLRVGRHAIVSFPN  111 (194)
T ss_pred             EEEEhhHhHcCcCHHHHHHHHHHhCCeEEEEcCC
Confidence            99999888764   23344556667777777654

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.05  E-value=2e-09  Score=103.69  Aligned_cols=93  Identities=17%  Similarity=0.130  Sum_probs=69.7

Q ss_pred             HHHHHHHHHhcc-CCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         120 YIARCLEQLVDH-LQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       120 ~~a~~l~~L~~~-l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      ++..+++++... ..++.+|||+|||+|.++..+++.  +|+|+|+|+.|++.+++++........+..++++...|+..
T Consensus       129 ~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~  208 (315)
T PLN02585        129 TVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES  208 (315)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh
Confidence            556677777532 135789999999999999999988  99999999999999999986521000112468888888754


Q ss_pred             CCCCCCCeeEEEEccChHH
Q psy7830         197 GHAEGGPYDVIFFGAGTTE  215 (364)
Q Consensus       197 ~~~~~~~fD~Ii~~~~~~~  215 (364)
                      .   +++||+|++...+.|
T Consensus       209 l---~~~fD~Vv~~~vL~H  224 (315)
T PLN02585        209 L---SGKYDTVTCLDVLIH  224 (315)
T ss_pred             c---CCCcCEEEEcCEEEe
Confidence            3   468999998776644

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.05  E-value=9.5e-10  Score=108.61  Aligned_cols=126  Identities=10%  Similarity=0.040  Sum_probs=92.6

Q ss_pred             ceecCCC-ccChHHHHHHHHHHHhccC--CCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCC
Q psy7830         107 YAFANQV-VMEPPSYIARCLEQLVDHL--QNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDL  181 (364)
Q Consensus       107 l~ig~g~-~~s~P~~~a~~l~~L~~~l--~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~  181 (364)
                      +.+..++ ....+...+.+++.+...+  .++.+|||+|||+|.+++.++..  +|+++|+++.+++.|++|++.+.   
T Consensus       203 ~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~---  279 (374)
T TIGR02085       203 LVIRPQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLG---  279 (374)
T ss_pred             EEECCCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcC---
Confidence            4444443 3344455555555444322  35789999999999999999877  99999999999999999998843   


Q ss_pred             CCCCCEEEEEcCCCCCCCC-CCCeeEEEEccChHH----HHHHHHhccCCCcEEEEEEcCCC
Q psy7830         182 LQSKTLEFILKDARWGHAE-GGPYDVIFFGAGTTE----VSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       182 l~~~~v~~~~~D~~~~~~~-~~~fD~Ii~~~~~~~----l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                        .++++++.+|+...... ..+||+|++|.+...    +++.+. .++|++.++++..+..
T Consensus       280 --~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvsc~p~T  338 (374)
T TIGR02085       280 --LDNLSFAALDSAKFATAQMSAPELVLVNPPRRGIGKELCDYLS-QMAPKFILYSSCNAQT  338 (374)
T ss_pred             --CCcEEEEECCHHHHHHhcCCCCCEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEEeCHHH
Confidence              45899999998654321 246999999988653    334443 4799999999998765

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>KOG4300|consensus

Probab=99.05  E-value=5.7e-10  Score=98.84  Aligned_cols=96  Identities=20%  Similarity=0.238  Sum_probs=77.2

Q ss_pred             CEEEEECCCccHHHHHHHc--c-eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEE-EEEcCCCCCC-CCCCCeeEEEEc
Q psy7830         136 SRVLDIGSGQGYMATAKEW--L-SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLE-FILKDARWGH-AEGGPYDVIFFG  210 (364)
Q Consensus       136 ~~VLDiGcGsG~~a~~la~--~-~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~-~~~~D~~~~~-~~~~~fD~Ii~~  210 (364)
                      ..|||+|||||..-...-.  . +|+++|.++.|-+.+.+.+.++.     ..++. |+.++.++++ .++++||.|++.
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k-----~~~~~~fvva~ge~l~~l~d~s~DtVV~T  152 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK-----PLQVERFVVADGENLPQLADGSYDTVVCT  152 (252)
T ss_pred             cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc-----CcceEEEEeechhcCcccccCCeeeEEEE
Confidence            3579999999987766553  2 99999999999999999887732     24666 8999998877 357899999876


Q ss_pred             cCh------HHHHHHHHhccCCCcEEEEEEcC
Q psy7830         211 AGT------TEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       211 ~~~------~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ..+      ...+.++.++|||||++++..-.
T Consensus       153 lvLCSve~~~k~L~e~~rlLRpgG~iifiEHv  184 (252)
T KOG4300|consen  153 LVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHV  184 (252)
T ss_pred             EEEeccCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence            544      34789999999999999986644

>PHA03411 putative methyltransferase; Provisional

Probab=99.05  E-value=1.4e-09  Score=101.78  Aligned_cols=89  Identities=17%  Similarity=0.130  Sum_probs=68.2

Q ss_pred             CCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC
Q psy7830         111 NQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT  186 (364)
Q Consensus       111 ~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~  186 (364)
                      .|++.+.+.++...+  +.  ...+.+|||+|||+|.++..++..    +|+++|+++.+++.+++++          ++
T Consensus        45 ~G~FfTP~~i~~~f~--~~--~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~----------~~  110 (279)
T PHA03411         45 SGAFFTPEGLAWDFT--ID--AHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL----------PE  110 (279)
T ss_pred             ceeEcCCHHHHHHHH--hc--cccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----------cC
Confidence            466665555543332  22  345679999999999999888664    8999999999999998864          36


Q ss_pred             EEEEEcCCCCCCCCCCCeeEEEEccChH
Q psy7830         187 LEFILKDARWGHAEGGPYDVIFFGAGTT  214 (364)
Q Consensus       187 v~~~~~D~~~~~~~~~~fD~Ii~~~~~~  214 (364)
                      ++++.+|+..... ..+||+|++|.++.
T Consensus       111 v~~v~~D~~e~~~-~~kFDlIIsNPPF~  137 (279)
T PHA03411        111 AEWITSDVFEFES-NEKFDVVISNPPFG  137 (279)
T ss_pred             CEEEECchhhhcc-cCCCcEEEEcCCcc
Confidence            8899999987653 36899999998874

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.03  E-value=1.3e-09  Score=103.01  Aligned_cols=101  Identities=13%  Similarity=0.029  Sum_probs=78.9

Q ss_pred             ccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830         114 VMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL  191 (364)
Q Consensus       114 ~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~  191 (364)
                      ....+.++..+++.+.  +.++.+|||+|||+|.++..+++.  +|+++|+|+.+++.+++++..        ++++++.
T Consensus        24 fl~~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~--------~~v~~i~   93 (272)
T PRK00274         24 FLIDENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE--------DNLTIIE   93 (272)
T ss_pred             cCCCHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc--------CceEEEE
Confidence            3456667888888876  678899999999999999999988  999999999999999887632        5899999


Q ss_pred             cCCCCCCCCCCCeeEEEEccChHHHHHHHHhcc
Q psy7830         192 KDARWGHAEGGPYDVIFFGAGTTEVSKTILSQL  224 (364)
Q Consensus       192 ~D~~~~~~~~~~fD~Ii~~~~~~~l~~~l~~~L  224 (364)
                      +|+......+-.+|.|++|.++.--.+-+.+.|
T Consensus        94 ~D~~~~~~~~~~~~~vv~NlPY~iss~ii~~~l  126 (272)
T PRK00274         94 GDALKVDLSELQPLKVVANLPYNITTPLLFHLL  126 (272)
T ss_pred             ChhhcCCHHHcCcceEEEeCCccchHHHHHHHH
Confidence            999876543212589999988754333344444

>TIGR00417 speE spermidine synthase

Probab=99.02  E-value=1.4e-09  Score=102.66  Aligned_cols=102  Identities=20%  Similarity=0.175  Sum_probs=78.6

Q ss_pred             CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC-CCCeeEEE
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE-GGPYDVIF  208 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD~Ii  208 (364)
                      .+.+||++|||+|..+..+++.    +|+++|+++.+++.+++++.... ..+..++++++.+|+...... .++||+|+
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~-~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi  150 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLA-GSYDDPRVDLQIDDGFKFLADTENTFDVII  150 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhc-ccccCCceEEEECchHHHHHhCCCCccEEE
Confidence            4459999999999999888765    89999999999999999875511 013346789999998653322 36899999


Q ss_pred             EccC----------hHHHHHHHHhccCCCcEEEEEEcC
Q psy7830         209 FGAG----------TTEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       209 ~~~~----------~~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ++..          ....++.+.+.|+|||++++....
T Consensus       151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~  188 (270)
T TIGR00417       151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSES  188 (270)
T ss_pred             EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            8765          234567899999999999987544

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=99.02  E-value=3.2e-09  Score=99.29  Aligned_cols=105  Identities=22%  Similarity=0.171  Sum_probs=84.7

Q ss_pred             ccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830         114 VMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL  191 (364)
Q Consensus       114 ~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~  191 (364)
                      ++..+.++..+++.+.  ..++.+|||+|||+|.++..+++.  .|+++|+|+.+++.+++++..       .++++++.
T Consensus        11 fl~d~~i~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~-------~~~v~v~~   81 (253)
T TIGR00755        11 FLIDESVIQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL-------YERLEVIE   81 (253)
T ss_pred             cCCCHHHHHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc-------CCcEEEEE
Confidence            4567778888998876  678899999999999999999988  999999999999999987643       25899999


Q ss_pred             cCCCCCCCCCCCee---EEEEccChHHHHHHHHhcc-CCCcE
Q psy7830         192 KDARWGHAEGGPYD---VIFFGAGTTEVSKTILSQL-KPNGR  229 (364)
Q Consensus       192 ~D~~~~~~~~~~fD---~Ii~~~~~~~l~~~l~~~L-kpGG~  229 (364)
                      +|+...+..  .||   +|++|.+++...+.+.+++ .+|+.
T Consensus        82 ~D~~~~~~~--~~d~~~~vvsNlPy~i~~~il~~ll~~~~~~  121 (253)
T TIGR00755        82 GDALKVDLP--DFPKQLKVVSNLPYNISSPLIFKLLEKPKFR  121 (253)
T ss_pred             CchhcCChh--HcCCcceEEEcCChhhHHHHHHHHhccCCCc
Confidence            999876543  466   9999998876555566666 45544

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.02  E-value=1.5e-09  Score=103.66  Aligned_cols=105  Identities=21%  Similarity=0.227  Sum_probs=83.6

Q ss_pred             CCcc-ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEE
Q psy7830         112 QVVM-EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLE  188 (364)
Q Consensus       112 g~~~-s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~  188 (364)
                      |++. ..|.++.++++.+.  +.++.+|||||||+|.++..+++.  +|+++|+|+.+++.+++++....   . .++++
T Consensus        15 GQnFL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~---~-~~~v~   88 (294)
T PTZ00338         15 GQHILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSP---L-ASKLE   88 (294)
T ss_pred             CccccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcC---C-CCcEE
Confidence            4444 68888999999876  678999999999999999999887  89999999999999999987511   1 35899


Q ss_pred             EEEcCCCCCCCCCCCeeEEEEccChHHHHHHHHhcc
Q psy7830         189 FILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQL  224 (364)
Q Consensus       189 ~~~~D~~~~~~~~~~fD~Ii~~~~~~~l~~~l~~~L  224 (364)
                      ++.+|+.....  ..||+|++|.++....+.+.++|
T Consensus        89 ii~~Dal~~~~--~~~d~VvaNlPY~Istpil~~ll  122 (294)
T PTZ00338         89 VIEGDALKTEF--PYFDVCVANVPYQISSPLVFKLL  122 (294)
T ss_pred             EEECCHhhhcc--cccCEEEecCCcccCcHHHHHHH
Confidence            99999976543  46899999998864333344444

>PRK01581 speE spermidine synthase; Validated

Probab=99.01  E-value=2.6e-09  Score=103.62  Aligned_cols=105  Identities=18%  Similarity=0.135  Sum_probs=79.5

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHH--HHhcCCCCCCCCCEEEEEcCCCCCCCC-CCCee
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKN--IKISRPDLLQSKTLEFILKDARWGHAE-GGPYD  205 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~--~~~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD  205 (364)
                      ....+||++|||.|+.+..+++.    +|++||+|+++++.|++.  +....+..+..++++++.+|+...... .+.||
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD  228 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD  228 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence            44569999999999998888876    899999999999999962  211000113457999999999865432 46799


Q ss_pred             EEEEccCh-----------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         206 VIFFGAGT-----------TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       206 ~Ii~~~~~-----------~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +|+++..-           ..+.+.+.+.|+|||++++.....
T Consensus       229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp  271 (374)
T PRK01581        229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP  271 (374)
T ss_pred             EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh
Confidence            99998532           235688999999999999876544

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.00  E-value=3e-09  Score=98.88  Aligned_cols=106  Identities=22%  Similarity=0.266  Sum_probs=84.1

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      ..++..+.. .....+|||||+++|+.+++++..     +|+++|.+++..+.|+++++...   + .++|+++.+|+.+
T Consensus        68 g~lL~~l~~-~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag---~-~~~I~~~~G~a~e  142 (247)
T PLN02589         68 GQFLNMLLK-LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG---V-AHKIDFREGPALP  142 (247)
T ss_pred             HHHHHHHHH-HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC---C-CCceEEEeccHHH
Confidence            455555553 445679999999999999999875     89999999999999999998822   2 3689999999876


Q ss_pred             CCCC-------CCCeeEEEEccChHH---HHHHHHhccCCCcEEEE
Q psy7830         197 GHAE-------GGPYDVIFFGAGTTE---VSKTILSQLKPNGRIVA  232 (364)
Q Consensus       197 ~~~~-------~~~fD~Ii~~~~~~~---l~~~l~~~LkpGG~Lvi  232 (364)
                      ....       .++||+|+.+..-..   .++.+.++|+|||.+++
T Consensus       143 ~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~  188 (247)
T PLN02589        143 VLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGY  188 (247)
T ss_pred             HHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEE
Confidence            4321       258999999887543   45677899999999886

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.00  E-value=3.1e-09  Score=99.79  Aligned_cols=91  Identities=16%  Similarity=0.105  Sum_probs=77.5

Q ss_pred             ccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830         114 VMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL  191 (364)
Q Consensus       114 ~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~  191 (364)
                      ++..+.+...+++.+.  +.++.+|||+|||+|.++..+++.  +|+++|+++.+++.+++++..       .++++++.
T Consensus        11 fl~d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~-------~~~v~ii~   81 (258)
T PRK14896         11 FLIDDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA-------AGNVEIIE   81 (258)
T ss_pred             ccCCHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc-------CCCEEEEE
Confidence            4467788889998876  678999999999999999999988  999999999999999988753       25899999


Q ss_pred             cCCCCCCCCCCCeeEEEEccChHH
Q psy7830         192 KDARWGHAEGGPYDVIFFGAGTTE  215 (364)
Q Consensus       192 ~D~~~~~~~~~~fD~Ii~~~~~~~  215 (364)
                      +|+.....  ..||.|++|.++..
T Consensus        82 ~D~~~~~~--~~~d~Vv~NlPy~i  103 (258)
T PRK14896         82 GDALKVDL--PEFNKVVSNLPYQI  103 (258)
T ss_pred             eccccCCc--hhceEEEEcCCccc
Confidence            99987643  35899999988764

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.99  E-value=5.8e-09  Score=92.61  Aligned_cols=117  Identities=21%  Similarity=0.234  Sum_probs=82.7

Q ss_pred             CccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----e---------EEEEeCCHHHHHHHHHHHHhcCC
Q psy7830         113 VVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----S---------SVRQLLLPETLNNSLKNIKISRP  179 (364)
Q Consensus       113 ~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~---------V~~vDis~~~l~~a~~~~~~~~~  179 (364)
                      ....+|.+.+.++....  .+++..|||..||+|.+.+..+..    .         ++|+|+++.+++.|++|+.... 
T Consensus         9 ~a~L~~~lA~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag-   85 (179)
T PF01170_consen    9 PAPLRPTLAAALLNLAG--WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG-   85 (179)
T ss_dssp             STSS-HHHHHHHHHHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-
T ss_pred             CCCCCHHHHHHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc-
Confidence            34457777777777665  688999999999999999887766    5         7899999999999999998821 


Q ss_pred             CCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChH--------------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         180 DLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTT--------------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       180 ~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~--------------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                        + ...+.+...|+..+....+.+|.|++|.++.              .+.+.+.+.|++ ..+++....
T Consensus        86 --~-~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~  152 (179)
T PF01170_consen   86 --V-EDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSN  152 (179)
T ss_dssp             ----CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESC
T ss_pred             --c-CCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECC
Confidence              1 2368999999998875567899999998872              255788888998 444444444

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.96  E-value=9.8e-09  Score=94.09  Aligned_cols=104  Identities=13%  Similarity=-0.002  Sum_probs=78.3

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHh-------cCCCCCCCCCEEEEEcCCCCCCCC---
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKI-------SRPDLLQSKTLEFILKDARWGHAE---  200 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~-------~~~~~l~~~~v~~~~~D~~~~~~~---  200 (364)
                      .++.+||+.|||.|.-+..|+..  +|+|+|+|+.+++.+.+....       +........++++.++|+.++...   
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~  121 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN  121 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence            46789999999999999999999  999999999999998663210       000001124799999999987532   


Q ss_pred             CCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEcC
Q psy7830         201 GGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      .++||.|+-...+..        ..+.+.++|+|||.+++....
T Consensus       122 ~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~  165 (226)
T PRK13256        122 LPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME  165 (226)
T ss_pred             cCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence            257999976555543        457889999999998876643

>KOG3420|consensus

Probab=98.96  E-value=1.7e-09  Score=90.65  Aligned_cols=100  Identities=18%  Similarity=0.212  Sum_probs=83.1

Q ss_pred             ecCCCccChHHHHHHHHHHHhccCC--CCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCC
Q psy7830         109 FANQVVMEPPSYIARCLEQLVDHLQ--NGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQ  183 (364)
Q Consensus       109 ig~g~~~s~P~~~a~~l~~L~~~l~--~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~  183 (364)
                      ++-.+.+++|++.+.|+..+.+...  .|++++|+|||.|-+++..+..   .|.|+|++|++++.+++|++.     +.
T Consensus        21 ~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeE-----fE   95 (185)
T KOG3420|consen   21 LLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEE-----FE   95 (185)
T ss_pred             hhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHH-----hh
Confidence            3345778899999999998875332  6899999999999999777665   999999999999999999988     22


Q ss_pred             CCCEEEEEcCCCCCCCCCCCeeEEEEccChH
Q psy7830         184 SKTLEFILKDARWGHAEGGPYDVIFFGAGTT  214 (364)
Q Consensus       184 ~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~  214 (364)
                       -++.++++|+.+..+..+.||.++.|.++.
T Consensus        96 -vqidlLqcdildle~~~g~fDtaviNppFG  125 (185)
T KOG3420|consen   96 -VQIDLLQCDILDLELKGGIFDTAVINPPFG  125 (185)
T ss_pred             -hhhheeeeeccchhccCCeEeeEEecCCCC
Confidence             267899999988777678899999998873

>PRK03612 spermidine synthase; Provisional

Probab=98.95  E-value=2.2e-09  Score=110.33  Aligned_cols=105  Identities=18%  Similarity=0.178  Sum_probs=80.7

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHH--HHhcCCCCCCCCCEEEEEcCCCCCCC-CCCCee
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKN--IKISRPDLLQSKTLEFILKDARWGHA-EGGPYD  205 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~--~~~~~~~~l~~~~v~~~~~D~~~~~~-~~~~fD  205 (364)
                      ++..+|||+|||+|..+..+++.    +|+++|+|+++++.++++  +..-....++.++++++.+|+.+... ..++||
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            45689999999999999888876    899999999999999994  22200011334689999999876432 236899


Q ss_pred             EEEEccChH-----------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         206 VIFFGAGTT-----------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       206 ~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +|+++...+           .+.+.+.+.|||||++++.....
T Consensus       376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~  418 (521)
T PRK03612        376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP  418 (521)
T ss_pred             EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCc
Confidence            999986532           25678999999999999876543

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.94  E-value=4.8e-09  Score=94.39  Aligned_cols=99  Identities=18%  Similarity=0.188  Sum_probs=78.2

Q ss_pred             CCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC---CCCCCeeEE
Q psy7830         135 GSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH---AEGGPYDVI  207 (364)
Q Consensus       135 g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~---~~~~~fD~I  207 (364)
                      ...+||||||.|.+...+|..    .++|+|+....+..+.+++..     .+.+|+.++++|+....   ..++++|.|
T Consensus        18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~-----~~l~Nv~~~~~da~~~l~~~~~~~~v~~i   92 (195)
T PF02390_consen   18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEK-----RGLKNVRFLRGDARELLRRLFPPGSVDRI   92 (195)
T ss_dssp             CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHH-----HTTSSEEEEES-CTTHHHHHSTTTSEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHh-----hcccceEEEEccHHHHHhhcccCCchheE
Confidence            338999999999999999987    999999999999999998888     34579999999987632   235789999


Q ss_pred             EEccChHH--------------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830         208 FFGAGTTE--------------VSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       208 i~~~~~~~--------------l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      +.+.+-+|              ++..+.+.|+|||.|.+.+....
T Consensus        93 ~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~  137 (195)
T PF02390_consen   93 YINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEE  137 (195)
T ss_dssp             EEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HH
T ss_pred             EEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHH
Confidence            99988764              67899999999999998886654

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.93  E-value=8.2e-09  Score=99.04  Aligned_cols=114  Identities=20%  Similarity=0.202  Sum_probs=92.8

Q ss_pred             ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc-
Q psy7830         116 EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK-  192 (364)
Q Consensus       116 s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~-  192 (364)
                      ..|.+ ++++-.|. .+++|..|||--||||.+.+.+...  +++|+|++..|++-|+.|++.     .+.....+... 
T Consensus       181 ~~P~l-AR~mVNLa-~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~-----y~i~~~~~~~~~  253 (347)
T COG1041         181 MDPRL-ARAMVNLA-RVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEY-----YGIEDYPVLKVL  253 (347)
T ss_pred             cCHHH-HHHHHHHh-ccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhh-----hCcCceeEEEec
Confidence            34665 45554454 3899999999999999999998877  999999999999999999988     33456766666 


Q ss_pred             CCCCCCCCCCCeeEEEEccChH---------------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         193 DARWGHAEGGPYDVIFFGAGTT---------------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       193 D~~~~~~~~~~fD~Ii~~~~~~---------------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      |+...+..+.++|.|+++.+.-               ..++.+.+.||+||++++..+.
T Consensus       254 Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~  312 (347)
T COG1041         254 DATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR  312 (347)
T ss_pred             ccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC
Confidence            9998887666799999887652               3568899999999999998873

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.92  E-value=3.8e-09  Score=103.88  Aligned_cols=118  Identities=11%  Similarity=0.057  Sum_probs=87.8

Q ss_pred             ChHHHHHHHHHHHhccCC-CCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830         116 EPPSYIARCLEQLVDHLQ-NGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK  192 (364)
Q Consensus       116 s~P~~~a~~l~~L~~~l~-~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~  192 (364)
                      ..+.....+++++.+.+. .+.+|||++||+|.+++.+++.  +|+++|+++.+++.+++|+..+.     ..|++++.+
T Consensus       187 ~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~-----~~~v~~~~~  261 (362)
T PRK05031        187 PNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANG-----IDNVQIIRM  261 (362)
T ss_pred             cCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhC-----CCcEEEEEC
Confidence            344455666666654443 2357999999999999999887  99999999999999999998843     458999999


Q ss_pred             CCCCCCCC----------------CCCeeEEEEccChHHHHHHH-HhccCCCcEEEEEEcCCC
Q psy7830         193 DARWGHAE----------------GGPYDVIFFGAGTTEVSKTI-LSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       193 D~~~~~~~----------------~~~fD~Ii~~~~~~~l~~~l-~~~LkpGG~Lvi~~~~~~  238 (364)
                      |+......                ..+||+|+++.+-..+.+.+ ..+.++++++++++.+..
T Consensus       262 d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~~~~ivyvSC~p~t  324 (362)
T PRK05031        262 SAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQAYERILYISCNPET  324 (362)
T ss_pred             CHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHccCCEEEEEeCHHH
Confidence            98653210                12589999998865544333 233357999999998855

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.92  E-value=1e-08  Score=91.80  Aligned_cols=100  Identities=13%  Similarity=0.066  Sum_probs=76.5

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC---CC-CCee
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA---EG-GPYD  205 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~---~~-~~fD  205 (364)
                      -.|.+|||++||+|.+++.++.+   +|+++|.++.+++.+++|++.+.   + ..+++++.+|+.....   .. ..||
T Consensus        48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~---~-~~~~~~~~~D~~~~l~~~~~~~~~~d  123 (189)
T TIGR00095        48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLK---S-GEQAEVVRNSALRALKFLAKKPTFDN  123 (189)
T ss_pred             cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhC---C-cccEEEEehhHHHHHHHhhccCCCce
Confidence            36889999999999999999887   89999999999999999998833   2 1378999999854321   11 2489


Q ss_pred             EEEEccChH-----HHHHHHH--hccCCCcEEEEEEcC
Q psy7830         206 VIFFGAGTT-----EVSKTIL--SQLKPNGRIVAPVGN  236 (364)
Q Consensus       206 ~Ii~~~~~~-----~l~~~l~--~~LkpGG~Lvi~~~~  236 (364)
                      +|+.+.++.     .+++.+.  ..|+++|.+|+....
T Consensus       124 vv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       124 VIYLDPPFFNGALQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             EEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            999988773     2344333  368899998886644

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.91  E-value=4.3e-09  Score=103.17  Aligned_cols=118  Identities=12%  Similarity=0.038  Sum_probs=86.2

Q ss_pred             ChHHHHHHHHHHHhccCC-CCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830         116 EPPSYIARCLEQLVDHLQ-NGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK  192 (364)
Q Consensus       116 s~P~~~a~~l~~L~~~l~-~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~  192 (364)
                      ..+.....+++.+.+.+. .+.+|||+|||+|.+++.+++.  +|+++|+++.+++.|++|+..+.     ..|++++.+
T Consensus       178 ~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~-----~~~v~~~~~  252 (353)
T TIGR02143       178 PNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANN-----IDNVQIIRM  252 (353)
T ss_pred             CCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEEc
Confidence            334445555655544333 2357999999999999999987  99999999999999999998843     458999999


Q ss_pred             CCCCCCCC----------C------CCeeEEEEccChHHHHHHH-HhccCCCcEEEEEEcCCC
Q psy7830         193 DARWGHAE----------G------GPYDVIFFGAGTTEVSKTI-LSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       193 D~~~~~~~----------~------~~fD~Ii~~~~~~~l~~~l-~~~LkpGG~Lvi~~~~~~  238 (364)
                      |+.+....          .      ..||+|+.+.+-..+.+.+ ..+.+|++++++++.+..
T Consensus       253 d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~~~~ivYvsC~p~t  315 (353)
T TIGR02143       253 SAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQAYERILYISCNPET  315 (353)
T ss_pred             CHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHcCCcEEEEEcCHHH
Confidence            98653321          0      1389999998854433322 333458999999998865

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.91  E-value=5e-10  Score=100.68  Aligned_cols=110  Identities=16%  Similarity=0.154  Sum_probs=81.6

Q ss_pred             ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830         116 EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD  193 (364)
Q Consensus       116 s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D  193 (364)
                      +-|.+++.++..+.  ..+-.++||+|||||..+..+..+  +++|+|+|+.|++.|.++---        +  ...++|
T Consensus       109 ~vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~Y--------D--~L~~Ae  176 (287)
T COG4976         109 SVPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLY--------D--TLYVAE  176 (287)
T ss_pred             ccHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccch--------H--HHHHHH
Confidence            44667788877765  345679999999999999998888  999999999999998874210        1  122333


Q ss_pred             CCCCC--CCCCCeeEEEEccChH------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         194 ARWGH--AEGGPYDVIFFGAGTT------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       194 ~~~~~--~~~~~fD~Ii~~~~~~------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +..+.  ..+.+||+|.+..++.      .++......|+|||.+.||+.+-
T Consensus       177 a~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l  228 (287)
T COG4976         177 AVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETL  228 (287)
T ss_pred             HHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEeccc
Confidence            32222  2346899998766554      46778899999999999999664

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.89  E-value=9e-09  Score=101.27  Aligned_cols=107  Identities=21%  Similarity=0.246  Sum_probs=89.0

Q ss_pred             HhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC----C
Q psy7830         128 LVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA----E  200 (364)
Q Consensus       128 L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~----~  200 (364)
                      +.+..+ |++|||+.|=||.++.+++..   +|++||+|..+++.|++|++-|.   +....+.++++|+.....    .
T Consensus       212 l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg---~~~~~~~~i~~Dvf~~l~~~~~~  287 (393)
T COG1092         212 LGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNG---LDGDRHRFIVGDVFKWLRKAERR  287 (393)
T ss_pred             Hhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcC---CCccceeeehhhHHHHHHHHHhc
Confidence            333345 999999999999999999887   99999999999999999999866   656679999999986542    2


Q ss_pred             CCCeeEEEEccCh---------------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         201 GGPYDVIFFGAGT---------------TEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       201 ~~~fD~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      ..+||+|+.+.+.               ..+...+.++|+|||.++++.....
T Consensus       288 g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~  340 (393)
T COG1092         288 GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH  340 (393)
T ss_pred             CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence            3589999998764               1266789999999999999987765

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.85  E-value=2e-08  Score=91.93  Aligned_cols=115  Identities=23%  Similarity=0.294  Sum_probs=80.9

Q ss_pred             hHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHh--cCCC-----CCCCCCE
Q psy7830         117 PPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKI--SRPD-----LLQSKTL  187 (364)
Q Consensus       117 ~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~--~~~~-----~l~~~~v  187 (364)
                      +|.+... ++.+.  .+++.+||..|||.|+-...|+..  +|+|+|+|+.+++.+.+....  ....     .....+|
T Consensus        23 ~p~L~~~-~~~l~--~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i   99 (218)
T PF05724_consen   23 NPALVEY-LDSLA--LKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRI   99 (218)
T ss_dssp             THHHHHH-HHHHT--TSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSE
T ss_pred             CHHHHHH-HHhcC--CCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCce
Confidence            4445433 33344  577889999999999999999999  999999999999998543221  1100     0123478


Q ss_pred             EEEEcCCCCCCCCC-CCeeEEEEccChH--------HHHHHHHhccCCCcEEEEEE
Q psy7830         188 EFILKDARWGHAEG-GPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       188 ~~~~~D~~~~~~~~-~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      +++++|...+.... ++||+|+=...+.        ...+.+.++|+|||.+++.+
T Consensus       100 ~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~  155 (218)
T PF05724_consen  100 TIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLIT  155 (218)
T ss_dssp             EEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEE
T ss_pred             EEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            99999998876543 5899998655443        35678999999999944433

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG2899|consensus

Probab=98.85  E-value=1.1e-08  Score=92.94  Aligned_cols=101  Identities=18%  Similarity=0.196  Sum_probs=71.2

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCC--CCCC----------------------
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRP--DLLQ----------------------  183 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~--~~l~----------------------  183 (364)
                      .-.+..+|||||-+|.+++.+++.    .|.|+|||+..++.|+++++.-..  ..+.                      
T Consensus        56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~  135 (288)
T KOG2899|consen   56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR  135 (288)
T ss_pred             ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence            346778999999999999999988    999999999999999998864110  0000                      


Q ss_pred             -------------CCCEEEEEcCCCCCCCCCCCeeEEEEccCh------------HHHHHHHHhccCCCcEEEEEE
Q psy7830         184 -------------SKTLEFILKDARWGHAEGGPYDVIFFGAGT------------TEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       184 -------------~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~------------~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                                   ..|..+...|..  ......||+|+|-...            ..++..+.++|.|||+||+.-
T Consensus       136 a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP  209 (288)
T KOG2899|consen  136 AFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP  209 (288)
T ss_pred             cccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence                         012222222332  2234679999874433            236789999999999999743

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.84  E-value=2e-08  Score=95.92  Aligned_cols=215  Identities=15%  Similarity=0.133  Sum_probs=133.6

Q ss_pred             ccccCCCceecCCCccChHHHHHHHHHHHh----ccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHH
Q psy7830         100 FGFCDIPYAFANQVVMEPPSYIARCLEQLV----DHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSL  171 (364)
Q Consensus       100 ~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~----~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~  171 (364)
                      ..|.|+++.|.+--       -.+.-|.|.    +.++.-.+||-+|.|.|.....+.+.    +|+-+|+||.|++.++
T Consensus       258 rLYldG~LQfsTrD-------e~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~  330 (508)
T COG4262         258 RLYLDGGLQFSTRD-------EYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELAS  330 (508)
T ss_pred             EEEEcCceeeeech-------hhhhhheeeecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhh
Confidence            66888888876421       011111111    11345578999999999999999988    9999999999999999


Q ss_pred             HH--HHhcCCCCCCCCCEEEEEcCCCCCCCC-CCCeeEEEEccChH-----------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         172 KN--IKISRPDLLQSKTLEFILKDARWGHAE-GGPYDVIFFGAGTT-----------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       172 ~~--~~~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ++  +..-++++...++++++..|+..+... .+.||.||++..-+           .+-..+.+.|+++|.+|+..++.
T Consensus       331 ~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~  410 (508)
T COG4262         331 HATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSP  410 (508)
T ss_pred             hhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence            54  333223446678999999999876543 35899999875543           23467889999999999999887


Q ss_pred             C--cceEEEEEecCCCceeEEEeeceeEEeccCcccccCCCCCCCccCCCccccceecCCCCCCCCCccccCCCCcccCC
Q psy7830         238 W--RQNLSVIDKGPDGSISSKILRRVSSDFLCNLEYQLHPDVFPQPLNTSAEDTYTKMFPPPPGVRPRAVTFPLSSQERS  315 (364)
Q Consensus       238 ~--~~~l~~~~~~~~g~~~~~~l~~~~f~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  315 (364)
                      .  ...+|++.++-... ..+..--.-++|-.+        .|+.++..+..-    .+-++.+.++....++.....+.
T Consensus       411 y~tp~vfw~i~aTik~A-G~~~~Pyhv~VPTFG--------eWGf~l~~~~~~----~fep~~e~~~~t~FLd~e~~~a~  477 (508)
T COG4262         411 YFTPRVFWRIDATIKSA-GYRVWPYHVHVPTFG--------EWGFILAAPGDA----DFEPPTEYRPPTRFLDAEVLHAA  477 (508)
T ss_pred             ccCCceeeeehhHHHhC-cceeeeeEEecCccc--------ccceeecccccC----CCCCCcccCcccchhhHHHHHHH
Confidence            6  45566666542210 011111111222221        467776655532    22224555666666654333334


Q ss_pred             CCCCCccccCCCChhhhhc
Q psy7830         316 PGNGSTKKYEFLPESTEDR  334 (364)
Q Consensus       316 ~~~~~~~~~~~l~~~~~~~  334 (364)
                      -.++.+..-+.+++++.++
T Consensus       478 ~~fg~d~prp~vepntL~~  496 (508)
T COG4262         478 FVFGPDMPRPQVEPNTLDN  496 (508)
T ss_pred             HhcCCCCCCCCCCccccCC
Confidence            4444443333677777765

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.82  E-value=1.7e-08  Score=101.07  Aligned_cols=117  Identities=22%  Similarity=0.261  Sum_probs=91.0

Q ss_pred             ChHHHHHHHHHHHhccC--CCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830         116 EPPSYIARCLEQLVDHL--QNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL  191 (364)
Q Consensus       116 s~P~~~a~~l~~L~~~l--~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~  191 (364)
                      ..+.....++++..+.+  .++++|||+-||.|.+++.+|+.  +|+|+|+++.+++.|++|++.|.     ..|++|..
T Consensus       273 ~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~-----i~N~~f~~  347 (432)
T COG2265         273 VNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANG-----IDNVEFIA  347 (432)
T ss_pred             cCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcC-----CCcEEEEe
Confidence            44445555555444433  47789999999999999999977  99999999999999999999944     56899999


Q ss_pred             cCCCCCCCC---CCCeeEEEEccChHH----HHHHHHhccCCCcEEEEEEcCCC
Q psy7830         192 KDARWGHAE---GGPYDVIFFGAGTTE----VSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       192 ~D~~~~~~~---~~~fD~Ii~~~~~~~----l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      +|+++....   ...+|.|+++.+-..    +++.+ ..++|..++++|+.+..
T Consensus       348 ~~ae~~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l-~~~~p~~IvYVSCNP~T  400 (432)
T COG2265         348 GDAEEFTPAWWEGYKPDVVVVDPPRAGADREVLKQL-AKLKPKRIVYVSCNPAT  400 (432)
T ss_pred             CCHHHHhhhccccCCCCEEEECCCCCCCCHHHHHHH-HhcCCCcEEEEeCCHHH
Confidence            998876543   247899999977544    33333 45688999999998865

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.81  E-value=2.4e-08  Score=96.82  Aligned_cols=105  Identities=21%  Similarity=0.182  Sum_probs=74.7

Q ss_pred             CCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHh-cCC-CCCC---CCCEEEEEcCCCCC------CC
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKI-SRP-DLLQ---SKTLEFILKDARWG------HA  199 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~-~~~-~~l~---~~~v~~~~~D~~~~------~~  199 (364)
                      ++.+|||+|||-|+-...+...   .++|+|++...++.|+++... ... +...   .-...++.+|....      ..
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~  141 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP  141 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence            7899999999999877766666   999999999999999999843 110 0000   12467788887632      12


Q ss_pred             CCCCeeEEEEccChHH----------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830         200 EGGPYDVIFFGAGTTE----------VSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       200 ~~~~fD~Ii~~~~~~~----------l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      ...+||+|-+..++|.          ++.++.+.|+|||+++.++.+..
T Consensus       142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~  190 (331)
T PF03291_consen  142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD  190 (331)
T ss_dssp             TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred             cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence            2258999988887764          67899999999999999998865

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.80  E-value=1.4e-08  Score=90.35  Aligned_cols=121  Identities=20%  Similarity=0.174  Sum_probs=85.4

Q ss_pred             CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCC-CE
Q psy7830         112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSK-TL  187 (364)
Q Consensus       112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~-~v  187 (364)
                      +..++.-.+-..+..+|....-.|.+|||+.||||.+++.++.+   +|+.||.++.++...++|++.     ++.. ++
T Consensus        20 ~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~-----l~~~~~~   94 (183)
T PF03602_consen   20 NTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEK-----LGLEDKI   94 (183)
T ss_dssp             TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHH-----HT-GGGE
T ss_pred             CcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHH-----hCCCcce
Confidence            34454445556667777632147999999999999999988777   999999999999999999998     3333 58


Q ss_pred             EEEEcCCCCCCC----CCCCeeEEEEccChH------HHHHHHH--hccCCCcEEEEEEcCC
Q psy7830         188 EFILKDARWGHA----EGGPYDVIFFGAGTT------EVSKTIL--SQLKPNGRIVAPVGNV  237 (364)
Q Consensus       188 ~~~~~D~~~~~~----~~~~fD~Ii~~~~~~------~l~~~l~--~~LkpGG~Lvi~~~~~  237 (364)
                      +++..|......    ...+||+|+++.++.      .++..+.  .+|+++|.+++.....
T Consensus        95 ~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen   95 RVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             EEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             eeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            999999654321    246899999998874      2445555  6889999999988554

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.79  E-value=3.7e-08  Score=84.71  Aligned_cols=122  Identities=17%  Similarity=0.180  Sum_probs=94.7

Q ss_pred             ccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHh
Q psy7830         102 FCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKI  176 (364)
Q Consensus       102 y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~  176 (364)
                      +.+.+..+|. ..+|++.+..+|+..+.  ...|.-|||+|.|+|.+|.++..+     .++++|.|++.+....+..  
T Consensus        19 wi~~PrtVGa-I~PsSs~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~--   93 (194)
T COG3963          19 WIDNPRTVGA-ILPSSSILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY--   93 (194)
T ss_pred             HhcCCceeee-ecCCcHHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC--
Confidence            3455556662 45677778888888887  678889999999999999988877     8999999999999888764  


Q ss_pred             cCCCCCCCCCEEEEEcCCCCCC-----CCCCCeeEEEEccChH--------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         177 SRPDLLQSKTLEFILKDARWGH-----AEGGPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       177 ~~~~~l~~~~v~~~~~D~~~~~-----~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                              +.+.++.+|+.++.     ..+..||.|++..++-        .+++.+...|.+||.++.-.-.
T Consensus        94 --------p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg  158 (194)
T COG3963          94 --------PGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG  158 (194)
T ss_pred             --------CCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence                    45668888887543     2235699999876652        3678999999999988865433

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.79  E-value=3.7e-08  Score=97.41  Aligned_cols=112  Identities=15%  Similarity=0.100  Sum_probs=84.9

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR  195 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~  195 (364)
                      +...+++.+.. ..++.+|||++||+|..++.++..    +|+++|+++.+++.+++|++.|.     ..++++..+|+.
T Consensus        44 l~~~v~~~~~~-~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~-----~~~~~v~~~Da~  117 (382)
T PRK04338         44 ISVLVLRAFGP-KLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG-----LENEKVFNKDAN  117 (382)
T ss_pred             HHHHHHHHHHh-hcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCceEEEhhhHH
Confidence            44555555541 113578999999999999998764    79999999999999999998854     357789999986


Q ss_pred             CCCCCCCCeeEEEEccCh--HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         196 WGHAEGGPYDVIFFGAGT--TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       196 ~~~~~~~~fD~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ........||+|+++..-  ..++....+.+++||.++++..+.
T Consensus       118 ~~l~~~~~fD~V~lDP~Gs~~~~l~~al~~~~~~gilyvSAtD~  161 (382)
T PRK04338        118 ALLHEERKFDVVDIDPFGSPAPFLDSAIRSVKRGGLLCVTATDT  161 (382)
T ss_pred             HHHhhcCCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEEecCc
Confidence            644323579999998642  245566677889999999996553

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.79  E-value=3.4e-08  Score=90.67  Aligned_cols=98  Identities=24%  Similarity=0.205  Sum_probs=84.3

Q ss_pred             CEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC---CCCCCCeeEEE
Q psy7830         136 SRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG---HAEGGPYDVIF  208 (364)
Q Consensus       136 ~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~---~~~~~~fD~Ii  208 (364)
                      -.+||||||.|.+...+|+.    .++|||+....+..+.+.+.+     .+.+|+.+++.|+...   ..++++.|.|+
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~-----~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~  124 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKE-----LGLKNLRLLCGDAVEVLDYLIPDGSLDKIY  124 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHH-----cCCCcEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence            47999999999999999998    899999999999999999888     4456999999998753   33456999999


Q ss_pred             EccChHH--------------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830         209 FGAGTTE--------------VSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       209 ~~~~~~~--------------l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      .+.+-+|              +++.+.+.|+|||.|.+.+....
T Consensus       125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~  168 (227)
T COG0220         125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEE  168 (227)
T ss_pred             EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHH
Confidence            9988754              67899999999999999887754

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.78  E-value=2.5e-08  Score=89.87  Aligned_cols=97  Identities=25%  Similarity=0.293  Sum_probs=72.8

Q ss_pred             ccCCCCCEEEEECCCccHHHHHHHc--c--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCee
Q psy7830         130 DHLQNGSRVLDIGSGQGYMATAKEW--L--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYD  205 (364)
Q Consensus       130 ~~l~~g~~VLDiGcGsG~~a~~la~--~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD  205 (364)
                      +.+++|..|+|+.||-|++++.+++  .  .|+++|++|.+++..++|++.|.   +. .++..+.+|+..... ...||
T Consensus        97 ~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk---v~-~~i~~~~~D~~~~~~-~~~~d  171 (200)
T PF02475_consen   97 NLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK---VE-NRIEVINGDAREFLP-EGKFD  171 (200)
T ss_dssp             TC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT----T-TTEEEEES-GGG----TT-EE
T ss_pred             hcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC---CC-CeEEEEcCCHHHhcC-ccccC
Confidence            3468999999999999999999998  3  89999999999999999999865   43 479999999988766 57899


Q ss_pred             EEEEccCh--HHHHHHHHhccCCCcEEE
Q psy7830         206 VIFFGAGT--TEVSKTILSQLKPNGRIV  231 (364)
Q Consensus       206 ~Ii~~~~~--~~l~~~l~~~LkpGG~Lv  231 (364)
                      .|+++.+.  ..++..+.+++++||.+-
T Consensus       172 rvim~lp~~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  172 RVIMNLPESSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             EEEE--TSSGGGGHHHHHHHEEEEEEEE
T ss_pred             EEEECChHHHHHHHHHHHHHhcCCcEEE
Confidence            99998774  357788999999999874

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>KOG1122|consensus

Probab=98.77  E-value=2.7e-08  Score=96.73  Aligned_cols=100  Identities=19%  Similarity=0.163  Sum_probs=84.7

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC--CCCe
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE--GGPY  204 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~--~~~f  204 (364)
                      +++|.||||+++.+|..|.++|.+     .|++.|.+...+...+.|+.+     +|..|..+...|...++..  .++|
T Consensus       239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~r-----lGv~ntiv~n~D~~ef~~~~~~~~f  313 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHR-----LGVTNTIVSNYDGREFPEKEFPGSF  313 (460)
T ss_pred             CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHH-----hCCCceEEEccCcccccccccCccc
Confidence            689999999999999999998887     899999999999999999999     6667888888898765421  2379


Q ss_pred             eEEEEccChHH----------------------------HHHHHHhccCCCcEEEEEEcC
Q psy7830         205 DVIFFGAGTTE----------------------------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       205 D~Ii~~~~~~~----------------------------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      |.|+.+++|..                            ++.....++++||+||.++-+
T Consensus       314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS  373 (460)
T KOG1122|consen  314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS  373 (460)
T ss_pred             ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence            99999888743                            445777899999999998855

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.77  E-value=2.9e-08  Score=94.09  Aligned_cols=103  Identities=21%  Similarity=0.229  Sum_probs=79.0

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC---CCCCeeE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA---EGGPYDV  206 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~---~~~~fD~  206 (364)
                      ..|.+|||+.|=||.++.+++..   +|++||.|..+++.+++|+..|.   +...+++++..|+.....   ..++||+
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg---~~~~~~~~~~~Dvf~~l~~~~~~~~fD~  198 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNG---LDLDRHRFIQGDVFKFLKRLKKGGRFDL  198 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT----CCTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred             cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCccceEEEecCHHHHHHHHhcCCCCCE
Confidence            45899999999999999987766   89999999999999999999866   555689999999876432   2468999


Q ss_pred             EEEccCh------------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         207 IFFGAGT------------TEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       207 Ii~~~~~------------~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      |+++.+.            ..+...+.++|+|||.|++......
T Consensus       199 IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~  242 (286)
T PF10672_consen  199 IILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH  242 (286)
T ss_dssp             EEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence            9998764            2477888999999999998887654

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>KOG1975|consensus

Probab=98.76  E-value=3.9e-08  Score=92.68  Aligned_cols=106  Identities=18%  Similarity=0.187  Sum_probs=82.1

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHh--cCCCCCCCCCEEEEEcCCCCC------CCC
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKI--SRPDLLQSKTLEFILKDARWG------HAE  200 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~--~~~~~l~~~~v~~~~~D~~~~------~~~  200 (364)
                      .++++.++|+|||-|+-.+.+-+.   .++|+||.+..++.|+++.+.  +..... .-.+.|+.+|....      .+.
T Consensus       115 ~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~-~f~a~f~~~Dc~~~~l~d~~e~~  193 (389)
T KOG1975|consen  115 TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKF-IFTAVFIAADCFKERLMDLLEFK  193 (389)
T ss_pred             hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcc-cceeEEEEeccchhHHHHhccCC
Confidence            478999999999999988877766   999999999999999998876  210000 11478999998632      223


Q ss_pred             CCCeeEEEEccChHH----------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830         201 GGPYDVIFFGAGTTE----------VSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~~----------l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      +.+||+|-+...+|.          ++.++.+.|||||+++-++++..
T Consensus       194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd  241 (389)
T KOG1975|consen  194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD  241 (389)
T ss_pred             CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence            344999977666643          67899999999999999998875

>PLN02823 spermine synthase

Probab=98.73  E-value=9.3e-08  Score=92.83  Aligned_cols=102  Identities=25%  Similarity=0.330  Sum_probs=79.7

Q ss_pred             CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC-CCCeeEEE
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE-GGPYDVIF  208 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD~Ii  208 (364)
                      ...+||.+|+|.|..+..+++.    +|+.||+|+.+++.+++.+..+. ..+..++++++.+|+...... .++||+|+
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~-~~~~dprv~v~~~Da~~~L~~~~~~yDvIi  181 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNR-EAFCDKRLELIINDARAELEKRDEKFDVII  181 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccc-ccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence            4579999999999999888775    89999999999999999876421 013357999999999875432 36899999


Q ss_pred             EccCh------------HHHHH-HHHhccCCCcEEEEEEcC
Q psy7830         209 FGAGT------------TEVSK-TILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       209 ~~~~~------------~~l~~-~l~~~LkpGG~Lvi~~~~  236 (364)
                      ++..-            ..+.+ .+.+.|+|||++++....
T Consensus       182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s  222 (336)
T PLN02823        182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGP  222 (336)
T ss_pred             ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccC
Confidence            87421            13455 788999999999987654

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.70  E-value=1.3e-07  Score=88.04  Aligned_cols=102  Identities=15%  Similarity=0.032  Sum_probs=81.2

Q ss_pred             cChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830         115 MEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK  192 (364)
Q Consensus       115 ~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~  192 (364)
                      +..+.+..++++.+.  +.+++.|||||+|.|.+|..+++.  +|+++|+|+.++...++....       .+|++++.+
T Consensus        13 L~d~~v~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~-------~~n~~vi~~   83 (259)
T COG0030          13 LIDKNVIDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAP-------YDNLTVING   83 (259)
T ss_pred             ccCHHHHHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhccc-------ccceEEEeC
Confidence            345667788888877  677999999999999999999998  999999999999999988753       358999999


Q ss_pred             CCCCCCCCCC-CeeEEEEccChHHHHHHHHhccC
Q psy7830         193 DARWGHAEGG-PYDVIFFGAGTTEVSKTILSQLK  225 (364)
Q Consensus       193 D~~~~~~~~~-~fD~Ii~~~~~~~l~~~l~~~Lk  225 (364)
                      |+.......- .++.|++|.++.--.+-+.++|+
T Consensus        84 DaLk~d~~~l~~~~~vVaNlPY~Isspii~kll~  117 (259)
T COG0030          84 DALKFDFPSLAQPYKVVANLPYNISSPILFKLLE  117 (259)
T ss_pred             chhcCcchhhcCCCEEEEcCCCcccHHHHHHHHh
Confidence            9987765421 68999999998643333333333

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.69  E-value=8.5e-08  Score=92.38  Aligned_cols=77  Identities=21%  Similarity=0.230  Sum_probs=58.2

Q ss_pred             CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhc-CCCCCCCCCEEEEE-cCCCCCC----CCCCC
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKIS-RPDLLQSKTLEFIL-KDARWGH----AEGGP  203 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~-~~~~l~~~~v~~~~-~D~~~~~----~~~~~  203 (364)
                      .+.++||||||+|.+...++..    +++|+|+|+.+++.|++|++.| .   +. .+|++.. .|.....    ...+.
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~---l~-~~I~~~~~~~~~~i~~~i~~~~~~  189 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPG---LN-GAIRLRLQKDSKAIFKGIIHKNER  189 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccC---Cc-CcEEEEEccchhhhhhcccccCCc
Confidence            4679999999999887776654    9999999999999999999985 3   22 3677754 3322211    12468


Q ss_pred             eeEEEEccChH
Q psy7830         204 YDVIFFGAGTT  214 (364)
Q Consensus       204 fD~Ii~~~~~~  214 (364)
                      ||+|+||.++.
T Consensus       190 fDlivcNPPf~  200 (321)
T PRK11727        190 FDATLCNPPFH  200 (321)
T ss_pred             eEEEEeCCCCc
Confidence            99999999885

>KOG3010|consensus

Probab=98.68  E-value=3.3e-08  Score=89.83  Aligned_cols=98  Identities=14%  Similarity=0.100  Sum_probs=68.7

Q ss_pred             CCCC-EEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830         133 QNGS-RVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF  209 (364)
Q Consensus       133 ~~g~-~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~  209 (364)
                      .++. .++|+|||+|..++.++..  +|+|+|+++.|++.|++......   .. ........++..+...+++.|+|++
T Consensus        31 ~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y---~~-t~~~ms~~~~v~L~g~e~SVDlI~~  106 (261)
T KOG3010|consen   31 TEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTY---CH-TPSTMSSDEMVDLLGGEESVDLITA  106 (261)
T ss_pred             CCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCccc---cc-CCccccccccccccCCCcceeeehh
Confidence            3444 7899999999777888887  99999999999999887543211   00 1222333333344333578999999


Q ss_pred             ccChHH-----HHHHHHhccCCCcEEEEEE
Q psy7830         210 GAGTTE-----VSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       210 ~~~~~~-----l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ...+|+     +.+.+.++||+.|-++...
T Consensus       107 Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW  136 (261)
T KOG3010|consen  107 AQAVHWFDLERFYKEAYRVLRKDGGLIAVW  136 (261)
T ss_pred             hhhHHhhchHHHHHHHHHHcCCCCCEEEEE
Confidence            988886     4678999999877444434

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.68  E-value=2.1e-08  Score=90.62  Aligned_cols=104  Identities=26%  Similarity=0.267  Sum_probs=83.9

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--CCCCCeeE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH--AEGGPYDV  206 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~--~~~~~fD~  206 (364)
                      ++.|.+|||.|.|-||.++..+++   +|+.+|.||..++.|.-|--...   +...+++++.+|+.+..  +.+++||+
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~---l~~~~i~iilGD~~e~V~~~~D~sfDa  208 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRE---LFEIAIKIILGDAYEVVKDFDDESFDA  208 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCcc---ccccccEEecccHHHHHhcCCccccce
Confidence            456999999999999999999888   99999999999999987643311   22347899999987653  34678999


Q ss_pred             EEEccCh---------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         207 IFFGAGT---------TEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       207 Ii~~~~~---------~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      |+-+.+-         ..+-+++++.|||||+|+--+++++
T Consensus       209 IiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg  249 (287)
T COG2521         209 IIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG  249 (287)
T ss_pred             EeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence            9866542         2356899999999999999998876

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.66  E-value=1e-07  Score=91.67  Aligned_cols=121  Identities=21%  Similarity=0.201  Sum_probs=82.1

Q ss_pred             CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHc---------c--eEEEEeCCHHHHHHHHHHHHhcCCC
Q psy7830         112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEW---------L--SSVRQLLLPETLNNSLKNIKISRPD  180 (364)
Q Consensus       112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~---------~--~V~~vDis~~~l~~a~~~~~~~~~~  180 (364)
                      |+..+...++..|.+++.  ..++.+|+|.+||+|.+...+.+         .  .++|+|+++.++..|+-|+.-..  
T Consensus        26 G~~~TP~~i~~l~~~~~~--~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~--  101 (311)
T PF02384_consen   26 GQFYTPREIVDLMVKLLN--PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG--  101 (311)
T ss_dssp             GGC---HHHHHHHHHHHT--T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT--
T ss_pred             ceeehHHHHHHHHHhhhh--ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc--
Confidence            445555567777777775  67888999999999999877765         2  89999999999999998875421  


Q ss_pred             CCCCCCEEEEEcCCCCCCCC--CCCeeEEEEccChHH---------------------------HHHHHHhccCCCcEEE
Q psy7830         181 LLQSKTLEFILKDARWGHAE--GGPYDVIFFGAGTTE---------------------------VSKTILSQLKPNGRIV  231 (364)
Q Consensus       181 ~l~~~~v~~~~~D~~~~~~~--~~~fD~Ii~~~~~~~---------------------------l~~~l~~~LkpGG~Lv  231 (364)
                       .+..+..+..+|.......  ...||+|++|.++..                           .+..+.+.|++||+++
T Consensus       102 -~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~  180 (311)
T PF02384_consen  102 -IDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAA  180 (311)
T ss_dssp             -HHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEE
T ss_pred             -cccccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccccccee
Confidence             2223456888887654332  368999999876521                           4467889999999988


Q ss_pred             EEEcCC
Q psy7830         232 APVGNV  237 (364)
Q Consensus       232 i~~~~~  237 (364)
                      +.++..
T Consensus       181 ~Ilp~~  186 (311)
T PF02384_consen  181 IILPNG  186 (311)
T ss_dssp             EEEEHH
T ss_pred             EEecch
Confidence            877653

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG1499|consensus

Probab=98.66  E-value=8.9e-08  Score=91.59  Aligned_cols=97  Identities=18%  Similarity=0.055  Sum_probs=73.1

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      +-.+..|||+|||+|.++...|+.   +|+++|.|.-+ +.|++.+..|.   +. ..|+++.+.+++...+.++.|+|+
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~---~~-~ii~vi~gkvEdi~LP~eKVDiIv  132 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNG---LE-DVITVIKGKVEDIELPVEKVDIIV  132 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcC---cc-ceEEEeecceEEEecCccceeEEe
Confidence            356889999999999999999888   99999998655 89998888754   32 358999998877644357899998


Q ss_pred             EccChHH-----HHH----HHHhccCCCcEEEEE
Q psy7830         209 FGAGTTE-----VSK----TILSQLKPNGRIVAP  233 (364)
Q Consensus       209 ~~~~~~~-----l~~----~l~~~LkpGG~Lvi~  233 (364)
                      +--.-..     ++.    .=-+.|+|||.++=.
T Consensus       133 SEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~  166 (346)
T KOG1499|consen  133 SEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPD  166 (346)
T ss_pred             ehhhhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence            7433222     222    223689999988743

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.66  E-value=5.2e-07  Score=79.84  Aligned_cols=131  Identities=17%  Similarity=0.130  Sum_probs=93.1

Q ss_pred             ccCCCceecC--CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHh
Q psy7830         102 FCDIPYAFAN--QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKI  176 (364)
Q Consensus       102 y~d~~l~ig~--g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~  176 (364)
                      |....+.+..  +..++.-.+-..+..+|.+.--.|.++||+-+|||.+++.++.+   +++.||.|..++...++|++.
T Consensus         9 ~kgr~L~~p~~~~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~   88 (187)
T COG0742           9 YKGRKLKTPDGPGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKA   88 (187)
T ss_pred             ccCCcccCCCCCCcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHH
Confidence            4444555544  34453333444455555421145889999999999999998887   999999999999999999988


Q ss_pred             cCCCCCC-CCCEEEEEcCCCCCCC---CCCCeeEEEEccChHH-HH----HH----HHhccCCCcEEEEEEcCC
Q psy7830         177 SRPDLLQ-SKTLEFILKDARWGHA---EGGPYDVIFFGAGTTE-VS----KT----ILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       177 ~~~~~l~-~~~v~~~~~D~~~~~~---~~~~fD~Ii~~~~~~~-l~----~~----l~~~LkpGG~Lvi~~~~~  237 (364)
                           ++ ..+.+++..|+.....   ..++||+|+.+.++.. +.    ..    -...|+|+|.+++.....
T Consensus        89 -----l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742          89 -----LGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             -----hCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence                 33 3478889999874321   1235999999999873 21    11    236799999999987654

>KOG0820|consensus

Probab=98.64  E-value=1.6e-07  Score=86.67  Aligned_cols=98  Identities=16%  Similarity=0.120  Sum_probs=80.9

Q ss_pred             cCCCcc-ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC
Q psy7830         110 ANQVVM-EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKT  186 (364)
Q Consensus       110 g~g~~~-s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~  186 (364)
                      +.|+|+ -.|.+...+++...  +++++.|||+|.|||.+|..+.+.  +|+++|+||.|+....++.+.-.    ....
T Consensus        35 d~GQHilkNp~v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp----~~~k  108 (315)
T KOG0820|consen   35 DFGQHILKNPLVIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTP----KSGK  108 (315)
T ss_pred             ccchhhhcCHHHHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCC----ccce
Confidence            446776 56788888888777  899999999999999999999988  99999999999999999886511    1247


Q ss_pred             EEEEEcCCCCCCCCCCCeeEEEEccChHH
Q psy7830         187 LEFILKDARWGHAEGGPYDVIFFGAGTTE  215 (364)
Q Consensus       187 v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~  215 (364)
                      ++++.+|......  ..||.+++|.+++-
T Consensus       109 LqV~~gD~lK~d~--P~fd~cVsNlPyqI  135 (315)
T KOG0820|consen  109 LQVLHGDFLKTDL--PRFDGCVSNLPYQI  135 (315)
T ss_pred             eeEEecccccCCC--cccceeeccCCccc
Confidence            9999999876542  46999999988753

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.62  E-value=2.1e-07  Score=93.72  Aligned_cols=92  Identities=20%  Similarity=0.199  Sum_probs=67.7

Q ss_pred             CCEEEEECCCccHHHHHHHcc--------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeE
Q psy7830         135 GSRVLDIGSGQGYMATAKEWL--------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDV  206 (364)
Q Consensus       135 g~~VLDiGcGsG~~a~~la~~--------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~  206 (364)
                      +..|+|+|||+|.++...++.        +|++||.++.++...++.+..+.   . .++|+++.+|+++...+ .++|+
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~---w-~~~V~vi~~d~r~v~lp-ekvDI  261 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG---W-GDKVTVIHGDMREVELP-EKVDI  261 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT---T-TTTEEEEES-TTTSCHS-S-EEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC---C-CCeEEEEeCcccCCCCC-CceeE
Confidence            467999999999998555432        99999999999988877755532   2 25899999999987653 58999


Q ss_pred             EEEc--------cChHHHHHHHHhccCCCcEEE
Q psy7830         207 IFFG--------AGTTEVSKTILSQLKPNGRIV  231 (364)
Q Consensus       207 Ii~~--------~~~~~l~~~l~~~LkpGG~Lv  231 (364)
                      |++-        -....++....+.|||||+++
T Consensus       262 IVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  262 IVSELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             EEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             EEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            9873        233456777788999999876

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.62  E-value=3.2e-07  Score=80.98  Aligned_cols=102  Identities=25%  Similarity=0.287  Sum_probs=67.3

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC----CCCCC
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH----AEGGP  203 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~----~~~~~  203 (364)
                      ...+.+|||+|||+|..++.++..    +|+..|.++ .++..+.|++.|..  ....++.+...|-.+..    ....+
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~--~~~~~v~v~~L~Wg~~~~~~~~~~~~  119 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS--LLDGRVSVRPLDWGDELDSDLLEPHS  119 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT----------EEEE--TTS-HHHHHHS-SS
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc--cccccccCcEEEecCccccccccccc
Confidence            567899999999999999888877    999999999 99999999987421  11346777777653311    12357


Q ss_pred             eeEEEEccCh------HHHHHHHHhccCCCcEEEEEEcC
Q psy7830         204 YDVIFFGAGT------TEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       204 fD~Ii~~~~~------~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ||+|++.-.+      ..+...+.++|+++|.+++....
T Consensus       120 ~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~  158 (173)
T PF10294_consen  120 FDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKR  158 (173)
T ss_dssp             BSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred             CCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence            9999875443      45788899999999987776644

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK04148 hypothetical protein; Provisional

Probab=98.60  E-value=5.1e-07  Score=75.88  Aligned_cols=92  Identities=13%  Similarity=0.089  Sum_probs=71.0

Q ss_pred             CCCCEEEEECCCccH-HHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC-CCCeeEEE
Q psy7830         133 QNGSRVLDIGSGQGY-MATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE-GGPYDVIF  208 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~-~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD~Ii  208 (364)
                      ..+.+|||||||+|. .+..|++.  .|+++|+++.+++.++++            .++++.+|..+...+ ...+|+|+
T Consensus        15 ~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~------------~~~~v~dDlf~p~~~~y~~a~liy   82 (134)
T PRK04148         15 GKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL------------GLNAFVDDLFNPNLEIYKNAKLIY   82 (134)
T ss_pred             ccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh------------CCeEEECcCCCCCHHHHhcCCEEE
Confidence            356899999999996 88888887  999999999998888764            367899998865443 36799999


Q ss_pred             EccChHHHHHHHHhccCC-CcEEEEEEcC
Q psy7830         209 FGAGTTEVSKTILSQLKP-NGRIVAPVGN  236 (364)
Q Consensus       209 ~~~~~~~l~~~l~~~Lkp-GG~Lvi~~~~  236 (364)
                      +.-+-.++.+.+.++-+. |.-+++.-..
T Consensus        83 sirpp~el~~~~~~la~~~~~~~~i~~l~  111 (134)
T PRK04148         83 SIRPPRDLQPFILELAKKINVPLIIKPLS  111 (134)
T ss_pred             EeCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            999888877766666544 5555554433

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.60  E-value=3.4e-07  Score=84.65  Aligned_cols=90  Identities=23%  Similarity=0.215  Sum_probs=69.2

Q ss_pred             CCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEcc
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGA  211 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~  211 (364)
                      ...++||||+|.|..+..++..  +|++.|.|+.|....++            .+++++..|-  ....+.+||+|.|-.
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~------------kg~~vl~~~~--w~~~~~~fDvIscLN  159 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK------------KGFTVLDIDD--WQQTDFKFDVISCLN  159 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh------------CCCeEEehhh--hhccCCceEEEeehh
Confidence            3568999999999999999998  99999999999655443            1344443332  222346899999887


Q ss_pred             ChH------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         212 GTT------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       212 ~~~------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      .+.      .+++.+++.|+|+|++++.+--+
T Consensus       160 vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP  191 (265)
T PF05219_consen  160 VLDRCDRPLTLLRDIRRALKPNGRLILAVVLP  191 (265)
T ss_pred             hhhccCCHHHHHHHHHHHhCCCCEEEEEEEec
Confidence            775      37899999999999999887544

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.59  E-value=2.7e-07  Score=89.12  Aligned_cols=102  Identities=25%  Similarity=0.228  Sum_probs=87.6

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      ..+|.+|+|+-||-|++++.+|+.   +|+++|++|.+++..++|+..|.   +. ..+..+++|+....+..+.+|.|+
T Consensus       186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~---v~-~~v~~i~gD~rev~~~~~~aDrIi  261 (341)
T COG2520         186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNK---VE-GRVEPILGDAREVAPELGVADRII  261 (341)
T ss_pred             hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcC---cc-ceeeEEeccHHHhhhccccCCEEE
Confidence            467999999999999999999988   69999999999999999999865   32 248999999988776557899999


Q ss_pred             EccCh--HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         209 FGAGT--TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       209 ~~~~~--~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ++.+.  +..+....+.+++||.+-+.....
T Consensus       262 m~~p~~a~~fl~~A~~~~k~~g~iHyy~~~~  292 (341)
T COG2520         262 MGLPKSAHEFLPLALELLKDGGIIHYYEFVP  292 (341)
T ss_pred             eCCCCcchhhHHHHHHHhhcCcEEEEEeccc
Confidence            99875  568888999999999998866554

>PRK00536 speE spermidine synthase; Provisional

Probab=98.58  E-value=4.5e-07  Score=84.94  Aligned_cols=102  Identities=11%  Similarity=-0.024  Sum_probs=80.2

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEc
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFG  210 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~  210 (364)
                      +...+||-+|.|.|..+..+++.  +|+.||+|+++++.+++.+.... .++..++++++.. ..+  ...++||+|+++
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~-~~~~DpRv~l~~~-~~~--~~~~~fDVIIvD  146 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFH-EVKNNKNFTHAKQ-LLD--LDIKKYDLIICL  146 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHH-HhhcCCCEEEeeh-hhh--ccCCcCCEEEEc
Confidence            45689999999999999999998  99999999999999999665511 1255678888762 211  113689999999


Q ss_pred             cCh-HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         211 AGT-TEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       211 ~~~-~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      ... ....+.+.+.|+|||+++...++..
T Consensus       147 s~~~~~fy~~~~~~L~~~Gi~v~Qs~sp~  175 (262)
T PRK00536        147 QEPDIHKIDGLKRMLKEDGVFISVAKHPL  175 (262)
T ss_pred             CCCChHHHHHHHHhcCCCcEEEECCCCcc
Confidence            554 4677899999999999999877654

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.58  E-value=1.6e-07  Score=92.10  Aligned_cols=118  Identities=16%  Similarity=0.204  Sum_probs=74.7

Q ss_pred             ChHHHHHHHHHHHhccCCC-CCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830         116 EPPSYIARCLEQLVDHLQN-GSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK  192 (364)
Q Consensus       116 s~P~~~a~~l~~L~~~l~~-g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~  192 (364)
                      ..+.....+++++.+.+.. +.+|||+.||.|.+++.+|..  +|+|+|+++.+++.|++|+..|.     ..|++|+.+
T Consensus       177 vN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~-----i~n~~f~~~  251 (352)
T PF05958_consen  177 VNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNG-----IDNVEFIRG  251 (352)
T ss_dssp             SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT-------SEEEEE-
T ss_pred             CcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcC-----CCcceEEEe
Confidence            4455555555555444332 238999999999999999998  99999999999999999999854     479999988


Q ss_pred             CCCCCCC----------------CCCCeeEEEEccChHHHHHHHHhcc-CCCcEEEEEEcCCC
Q psy7830         193 DARWGHA----------------EGGPYDVIFFGAGTTEVSKTILSQL-KPNGRIVAPVGNVW  238 (364)
Q Consensus       193 D~~~~~~----------------~~~~fD~Ii~~~~~~~l~~~l~~~L-kpGG~Lvi~~~~~~  238 (364)
                      ++.+...                ....+|+|+.+.+-..+.+.+.+.+ ++.=++++|+.+..
T Consensus       252 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~~~~ivYvSCnP~t  314 (352)
T PF05958_consen  252 DAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIKKLKRIVYVSCNPAT  314 (352)
T ss_dssp             -SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHHHSSEEEEEES-HHH
T ss_pred             eccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHhcCCeEEEEECCHHH
Confidence            7643211                1126899999877654322222211 34567888887755

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.57  E-value=4.3e-07  Score=84.14  Aligned_cols=88  Identities=23%  Similarity=0.285  Sum_probs=71.4

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      ..+..+|+|||+|+|.++..+++.    +++.+|. |.+++.+++   .        ++|+++.+|+.+..+  . +|++
T Consensus        98 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~--------~rv~~~~gd~f~~~P--~-~D~~  162 (241)
T PF00891_consen   98 FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---A--------DRVEFVPGDFFDPLP--V-ADVY  162 (241)
T ss_dssp             TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---T--------TTEEEEES-TTTCCS--S-ESEE
T ss_pred             ccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---c--------cccccccccHHhhhc--c-ccce
Confidence            456679999999999999999887    9999999 888888887   2        589999999984332  3 9999


Q ss_pred             EEccChHH--------HHHHHHhccCCC--cEEEEEE
Q psy7830         208 FFGAGTTE--------VSKTILSQLKPN--GRIVAPV  234 (364)
Q Consensus       208 i~~~~~~~--------l~~~l~~~LkpG--G~Lvi~~  234 (364)
                      +....++.        +++++++.|+||  |+|++..
T Consensus       163 ~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e  199 (241)
T PF00891_consen  163 LLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE  199 (241)
T ss_dssp             EEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred             eeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence            98888763        789999999999  9999865

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.55  E-value=3.5e-07  Score=79.60  Aligned_cols=77  Identities=21%  Similarity=0.171  Sum_probs=61.2

Q ss_pred             EEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEE
Q psy7830         158 VRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIV  231 (364)
Q Consensus       158 ~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lv  231 (364)
                      +|+|+|+.|++.|+++......  ....+++++++|+.+.+..+++||+|++...+++      .++++.++|||||.++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~--~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~   78 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKAR--SCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVS   78 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccc--cCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEE
Confidence            4899999999999887653100  1124799999999988777779999999877764      5789999999999999


Q ss_pred             EEEcC
Q psy7830         232 APVGN  236 (364)
Q Consensus       232 i~~~~  236 (364)
                      +....
T Consensus        79 i~d~~   83 (160)
T PLN02232         79 ILDFN   83 (160)
T ss_pred             EEECC
Confidence            86544

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.55  E-value=4.3e-07  Score=86.02  Aligned_cols=101  Identities=22%  Similarity=0.204  Sum_probs=82.3

Q ss_pred             CEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCC-CCeeEEEEc
Q psy7830         136 SRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEG-GPYDVIFFG  210 (364)
Q Consensus       136 ~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~-~~fD~Ii~~  210 (364)
                      .+||-||-|.|..+..+.+.    +++.||+++++++.+++.+...... ...++++++..|+....... .+||+|+++
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~-~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D  156 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGG-ADDPRVEIIIDDGVEFLRDCEEKFDVIIVD  156 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccc-cCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence            59999999999999999988    9999999999999999988761100 12579999999998765433 379999987


Q ss_pred             cCh----------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         211 AGT----------TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       211 ~~~----------~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ..-          ....+.+.+.|+++|+++...++.
T Consensus       157 ~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~  193 (282)
T COG0421         157 STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSP  193 (282)
T ss_pred             CCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence            543          246789999999999999986654

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.54  E-value=2.4e-07  Score=85.23  Aligned_cols=96  Identities=14%  Similarity=0.142  Sum_probs=63.0

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHH-HHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNN-SLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~-a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      ..+.+|||+|||+|+++..+++.   +|+|+|+++.++.. .+++..--.   ++..|++..  +..+.+.+...||+++
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~---~~~~ni~~~--~~~~~~~d~~~~Dvsf  148 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKV---LERTNIRYV--TPADIFPDFATFDVSF  148 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeE---eecCCcccC--CHhHcCCCceeeeEEE
Confidence            46789999999999999999887   89999999977765 332211000   112233311  1111222224688777


Q ss_pred             EccChHHHHHHHHhccCCCcEEEEEEcC
Q psy7830         209 FGAGTTEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       209 ~~~~~~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +.  +..+++.+.+.|++ |.+++-+-+
T Consensus       149 iS--~~~~l~~i~~~l~~-~~~~~L~KP  173 (228)
T TIGR00478       149 IS--LISILPELDLLLNP-NDLTLLFKP  173 (228)
T ss_pred             ee--hHhHHHHHHHHhCc-CeEEEEcCh
Confidence            54  44588999999999 888876644

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.53  E-value=4.6e-07  Score=81.35  Aligned_cols=104  Identities=20%  Similarity=0.091  Sum_probs=73.1

Q ss_pred             HHHHHhccCCCCC-EEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEE-EEEcCCCCC
Q psy7830         124 CLEQLVDHLQNGS-RVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLE-FILKDARWG  197 (364)
Q Consensus       124 ~l~~L~~~l~~g~-~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~-~~~~D~~~~  197 (364)
                      +++.|.+++.+.. +|||||||||..+.++++.    .-.-.|.++......+..+..     .+.+|+. -+..|+...
T Consensus        14 Il~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~-----~~~~Nv~~P~~lDv~~~   88 (204)
T PF06080_consen   14 ILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAE-----AGLPNVRPPLALDVSAP   88 (204)
T ss_pred             HHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHh-----cCCcccCCCeEeecCCC
Confidence            4444544455555 5999999999999999987    677789999988777776655     1123321 233454433


Q ss_pred             -CC-------CCCCeeEEEEccChH--------HHHHHHHhccCCCcEEEE
Q psy7830         198 -HA-------EGGPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       198 -~~-------~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi  232 (364)
                       +.       ...+||.|++...+|        .++....+.|++||.|++
T Consensus        89 ~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~  139 (204)
T PF06080_consen   89 PWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFL  139 (204)
T ss_pred             CCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEE
Confidence             11       235899999877765        377889999999999886

The function of this family is unknown.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.52  E-value=9.2e-07  Score=91.25  Aligned_cols=98  Identities=12%  Similarity=0.095  Sum_probs=69.7

Q ss_pred             CCCccChHHHHHHHHHHHhccCC-----CCCEEEEECCCccHHHHHHHcc------------eEEEEeCCHHHHHHHHHH
Q psy7830         111 NQVVMEPPSYIARCLEQLVDHLQ-----NGSRVLDIGSGQGYMATAKEWL------------SSVRQLLLPETLNNSLKN  173 (364)
Q Consensus       111 ~g~~~s~P~~~a~~l~~L~~~l~-----~g~~VLDiGcGsG~~a~~la~~------------~V~~vDis~~~l~~a~~~  173 (364)
                      .|++-+.+.++..|++.+.+...     .+.+|||.|||+|.+...++..            .++|+|+++.++..++.+
T Consensus         3 ~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~   82 (524)
T TIGR02987         3 YGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL   82 (524)
T ss_pred             CcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence            36777888899999988753222     3468999999999999877643            689999999999999999


Q ss_pred             HHhcCCCCCCCCCEEEEEcCCCCC----C-CCCCCeeEEEEccCh
Q psy7830         174 IKISRPDLLQSKTLEFILKDARWG----H-AEGGPYDVIFFGAGT  213 (364)
Q Consensus       174 ~~~~~~~~l~~~~v~~~~~D~~~~----~-~~~~~fD~Ii~~~~~  213 (364)
                      +..     .+...+.+...|....    . ...+.||+|+.|.++
T Consensus        83 l~~-----~~~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy  122 (524)
T TIGR02987        83 LGE-----FALLEINVINFNSLSYVLLNIESYLDLFDIVITNPPY  122 (524)
T ss_pred             Hhh-----cCCCCceeeecccccccccccccccCcccEEEeCCCc
Confidence            876     2111344454543321    1 112579999998765

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.51  E-value=5.9e-07  Score=83.75  Aligned_cols=104  Identities=29%  Similarity=0.303  Sum_probs=81.0

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHh-cCCCCCCCCCEEEEEcCCCCCCCC-CC-Cee
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKI-SRPDLLQSKTLEFILKDARWGHAE-GG-PYD  205 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~-~~~~~l~~~~v~~~~~D~~~~~~~-~~-~fD  205 (364)
                      ....+||-||-|.|..+..+.+.    +|+.||+|+.+++.+++.+.. ...  ...++++++.+|+...... .+ +||
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r~~i~~~Dg~~~l~~~~~~~yD  152 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG--LDDPRVRIIIGDGRKFLKETQEEKYD  152 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc--cCCCceEEEEhhhHHHHHhccCCccc
Confidence            46789999999999999999887    899999999999999998765 210  2347999999998765432 24 799


Q ss_pred             EEEEccCh----------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         206 VIFFGAGT----------TEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       206 ~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      +|+++..-          ....+.+.+.|+|||++++......
T Consensus       153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~  195 (246)
T PF01564_consen  153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPF  195 (246)
T ss_dssp             EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred             EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcc
Confidence            99986543          3467899999999999999875543

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>KOG3191|consensus

Probab=98.50  E-value=1.6e-06  Score=75.68  Aligned_cols=97  Identities=20%  Similarity=0.257  Sum_probs=78.1

Q ss_pred             CCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830         135 GSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF  209 (364)
Q Consensus       135 g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~  209 (364)
                      ...++|||||||..+..+++.     .+.++|++|.+++..++.+..|.      -++..++.|....... ++.|+++.
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~------~~~~~V~tdl~~~l~~-~~VDvLvf  116 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR------VHIDVVRTDLLSGLRN-ESVDVLVF  116 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC------CccceeehhHHhhhcc-CCccEEEE
Confidence            567999999999999999887     68899999999999998887643      3688899998776654 78999998


Q ss_pred             ccChH---------------------------HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         210 GAGTT---------------------------EVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       210 ~~~~~---------------------------~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      |.++.                           .+++.+-..|.|.|.+++......
T Consensus       117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N  172 (209)
T KOG3191|consen  117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN  172 (209)
T ss_pred             CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence            87651                           144566678899999988775544

>KOG1500|consensus

Probab=98.48  E-value=5.9e-07  Score=85.12  Aligned_cols=98  Identities=20%  Similarity=0.213  Sum_probs=76.9

Q ss_pred             CCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEc
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFG  210 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~  210 (364)
                      .+..|||+|||+|+++..++..   +|+++|.| +|.+.|++-++.|+   + .++|.++.+.+++... .++.|+|++.
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~---~-~~rItVI~GKiEdieL-PEk~DviISE  250 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNN---L-ADRITVIPGKIEDIEL-PEKVDVIISE  250 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCC---c-cceEEEccCccccccC-chhccEEEec
Confidence            5778999999999999888877   99999987 78899998887754   3 3689999999887654 3689999985


Q ss_pred             cCh-----HHHHH---HHHhccCCCcEEEEEEcCC
Q psy7830         211 AGT-----TEVSK---TILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       211 ~~~-----~~l~~---~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ..-     +.+++   ..++.|||.|.++-++++-
T Consensus       251 PMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~gdi  285 (517)
T KOG1500|consen  251 PMGYMLVNERMLESYLHARKWLKPNGKMFPTVGDI  285 (517)
T ss_pred             cchhhhhhHHHHHHHHHHHhhcCCCCcccCcccce
Confidence            432     22332   4558999999998777664

>KOG2915|consensus

Probab=98.48  E-value=1.3e-06  Score=80.83  Aligned_cols=109  Identities=17%  Similarity=0.153  Sum_probs=88.9

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA  194 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~  194 (364)
                      -.+.++..|.  +.||.+|||-|+|+|.++.++++.     +++..|..+...+.|++.++...   ++ +|+++..-|+
T Consensus        93 Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg---i~-~~vt~~hrDV  166 (314)
T KOG2915|consen   93 DIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG---IG-DNVTVTHRDV  166 (314)
T ss_pred             cHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC---CC-cceEEEEeec
Confidence            3478888887  899999999999999999999887     99999999999999999998832   33 5899999998


Q ss_pred             CCCCCC--CCCeeEEEEccChHHH-HHHHHhccCCCcEEEEEE
Q psy7830         195 RWGHAE--GGPYDVIFFGAGTTEV-SKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       195 ~~~~~~--~~~fD~Ii~~~~~~~l-~~~l~~~LkpGG~Lvi~~  234 (364)
                      ...-+.  ...+|.|+.+.+.+|. .+.+.+.||.+|.-+++.
T Consensus       167 c~~GF~~ks~~aDaVFLDlPaPw~AiPha~~~lk~~g~r~csF  209 (314)
T KOG2915|consen  167 CGSGFLIKSLKADAVFLDLPAPWEAIPHAAKILKDEGGRLCSF  209 (314)
T ss_pred             ccCCccccccccceEEEcCCChhhhhhhhHHHhhhcCceEEec
Confidence            754332  4679999999999874 567777999877444443

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.47  E-value=2.1e-06  Score=83.63  Aligned_cols=122  Identities=16%  Similarity=0.087  Sum_probs=93.2

Q ss_pred             ecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-e-------------------------------
Q psy7830         109 FANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-S-------------------------------  156 (364)
Q Consensus       109 ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-~-------------------------------  156 (364)
                      ...|..+-.+.+.+.++....  -+++..++|.=||||++.+.+|.. .                               
T Consensus       168 ~~~g~ApLketLAaAil~lag--w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~  245 (381)
T COG0116         168 VYDGPAPLKETLAAAILLLAG--WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAE  245 (381)
T ss_pred             ccCCCCCchHHHHHHHHHHcC--CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHH
Confidence            334455556666666666554  467789999999999999887765 2                               


Q ss_pred             -----------EEEEeCCHHHHHHHHHHHHh-cCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChHH---------
Q psy7830         157 -----------SVRQLLLPETLNNSLKNIKI-SRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTE---------  215 (364)
Q Consensus       157 -----------V~~vDis~~~l~~a~~~~~~-~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~---------  215 (364)
                                 ++|+|+|+.+++.|+.|+.. +.     .+.|+|.++|+..+....+.+|+|++|.++-.         
T Consensus       246 ~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv-----~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~  320 (381)
T COG0116         246 ERARRGKELPIIYGSDIDPRHIEGAKANARAAGV-----GDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVA  320 (381)
T ss_pred             HHHhhcCccceEEEecCCHHHHHHHHHHHHhcCC-----CceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHH
Confidence                       77999999999999999988 43     25799999999887654368999999988732         


Q ss_pred             -----HHHHHHhccCCCcEEEEEEcCC
Q psy7830         216 -----VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       216 -----l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                           +.+.+.+.++--++.+++....
T Consensus       321 ~LY~~fg~~lk~~~~~ws~~v~tt~e~  347 (381)
T COG0116         321 KLYREFGRTLKRLLAGWSRYVFTTSED  347 (381)
T ss_pred             HHHHHHHHHHHHHhcCCceEEEEccHH
Confidence                 3456777888888888876554

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.47  E-value=9.1e-07  Score=87.19  Aligned_cols=126  Identities=13%  Similarity=0.109  Sum_probs=92.1

Q ss_pred             cccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHH
Q psy7830         101 GFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIK  175 (364)
Q Consensus       101 ~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~  175 (364)
                      +|.++...+...-++    ++......... -..+.+|||+.||+|..++.++..     +|+++|+++.+++.+++|++
T Consensus        16 vFYNP~~~~nRDlsv----~~~~~~~~~~~-~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~   90 (374)
T TIGR00308        16 VFYNPRMQFNRDLSV----TCIQAFDNLYG-KECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVE   90 (374)
T ss_pred             cccCchhhccccHHH----HHHHHHHHhhC-CcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHH
Confidence            677777777665433    22222221110 011358999999999999998864     79999999999999999998


Q ss_pred             hcCCCCCCCCCEEEEEcCCCCCCCC-CCCeeEEEEccChH--HHHHHHHhccCCCcEEEEEEcC
Q psy7830         176 ISRPDLLQSKTLEFILKDARWGHAE-GGPYDVIFFGAGTT--EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       176 ~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD~Ii~~~~~~--~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      .|.     ..++++.+.|+...... ...||+|+.+..-.  .++..+.+.+++||.|.++..+
T Consensus        91 ~N~-----~~~~~v~~~Da~~~l~~~~~~fDvIdlDPfGs~~~fld~al~~~~~~glL~vTaTD  149 (374)
T TIGR00308        91 YNS-----VENIEVPNEDAANVLRYRNRKFHVIDIDPFGTPAPFVDSAIQASAERGLLLVTATD  149 (374)
T ss_pred             HhC-----CCcEEEEchhHHHHHHHhCCCCCEEEeCCCCCcHHHHHHHHHhcccCCEEEEEecc
Confidence            843     34789999998765432 25799999987332  5778888999999999998544

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>KOG2361|consensus

Probab=98.46  E-value=1.9e-07  Score=84.92  Aligned_cols=96  Identities=19%  Similarity=0.181  Sum_probs=72.6

Q ss_pred             EEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC----CCCCCCCeeE
Q psy7830         137 RVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW----GHAEGGPYDV  206 (364)
Q Consensus       137 ~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~----~~~~~~~fD~  206 (364)
                      +|||+|||.|.....+.+.      +|+++|.||.+++..+++...+      ..++...+.|+..    .+...+++|.
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~------e~~~~afv~Dlt~~~~~~~~~~~svD~  147 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD------ESRVEAFVWDLTSPSLKEPPEEGSVDI  147 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc------hhhhcccceeccchhccCCCCcCccce
Confidence            7999999999999888776      8999999999999999876542      1355556666543    2233578998


Q ss_pred             EEEccChH--------HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         207 IFFGAGTT--------EVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       207 Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      |.+...+.        ..++++.++|||||.|++..-..+
T Consensus       148 it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~  187 (264)
T KOG2361|consen  148 ITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRY  187 (264)
T ss_pred             EEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccc
Confidence            86554442        367899999999999998765443

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.45  E-value=9.6e-07  Score=78.65  Aligned_cols=96  Identities=23%  Similarity=0.216  Sum_probs=78.1

Q ss_pred             EEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccC
Q psy7830         137 RVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAG  212 (364)
Q Consensus       137 ~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~  212 (364)
                      +++|+|+|.|.-++.++-.    +++.+|.....+...+.-...     ++.+|++++.+.+++ ......||+|++-+.
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~-----L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv  124 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRE-----LGLSNVEVINGRAEE-PEYRESFDVVTARAV  124 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHH-----HT-SSEEEEES-HHH-TTTTT-EEEEEEESS
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHH-----hCCCCEEEEEeeecc-cccCCCccEEEeehh
Confidence            8999999999888777765    899999999999999988877     566899999999987 233578999998665


Q ss_pred             h--HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         213 T--TEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       213 ~--~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      .  ..+.+.+...+++||++++.-+...
T Consensus       125 ~~l~~l~~~~~~~l~~~G~~l~~KG~~~  152 (184)
T PF02527_consen  125 APLDKLLELARPLLKPGGRLLAYKGPDA  152 (184)
T ss_dssp             SSHHHHHHHHGGGEEEEEEEEEEESS--
T ss_pred             cCHHHHHHHHHHhcCCCCEEEEEcCCCh
Confidence            4  5788899999999999999888754

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.43  E-value=3.4e-07  Score=79.68  Aligned_cols=72  Identities=21%  Similarity=0.179  Sum_probs=54.4

Q ss_pred             EEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCC-CCCEEEEEcCCCCCCCCC--C-CeeEEEEc
Q psy7830         137 RVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQ-SKTLEFILKDARWGHAEG--G-PYDVIFFG  210 (364)
Q Consensus       137 ~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~-~~~v~~~~~D~~~~~~~~--~-~fD~Ii~~  210 (364)
                      .|+|+.||.|+.++.+|+.  +|+++|+++..++.|+.|++-     .| .++|+++++|..+.....  . .||+|+++
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~v-----YGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEV-----YGVADNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHH-----TT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHH-----cCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence            6999999999999999998  999999999999999999988     33 358999999987654321  1 28999987


Q ss_pred             cCh
Q psy7830         211 AGT  213 (364)
Q Consensus       211 ~~~  213 (364)
                      .+.
T Consensus        77 PPW   79 (163)
T PF09445_consen   77 PPW   79 (163)
T ss_dssp             --B
T ss_pred             CCC
Confidence            553

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.38  E-value=6e-07  Score=85.55  Aligned_cols=87  Identities=15%  Similarity=0.120  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830         118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK  192 (364)
Q Consensus       118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~  192 (364)
                      |-+...+++.|.  +.++..++|.+||.|+.+..+++.     +|+|+|.|+.+++.+++++..       ..+++++.+
T Consensus         5 pVll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-------~~ri~~i~~   75 (296)
T PRK00050          5 PVLLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-------FGRFTLVHG   75 (296)
T ss_pred             cccHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-------CCcEEEEeC
Confidence            558889999987  688999999999999999999876     799999999999999988744       248999999


Q ss_pred             CCCCCCC---C-CCCeeEEEEccCh
Q psy7830         193 DARWGHA---E-GGPYDVIFFGAGT  213 (364)
Q Consensus       193 D~~~~~~---~-~~~fD~Ii~~~~~  213 (364)
                      |..+...   . ..++|.|+++..+
T Consensus        76 ~f~~l~~~l~~~~~~vDgIl~DLGv  100 (296)
T PRK00050         76 NFSNLKEVLAEGLGKVDGILLDLGV  100 (296)
T ss_pred             CHHHHHHHHHcCCCccCEEEECCCc
Confidence            9875421   1 1279999987655

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.36  E-value=1.8e-06  Score=88.52  Aligned_cols=100  Identities=16%  Similarity=0.073  Sum_probs=81.4

Q ss_pred             CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC--CCCCCCeeEE
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG--HAEGGPYDVI  207 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~--~~~~~~fD~I  207 (364)
                      .+..+||||||.|.+...+|..    .++|+|++...+..+.+.+..     .+..|+.++..|+...  ...++++|.|
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~-----~~l~N~~~~~~~~~~~~~~~~~~sv~~i  421 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGE-----QNITNFLLFPNNLDLILNDLPNNSLDGI  421 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH-----cCCCeEEEEcCCHHHHHHhcCcccccEE
Confidence            3567999999999999999988    899999999998888887766     2347999988886422  1335789999


Q ss_pred             EEccChHH--------------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830         208 FFGAGTTE--------------VSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       208 i~~~~~~~--------------l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      +.+.+-+|              ++..+.+.|||||.+.+.+....
T Consensus       422 ~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~  466 (506)
T PRK01544        422 YILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIEN  466 (506)
T ss_pred             EEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHH
Confidence            99988754              67899999999999998876643

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.35  E-value=5.1e-06  Score=88.55  Aligned_cols=122  Identities=16%  Similarity=0.076  Sum_probs=88.9

Q ss_pred             CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc------------------------------------
Q psy7830         112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL------------------------------------  155 (364)
Q Consensus       112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~------------------------------------  155 (364)
                      +..+..+.+.+.++.... ..+++..++|.+||+|.+.+.++..                                    
T Consensus       169 ~~Apl~etlAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~  247 (702)
T PRK11783        169 GEAPLKENLAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQER  247 (702)
T ss_pred             CCCCCcHHHHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHH
Confidence            345567778777776543 2357889999999999999776531                                    


Q ss_pred             ----------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC--CCCeeEEEEccChHH--------
Q psy7830         156 ----------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE--GGPYDVIFFGAGTTE--------  215 (364)
Q Consensus       156 ----------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~--~~~fD~Ii~~~~~~~--------  215 (364)
                                +++|+|+++.+++.|++|+....   +. +.+++..+|+.+....  .++||+|++|.++..        
T Consensus       248 ~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g---~~-~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l  323 (702)
T PRK11783        248 ARAGLAELPSKFYGSDIDPRVIQAARKNARRAG---VA-ELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPAL  323 (702)
T ss_pred             HhhcccccCceEEEEECCHHHHHHHHHHHHHcC---CC-cceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHH
Confidence                      48999999999999999998832   21 3689999999876433  246999999988621        


Q ss_pred             --HHHH---HHhccCCCcEEEEEEcCCC
Q psy7830         216 --VSKT---ILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       216 --l~~~---l~~~LkpGG~Lvi~~~~~~  238 (364)
                        +-..   ..+...+|+.+++-.++..
T Consensus       324 ~~lY~~lg~~lk~~~~g~~~~llt~~~~  351 (702)
T PRK11783        324 IALYSQLGRRLKQQFGGWNAALFSSSPE  351 (702)
T ss_pred             HHHHHHHHHHHHHhCCCCeEEEEeCCHH
Confidence              2222   2333448999988887665

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.35  E-value=1.9e-06  Score=77.93  Aligned_cols=98  Identities=22%  Similarity=0.187  Sum_probs=69.8

Q ss_pred             CCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEcc
Q psy7830         135 GSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGA  211 (364)
Q Consensus       135 g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~  211 (364)
                      ..+.||.|+|-|..|..+...   +|..+|..+..++.|++.+..+.     ....++++.-..++.++.++||+|++.=
T Consensus        56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-----~~v~~~~~~gLQ~f~P~~~~YDlIW~QW  130 (218)
T PF05891_consen   56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-----PRVGEFYCVGLQDFTPEEGKYDLIWIQW  130 (218)
T ss_dssp             -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-----CCEEEEEES-GGG----TT-EEEEEEES
T ss_pred             cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-----CCcceEEecCHhhccCCCCcEeEEEehH
Confidence            468999999999999866544   99999999999999998765511     1235677777776666667999999865


Q ss_pred             ChHH--------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         212 GTTE--------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       212 ~~~~--------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      .+.|        ++..+...|+|||.|++-.+..
T Consensus       131 ~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~  164 (218)
T PF05891_consen  131 CLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVS  164 (218)
T ss_dssp             -GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             hhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCC
Confidence            5543        5789999999999999977554

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>KOG1663|consensus

Probab=98.33  E-value=6.1e-06  Score=74.82  Aligned_cols=105  Identities=27%  Similarity=0.359  Sum_probs=81.2

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHh-cCCCCCCCCCEEEEEcCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKI-SRPDLLQSKTLEFILKDAR  195 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~-~~~~~l~~~~v~~~~~D~~  195 (364)
                      ..+++.+.+ +....++||+|.=+||.+..+|..     +|+++|++++..+.+.+-.+. +.     ...|+++.+++.
T Consensus        62 g~fl~~li~-~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv-----~~KI~~i~g~a~  135 (237)
T KOG1663|consen   62 GQFLQMLIR-LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV-----DHKITFIEGPAL  135 (237)
T ss_pred             HHHHHHHHH-HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc-----cceeeeeecchh
Confidence            333444432 446789999999999999998877     999999999999999776665 22     358999999876


Q ss_pred             CCC----C--CCCCeeEEEEccChH---HHHHHHHhccCCCcEEEE
Q psy7830         196 WGH----A--EGGPYDVIFFGAGTT---EVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       196 ~~~----~--~~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi  232 (364)
                      +..    .  +.+.||++|.+.--.   ...+++.+++|+||+|++
T Consensus       136 esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~  181 (237)
T KOG1663|consen  136 ESLDELLADGESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVV  181 (237)
T ss_pred             hhHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEE
Confidence            432    1  246899999987543   466889999999999986

>KOG2940|consensus

Probab=98.33  E-value=2.5e-07  Score=83.47  Aligned_cols=108  Identities=13%  Similarity=0.071  Sum_probs=83.8

Q ss_pred             HHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC
Q psy7830         124 CLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE  200 (364)
Q Consensus       124 ~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~  200 (364)
                      +++.+.+.-+....++|||||-|++...+...   +++-+|.|-.|++.++..-...       -.+...++|-+.+.+.
T Consensus        62 laDrvfD~kk~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~-------i~~~~~v~DEE~Ldf~  134 (325)
T KOG2940|consen   62 LADRVFDCKKSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPS-------IETSYFVGDEEFLDFK  134 (325)
T ss_pred             HHHHHHHHhhhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCc-------eEEEEEecchhccccc
Confidence            34444332345667999999999999998887   9999999999999987642111       1456677888877777


Q ss_pred             CCCeeEEEEccChHHH------HHHHHhccCCCcEEEEEEcCCC
Q psy7830         201 GGPYDVIFFGAGTTEV------SKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~~l------~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      ++++|+|++...++|+      ...+...|||+|.++.++....
T Consensus       135 ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fiasmlggd  178 (325)
T KOG2940|consen  135 ENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGD  178 (325)
T ss_pred             ccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhccc
Confidence            8899999999998873      4578889999999999886654

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.32  E-value=3.9e-06  Score=78.98  Aligned_cols=100  Identities=15%  Similarity=0.159  Sum_probs=80.0

Q ss_pred             ccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830         114 VMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL  191 (364)
Q Consensus       114 ~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~  191 (364)
                      .+..+.++..+++.+.  +.++..|||+|+|+|.+|..+++.  +|+++|+|+.+++..++++..       .++++++.
T Consensus        12 FL~~~~~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~-------~~~~~vi~   82 (262)
T PF00398_consen   12 FLVDPNIADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFAS-------NPNVEVIN   82 (262)
T ss_dssp             EEEHHHHHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTT-------CSSEEEEE
T ss_pred             eeCCHHHHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhh-------cccceeee
Confidence            3467889999999987  678999999999999999999988  999999999999999987753       35899999


Q ss_pred             cCCCCCCCCC---CCeeEEEEccChH---HHHHHHHh
Q psy7830         192 KDARWGHAEG---GPYDVIFFGAGTT---EVSKTILS  222 (364)
Q Consensus       192 ~D~~~~~~~~---~~fD~Ii~~~~~~---~l~~~l~~  222 (364)
                      +|+.......   .....|++|.+..   .++..+..
T Consensus        83 ~D~l~~~~~~~~~~~~~~vv~NlPy~is~~il~~ll~  119 (262)
T PF00398_consen   83 GDFLKWDLYDLLKNQPLLVVGNLPYNISSPILRKLLE  119 (262)
T ss_dssp             S-TTTSCGGGHCSSSEEEEEEEETGTGHHHHHHHHHH
T ss_pred             cchhccccHHhhcCCceEEEEEecccchHHHHHHHhh
Confidence            9998765432   3567889998874   24444444

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.27  E-value=1.6e-06  Score=76.03  Aligned_cols=91  Identities=19%  Similarity=0.220  Sum_probs=74.5

Q ss_pred             CCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccC
Q psy7830         135 GSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAG  212 (364)
Q Consensus       135 g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~  212 (364)
                      .+.+.|+|+|||.++..+++.  +|+++|.+|...+.|.+|+.-     -+..|++++.+|+....+  ...|+|+|-..
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v-----~g~~n~evv~gDA~~y~f--e~ADvvicEml  105 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHV-----PGDVNWEVVVGDARDYDF--ENADVVICEML  105 (252)
T ss_pred             hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCC-----CCCcceEEEecccccccc--cccceeHHHHh
Confidence            368999999999999999888  999999999999999999865     335799999999988765  46799987543


Q ss_pred             hHH--------HHHHHHhccCCCcEEEE
Q psy7830         213 TTE--------VSKTILSQLKPNGRIVA  232 (364)
Q Consensus       213 ~~~--------l~~~l~~~LkpGG~Lvi  232 (364)
                      -..        ++..+.+.||.++.++=
T Consensus       106 DTaLi~E~qVpV~n~vleFLr~d~tiiP  133 (252)
T COG4076         106 DTALIEEKQVPVINAVLEFLRYDPTIIP  133 (252)
T ss_pred             hHHhhcccccHHHHHHHHHhhcCCcccc
Confidence            322        45677888999888764

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.26  E-value=3.6e-06  Score=75.50  Aligned_cols=95  Identities=18%  Similarity=0.098  Sum_probs=63.6

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE  200 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~  200 (364)
                      ..++++|.. ..++..|-|+|||.+.++..+... .|+..|+...                    |-.+..+|+...+.+
T Consensus        61 d~iI~~l~~-~~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~--------------------n~~Vtacdia~vPL~  119 (219)
T PF05148_consen   61 DVIIEWLKK-RPKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAP--------------------NPRVTACDIANVPLE  119 (219)
T ss_dssp             HHHHHHHCT-S-TTS-EEEES-TT-HHHHH--S---EEEEESS-S--------------------STTEEES-TTS-S--
T ss_pred             HHHHHHHHh-cCCCEEEEECCCchHHHHHhcccCceEEEeeccCC--------------------CCCEEEecCccCcCC
Confidence            677888874 345679999999999999877665 8999998532                    223677999988888


Q ss_pred             CCCeeEEEEccCh-----HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         201 GGPYDVIFFGAGT-----TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       201 ~~~fD~Ii~~~~~-----~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +++.|+++...++     ...+.+..|.||+||.|.+..-..
T Consensus       120 ~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~S  161 (219)
T PF05148_consen  120 DESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKS  161 (219)
T ss_dssp             TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             CCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecc
Confidence            8999999876554     457899999999999999877554

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.25  E-value=9e-06  Score=77.32  Aligned_cols=102  Identities=19%  Similarity=0.218  Sum_probs=70.3

Q ss_pred             CCEEEEECCCccH----HHHHHHcc--------eEEEEeCCHHHHHHHHHHHHh-----c---------C-------CC-
Q psy7830         135 GSRVLDIGSGQGY----MATAKEWL--------SSVRQLLLPETLNNSLKNIKI-----S---------R-------PD-  180 (364)
Q Consensus       135 g~~VLDiGcGsG~----~a~~la~~--------~V~~vDis~~~l~~a~~~~~~-----~---------~-------~~-  180 (364)
                      .-+|+..||+||-    +++.+.+.        +|+|+|+|+.+++.|++-.-.     +         .       .. 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            3699999999994    33333331        799999999999999874200     0         0       00 


Q ss_pred             -CCC---CCCEEEEEcCCCCCC-CCCCCeeEEEEccChH--------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         181 -LLQ---SKTLEFILKDARWGH-AEGGPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       181 -~l~---~~~v~~~~~D~~~~~-~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                       .+.   ...|+|...|..+.. +..+.||+|+|..++.        .++..+.+.|+|||+|++....
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sE  264 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSE  264 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence             000   135788888887643 2247899999966553        3778999999999998865543

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.24  E-value=6.8e-06  Score=73.96  Aligned_cols=103  Identities=18%  Similarity=0.203  Sum_probs=63.2

Q ss_pred             CCCEEEEECCCccH----HHHHHHcc---------eEEEEeCCHHHHHHHHHHH--------------Hh------cCCC
Q psy7830         134 NGSRVLDIGSGQGY----MATAKEWL---------SSVRQLLLPETLNNSLKNI--------------KI------SRPD  180 (364)
Q Consensus       134 ~g~~VLDiGcGsG~----~a~~la~~---------~V~~vDis~~~l~~a~~~~--------------~~------~~~~  180 (364)
                      ..-+|+..||++|.    +++.+...         +|+|+|+|+.+++.|++-.              .+      +...
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            34689999999994    34444441         8999999999999998621              00      0000


Q ss_pred             CCC---CCCEEEEEcCCCCCCCCCCCeeEEEEccChH--------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         181 LLQ---SKTLEFILKDARWGHAEGGPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       181 ~l~---~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      .+.   ..+|+|...|..+..+..+.||+|+|-.++-        .+++.+.+.|+|||.|++....
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE  177 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSE  177 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCc
Confidence            000   1468999999887334457899999987763        4788999999999999975543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.22  E-value=4.9e-06  Score=75.39  Aligned_cols=113  Identities=23%  Similarity=0.294  Sum_probs=68.1

Q ss_pred             hHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHh-c--C-CCCCCCCCEE
Q psy7830         117 PPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKI-S--R-PDLLQSKTLE  188 (364)
Q Consensus       117 ~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~-~--~-~~~l~~~~v~  188 (364)
                      .|..+..+++.+.  +.+++.++|+|||.|.....++..    +++|||+.+...+.|+...+. .  . .......+++
T Consensus        27 ~~~~~~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~  104 (205)
T PF08123_consen   27 SPEFVSKILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVE  104 (205)
T ss_dssp             HHHHHHHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEE
T ss_pred             CHHHHHHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccce
Confidence            4556778888776  789999999999999998777755    699999999999888764432 0  0 0002235788


Q ss_pred             EEEcCCCCCCCC---CCCeeEEEEccCh--HHH---HHHHHhccCCCcEEE
Q psy7830         189 FILKDARWGHAE---GGPYDVIFFGAGT--TEV---SKTILSQLKPNGRIV  231 (364)
Q Consensus       189 ~~~~D~~~~~~~---~~~fD~Ii~~~~~--~~l---~~~l~~~LkpGG~Lv  231 (364)
                      +..+|+.+....   -...|+|++|..+  +.+   +..+...||+|-++|
T Consensus       105 l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~II  155 (205)
T PF08123_consen  105 LIHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARII  155 (205)
T ss_dssp             EECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEE
T ss_pred             eeccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEE
Confidence            888887643210   1347999998765  222   345566788887766

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>KOG2187|consensus

Probab=98.18  E-value=6.4e-06  Score=82.39  Aligned_cols=113  Identities=16%  Similarity=0.135  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC
Q psy7830         118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR  195 (364)
Q Consensus       118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~  195 (364)
                      +.++..+-+++.  +..+..++|++||||.++..+++.  +|+|+|+++++++.|++|+..|.     ..|.+|+++-++
T Consensus       369 evLys~i~e~~~--l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ng-----isNa~Fi~gqaE  441 (534)
T KOG2187|consen  369 EVLYSTIGEWAG--LPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQING-----ISNATFIVGQAE  441 (534)
T ss_pred             HHHHHHHHHHhC--CCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcC-----ccceeeeecchh
Confidence            344445555555  678889999999999999999998  99999999999999999999854     579999999655


Q ss_pred             CCCCCC-----CCee-EEEEccCh---H-HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         196 WGHAEG-----GPYD-VIFFGAGT---T-EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       196 ~~~~~~-----~~fD-~Ii~~~~~---~-~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +.....     ++=+ +++++.+-   + .++..+.+.-++-=.+++++...
T Consensus       442 ~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~  493 (534)
T KOG2187|consen  442 DLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPH  493 (534)
T ss_pred             hccchhcccCCCCCceEEEECCCcccccHHHHHHHHhccCccceEEEEcCHH
Confidence            443211     2335 44555443   2 24455555555777788887665

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.18  E-value=5.8e-06  Score=73.13  Aligned_cols=95  Identities=23%  Similarity=0.248  Sum_probs=74.1

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF  209 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~  209 (364)
                      -.|.+|||+|+|+|..+++.++.   .|++.|++|...+.++-|.+.|.      -++.+...|...   ++..||+|++
T Consensus        78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang------v~i~~~~~d~~g---~~~~~Dl~La  148 (218)
T COG3897          78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG------VSILFTHADLIG---SPPAFDLLLA  148 (218)
T ss_pred             cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc------ceeEEeeccccC---CCcceeEEEe
Confidence            36899999999999999988887   99999999999999999988854      378888888754   3467999987


Q ss_pred             ccCh-----HH-HHHHHHhccCCCcEEEEEEcCCC
Q psy7830         210 GAGT-----TE-VSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       210 ~~~~-----~~-l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      ...+     ++ +++ +...|+..|.-|+ +++++
T Consensus       149 gDlfy~~~~a~~l~~-~~~~l~~~g~~vl-vgdp~  181 (218)
T COG3897         149 GDLFYNHTEADRLIP-WKDRLAEAGAAVL-VGDPG  181 (218)
T ss_pred             eceecCchHHHHHHH-HHHHHHhCCCEEE-EeCCC
Confidence            6554     22 444 7777777777666 55554

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.08  E-value=2.1e-05  Score=75.15  Aligned_cols=88  Identities=13%  Similarity=0.011  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830         118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD  193 (364)
Q Consensus       118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D  193 (364)
                      |-+...+++.|.  +++|..++|.-+|.|+.+..+++.    +|+|+|.|+.+++.+++++...      ..++.++.++
T Consensus         6 pVll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~------~~R~~~i~~n   77 (305)
T TIGR00006         6 SVLLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF------EGRVVLIHDN   77 (305)
T ss_pred             chhHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc------CCcEEEEeCC
Confidence            558889999887  688999999999999999999876    8999999999999999988651      1478898888


Q ss_pred             CCCCCC-----CCCCeeEEEEccCh
Q psy7830         194 ARWGHA-----EGGPYDVIFFGAGT  213 (364)
Q Consensus       194 ~~~~~~-----~~~~fD~Ii~~~~~  213 (364)
                      ..+...     ...++|.|+++..+
T Consensus        78 F~~l~~~l~~~~~~~vDgIl~DLGv  102 (305)
T TIGR00006        78 FANFFEHLDELLVTKIDGILVDLGV  102 (305)
T ss_pred             HHHHHHHHHhcCCCcccEEEEeccC
Confidence            664321     12468988876443

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG2198|consensus

Probab=98.08  E-value=1.6e-05  Score=76.83  Aligned_cols=101  Identities=23%  Similarity=0.226  Sum_probs=77.7

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc--------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC----
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL--------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA----  199 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~--------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~----  199 (364)
                      ++||++|||+|+.+|..++.+.+.        .|++=|.++..+...+..+.+     +..+++.+...|+...+.    
T Consensus       153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~-----l~~~~~~v~~~~~~~~p~~~~~  227 (375)
T KOG2198|consen  153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKR-----LPSPNLLVTNHDASLFPNIYLK  227 (375)
T ss_pred             cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhc-----cCCcceeeecccceeccccccc
Confidence            789999999999999999887765        589999999998888887765     334566665555443221    


Q ss_pred             -----CCCCeeEEEEccChHH-----------------------------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         200 -----EGGPYDVIFFGAGTTE-----------------------------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       200 -----~~~~fD~Ii~~~~~~~-----------------------------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                           +...||.|+++.+|.+                             ++.+-.++||+||+||.|+-+-
T Consensus       228 ~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL  299 (375)
T KOG2198|consen  228 DGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL  299 (375)
T ss_pred             cCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence                 2246999999888742                             4567889999999999998654

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.05  E-value=1.4e-05  Score=72.65  Aligned_cols=96  Identities=26%  Similarity=0.197  Sum_probs=78.9

Q ss_pred             CCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCC-eeEEEE
Q psy7830         135 GSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGP-YDVIFF  209 (364)
Q Consensus       135 g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~-fD~Ii~  209 (364)
                      +.+++|||+|.|.-++.+|-.    +|+-+|.....+...+.-...     ++.+|++++++.+++.... .. ||+|.+
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~e-----L~L~nv~i~~~RaE~~~~~-~~~~D~vts  141 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKE-----LGLENVEIVHGRAEEFGQE-KKQYDVVTS  141 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHH-----hCCCCeEEehhhHhhcccc-cccCcEEEe
Confidence            689999999999988887733    999999999999999888877     6678999999999877643 23 999998


Q ss_pred             ccC--hHHHHHHHHhccCCCcEEEEEEcC
Q psy7830         210 GAG--TTEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       210 ~~~--~~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      -+.  +..+.+-+..++|+||.+++.-+.
T Consensus       142 RAva~L~~l~e~~~pllk~~g~~~~~k~~  170 (215)
T COG0357         142 RAVASLNVLLELCLPLLKVGGGFLAYKGL  170 (215)
T ss_pred             ehccchHHHHHHHHHhcccCCcchhhhHH
Confidence            654  457888899999999988654443

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.04  E-value=7.9e-05  Score=70.09  Aligned_cols=101  Identities=15%  Similarity=0.120  Sum_probs=69.7

Q ss_pred             CCEEEEECCCccH----HHHHHHcc---------eEEEEeCCHHHHHHHHHH------HHhcCC-----CC---C-C---
Q psy7830         135 GSRVLDIGSGQGY----MATAKEWL---------SSVRQLLLPETLNNSLKN------IKISRP-----DL---L-Q---  183 (364)
Q Consensus       135 g~~VLDiGcGsG~----~a~~la~~---------~V~~vDis~~~l~~a~~~------~~~~~~-----~~---l-~---  183 (364)
                      .-+|+-.||+||-    +++.+.+.         +|+|+|+|..+++.|+.-      ..++..     ++   . +   
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            5689999999993    33333222         899999999999999751      101100     00   0 0   


Q ss_pred             ------CCCEEEEEcCCCCCCCCCCCeeEEEEccCh--------HHHHHHHHhccCCCcEEEEEEc
Q psy7830         184 ------SKTLEFILKDARWGHAEGGPYDVIFFGAGT--------TEVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       184 ------~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~--------~~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                            ...|.|...|.....+..+.||+|+|-.++        ..+++.++..|+|||.|++--.
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s  242 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS  242 (268)
T ss_pred             EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence                  135778888877655334679999987665        3588999999999999996443

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.03  E-value=7.8e-05  Score=71.99  Aligned_cols=110  Identities=12%  Similarity=0.141  Sum_probs=75.8

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEE--EE
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEF--IL  191 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~--~~  191 (364)
                      ......+...+.++..++|+|||+|..+..+...        +++++|+|.++++.+.+++...     ..+.+++  ++
T Consensus        64 ~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~-----~~p~l~v~~l~  138 (319)
T TIGR03439        64 KKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG-----NFSHVRCAGLL  138 (319)
T ss_pred             HHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc-----cCCCeEEEEEE
Confidence            3444444445678889999999999998766554        6999999999999999998731     1245555  78


Q ss_pred             cCCCCC---CCC---CCCeeEEEEcc-Ch--------HHHHHHHHh-ccCCCcEEEEEEcC
Q psy7830         192 KDARWG---HAE---GGPYDVIFFGA-GT--------TEVSKTILS-QLKPNGRIVAPVGN  236 (364)
Q Consensus       192 ~D~~~~---~~~---~~~fD~Ii~~~-~~--------~~l~~~l~~-~LkpGG~Lvi~~~~  236 (364)
                      +|..+.   .+.   .....+|+.-+ .+        ..++..+++ .|+|||.|++.+..
T Consensus       139 gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~  199 (319)
T TIGR03439       139 GTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDG  199 (319)
T ss_pred             ecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCC
Confidence            876543   111   12355664322 21        136788888 99999999987743

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.01  E-value=6e-05  Score=68.37  Aligned_cols=110  Identities=23%  Similarity=0.251  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHh-ccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830         119 SYIARCLEQLV-DHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK  192 (364)
Q Consensus       119 ~~~a~~l~~L~-~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~  192 (364)
                      .+.+.++.-+. -++++|.+||-+|+++|....+++..     .|++||.++...+..-.-+++.       +||--+..
T Consensus        57 KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-------~NIiPIl~  129 (229)
T PF01269_consen   57 KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-------PNIIPILE  129 (229)
T ss_dssp             HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-------TTEEEEES
T ss_pred             HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-------Cceeeeec
Confidence            45555555443 23689999999999999999888876     8999999996655554444331       48999999


Q ss_pred             CCCCCCC---CCCCeeEEEEccChH----HHHHHHHhccCCCcEEEEEEc
Q psy7830         193 DARWGHA---EGGPYDVIFFGAGTT----EVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       193 D~~~~~~---~~~~fD~Ii~~~~~~----~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      |+.....   --+..|+|+++.+-+    -+..++...||+||.+++.+-
T Consensus       130 DAr~P~~Y~~lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iK  179 (229)
T PF01269_consen  130 DARHPEKYRMLVEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIISIK  179 (229)
T ss_dssp             -TTSGGGGTTTS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCChHHhhcccccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence            9875321   125799999986543    356788889999999998873

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.99  E-value=1.5e-05  Score=70.47  Aligned_cols=100  Identities=22%  Similarity=0.184  Sum_probs=62.7

Q ss_pred             HHHHHHHhccC--CC--CCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830         122 ARCLEQLVDHL--QN--GSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK  192 (364)
Q Consensus       122 a~~l~~L~~~l--~~--g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~  192 (364)
                      -++.+.+..+-  .+  +.+|||+||++|+++..+.+.     +|+|+|+.+.         ..       ..++.++.+
T Consensus         7 ~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~-------~~~~~~i~~   70 (181)
T PF01728_consen    7 FKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DP-------LQNVSFIQG   70 (181)
T ss_dssp             HHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS--------TTEEBTTG
T ss_pred             HHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc---------cc-------ccceeeeec
Confidence            34555554332  34  489999999999999999877     9999999876         10       134555555


Q ss_pred             CCCCC---------CC-CCCCeeEEEEccChH-----------H------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         193 DARWG---------HA-EGGPYDVIFFGAGTT-----------E------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       193 D~~~~---------~~-~~~~fD~Ii~~~~~~-----------~------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      |+...         .. ...+||+|+++....           .      .+..+.+.|++||.+|+-+-..
T Consensus        71 d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~  142 (181)
T PF01728_consen   71 DITNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG  142 (181)
T ss_dssp             GGEEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred             ccchhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence            54321         11 125899999988321           1      2245567899999999877553

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.98  E-value=0.00017  Score=67.80  Aligned_cols=100  Identities=16%  Similarity=0.065  Sum_probs=76.4

Q ss_pred             CCCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEcCCCCCC---CCCCC
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILKDARWGH---AEGGP  203 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~D~~~~~---~~~~~  203 (364)
                      ..-+||||.||.|.....+...      +|...|.++..++..++.++.     .+..++ +|.++|+.+..   .-...
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~-----~gL~~i~~f~~~dAfd~~~l~~l~p~  209 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAE-----RGLEDIARFEQGDAFDRDSLAALDPA  209 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHH-----cCCccceEEEecCCCCHhHhhccCCC
Confidence            4468999999999877666544      899999999999999999988     234565 99999987642   11235


Q ss_pred             eeEEEEccChHH---------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830         204 YDVIFFGAGTTE---------VSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       204 fD~Ii~~~~~~~---------l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      .+++++...++-         .+..+.+.+.|||+||.+-.+..
T Consensus       210 P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwH  253 (311)
T PF12147_consen  210 PTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWH  253 (311)
T ss_pred             CCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCC
Confidence            789888776642         35678889999999998765543

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.96  E-value=7.2e-05  Score=67.31  Aligned_cols=101  Identities=24%  Similarity=0.235  Sum_probs=73.5

Q ss_pred             HHHHHHHhc--cCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC
Q psy7830         122 ARCLEQLVD--HLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA  194 (364)
Q Consensus       122 a~~l~~L~~--~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~  194 (364)
                      -++++...+  .+++++.|+|+||.+|..+..+++.     .|+++|+.|-..                .++|.++++|+
T Consensus        31 ~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----------------~~~V~~iq~d~   94 (205)
T COG0293          31 YKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----------------IPGVIFLQGDI   94 (205)
T ss_pred             HHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----------------CCCceEEeeec
Confidence            344444433  3578999999999999999999887     599999986421                25799999998


Q ss_pred             CCCCC--------CCCCeeEEEEccCh--------HH---------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830         195 RWGHA--------EGGPYDVIFFGAGT--------TE---------VSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       195 ~~~~~--------~~~~fD~Ii~~~~~--------~~---------l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      +....        ...++|+|+++..-        .+         .+.-....|+|||.+++.+-..+
T Consensus        95 ~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~  163 (205)
T COG0293          95 TDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE  163 (205)
T ss_pred             cCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence            75321        12357999987654        12         34566779999999999885544

>KOG3045|consensus

Probab=97.92  E-value=4.5e-05  Score=70.25  Aligned_cols=94  Identities=18%  Similarity=0.144  Sum_probs=71.9

Q ss_pred             HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC
Q psy7830         121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA  199 (364)
Q Consensus       121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~  199 (364)
                      +..++++|.. ......|-|+|||-+.++.  ... .|++.|+.+                    .|-+++.+|+...+.
T Consensus       168 ld~ii~~ik~-r~~~~vIaD~GCGEakiA~--~~~~kV~SfDL~a--------------------~~~~V~~cDm~~vPl  224 (325)
T KOG3045|consen  168 LDVIIRKIKR-RPKNIVIADFGCGEAKIAS--SERHKVHSFDLVA--------------------VNERVIACDMRNVPL  224 (325)
T ss_pred             HHHHHHHHHh-CcCceEEEecccchhhhhh--ccccceeeeeeec--------------------CCCceeeccccCCcC
Confidence            3667777763 3445678899999998876  233 999999742                    255678899999888


Q ss_pred             CCCCeeEEEEccCh-----HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         200 EGGPYDVIFFGAGT-----TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       200 ~~~~fD~Ii~~~~~-----~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ++++.|+++...++     ..++.++.+.|++||.+.+..-..
T Consensus       225 ~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~S  267 (325)
T KOG3045|consen  225 EDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKS  267 (325)
T ss_pred             ccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhh
Confidence            88999998765544     457899999999999999877554

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.89  E-value=1.7e-05  Score=79.51  Aligned_cols=92  Identities=13%  Similarity=0.091  Sum_probs=60.7

Q ss_pred             EEEEECCCccHHHHHHHcceEEEE-----eCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEcc
Q psy7830         137 RVLDIGSGQGYMATAKEWLSSVRQ-----LLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGA  211 (364)
Q Consensus       137 ~VLDiGcGsG~~a~~la~~~V~~v-----Dis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~  211 (364)
                      .+||+|||+|.++..|..+.|+.+     |..+..++.|-++   +      .+.+--+.+ ...+++.+..||+|+|..
T Consensus       120 ~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR---G------vpa~~~~~~-s~rLPfp~~~fDmvHcsr  189 (506)
T PF03141_consen  120 TALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER---G------VPAMIGVLG-SQRLPFPSNAFDMVHCSR  189 (506)
T ss_pred             EEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc---C------cchhhhhhc-cccccCCccchhhhhccc
Confidence            579999999999999999833333     4444555555443   1      111111111 234566678999998765


Q ss_pred             ChH-H------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830         212 GTT-E------VSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       212 ~~~-~------l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      ... +      ++-++-++|+|||+++.+..+..
T Consensus       190 c~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~  223 (506)
T PF03141_consen  190 CLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY  223 (506)
T ss_pred             ccccchhcccceeehhhhhhccCceEEecCCccc
Confidence            442 2      45688999999999999887643

; GO: 0008168 methyltransferase activity

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.87  E-value=0.00012  Score=62.27  Aligned_cols=98  Identities=22%  Similarity=0.276  Sum_probs=64.6

Q ss_pred             CCCCEEEEECCCccHHHHHHHc-----c---eEEEEeCCHHHHHHHHHHHHhcCCCCCCC-CCEEEEEcCCCCCCCCCCC
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEW-----L---SSVRQLLLPETLNNSLKNIKISRPDLLQS-KTLEFILKDARWGHAEGGP  203 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~-----~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~-~~v~~~~~D~~~~~~~~~~  203 (364)
                      .+...|+|+|||.|+++..++.     .   +|+++|.++..++.+.++.+...   ... .++.+..++...... ...
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~   99 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG---SDLEKRLSFIQGDIADESS-SDP   99 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc---chhhccchhhccchhhhcc-cCC
Confidence            5678999999999999999998     4   99999999999999998887711   011 456666666543322 345


Q ss_pred             eeEEEEccChHHHHHHHHh-ccCCCcEEEEEE
Q psy7830         204 YDVIFFGAGTTEVSKTILS-QLKPNGRIVAPV  234 (364)
Q Consensus       204 fD~Ii~~~~~~~l~~~l~~-~LkpGG~Lvi~~  234 (364)
                      .++++.--.+..+...+.+ .++++-..++.+
T Consensus       100 ~~~~vgLHaCG~Ls~~~l~~~~~~~~~~l~~v  131 (141)
T PF13679_consen  100 PDILVGLHACGDLSDRALRLFIRPNARFLVLV  131 (141)
T ss_pred             CeEEEEeecccchHHHHHHHHHHcCCCEEEEc
Confidence            6777765555444332222 223554444433

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.84  E-value=0.00013  Score=66.09  Aligned_cols=95  Identities=21%  Similarity=0.222  Sum_probs=63.8

Q ss_pred             EEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccCh
Q psy7830         138 VLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGT  213 (364)
Q Consensus       138 VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~  213 (364)
                      |.||||--|++.+.|.+.    +++++|+++.-++.|++++....   + .+++++..+|........+..|.|+..++-
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~---l-~~~i~~rlgdGL~~l~~~e~~d~ivIAGMG   76 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG---L-EDRIEVRLGDGLEVLKPGEDVDTIVIAGMG   76 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-----TTTEEEEE-SGGGG--GGG---EEEEEEE-
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---C-cccEEEEECCcccccCCCCCCCEEEEecCC
Confidence            689999999999999988    89999999999999999999822   2 358999999987655443347877654433


Q ss_pred             H----HHHHHHHhccCCCcEEEEEEcC
Q psy7830         214 T----EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       214 ~----~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      .    .+++.....++....|++.-..
T Consensus        77 G~lI~~ILe~~~~~~~~~~~lILqP~~  103 (205)
T PF04816_consen   77 GELIIEILEAGPEKLSSAKRLILQPNT  103 (205)
T ss_dssp             HHHHHHHHHHTGGGGTT--EEEEEESS
T ss_pred             HHHHHHHHHhhHHHhccCCeEEEeCCC
Confidence            2    3445555556555567765544

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.72  E-value=0.00056  Score=55.68  Aligned_cols=96  Identities=26%  Similarity=0.225  Sum_probs=66.4

Q ss_pred             EEEECCCccHHH--HHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC--CCCCC-CCeeEEEEc
Q psy7830         138 VLDIGSGQGYMA--TAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW--GHAEG-GPYDVIFFG  210 (364)
Q Consensus       138 VLDiGcGsG~~a--~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~--~~~~~-~~fD~Ii~~  210 (364)
                      ++|+|||+|..+  ..+...  .++++|+++.++..++..... .    ....+.+...|...  ..... ..||++.+.
T Consensus        52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  126 (257)
T COG0500          52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-A----GLGLVDFVVADALGGVLPFEDSASFDLVISL  126 (257)
T ss_pred             eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c----CCCceEEEEeccccCCCCCCCCCceeEEeee
Confidence            999999999854  222222  688899999999985554422 1    00116788888765  34433 379999444


Q ss_pred             cCh-----HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         211 AGT-----TEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       211 ~~~-----~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      ...     ......+.+.++|+|.+++......
T Consensus       127 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  159 (257)
T COG0500         127 LVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD  159 (257)
T ss_pred             eehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence            443     5677899999999999998887643

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.71  E-value=1.5e-05  Score=64.11  Aligned_cols=90  Identities=28%  Similarity=0.313  Sum_probs=39.8

Q ss_pred             EEECCCccHHHHHHHcc-------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC--CCCeeEEEE
Q psy7830         139 LDIGSGQGYMATAKEWL-------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE--GGPYDVIFF  209 (364)
Q Consensus       139 LDiGcGsG~~a~~la~~-------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~--~~~fD~Ii~  209 (364)
                      ||+|+..|..+..+++.       +++++|..+. .+..++.+++..   + ..+++++.++..+....  .++||+|+.
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~---~-~~~~~~~~g~s~~~l~~~~~~~~dli~i   75 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG---L-SDRVEFIQGDSPDFLPSLPDGPIDLIFI   75 (106)
T ss_dssp             --------------------------EEEESS-------------GG---G--BTEEEEES-THHHHHHHHH--EEEEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcC---C-CCeEEEEEcCcHHHHHHcCCCCEEEEEE
Confidence            68999999999888865       5899999996 333333333210   1 24799999998654221  368999999


Q ss_pred             ccCh--H---HHHHHHHhccCCCcEEEEE
Q psy7830         210 GAGT--T---EVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       210 ~~~~--~---~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +..-  +   .-++.+.+.|+|||++++-
T Consensus        76 Dg~H~~~~~~~dl~~~~~~l~~ggviv~d  104 (106)
T PF13578_consen   76 DGDHSYEAVLRDLENALPRLAPGGVIVFD  104 (106)
T ss_dssp             ES---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            8862  2   3467888999999999873

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.71  E-value=0.00015  Score=69.91  Aligned_cols=84  Identities=14%  Similarity=0.064  Sum_probs=63.4

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF  209 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~  209 (364)
                      +.+|+++||+||++|.+|..+.+.  +|++||..+- -    ..+.       ..++|.....|.....+..+.+|.+++
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l-~----~~L~-------~~~~V~h~~~d~fr~~p~~~~vDwvVc  276 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPM-A----QSLM-------DTGQVEHLRADGFKFRPPRKNVDWLVC  276 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhc-C----Hhhh-------CCCCEEEEeccCcccCCCCCCCCEEEE
Confidence            368999999999999999999998  9999996542 1    2222       236899999998776544568999999


Q ss_pred             ccChH--HHHHHHHhccCCC
Q psy7830         210 GAGTT--EVSKTILSQLKPN  227 (364)
Q Consensus       210 ~~~~~--~l~~~l~~~LkpG  227 (364)
                      +....  .+...+.+.|..|
T Consensus       277 Dmve~P~rva~lm~~Wl~~g  296 (357)
T PRK11760        277 DMVEKPARVAELMAQWLVNG  296 (357)
T ss_pred             ecccCHHHHHHHHHHHHhcC
Confidence            98763  4556666666554

>PRK10742 putative methyltransferase; Provisional

Probab=97.68  E-value=0.00012  Score=67.67  Aligned_cols=90  Identities=10%  Similarity=0.010  Sum_probs=69.9

Q ss_pred             HHHHHhccCCCCC--EEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHh-cCCCCCCC---CCEEEEEcCCC
Q psy7830         124 CLEQLVDHLQNGS--RVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKI-SRPDLLQS---KTLEFILKDAR  195 (364)
Q Consensus       124 ~l~~L~~~l~~g~--~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~-~~~~~l~~---~~v~~~~~D~~  195 (364)
                      +++.+.  +++|.  +|||+-+|+|..++.++.+  +|+++|.++.+....++++++ .....++.   .+++++.+|..
T Consensus        78 l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~  155 (250)
T PRK10742         78 VAKAVG--IKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL  155 (250)
T ss_pred             HHHHhC--CCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHH
Confidence            344444  67888  9999999999999999998  999999999999999999887 21111122   47899999987


Q ss_pred             CCCCC-CCCeeEEEEccChHH
Q psy7830         196 WGHAE-GGPYDVIFFGAGTTE  215 (364)
Q Consensus       196 ~~~~~-~~~fD~Ii~~~~~~~  215 (364)
                      ..... ...||+|+.+.++++
T Consensus       156 ~~L~~~~~~fDVVYlDPMfp~  176 (250)
T PRK10742        156 TALTDITPRPQVVYLDPMFPH  176 (250)
T ss_pred             HHHhhCCCCCcEEEECCCCCC
Confidence            65432 247999999988865

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.58  E-value=0.00063  Score=60.73  Aligned_cols=130  Identities=18%  Similarity=0.174  Sum_probs=91.3

Q ss_pred             ccccCCCceecCC-C---ccChHHHHHHHHHHHhc-cCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHH
Q psy7830         100 FGFCDIPYAFANQ-V---VMEPPSYIARCLEQLVD-HLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNS  170 (364)
Q Consensus       100 ~~y~d~~l~ig~g-~---~~s~P~~~a~~l~~L~~-~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a  170 (364)
                      ..|.+.-+.++.+ .   .+-+..+.+.++.-|.. .+++|.+||=+|+.+|....+++..    .+++||.++......
T Consensus        37 ~VYGE~ii~~~~~eYR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reL  116 (231)
T COG1889          37 RVYGERIIKVEGEEYREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMREL  116 (231)
T ss_pred             cccCceeEEecCcceeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHH
Confidence            3566555555543 1   12223355666665542 3679999999999999999998887    899999999887766


Q ss_pred             HHHHHhcCCCCCCCCCEEEEEcCCCCCCC---CCCCeeEEEEccChHH----HHHHHHhccCCCcEEEEEEcC
Q psy7830         171 LKNIKISRPDLLQSKTLEFILKDARWGHA---EGGPYDVIFFGAGTTE----VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       171 ~~~~~~~~~~~l~~~~v~~~~~D~~~~~~---~~~~fD~Ii~~~~~~~----l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      -.-+++.       +|+--+.+|+.....   --+..|+|+.+.+-+.    +..++...||+||.+++.+-.
T Consensus       117 l~~a~~R-------~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKA  182 (231)
T COG1889         117 LDVAEKR-------PNIIPILEDARKPEKYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIAIKA  182 (231)
T ss_pred             HHHHHhC-------CCceeeecccCCcHHhhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEEEEe
Confidence            5555442       488889999875321   0146899998766542    567888999999988887744

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.58  E-value=0.00097  Score=61.07  Aligned_cols=95  Identities=22%  Similarity=0.169  Sum_probs=67.9

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEE-EEcCCCCCCCC--CCCeeE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEF-ILKDARWGHAE--GGPYDV  206 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~-~~~D~~~~~~~--~~~fD~  206 (364)
                      .+|..+||+|+-||.+|..+.+.   +|+|+|..-..+..--++          .+++.. ...|++...++  .+..|+
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~----------d~rV~~~E~tN~r~l~~~~~~~~~d~  147 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN----------DPRVIVLERTNVRYLTPEDFTEKPDL  147 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc----------CCcEEEEecCChhhCCHHHcccCCCe
Confidence            57899999999999999999888   999999986544432221          134433 33455543322  235788


Q ss_pred             EEEccCh---HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         207 IFFGAGT---TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       207 Ii~~~~~---~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      |+++.++   ..+++.+...++++|.++.-+-+.
T Consensus       148 ~v~DvSFISL~~iLp~l~~l~~~~~~~v~LvKPQ  181 (245)
T COG1189         148 IVIDVSFISLKLILPALLLLLKDGGDLVLLVKPQ  181 (245)
T ss_pred             EEEEeehhhHHHHHHHHHHhcCCCceEEEEecch
Confidence            8877665   457899999999999999877653

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.56  E-value=0.00044  Score=62.58  Aligned_cols=101  Identities=23%  Similarity=0.316  Sum_probs=74.4

Q ss_pred             HhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCC
Q psy7830         128 LVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGP  203 (364)
Q Consensus       128 L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~  203 (364)
                      +...++.+.++.|+||--+|+...+.+.    .+++.|+++..++.|.+++.++.   + .+++++..+|.......+..
T Consensus        10 va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~---l-~~~i~vr~~dgl~~l~~~d~   85 (226)
T COG2384          10 VANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN---L-SERIDVRLGDGLAVLELEDE   85 (226)
T ss_pred             HHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC---C-cceEEEeccCCccccCccCC
Confidence            3334567888999999999999999887    89999999999999999998833   2 36899999998765554557


Q ss_pred             eeEEEEccChH----HHHHHHHhccCCCcEEEE
Q psy7830         204 YDVIFFGAGTT----EVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       204 fD~Ii~~~~~~----~l~~~l~~~LkpGG~Lvi  232 (364)
                      +|+|+..++-.    .++++-.+.|+.=-++++
T Consensus        86 ~d~ivIAGMGG~lI~~ILee~~~~l~~~~rlIL  118 (226)
T COG2384          86 IDVIVIAGMGGTLIREILEEGKEKLKGVERLIL  118 (226)
T ss_pred             cCEEEEeCCcHHHHHHHHHHhhhhhcCcceEEE
Confidence            89886655433    344444444443334554

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.55  E-value=0.0011  Score=62.62  Aligned_cols=97  Identities=25%  Similarity=0.244  Sum_probs=62.4

Q ss_pred             CEEEEECCCccHHH-HHHHcc-----eEEEEeCCHHHHHHHHHHHHh-cCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         136 SRVLDIGSGQGYMA-TAKEWL-----SSVRQLLLPETLNNSLKNIKI-SRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       136 ~~VLDiGcGsG~~a-~~la~~-----~V~~vDis~~~l~~a~~~~~~-~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      .+|+=||||+=-+| +.+++.     .|+++|+|+++++.+++-+.. ..   + ..++.|+++|......+...||+|+
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~---L-~~~m~f~~~d~~~~~~dl~~~DvV~  197 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG---L-SKRMSFITADVLDVTYDLKEYDVVF  197 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H---H--SSEEEEES-GGGG-GG----SEEE
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc---c-cCCeEEEecchhccccccccCCEEE
Confidence            59999999987666 444433     689999999999999987762 11   2 2579999999876554446899998


Q ss_pred             EccChH-------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         209 FGAGTT-------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       209 ~~~~~~-------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ......       .++..+.+.++||..+++....
T Consensus       198 lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~  232 (276)
T PF03059_consen  198 LAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAH  232 (276)
T ss_dssp             E-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred             EhhhcccccchHHHHHHHHHhhCCCCcEEEEecch
Confidence            766553       5899999999999999987544

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.53  E-value=0.00031  Score=67.28  Aligned_cols=88  Identities=22%  Similarity=0.171  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830         118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD  193 (364)
Q Consensus       118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D  193 (364)
                      |-+...+++.|.  ++++..++|.--|.|+.+..+++.    +|+|+|.|+.+++.+++++..     . .+++.++.++
T Consensus         6 PVll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~-----~-~~r~~~~~~~   77 (310)
T PF01795_consen    6 PVLLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK-----F-DDRFIFIHGN   77 (310)
T ss_dssp             -TTHHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC-----C-CTTEEEEES-
T ss_pred             cccHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh-----c-cceEEEEecc
Confidence            557889999998  788999999999999999999876    999999999999999988765     1 2589999988


Q ss_pred             CCCCC-----C-CCCCeeEEEEccCh
Q psy7830         194 ARWGH-----A-EGGPYDVIFFGAGT  213 (364)
Q Consensus       194 ~~~~~-----~-~~~~fD~Ii~~~~~  213 (364)
                      ..++.     . ....+|-|+++..+
T Consensus        78 F~~l~~~l~~~~~~~~~dgiL~DLGv  103 (310)
T PF01795_consen   78 FSNLDEYLKELNGINKVDGILFDLGV  103 (310)
T ss_dssp             GGGHHHHHHHTTTTS-EEEEEEE-S-
T ss_pred             HHHHHHHHHHccCCCccCEEEEcccc
Confidence            76432     1 22479999876443

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.47  E-value=0.00069  Score=64.19  Aligned_cols=96  Identities=18%  Similarity=0.165  Sum_probs=57.8

Q ss_pred             CCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      ...+|||+|||+|..+.++...     +++++|.|+.|++.++.-+....    ........ .+......+..+.|+|+
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~----~~~~~~~~-~~~~~~~~~~~~~DLvi  107 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP----NNRNAEWR-RVLYRDFLPFPPDDLVI  107 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc----ccccchhh-hhhhcccccCCCCcEEE
Confidence            3468999999999876655543     89999999999999988765511    00111111 11110011123449999


Q ss_pred             EccChHH--------HHHHHHhccCCCcEEEEEEcC
Q psy7830         209 FGAGTTE--------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       209 ~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +...+.+        +.+.+.+.+++  .||+....
T Consensus       108 ~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpG  141 (274)
T PF09243_consen  108 ASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPG  141 (274)
T ss_pred             EehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCC
Confidence            8777654        34455555544  66665544

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.45  E-value=0.00039  Score=58.63  Aligned_cols=54  Identities=15%  Similarity=0.168  Sum_probs=45.6

Q ss_pred             EEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC
Q psy7830         137 RVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR  195 (364)
Q Consensus       137 ~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~  195 (364)
                      .|||+|||.|..+..+++.    +|+++|.++.+++.+++++..+.     .+++.++...+.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~-----~~~v~~~~~al~   58 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN-----LPNVVLLNAAVG   58 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC-----CCcEEEEEeeee
Confidence            3899999999999998877    69999999999999999988733     346888776654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.43  E-value=0.0011  Score=61.89  Aligned_cols=104  Identities=17%  Similarity=0.138  Sum_probs=64.3

Q ss_pred             CCCCEEEEECCCccHHHHHHH-cc--eEEEEeCCHHHHHHHHHHHHhc-C-CC---------CCCC------------CC
Q psy7830         133 QNGSRVLDIGSGQGYMATAKE-WL--SSVRQLLLPETLNNSLKNIKIS-R-PD---------LLQS------------KT  186 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la-~~--~V~~vDis~~~l~~a~~~~~~~-~-~~---------~l~~------------~~  186 (364)
                      ..|.++||||||+-..-..-+ ..  +|+..|..+...+..++-++.. . .+         .-+.            ..
T Consensus        55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~  134 (256)
T PF01234_consen   55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA  134 (256)
T ss_dssp             S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence            357799999999965533222 33  8999999999988776654331 0 00         0000            12


Q ss_pred             E-EEEEcCCCCCCCCC------CCeeEEEEccChHH----------HHHHHHhccCCCcEEEEEEcC
Q psy7830         187 L-EFILKDARWGHAEG------GPYDVIFFGAGTTE----------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       187 v-~~~~~D~~~~~~~~------~~fD~Ii~~~~~~~----------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      | +++.+|+....+-.      .+||+|++...++.          .++++.++|||||.|++...-
T Consensus       135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l  201 (256)
T PF01234_consen  135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL  201 (256)
T ss_dssp             EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence            3 36778887644321      24999998777653          568999999999999986643

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.43  E-value=0.00099  Score=63.05  Aligned_cols=85  Identities=14%  Similarity=0.051  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830         118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK  192 (364)
Q Consensus       118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~  192 (364)
                      |-+...+++.|.  ++++...+|.--|.|+.+..+...     +++++|.|+.+++.|++++....      +++.++..
T Consensus         9 pVLl~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~------~r~~~v~~   80 (314)
T COG0275           9 PVLLNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD------GRVTLVHG   80 (314)
T ss_pred             chHHHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC------CcEEEEeC
Confidence            557888999988  788999999999999999888876     79999999999999999987621      48888888


Q ss_pred             CCCCCCC-----CCCCeeEEEEc
Q psy7830         193 DARWGHA-----EGGPYDVIFFG  210 (364)
Q Consensus       193 D~~~~~~-----~~~~fD~Ii~~  210 (364)
                      +..++..     .-+++|-|+.+
T Consensus        81 ~F~~l~~~l~~~~i~~vDGiL~D  103 (314)
T COG0275          81 NFANLAEALKELGIGKVDGILLD  103 (314)
T ss_pred             cHHHHHHHHHhcCCCceeEEEEe
Confidence            7543221     12467777654

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.40  E-value=0.0014  Score=62.57  Aligned_cols=77  Identities=21%  Similarity=0.247  Sum_probs=46.2

Q ss_pred             CCEEEEECCCccHH-HHHHHcc---eEEEEeCCHHHHHHHHHHHHhc-CCCCCCCCCEEEEEcCC----CCCC-CCCCCe
Q psy7830         135 GSRVLDIGSGQGYM-ATAKEWL---SSVRQLLLPETLNNSLKNIKIS-RPDLLQSKTLEFILKDA----RWGH-AEGGPY  204 (364)
Q Consensus       135 g~~VLDiGcGsG~~-a~~la~~---~V~~vDis~~~l~~a~~~~~~~-~~~~l~~~~v~~~~~D~----~~~~-~~~~~f  204 (364)
                      .-++||||||...+ .+..++.   +++|+|+|+..++.|++|+++| .   +. .+|+++...-    .... ...+.|
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~---L~-~~I~l~~~~~~~~i~~~i~~~~e~~  178 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPN---LE-SRIELRKQKNPDNIFDGIIQPNERF  178 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T----T-TTEEEEE--ST-SSTTTSTT--S-E
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccc---cc-cceEEEEcCCccccchhhhccccee
Confidence            45799999998744 4444443   9999999999999999999986 4   32 4788875532    2211 123579


Q ss_pred             eEEEEccChHH
Q psy7830         205 DVIFFGAGTTE  215 (364)
Q Consensus       205 D~Ii~~~~~~~  215 (364)
                      |+++||.++..
T Consensus       179 dftmCNPPFy~  189 (299)
T PF05971_consen  179 DFTMCNPPFYS  189 (299)
T ss_dssp             EEEEE-----S
T ss_pred             eEEecCCcccc
Confidence            99999999864

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG1269|consensus

Probab=97.27  E-value=0.00055  Score=67.24  Aligned_cols=107  Identities=21%  Similarity=0.173  Sum_probs=80.2

Q ss_pred             HHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCC
Q psy7830         125 LEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEG  201 (364)
Q Consensus       125 l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~  201 (364)
                      +..+.....++..++|+|||-|.....++..   .++++|.++.-+..+........   +. .+-.++.+|+...++++
T Consensus       101 ~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~---l~-~k~~~~~~~~~~~~fed  176 (364)
T KOG1269|consen  101 IVALRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAY---LD-NKCNFVVADFGKMPFED  176 (364)
T ss_pred             hHHHhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHH---hh-hhcceehhhhhcCCCCc
Confidence            3444444678889999999999999888876   89999999888777766544311   11 12334888988888888


Q ss_pred             CCeeEEEEccChH------HHHHHHHhccCCCcEEEEEEc
Q psy7830         202 GPYDVIFFGAGTT------EVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       202 ~~fD~Ii~~~~~~------~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      ..||.+.+.....      .+..++.+.++|||+.+....
T Consensus       177 n~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~  216 (364)
T KOG1269|consen  177 NTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEW  216 (364)
T ss_pred             cccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence            9999997765554      367899999999999987553

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.26  E-value=0.003  Score=64.74  Aligned_cols=120  Identities=17%  Similarity=0.153  Sum_probs=86.0

Q ss_pred             CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--------eEEEEeCCHHHHHHHHHHHHhcCCCCCC
Q psy7830         112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--------SSVRQLLLPETLNNSLKNIKISRPDLLQ  183 (364)
Q Consensus       112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--------~V~~vDis~~~l~~a~~~~~~~~~~~l~  183 (364)
                      |.+.+...++..+.+.+.  +.+..+|+|..||+|.+.....+.        .++|.|+++.....|+.|+--+.   +.
T Consensus       166 GEfyTP~~v~~liv~~l~--~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhg---i~  240 (489)
T COG0286         166 GEFYTPREVSELIVELLD--PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHG---IE  240 (489)
T ss_pred             CccCChHHHHHHHHHHcC--CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhC---CC
Confidence            566666677777777776  467889999999999887665544        48999999999999999986622   21


Q ss_pred             CCCEEEEEcCCCCCCC-----CCCCeeEEEEccChHH-------------------------------HHHHHHhccCCC
Q psy7830         184 SKTLEFILKDARWGHA-----EGGPYDVIFFGAGTTE-------------------------------VSKTILSQLKPN  227 (364)
Q Consensus       184 ~~~v~~~~~D~~~~~~-----~~~~fD~Ii~~~~~~~-------------------------------l~~~l~~~LkpG  227 (364)
                      . ++....+|....+.     ..+.||.|++|.++..                               ....+...|+||
T Consensus       241 ~-~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~  319 (489)
T COG0286         241 G-DANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPG  319 (489)
T ss_pred             c-cccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCC
Confidence            1 34555555443321     2357999999887730                               236888999999


Q ss_pred             cEEEEEEcCC
Q psy7830         228 GRIVAPVGNV  237 (364)
Q Consensus       228 G~Lvi~~~~~  237 (364)
                      |+..+.+...
T Consensus       320 g~aaivl~~g  329 (489)
T COG0286         320 GRAAIVLPDG  329 (489)
T ss_pred             ceEEEEecCC
Confidence            8777766554

>KOG1331|consensus

Probab=97.24  E-value=0.0003  Score=65.87  Aligned_cols=92  Identities=21%  Similarity=0.145  Sum_probs=71.9

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc-eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEcCCCCCCCCCCCeeEEEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL-SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILKDARWGHAEGGPYDVIFF  209 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~-~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~D~~~~~~~~~~fD~Ii~  209 (364)
                      ...|..++|+|||.|-....- .. .++++|++...+..+++.            +. ....+|+...+..+.+||.+++
T Consensus        43 ~~~gsv~~d~gCGngky~~~~-p~~~~ig~D~c~~l~~~ak~~------------~~~~~~~ad~l~~p~~~~s~d~~ls  109 (293)
T KOG1331|consen   43 QPTGSVGLDVGCGNGKYLGVN-PLCLIIGCDLCTGLLGGAKRS------------GGDNVCRADALKLPFREESFDAALS  109 (293)
T ss_pred             cCCcceeeecccCCcccCcCC-CcceeeecchhhhhccccccC------------CCceeehhhhhcCCCCCCccccchh
Confidence            345889999999999654321 12 789999998888776642            22 5788999998888889999999


Q ss_pred             ccChHH---------HHHHHHhccCCCcEEEEEEcC
Q psy7830         210 GAGTTE---------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       210 ~~~~~~---------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ....+|         +++++.+.|+|||...+.+..
T Consensus       110 iavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa  145 (293)
T KOG1331|consen  110 IAVIHHLSTRERRERALEELLRVLRPGGNALVYVWA  145 (293)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence            888887         457899999999997776644

>KOG2730|consensus

Probab=97.24  E-value=0.00037  Score=62.88  Aligned_cols=74  Identities=16%  Similarity=0.148  Sum_probs=57.6

Q ss_pred             CCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHh-cCCCCCCCCCEEEEEcCCCCCCC----CCCCeeE
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKI-SRPDLLQSKTLEFILKDARWGHA----EGGPYDV  206 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~-~~~~~l~~~~v~~~~~D~~~~~~----~~~~fD~  206 (364)
                      ....|+|.-||-|+.++..+..  .|+++|+||..+..|+.|++- +.    . ++|+|++||..+...    ....+|+
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI----~-~rItFI~GD~ld~~~~lq~~K~~~~~  168 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGV----P-DRITFICGDFLDLASKLKADKIKYDC  168 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecC----C-ceeEEEechHHHHHHHHhhhhheeee
Confidence            4567999999999999888877  999999999999999999988 32    2 489999999875432    1233667


Q ss_pred             EEEccC
Q psy7830         207 IFFGAG  212 (364)
Q Consensus       207 Ii~~~~  212 (364)
                      |+...+
T Consensus       169 vf~spp  174 (263)
T KOG2730|consen  169 VFLSPP  174 (263)
T ss_pred             eecCCC
Confidence            765544

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.23  E-value=0.0013  Score=63.73  Aligned_cols=93  Identities=22%  Similarity=0.128  Sum_probs=67.7

Q ss_pred             CCCCCEEEEECCC-ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc-CCCCCCCCCCCeeE
Q psy7830         132 LQNGSRVLDIGSG-QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK-DARWGHAEGGPYDV  206 (364)
Q Consensus       132 l~~g~~VLDiGcG-sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~-D~~~~~~~~~~fD~  206 (364)
                      ++||++|+-+|+| -|.+++.+++.   +|+++|.+++..+.|++--         .+  .++.. |......-.+.||+
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lG---------Ad--~~i~~~~~~~~~~~~~~~d~  232 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLG---------AD--HVINSSDSDALEAVKEIADA  232 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhC---------Cc--EEEEcCCchhhHHhHhhCcE
Confidence            6899999999988 34666777774   9999999999999998742         11  12221 22111111134999


Q ss_pred             EEEccChHHHHHHHHhccCCCcEEEEEEcC
Q psy7830         207 IFFGAGTTEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       207 Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      |+...+ ...+....+.|++||++++.-..
T Consensus       233 ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         233 IIDTVG-PATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             EEECCC-hhhHHHHHHHHhcCCEEEEECCC
Confidence            999999 88899999999999999985444

>KOG3987|consensus

Probab=97.21  E-value=0.00017  Score=64.53  Aligned_cols=109  Identities=16%  Similarity=0.066  Sum_probs=74.0

Q ss_pred             ccChHHHHHHHHHHHhcc-CCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEE
Q psy7830         114 VMEPPSYIARCLEQLVDH-LQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFI  190 (364)
Q Consensus       114 ~~s~P~~~a~~l~~L~~~-l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~  190 (364)
                      .+-++...++++..=.+. -+...++||+|+|.|-.+..++..  +|++.|.|..|....++.            +..++
T Consensus        91 FifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk------------~ynVl  158 (288)
T KOG3987|consen   91 FIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK------------NYNVL  158 (288)
T ss_pred             EEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc------------CCcee
Confidence            444555556655532111 123468999999999999999988  999999999998776552            22222


Q ss_pred             EcCCCCCCCCCCCeeEEEEccChH------HHHHHHHhccCC-CcEEEEEEcC
Q psy7830         191 LKDARWGHAEGGPYDVIFFGAGTT------EVSKTILSQLKP-NGRIVAPVGN  236 (364)
Q Consensus       191 ~~D~~~~~~~~~~fD~Ii~~~~~~------~l~~~l~~~Lkp-GG~Lvi~~~~  236 (364)
                      ..  .+....+-+||+|.|-..+.      .+++.++.+|+| +|++++..--
T Consensus       159 ~~--~ew~~t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVL  209 (288)
T KOG3987|consen  159 TE--IEWLQTDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVL  209 (288)
T ss_pred             ee--hhhhhcCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEe
Confidence            21  11222345799998766654      378899999999 9988876643

>KOG1709|consensus

Probab=97.13  E-value=0.0041  Score=56.13  Aligned_cols=97  Identities=18%  Similarity=0.185  Sum_probs=72.9

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC---CCCCCCCCCCeeE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD---ARWGHAEGGPYDV  206 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D---~~~~~~~~~~fD~  206 (364)
                      .+|.+||++|-|-|+....+.+.   +=+.+|..|+.++..++..-.      ...||..+.+-   .....+ ++.||-
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~------ek~nViil~g~WeDvl~~L~-d~~FDG  172 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWR------EKENVIILEGRWEDVLNTLP-DKHFDG  172 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccc------cccceEEEecchHhhhcccc-ccCcce
Confidence            67999999999999999888877   667799999999988876433      23577777764   333333 567999


Q ss_pred             EEEccChH------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         207 IFFGAGTT------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       207 Ii~~~~~~------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      |+.+.-.+      ++.+.+.++|||+|++-+--+.
T Consensus       173 I~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~  208 (271)
T KOG1709|consen  173 IYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGL  208 (271)
T ss_pred             eEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCc
Confidence            98875532      3567899999999987664443

>KOG1596|consensus

Probab=97.07  E-value=0.0021  Score=58.88  Aligned_cols=95  Identities=24%  Similarity=0.288  Sum_probs=71.6

Q ss_pred             cCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHH----HHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC--
Q psy7830         131 HLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPE----TLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA--  199 (364)
Q Consensus       131 ~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~----~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~--  199 (364)
                      |++||.+||=+|+++|+...+.+..     .|++||.++.    ++..|+++           .||--+.-|+.....  
T Consensus       153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-----------tNiiPIiEDArhP~KYR  221 (317)
T KOG1596|consen  153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-----------TNIIPIIEDARHPAKYR  221 (317)
T ss_pred             eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-----------CCceeeeccCCCchhee
Confidence            4789999999999999998888877     8999999874    44444433           477778888865321  


Q ss_pred             -CCCCeeEEEEccChHH----HHHHHHhccCCCcEEEEEEcC
Q psy7830         200 -EGGPYDVIFFGAGTTE----VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       200 -~~~~fD~Ii~~~~~~~----l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                       .-+-.|+||++.+-+.    +.-+..-.||+||.+++++-.
T Consensus       222 mlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisika  263 (317)
T KOG1596|consen  222 MLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVISIKA  263 (317)
T ss_pred             eeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEEEec
Confidence             1145799998876543    344677889999999998854

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.02  E-value=0.023  Score=52.41  Aligned_cols=113  Identities=19%  Similarity=0.029  Sum_probs=63.3

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHH-HHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYM-ATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~-a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      ++.+++-.+...--.|.+||=+|=..-.. +.++...  +|+.+|+|+.+++..++.+++     .+. +|+.+..|...
T Consensus        30 ~~~Ra~~~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~-----~gl-~i~~~~~DlR~  103 (243)
T PF01861_consen   30 TLRRAALMAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEE-----EGL-PIEAVHYDLRD  103 (243)
T ss_dssp             HHHHHHHHHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHH-----HT---EEEE---TTS
T ss_pred             HHHHHHHHHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHH-----cCC-ceEEEEecccc
Confidence            33444333332224689999998554322 2333333  999999999999999999888     233 49999999988


Q ss_pred             CCCCC--CCeeEEEEccChH-----HHHHHHHhccCCCc-EEEEEEcCCC
Q psy7830         197 GHAEG--GPYDVIFFGAGTT-----EVSKTILSQLKPNG-RIVAPVGNVW  238 (364)
Q Consensus       197 ~~~~~--~~fD~Ii~~~~~~-----~l~~~l~~~LkpGG-~Lvi~~~~~~  238 (364)
                      ..++.  ++||+++.+.+..     -++......||..| ..+++.....
T Consensus       104 ~LP~~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~  153 (243)
T PF01861_consen  104 PLPEELRGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKE  153 (243)
T ss_dssp             ---TTTSS-BSEEEE---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT
T ss_pred             cCCHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCc
Confidence            76543  7899999998763     24566777777644 7777776654

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.02  E-value=0.0013  Score=65.06  Aligned_cols=100  Identities=18%  Similarity=0.168  Sum_probs=72.9

Q ss_pred             CCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC-CCCCeeEE
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA-EGGPYDVI  207 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~-~~~~fD~I  207 (364)
                      .+-+|||.=+|+|.=++..+..     +|++-|+|+.+++.+++|++.|.   +....+++...|+..+.. ....||+|
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~---~~~~~~~v~~~DAn~ll~~~~~~fD~I  125 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNG---LEDERIEVSNMDANVLLYSRQERFDVI  125 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT----SGCCEEEEES-HHHHHCHSTT-EEEE
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcc---ccCceEEEehhhHHHHhhhccccCCEE
Confidence            4568999999999988777654     99999999999999999998855   433368999999876542 34689999


Q ss_pred             EEccC--hHHHHHHHHhccCCCcEEEEEEcC
Q psy7830         208 FFGAG--TTEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       208 i~~~~--~~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      =.+.-  ..-+++...+.++.||.|.++..+
T Consensus       126 DlDPfGSp~pfldsA~~~v~~gGll~vTaTD  156 (377)
T PF02005_consen  126 DLDPFGSPAPFLDSALQAVKDGGLLCVTATD  156 (377)
T ss_dssp             EE--SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred             EeCCCCCccHhHHHHHHHhhcCCEEEEeccc
Confidence            77642  235678888999999999998855

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>KOG4589|consensus

Probab=96.99  E-value=0.0026  Score=56.16  Aligned_cols=91  Identities=22%  Similarity=0.194  Sum_probs=59.8

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc-CCCCCC-------
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK-DARWGH-------  198 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~-D~~~~~-------  198 (364)
                      ++|+++|||+||.+|..+..+-++     .|.|||+-.         +..       .+.+.++++ |+.+..       
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p-------~~Ga~~i~~~dvtdp~~~~ki~e  130 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEP-------PEGATIIQGNDVTDPETYRKIFE  130 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccC-------CCCcccccccccCCHHHHHHHHH
Confidence            579999999999999999888776     899999842         111       123444554 443210       


Q ss_pred             -CCCCCeeEEEEccChH-----------------HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         199 -AEGGPYDVIFFGAGTT-----------------EVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       199 -~~~~~fD~Ii~~~~~~-----------------~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                       .++.+.|+|+++..-.                 .++--....++|+|.+++-+....
T Consensus       131 ~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~  188 (232)
T KOG4589|consen  131 ALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS  188 (232)
T ss_pred             hCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence             1235678888765421                 123344567889999998776554

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.98  E-value=0.001  Score=59.95  Aligned_cols=101  Identities=13%  Similarity=0.098  Sum_probs=59.8

Q ss_pred             CCCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHh----cC--------------CC---------
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKI----SR--------------PD---------  180 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~----~~--------------~~---------  180 (364)
                      ..-++.|-|||+||+...+.-+      .|++.|+|+++++.|++|+.-    +.              ++         
T Consensus        51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s  130 (246)
T PF11599_consen   51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES  130 (246)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            3458999999999998666543      999999999999999998731    00              00         


Q ss_pred             ---------CC-CCCCEEEEEcCCCCCC-----CCCCCeeEEEEccCh---------------HHHHHHHHhccCCCcEE
Q psy7830         181 ---------LL-QSKTLEFILKDARWGH-----AEGGPYDVIFFGAGT---------------TEVSKTILSQLKPNGRI  230 (364)
Q Consensus       181 ---------~l-~~~~v~~~~~D~~~~~-----~~~~~fD~Ii~~~~~---------------~~l~~~l~~~LkpGG~L  230 (364)
                               .. +.....+.+.|+++..     ......|+|+.+.++               ..++..+...|..++++
T Consensus       131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV  210 (246)
T PF11599_consen  131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVV  210 (246)
T ss_dssp             HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EE
T ss_pred             HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEE
Confidence                     00 1123567778877521     112346999887554               23788999999667777


Q ss_pred             EEEE
Q psy7830         231 VAPV  234 (364)
Q Consensus       231 vi~~  234 (364)
                      +++.
T Consensus       211 ~v~~  214 (246)
T PF11599_consen  211 AVSD  214 (246)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            7643

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=96.93  E-value=0.0087  Score=56.41  Aligned_cols=102  Identities=24%  Similarity=0.119  Sum_probs=69.5

Q ss_pred             CCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHh----cC----------C---------CC-------
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKI----SR----------P---------DL-------  181 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~----~~----------~---------~~-------  181 (364)
                      ...+||--|||-|.++..+|.+  .+.|.|.|--|+-..+--+..    +.          .         ..       
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~  135 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVD  135 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcC
Confidence            3568999999999999999999  999999999997665443221    00          0         00       


Q ss_pred             -----CCCCCEEEEEcCCCCCCCCC---CCeeEEEEccCh---H---HHHHHHHhccCCCcEEEEEEcC
Q psy7830         182 -----LQSKTLEFILKDARWGHAEG---GPYDVIFFGAGT---T---EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       182 -----l~~~~v~~~~~D~~~~~~~~---~~fD~Ii~~~~~---~---~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                           ....++....||..+.....   +.||+|+...-.   +   ..++.+.++||||| +.+-+|+
T Consensus       136 p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG-~WIN~GP  203 (270)
T PF07942_consen  136 PSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGG-YWINFGP  203 (270)
T ss_pred             cccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCC-EEEecCC
Confidence                 00125666677776654443   689998765332   2   34678999999999 4555555

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG3115|consensus

Probab=96.90  E-value=0.0034  Score=56.16  Aligned_cols=104  Identities=13%  Similarity=0.063  Sum_probs=69.9

Q ss_pred             CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHh-cCCC-CCCCCCEEEEEcCCCCCCCC---CCCe
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKI-SRPD-LLQSKTLEFILKDARWGHAE---GGPY  204 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~-~~~~-~l~~~~v~~~~~D~~~~~~~---~~~f  204 (364)
                      ..-.+.|||||-|.+...++..    -+.|.||--..-+..++++.. .... .-...|+.+...++....+.   .++.
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL  139 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL  139 (249)
T ss_pred             ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence            3346899999999999999988    899999999888888888766 2100 01145777777776544332   2233


Q ss_pred             eEEEEccCh--------------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         205 DVIFFGAGT--------------TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       205 D~Ii~~~~~--------------~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +.++...+-              .+++.+..-+|++||.++......
T Consensus       140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~  186 (249)
T KOG3115|consen  140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK  186 (249)
T ss_pred             ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence            333322222              235667778899999999876543

>KOG2671|consensus

Probab=96.87  E-value=0.0025  Score=61.22  Aligned_cols=118  Identities=15%  Similarity=0.056  Sum_probs=82.0

Q ss_pred             ccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHH-------HHHHHHhcCCCCCCC
Q psy7830         114 VMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNN-------SLKNIKISRPDLLQS  184 (364)
Q Consensus       114 ~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~-------a~~~~~~~~~~~l~~  184 (364)
                      +.+.+.+.-.+.....  +++|+-|+|--.|||.+....++.  .|+|.|||-.++..       .+.|+++-.   ...
T Consensus       190 TSmDAeLSli~AN~Am--v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg---~~~  264 (421)
T KOG2671|consen  190 TSMDAELSLIMANQAM--VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYG---SSS  264 (421)
T ss_pred             cccchhHHHHHhhhhc--cCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhC---Ccc
Confidence            3344444333333333  789999999999999999888888  99999999988873       345665511   111


Q ss_pred             CCEEEEEcCCCCCC-CCCCCeeEEEEccChHH---------------------------------------HHHHHHhcc
Q psy7830         185 KTLEFILKDARWGH-AEGGPYDVIFFGAGTTE---------------------------------------VSKTILSQL  224 (364)
Q Consensus       185 ~~v~~~~~D~~~~~-~~~~~fD~Ii~~~~~~~---------------------------------------l~~~l~~~L  224 (364)
                      .-+.++.+|....+ .....||.|+|+.+..-                                       ++.-..+.|
T Consensus       265 ~fldvl~~D~sn~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L  344 (421)
T KOG2671|consen  265 QFLDVLTADFSNPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRL  344 (421)
T ss_pred             hhhheeeecccCcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhh
Confidence            23677888876543 33468999999877521                                       345667889


Q ss_pred             CCCcEEEEEEcC
Q psy7830         225 KPNGRIVAPVGN  236 (364)
Q Consensus       225 kpGG~Lvi~~~~  236 (364)
                      ..||++++=.+.
T Consensus       345 ~~ggrlv~w~p~  356 (421)
T KOG2671|consen  345 VDGGRLVFWLPT  356 (421)
T ss_pred             hcCceEEEecCc
Confidence            999999986653

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.85  E-value=0.011  Score=54.73  Aligned_cols=109  Identities=13%  Similarity=0.121  Sum_probs=73.2

Q ss_pred             HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      ...+.+.+..++.+..+|+|||||-=-++..+...    .++|+|||..+++....-+..     ++ .+.++...|...
T Consensus        92 Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~-----l~-~~~~~~v~Dl~~  165 (251)
T PF07091_consen   92 LDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAV-----LG-VPHDARVRDLLS  165 (251)
T ss_dssp             HHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHH-----TT--CEEEEEE-TTT
T ss_pred             HHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHh-----hC-CCcceeEeeeec
Confidence            45666777666677899999999999898877665    999999999999999988776     32 377888889876


Q ss_pred             CCCCCCCeeEEEEccChHHHH-------HHHHhccCCCcEEEEEEcCC
Q psy7830         197 GHAEGGPYDVIFFGAGTTEVS-------KTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       197 ~~~~~~~fD~Ii~~~~~~~l~-------~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ..+ ....|+.+.--.++-+-       -++.+.++ .=.+++|.+..
T Consensus       166 ~~~-~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~-~~~~vVSfPtr  211 (251)
T PF07091_consen  166 DPP-KEPADLALLLKTLPCLERQRRGAGLELLDALR-SPHVVVSFPTR  211 (251)
T ss_dssp             SHT-TSEESEEEEET-HHHHHHHSTTHHHHHHHHSC-ESEEEEEEES-
T ss_pred             cCC-CCCcchhhHHHHHHHHHHHhcchHHHHHHHhC-CCeEEEecccc
Confidence            644 35799999877665432       23333333 22566666653

>KOG2352|consensus

Probab=96.84  E-value=0.0075  Score=60.60  Aligned_cols=99  Identities=10%  Similarity=0.090  Sum_probs=77.6

Q ss_pred             cCCCCC-EEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeE
Q psy7830         131 HLQNGS-RVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDV  206 (364)
Q Consensus       131 ~l~~g~-~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~  206 (364)
                      ++.+-. ++|-+|||.--++..+-+-   .|+.+|+|+..++.......+      ..+-..+...|+....+++++||+
T Consensus        44 ~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~------~~~~~~~~~~d~~~l~fedESFdi  117 (482)
T KOG2352|consen   44 YLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK------ERPEMQMVEMDMDQLVFEDESFDI  117 (482)
T ss_pred             hhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc------CCcceEEEEecchhccCCCcceeE
Confidence            345666 9999999999888887766   999999999999888765433      124688999999998888899999


Q ss_pred             EEEccChHH----------------HHHHHHhccCCCcEEEEEEc
Q psy7830         207 IFFGAGTTE----------------VSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       207 Ii~~~~~~~----------------l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      |+.-+.+++                .+.++.+++++||+.+..+.
T Consensus       118 VIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl  162 (482)
T KOG2352|consen  118 VIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL  162 (482)
T ss_pred             EEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence            986554432                34688999999999665444

>KOG3178|consensus

Probab=96.84  E-value=0.0046  Score=59.72  Aligned_cols=88  Identities=15%  Similarity=0.101  Sum_probs=70.3

Q ss_pred             CEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccCh
Q psy7830         136 SRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGT  213 (364)
Q Consensus       136 ~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~  213 (364)
                      ...+|+|.|.|..+..+...  +|-+++.+...+..++.++.         +.|+.+.+|+....+   +-|+|+.--.+
T Consensus       179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~---------~gV~~v~gdmfq~~P---~~daI~mkWiL  246 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA---------PGVEHVAGDMFQDTP---KGDAIWMKWIL  246 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc---------CCcceecccccccCC---CcCeEEEEeec
Confidence            67899999999999777767  89999999988888777652         358888899876643   34688765444


Q ss_pred             H--------HHHHHHHhccCCCcEEEEEEc
Q psy7830         214 T--------EVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       214 ~--------~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      +        .+++++++.|+|||.+++...
T Consensus       247 hdwtDedcvkiLknC~~sL~~~GkIiv~E~  276 (342)
T KOG3178|consen  247 HDWTDEDCVKILKNCKKSLPPGGKIIVVEN  276 (342)
T ss_pred             ccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence            3        478999999999999998775

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.76  E-value=0.012  Score=57.67  Aligned_cols=96  Identities=23%  Similarity=0.240  Sum_probs=66.8

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc-CCC-C--CCCCCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK-DAR-W--GHAEGG  202 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~-D~~-~--~~~~~~  202 (364)
                      ..++.+|+-+|||+ |.++..+++.    +|+++|.++..++.|++....        ..+..... +.. .  ......
T Consensus       166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~--------~~~~~~~~~~~~~~~~~~t~g~  237 (350)
T COG1063         166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA--------DVVVNPSEDDAGAEILELTGGR  237 (350)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC--------eEeecCccccHHHHHHHHhCCC
Confidence            34555999999998 7777777776    999999999999999885422        11111111 110 0  011123


Q ss_pred             CeeEEEEccChHHHHHHHHhccCCCcEEEEEEc
Q psy7830         203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      .+|+++-.......+..+.+.+++||.+++.-.
T Consensus       238 g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv  270 (350)
T COG1063         238 GADVVIEAVGSPPALDQALEALRPGGTVVVVGV  270 (350)
T ss_pred             CCCEEEECCCCHHHHHHHHHHhcCCCEEEEEec
Confidence            699999877777788999999999999887443

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=96.73  E-value=0.02  Score=53.71  Aligned_cols=110  Identities=16%  Similarity=0.126  Sum_probs=65.8

Q ss_pred             HHHHHHHHHhccCC-CCCEEEEECCCcc--HHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC--EEE
Q psy7830         120 YIARCLEQLVDHLQ-NGSRVLDIGSGQG--YMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT--LEF  189 (364)
Q Consensus       120 ~~a~~l~~L~~~l~-~g~~VLDiGcGsG--~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~--v~~  189 (364)
                      ...+..++|..  . .=...||||||--  ..+-.+++.     +|+-+|++|-.+..++..+..+       ++  ..+
T Consensus        55 Fl~RaVr~la~--~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~-------~~g~t~~  125 (267)
T PF04672_consen   55 FLRRAVRYLAE--EAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN-------PRGRTAY  125 (267)
T ss_dssp             HHHHHHHHHHC--TT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT--------TTSEEEE
T ss_pred             HHHHHHHHHHH--hcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC-------CCccEEE
Confidence            44666777662  3 2357999999943  344445444     9999999999999999988663       34  889


Q ss_pred             EEcCCCCCC---C---CCCCee-----EEEEccChHH---------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830         190 ILKDARWGH---A---EGGPYD-----VIFFGAGTTE---------VSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       190 ~~~D~~~~~---~---~~~~fD-----~Ii~~~~~~~---------l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      +.+|+.+..   .   -.+-+|     .|+....+++         +...+++.|.||.+|+++-....
T Consensus       126 v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d  194 (267)
T PF04672_consen  126 VQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD  194 (267)
T ss_dssp             EE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred             EeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence            999987521   0   001122     3445555543         67899999999999999987654

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=96.72  E-value=0.0078  Score=51.04  Aligned_cols=79  Identities=22%  Similarity=0.257  Sum_probs=54.7

Q ss_pred             eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC--CCCCeeEEEEccCh-H--------------HHHH
Q psy7830         156 SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA--EGGPYDVIFFGAGT-T--------------EVSK  218 (364)
Q Consensus       156 ~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~--~~~~fD~Ii~~~~~-~--------------~l~~  218 (364)
                      +|+|+||.+++++.++++++...   + ..+++++...=..+..  +.+++|.++.|..+ +              ..++
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~---~-~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~   76 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAG---L-EDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALE   76 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-----GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcC---C-CCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence            69999999999999999999832   1 2479998876443321  12479999988654 1              1467


Q ss_pred             HHHhccCCCcEEEEEEcCCC
Q psy7830         219 TILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       219 ~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      .+.++|+|||++++.+-...
T Consensus        77 ~al~lL~~gG~i~iv~Y~GH   96 (140)
T PF06962_consen   77 AALELLKPGGIITIVVYPGH   96 (140)
T ss_dssp             HHHHHEEEEEEEEEEE--ST
T ss_pred             HHHHhhccCCEEEEEEeCCC
Confidence            88999999999999886644

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG1562|consensus

Probab=96.66  E-value=0.0054  Score=57.88  Aligned_cols=101  Identities=17%  Similarity=0.218  Sum_probs=77.9

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHh--cCCCCCCCCCEEEEEcCCCCCCCC--CCCe
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKI--SRPDLLQSKTLEFILKDARWGHAE--GGPY  204 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~--~~~~~l~~~~v~~~~~D~~~~~~~--~~~f  204 (364)
                      ...++||-||-|.|......++.    .+.-+|++...++..++-+..  ..   ...++|.+..||...+...  .++|
T Consensus       120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~g---y~~~~v~l~iGDG~~fl~~~~~~~~  196 (337)
T KOG1562|consen  120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACG---YEGKKVKLLIGDGFLFLEDLKENPF  196 (337)
T ss_pred             CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcc---cCCCceEEEeccHHHHHHHhccCCc
Confidence            34568999999999988777766    899999999999999987766  22   3446899999998654322  4789


Q ss_pred             eEEEEccChH----------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         205 DVIFFGAGTT----------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       205 D~Ii~~~~~~----------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      |+|+....-.          .....+.+.||+||+++.....
T Consensus       197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec  238 (337)
T KOG1562|consen  197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC  238 (337)
T ss_pred             eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence            9999764421          2457889999999999886644

>KOG0024|consensus

Probab=96.63  E-value=0.0098  Score=56.91  Aligned_cols=95  Identities=18%  Similarity=0.164  Sum_probs=68.6

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC-----CCC---C
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA-----RWG---H  198 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~-----~~~---~  198 (364)
                      +++|.+||-+|+|+ |..+...|+.    +|+.+|+++..++.|++ +..        ..+.......     .+.   .
T Consensus       167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga--------~~~~~~~~~~~~~~~~~~v~~~  237 (354)
T KOG0024|consen  167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGA--------TVTDPSSHKSSPQELAELVEKA  237 (354)
T ss_pred             cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCC--------eEEeeccccccHHHHHHHHHhh
Confidence            68999999999997 7777777766    99999999999999998 433        2222111111     010   1


Q ss_pred             CCCCCeeEEEEccChHHHHHHHHhccCCCcEEEEEEc
Q psy7830         199 AEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       199 ~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      .....+|+.+-....+-..+.....++.||.+++...
T Consensus       238 ~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~  274 (354)
T KOG0024|consen  238 LGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVGM  274 (354)
T ss_pred             ccccCCCeEEEccCchHHHHHHHHHhccCCEEEEecc
Confidence            1123599999888888888889999999999665443

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=96.58  E-value=0.0048  Score=55.94  Aligned_cols=96  Identities=19%  Similarity=0.098  Sum_probs=64.2

Q ss_pred             HHHHHHHhccCC------CCCEEEEECCCccHHHHHHHcc-eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC
Q psy7830         122 ARCLEQLVDHLQ------NGSRVLDIGSGQGYMATAKEWL-SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA  194 (364)
Q Consensus       122 a~~l~~L~~~l~------~g~~VLDiGcGsG~~a~~la~~-~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~  194 (364)
                      ..+++||.+...      ...++|||||=+......-... .|+.||+.++                    .-.+.+.|.
T Consensus        33 K~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~fdvt~IDLns~--------------------~~~I~qqDF   92 (219)
T PF11968_consen   33 KWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGWFDVTRIDLNSQ--------------------HPGILQQDF   92 (219)
T ss_pred             HHHHHHhhhhccccccccccceEEeecccCCCCcccccCceeeEEeecCCC--------------------CCCceeecc
Confidence            445666654322      1258999999877766554444 9999999752                    122355666


Q ss_pred             CCCCC---CCCCeeEEEEccChH---------HHHHHHHhccCCCcE-----EEEEEcCC
Q psy7830         195 RWGHA---EGGPYDVIFFGAGTT---------EVSKTILSQLKPNGR-----IVAPVGNV  237 (364)
Q Consensus       195 ~~~~~---~~~~fD~Ii~~~~~~---------~l~~~l~~~LkpGG~-----Lvi~~~~~  237 (364)
                      .+.+.   +.+.||+|.+..++.         .++..+.+.|+|+|.     |++..+.+
T Consensus        93 m~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~  152 (219)
T PF11968_consen   93 MERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP  152 (219)
T ss_pred             ccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch
Confidence            55432   246899997765553         377899999999999     77766553

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=96.58  E-value=0.0071  Score=53.82  Aligned_cols=99  Identities=19%  Similarity=0.147  Sum_probs=59.0

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHH----HHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCC
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPET----LNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGG  202 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~----l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~  202 (364)
                      +++|++|+|+=.|.|++|..++..     .|+++=..+..    ....+.+.....   -...|++.+-.+...+.. ..
T Consensus        46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e---~~~aN~e~~~~~~~A~~~-pq  121 (238)
T COG4798          46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAARE---PVYANVEVIGKPLVALGA-PQ  121 (238)
T ss_pred             cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhh---hhhhhhhhhCCcccccCC-CC
Confidence            689999999999999999999887     77776443321    111111110000   012355555544444332 23


Q ss_pred             CeeEEEEccChH-------------HHHHHHHhccCCCcEEEEEE
Q psy7830         203 PYDVIFFGAGTT-------------EVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       203 ~fD~Ii~~~~~~-------------~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ..|+++.+...+             .+...+.+.|||||++++..
T Consensus       122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d  166 (238)
T COG4798         122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED  166 (238)
T ss_pred             cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence            455555433332             25578999999999998755

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.54  E-value=0.007  Score=54.59  Aligned_cols=54  Identities=28%  Similarity=0.241  Sum_probs=42.8

Q ss_pred             ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHH
Q psy7830         116 EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLK  172 (364)
Q Consensus       116 s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~  172 (364)
                      -...++.+++....   .+|+.|||.-||||..+.++.++  +.+|+|+++..++.|++
T Consensus       176 kP~~l~~~lI~~~t---~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  176 KPVELIERLIKAST---NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             S-HHHHHHHHHHHS----TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhh---ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence            34567777777654   78999999999999999888888  99999999999999875

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK11524 putative methyltransferase; Provisional

Probab=96.44  E-value=0.0091  Score=56.82  Aligned_cols=55  Identities=15%  Similarity=0.129  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHh
Q psy7830         119 SYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKI  176 (364)
Q Consensus       119 ~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~  176 (364)
                      .+..+++....   .+|+.|||.-||||..+.++.++  +.+|+|++++.++.|++++..
T Consensus       196 ~L~erlI~~~S---~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        196 ALLKRIILASS---NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHHhC---CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence            45555555543   79999999999999999888887  999999999999999999864

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=96.37  E-value=0.0095  Score=56.45  Aligned_cols=68  Identities=16%  Similarity=0.013  Sum_probs=52.9

Q ss_pred             EEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC--CCCeeEEEEcc
Q psy7830         137 RVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE--GGPYDVIFFGA  211 (364)
Q Consensus       137 ~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~--~~~fD~Ii~~~  211 (364)
                      +|+|+.||.|.++..+...   .|.++|+++.+++..+.|...          . ++.+|+......  ...+|+|+...
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~----------~-~~~~Di~~~~~~~~~~~~D~l~~gp   70 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN----------K-LIEGDITKIDEKDFIPDIDLLTGGF   70 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC----------C-CccCccccCchhhcCCCCCEEEeCC
Confidence            6999999999998877766   788999999999988887632          1 455666654432  25699999998


Q ss_pred             ChHH
Q psy7830         212 GTTE  215 (364)
Q Consensus       212 ~~~~  215 (364)
                      +|+.
T Consensus        71 PCq~   74 (275)
T cd00315          71 PCQP   74 (275)
T ss_pred             CChh
Confidence            8864

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.20  E-value=0.019  Score=52.99  Aligned_cols=84  Identities=25%  Similarity=0.259  Sum_probs=50.5

Q ss_pred             CCCCC--EEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHh--cCCCCC--CCCCEEEEEcCCCCCCC-CCC
Q psy7830         132 LQNGS--RVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKI--SRPDLL--QSKTLEFILKDARWGHA-EGG  202 (364)
Q Consensus       132 l~~g~--~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~--~~~~~l--~~~~v~~~~~D~~~~~~-~~~  202 (364)
                      +++|.  +|||.-+|-|.-+..++..  +|+++|.||-+....+.-+.+  ...+..  -..+++++.+|..+... .+.
T Consensus        71 lk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~  150 (234)
T PF04445_consen   71 LKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDN  150 (234)
T ss_dssp             -BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS
T ss_pred             CCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCC
Confidence            46664  8999999999999998877  999999999887776654443  110000  01379999999887554 247


Q ss_pred             CeeEEEEccChHH
Q psy7830         203 PYDVIFFGAGTTE  215 (364)
Q Consensus       203 ~fD~Ii~~~~~~~  215 (364)
                      +||+|+.+.++++
T Consensus       151 s~DVVY~DPMFp~  163 (234)
T PF04445_consen  151 SFDVVYFDPMFPE  163 (234)
T ss_dssp             --SEEEE--S---
T ss_pred             CCCEEEECCCCCC
Confidence            8999999988864

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.13  E-value=0.04  Score=49.83  Aligned_cols=111  Identities=12%  Similarity=0.101  Sum_probs=58.4

Q ss_pred             ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE
Q psy7830         116 EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL  187 (364)
Q Consensus       116 s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v  187 (364)
                      ..|.-...+-+.+-+ ++ .+.|+|+|.-.|+.++.+|..        +|+|+|++........  .+...   + .++|
T Consensus        16 q~P~Dm~~~qeli~~-~k-Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~hp---~-~~rI   87 (206)
T PF04989_consen   16 QYPQDMVAYQELIWE-LK-PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESHP---M-SPRI   87 (206)
T ss_dssp             S-HHHHHHHHHHHHH-H---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG--------TTE
T ss_pred             cCHHHHHHHHHHHHH-hC-CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--Hhhcc---c-cCce
Confidence            345444555555542 33 568999999999999877654        9999999754332211  11100   1 2589


Q ss_pred             EEEEcCCCCCC--------CCCCCeeEEEEccCh--H---HHHHHHHhccCCCcEEEEEE
Q psy7830         188 EFILKDARWGH--------AEGGPYDVIFFGAGT--T---EVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       188 ~~~~~D~~~~~--------~~~~~fD~Ii~~~~~--~---~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ++++||..+..        .......+|+-+..-  .   ..++....++++|+++|+..
T Consensus        88 ~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeD  147 (206)
T PF04989_consen   88 TFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVED  147 (206)
T ss_dssp             EEEES-SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred             EEEECCCCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence            99999976421        111234566655542  1   24566889999999998633

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.13  E-value=0.024  Score=55.01  Aligned_cols=93  Identities=25%  Similarity=0.247  Sum_probs=60.6

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEcCCCCCCCCCCCee
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILKDARWGHAEGGPYD  205 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~D~~~~~~~~~~fD  205 (364)
                      ..+|++||-.|||. |.++..+++.    +|+++|.+++.++.+++ +        +...+ .....+........+.+|
T Consensus       167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~-l--------Ga~~vi~~~~~~~~~~~~~~g~~D  237 (343)
T PRK09880        167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE-M--------GADKLVNPQNDDLDHYKAEKGYFD  237 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH-c--------CCcEEecCCcccHHHHhccCCCCC
Confidence            35789999999864 5556666665    68999999999888875 2        11111 111111111111123599


Q ss_pred             EEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         206 VIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       206 ~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +|+-............+.|++||++++.
T Consensus       238 ~vid~~G~~~~~~~~~~~l~~~G~iv~~  265 (343)
T PRK09880        238 VSFEVSGHPSSINTCLEVTRAKGVMVQV  265 (343)
T ss_pred             EEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            9997766556677888999999998864

>KOG4058|consensus

Probab=96.08  E-value=0.025  Score=48.20  Aligned_cols=106  Identities=23%  Similarity=0.194  Sum_probs=70.1

Q ss_pred             HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830         121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG  197 (364)
Q Consensus       121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~  197 (364)
                      ++..+..+.  -++..+.+|+|+|.|....+.++.   ..+|+|++|..+..++-..-+..   ++ +..+|..-|....
T Consensus        61 v~nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g---~~-k~trf~RkdlwK~  134 (199)
T KOG4058|consen   61 VENVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAG---CA-KSTRFRRKDLWKV  134 (199)
T ss_pred             HHHHHHHcc--CCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHh---cc-cchhhhhhhhhhc
Confidence            345566555  245568999999999999888877   88999999999999987765511   22 4677888787655


Q ss_pred             CCCCCCeeEEEE-ccChHHHHHHHHhccCCCcEEEE
Q psy7830         198 HAEGGPYDVIFF-GAGTTEVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       198 ~~~~~~fD~Ii~-~~~~~~l~~~l~~~LkpGG~Lvi  232 (364)
                      ...+-.+-+|+- -..++.+-..+..-+..|-+++.
T Consensus       135 dl~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vva  170 (199)
T KOG4058|consen  135 DLRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVA  170 (199)
T ss_pred             cccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEE
Confidence            433323333332 22334455666666777776664

>PRK13699 putative methylase; Provisional

Probab=95.98  E-value=0.025  Score=52.05  Aligned_cols=55  Identities=16%  Similarity=0.127  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHh
Q psy7830         119 SYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKI  176 (364)
Q Consensus       119 ~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~  176 (364)
                      .+...+++..   -.+|+.|||.-||||..+.+..+.  +.+|+|++++..+.+.+++..
T Consensus       151 ~l~~~~i~~~---s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~  207 (227)
T PRK13699        151 TSLQPLIESF---THPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA  207 (227)
T ss_pred             HHHHHHHHHh---CCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence            3444444433   478999999999999999888877  999999999999999998876

>PHA01634 hypothetical protein

Probab=95.96  E-value=0.04  Score=45.84  Aligned_cols=44  Identities=9%  Similarity=-0.176  Sum_probs=40.1

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHh
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKI  176 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~  176 (364)
                      -.+.+|+|||++.|..++.++..   +|+++|.++...+..+++++.
T Consensus        27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~   73 (156)
T PHA01634         27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAY   73 (156)
T ss_pred             ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhh
Confidence            46889999999999999988877   999999999999999998876

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.92  E-value=0.051  Score=52.99  Aligned_cols=124  Identities=19%  Similarity=0.168  Sum_probs=87.7

Q ss_pred             ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHH
Q psy7830         100 FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIK  175 (364)
Q Consensus       100 ~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~  175 (364)
                      ..|.++.+.+...-+       -.++..+.+  .-..+|+|.=||+|.=++..+..    +|+.-|++|.+++.+++|+.
T Consensus        27 pVFYNP~m~~NRDls-------V~~l~~~~~--~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~   97 (380)
T COG1867          27 PVFYNPAMEFNRDLS-------VLVLKAFGK--LLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVR   97 (380)
T ss_pred             cceeCchhhhccchh-------HHHHHHhhc--cCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHH
Confidence            356666666665532       233444432  11678999999999999888876    79999999999999999998


Q ss_pred             hcCCCCCCCCCEEEEEcCCCCCCCC-CCCeeEEEEccC--hHHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         176 ISRPDLLQSKTLEFILKDARWGHAE-GGPYDVIFFGAG--TTEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       176 ~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD~Ii~~~~--~~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      .|.     ..+...+..|+..+... ...||+|=.+.-  .--+++...+.++.||.|.++..+.
T Consensus        98 ~N~-----~~~~~v~n~DAN~lm~~~~~~fd~IDiDPFGSPaPFlDaA~~s~~~~G~l~vTATD~  157 (380)
T COG1867          98 LNS-----GEDAEVINKDANALLHELHRAFDVIDIDPFGSPAPFLDAALRSVRRGGLLCVTATDT  157 (380)
T ss_pred             hcC-----cccceeecchHHHHHHhcCCCccEEecCCCCCCchHHHHHHHHhhcCCEEEEEeccc
Confidence            852     23566666887665443 367999855421  1235667778888899999987654

>cd08230 glucose_DH Glucose dehydrogenase

Probab=95.84  E-value=0.039  Score=53.80  Aligned_cols=92  Identities=20%  Similarity=0.166  Sum_probs=59.0

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeC---CHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCe
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLL---LPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPY  204 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDi---s~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~f  204 (364)
                      .++|.+||-+|+|. |.++..+++.   +|++++.   ++...+.+++         ++...+.....|..+ ......+
T Consensus       170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~---------~Ga~~v~~~~~~~~~-~~~~~~~  239 (355)
T cd08230         170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE---------LGATYVNSSKTPVAE-VKLVGEF  239 (355)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH---------cCCEEecCCccchhh-hhhcCCC
Confidence            35789999999875 5666666666   8888886   6777776654         221111111111111 0112469


Q ss_pred             eEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         205 DVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       205 D~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      |+|+-............+.|++||++++.
T Consensus       240 d~vid~~g~~~~~~~~~~~l~~~G~~v~~  268 (355)
T cd08230         240 DLIIEATGVPPLAFEALPALAPNGVVILF  268 (355)
T ss_pred             CEEEECcCCHHHHHHHHHHccCCcEEEEE
Confidence            99997776666778889999999998753

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>KOG0822|consensus

Probab=95.58  E-value=0.039  Score=55.93  Aligned_cols=94  Identities=17%  Similarity=0.135  Sum_probs=69.4

Q ss_pred             CEEEEECCCccHHHHHHHcc--------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         136 SRVLDIGSGQGYMATAKEWL--------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       136 ~~VLDiGcGsG~~a~~la~~--------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      ..|+-+|+|-|-+..+..+.        +++++|.+|.++-..+..--+..     ..+|+++..|++.+.++..+.|++
T Consensus       369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W-----~~~Vtii~~DMR~w~ap~eq~DI~  443 (649)
T KOG0822|consen  369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECW-----DNRVTIISSDMRKWNAPREQADII  443 (649)
T ss_pred             EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhh-----cCeeEEEeccccccCCchhhccch
Confidence            35788999999877554433        89999999999887766332211     258999999999887545789998


Q ss_pred             EE--------ccChHHHHHHHHhccCCCcEEEEEE
Q psy7830         208 FF--------GAGTTEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       208 i~--------~~~~~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ++        |-.-++.+..+.+.|||+|+-+=+.
T Consensus       444 VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP~s  478 (649)
T KOG0822|consen  444 VSELLGSFGDNELSPECLDGAQKFLKPDGISIPSS  478 (649)
T ss_pred             HHHhhccccCccCCHHHHHHHHhhcCCCceEccch
Confidence            75        2233567888999999998766433

>KOG3201|consensus

Probab=95.47  E-value=0.013  Score=50.62  Aligned_cols=103  Identities=19%  Similarity=0.129  Sum_probs=65.5

Q ss_pred             CCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC--CCCCCCeeE
Q psy7830         134 NGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG--HAEGGPYDV  206 (364)
Q Consensus       134 ~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~--~~~~~~fD~  206 (364)
                      .|.+|||+|.|- |..++.+|..    .|...|-++..++..++....|..  .+.....+...+....  ..+...||+
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~--s~~tsc~vlrw~~~~aqsq~eq~tFDi  106 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMA--SSLTSCCVLRWLIWGAQSQQEQHTFDI  106 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccc--cccceehhhHHHHhhhHHHHhhCcccE
Confidence            578999999985 4444555554    899999999999888876554320  0112232222222111  122358999


Q ss_pred             EEEccCh------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         207 IFFGAGT------TEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       207 Ii~~~~~------~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      |++...+      ..+.+.+..+|+|.|.-++..+.++
T Consensus       107 IlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg  144 (201)
T KOG3201|consen  107 ILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRG  144 (201)
T ss_pred             EEeccchhHHHHHHHHHHHHHHHhCcccceeEecCccc
Confidence            9875432      2477899999999999776665544

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.37  E-value=0.065  Score=49.08  Aligned_cols=99  Identities=17%  Similarity=0.206  Sum_probs=61.6

Q ss_pred             HHHHHHHHHhc----cCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830         120 YIARCLEQLVD----HLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL  191 (364)
Q Consensus       120 ~~a~~l~~L~~----~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~  191 (364)
                      .+..+.++|..    ...++-++||||.|.-.+=-.+...    +.+|.|+|+..++.|+.++..|..  + ...|++..
T Consensus        60 Yih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~--l-~~~I~lr~  136 (292)
T COG3129          60 YIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPG--L-ERAIRLRR  136 (292)
T ss_pred             HHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcc--h-hhheeEEe
Confidence            44555555542    1235668899998864433233322    899999999999999999877420  1 12455544


Q ss_pred             c-CCCC---C-CCCCCCeeEEEEccChHHHHHHHH
Q psy7830         192 K-DARW---G-HAEGGPYDVIFFGAGTTEVSKTIL  221 (364)
Q Consensus       192 ~-D~~~---~-~~~~~~fD~Ii~~~~~~~l~~~l~  221 (364)
                      . |-..   . .-..+.||+++||.+++.-.+...
T Consensus       137 qk~~~~if~giig~nE~yd~tlCNPPFh~s~~da~  171 (292)
T COG3129         137 QKDSDAIFNGIIGKNERYDATLCNPPFHDSAADAR  171 (292)
T ss_pred             ccCccccccccccccceeeeEecCCCcchhHHHHH
Confidence            3 2211   1 112468999999999987554443

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=95.29  E-value=0.11  Score=49.48  Aligned_cols=93  Identities=28%  Similarity=0.304  Sum_probs=61.2

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC-C--CCCCCCCe
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR-W--GHAEGGPY  204 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~-~--~~~~~~~f  204 (364)
                      +.++.+||..|+|. |..++.+++.   +|++++.+++..+.+++.         +...+-....+.. .  .......+
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~---------g~~~~~~~~~~~~~~~~~~~~~~~~  233 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKEL---------GADEVLNSLDDSPKDKKAAGLGGGF  233 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---------CCCEEEcCCCcCHHHHHHHhcCCCc
Confidence            67889999988763 6777777776   899999999888777542         1111110000000 0  01123569


Q ss_pred             eEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         205 DVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       205 D~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      |+|+...........+.+.|+++|+++..
T Consensus       234 D~vid~~g~~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         234 DVIFDFVGTQPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             eEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            99987665566788889999999998864

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.22  E-value=0.1  Score=53.71  Aligned_cols=94  Identities=21%  Similarity=0.226  Sum_probs=62.3

Q ss_pred             CCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC--------CCCC--
Q psy7830         133 QNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA--------RWGH--  198 (364)
Q Consensus       133 ~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~--------~~~~--  198 (364)
                      .++.+|+-+|||. |..++..++.   .|+++|.+++.++.+++ +        |...+.+...+.        ....  
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes-l--------GA~~v~i~~~e~~~~~~gya~~~s~~  233 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES-M--------GAEFLELDFEEEGGSGDGYAKVMSEE  233 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c--------CCeEEEeccccccccccchhhhcchh
Confidence            4789999999997 6666666666   99999999999998876 2        111111111000        0000  


Q ss_pred             ---------CC-CCCeeEEEEccChH-----HH-HHHHHhccCCCcEEEEEEc
Q psy7830         199 ---------AE-GGPYDVIFFGAGTT-----EV-SKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       199 ---------~~-~~~fD~Ii~~~~~~-----~l-~~~l~~~LkpGG~Lvi~~~  235 (364)
                               .+ ...+|+|+.....+     .+ .+++.+.+||||+++..-.
T Consensus       234 ~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        234 FIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence                     00 13589999876542     34 5899999999999886544

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=94.98  E-value=0.14  Score=50.59  Aligned_cols=95  Identities=19%  Similarity=0.241  Sum_probs=62.6

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC-CCC---CCCCCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD-ARW---GHAEGG  202 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D-~~~---~~~~~~  202 (364)
                      +.++.+||.+|||+ |..+..+++.    +|+++|.+++..+.+++...        ...+.....+ ...   ......
T Consensus       182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~--------~~vi~~~~~~~~~~~l~~~~~~~  253 (386)
T cd08283         182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG--------AETINFEEVDDVVEALRELTGGR  253 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC--------cEEEcCCcchHHHHHHHHHcCCC
Confidence            67899999999988 8888888777    59999999999888876421        1111111111 100   011123


Q ss_pred             CeeEEEEccCh---------------------HHHHHHHHhccCCCcEEEEEE
Q psy7830         203 PYDVIFFGAGT---------------------TEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       203 ~fD~Ii~~~~~---------------------~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      .+|+|+-...-                     ......+.+.++++|+++..-
T Consensus       254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence            68988764321                     235678889999999998753

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.92  E-value=0.081  Score=51.26  Aligned_cols=98  Identities=16%  Similarity=0.114  Sum_probs=59.1

Q ss_pred             CCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEE----EEcCCCCCCCCCCCee
Q psy7830         135 GSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEF----ILKDARWGHAEGGPYD  205 (364)
Q Consensus       135 g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~----~~~D~~~~~~~~~~fD  205 (364)
                      ..+|||+|.|+|.-..++-..     .++.++.|+..-+.... +..|.    .......    ++.|-..++. ...|+
T Consensus       114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~t-l~~nv----~t~~td~r~s~vt~dRl~lp~-ad~yt  187 (484)
T COG5459         114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDT-LAENV----STEKTDWRASDVTEDRLSLPA-ADLYT  187 (484)
T ss_pred             cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHH-HHhhc----ccccCCCCCCccchhccCCCc-cceee
Confidence            457999999999877666554     78888988876554433 22211    1111111    2222222222 34688


Q ss_pred             EEEEcc-Ch--------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         206 VIFFGA-GT--------TEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       206 ~Ii~~~-~~--------~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      ++++.. .+        +..++.+..++.|||.||+......
T Consensus       188 l~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp  229 (484)
T COG5459         188 LAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP  229 (484)
T ss_pred             hhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence            776432 22        2367889999999999998775543

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=94.89  E-value=0.27  Score=47.54  Aligned_cols=87  Identities=15%  Similarity=0.048  Sum_probs=57.1

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      +++|++||-.|+|. |..+..+++.   +|++++.+++..+.+++.         +.+.+  +  |....  ..+.+|++
T Consensus       163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~---------Ga~~v--i--~~~~~--~~~~~d~~  227 (329)
T TIGR02822       163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL---------GAASA--G--GAYDT--PPEPLDAA  227 (329)
T ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh---------CCcee--c--ccccc--CcccceEE
Confidence            67899999999753 4444555555   899999999888777652         22211  1  11111  12358877


Q ss_pred             EEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         208 FFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       208 i~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +.............+.|++||++++.
T Consensus       228 i~~~~~~~~~~~~~~~l~~~G~~v~~  253 (329)
T TIGR02822       228 ILFAPAGGLVPPALEALDRGGVLAVA  253 (329)
T ss_pred             EECCCcHHHHHHHHHhhCCCcEEEEE
Confidence            65444455677888999999999763

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=94.82  E-value=0.14  Score=49.72  Aligned_cols=86  Identities=19%  Similarity=0.176  Sum_probs=56.6

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCee
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYD  205 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD  205 (364)
                      +++|++||-+|||. |.++..+++.     +|+++|.+++.++.+++ +..          . ....+.    .+...+|
T Consensus       161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~----------~-~~~~~~----~~~~g~d  224 (341)
T cd08237         161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE----------T-YLIDDI----PEDLAVD  224 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc----------e-eehhhh----hhccCCc
Confidence            46899999999875 4444454432     79999999988888764 211          1 111111    1122489


Q ss_pred             EEEEccC---hHHHHHHHHhccCCCcEEEEE
Q psy7830         206 VIFFGAG---TTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       206 ~Ii~~~~---~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +|+-...   ....+....+.|++||++++.
T Consensus       225 ~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~  255 (341)
T cd08237         225 HAFECVGGRGSQSAINQIIDYIRPQGTIGLM  255 (341)
T ss_pred             EEEECCCCCccHHHHHHHHHhCcCCcEEEEE
Confidence            9986554   345677888999999998863

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=94.74  E-value=0.31  Score=50.20  Aligned_cols=122  Identities=13%  Similarity=0.065  Sum_probs=74.2

Q ss_pred             CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHc-----c---eEEEEeCCHHHHHHHHHHHHhcCCCCCC
Q psy7830         112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEW-----L---SSVRQLLLPETLNNSLKNIKISRPDLLQ  183 (364)
Q Consensus       112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~-----~---~V~~vDis~~~l~~a~~~~~~~~~~~l~  183 (364)
                      |.+-+...++..+.+.+.....++..|.|..||+|.+.....+     .   .+++.+..+.+...++.|+.-+.   ..
T Consensus       195 g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~---~~  271 (501)
T TIGR00497       195 GEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHN---ID  271 (501)
T ss_pred             ceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcC---CC
Confidence            4444444555555555542223678999999999998765432     1   79999999999999999864311   11


Q ss_pred             CCCEEEEEcCCCCCC--CCCCCeeEEEEccChHH-------------------------------HHHHHHhccCCCcEE
Q psy7830         184 SKTLEFILKDARWGH--AEGGPYDVIFFGAGTTE-------------------------------VSKTILSQLKPNGRI  230 (364)
Q Consensus       184 ~~~v~~~~~D~~~~~--~~~~~fD~Ii~~~~~~~-------------------------------l~~~l~~~LkpGG~L  230 (364)
                      .+......+|....+  ....+||.|++|.++..                               .+..+...|++||+.
T Consensus       272 ~~t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~  351 (501)
T TIGR00497       272 YANFNIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTA  351 (501)
T ss_pred             ccccCcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeE
Confidence            122333334433211  11245888887765421                               124567788999987


Q ss_pred             EEEEcC
Q psy7830         231 VAPVGN  236 (364)
Q Consensus       231 vi~~~~  236 (364)
                      .+....
T Consensus       352 aiI~~~  357 (501)
T TIGR00497       352 AIVCFP  357 (501)
T ss_pred             EEEecC
Confidence            766544

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>KOG1501|consensus

Probab=94.69  E-value=0.086  Score=52.39  Aligned_cols=52  Identities=23%  Similarity=0.284  Sum_probs=42.9

Q ss_pred             EEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830         137 RVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK  192 (364)
Q Consensus       137 ~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~  192 (364)
                      -|||||+|||.++..+++.   .|+++|.-..|.+.|++-..+|.   . .++|.++.-
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng---~-SdkI~vInk  123 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNG---M-SDKINVINK  123 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCC---C-ccceeeecc
Confidence            5899999999999888777   99999999999999999887743   2 256766654

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.66  E-value=0.12  Score=47.22  Aligned_cols=95  Identities=25%  Similarity=0.270  Sum_probs=60.3

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC-C-CCCCCCee
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW-G-HAEGGPYD  205 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~-~-~~~~~~fD  205 (364)
                      +.++.+||..|+|+ |..+..+++.   +|++++.++...+.+++.-...        -+.....+... . ......+|
T Consensus       132 ~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~d  203 (271)
T cd05188         132 LKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADH--------VIDYKEEDLEEELRLTGGGGAD  203 (271)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCce--------eccCCcCCHHHHHHHhcCCCCC
Confidence            47899999999986 5555556655   8999999988777765421100        01000001000 0 11135699


Q ss_pred             EEEEccChHHHHHHHHhccCCCcEEEEEE
Q psy7830         206 VIFFGAGTTEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       206 ~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      +|+.+.........+.+.|+++|+++...
T Consensus       204 ~vi~~~~~~~~~~~~~~~l~~~G~~v~~~  232 (271)
T cd05188         204 VVIDAVGGPETLAQALRLLRPGGRIVVVG  232 (271)
T ss_pred             EEEECCCCHHHHHHHHHhcccCCEEEEEc
Confidence            99977665466778889999999988644

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=94.65  E-value=0.042  Score=55.60  Aligned_cols=88  Identities=18%  Similarity=0.114  Sum_probs=56.1

Q ss_pred             CEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC-CCCCCCCCeeEEEE
Q psy7830         136 SRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR-WGHAEGGPYDVIFF  209 (364)
Q Consensus       136 ~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~-~~~~~~~~fD~Ii~  209 (364)
                      ..|+|+.+|.|+++++|...     .|+-+ ..+..+...-   .++.   +|     ++ -|-. .+..-..+||+|++
T Consensus       367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIy---dRGL---IG-----~y-hDWCE~fsTYPRTYDLlHA  433 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIY---DRGL---IG-----VY-HDWCEAFSTYPRTYDLLHA  433 (506)
T ss_pred             eeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhh---hccc---ch-----hc-cchhhccCCCCcchhheeh
Confidence            37999999999999999887     44444 2233332221   1221   11     12 1222 22222368999999


Q ss_pred             ccChH---------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         210 GAGTT---------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       210 ~~~~~---------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +..+.         .++-++-|.|+|||.+++....
T Consensus       434 ~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~  469 (506)
T PF03141_consen  434 DGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV  469 (506)
T ss_pred             hhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence            87764         3677899999999999986544

; GO: 0008168 methyltransferase activity

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=94.29  E-value=0.22  Score=46.77  Aligned_cols=93  Identities=24%  Similarity=0.179  Sum_probs=58.6

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC-C--CCCCCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW-G--HAEGGP  203 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~-~--~~~~~~  203 (364)
                      ..++++||-+|+|+ |.++..+++.    +|+++|.+++..+.+++.         +...+ +...+... .  ......
T Consensus       118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~---------Ga~~~-i~~~~~~~~~~~~~~~~g  187 (280)
T TIGR03366       118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF---------GATAL-AEPEVLAERQGGLQNGRG  187 (280)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc---------CCcEe-cCchhhHHHHHHHhCCCC
Confidence            35899999998764 4455555555    489999999888777652         11110 00001000 0  011235


Q ss_pred             eeEEEEccChHHHHHHHHhccCCCcEEEEEE
Q psy7830         204 YDVIFFGAGTTEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       204 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      +|+|+-............+.|+++|++++.-
T Consensus       188 ~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G  218 (280)
T TIGR03366       188 VDVALEFSGATAAVRACLESLDVGGTAVLAG  218 (280)
T ss_pred             CCEEEECCCChHHHHHHHHHhcCCCEEEEec
Confidence            8999876655667788899999999988643

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>KOG1099|consensus

Probab=94.21  E-value=0.075  Score=48.58  Aligned_cols=87  Identities=18%  Similarity=0.164  Sum_probs=62.1

Q ss_pred             CCEEEEECCCccHHHHHHHcc-------------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC---
Q psy7830         135 GSRVLDIGSGQGYMATAKEWL-------------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH---  198 (364)
Q Consensus       135 g~~VLDiGcGsG~~a~~la~~-------------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~---  198 (364)
                      -.+|.|+++.+|..+..+++.             .|++||+.+-+                ..+.|..+++|+....   
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma----------------PI~GV~qlq~DIT~~stae  105 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA----------------PIEGVIQLQGDITSASTAE  105 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC----------------ccCceEEeecccCCHhHHH
Confidence            357999999999999888875             39999986432                1356888889987531   


Q ss_pred             -----CCCCCeeEEEEccCh-----HH------------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         199 -----AEGGPYDVIFFGAGT-----TE------------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       199 -----~~~~~fD~Ii~~~~~-----~~------------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                           +..++.|+|+++++-     |.            .+.....+|||||.+|.-+...
T Consensus       106 ~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg  166 (294)
T KOG1099|consen  106 AIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRG  166 (294)
T ss_pred             HHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhcc
Confidence                 234589999998664     21            1234457899999999766443

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=94.18  E-value=0.26  Score=47.09  Aligned_cols=83  Identities=18%  Similarity=0.191  Sum_probs=56.7

Q ss_pred             CCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         133 QNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       133 ~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      .++++||-+|||. |.++..+++.    .|+++|.++..++.+....           -+     |....  ....+|+|
T Consensus       143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~-----------~i-----~~~~~--~~~g~Dvv  204 (308)
T TIGR01202       143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE-----------VL-----DPEKD--PRRDYRAI  204 (308)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc-----------cc-----Chhhc--cCCCCCEE
Confidence            4678899999875 6666777765    5777898887766554310           01     10000  12468999


Q ss_pred             EEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         208 FFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       208 i~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +-.......+....+.|++||++++.
T Consensus       205 id~~G~~~~~~~~~~~l~~~G~iv~~  230 (308)
T TIGR01202       205 YDASGDPSLIDTLVRRLAKGGEIVLA  230 (308)
T ss_pred             EECCCCHHHHHHHHHhhhcCcEEEEE
Confidence            97776666778889999999999864

>KOG2360|consensus

Probab=93.81  E-value=0.13  Score=50.41  Aligned_cols=101  Identities=14%  Similarity=0.026  Sum_probs=70.4

Q ss_pred             ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHH
Q psy7830         100 FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNI  174 (364)
Q Consensus       100 ~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~  174 (364)
                      ..|....+.+++-.+-    ..+   ..|.  ..+|.+|+|.+|.+|..|.+++..     +++|+|.+....+..++.+
T Consensus       188 ~ly~~g~~ilqd~asc----lpA---~ll~--p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l  258 (413)
T KOG2360|consen  188 ELYKNGKFILQDKASC----LPA---HLLD--PRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLL  258 (413)
T ss_pred             cccccCceEEechhhc----chh---hhcC--CCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHH
Confidence            3566666666654332    222   2333  578899999999999999988876     9999999999999888887


Q ss_pred             HhcCCCCCCCCCEEEEEcCCCCCCC--CCCCeeEEEEccChH
Q psy7830         175 KISRPDLLQSKTLEFILKDARWGHA--EGGPYDVIFFGAGTT  214 (364)
Q Consensus       175 ~~~~~~~l~~~~v~~~~~D~~~~~~--~~~~fD~Ii~~~~~~  214 (364)
                      ..     .+..+++...+|+.....  .....-.|+++.+|+
T Consensus       259 ~~-----ag~~~~~~~~~df~~t~~~~~~~~v~~iL~DpscS  295 (413)
T KOG2360|consen  259 KI-----AGVSIVESVEGDFLNTATPEKFRDVTYILVDPSCS  295 (413)
T ss_pred             HH-----cCCCccccccccccCCCCcccccceeEEEeCCCCC
Confidence            76     334577777888876421  113345677776664

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=93.78  E-value=0.37  Score=48.36  Aligned_cols=85  Identities=12%  Similarity=0.055  Sum_probs=57.0

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      ..+|++|+-+|||+ |......++.   +|+.+|.++.....|++         .+.   ....  ..+.   -..+|+|
T Consensus       199 ~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~---------~G~---~~~~--~~e~---v~~aDVV  261 (413)
T cd00401         199 MIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM---------EGY---EVMT--MEEA---VKEGDIF  261 (413)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh---------cCC---EEcc--HHHH---HcCCCEE
Confidence            46899999999997 5445545544   89999999988777654         121   1111  1111   1357999


Q ss_pred             EEccChHHHHH-HHHhccCCCcEEEEE
Q psy7830         208 FFGAGTTEVSK-TILSQLKPNGRIVAP  233 (364)
Q Consensus       208 i~~~~~~~l~~-~l~~~LkpGG~Lvi~  233 (364)
                      +.......++. ...+.+|+||+++..
T Consensus       262 I~atG~~~~i~~~~l~~mk~Ggilvnv  288 (413)
T cd00401         262 VTTTGNKDIITGEHFEQMKDGAIVCNI  288 (413)
T ss_pred             EECCCCHHHHHHHHHhcCCCCcEEEEe
Confidence            87766666555 458999999988754

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=93.59  E-value=0.095  Score=50.04  Aligned_cols=67  Identities=19%  Similarity=0.135  Sum_probs=49.9

Q ss_pred             EEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCC-C-CeeEEEEcc
Q psy7830         137 RVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEG-G-PYDVIFFGA  211 (364)
Q Consensus       137 ~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~-~-~fD~Ii~~~  211 (364)
                      +++|+.||.|.++..+...   .|.++|+++.+.+.-+.|.          +  ....+|+....... . .+|+++...
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~----------~--~~~~~Di~~~~~~~l~~~~D~l~ggp   69 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANF----------P--EVICGDITEIDPSDLPKDVDLLIGGP   69 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHH----------T--EEEESHGGGCHHHHHHHT-SEEEEE-
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhcc----------c--ccccccccccccccccccceEEEecc
Confidence            7999999999999888877   8889999999998888886          2  67888887654221 2 599999988


Q ss_pred             ChHH
Q psy7830         212 GTTE  215 (364)
Q Consensus       212 ~~~~  215 (364)
                      +|+.
T Consensus        70 PCQ~   73 (335)
T PF00145_consen   70 PCQG   73 (335)
T ss_dssp             --TT
T ss_pred             CCce
Confidence            8853

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PTZ00357 methyltransferase; Provisional

Probab=93.32  E-value=0.36  Score=50.73  Aligned_cols=93  Identities=17%  Similarity=0.085  Sum_probs=61.0

Q ss_pred             EEEEECCCccHHHHHHHcc--------eEEEEeCCHHHHHHHHHHHHh--cCCC--CCCCCCEEEEEcCCCCCCCC----
Q psy7830         137 RVLDIGSGQGYMATAKEWL--------SSVRQLLLPETLNNSLKNIKI--SRPD--LLQSKTLEFILKDARWGHAE----  200 (364)
Q Consensus       137 ~VLDiGcGsG~~a~~la~~--------~V~~vDis~~~l~~a~~~~~~--~~~~--~l~~~~v~~~~~D~~~~~~~----  200 (364)
                      .|+-+|+|-|-+.....+.        +|++||.++..+.....+...  ...+  ..-...|+++..|++.+...    
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            4899999999876444333        899999997755455444322  1100  00013699999999876432    


Q ss_pred             -------CCCeeEEEE--------ccChHHHHHHHHhccCC----CcE
Q psy7830         201 -------GGPYDVIFF--------GAGTTEVSKTILSQLKP----NGR  229 (364)
Q Consensus       201 -------~~~fD~Ii~--------~~~~~~l~~~l~~~Lkp----GG~  229 (364)
                             .+++|+|++        |-..++.+..+.+.||+    +|+
T Consensus       783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence                   136999986        33345677788888886    786

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=93.25  E-value=0.63  Score=45.33  Aligned_cols=93  Identities=20%  Similarity=0.119  Sum_probs=59.0

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcCCCC-C--CCCCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKDARW-G--HAEGG  202 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D~~~-~--~~~~~  202 (364)
                      +++|++||-.|||. |..+..+++.    +|+++|.++...+.+++.         +.+. +.....|... .  .....
T Consensus       174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~---------Ga~~~i~~~~~~~~~~i~~~~~~~  244 (358)
T TIGR03451       174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF---------GATHTVNSSGTDPVEAIRALTGGF  244 (358)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc---------CCceEEcCCCcCHHHHHHHHhCCC
Confidence            67899999998764 5555666665    499999999988887542         2111 1111111100 0  01123


Q ss_pred             CeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      .+|+|+-............+.+++||++++.
T Consensus       245 g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~  275 (358)
T TIGR03451       245 GADVVIDAVGRPETYKQAFYARDLAGTVVLV  275 (358)
T ss_pred             CCCEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            5899986655555667788899999998863

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=93.25  E-value=0.33  Score=47.38  Aligned_cols=75  Identities=15%  Similarity=0.150  Sum_probs=50.9

Q ss_pred             ccCCCceecC-CCccChHHHHHH--------HHHHHhccCCC-CCEEEEECCCccHHHHHHHcc------------eEEE
Q psy7830         102 FCDIPYAFAN-QVVMEPPSYIAR--------CLEQLVDHLQN-GSRVLDIGSGQGYMATAKEWL------------SSVR  159 (364)
Q Consensus       102 y~d~~l~ig~-g~~~s~P~~~a~--------~l~~L~~~l~~-g~~VLDiGcGsG~~a~~la~~------------~V~~  159 (364)
                      |......||. |-.+++|.+...        +++.+.+.-.| .-.++|+|.|.|.++..+++.            ++..
T Consensus        35 YYs~~~~~G~~GDFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~i  114 (370)
T COG1565          35 YYSSAVKIGRKGDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYI  114 (370)
T ss_pred             ccccchhccccCCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEE
Confidence            3333455653 456677765533        33333332233 357999999999999877654            8899


Q ss_pred             EeCCHHHHHHHHHHHHh
Q psy7830         160 QLLLPETLNNSLKNIKI  176 (364)
Q Consensus       160 vDis~~~l~~a~~~~~~  176 (364)
                      ||+|+...+.=+++++.
T Consensus       115 iE~s~~L~~~Qk~~L~~  131 (370)
T COG1565         115 IEPSPELRARQKETLKA  131 (370)
T ss_pred             EecCHHHHHHHHHHHhc
Confidence            99999998888887765

>KOG1253|consensus

Probab=93.21  E-value=0.091  Score=52.99  Aligned_cols=101  Identities=15%  Similarity=0.135  Sum_probs=79.6

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC----CCC
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA----EGG  202 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~----~~~  202 (364)
                      ..++-+|||.=|++|.-++..++.     .|++-|.++..++..++|++.|.   . .+.++....|+.....    ...
T Consensus       107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~---v-~~ive~~~~DA~~lM~~~~~~~~  182 (525)
T KOG1253|consen  107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG---V-EDIVEPHHSDANVLMYEHPMVAK  182 (525)
T ss_pred             ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC---c-hhhcccccchHHHHHHhcccccc
Confidence            356788999999999999888876     99999999999999999998753   1 2356777778654321    135


Q ss_pred             CeeEEEEcc--ChHHHHHHHHhccCCCcEEEEEEcC
Q psy7830         203 PYDVIFFGA--GTTEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       203 ~fD~Ii~~~--~~~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      .||+|-.+.  ....+++...+.++.||.|.++..+
T Consensus       183 ~FDvIDLDPyGs~s~FLDsAvqav~~gGLL~vT~TD  218 (525)
T KOG1253|consen  183 FFDVIDLDPYGSPSPFLDSAVQAVRDGGLLCVTCTD  218 (525)
T ss_pred             ccceEecCCCCCccHHHHHHHHHhhcCCEEEEEecc
Confidence            799998763  3456888999999999999998755

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=93.08  E-value=0.24  Score=40.56  Aligned_cols=83  Identities=20%  Similarity=0.128  Sum_probs=57.8

Q ss_pred             CccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC------CCCCCCeeEEEEccChH
Q psy7830         144 GQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG------HAEGGPYDVIFFGAGTT  214 (364)
Q Consensus       144 GsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~------~~~~~~fD~Ii~~~~~~  214 (364)
                      |-|..+..+++.   +|+++|.++..++.+++.         +..  .++..+-.+.      ......+|+|+-.....
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~---------Ga~--~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~   69 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL---------GAD--HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSG   69 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT---------TES--EEEETTTSSHHHHHHHHTTTSSEEEEEESSSSH
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh---------ccc--ccccccccccccccccccccccceEEEEecCcH
Confidence            357788888877   999999999999888762         211  1122211110      11124799999888778


Q ss_pred             HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         215 EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       215 ~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ..++...+.|+++|++++.-...
T Consensus        70 ~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   70 DTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             HHHHHHHHHEEEEEEEEEESSTS
T ss_pred             HHHHHHHHHhccCCEEEEEEccC
Confidence            88999999999999999855443

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=93.05  E-value=0.3  Score=47.95  Aligned_cols=93  Identities=20%  Similarity=0.130  Sum_probs=59.1

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEcCCCC-CC-CCCCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILKDARW-GH-AEGGP  203 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~D~~~-~~-~~~~~  203 (364)
                      +++|++||-.|+|. |.++..+++.    +|+++|.++...+.+++.         +.+.+ .....|..+ .. ...+.
T Consensus       189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~---------Ga~~~i~~~~~~~~~~i~~~~~~g  259 (371)
T cd08281         189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL---------GATATVNAGDPNAVEQVRELTGGG  259 (371)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc---------CCceEeCCCchhHHHHHHHHhCCC
Confidence            67899999999764 4555556655    599999999988887642         11111 111111100 00 01236


Q ss_pred             eeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         204 YDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       204 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +|+|+-............+.|++||++++.
T Consensus       260 ~d~vid~~G~~~~~~~~~~~l~~~G~iv~~  289 (371)
T cd08281         260 VDYAFEMAGSVPALETAYEITRRGGTTVTA  289 (371)
T ss_pred             CCEEEECCCChHHHHHHHHHHhcCCEEEEE
Confidence            899987655556777788999999998864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=92.86  E-value=0.52  Score=46.13  Aligned_cols=92  Identities=18%  Similarity=0.211  Sum_probs=53.5

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE-cCCCCCCCCCCCeeE
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL-KDARWGHAEGGPYDV  206 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~-~D~~~~~~~~~~fD~  206 (364)
                      +++|++||-.|+|. |.++..+++.   +|++++.++.....+.+.        ++.+.  ++. .+........+.+|+
T Consensus       181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~--------~Ga~~--vi~~~~~~~~~~~~~~~D~  250 (360)
T PLN02586        181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINR--------LGADS--FLVSTDPEKMKAAIGTMDY  250 (360)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHh--------CCCcE--EEcCCCHHHHHhhcCCCCE
Confidence            46899999998864 5555666665   788888776543322222        12111  111 110000000125899


Q ss_pred             EEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         207 IFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       207 Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      |+-.......+....+.|++||+++..
T Consensus       251 vid~~g~~~~~~~~~~~l~~~G~iv~v  277 (360)
T PLN02586        251 IIDTVSAVHALGPLLGLLKVNGKLITL  277 (360)
T ss_pred             EEECCCCHHHHHHHHHHhcCCcEEEEe
Confidence            986655445667788999999998864

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=92.85  E-value=0.16  Score=49.19  Aligned_cols=67  Identities=12%  Similarity=0.027  Sum_probs=49.4

Q ss_pred             EEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC-CCCeeEEEEccCh
Q psy7830         138 VLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE-GGPYDVIFFGAGT  213 (364)
Q Consensus       138 VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD~Ii~~~~~  213 (364)
                      |+|+.||.|.++.-+.+.   .+.++|+++.+++.-+.|..          + .+..+|+.+.... ...+|+++...+|
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~----------~-~~~~~Di~~~~~~~~~~~dvl~gg~PC   69 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG----------N-KVPFGDITKISPSDIPDFDILLGGFPC   69 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC----------C-CCCccChhhhhhhhCCCcCEEEecCCC
Confidence            689999999999888766   66789999999998888752          2 3345666654321 2358999888777


Q ss_pred             HH
Q psy7830         214 TE  215 (364)
Q Consensus       214 ~~  215 (364)
                      +.
T Consensus        70 q~   71 (315)
T TIGR00675        70 QP   71 (315)
T ss_pred             cc
Confidence            53

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=92.68  E-value=0.56  Score=45.60  Aligned_cols=71  Identities=20%  Similarity=0.172  Sum_probs=53.3

Q ss_pred             CCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCC--C-CeeEEE
Q psy7830         135 GSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEG--G-PYDVIF  208 (364)
Q Consensus       135 g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~--~-~fD~Ii  208 (364)
                      ..+++|+.||.|.+..-+...   -+.++|+++.+++.-+.|...          -.+...|+.......  . .+|+|+
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~----------~~~~~~di~~~~~~~~~~~~~Dvli   72 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH----------GDIILGDIKELDGEALRKSDVDVLI   72 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC----------CceeechHhhcChhhccccCCCEEE
Confidence            458999999999999877776   788899999999988887642          334556655433211  2 789999


Q ss_pred             EccChHH
Q psy7830         209 FGAGTTE  215 (364)
Q Consensus       209 ~~~~~~~  215 (364)
                      ...+|+.
T Consensus        73 gGpPCQ~   79 (328)
T COG0270          73 GGPPCQD   79 (328)
T ss_pred             eCCCCcc
Confidence            9999875

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=92.58  E-value=0.4  Score=46.10  Aligned_cols=93  Identities=22%  Similarity=0.202  Sum_probs=57.5

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc---e-EEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcCCCCC--CCCCCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL---S-SVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKDARWG--HAEGGP  203 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~---~-V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D~~~~--~~~~~~  203 (364)
                      +.+|++||-+|+|. |.++..+++.   + |++++.+++..+.+++.         +.+. +.....+....  ......
T Consensus       161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~---------ga~~~i~~~~~~~~~~~~~~~~~~  231 (339)
T cd08239         161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL---------GADFVINSGQDDVQEIRELTSGAG  231 (339)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh---------CCCEEEcCCcchHHHHHHHhCCCC
Confidence            67899999998753 3444555555   5 99999999888777542         1111 11111110000  011236


Q ss_pred             eeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         204 YDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       204 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +|+|+-............+.|+++|++++.
T Consensus       232 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~  261 (339)
T cd08239         232 ADVAIECSGNTAARRLALEAVRPWGRLVLV  261 (339)
T ss_pred             CCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            999987665555667778899999998863

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=92.50  E-value=0.36  Score=49.71  Aligned_cols=95  Identities=19%  Similarity=0.155  Sum_probs=58.7

Q ss_pred             CCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE---cCCCC---------
Q psy7830         133 QNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL---KDARW---------  196 (364)
Q Consensus       133 ~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~---~D~~~---------  196 (364)
                      .++.+|+-+|||. |..+..+++.   .|+++|.++..++.+++ +..        ..+.+-.   ++...         
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-lGa--------~~v~v~~~e~g~~~~gYa~~~s~~  232 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-MGA--------EFLELDFKEEGGSGDGYAKVMSEE  232 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCC--------eEEeccccccccccccceeecCHH
Confidence            3578999999997 4555555555   89999999998777765 211        1111110   00000         


Q ss_pred             --------CCCCCCCeeEEEEccCh-----HH-HHHHHHhccCCCcEEE-EEEcC
Q psy7830         197 --------GHAEGGPYDVIFFGAGT-----TE-VSKTILSQLKPNGRIV-APVGN  236 (364)
Q Consensus       197 --------~~~~~~~fD~Ii~~~~~-----~~-l~~~l~~~LkpGG~Lv-i~~~~  236 (364)
                              .......+|+|+.....     +. +.+++.+.+|||+.++ +++..
T Consensus       233 ~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~  287 (511)
T TIGR00561       233 FIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQ  287 (511)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCC
Confidence                    11112469999876622     22 5678899999999988 44433

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PLN02740 Alcohol dehydrogenase-like

Probab=92.50  E-value=0.79  Score=45.19  Aligned_cols=92  Identities=21%  Similarity=0.200  Sum_probs=58.6

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEc--CCCC-CC-CCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILK--DARW-GH-AEG  201 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~--D~~~-~~-~~~  201 (364)
                      +++|++||-+|+|+ |..+..+++.    +|+++|.+++.++.+++         ++.+. +.....  +... .. ...
T Consensus       196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~---------~Ga~~~i~~~~~~~~~~~~v~~~~~  266 (381)
T PLN02740        196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE---------MGITDFINPKDSDKPVHERIREMTG  266 (381)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH---------cCCcEEEecccccchHHHHHHHHhC
Confidence            68899999999864 4555556655    59999999998888864         22111 111100  0100 00 011


Q ss_pred             CCeeEEEEccChHHHHHHHHhccCCC-cEEEE
Q psy7830         202 GPYDVIFFGAGTTEVSKTILSQLKPN-GRIVA  232 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi  232 (364)
                      +.+|+|+-............+.+++| |++++
T Consensus       267 ~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~  298 (381)
T PLN02740        267 GGVDYSFECAGNVEVLREAFLSTHDGWGLTVL  298 (381)
T ss_pred             CCCCEEEECCCChHHHHHHHHhhhcCCCEEEE
Confidence            26999987776666777888889997 98765

>KOG1227|consensus

Probab=92.42  E-value=0.058  Score=51.17  Aligned_cols=91  Identities=18%  Similarity=0.167  Sum_probs=63.4

Q ss_pred             CCCEEEEECCCccHHHH-HHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830         134 NGSRVLDIGSGQGYMAT-AKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF  209 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~-~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~  209 (364)
                      .+..|.|+-+|-||++. .+...   .|+++|.+|..++..+++++.|.   . ..+.....+|.+..-+ ....|.|..
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~---V-~~r~~i~~gd~R~~~~-~~~AdrVnL  268 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANN---V-MDRCRITEGDNRNPKP-RLRADRVNL  268 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcc---h-HHHHHhhhccccccCc-cccchheee
Confidence            56889999999999998 55444   99999999999999999998843   1 1344556677655443 456888876


Q ss_pred             ccCh--HHHHHHHHhccCCCcE
Q psy7830         210 GAGT--TEVSKTILSQLKPNGR  229 (364)
Q Consensus       210 ~~~~--~~l~~~l~~~LkpGG~  229 (364)
                      ...-  +.--....+.|||.|-
T Consensus       269 GLlPSse~~W~~A~k~Lk~egg  290 (351)
T KOG1227|consen  269 GLLPSSEQGWPTAIKALKPEGG  290 (351)
T ss_pred             ccccccccchHHHHHHhhhcCC
Confidence            5432  2222345677777443

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=92.21  E-value=1.1  Score=43.59  Aligned_cols=93  Identities=24%  Similarity=0.221  Sum_probs=57.6

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEc---CCCCC---CCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILK---DARWG---HAE  200 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~---D~~~~---~~~  200 (364)
                      +++|.+||-+|||+ |..+..+++.   +|+++|.+++.++.+++ +        +... +.....   |....   ...
T Consensus       164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~-~--------Ga~~~i~~~~~~~~~~~~~~~~~t~  234 (349)
T TIGR03201       164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG-F--------GADLTLNPKDKSAREVKKLIKAFAK  234 (349)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-h--------CCceEecCccccHHHHHHHHHhhcc
Confidence            67899999999965 6666666665   89999999998888754 2        1111 111111   11000   001


Q ss_pred             CCCee----EEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         201 GGPYD----VIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       201 ~~~fD----~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ...+|    +|+-............+.|++||++++.
T Consensus       235 ~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~  271 (349)
T TIGR03201       235 ARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVV  271 (349)
T ss_pred             cCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEE
Confidence            12344    6665554455667788899999999764

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>KOG2793|consensus

Probab=91.91  E-value=0.92  Score=42.29  Aligned_cols=99  Identities=19%  Similarity=0.122  Sum_probs=56.2

Q ss_pred             CCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCC--CCCCCCEEEEEcCCCCC---CCCCCC-e
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPD--LLQSKTLEFILKDARWG---HAEGGP-Y  204 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~--~l~~~~v~~~~~D~~~~---~~~~~~-f  204 (364)
                      ...+||++|+|+|..++.++..   .|...|+.. .+...+.|...+.-.  .++ ..+.+...+-...   ..-... |
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g-~~v~v~~L~Wg~~~~~~~~~~~~~  163 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPK-VVENLKFNRDKNNIALNQLG-GSVIVAILVWGNALDVSFRLPNPF  163 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhcceeccCCchh-hHHHHHHhhhhhhhhhhhcC-CceeEEEEecCCcccHhhccCCcc
Confidence            3567999999999888888875   777777643 333433333221100  011 1333333222111   111123 7


Q ss_pred             eEEEEccC------hHHHHHHHHhccCCCcEEEEEE
Q psy7830         205 DVIFFGAG------TTEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       205 D~Ii~~~~------~~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      |+|++..+      ++.+...++..|..+|.+++..
T Consensus       164 DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~  199 (248)
T KOG2793|consen  164 DLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAY  199 (248)
T ss_pred             cEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEE
Confidence            88876543      3567888899999988555544

>PLN02827 Alcohol dehydrogenase-like

Probab=91.83  E-value=1.2  Score=43.95  Aligned_cols=92  Identities=21%  Similarity=0.198  Sum_probs=57.0

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEc--CCCCCC--CCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILK--DARWGH--AEG  201 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~--D~~~~~--~~~  201 (364)
                      +++|++||-.|+|+ |.+++.+++.    .|+++|.++...+.+++         ++.+.+ .....  +.....  ...
T Consensus       191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~---------lGa~~~i~~~~~~~~~~~~v~~~~~  261 (378)
T PLN02827        191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT---------FGVTDFINPNDLSEPIQQVIKRMTG  261 (378)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH---------cCCcEEEcccccchHHHHHHHHHhC
Confidence            67899999998754 4444555554    58899999888777754         221111 11100  110000  011


Q ss_pred             CCeeEEEEccChHHHHHHHHhccCCC-cEEEE
Q psy7830         202 GPYDVIFFGAGTTEVSKTILSQLKPN-GRIVA  232 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi  232 (364)
                      +.+|+|+-.......+....+.+++| |++++
T Consensus       262 ~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~  293 (378)
T PLN02827        262 GGADYSFECVGDTGIATTALQSCSDGWGLTVT  293 (378)
T ss_pred             CCCCEEEECCCChHHHHHHHHhhccCCCEEEE
Confidence            26899987666555677788899998 99876

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=91.79  E-value=0.56  Score=43.70  Aligned_cols=78  Identities=14%  Similarity=0.103  Sum_probs=48.2

Q ss_pred             CEEEEECCCccHHHHHHHcc------------eEEEEeCCHHHHHHHHHHHHhcCCC-CCCCCCEEEEEcCCCCCCCCCC
Q psy7830         136 SRVLDIGSGQGYMATAKEWL------------SSVRQLLLPETLNNSLKNIKISRPD-LLQSKTLEFILKDARWGHAEGG  202 (364)
Q Consensus       136 ~~VLDiGcGsG~~a~~la~~------------~V~~vDis~~~l~~a~~~~~~~~~~-~l~~~~v~~~~~D~~~~~~~~~  202 (364)
                      -+|+|+|+|+|.++..+++.            +++.||+||.+.+.-++++.....+ .....+|.. ..+..+.+    
T Consensus        20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p----   94 (252)
T PF02636_consen   20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP----   94 (252)
T ss_dssp             EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS-----
T ss_pred             cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc----
Confidence            59999999999999887654            7999999999988888877541000 000124555 22332221    


Q ss_pred             CeeEEEEccChHHHHH
Q psy7830         203 PYDVIFFGAGTTEVSK  218 (364)
Q Consensus       203 ~fD~Ii~~~~~~~l~~  218 (364)
                      ..-+|++|-.+..++-
T Consensus        95 ~~~~iiaNE~~DAlP~  110 (252)
T PF02636_consen   95 FPGFIIANELFDALPV  110 (252)
T ss_dssp             CCEEEEEESSGGGS--
T ss_pred             CCEEEEEeeehhcCce
Confidence            3457888888777653

; PDB: 4F3N_A 1ZKD_B.

>KOG2352|consensus

Probab=91.78  E-value=0.28  Score=49.59  Aligned_cols=101  Identities=18%  Similarity=0.174  Sum_probs=71.3

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC-------CCC
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG-------HAE  200 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~-------~~~  200 (364)
                      ...+..+|-+|-|+|.+...+...    .+++++++|.+++.|++++..     ....+..+...|....       -.+
T Consensus       293 ~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f-----~q~~r~~V~i~dGl~~~~~~~k~~~~  367 (482)
T KOG2352|consen  293 LDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGF-----MQSDRNKVHIADGLDFLQRTAKSQQE  367 (482)
T ss_pred             ccccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhch-----hhhhhhhhhHhhchHHHHHHhhcccc
Confidence            345667899999999998777655    999999999999999998765     1112445555555422       123


Q ss_pred             CCCeeEEEEccC---------------hHHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         201 GGPYDVIFFGAG---------------TTEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       201 ~~~fD~Ii~~~~---------------~~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +..||+++.+..               .+.++..+...|.|-|.+++..-..
T Consensus       368 ~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r  419 (482)
T KOG2352|consen  368 DICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTR  419 (482)
T ss_pred             ccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecC
Confidence            467999986421               1235678889999999998866554

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=91.77  E-value=1  Score=41.68  Aligned_cols=91  Identities=21%  Similarity=0.138  Sum_probs=59.0

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc---e-EEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeE
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL---S-SVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDV  206 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~---~-V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~  206 (364)
                      +.++.+||-.|||. |..+..+++.   + |++++.+++..+.+++.- .       ...+.....+   . .....+|+
T Consensus        95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g-~-------~~~~~~~~~~---~-~~~~~~d~  162 (277)
T cd08255          95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALG-P-------ADPVAADTAD---E-IGGRGADV  162 (277)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcC-C-------Cccccccchh---h-hcCCCCCE
Confidence            67899999998765 5556666655   6 999999988877665431 0       0111100000   0 12346899


Q ss_pred             EEEccChHHHHHHHHhccCCCcEEEEEE
Q psy7830         207 IFFGAGTTEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       207 Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      |+.............+.|+++|+++..-
T Consensus       163 vl~~~~~~~~~~~~~~~l~~~g~~~~~g  190 (277)
T cd08255         163 VIEASGSPSALETALRLLRDRGRVVLVG  190 (277)
T ss_pred             EEEccCChHHHHHHHHHhcCCcEEEEEe
Confidence            9876555556778889999999988643

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=91.74  E-value=0.91  Score=43.52  Aligned_cols=91  Identities=23%  Similarity=0.304  Sum_probs=56.9

Q ss_pred             CCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEcCCCCCCCCCCCeeEE
Q psy7830         134 NGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       134 ~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~D~~~~~~~~~~fD~I  207 (364)
                      ++.+||-.|||. |..+..+++.    ++++++.++...+.+++. .        .+.+ .....+..........+|+|
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g--------~~~vi~~~~~~~~~~~~~~~~vd~v  235 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-G--------ADETVNLARDPLAAYAADKGDFDVV  235 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-C--------CCEEEcCCchhhhhhhccCCCccEE
Confidence            789999988775 5566666655    688999988887765542 1        1111 00000111111112359999


Q ss_pred             EEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         208 FFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       208 i~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +...........+.+.|+++|+++..
T Consensus       236 ld~~g~~~~~~~~~~~L~~~G~~v~~  261 (339)
T cd08232         236 FEASGAPAALASALRVVRPGGTVVQV  261 (339)
T ss_pred             EECCCCHHHHHHHHHHHhcCCEEEEE
Confidence            97655455677888999999998863

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=91.65  E-value=0.3  Score=39.50  Aligned_cols=44  Identities=16%  Similarity=0.061  Sum_probs=31.0

Q ss_pred             HHHHHHHHHhccCC--CCCEEEEECCCccHHHHHHHcc--eEEEEeCC
Q psy7830         120 YIARCLEQLVDHLQ--NGSRVLDIGSGQGYMATAKEWL--SSVRQLLL  163 (364)
Q Consensus       120 ~~a~~l~~L~~~l~--~g~~VLDiGcGsG~~a~~la~~--~V~~vDis  163 (364)
                      +.+.++++....-.  +.....|+|||+|.+.-.|...  .=.|+|.-
T Consensus        42 IAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R   89 (112)
T PF07757_consen   42 IAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR   89 (112)
T ss_pred             HHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence            44556665543222  3557999999999999888777  77888864

; GO: 0008168 methyltransferase activity

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=91.56  E-value=0.93  Score=42.77  Aligned_cols=100  Identities=15%  Similarity=0.069  Sum_probs=69.5

Q ss_pred             CCCCEEEEECCCccHHHHHHH--cc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCC--CCeeE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKE--WL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEG--GPYDV  206 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la--~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~--~~fD~  206 (364)
                      ..|..|+-+| -.-..+++++  .+  +|..+|||+..++...+-++.     ++.+|++.+.-|..+..+++  ..||+
T Consensus       151 L~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee-----~g~~~ie~~~~Dlr~plpe~~~~kFDv  224 (354)
T COG1568         151 LEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEE-----LGYNNIEAFVFDLRNPLPEDLKRKFDV  224 (354)
T ss_pred             cCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHH-----hCccchhheeehhcccChHHHHhhCCe
Confidence            3577899998 3333333333  33  899999999999999998888     56678999999998766553  68999


Q ss_pred             EEEccChH-----HHHHHHHhccCCC---cEEEEEEcCCC
Q psy7830         207 IFFGAGTT-----EVSKTILSQLKPN---GRIVAPVGNVW  238 (364)
Q Consensus       207 Ii~~~~~~-----~l~~~l~~~LkpG---G~Lvi~~~~~~  238 (364)
                      ++.+.+-.     .++..-...||--   |++-++.....
T Consensus       225 fiTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ress  264 (354)
T COG1568         225 FITDPPETIKALKLFLGRGIATLKGEGCAGYFGITRRESS  264 (354)
T ss_pred             eecCchhhHHHHHHHHhccHHHhcCCCccceEeeeecccc
Confidence            88776543     1233333455554   67777665544

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=91.52  E-value=0.86  Score=39.85  Aligned_cols=93  Identities=20%  Similarity=0.178  Sum_probs=56.1

Q ss_pred             ECCCccHHHHHHHcc-----eEEE--EeCCHHHHHHH---HHHHHhcCCCCCCCCCEEEE-EcCCCCCCC----CCCCee
Q psy7830         141 IGSGQGYMATAKEWL-----SSVR--QLLLPETLNNS---LKNIKISRPDLLQSKTLEFI-LKDARWGHA----EGGPYD  205 (364)
Q Consensus       141 iGcGsG~~a~~la~~-----~V~~--vDis~~~l~~a---~~~~~~~~~~~l~~~~v~~~-~~D~~~~~~----~~~~fD  205 (364)
                      +|=|.=.++..+++.     .+++  .|...+..+.-   .+|++.     +...++.+. -.|+..+..    ....||
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~-----L~~~g~~V~~~VDat~l~~~~~~~~~~FD   77 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEE-----LRELGVTVLHGVDATKLHKHFRLKNQRFD   77 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHH-----HhhcCCccccCCCCCcccccccccCCcCC
Confidence            455555566666655     4444  55555554443   355554     222234333 346654432    246899


Q ss_pred             EEEEccChH-------------------HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         206 VIFFGAGTT-------------------EVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       206 ~Ii~~~~~~-------------------~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      .|+.|.+..                   +++..+.++|+++|.+.++.....
T Consensus        78 rIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~  129 (166)
T PF10354_consen   78 RIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ  129 (166)
T ss_pred             EEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence            999886642                   245788899999999999987754

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=91.35  E-value=2.1  Score=40.88  Aligned_cols=92  Identities=22%  Similarity=0.207  Sum_probs=58.4

Q ss_pred             CCCCCEEEEECC--CccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEc-CCCCC--CCCCC
Q psy7830         132 LQNGSRVLDIGS--GQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILK-DARWG--HAEGG  202 (364)
Q Consensus       132 l~~g~~VLDiGc--GsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~-D~~~~--~~~~~  202 (364)
                      +++|++||=.|+  |.|..+..+++.   +|++++.+++..+.+++ +        +.+.+ ..... +....  ....+
T Consensus       136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~-l--------Ga~~vi~~~~~~~~~~~~~~~~~~  206 (325)
T TIGR02825       136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK-L--------GFDVAFNYKTVKSLEETLKKASPD  206 (325)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-c--------CCCEEEeccccccHHHHHHHhCCC
Confidence            688999999984  356666777766   89999999888777754 2        21111 11110 11100  01124


Q ss_pred             CeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      .+|+|+-...- .......+.|++||+++..
T Consensus       207 gvdvv~d~~G~-~~~~~~~~~l~~~G~iv~~  236 (325)
T TIGR02825       207 GYDCYFDNVGG-EFSNTVIGQMKKFGRIAIC  236 (325)
T ss_pred             CeEEEEECCCH-HHHHHHHHHhCcCcEEEEe
Confidence            69999865544 3457889999999999853

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=91.27  E-value=1.2  Score=43.50  Aligned_cols=92  Identities=18%  Similarity=0.147  Sum_probs=54.6

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      .++|.+||-.|+|. |..+..+++.   ++++++.+++....+.+.+        +...+ +...+..........+|+|
T Consensus       178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~--------Ga~~~-i~~~~~~~~~~~~~~~D~v  248 (357)
T PLN02514        178 KQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHL--------GADDY-LVSSDAAEMQEAADSLDYI  248 (357)
T ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhc--------CCcEE-ecCCChHHHHHhcCCCcEE
Confidence            36789999887654 4555556655   7888888877655544332        21111 1111110000011358998


Q ss_pred             EEccChHHHHHHHHhccCCCcEEEE
Q psy7830         208 FFGAGTTEVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       208 i~~~~~~~l~~~l~~~LkpGG~Lvi  232 (364)
                      +-............+.|++||+++.
T Consensus       249 id~~g~~~~~~~~~~~l~~~G~iv~  273 (357)
T PLN02514        249 IDTVPVFHPLEPYLSLLKLDGKLIL  273 (357)
T ss_pred             EECCCchHHHHHHHHHhccCCEEEE
Confidence            8765545567778899999999886

>KOG2078|consensus

Probab=91.24  E-value=0.16  Score=50.39  Aligned_cols=65  Identities=23%  Similarity=0.219  Sum_probs=55.8

Q ss_pred             cCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC
Q psy7830         131 HLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH  198 (364)
Q Consensus       131 ~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~  198 (364)
                      ..++|..|.|+.||-|-+++.+++.  +|++-|.++++++..+.|+..|.   +...+++.+..|+....
T Consensus       246 ~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNk---v~~~~iei~Nmda~~Fl  312 (495)
T KOG2078|consen  246 LFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNK---VDPSAIEIFNMDAKDFL  312 (495)
T ss_pred             ccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccc---cchhheeeecccHHHHh
Confidence            4689999999999999999998887  99999999999999999998765   55556888888876543

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=91.03  E-value=0.84  Score=44.11  Aligned_cols=93  Identities=16%  Similarity=0.122  Sum_probs=56.1

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc---e-EEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcCCCCC--CCCCCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL---S-SVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKDARWG--HAEGGP  203 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~---~-V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D~~~~--~~~~~~  203 (364)
                      +.+|.+||-.|+|+ |..+..+++.   + |++++.+++..+.+++ +        +... +.....+....  ......
T Consensus       158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~--------Ga~~~i~~~~~~~~~~~~~~~~~~  228 (347)
T PRK10309        158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS-L--------GAMQTFNSREMSAPQIQSVLRELR  228 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH-c--------CCceEecCcccCHHHHHHHhcCCC
Confidence            56899999998764 4455555555   4 7899999988877643 2        1111 11111110000  011235


Q ss_pred             ee-EEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         204 YD-VIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       204 fD-~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +| +|+-.......+....+.|++||++++.
T Consensus       229 ~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~  259 (347)
T PRK10309        229 FDQLILETAGVPQTVELAIEIAGPRAQLALV  259 (347)
T ss_pred             CCeEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            77 6665555456778888999999998864

>KOG2798|consensus

Probab=90.93  E-value=0.9  Score=43.58  Aligned_cols=51  Identities=22%  Similarity=0.148  Sum_probs=37.9

Q ss_pred             HHHHHHHHHhccCCC------CCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHH
Q psy7830         120 YIARCLEQLVDHLQN------GSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNS  170 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~------g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a  170 (364)
                      +...+++.|..+..+      .-+||--|||.|.++..++..  .+-|-|.|--|+-..
T Consensus       130 ~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S  188 (369)
T KOG2798|consen  130 LYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICS  188 (369)
T ss_pred             hhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHH
Confidence            445667777654443      458999999999999999988  777778877765443

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=90.89  E-value=1.7  Score=42.64  Aligned_cols=93  Identities=16%  Similarity=0.129  Sum_probs=58.3

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEE--cCCCC-CC-CCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFIL--KDARW-GH-AEG  201 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~--~D~~~-~~-~~~  201 (364)
                      +++|++||-.|||. |.+++.+++.    +|+++|.+++..+.+++.         +.+. +....  .+... .. ...
T Consensus       183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~---------Ga~~~i~~~~~~~~~~~~v~~~~~  253 (368)
T TIGR02818       183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL---------GATDCVNPNDYDKPIQEVIVEITD  253 (368)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh---------CCCeEEcccccchhHHHHHHHHhC
Confidence            67899999999864 5555666665    699999999988888552         1111 11110  00000 00 011


Q ss_pred             CCeeEEEEccChHHHHHHHHhccCCC-cEEEEE
Q psy7830         202 GPYDVIFFGAGTTEVSKTILSQLKPN-GRIVAP  233 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi~  233 (364)
                      +.+|+|+-............+.+++| |++++.
T Consensus       254 ~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~  286 (368)
T TIGR02818       254 GGVDYSFECIGNVNVMRAALECCHKGWGESIII  286 (368)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEE
Confidence            36899987655556677788899886 987754

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PRK10458 DNA cytosine methylase; Provisional

Probab=90.72  E-value=0.82  Score=46.65  Aligned_cols=40  Identities=15%  Similarity=0.094  Sum_probs=34.6

Q ss_pred             CCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHH
Q psy7830         135 GSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNI  174 (364)
Q Consensus       135 g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~  174 (364)
                      ..+++|+.||.|.++..+-..   .|.++|+++.+.+.-+.|.
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~  130 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW  130 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence            468999999999999888666   7788999999988888775

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=90.69  E-value=1.2  Score=43.31  Aligned_cols=92  Identities=15%  Similarity=0.126  Sum_probs=59.4

Q ss_pred             CCCCCEEEEECCC--ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEc-CCCCCC--CCCC
Q psy7830         132 LQNGSRVLDIGSG--QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILK-DARWGH--AEGG  202 (364)
Q Consensus       132 l~~g~~VLDiGcG--sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~-D~~~~~--~~~~  202 (364)
                      +++|++||-.|++  .|.++..+++.   +|++++.+++..+.+++.+.        .+.+ ..... +.....  ...+
T Consensus       156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lG--------a~~vi~~~~~~~~~~~i~~~~~~  227 (348)
T PLN03154        156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLG--------FDEAFNYKEEPDLDAALKRYFPE  227 (348)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcC--------CCEEEECCCcccHHHHHHHHCCC
Confidence            6789999999983  56677777776   89999999888777764332        1111 11111 111000  0123


Q ss_pred             CeeEEEEccChHHHHHHHHhccCCCcEEEE
Q psy7830         203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi  232 (364)
                      .+|+|+-...- .......+.|++||++++
T Consensus       228 gvD~v~d~vG~-~~~~~~~~~l~~~G~iv~  256 (348)
T PLN03154        228 GIDIYFDNVGG-DMLDAALLNMKIHGRIAV  256 (348)
T ss_pred             CcEEEEECCCH-HHHHHHHHHhccCCEEEE
Confidence            68999865543 467788899999999885

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=90.63  E-value=2.3  Score=38.66  Aligned_cols=105  Identities=17%  Similarity=0.149  Sum_probs=65.5

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccH--HHHHHH--cc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCC-CCEEEEEc
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGY--MATAKE--WL----SSVRQLLLPETLNNSLKNIKISRPDLLQS-KTLEFILK  192 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~--~a~~la--~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~-~~v~~~~~  192 (364)
                      +..+..|.. =..-..+++.+|+-|.  .++.|+  ..    ++++|-.+++.+...++.+..     .+. +-++|+.+
T Consensus        30 aEfISAlAA-G~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~-----~~~~~~vEfvvg  103 (218)
T PF07279_consen   30 AEFISALAA-GWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGE-----AGLSDVVEFVVG  103 (218)
T ss_pred             HHHHHHHhc-cccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhh-----ccccccceEEec
Confidence            445555541 1234567888665432  233333  22    899999998888888887765     222 34689988


Q ss_pred             CCC-CCCCCCCCeeEEEEccChHHHHHHHHhccC--CCcEEEE
Q psy7830         193 DAR-WGHAEGGPYDVIFFGAGTTEVSKTILSQLK--PNGRIVA  232 (364)
Q Consensus       193 D~~-~~~~~~~~fD~Ii~~~~~~~l~~~l~~~Lk--pGG~Lvi  232 (364)
                      +.. .........|+++.++-.+.....+.+.++  |.|-+++
T Consensus       104 ~~~e~~~~~~~~iDF~vVDc~~~d~~~~vl~~~~~~~~GaVVV  146 (218)
T PF07279_consen  104 EAPEEVMPGLKGIDFVVVDCKREDFAARVLRAAKLSPRGAVVV  146 (218)
T ss_pred             CCHHHHHhhccCCCEEEEeCCchhHHHHHHHHhccCCCceEEE
Confidence            853 334444679999999888776655555554  4565554

The function of this family is unknown.

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=90.50  E-value=0.95  Score=44.18  Aligned_cols=22  Identities=18%  Similarity=0.182  Sum_probs=15.4

Q ss_pred             CCCCEEEEECCCccHHHHHHHc
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEW  154 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~  154 (364)
                      ....+|+|+||.+|..++.+..
T Consensus        15 ~~~~~iaD~GcS~G~Nsl~~~~   36 (334)
T PF03492_consen   15 PKPFRIADLGCSSGPNSLLAVS   36 (334)
T ss_dssp             TTEEEEEEES--SSHHHHHHHH
T ss_pred             CCceEEEecCCCCCccHHHHHH
Confidence            3456899999999999876643

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=90.15  E-value=4.7  Score=35.12  Aligned_cols=106  Identities=23%  Similarity=0.204  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC
Q psy7830         118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA  194 (364)
Q Consensus       118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~  194 (364)
                      ..+...+++.+.+...++.+|+=|||=+-+..+.-...   +++..|+|...-..             + .+ .|+.-|.
T Consensus         9 ~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~-------------~-~~-~F~fyD~   73 (162)
T PF10237_consen    9 DETAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQF-------------G-GD-EFVFYDY   73 (162)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhc-------------C-Cc-ceEECCC
Confidence            34556666666654567789999999987777665112   89999999554221             1 12 3444454


Q ss_pred             CCC---CCC-CCCeeEEEEccChH--H----HHHHHHhccCCCcEEEEEEcCCC
Q psy7830         195 RWG---HAE-GGPYDVIFFGAGTT--E----VSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       195 ~~~---~~~-~~~fD~Ii~~~~~~--~----l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      ...   +.. .++||+|+++.++-  .    ....+..++|+++.+++..+...
T Consensus        74 ~~p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~~  127 (162)
T PF10237_consen   74 NEPEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEEM  127 (162)
T ss_pred             CChhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHHH
Confidence            321   111 36899999998872  2    34566667789999998887643

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=89.95  E-value=2.7  Score=39.29  Aligned_cols=97  Identities=10%  Similarity=0.050  Sum_probs=55.5

Q ss_pred             CCEEEEECCCccHHHHHHHcc---------eEEEEeCCH--------------------------HHHHHHHHHHHhcCC
Q psy7830         135 GSRVLDIGSGQGYMATAKEWL---------SSVRQLLLP--------------------------ETLNNSLKNIKISRP  179 (364)
Q Consensus       135 g~~VLDiGcGsG~~a~~la~~---------~V~~vDis~--------------------------~~l~~a~~~~~~~~~  179 (364)
                      ...|+|.||-.|..++.++..         ++++.|.=+                          ..++..++|+.+.. 
T Consensus        75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g-  153 (248)
T PF05711_consen   75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG-  153 (248)
T ss_dssp             -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT-
T ss_pred             CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC-
Confidence            347999999999877654321         688887421                          12333444444311 


Q ss_pred             CCCCCCCEEEEEcCCCCCCCC--CCCeeEEEEccChH----HHHHHHHhccCCCcEEEEEE
Q psy7830         180 DLLQSKTLEFILKDARWGHAE--GGPYDVIFFGAGTT----EVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       180 ~~l~~~~v~~~~~D~~~~~~~--~~~fD~Ii~~~~~~----~l~~~l~~~LkpGG~Lvi~~  234 (364)
                        +..++++++.|...+..+.  ..++-++..+..+.    ..++.+...|.|||++++-.
T Consensus       154 --l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DD  212 (248)
T PF05711_consen  154 --LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDD  212 (248)
T ss_dssp             --TSSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred             --CCcccEEEECCcchhhhccCCCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeC
Confidence              2236899999997654432  24566666665543    46789999999999999643

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=89.67  E-value=2.9  Score=40.92  Aligned_cols=93  Identities=17%  Similarity=0.152  Sum_probs=57.1

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEc--CCCCCC--CCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILK--DARWGH--AEG  201 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~--D~~~~~--~~~  201 (364)
                      +++|++||-+|+|. |.++..+++.    +|+++|.+++.++.+++ +        +.+. +.....  +.....  ...
T Consensus       184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~-l--------Ga~~~i~~~~~~~~~~~~v~~~~~  254 (368)
T cd08300         184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK-F--------GATDCVNPKDHDKPIQQVLVEMTD  254 (368)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-c--------CCCEEEcccccchHHHHHHHHHhC
Confidence            67899999998753 4455555554    59999999998887754 2        2111 111111  010000  012


Q ss_pred             CCeeEEEEccChHHHHHHHHhccCCC-cEEEEE
Q psy7830         202 GPYDVIFFGAGTTEVSKTILSQLKPN-GRIVAP  233 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi~  233 (364)
                      +.+|+|+-............+.|+++ |+++..
T Consensus       255 ~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~  287 (368)
T cd08300         255 GGVDYTFECIGNVKVMRAALEACHKGWGTSVII  287 (368)
T ss_pred             CCCcEEEECCCChHHHHHHHHhhccCCCeEEEE
Confidence            36899987655455677788899987 888753

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=89.64  E-value=3.6  Score=39.11  Aligned_cols=92  Identities=22%  Similarity=0.225  Sum_probs=57.8

Q ss_pred             CCCCCEEEEECCC-ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEcCCCCCCCCCCCeeE
Q psy7830         132 LQNGSRVLDIGSG-QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILKDARWGHAEGGPYDV  206 (364)
Q Consensus       132 l~~g~~VLDiGcG-sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~D~~~~~~~~~~fD~  206 (364)
                      +.++.+||-.||| .|..+..+++.   +|++++.+++..+.+++ ...        ..+ .....+....  ..+.+|+
T Consensus       160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~-~g~--------~~~~~~~~~~~~~~--~~~~~d~  228 (330)
T cd08245         160 PRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARK-LGA--------DEVVDSGAELDEQA--AAGGADV  228 (330)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-hCC--------cEEeccCCcchHHh--ccCCCCE
Confidence            6788999999886 45555555555   89999999988777643 211        111 0000000000  1236899


Q ss_pred             EEEccChHHHHHHHHhccCCCcEEEEEE
Q psy7830         207 IFFGAGTTEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       207 Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ++.............+.|+++|+++...
T Consensus       229 vi~~~~~~~~~~~~~~~l~~~G~~i~~~  256 (330)
T cd08245         229 ILVTVVSGAAAEAALGGLRRGGRIVLVG  256 (330)
T ss_pred             EEECCCcHHHHHHHHHhcccCCEEEEEC
Confidence            9865454566778889999999888653

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=89.60  E-value=1  Score=44.09  Aligned_cols=93  Identities=18%  Similarity=0.183  Sum_probs=56.5

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEcCC--CC-CC-CCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILKDA--RW-GH-AEG  201 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~D~--~~-~~-~~~  201 (364)
                      +++|.+||-+|+|+ |..+..+++.    +|+++|.++...+.+++ +        +...+ .....+.  .. .. ...
T Consensus       182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~-~--------ga~~~i~~~~~~~~~~~~~~~~~~  252 (365)
T cd08277         182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE-F--------GATDFINPKDSDKPVSEVIREMTG  252 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-c--------CCCcEeccccccchHHHHHHHHhC
Confidence            67899999998753 4444555555    68999999988887754 2        11111 1111000  00 00 011


Q ss_pred             CCeeEEEEccChHHHHHHHHhccCCC-cEEEEE
Q psy7830         202 GPYDVIFFGAGTTEVSKTILSQLKPN-GRIVAP  233 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi~  233 (364)
                      ..+|+|+-.......+....+.++++ |+++..
T Consensus       253 ~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~  285 (365)
T cd08277         253 GGVDYSFECTGNADLMNEALESTKLGWGVSVVV  285 (365)
T ss_pred             CCCCEEEECCCChHHHHHHHHhcccCCCEEEEE
Confidence            36899986655456677788899885 888764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=89.49  E-value=1.1  Score=44.60  Aligned_cols=91  Identities=21%  Similarity=0.173  Sum_probs=56.7

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc---CCCC-C--CCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK---DARW-G--HAE  200 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~---D~~~-~--~~~  200 (364)
                      +++|++||-.|+|+ |.++..+++.    .|+.+|.+++.++.+++         ++..  .+...   +... .  ...
T Consensus       183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~---------~Ga~--~v~~~~~~~~~~~v~~~~~  251 (393)
T TIGR02819       183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS---------FGCE--TVDLSKDATLPEQIEQILG  251 (393)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH---------cCCe--EEecCCcccHHHHHHHHcC
Confidence            67899998887764 4455555654    46677888888887765         2221  11111   1100 0  011


Q ss_pred             CCCeeEEEEccChH--------------HHHHHHHhccCCCcEEEEE
Q psy7830         201 GGPYDVIFFGAGTT--------------EVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~--------------~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ...+|+|+-.....              ..++...+.+++||++++.
T Consensus       252 ~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~  298 (393)
T TIGR02819       252 EPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIP  298 (393)
T ss_pred             CCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEe
Confidence            23589998655543              4678888999999999873

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=89.43  E-value=2.6  Score=39.92  Aligned_cols=85  Identities=22%  Similarity=0.288  Sum_probs=55.8

Q ss_pred             CCCCCEEEEECCCccHHHHHH---Hcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCee
Q psy7830         132 LQNGSRVLDIGSGQGYMATAK---EWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYD  205 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~l---a~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD  205 (364)
                      ++++.+||-.|+  |.++..+   ++.   +|++++.+++..+.+++ +..        ..+...    ... .....+|
T Consensus       153 ~~~g~~vlV~g~--g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~-~g~--------~~~~~~----~~~-~~~~~~d  216 (319)
T cd08242         153 ITPGDKVAVLGD--GKLGLLIAQVLALTGPDVVLVGRHSEKLALARR-LGV--------ETVLPD----EAE-SEGGGFD  216 (319)
T ss_pred             CCCCCEEEEECC--CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cCC--------cEEeCc----ccc-ccCCCCC
Confidence            678899999875  4455444   433   88999999988888776 211        111111    111 1235699


Q ss_pred             EEEEccChHHHHHHHHhccCCCcEEEE
Q psy7830         206 VIFFGAGTTEVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       206 ~Ii~~~~~~~l~~~l~~~LkpGG~Lvi  232 (364)
                      +|+-...-........+.|+++|+++.
T Consensus       217 ~vid~~g~~~~~~~~~~~l~~~g~~v~  243 (319)
T cd08242         217 VVVEATGSPSGLELALRLVRPRGTVVL  243 (319)
T ss_pred             EEEECCCChHHHHHHHHHhhcCCEEEE
Confidence            998765445566778889999999986

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=89.33  E-value=2.2  Score=40.68  Aligned_cols=91  Identities=18%  Similarity=0.175  Sum_probs=57.7

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc---e-EEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC----CCCCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL---S-SVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG----HAEGG  202 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~---~-V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~----~~~~~  202 (364)
                      +.++.+||-+|+|. |..++.+++.   + |++++.+++..+.+++.         +..  .++..+-...    .....
T Consensus       157 ~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~---------g~~--~~~~~~~~~~~~~~~~~~~  225 (334)
T cd08234         157 IKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL---------GAT--ETVDPSREDPEAQKEDNPY  225 (334)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh---------CCe--EEecCCCCCHHHHHHhcCC
Confidence            67889999998652 4455555555   5 88899998887776432         111  1221111110    11234


Q ss_pred             CeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      .+|+|+.............+.|+++|+++..
T Consensus       226 ~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~  256 (334)
T cd08234         226 GFDVVIEATGVPKTLEQAIEYARRGGTVLVF  256 (334)
T ss_pred             CCcEEEECCCChHHHHHHHHHHhcCCEEEEE
Confidence            6999997655456777888999999998753

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=89.16  E-value=3.7  Score=40.02  Aligned_cols=101  Identities=21%  Similarity=0.169  Sum_probs=64.0

Q ss_pred             HHHHHhccCCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc----CC
Q psy7830         124 CLEQLVDHLQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK----DA  194 (364)
Q Consensus       124 ~l~~L~~~l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~----D~  194 (364)
                      .+..+.  +++|++|.-+|||. |..++.-|+.    +++++|+++..++.|++-         +  -.+++..    |+
T Consensus       177 v~nta~--v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f---------G--AT~~vn~~~~~~v  243 (366)
T COG1062         177 VVNTAK--VEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF---------G--ATHFVNPKEVDDV  243 (366)
T ss_pred             hhhccc--CCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc---------C--CceeecchhhhhH
Confidence            444444  78999999999996 4444444443    999999999999999873         1  1222222    11


Q ss_pred             CCC--CCCCCCeeEEEEccChHHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         195 RWG--HAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       195 ~~~--~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      -+.  ...++..|.++-...-...++...+.+.++|..++.--..
T Consensus       244 v~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~  288 (366)
T COG1062         244 VEAIVELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAG  288 (366)
T ss_pred             HHHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence            110  0112356776655555557778888888899887754443

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=89.08  E-value=2  Score=42.40  Aligned_cols=91  Identities=20%  Similarity=0.185  Sum_probs=53.4

Q ss_pred             CCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHH-HHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         133 QNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPET-LNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       133 ~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~-l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      ++|++||-.|+|. |..+..+++.   +|++++.+++. .+.+++         ++.+.+ +...+........+.+|+|
T Consensus       177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~---------lGa~~~-i~~~~~~~v~~~~~~~D~v  246 (375)
T PLN02178        177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDR---------LGADSF-LVTTDSQKMKEAVGTMDFI  246 (375)
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHh---------CCCcEE-EcCcCHHHHHHhhCCCcEE
Confidence            5789999998864 4555556665   88888887543 334322         222111 1001100000001258999


Q ss_pred             EEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         208 FFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       208 i~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +-............+.+++||+++..
T Consensus       247 id~~G~~~~~~~~~~~l~~~G~iv~v  272 (375)
T PLN02178        247 IDTVSAEHALLPLFSLLKVSGKLVAL  272 (375)
T ss_pred             EECCCcHHHHHHHHHhhcCCCEEEEE
Confidence            87655555677788999999998864

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=89.05  E-value=5.4  Score=38.34  Aligned_cols=92  Identities=21%  Similarity=0.251  Sum_probs=58.3

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc---e-EEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEcC-------CCCCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL---S-SVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILKD-------ARWGH  198 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~---~-V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~D-------~~~~~  198 (364)
                      ++++.+||-.|+|. |..+..+++.   + |++++.+++..+.+++ +..        ..+ .....+       .... 
T Consensus       160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~-~g~--------~~vi~~~~~~~~~~~~~~~~~-  229 (343)
T cd05285         160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKE-LGA--------THTVNVRTEDTPESAEKIAEL-  229 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-cCC--------cEEeccccccchhHHHHHHHH-
Confidence            67899999888764 5555666665   5 8899888887776644 211        111 111111       1111 


Q ss_pred             CCCCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         199 AEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       199 ~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      .....+|+|+-............+.|+++|+++..
T Consensus       230 ~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~  264 (343)
T cd05285         230 LGGKGPDVVIECTGAESCIQTAIYATRPGGTVVLV  264 (343)
T ss_pred             hCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            12345999997655555677889999999998753

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=89.04  E-value=1.7  Score=43.20  Aligned_cols=19  Identities=16%  Similarity=0.160  Sum_probs=15.5

Q ss_pred             CCEEEEECCCccHHHHHHH
Q psy7830         135 GSRVLDIGSGQGYMATAKE  153 (364)
Q Consensus       135 g~~VLDiGcGsG~~a~~la  153 (364)
                      ..+|+|+|||+|..+..+.
T Consensus        64 ~~~iaDlGcs~G~ntl~~v   82 (386)
T PLN02668         64 PFTAVDLGCSSGSNTIHII   82 (386)
T ss_pred             ceeEEEecCCCCccHHHHH
Confidence            5689999999998876653

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=88.94  E-value=0.36  Score=39.12  Aligned_cols=34  Identities=29%  Similarity=0.358  Sum_probs=24.8

Q ss_pred             CeeEEEEccChHH------------HHHHHHhccCCCcEEEEEEcC
Q psy7830         203 PYDVIFFGAGTTE------------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       203 ~fD~Ii~~~~~~~------------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      .||+|+|-....|            ++..+.+.|+|||.+++.-.+
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~   46 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQP   46 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence            4899998777644            568999999999999986644

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>KOG2651|consensus

Probab=88.79  E-value=1.3  Score=43.68  Aligned_cols=40  Identities=18%  Similarity=0.156  Sum_probs=33.9

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHH
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLK  172 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~  172 (364)
                      .+-..|+|+|.|.|+++..++-.   +|++||-|....+.|++
T Consensus       152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence            35578999999999999988866   99999999877777654

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=88.75  E-value=1.5  Score=41.19  Aligned_cols=70  Identities=11%  Similarity=0.034  Sum_probs=54.5

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF  209 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~  209 (364)
                      +.+|+...|+|+-+|+.|-.+.++  .|++||.-+-+     +++       .+...|+-...|.....+.....|-.+|
T Consensus       209 L~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~ma-----~sL-------~dtg~v~h~r~DGfk~~P~r~~idWmVC  276 (358)
T COG2933         209 LAPGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGPMA-----QSL-------MDTGQVTHLREDGFKFRPTRSNIDWMVC  276 (358)
T ss_pred             hcCCceeeecccCCCccchhhhhcceEEEEeccchhh-----hhh-------hcccceeeeeccCcccccCCCCCceEEe
Confidence            568999999999999999999888  99999986543     222       2235788888898887665567888888


Q ss_pred             ccCh
Q psy7830         210 GAGT  213 (364)
Q Consensus       210 ~~~~  213 (364)
                      +.+-
T Consensus       277 DmVE  280 (358)
T COG2933         277 DMVE  280 (358)
T ss_pred             ehhc
Confidence            7653

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=87.99  E-value=4  Score=39.07  Aligned_cols=93  Identities=23%  Similarity=0.230  Sum_probs=56.4

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcCCCC---CCCCCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKDARW---GHAEGG  202 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D~~~---~~~~~~  202 (364)
                      ++++.+||..|+|. |..++.+++.    .|++++.++...+.+++.- .        .. +.....+...   ......
T Consensus       165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g-~--------~~vi~~~~~~~~~~i~~~~~~~  235 (347)
T cd05278         165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAG-A--------TDIINPKNGDIVEQILELTGGR  235 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhC-C--------cEEEcCCcchHHHHHHHHcCCC
Confidence            67889999977652 5555666665    5788888887776665421 1        11 1111111100   011224


Q ss_pred             CeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      .+|+|+-.......+....+.|+++|+++..
T Consensus       236 ~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~  266 (347)
T cd05278         236 GVDCVIEAVGFEETFEQAVKVVRPGGTIANV  266 (347)
T ss_pred             CCcEEEEccCCHHHHHHHHHHhhcCCEEEEE
Confidence            6999986554445778888999999998753

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=87.93  E-value=4.4  Score=39.08  Aligned_cols=92  Identities=22%  Similarity=0.285  Sum_probs=57.7

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEcCCCC-C--CCCCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILKDARW-G--HAEGG  202 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~D~~~-~--~~~~~  202 (364)
                      ++++.+||-.|+|+ |..++.+++.    .|+++|.+++..+.+++         ++.+.+ .....+... .  .....
T Consensus       164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~---------~g~~~~v~~~~~~~~~~i~~~~~~~  234 (351)
T cd08285         164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE---------YGATDIVDYKNGDVVEQILKLTGGK  234 (351)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH---------cCCceEecCCCCCHHHHHHHHhCCC
Confidence            67899999998763 4555555655    58999999888777764         121111 111111100 0  01124


Q ss_pred             CeeEEEEccChHHHHHHHHhccCCCcEEEE
Q psy7830         203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi  232 (364)
                      .+|+|+-...-........+.|+++|+++.
T Consensus       235 ~~d~vld~~g~~~~~~~~~~~l~~~G~~v~  264 (351)
T cd08285         235 GVDAVIIAGGGQDTFEQALKVLKPGGTISN  264 (351)
T ss_pred             CCcEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            699998765555677888999999999875

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=87.87  E-value=1.2  Score=47.47  Aligned_cols=101  Identities=14%  Similarity=0.046  Sum_probs=61.4

Q ss_pred             CCCEEEEECCCccHHHHHHHc---------------c-eEEEEeCCHH---HHHHH-----------HHHHHhcCCCCCC
Q psy7830         134 NGSRVLDIGSGQGYMATAKEW---------------L-SSVRQLLLPE---TLNNS-----------LKNIKISRPDLLQ  183 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~---------------~-~V~~vDis~~---~l~~a-----------~~~~~~~~~~~l~  183 (364)
                      ..-+|+|+|-|+|+......+               . +++++|.+|-   -+..+           ++-.+.......+
T Consensus        57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g  136 (662)
T PRK01747         57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG  136 (662)
T ss_pred             CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence            346899999999986644330               2 8999998652   22222           1111110000001


Q ss_pred             C-------C--CEEEEEcCCCCCCCC-CCCeeEEEEccCh---------HHHHHHHHhccCCCcEEEEEE
Q psy7830         184 S-------K--TLEFILKDARWGHAE-GGPYDVIFFGAGT---------TEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       184 ~-------~--~v~~~~~D~~~~~~~-~~~fD~Ii~~~~~---------~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      .       .  ++++..+|+.+.... ...||+++.+.-.         ..++..+.++++|||+++--.
T Consensus       137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t  206 (662)
T PRK01747        137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT  206 (662)
T ss_pred             ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence            1       1  355677887654432 2469999987543         347899999999999998544

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=87.70  E-value=1.3  Score=42.61  Aligned_cols=93  Identities=15%  Similarity=0.075  Sum_probs=63.8

Q ss_pred             CEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEcc
Q psy7830         136 SRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGA  211 (364)
Q Consensus       136 ~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~  211 (364)
                      .+|.-+|.|. |..+..++..   .|+-+|++.+.+++...-+.         .++.+...........-.++|+|+...
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~---------~rv~~~~st~~~iee~v~~aDlvIgaV  239 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG---------GRVHTLYSTPSNIEEAVKKADLVIGAV  239 (371)
T ss_pred             ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC---------ceeEEEEcCHHHHHHHhhhccEEEEEE
Confidence            3566788775 6777666655   99999999988877666542         367777766554433345789987644


Q ss_pred             ChH------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         212 GTT------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       212 ~~~------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ...      -+.+++.+.+|||+.++=...+.
T Consensus       240 LIpgakaPkLvt~e~vk~MkpGsVivDVAiDq  271 (371)
T COG0686         240 LIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQ  271 (371)
T ss_pred             EecCCCCceehhHHHHHhcCCCcEEEEEEEcC
Confidence            332      25688999999999988544443

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=87.65  E-value=1.4  Score=42.31  Aligned_cols=93  Identities=17%  Similarity=0.154  Sum_probs=59.2

Q ss_pred             cCCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcCCCC-C--CCCCC
Q psy7830         131 HLQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKDARW-G--HAEGG  202 (364)
Q Consensus       131 ~l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D~~~-~--~~~~~  202 (364)
                      .+.++.+||..|+|. |..++.+++.   +|+++..+++..+.+++.- .        .. +.....+... .  .....
T Consensus       156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g-~--------~~v~~~~~~~~~~~l~~~~~~~  226 (337)
T cd08261         156 GVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELG-A--------DDTINVGDEDVAARLRELTDGE  226 (337)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhC-C--------CEEecCcccCHHHHHHHHhCCC
Confidence            367899999998764 6666666666   8888888888777764421 1        11 1111111100 0  11224


Q ss_pred             CeeEEEEccChHHHHHHHHhccCCCcEEEE
Q psy7830         203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi  232 (364)
                      .+|+|+....-......+.+.|+++|+++.
T Consensus       227 ~vd~vld~~g~~~~~~~~~~~l~~~G~~i~  256 (337)
T cd08261         227 GADVVIDATGNPASMEEAVELVAHGGRVVL  256 (337)
T ss_pred             CCCEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            589998765445667788899999999875

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=87.61  E-value=4.3  Score=32.41  Aligned_cols=83  Identities=22%  Similarity=0.175  Sum_probs=55.5

Q ss_pred             CCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC----CCCCCeeEEEEccC
Q psy7830         143 SGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH----AEGGPYDVIFFGAG  212 (364)
Q Consensus       143 cGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~----~~~~~fD~Ii~~~~  212 (364)
                      ||.|.++..+++.      .|+.+|.+++.++.+++.            .+.++.+|..+..    ..-..+|.|++...
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~------------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~   71 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE------------GVEVIYGDATDPEVLERAGIEKADAVVILTD   71 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT------------TSEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc------------ccccccccchhhhHHhhcCccccCEEEEccC
Confidence            5666777777665      799999999998877652            3678999987532    11246888877654


Q ss_pred             hHH---HHHHHHhccCCCcEEEEEEcCC
Q psy7830         213 TTE---VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       213 ~~~---l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      -..   ......+.+.|...+++.+.+.
T Consensus        72 ~d~~n~~~~~~~r~~~~~~~ii~~~~~~   99 (116)
T PF02254_consen   72 DDEENLLIALLARELNPDIRIIARVNDP   99 (116)
T ss_dssp             SHHHHHHHHHHHHHHTTTSEEEEEESSH
T ss_pred             CHHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence            332   3345566777888888877654

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=87.61  E-value=7.1  Score=37.46  Aligned_cols=93  Identities=16%  Similarity=0.135  Sum_probs=59.2

Q ss_pred             CCCCCEEEEECC--CccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEc-CCCC-CC-CCCC
Q psy7830         132 LQNGSRVLDIGS--GQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILK-DARW-GH-AEGG  202 (364)
Q Consensus       132 l~~g~~VLDiGc--GsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~-D~~~-~~-~~~~  202 (364)
                      +++|++||-.|+  |.|..+..+++.   +|++++.+++..+.+++.+..        +.+ ..... |... .. ....
T Consensus       149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa--------~~vi~~~~~~~~~~~i~~~~~~  220 (338)
T cd08295         149 PKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGF--------DDAFNYKEEPDLDAALKRYFPN  220 (338)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC--------ceeEEcCCcccHHHHHHHhCCC
Confidence            688999999986  345666666666   889999888888777664321        111 11111 1110 00 0124


Q ss_pred             CeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      .+|+|+-...- .......+.|+++|+++..
T Consensus       221 gvd~v~d~~g~-~~~~~~~~~l~~~G~iv~~  250 (338)
T cd08295         221 GIDIYFDNVGG-KMLDAVLLNMNLHGRIAAC  250 (338)
T ss_pred             CcEEEEECCCH-HHHHHHHHHhccCcEEEEe
Confidence            68999865543 5667888999999998853

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=87.59  E-value=4.1  Score=38.75  Aligned_cols=86  Identities=19%  Similarity=0.078  Sum_probs=53.8

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      ++++.+||=.|||. |..+..+++.   +|++++.+++..+.+++ +        +..  .++..+  ..  ....+|++
T Consensus       165 ~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~-~--------g~~--~~~~~~--~~--~~~~vD~v  229 (329)
T cd08298         165 LKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE-L--------GAD--WAGDSD--DL--PPEPLDAA  229 (329)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH-h--------CCc--EEeccC--cc--CCCcccEE
Confidence            67888998887653 2333444444   88888888876666633 2        111  111111  11  12458988


Q ss_pred             EEccChHHHHHHHHhccCCCcEEEE
Q psy7830         208 FFGAGTTEVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       208 i~~~~~~~l~~~l~~~LkpGG~Lvi  232 (364)
                      +.........+...+.|+++|+++.
T Consensus       230 i~~~~~~~~~~~~~~~l~~~G~~v~  254 (329)
T cd08298         230 IIFAPVGALVPAALRAVKKGGRVVL  254 (329)
T ss_pred             EEcCCcHHHHHHHHHHhhcCCEEEE
Confidence            8654445678889999999999885

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>TIGR00936 ahcY adenosylhomocysteinase

Probab=87.49  E-value=3.2  Score=41.58  Aligned_cols=86  Identities=13%  Similarity=0.087  Sum_probs=54.4

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      ...|++|+-+|+|. |...+..++.   +|+++|.++.....+..   .         ...+.  +..+..   ...|+|
T Consensus       192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~---~---------G~~v~--~leeal---~~aDVV  254 (406)
T TIGR00936       192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM---D---------GFRVM--TMEEAA---KIGDIF  254 (406)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh---c---------CCEeC--CHHHHH---hcCCEE
Confidence            35799999999997 4444444444   99999999865433332   1         11221  111111   346998


Q ss_pred             EEccChHHHHH-HHHhccCCCcEEEEEE
Q psy7830         208 FFGAGTTEVSK-TILSQLKPNGRIVAPV  234 (364)
Q Consensus       208 i~~~~~~~l~~-~l~~~LkpGG~Lvi~~  234 (364)
                      +......+++. .....+|+|++++..-
T Consensus       255 ItaTG~~~vI~~~~~~~mK~GailiN~G  282 (406)
T TIGR00936       255 ITATGNKDVIRGEHFENMKDGAIVANIG  282 (406)
T ss_pred             EECCCCHHHHHHHHHhcCCCCcEEEEEC
Confidence            87666666654 5888999999887644

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=87.32  E-value=4.7  Score=39.30  Aligned_cols=93  Identities=17%  Similarity=0.179  Sum_probs=55.9

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEc--CCCC-C-CCCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILK--DARW-G-HAEG  201 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~--D~~~-~-~~~~  201 (364)
                      +++|++||-.|+|. |.++..+++.    +|++++.+++..+.+++ +        +... +.....  +... . ....
T Consensus       185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~-~--------Ga~~~i~~~~~~~~~~~~v~~~~~  255 (369)
T cd08301         185 VKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK-F--------GVTEFVNPKDHDKPVQEVIAEMTG  255 (369)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-c--------CCceEEcccccchhHHHHHHHHhC
Confidence            67899999998753 3444455554    69999999988887754 2        2111 111110  0000 0 0012


Q ss_pred             CCeeEEEEccChHHHHHHHHhccCCC-cEEEEE
Q psy7830         202 GPYDVIFFGAGTTEVSKTILSQLKPN-GRIVAP  233 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi~  233 (364)
                      +.+|+++-............+.+++| |++++.
T Consensus       256 ~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~  288 (369)
T cd08301         256 GGVDYSFECTGNIDAMISAFECVHDGWGVTVLL  288 (369)
T ss_pred             CCCCEEEECCCChHHHHHHHHHhhcCCCEEEEE
Confidence            36898886655555667778889996 887753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=87.17  E-value=6.1  Score=36.87  Aligned_cols=102  Identities=14%  Similarity=0.130  Sum_probs=66.5

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc--------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC--CC
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL--------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA--EG  201 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~--------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~--~~  201 (364)
                      +..+...+|+|+|+...+..+...        +.+.+|+|...++...+.+....   .+. .+.-+++|......  +.
T Consensus        76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y---~~l-~v~~l~~~~~~~La~~~~  151 (321)
T COG4301          76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREY---PGL-EVNALCGDYELALAELPR  151 (321)
T ss_pred             hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhC---CCC-eEeehhhhHHHHHhcccC
Confidence            345789999999999998777654        88999999999988766665522   111 35556677542211  11


Q ss_pred             CCeeE-EEEccC--------hHHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         202 GPYDV-IFFGAG--------TTEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       202 ~~fD~-Ii~~~~--------~~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      .+--+ ++....        +..++..+...++||-++++-+.-.
T Consensus       152 ~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~  196 (321)
T COG4301         152 GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLR  196 (321)
T ss_pred             CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecccc
Confidence            22122 222222        2347789999999999999877543

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=87.15  E-value=5.8  Score=37.59  Aligned_cols=92  Identities=16%  Similarity=0.143  Sum_probs=57.8

Q ss_pred             CCCCCEEEEECC--CccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEcCCCC-C-CCCCCC
Q psy7830         132 LQNGSRVLDIGS--GQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILKDARW-G-HAEGGP  203 (364)
Q Consensus       132 l~~g~~VLDiGc--GsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~D~~~-~-~~~~~~  203 (364)
                      +++|++||-.|+  |.|..+..+++.   +|++++.+++..+.+++ +        +...+ .....|... . ......
T Consensus       141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~-~--------Ga~~vi~~~~~~~~~~v~~~~~~g  211 (329)
T cd08294         141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE-L--------GFDAVFNYKTVSLEEALKEAAPDG  211 (329)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-c--------CCCEEEeCCCccHHHHHHHHCCCC
Confidence            678999998884  345566666666   89999999888777765 2        11111 111111110 0 001246


Q ss_pred             eeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         204 YDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       204 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +|+|+-...- .......+.|+++|+++..
T Consensus       212 vd~vld~~g~-~~~~~~~~~l~~~G~iv~~  240 (329)
T cd08294         212 IDCYFDNVGG-EFSSTVLSHMNDFGRVAVC  240 (329)
T ss_pred             cEEEEECCCH-HHHHHHHHhhccCCEEEEE
Confidence            9999865443 5667889999999998753

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=87.14  E-value=7.2  Score=37.73  Aligned_cols=93  Identities=20%  Similarity=0.171  Sum_probs=54.3

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEcCCC----CC--CC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILKDAR----WG--HA  199 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~D~~----~~--~~  199 (364)
                      ..++.+||-.|+|. |..+..+++.    +|++++.+++..+.+++ +        +.+.+ .....+..    ..  ..
T Consensus       175 ~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~-~--------g~~~vi~~~~~~~~~~~~~i~~~~  245 (361)
T cd08231         175 VGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE-F--------GADATIDIDELPDPQRRAIVRDIT  245 (361)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-c--------CCCeEEcCcccccHHHHHHHHHHh
Confidence            34888999888642 3334444444    68889988887766643 2        11111 11110100    00  01


Q ss_pred             CCCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         200 EGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       200 ~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ....+|+|+-............+.|+++|+++..
T Consensus       246 ~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~  279 (361)
T cd08231         246 GGRGADVVIEASGHPAAVPEGLELLRRGGTYVLV  279 (361)
T ss_pred             CCCCCcEEEECCCChHHHHHHHHHhccCCEEEEE
Confidence            1246999987654455667788999999999853

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08293 PTGR2 Prostaglandin reductase

Probab=86.96  E-value=2.8  Score=40.27  Aligned_cols=92  Identities=18%  Similarity=0.155  Sum_probs=56.9

Q ss_pred             CCCC--CEEEEECC--CccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEcCCCCCC--CC
Q psy7830         132 LQNG--SRVLDIGS--GQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILKDARWGH--AE  200 (364)
Q Consensus       132 l~~g--~~VLDiGc--GsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~D~~~~~--~~  200 (364)
                      +++|  ++||-.|+  |.|..+..+++.    +|++++.+++..+.+++.+..        +.+ .....+.....  ..
T Consensus       150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa--------~~vi~~~~~~~~~~i~~~~  221 (345)
T cd08293         150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF--------DAAINYKTDNVAERLRELC  221 (345)
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC--------cEEEECCCCCHHHHHHHHC
Confidence            5555  89999986  346666667665    599999998887777654321        111 11111111000  01


Q ss_pred             CCCeeEEEEccChHHHHHHHHhccCCCcEEEE
Q psy7830         201 GGPYDVIFFGAGTTEVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi  232 (364)
                      ...+|+|+-...-.. .....+.|+++|+++.
T Consensus       222 ~~gvd~vid~~g~~~-~~~~~~~l~~~G~iv~  252 (345)
T cd08293         222 PEGVDVYFDNVGGEI-SDTVISQMNENSHIIL  252 (345)
T ss_pred             CCCceEEEECCCcHH-HHHHHHHhccCCEEEE
Confidence            246999986544443 5778899999999885

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=86.52  E-value=2.4  Score=40.61  Aligned_cols=93  Identities=17%  Similarity=0.174  Sum_probs=55.7

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcCCCCCCCCCCCeeE
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKDARWGHAEGGPYDV  206 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D~~~~~~~~~~fD~  206 (364)
                      +.++.+||-.|||. |..+..+++.   +|+.++.+++..+.+++ +        +.+. +.....+..........+|+
T Consensus       161 ~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~-~--------g~~~~i~~~~~~~~~~~~~~~~~d~  231 (333)
T cd08296         161 AKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK-L--------GAHHYIDTSKEDVAEALQELGGAKL  231 (333)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH-c--------CCcEEecCCCccHHHHHHhcCCCCE
Confidence            67889999999643 3444444544   89999999887777744 2        1111 11111111000001135899


Q ss_pred             EEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         207 IFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       207 Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ++.............+.|+++|+++..
T Consensus       232 vi~~~g~~~~~~~~~~~l~~~G~~v~~  258 (333)
T cd08296         232 ILATAPNAKAISALVGGLAPRGKLLIL  258 (333)
T ss_pred             EEECCCchHHHHHHHHHcccCCEEEEE
Confidence            986543455677788999999998854

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=86.33  E-value=0.51  Score=40.97  Aligned_cols=37  Identities=22%  Similarity=0.168  Sum_probs=27.9

Q ss_pred             CCeeEEEEccChHH-----------------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830         202 GPYDVIFFGAGTTE-----------------VSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~-----------------l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      ++||.+.+...++|                 ...++.++||+||.|++.++-..
T Consensus        62 ~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~  115 (177)
T PF03269_consen   62 GSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT  115 (177)
T ss_pred             ccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence            56777766655544                 35678899999999999887754

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.90  E-value=0.22  Score=42.95  Aligned_cols=42  Identities=19%  Similarity=0.223  Sum_probs=34.4

Q ss_pred             CCCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830         197 GHAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       197 ~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      ..+.+++.|+|++.-.++|        .++++++.|||||.|-+.+++..
T Consensus        41 ~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~   90 (185)
T COG4627          41 SMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLK   90 (185)
T ss_pred             ccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence            3456788999988777766        35799999999999999998864

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=85.86  E-value=3.4  Score=39.61  Aligned_cols=92  Identities=22%  Similarity=0.289  Sum_probs=57.0

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc---e-EEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcC---CCCCCCCCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL---S-SVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKD---ARWGHAEGG  202 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~---~-V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D---~~~~~~~~~  202 (364)
                      +.++.+||-.|+|. |..+..+++.   + |++++.++...+.+++ .        +... +......   +... ....
T Consensus       157 ~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~-~--------g~~~~~~~~~~~~~~~~~~-~~~~  226 (343)
T cd08236         157 ITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE-L--------GADDTINPKEEDVEKVREL-TEGR  226 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH-c--------CCCEEecCccccHHHHHHH-hCCC
Confidence            67889999998755 5566666655   5 9999888877766643 1        1111 1110000   0111 1123


Q ss_pred             CeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      .+|+|+....-......+.+.|+++|+++..
T Consensus       227 ~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~  257 (343)
T cd08236         227 GADLVIEAAGSPATIEQALALARPGGKVVLV  257 (343)
T ss_pred             CCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            5999997654456677889999999997753

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>KOG2920|consensus

Probab=85.83  E-value=0.78  Score=43.34  Aligned_cols=61  Identities=20%  Similarity=0.112  Sum_probs=40.4

Q ss_pred             CCCceecCCCccChHHHHHHHHHHH-hccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHH
Q psy7830         104 DIPYAFANQVVMEPPSYIARCLEQL-VDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLN  168 (364)
Q Consensus       104 d~~l~ig~g~~~s~P~~~a~~l~~L-~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~  168 (364)
                      ++++.+..++.-    .+..+.+.+ .+..-.|++|||+|||+|...+.+...   .+...|.+...++
T Consensus        89 EGg~k~wecS~d----l~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~  153 (282)
T KOG2920|consen   89 EGGLKLWECSVD----LLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR  153 (282)
T ss_pred             ecceEEeecHHH----HHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence            455556555433    333334333 222357899999999999888777665   8888888877763

>PRK11524 putative methyltransferase; Provisional

Probab=85.67  E-value=1.1  Score=42.66  Aligned_cols=52  Identities=19%  Similarity=0.105  Sum_probs=38.7

Q ss_pred             CCEEEEEcCCCCCC--CCCCCeeEEEEccChH----------------------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         185 KTLEFILKDARWGH--AEGGPYDVIFFGAGTT----------------------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       185 ~~v~~~~~D~~~~~--~~~~~fD~Ii~~~~~~----------------------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      .+.+++++|+.+..  .++++||+|+++.++.                      ..+.++.++|||||.+++....
T Consensus         7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~   82 (284)
T PRK11524          7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST   82 (284)
T ss_pred             CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence            45678889987642  2357899999987641                      2567899999999999986544

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=84.58  E-value=3.6  Score=38.82  Aligned_cols=55  Identities=25%  Similarity=0.193  Sum_probs=45.6

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHh
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKI  176 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~  176 (364)
                      +.+...+.....+++.|||.-+|+|....+....  ..+++|+++..++.+.+++..
T Consensus       210 ~l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~  266 (302)
T COG0863         210 ALIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQE  266 (302)
T ss_pred             HHHHHHHHhcCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHh
Confidence            3333333334679999999999999999888777  999999999999999999876

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=84.06  E-value=4.7  Score=39.30  Aligned_cols=91  Identities=18%  Similarity=0.215  Sum_probs=57.9

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC----CC-CCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW----GH-AEG  201 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~----~~-~~~  201 (364)
                      +.++.+||-.|+|. |..+..+++.    .++++|.++...+.+++.         +..  .++..+...    .. ...
T Consensus       184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~---------g~~--~~i~~~~~~~~~~v~~~~~  252 (365)
T cd08278         184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL---------GAT--HVINPKEEDLVAAIREITG  252 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc---------CCc--EEecCCCcCHHHHHHHHhC
Confidence            57889999988754 5555566655    599999998887766541         111  111111100    00 012


Q ss_pred             CCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ..+|+|+-..........+.+.|+++|+++..
T Consensus       253 ~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~  284 (365)
T cd08278         253 GGVDYALDTTGVPAVIEQAVDALAPRGTLALV  284 (365)
T ss_pred             CCCcEEEECCCCcHHHHHHHHHhccCCEEEEe
Confidence            46899987655456678889999999998863

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=83.99  E-value=4  Score=36.61  Aligned_cols=109  Identities=19%  Similarity=0.152  Sum_probs=68.3

Q ss_pred             ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE
Q psy7830         116 EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL  187 (364)
Q Consensus       116 s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v  187 (364)
                      ..|.-...+-+.|-+  .....|+|+|.-.|..++..|..        +|.++|+|-..++-+...          .++|
T Consensus        53 k~p~D~~~yQellw~--~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e----------~p~i  120 (237)
T COG3510          53 KSPSDMWNYQELLWE--LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE----------VPDI  120 (237)
T ss_pred             CCHHHHHHHHHHHHh--cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc----------CCCe
Confidence            445454555555542  34568999999999988887765        899999986554433222          2689


Q ss_pred             EEEEcCCCCCCC------CCCCeeEEEE----ccChHHHH---HHHHhccCCCcEEEEEEcC
Q psy7830         188 EFILKDARWGHA------EGGPYDVIFF----GAGTTEVS---KTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       188 ~~~~~D~~~~~~------~~~~fD~Ii~----~~~~~~l~---~~l~~~LkpGG~Lvi~~~~  236 (364)
                      .++.++..+...      ..+.|-.|++    +..+.+++   +.+..+|..|-++|+-...
T Consensus       121 ~f~egss~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~  182 (237)
T COG3510         121 LFIEGSSTDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSN  182 (237)
T ss_pred             EEEeCCCCCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEeccc
Confidence            999998765321      0123334443    23334444   4566788889888875543

>PLN02494 adenosylhomocysteinase

Probab=83.94  E-value=3.3  Score=42.22  Aligned_cols=87  Identities=13%  Similarity=0.088  Sum_probs=54.8

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      ...|++|+-+|+|. |......++.   +|+.+|.++.....+...            ...+.  +..+.   -...|+|
T Consensus       251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~------------G~~vv--~leEa---l~~ADVV  313 (477)
T PLN02494        251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALME------------GYQVL--TLEDV---VSEADIF  313 (477)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhc------------CCeec--cHHHH---HhhCCEE
Confidence            35799999999986 3333333333   999999998654443221            11111  21111   1357999


Q ss_pred             EEccChHHH-HHHHHhccCCCcEEEEEEc
Q psy7830         208 FFGAGTTEV-SKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       208 i~~~~~~~l-~~~l~~~LkpGG~Lvi~~~  235 (364)
                      +......++ .....+.+|+||+|+..-.
T Consensus       314 I~tTGt~~vI~~e~L~~MK~GAiLiNvGr  342 (477)
T PLN02494        314 VTTTGNKDIIMVDHMRKMKNNAIVCNIGH  342 (477)
T ss_pred             EECCCCccchHHHHHhcCCCCCEEEEcCC
Confidence            887666665 4788899999999887543

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=83.46  E-value=4.4  Score=39.30  Aligned_cols=105  Identities=21%  Similarity=0.150  Sum_probs=63.2

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCc--cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCC-CEEEEEcCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQ--GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSK-TLEFILKDAR  195 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGs--G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~-~v~~~~~D~~  195 (364)
                      ..++.... .+++|++||-.|+..  |.+++.+++.   .++++--+++..+.+++.         +.+ -+.+...|..
T Consensus       131 ~~~l~~~~-~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~l---------GAd~vi~y~~~~~~  200 (326)
T COG0604         131 WLALFDRA-GLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKEL---------GADHVINYREEDFV  200 (326)
T ss_pred             HHHHHHhc-CCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhc---------CCCEEEcCCcccHH
Confidence            33444422 378899999999554  4666777776   677777777666654442         211 2233333322


Q ss_pred             CC---CCCCCCeeEEEEccChHHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         196 WG---HAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       196 ~~---~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +.   ......+|+|+-...-+. +....+.|+++|+++..-...
T Consensus       201 ~~v~~~t~g~gvDvv~D~vG~~~-~~~~l~~l~~~G~lv~ig~~~  244 (326)
T COG0604         201 EQVRELTGGKGVDVVLDTVGGDT-FAASLAALAPGGRLVSIGALS  244 (326)
T ss_pred             HHHHHHcCCCCceEEEECCCHHH-HHHHHHHhccCCEEEEEecCC
Confidence            11   111236999986655444 455888999999999866554

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=83.31  E-value=11  Score=37.65  Aligned_cols=102  Identities=19%  Similarity=0.176  Sum_probs=60.8

Q ss_pred             CCCCCEEEEEC-CC-ccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc----CCCCC--
Q psy7830         132 LQNGSRVLDIG-SG-QGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK----DARWG--  197 (364)
Q Consensus       132 l~~g~~VLDiG-cG-sG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~----D~~~~--  197 (364)
                      +++|++||-+| +| -|.++..+++.      +|+++|.+++.++.+++...... ...+. ...++..    +....  
T Consensus       173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~-~~~Ga-~~~~i~~~~~~~~~~~v~  250 (410)
T cd08238         173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEA-ASRGI-ELLYVNPATIDDLHATLM  250 (410)
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccc-cccCc-eEEEECCCccccHHHHHH
Confidence            57889999997 34 46666666654      59999999999998887521100 00000 1111211    11000  


Q ss_pred             -CCCCCCeeEEEEccChHHHHHHHHhccCCCcEEEEEEc
Q psy7830         198 -HAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       198 -~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                       ......+|+|+.............+.++++|.+++..+
T Consensus       251 ~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g  289 (410)
T cd08238         251 ELTGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAG  289 (410)
T ss_pred             HHhCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEc
Confidence             01123699988765555677778899999887766443

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>TIGR00518 alaDH alanine dehydrogenase

Probab=83.24  E-value=1.8  Score=42.81  Aligned_cols=92  Identities=17%  Similarity=0.067  Sum_probs=52.7

Q ss_pred             CCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830         134 NGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF  209 (364)
Q Consensus       134 ~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~  209 (364)
                      ++.+|+-+|+|. |..++..+..   +|+.+|.++..++.+......         .+.....+...+...-..+|+|+.
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~---------~v~~~~~~~~~l~~~l~~aDvVI~  236 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG---------RIHTRYSNAYEIEDAVKRADLLIG  236 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc---------eeEeccCCHHHHHHHHccCCEEEE
Confidence            346799999873 4555544444   899999998876655443311         222111111111111146899987


Q ss_pred             ccCh-----HH-HHHHHHhccCCCcEEEEEE
Q psy7830         210 GAGT-----TE-VSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       210 ~~~~-----~~-l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ....     .. +.+++.+.+++|++++-..
T Consensus       237 a~~~~g~~~p~lit~~~l~~mk~g~vIvDva  267 (370)
T TIGR00518       237 AVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA  267 (370)
T ss_pred             ccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence            6422     22 3467778899998877433

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>cd05281 TDH Threonine dehydrogenase

Probab=83.10  E-value=18  Score=34.65  Aligned_cols=92  Identities=24%  Similarity=0.233  Sum_probs=55.4

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcCC---CCCCCCCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKDA---RWGHAEGG  202 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D~---~~~~~~~~  202 (364)
                      ..+|.+||-.|+|. |..+..+++.    +|++++-+++..+.+++.         +.+. +.....+.   ... ...+
T Consensus       161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~---------g~~~~~~~~~~~~~~~~~~-~~~~  230 (341)
T cd05281         161 DVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM---------GADVVINPREEDVVEVKSV-TDGT  230 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh---------CcceeeCcccccHHHHHHH-cCCC
Confidence            46888998877653 4555555655    477887777766665542         1111 11111111   111 1234


Q ss_pred             CeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      .+|+|+.+.........+.+.|+++|+++..
T Consensus       231 ~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~  261 (341)
T cd05281         231 GVDVVLEMSGNPKAIEQGLKALTPGGRVSIL  261 (341)
T ss_pred             CCCEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            6999997665556677788999999998754

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>KOG0023|consensus

Probab=82.72  E-value=2  Score=41.41  Aligned_cols=98  Identities=18%  Similarity=0.047  Sum_probs=59.6

Q ss_pred             CCCCCEEEEECCC-ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         132 LQNGSRVLDIGSG-QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       132 l~~g~~VLDiGcG-sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      +.||++|--+|.| -|.++..+|+.   +|+++|-+...-+.+-+++..        +..-....|-.....-.+..|.+
T Consensus       179 ~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGA--------d~fv~~~~d~d~~~~~~~~~dg~  250 (360)
T KOG0023|consen  179 LGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGA--------DVFVDSTEDPDIMKAIMKTTDGG  250 (360)
T ss_pred             CCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCc--------ceeEEecCCHHHHHHHHHhhcCc
Confidence            5689988777755 58888888887   999999997665555554432        22211111211000001234443


Q ss_pred             EEccC--hHHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         208 FFGAG--TTEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       208 i~~~~--~~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +-...  ..+.++.+.++||++|.+|+.-.+.
T Consensus       251 ~~~v~~~a~~~~~~~~~~lk~~Gt~V~vg~p~  282 (360)
T KOG0023|consen  251 IDTVSNLAEHALEPLLGLLKVNGTLVLVGLPE  282 (360)
T ss_pred             ceeeeeccccchHHHHHHhhcCCEEEEEeCcC
Confidence            32221  5667778889999999999865554

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=82.29  E-value=8.6  Score=36.79  Aligned_cols=87  Identities=21%  Similarity=0.189  Sum_probs=52.5

Q ss_pred             CCCEEEEECCCcc-HHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830         134 NGSRVLDIGSGQG-YMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF  209 (364)
Q Consensus       134 ~g~~VLDiGcGsG-~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~  209 (364)
                      .+.+|+=+|+|.= ...+..++.   +|+.+|.++...+.++.         ++   .++...+  .....-..+|+|+.
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~---------~G---~~~~~~~--~l~~~l~~aDiVI~  216 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE---------MG---LSPFHLS--ELAEEVGKIDIIFN  216 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---------cC---CeeecHH--HHHHHhCCCCEEEE
Confidence            5889999998752 222222222   89999999876554432         11   1222111  11111246899998


Q ss_pred             ccChHHHHHHHHhccCCCcEEEEEE
Q psy7830         210 GAGTTEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       210 ~~~~~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ..+..-+.+.+.+.+++|+.++-..
T Consensus       217 t~p~~~i~~~~l~~~~~g~vIIDla  241 (296)
T PRK08306        217 TIPALVLTKEVLSKMPPEALIIDLA  241 (296)
T ss_pred             CCChhhhhHHHHHcCCCCcEEEEEc
Confidence            7766556678888999988776433

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=82.19  E-value=15  Score=35.25  Aligned_cols=90  Identities=19%  Similarity=0.142  Sum_probs=55.0

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC----CC-CCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW----GH-AEG  201 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~----~~-~~~  201 (364)
                      +.++.+||-.|+|. |..+..+++.    .|++++.++...+.+++ +        +..  .++......    .. ...
T Consensus       173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~--------g~~--~~~~~~~~~~~~~~~~~~~  241 (350)
T cd08240         173 LVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA-A--------GAD--VVVNGSDPDAAKRIIKAAG  241 (350)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-h--------CCc--EEecCCCccHHHHHHHHhC
Confidence            34788999887653 4444555554    68889988887777643 2        111  111111000    00 011


Q ss_pred             CCeeEEEEccChHHHHHHHHhccCCCcEEEE
Q psy7830         202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi  232 (364)
                      +.+|+|+.............+.|+++|+++.
T Consensus       242 ~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~  272 (350)
T cd08240         242 GGVDAVIDFVNNSATASLAFDILAKGGKLVL  272 (350)
T ss_pred             CCCcEEEECCCCHHHHHHHHHHhhcCCeEEE
Confidence            2689999765555678888999999999885

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>PLN02702 L-idonate 5-dehydrogenase

Probab=81.99  E-value=7.2  Score=37.88  Aligned_cols=92  Identities=21%  Similarity=0.266  Sum_probs=55.6

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE---cCCCC----CC-
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL---KDARW----GH-  198 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~---~D~~~----~~-  198 (364)
                      +.++.+||-+|+|. |..+..+++.    .|+++|.++...+.+++ +        +.+.+....   .+...    .. 
T Consensus       179 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~--------g~~~~~~~~~~~~~~~~~~~~~~~  249 (364)
T PLN02702        179 IGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQ-L--------GADEIVLVSTNIEDVESEVEEIQK  249 (364)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-h--------CCCEEEecCcccccHHHHHHHHhh
Confidence            57888999997642 4445555554    57889998887776654 2        111111110   11100    00 


Q ss_pred             CCCCCeeEEEEccChHHHHHHHHhccCCCcEEEE
Q psy7830         199 AEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       199 ~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi  232 (364)
                      ...+.+|+|+-...-........+.|+++|+++.
T Consensus       250 ~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~  283 (364)
T PLN02702        250 AMGGGIDVSFDCVGFNKTMSTALEATRAGGKVCL  283 (364)
T ss_pred             hcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            1124689998765545567888899999999764

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=81.95  E-value=3.3  Score=41.18  Aligned_cols=71  Identities=20%  Similarity=0.085  Sum_probs=46.4

Q ss_pred             CEEEEECCCc-cHHHHHH-Hcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC---CCCeeEE
Q psy7830         136 SRVLDIGSGQ-GYMATAK-EWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE---GGPYDVI  207 (364)
Q Consensus       136 ~~VLDiGcGs-G~~a~~l-a~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~---~~~fD~I  207 (364)
                      ++||-||||. |...+.. ++.   +|+..|.+++..+.+.....         .++++...|+.+...-   -..+|+|
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---------~~v~~~~vD~~d~~al~~li~~~d~V   72 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---------GKVEALQVDAADVDALVALIKDFDLV   72 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---------ccceeEEecccChHHHHHHHhcCCEE
Confidence            5799999963 2222222 333   89999999988887766532         3788888888654211   1357999


Q ss_pred             EEccChHH
Q psy7830         208 FFGAGTTE  215 (364)
Q Consensus       208 i~~~~~~~  215 (364)
                      +...+...
T Consensus        73 In~~p~~~   80 (389)
T COG1748          73 INAAPPFV   80 (389)
T ss_pred             EEeCCchh
Confidence            87666543

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=81.85  E-value=2  Score=36.78  Aligned_cols=99  Identities=21%  Similarity=0.187  Sum_probs=51.3

Q ss_pred             HHHHHHhccCC-CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830         123 RCLEQLVDHLQ-NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG  197 (364)
Q Consensus       123 ~~l~~L~~~l~-~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~  197 (364)
                      .++++....+. ...-|||+|-|+|..=-++...    +|+.+|..-..-..+.            .+.-.++.+|+.+.
T Consensus        16 ~~L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~------------P~~~~~ilGdi~~t   83 (160)
T PF12692_consen   16 DCLNWAAAQVAGLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSST------------PPEEDLILGDIRET   83 (160)
T ss_dssp             HHHHHHHHHTTT--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---------------GGGEEES-HHHH
T ss_pred             HHHHHHHHHhcCCCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCC------------CchHheeeccHHHH
Confidence            45666543332 3357999999999887777665    8999997422211110            12234566776543


Q ss_pred             CCC----CCCeeEEEEccCh----------HHHHHHHHhccCCCcEEEEE
Q psy7830         198 HAE----GGPYDVIFFGAGT----------TEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       198 ~~~----~~~fD~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      .+.    ..+.-+++++...          .++.+.+..+|.|||++|-.
T Consensus        84 l~~~~~~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~  133 (160)
T PF12692_consen   84 LPALARFGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSG  133 (160)
T ss_dssp             HHHHHHH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred             hHHHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence            221    2234455554333          34778899999999998843

>PRK10083 putative oxidoreductase; Provisional

Probab=81.84  E-value=9.5  Score=36.40  Aligned_cols=93  Identities=14%  Similarity=0.063  Sum_probs=54.5

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHc--c---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEcCCCCCCC-CCCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEW--L---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILKDARWGHA-EGGP  203 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~--~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~D~~~~~~-~~~~  203 (364)
                      +++|++||=.|+|. |..+..+++  .   .++++|.+++..+.+++.         +.+.+ .....+...... ....
T Consensus       158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~---------Ga~~~i~~~~~~~~~~~~~~g~~  228 (339)
T PRK10083        158 PTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKES---------GADWVINNAQEPLGEALEEKGIK  228 (339)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHh---------CCcEEecCccccHHHHHhcCCCC
Confidence            67899999999653 334444444  2   588899998888777652         11111 111111111011 1123


Q ss_pred             eeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         204 YDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       204 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +|+|+-............+.|+++|+++..
T Consensus       229 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~  258 (339)
T PRK10083        229 PTLIIDAACHPSILEEAVTLASPAARIVLM  258 (339)
T ss_pred             CCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            567776544455677788999999998863

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=81.69  E-value=4.9  Score=40.54  Aligned_cols=85  Identities=12%  Similarity=0.066  Sum_probs=53.1

Q ss_pred             CCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         133 QNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       133 ~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      ..|.+|+-+|+|. |......++.   +|+.+|+++.....+..   .         ..++.  +..+.   ...+|+|+
T Consensus       210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~---~---------G~~v~--~l~ea---l~~aDVVI  272 (425)
T PRK05476        210 IAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM---D---------GFRVM--TMEEA---AELGDIFV  272 (425)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh---c---------CCEec--CHHHH---HhCCCEEE
Confidence            4799999999986 3333333333   99999999876543322   1         11111  22111   13589998


Q ss_pred             EccChHHHHH-HHHhccCCCcEEEEEE
Q psy7830         209 FGAGTTEVSK-TILSQLKPNGRIVAPV  234 (364)
Q Consensus       209 ~~~~~~~l~~-~l~~~LkpGG~Lvi~~  234 (364)
                      ......+++. .....+|+|++++..-
T Consensus       273 ~aTG~~~vI~~~~~~~mK~GailiNvG  299 (425)
T PRK05476        273 TATGNKDVITAEHMEAMKDGAILANIG  299 (425)
T ss_pred             ECCCCHHHHHHHHHhcCCCCCEEEEcC
Confidence            8766566554 7889999999877643

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=81.02  E-value=16  Score=36.39  Aligned_cols=107  Identities=13%  Similarity=0.081  Sum_probs=65.5

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcceEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEG  201 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~  201 (364)
                      ..+++.+.+.... .+||-++=.-|.++..++...++.+--|--.-...++|++.|.   +..+.+++...  ....  .
T Consensus        33 e~ll~~~~~~~~~-~~~~i~nd~fGal~~~l~~~~~~~~~ds~~~~~~~~~n~~~n~---~~~~~~~~~~~--~~~~--~  104 (378)
T PRK15001         33 EYLLQQLDDTEIR-GPVLILNDAFGALSCALAEHKPYSIGDSYISELATRENLRLNG---IDESSVKFLDS--TADY--P  104 (378)
T ss_pred             HHHHHHHhhcccC-CCEEEEcCchhHHHHHHHhCCCCeeehHHHHHHHHHHHHHHcC---CCcccceeecc--cccc--c
Confidence            4455555532222 3799999999999999996533333112223334566777754   33334555432  2222  2


Q ss_pred             CCeeEEEEccC-----hHHHHHHHHhccCCCcEEEEEEcC
Q psy7830         202 GPYDVIFFGAG-----TTEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       202 ~~fD~Ii~~~~-----~~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +.+|+|+.-.+     +++.+..+...|.||+.+++....
T Consensus       105 ~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g~~~  144 (378)
T PRK15001        105 QQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAKA  144 (378)
T ss_pred             CCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEEEec
Confidence            45899987544     356788999999999998754443

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=81.01  E-value=22  Score=34.01  Aligned_cols=93  Identities=22%  Similarity=0.177  Sum_probs=55.1

Q ss_pred             CCCCCEEEEECCC-ccHHHHHHHcc---e-EEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcCCCC---CCCCCC
Q psy7830         132 LQNGSRVLDIGSG-QGYMATAKEWL---S-SVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKDARW---GHAEGG  202 (364)
Q Consensus       132 l~~g~~VLDiGcG-sG~~a~~la~~---~-V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D~~~---~~~~~~  202 (364)
                      ..+|.+||-.|+| .|..++.+++.   + |++++.++...+.+++.         +... +.....+...   ......
T Consensus       159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~---------g~~~~v~~~~~~~~~~l~~~~~~~  229 (340)
T TIGR00692       159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKM---------GATYVVNPFKEDVVKEVADLTDGE  229 (340)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh---------CCcEEEcccccCHHHHHHHhcCCC
Confidence            5678888887764 24444555554   5 88888888777666542         1111 1111111100   011234


Q ss_pred             CeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      .+|+|+-..........+.+.|+++|+++..
T Consensus       230 ~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~  260 (340)
T TIGR00692       230 GVDVFLEMSGAPKALEQGLQAVTPGGRVSLL  260 (340)
T ss_pred             CCCEEEECCCCHHHHHHHHHhhcCCCEEEEE
Confidence            6999987655456678889999999998653

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=80.78  E-value=3.8  Score=34.13  Aligned_cols=87  Identities=15%  Similarity=0.153  Sum_probs=45.5

Q ss_pred             CCCEEEEECCCccHHH-HHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC-CCCeeEEEE
Q psy7830         134 NGSRVLDIGSGQGYMA-TAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE-GGPYDVIFF  209 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a-~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD~Ii~  209 (364)
                      ...+|.|+|-|.=.-. ..|.+.  .|+++|+.+.       ++.         ..+.++..|+.+...+ ....|+|++
T Consensus        13 ~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~-------~a~---------~g~~~v~DDif~P~l~iY~~a~lIYS   76 (127)
T PF03686_consen   13 NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR-------KAP---------EGVNFVVDDIFNPNLEIYEGADLIYS   76 (127)
T ss_dssp             -SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S--------------------STTEE---SSS--HHHHTTEEEEEE
T ss_pred             CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc-------ccc---------cCcceeeecccCCCHHHhcCCcEEEE
Confidence            3449999998875443 344444  9999999987       111         2567888898764322 257899999


Q ss_pred             ccChHHHHHHHHhccCC-CcEEEEEEcC
Q psy7830         210 GAGTTEVSKTILSQLKP-NGRIVAPVGN  236 (364)
Q Consensus       210 ~~~~~~l~~~l~~~Lkp-GG~Lvi~~~~  236 (364)
                      --+-.++.+.+.++-+. |.-+++.-..
T Consensus        77 iRPP~El~~~il~lA~~v~adlii~pL~  104 (127)
T PF03686_consen   77 IRPPPELQPPILELAKKVGADLIIRPLG  104 (127)
T ss_dssp             ES--TTSHHHHHHHHHHHT-EEEEE-BT
T ss_pred             eCCChHHhHHHHHHHHHhCCCEEEECCC
Confidence            88776665555554433 5555554433

; PDB: 2K4M_A.

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=80.39  E-value=4.5  Score=39.01  Aligned_cols=93  Identities=20%  Similarity=0.209  Sum_probs=56.2

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcCCCC-C--CCCCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKDARW-G--HAEGG  202 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D~~~-~--~~~~~  202 (364)
                      +++|.+||-.|+|. |..+..+++.    +|++++.+++..+.+++ +..        +. +.....+... .  .....
T Consensus       170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~-~ga--------~~~i~~~~~~~~~~l~~~~~~~  240 (351)
T cd08233         170 FKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE-LGA--------TIVLDPTEVDVVAEVRKLTGGG  240 (351)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-hCC--------CEEECCCccCHHHHHHHHhCCC
Confidence            67889999988642 3344444444    68889999888877754 211        11 1111111100 0  01123


Q ss_pred             CeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      .+|+|+-............+.|+++|+++..
T Consensus       241 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~  271 (351)
T cd08233         241 GVDVSFDCAGVQATLDTAIDALRPRGTAVNV  271 (351)
T ss_pred             CCCEEEECCCCHHHHHHHHHhccCCCEEEEE
Confidence            5999997765555677888999999997753

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=80.36  E-value=18  Score=29.76  Aligned_cols=87  Identities=16%  Similarity=0.141  Sum_probs=58.2

Q ss_pred             CCCCEEEEECCCcc-HHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC-CCCeeEEE
Q psy7830         133 QNGSRVLDIGSGQG-YMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE-GGPYDVIF  208 (364)
Q Consensus       133 ~~g~~VLDiGcGsG-~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD~Ii  208 (364)
                      ..| +|.|+|-|-= ..+..++++  .|+++|+.+.       +..         ..++++..|+++.... ....|+|+
T Consensus        13 ~~g-kVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~-------~a~---------~g~~~v~DDitnP~~~iY~~A~lIY   75 (129)
T COG1255          13 ARG-KVVEVGIGFFLDVAKRLAERGFDVLATDINEK-------TAP---------EGLRFVVDDITNPNISIYEGADLIY   75 (129)
T ss_pred             cCC-cEEEEccchHHHHHHHHHHcCCcEEEEecccc-------cCc---------ccceEEEccCCCccHHHhhCcccee
Confidence            344 9999997753 234555555  8999999876       111         3688899998764332 25689999


Q ss_pred             EccChHHHHHHHHhccCC-CcEEEEEEcC
Q psy7830         209 FGAGTTEVSKTILSQLKP-NGRIVAPVGN  236 (364)
Q Consensus       209 ~~~~~~~l~~~l~~~Lkp-GG~Lvi~~~~  236 (364)
                      +--+..++...+.++-+. |..+++.-..
T Consensus        76 SiRpppEl~~~ildva~aVga~l~I~pL~  104 (129)
T COG1255          76 SIRPPPELQSAILDVAKAVGAPLYIKPLT  104 (129)
T ss_pred             ecCCCHHHHHHHHHHHHhhCCCEEEEecC
Confidence            998888887766666544 5455554433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	364
1i1n_A	226	Human Protein L-Isoaspartate O-Methyltransferase Wi		4e-23
1r18_A	227	Drosophila Protein Isoaspartyl Methyltransferase Wi		1e-15
2pbf_A	227	Crystal Structure Of A Putative Protein-L-Isoaspart		5e-15
1dl5_A	317	Protein-L-Isoaspartate O-Methyltransferase Length =		7e-11
1jg4_A	235	Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-		1e-09
2yxe_A	215	Crystal Structure Of L-Isoaspartyl Protein Carboxyl		2e-06
3lbf_A	210	Crystal Structure Of Protein L-Isoaspartyl Methyltr		9e-05

>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S- Adenosyl Homocysteine Length = 226

Iteration: 1
 Score =  105 bits (262), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 103/206 (50%), Gaps = 9/206 (4%)
Query: 62  SYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYI 121
           S+++ +  L++  ++   +V E   A  R+ +    P   + D P +   Q  +  P   
Sbjct: 8   SHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNP---YMDSPQSIGFQATISAPHMH 64
Query: 122 ARCLEQLVDHLQNGSRVLDIGSGQGYM-ATAKEWLSSVRQLL----LPETLNNSLKNIKI 176
           A  LE L D L  G++ LD+GSG G + A     +    +++    + E +++S+ N++ 
Sbjct: 65  AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK 124
Query: 177 SRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGN 236
             P LL S  ++ ++ D R G+AE  PYD I  GA    V + ++ QLKP GR++ PVG 
Sbjct: 125 DDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGP 184
Query: 237 V-WRQNLSVIDKGPDGSISSKILRRV 261
               Q L   DK  DGSI  K L  V
Sbjct: 185 AGGNQMLEQYDKLQDGSIKMKPLMGV 210

>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With S-Adenosyl-L- Homocysteine Length = 227

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 88/200 (44%), Gaps = 14/200 (7%)
Query: 65  DFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARC 124
           D +  LK+  ++    V +A     R  +    P+  + D P      V +  P   A  
Sbjct: 18  DLIRQLKDHGVIASDAVAQAMKETDRKHY---SPRNPYMDAPQPIGGGVTISAPHMHAFA 74
Query: 125 LEQLVDHLQNGSRVLDIGSGQGYMAT-------AKEWLSSVRQLLL---PETLNNSLKNI 174
           LE L DHL+ G+R+LD+GSG GY+         AK   +  R + +    E +  S  N+
Sbjct: 75  LEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANL 134
Query: 175 KISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPV 234
                 +L S  L  +  D R G+    PY+ I  GA   +    +++QL   GR++ PV
Sbjct: 135 NTDDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPV 194
Query: 235 G-NVWRQNLSVIDKGPDGSI 253
           G +   Q +   DK  +G +
Sbjct: 195 GPDGGSQYMQQYDKDANGKV 214

>pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O- Methyltransferase Beta-Aspartate Methyltransferase (Pcmt) From Plasmodium Falciparum In Complex With S-Adenosyl-L-Homocysteine Length = 227

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 96/199 (48%), Gaps = 16/199 (8%)
Query: 62  SYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYI 121
           ++   LE LK R +++   V      V R  +I   P   + D P   ++ V +  P   
Sbjct: 11  NHKSLLENLKRRGIIDDDDVYNTMLQVDRGKYIKEIP---YIDTPVYISHGVTISAPHMH 67
Query: 122 ARCLEQLVDHLQNGSRVLDIGSGQGY----MATAKEWLSSVRQLLL-----PETLNNSLK 172
           A  L++L++ L+ GSR +D+GSG GY    MA     L +    ++      + +N SL+
Sbjct: 68  ALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLE 127
Query: 173 NIKISRPDLLQSKTLEFILKDARWGHAEG----GPYDVIFFGAGTTEVSKTILSQLKPNG 228
           NIK  +P+LL+    + I K+    + E     G +D I  GA  +E+ + ++  L  NG
Sbjct: 128 NIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELPEILVDLLAENG 187
Query: 229 RIVAPVGNVWRQNLSVIDK 247
           +++ P+   + Q L  I K
Sbjct: 188 KLIIPIEEDYTQVLYEITK 206

>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase Length = 317

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Query: 118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKIS 177
           PS +A  +E +   L  G RVL+IG G GY A     +   + L++    +  +  I   
Sbjct: 61  PSLMALFMEWV--GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR 118
Query: 178 RPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPV 234
             + L  + + F+  D  +G  E  PYDVIF   G  EV +T  +QLK  GR++ P+
Sbjct: 119 NVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPI 175

>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O- Methyltransferase With S-Adenosylmethionine Length = 235

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 88/186 (47%), Gaps = 17/186 (9%)
Query: 67  LEGLKERKLLNHPRVEEAFYAVRRADFINVK-PKFGFCDIPYAFANQVVMEPPSYIARCL 125
           +E LK   ++    VE AF    R   +  K  K+   D P        +  P  +A  L
Sbjct: 25  VEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIML 84
Query: 126 EQLVDHLQNGSRVLDIGSGQGYMAT-----AKEWLSSVRQLLLPETLNNSLKNIKISRPD 180
           E  + +L+ G  +L++G+G G+ A       K  + ++ ++  PE +  + +N++ +   
Sbjct: 85  E--IANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERI--PELVEFAKRNLERA--- 137
Query: 181 LLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVG--NVW 238
               K +  IL D   G     PYDVI   AG  ++ + ++ QLK  G+++ PVG  ++W
Sbjct: 138 --GVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHLW 195
Query: 239 RQNLSV 244
           ++ L V
Sbjct: 196 QELLEV 201

>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl Methyltranferase Length = 215

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 14/191 (7%)
Query: 66  FLEGLKERKLLNHPRVEEAFYAVRRADFINVKPK-FGFCDIPYAFANQVVMEPPSYIARC 124
            +E L     +   RV +A   V R +F+    K + + D P        +     +   
Sbjct: 10  VIEKLIREGYIKSKRVIDALLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMM 69
Query: 125 LEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLL-----LPETLNNSLKNIKISRP 179
            E L   L+ G +VL+IG+G GY A     +     L+     +PE    + + ++    
Sbjct: 70  CELL--DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLR---- 123
Query: 180 DLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNVWR 239
             L    +  I+ D   G+    PYD I+  A   ++ + ++ QLK  G+++ PVG  + 
Sbjct: 124 -KLGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVGR-YL 181
Query: 240 QNLSVIDKGPD 250
           Q L + +K  D
Sbjct: 182 QRLVLAEKRGD 192

>pdb|3LBF|A Chain A, Crystal Structure Of Protein L-Isoaspartyl Methyltransferase From Escherichia Coli Length = 210

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 22/175 (12%)
Query: 68  EGLKERKLLNHPRVEEAFYAVRRADFINVK-PKFGFCDIPYAFANQVVMEPPSYIARCLE 126
           +G+++ ++LN      A  AV R  F++    +  + +I         +  P  +AR  E
Sbjct: 18  QGIQDEQVLN------ALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARMTE 71
Query: 127 QLVDHLQNGSRVLDIGSGQGY----MATAKEWLSSVRQLL-LPETLNNSLKNIKISRPDL 181
            L   L   SRVL+IG+G GY    +A   + + SV ++  L       LKN+     DL
Sbjct: 72  LL--ELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNL-----DL 124
Query: 182 LQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGN 236
               T      D   G     P+D I   A   E+   +++QL   G +V PVG 
Sbjct: 125 HNVSTRH---GDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGE 176

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	364
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	5e-40
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	1e-39
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	3e-39
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	9e-31
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	3e-30
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	2e-28
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	1e-26
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	4e-26
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	1e-08
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	2e-08
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	3e-07
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	2e-06
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	4e-06
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	1e-05
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	6e-05
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	2e-04
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	3e-04
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	3e-04
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	8e-04

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 Length = 227

 Score =  140 bits (355), Expect = 5e-40
 Identities = 57/213 (26%), Positives = 88/213 (41%), Gaps = 14/213 (6%)

Query: 61  RSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSY 120
            +  D +  LK+  ++    V +A     R  +    P+  + D P      V +  P  
Sbjct: 14  ANNEDLIRQLKDHGVIASDAVAQAMKETDRKHYS---PRNPYMDAPQPIGGGVTISAPHM 70

Query: 121 IARCLEQLVDHLQNGSRVLDIGSGQGY-------MATAKEWLSSVRQL---LLPETLNNS 170
            A  LE L DHL+ G+R+LD+GSG GY          AK   +  R +      E +  S
Sbjct: 71  HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRS 130

Query: 171 LKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRI 230
             N+      +L S  L  +  D R G+    PY+ I  GA   +    +++QL   GR+
Sbjct: 131 KANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRL 190

Query: 231 VAPVGNV-WRQNLSVIDKGPDGSISSKILRRVS 262
           + PVG     Q +   DK  +G +    L  V 
Sbjct: 191 IVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVM 223

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* Length = 226

 Score =  139 bits (352), Expect = 1e-39
 Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 15/211 (7%)

Query: 61  RSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSY 120
            S+++ +  L++  ++   +V E   A  R+ +        + D P +   Q  +  P  
Sbjct: 7   ASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYA---KCNPYMDSPQSIGFQATISAPHM 63

Query: 121 IARCLEQLVDHLQNGSRVLDIGSGQGY----MATAKEWLSSV----RQLLLPETLNNSLK 172
            A  LE L D L  G++ LD+GSG G      A        V          E +++S+ 
Sbjct: 64  HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHI---KELVDDSVN 120

Query: 173 NIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVA 232
           N++   P LL S  ++ ++ D R G+AE  PYD I  GA    V + ++ QLKP GR++ 
Sbjct: 121 NVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLIL 180

Query: 233 PVGNV-WRQNLSVIDKGPDGSISSKILRRVS 262
           PVG     Q L   DK  DGSI  K L  V 
Sbjct: 181 PVGPAGGNQMLEQYDKLQDGSIKMKPLMGVI 211

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} Length = 227

 Score =  138 bits (349), Expect = 3e-39
 Identities = 57/215 (26%), Positives = 99/215 (46%), Gaps = 17/215 (7%)

Query: 61  RSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSY 120
            ++   LE LK R +++   V      V R  +I    +  + D P   ++ V +  P  
Sbjct: 10  NNHKSLLENLKRRGIIDDDDVYNTMLQVDRGKYI---KEIPYIDTPVYISHGVTISAPHM 66

Query: 121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLL---------LPETLNNSL 171
            A  L++L++ L+ GSR +D+GSG GY+        +V +           + + +N SL
Sbjct: 67  HALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSL 126

Query: 172 KNIKISRPDLLQSKTLEFILKDA----RWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPN 227
           +NIK  +P+LL+    + I K+          E G +D I  GA  +E+ + ++  L  N
Sbjct: 127 ENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELPEILVDLLAEN 186

Query: 228 GRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRVS 262
           G+++ P+   + Q L  I K  +G I    L  V 
Sbjct: 187 GKLIIPIEEDYTQVLYEITK-KNGKIIKDRLFDVC 220

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Length = 235

 Score =  116 bits (292), Expect = 9e-31
 Identities = 58/225 (25%), Positives = 94/225 (41%), Gaps = 26/225 (11%)

Query: 46  MYDEDNENEENFFYTRSYADFLEGLKERKLLNHPRVEEAFYAVRRADFI-NVKPKFGFCD 104
           M DE    E+           +E LK   ++    VE AF    R   + +   K+   D
Sbjct: 11  MMDEKELYEKW-------MRTVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHID 63

Query: 105 IPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMAT-----AKEWLSSV- 158
            P        +  P  +A  LE    +L+ G  +L++G+G G+ A       K  + ++ 
Sbjct: 64  EPLPIPAGQTVSAPHMVAIMLEIA--NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIE 121

Query: 159 RQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSK 218
           R    PE +  + +N++         K +  IL D   G     PYDVI   AG  ++ +
Sbjct: 122 RI---PELVEFAKRNLE-----RAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPE 173

Query: 219 TILSQLKPNGRIVAPVGNV-WRQNLSVIDKGPDGSISSKILRRVS 262
            ++ QLK  G+++ PVG+    Q L  + K  DG I  K    V+
Sbjct: 174 PLIEQLKIGGKLIIPVGSYHLWQELLEVRKTKDG-IKIKNHGGVA 217

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Length = 215

 Score =  114 bits (287), Expect = 3e-30
 Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 21/204 (10%)

Query: 68  EGLKERKLLNHPRVEEAFYAVRRADFI-NVKPKFGFCDIPYAFANQVVMEPPSYIARCLE 126
           E L     +   RV +A   V R +F+     ++ + D P        +     +    E
Sbjct: 12  EKLIREGYIKSKRVIDALLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMMCE 71

Query: 127 QLVDHLQNGSRVLDIGSGQGY-------MATAKEWLSSV-RQLLLPETLNNSLKNIKISR 178
            L   L+ G +VL+IG+G GY       +      + S+ R    PE    + + ++   
Sbjct: 72  LL--DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERI---PELAEKAERTLR--- 123

Query: 179 PDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNVW 238
              L    +  I+ D   G+    PYD I+  A   ++ + ++ QLK  G+++ PVG  +
Sbjct: 124 --KLGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVGR-Y 180

Query: 239 RQNLSVIDKGPDGSISSKILRRVS 262
            Q L + +K  D  I  K    V+
Sbjct: 181 LQRLVLAEKRGDE-IIIKDCGPVA 203

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Length = 231

 Score =  110 bits (276), Expect = 2e-28
 Identities = 43/193 (22%), Positives = 73/193 (37%), Gaps = 21/193 (10%)

Query: 78  HPRVEEAFYAVRRADFI-NVKPKFGFCDIPYAF--ANQVVMEPPSYIARCLEQLVDHLQN 134
              + EAF  V R+ F+      + +     A      +     +     L++L   L  
Sbjct: 13  TQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDEL--DLHK 70

Query: 135 GSRVLDIGSGQGYMATAKEWLSS-VRQL----LLPETLNNSLKNIKISRPDLLQSKTLEF 189
           G +VL+IG+G GY       ++  V ++    +  +  N + K        L     ++ 
Sbjct: 71  GQKVLEIGTGIGYYTAL---IAEIVDKVVSVEINEKMYNYASKL-------LSYYNNIKL 120

Query: 190 ILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNVWRQNLSVIDKGP 249
           IL D   G+ E  PYD +   A    +      QLK  G ++ P+G    Q L  + K  
Sbjct: 121 ILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGVGRVQKLYKVIKKG 180

Query: 250 DGSISSKILRRVS 262
           +   S + L  V 
Sbjct: 181 NS-PSLENLGEVM 192

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Length = 210

 Score =  104 bits (261), Expect = 1e-26
 Identities = 50/205 (24%), Positives = 75/205 (36%), Gaps = 23/205 (11%)

Query: 66  FLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFG---FCDIPYAFANQVVMEPPSYIA 122
            L+ L+ + + +  +V  A  AV R  F  V   F    + +I         +  P  +A
Sbjct: 11  LLDQLRAQGIQD-EQVLNALAAVPREKF--VDEAFEQKAWDNIALPIGQGQTISQPYMVA 67

Query: 123 RCLEQLVDHLQNGSRVLDIGSGQGYMAT-----AKEWLSSVRQLLLPETLNNSLKNIKIS 177
           R  E L   L   SRVL+IG+G GY         +   S  R   L       LKN+ + 
Sbjct: 68  RMTELL--ELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLH 125

Query: 178 RPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNV 237
                    +     D   G     P+D I   A   E+   +++QL   G +V PVG  
Sbjct: 126 N--------VSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGEE 177

Query: 238 WRQNLSVIDKGPDGSISSKILRRVS 262
             Q L  + +   G      +  V 
Sbjct: 178 -HQYLKRVRRR-GGEFIIDTVEAVR 200

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317

 Score =  105 bits (264), Expect = 4e-26
 Identities = 46/199 (23%), Positives = 76/199 (38%), Gaps = 25/199 (12%)

Query: 79  PRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYI------ARCLEQLVDHL 132
             + +AF  + R +F+       +        +    E  S        A  +E +   L
Sbjct: 16  DHIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWV--GL 73

Query: 133 QNGSRVLDIGSGQGY-------MATAKEWLSSV-RQLLLPETLNNSLKNIKISRPDLLQS 184
             G RVL+IG G GY       +   K  + SV     + E    +++ + I        
Sbjct: 74  DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN------ 127

Query: 185 KTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGN-VWRQNLS 243
             + F+  D  +G  E  PYDVIF   G  EV +T  +QLK  GR++ P+   + R+  +
Sbjct: 128 --VIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPA 185

Query: 244 VIDKGPDGSISSKILRRVS 262
            + K  D  +         
Sbjct: 186 FLFKKKDPYLVGNYKLETR 204

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 5/105 (4%)

Query: 132 LQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL 191
                  +D+G G G +    E    VR++   +    ++   +++         +  + 
Sbjct: 31  PGKNDVAVDVGCGTGGVTL--ELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLME 88

Query: 192 KDARWGHAEGGPYDVIFFGAG---TTEVSKTILSQLKPNGRIVAP 233
            DA     +    D+   G       E+ + I  +LKP GRI+  
Sbjct: 89  GDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVT 133

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Length = 248

 Score = 53.8 bits (129), Expect = 2e-08
 Identities = 22/133 (16%), Positives = 41/133 (30%), Gaps = 5/133 (3%)

Query: 131 HLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFI 190
           +L    RVL+ G+G G +           ++   E +    K  + +       K ++F 
Sbjct: 88  NLNKEKRVLEFGTGSGALLAV--LSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFF 145

Query: 191 LKDARWGHAEGGPYDVIFFGAGT-TEVSKTILSQLKPNGRIVA--PVGNVWRQNLSVIDK 247
             D +      G +   F          + +   L     +    P  N   + L  I+ 
Sbjct: 146 NVDFKDAEVPEGIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIEN 205

Query: 248 GPDGSISSKILRR 260
                   +IL R
Sbjct: 206 YFGNLEVVEILHR 218

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 33/136 (24%), Positives = 44/136 (32%), Gaps = 20/136 (14%)

Query: 108 AFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLL---- 163
           + A    +      A  +  L    +    + DIG G G +A   EWL S  Q       
Sbjct: 1   SNATDGQLTKQHVRALAISAL--APKPHETLWDIGGGSGSIAI--EWLRSTPQTTAVCFE 56

Query: 164 --PETLNNSLKNIKISRPDLLQSKTLEFILKDAR--WGHAEGGPYDVIFFGAGTT--EVS 217
              E     L N        L       + + A   +      P DVIF G G T   V 
Sbjct: 57  ISEERRERILSNA-----INLGVSDRIAVQQGAPRAFDDVPDNP-DVIFIGGGLTAPGVF 110

Query: 218 KTILSQLKPNGRIVAP 233
                +L   GR+VA 
Sbjct: 111 AAAWKRLPVGGRLVAN 126

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 5/128 (3%)

Query: 108 AFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETL 167
           AFA+   +      A  L  L    + G  + DIG G G ++   EW  +  + +  E  
Sbjct: 31  AFAHDGQITKSPMRALTLAAL--APRRGELLWDIGGGSGSVSV--EWCLAGGRAITIEPR 86

Query: 168 NNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTE-VSKTILSQLKP 226
            + ++NI+ +      S  +  +   A    A+    + +F G G ++ +   +   L P
Sbjct: 87  ADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGGSQALYDRLWEWLAP 146

Query: 227 NGRIVAPV 234
             RIVA  
Sbjct: 147 GTRIVANA 154

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204

 Score = 46.1 bits (109), Expect = 4e-06
 Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 16/113 (14%)

Query: 131 HLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLL------PETLNNSLKNIKISRPDLLQS 184
            LQ+   + DIG+G   ++   E  + +    +      P+ L     N          +
Sbjct: 37  RLQDDLVMWDIGAGSASVSI--EASNLMPNGRIFALERNPQYLGFIRDN-----LKKFVA 89

Query: 185 KTLEFILKDARWGHAEGGPYDVIFFGAG---TTEVSKTILSQLKPNGRIVAPV 234
           + +  +   A  G  +    D +F G       E+   +  +LK  G IV   
Sbjct: 90  RNVTLVEAFAPEGLDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNA 142

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Length = 258

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 4/136 (2%)

Query: 104 DIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATA-KEWLSSVRQLL 162
           +             P   +  +  L   L  G RVL+ G+G G +       +     + 
Sbjct: 68  EYLLHMKRSATPTYPKDASAMVTLL--DLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVE 125

Query: 163 LPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGT-TEVSKTIL 221
             E   + L   + +     Q + + F L        E   YD +        +V +   
Sbjct: 126 SYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALDLMEPWKVLEKAA 185

Query: 222 SQLKPNGRIVAPVGNV 237
             LKP+  +VA + N+
Sbjct: 186 LALKPDRFLVAYLPNI 201

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 17/128 (13%)

Query: 119 SYIARCLEQLVDHL--QNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKI 176
           S++ +  E L+  L  Q G  +LD+G G G +   ++   S  ++L     +N+   I+ 
Sbjct: 40  SFVWQYGEDLLQLLNPQPGEFILDLGCGTGQL--TEKIAQSGAEVLG---TDNAATMIEK 94

Query: 177 SRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAG------TTEVSKTILSQLKPNGRI 230
           +R +      L F + DAR    +  P D +F  A             +I   LK  GR 
Sbjct: 95  ARQNYPH---LHFDVADARNFRVD-KPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRF 150

Query: 231 VAPVGNVW 238
           VA  G   
Sbjct: 151 VAEFGGKG 158

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 32/194 (16%), Positives = 57/194 (29%), Gaps = 25/194 (12%)

Query: 65  DFLEGLKERKLLNHPRVEEAFYAVRRADFINVKP-------KFGFCDIPYAFANQVVMEP 117
             ++    + +L+   +  A   +R+               +    D P+         P
Sbjct: 46  STIDFESAKHILDDAEMNHALSLIRKFYVNLGMKLEMEKAQEVIESDSPWETLRSFYFYP 105

Query: 118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQL------LLPETLNNSL 171
                   E  +   + G R + IG G   +      LS V  +      + P+    S 
Sbjct: 106 RYLELLKNEAALGRFRRGERAVFIGGGPLPLTGI--LLSHVYGMRVNVVEIEPDIAELSR 163

Query: 172 KNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTE---VSKTILSQLKPNG 228
           K I+    D      +  I  D      +G  +DV+   A       V + I   +    
Sbjct: 164 KVIEGLGVD-----GVNVITGDET--VIDGLEFDVLMVAALAEPKRRVFRNIHRYVDTET 216

Query: 229 RIVAPVGNVWRQNL 242
           RI+       R  L
Sbjct: 217 RIIYRTYTGMRAIL 230

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 25/110 (22%), Positives = 38/110 (34%), Gaps = 22/110 (20%)

Query: 132 LQNGSRVLDIGSGQGYMATAKEWLSSVRQLL----LPETLNNSLKNIKISRPDLLQSKTL 187
           L     V+D+G G G M    E     + +     L   +  + +N+          K  
Sbjct: 33  LNKDDVVVDVGCGSGGMTV--EIAKRCKFVYAIDYLDGAIEVTKQNLA-----KFNIKNC 85

Query: 188 EFILKDARWGHAEGG----PYDVIFFGAGTTEVSKTI-LSQLKPNGRIVA 232
           + I      G AE       ++  F G GT  + K I +   K    IVA
Sbjct: 86  QIIK-----GRAEDVLDKLEFNKAFIG-GTKNIEKIIEILDKKKINHIVA 129

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 22/131 (16%), Positives = 40/131 (30%), Gaps = 10/131 (7%)

Query: 107 YAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPET 166
           Y      V+  P         L   L   +RVL+ G G G    A  +     +      
Sbjct: 21  YRHPWARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGP--DAARFGPQAARWAA--- 75

Query: 167 LNNSLKNIKISRPDLLQSKTLEFILKDA--RWGHAEGGPYDVIFFGAGTTEVSKTILSQL 224
            + S + +K++R     +   +    +         G P+ +I    G T V   +    
Sbjct: 76  YDFSPELLKLARA---NAPHADVYEWNGKGELPAGLGAPFGLIVSRRGPTSVILRLPELA 132

Query: 225 KPNGRIVAPVG 235
            P+   +    
Sbjct: 133 APDAHFLYVGP 143

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 39.8 bits (93), Expect = 8e-04
 Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 30/127 (23%)

Query: 121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKISRPD 180
            A     L   ++ G+R+LD+GSG G M                     +   I +S   
Sbjct: 25  YATLGRVL--RMKPGTRILDLGSGSGEML-----------CTWARDHGITGTGIDMSSLF 71

Query: 181 LLQSKT----------LEFILKDARWGHAEGGPYDVIF-FGA-----GTTEVSKTILSQL 224
             Q+K           + FI  DA  G+      DV    GA     G     + +   L
Sbjct: 72  TAQAKRRAEELGVSERVHFIHNDAA-GYVANEKCDVAACVGATWIAGGFAGAEELLAQSL 130

Query: 225 KPNGRIV 231
           KP G ++
Sbjct: 131 KPGGIML 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	364
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.95
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.94
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.94
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.93
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.93
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.92
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.88
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.88
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.66
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.66
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.64
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.63
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.63
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.62
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.62
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.61
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.61
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.61
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.6
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.6
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.59
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.59
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.58
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.58
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.58
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.57
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.56
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.56
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.56
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.55
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.55
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.55
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.55
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.55
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.55
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.54
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.54
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.54
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.54
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.54
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.54
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.54
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.54
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.54
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.54
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.54
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.53
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.53
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.52
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.52
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.52
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.52
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.52
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.52
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.52
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.52
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.52
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.52
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.51
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.51
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.51
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.51
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.51
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.5
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.5
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.5
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.5
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.5
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.5
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.49
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.49
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.49
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.49
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.49
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.49
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.49
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.49
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.49
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.49
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.49
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.48
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.48
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.48
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.48
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.48
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.48
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.48
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.48
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.48
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.48
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.48
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.48
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.48
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.48
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.48
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.48
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.47
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.47
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.47
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.47
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.47
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.47
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.47
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.47
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.47
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.47
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.46
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.46
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.46
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.46
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.46
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.46
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.46
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.45
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.45
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.45
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.45
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.45
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.45
3ocj_A	305	Putative exported protein; structural genomics, PS	99.45
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.45
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.45
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.44
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.44
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.44
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.44
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.44
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.44
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.43
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.43
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.43
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.43
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.43
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.43
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.43
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.43
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.43
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.42
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.42
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.42
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.42
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.42
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.42
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.41
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.41
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.41
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.4
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.4
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.4
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.4
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.4
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.4
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.4
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.39
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.39
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.39
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.39
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.39
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.39
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.38
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.38
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.38
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.38
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.37
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.37
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.37
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.37
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.36
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.36
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.35
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.34
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.34
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.33
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.33
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.33
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.33
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.32
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.32
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.31
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.31
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.31
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.31
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.31
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.31
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.31
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.3
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.3
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.3
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.29
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.28
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.28
2o07_A	304	Spermidine synthase; structural genomics, structur	99.28
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.28
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.27
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.27
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.27
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.27
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.26
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.26
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.26
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.26
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.26
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.25
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.25
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.25
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.24
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.24
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.24
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.24
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.24
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.24
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.23
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.23
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.23
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.23
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.23
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.22
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.22
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.21
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.21
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.21
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.21
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.21
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.21
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.2
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.2
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.2
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.19
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.19
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.18
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.18
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.17
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.17
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.16
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.15
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.14
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.14
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.12
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.11
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.11
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.1
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.09
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.09
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.09
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	99.08
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.07
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.07
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.06
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.05
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.05
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.04
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.04
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.04
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.03
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.03
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.03
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	99.02
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.01
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.98
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.96
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.95
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.95
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.94
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.94
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.93
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.9
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.9
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.89
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.88
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.88
3lkd_A	542	Type I restriction-modification system methyltrans	98.85
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.83
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.81
3khk_A	544	Type I restriction-modification system methylation	98.79
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.75
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.75
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.7
3ufb_A	530	Type I restriction-modification system methyltran	98.47
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.47
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.46
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.36
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.34
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.33
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.3
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.29
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.26
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.26
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.19
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.14
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.14
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.96
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.96
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.74
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.74
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.72
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.66
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.65
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.51
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.49
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.39
2oo3_A	283	Protein involved in catabolism of external DNA; st	97.23
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	96.84
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.83
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	96.81
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.79
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.78
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.74
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.51
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	96.45
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.44
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	96.43
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	96.42
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.28
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.26
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	96.25
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.24
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.2
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.11
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	96.08
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.04
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.04
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.96
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	95.9
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.71
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.65
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	95.63
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.63
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	95.61
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	95.54
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	95.5
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	95.47
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	95.44
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.44
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	95.43
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.42
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	95.38
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	95.35
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	95.32
3gms_A	340	Putative NADPH:quinone reductase; structural genom	95.25
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	95.24
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	95.14
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	95.08
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	95.07
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	95.04
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	95.04
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	94.99
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	94.86
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	94.83
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	94.8
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	94.76
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	94.68
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	94.66
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	94.64
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	94.61
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	94.55
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	94.53
3me5_A	482	Cytosine-specific methyltransferase; structural ge	94.47
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	94.41
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	94.31
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	94.23
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	94.19
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	94.12
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	93.95
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	93.95
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	93.61
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	93.5
4eye_A	342	Probable oxidoreductase; structural genomics, niai	93.44
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	93.09
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	92.85
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	92.84
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	92.66
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	92.63
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	92.54
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	92.48
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	92.39
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	91.95
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	91.85
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	91.63
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	91.4
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	90.66
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	90.54
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	90.46
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	90.31
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	90.3
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	90.12
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	90.07
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	89.98
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	89.94
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	89.8
2zig_A	297	TTHA0409, putative modification methylase; methylt	89.55
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	89.16
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	89.05
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	88.65
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	88.64
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	88.43
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	88.29
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	88.02
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	87.73
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	87.61
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	86.08
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	86.06
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	86.04
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	85.51
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	84.92
1id1_A	153	Putative potassium channel protein; RCK domain, E.	84.7
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	84.59
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	84.27
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	84.19
3c85_A	183	Putative glutathione-regulated potassium-efflux S	83.93
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	83.69
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	83.67
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	83.36
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	83.19
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	83.09
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	82.94
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	82.41
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	81.19
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	81.04
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	80.28
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	80.06

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.95  E-value=6.1e-27  Score=212.97  Aligned_cols=198  Identities=27%  Similarity=0.409  Sum_probs=176.4

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCccccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEE
Q psy7830          61 RSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLD  140 (364)
Q Consensus        61 ~~~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~~~~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLD  140 (364)
                      .+++.|+++|.+.|.+.++.+.++|..++|+.|+|..   +|.|.+++++.++++++|.+++.+++.+..+++++.+|||
T Consensus        14 ~~~~~l~~~l~~~~~~~~~~~~~a~~~~~r~~f~~~~---~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~VLd   90 (227)
T 1r18_A           14 ANNEDLIRQLKDHGVIASDAVAQAMKETDRKHYSPRN---PYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKPGARILD   90 (227)
T ss_dssp             SSHHHHHHHHHHTTSCCCHHHHHHHHTSCGGGTCSSC---TTBSSCEEEETTEEECCHHHHHHHHHHTTTTCCTTCEEEE
T ss_pred             cHHHHHHHHHHhcCCCCCHHHHHHHHhCCHHHcCCcc---cccCCCcccCCCCccCChHHHHHHHHHHHhhCCCCCEEEE
Confidence            3577899999999988999999999999999999987   9999999999999999999999999999756789999999


Q ss_pred             ECCCccHHHHHHHcc----------eEEEEeCCHHHHHHHHHHHHhcCCCCCC-----CCCEEEEEcCCCCCCCCCCCee
Q psy7830         141 IGSGQGYMATAKEWL----------SSVRQLLLPETLNNSLKNIKISRPDLLQ-----SKTLEFILKDARWGHAEGGPYD  205 (364)
Q Consensus       141 iGcGsG~~a~~la~~----------~V~~vDis~~~l~~a~~~~~~~~~~~l~-----~~~v~~~~~D~~~~~~~~~~fD  205 (364)
                      +|||+|+++..+++.          +|+++|+++.+++.+++++..     .+     ..++++..+|+.......++||
T Consensus        91 iG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-----~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  165 (227)
T 1r18_A           91 VGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNT-----DDRSMLDSGQLLIVEGDGRKGYPPNAPYN  165 (227)
T ss_dssp             ESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHH-----HHHHHHHHTSEEEEESCGGGCCGGGCSEE
T ss_pred             ECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHh-----cCccccCCCceEEEECCcccCCCcCCCcc
Confidence            999999999988773          599999999999999999876     11     2589999999987444346899


Q ss_pred             EEEEccChHHHHHHHHhccCCCcEEEEEEcCC-CcceEEEEEecCCCceeEEEeeceeEEec
Q psy7830         206 VIFFGAGTTEVSKTILSQLKPNGRIVAPVGNV-WRQNLSVIDKGPDGSISSKILRRVSSDFL  266 (364)
Q Consensus       206 ~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~~~~-~~~~l~~~~~~~~g~~~~~~l~~~~f~~l  266 (364)
                      +|+++..++++++.+.++|||||+|+++++.. ..+.+..+.+..++.+..+.++.+.|+|+
T Consensus       166 ~I~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~p~  227 (227)
T 1r18_A          166 AIHVGAAAPDTPTELINQLASGGRLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVMYVPL  227 (227)
T ss_dssp             EEEECSCBSSCCHHHHHTEEEEEEEEEEESCSSSCEEEEEEEECTTSCEEEEEEEEECCCCC
T ss_pred             EEEECCchHHHHHHHHHHhcCCCEEEEEEecCCCceEEEEEEEcCCCcEEEEEeccEEEeeC
Confidence            99999999999999999999999999999874 47888899998888899999999999885

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.94  E-value=6.4e-26  Score=203.12  Aligned_cols=198  Identities=24%  Similarity=0.331  Sum_probs=174.8

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCcc-ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEE
Q psy7830          63 YADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPK-FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDI  141 (364)
Q Consensus        63 ~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~~~-~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDi  141 (364)
                      .+.|+++|...| +.++.+.++|..++|+.|+|.... ..|.+..++++.+.++++|.+++.+++.+.  +.++.+|||+
T Consensus         8 ~~~~~~~l~~~g-v~~~~~~~~~~~~~r~~f~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~vLdi   84 (210)
T 3lbf_A            8 VQALLDQLRAQG-IQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARMTELLE--LTPQSRVLEI   84 (210)
T ss_dssp             HHHHHHHHHHTT-CCCHHHHHHHHHSCGGGGSCGGGGGGTTSSSCEECTTSCEECCHHHHHHHHHHTT--CCTTCEEEEE
T ss_pred             HHHHHHHHHHcC-CCCHHHHHHHHhCCHHHcCCcchhhhccCCCccccCCCCEeCCHHHHHHHHHhcC--CCCCCEEEEE
Confidence            456788888887 679999999999999999998654 789999999999999999999999999987  6889999999


Q ss_pred             CCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChHHHHHH
Q psy7830         142 GSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKT  219 (364)
Q Consensus       142 GcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~l~~~  219 (364)
                      |||+|+++..+++.  +|+++|+++.+++.+++++..     .+.+++++..+|+.......++||+|+++..++++++.
T Consensus        85 G~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~-----~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~  159 (210)
T 3lbf_A           85 GTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKN-----LDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTA  159 (210)
T ss_dssp             CCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHH-----TTCCSEEEEESCGGGCCGGGCCEEEEEESSBCSSCCTH
T ss_pred             cCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHH-----cCCCceEEEECCcccCCccCCCccEEEEccchhhhhHH
Confidence            99999999999987  999999999999999999987     33468999999998766556789999999999999899


Q ss_pred             HHhccCCCcEEEEEEcCCCcceEEEEEecCCCceeEEEeeceeEEeccCcc
Q psy7830         220 ILSQLKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRVSSDFLCNLE  270 (364)
Q Consensus       220 l~~~LkpGG~Lvi~~~~~~~~~l~~~~~~~~g~~~~~~l~~~~f~~l~~~~  270 (364)
                      +.++|||||++++++++ ..+.+..+.+. ++.+..+.+..+.|+|+.+..
T Consensus       160 ~~~~L~pgG~lv~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~f~pl~~~~  208 (210)
T 3lbf_A          160 LMTQLDEGGILVLPVGE-EHQYLKRVRRR-GGEFIIDTVEAVRFVPLVKGE  208 (210)
T ss_dssp             HHHTEEEEEEEEEEECS-SSCEEEEEEEE-TTEEEEEEEEECCCCBCCCSS
T ss_pred             HHHhcccCcEEEEEEcC-CceEEEEEEEc-CCeEEEEEeccEEEEEccCcc
Confidence            99999999999999998 56777777775 556888899999999998653

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.94  E-value=3.5e-26  Score=207.49  Aligned_cols=204  Identities=28%  Similarity=0.439  Sum_probs=176.3

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCccccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEE
Q psy7830          61 RSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLD  140 (364)
Q Consensus        61 ~~~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~~~~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLD  140 (364)
                      .+++.|+++|.+.|.+.++.+.++|..++|+.|+|..   +|.|.++.++.++++++|.+.+.+++.+..+++++.+|||
T Consensus        10 ~~~~~~~~~l~~~~~~~~~~v~~~~~~~~r~~f~p~~---~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~VLd   86 (227)
T 2pbf_A           10 NNHKSLLENLKRRGIIDDDDVYNTMLQVDRGKYIKEI---PYIDTPVYISHGVTISAPHMHALSLKRLINVLKPGSRAID   86 (227)
T ss_dssp             CCHHHHHHHHHHTTSCCCHHHHHHHHTSCGGGTCSSS---TTSSSCEEEETTEEECCHHHHHHHHHHHTTTSCTTCEEEE
T ss_pred             hhHHHHHHHHHhcCCcCCHHHHHHHHhCCHHHcCCcc---cCCCCccccCCCCccCChHHHHHHHHHHHhhCCCCCEEEE
Confidence            3578899999999988999999999999999999987   8999999999999999999999999999655789999999


Q ss_pred             ECCCccHHHHHHHcc---------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC----CCCCCeeEE
Q psy7830         141 IGSGQGYMATAKEWL---------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH----AEGGPYDVI  207 (364)
Q Consensus       141 iGcGsG~~a~~la~~---------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~----~~~~~fD~I  207 (364)
                      +|||+|+++..+++.         +|+++|+++.+++.|++++....-..+...+++++.+|+....    ...++||+|
T Consensus        87 iG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~I  166 (227)
T 2pbf_A           87 VGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELGLFDAI  166 (227)
T ss_dssp             ESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHHHCCEEEE
T ss_pred             ECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCccCCCcCEE
Confidence            999999999888753         7999999999999999998772100001358999999998765    445789999


Q ss_pred             EEccChHHHHHHHHhccCCCcEEEEEEcCCCcceEEEEEecCCCceeEEEeeceeEEeccC
Q psy7830         208 FFGAGTTEVSKTILSQLKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRVSSDFLCN  268 (364)
Q Consensus       208 i~~~~~~~l~~~l~~~LkpGG~Lvi~~~~~~~~~l~~~~~~~~g~~~~~~l~~~~f~~l~~  268 (364)
                      +++..++++++.+.++|||||+++++++....+.+..+.+ .++.+..+.++.+.|+|+.+
T Consensus       167 ~~~~~~~~~~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~pl~~  226 (227)
T 2pbf_A          167 HVGASASELPEILVDLLAENGKLIIPIEEDYTQVLYEITK-KNGKIIKDRLFDVCFVSLKK  226 (227)
T ss_dssp             EECSBBSSCCHHHHHHEEEEEEEEEEEEETTEEEEEEEEC-SCC-CEEEEEEEECCCBCCC
T ss_pred             EECCchHHHHHHHHHhcCCCcEEEEEEccCCceEEEEEEE-eCCeEEEEEeccEEEEeccC
Confidence            9999999999999999999999999998766778888888 67779999999999999874

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.93  E-value=6.2e-25  Score=200.85  Aligned_cols=204  Identities=25%  Similarity=0.344  Sum_probs=177.9

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCcc-ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEE
Q psy7830          60 TRSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPK-FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRV  138 (364)
Q Consensus        60 ~~~~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~~~-~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~V  138 (364)
                      ...++.|+++|.+.+.+.++.+.++|..++|+.|+|..+. ..|.+.+++++.+..+++|.+.+.+++.+.  +.++.+|
T Consensus        18 ~~~~~~l~~~l~~~~~~~~~~~~~a~~~v~r~~f~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~v   95 (235)
T 1jg1_A           18 YEKWMRTVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIAN--LKPGMNI   95 (235)
T ss_dssp             HHHHHHHHHHHHHTTSCCSHHHHHHHHHSCGGGGSCGGGGGGTTSSSCEECSTTCEECCHHHHHHHHHHHT--CCTTCCE
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHhCCHhhhCCchhhhcCccCCCcccCCCceeccHHHHHHHHHhcC--CCCCCEE
Confidence            3467889999887788899999999999999999998765 789999999999999999999999999986  7889999


Q ss_pred             EEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChHH
Q psy7830         139 LDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTE  215 (364)
Q Consensus       139 LDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~  215 (364)
                      ||+|||+|+++..+++.   +|+++|+++.+++.|++++..     .+..++++..+|+........+||+|+++..+++
T Consensus        96 LdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~-----~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~  170 (235)
T 1jg1_A           96 LEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLER-----AGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPK  170 (235)
T ss_dssp             EEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHH-----TTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSS
T ss_pred             EEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHH-----cCCCCcEEEECCcccCCCCCCCccEEEECCcHHH
Confidence            99999999999999886   899999999999999999987     3346799999997443333346999999999998


Q ss_pred             HHHHHHhccCCCcEEEEEEcCCCc-ceEEEEEecCCCceeEEEeeceeEEeccCccc
Q psy7830         216 VSKTILSQLKPNGRIVAPVGNVWR-QNLSVIDKGPDGSISSKILRRVSSDFLCNLEY  271 (364)
Q Consensus       216 l~~~l~~~LkpGG~Lvi~~~~~~~-~~l~~~~~~~~g~~~~~~l~~~~f~~l~~~~~  271 (364)
                      +++.+.+.|||||++++++++... +.+..+.+. ++.+..+.+..+.|+|+.....
T Consensus       171 ~~~~~~~~L~pgG~lvi~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~f~p~~~~~~  226 (235)
T 1jg1_A          171 IPEPLIEQLKIGGKLIIPVGSYHLWQELLEVRKT-KDGIKIKNHGGVAFVPLIGEYG  226 (235)
T ss_dssp             CCHHHHHTEEEEEEEEEEECSSSSCEEEEEEEEE-TTEEEEEEEEEECCCBCBSTTS
T ss_pred             HHHHHHHhcCCCcEEEEEEecCCCccEEEEEEEe-CCeEEEEEeccEEEEEccCCCc
Confidence            889999999999999999998775 788888874 6678889999999999987654

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.93  E-value=1e-24  Score=197.63  Aligned_cols=205  Identities=31%  Similarity=0.502  Sum_probs=176.0

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCccccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEE
Q psy7830          62 SYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDI  141 (364)
Q Consensus        62 ~~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~~~~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDi  141 (364)
                      ++++|+++|.+.|.+.++.+.++|..++|+.|+|..   .|.+....++.+..+++|.+.+.+++.+..+++++.+|||+
T Consensus         8 ~~~~l~~~l~~~g~~~~~~~~~a~~~~~r~~f~~~~---~y~~~~~~~~~~~~~~~p~~~~~~l~~l~~~~~~~~~vLDi   84 (226)
T 1i1n_A            8 SHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCN---PYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDV   84 (226)
T ss_dssp             SHHHHHHHHHHTTSCCSHHHHHHHHTSCGGGTCSSC---TTSSSCEEEETTEEECCHHHHHHHHHHTTTTSCTTCEEEEE
T ss_pred             hHHHHHHHHHHcCCcCCHHHHHHHHhCCHHHcCCCc---cCCCCccccCCCceecCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence            567899999999988899999999999999999876   89999999999999999999999999987667899999999


Q ss_pred             CCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChHHH
Q psy7830         142 GSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEV  216 (364)
Q Consensus       142 GcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~l  216 (364)
                      |||+|+.+..+++.     +|+++|+++.+++.+++++.......++.+++++..+|+.......++||+|+++..++++
T Consensus        85 G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~  164 (226)
T 1i1n_A           85 GSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVV  164 (226)
T ss_dssp             TCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEECSBBSSC
T ss_pred             cCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEEEECCchHHH
Confidence            99999999988864     8999999999999999998762100001258999999987655445789999999999999


Q ss_pred             HHHHHhccCCCcEEEEEEcCCC-cceEEEEEecCCCceeEEEeeceeEEeccCc
Q psy7830         217 SKTILSQLKPNGRIVAPVGNVW-RQNLSVIDKGPDGSISSKILRRVSSDFLCNL  269 (364)
Q Consensus       217 ~~~l~~~LkpGG~Lvi~~~~~~-~~~l~~~~~~~~g~~~~~~l~~~~f~~l~~~  269 (364)
                      ++.+.++|||||++++++.+.. .+.+..+.+..++.+..+.++.+.|+|+...
T Consensus       165 ~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~  218 (226)
T 1i1n_A          165 PQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDK  218 (226)
T ss_dssp             CHHHHHTEEEEEEEEEEESCTTSCEEEEEEEECTTSCEEEEEEEEECCCBCCCH
T ss_pred             HHHHHHhcCCCcEEEEEEecCCCceEEEEEEEcCCCcEEEEEcCceEEEeccCC
Confidence            9999999999999999998765 4555667777788899899999999999875

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.92  E-value=2.9e-24  Score=193.04  Aligned_cols=200  Identities=25%  Similarity=0.371  Sum_probs=172.6

Q ss_pred             HHHHHHHHHHH-HHcCCCCCHHHHHHHHhCCCCCccCCCcc-ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCE
Q psy7830          60 TRSYADFLEGL-KERKLLNHPRVEEAFYAVRRADFINVKPK-FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSR  137 (364)
Q Consensus        60 ~~~~~~l~~~l-~~~~~~~~~~~~~a~~~v~R~~~~p~~~~-~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~  137 (364)
                      ...++.|++++ ...+ +.++.+.++|..++|+.|+|.... .+|.+..++++.+.++++|.+.+.+++.+.  +.++.+
T Consensus         4 ~~~~~~~~~~l~~~~~-~~~~~v~~a~~~~~r~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~   80 (215)
T 2yxe_A            4 EEQKKAVIEKLIREGY-IKSKRVIDALLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMMCELLD--LKPGMK   80 (215)
T ss_dssp             HHHHHHHHHHHHHHTS-CCCHHHHHHHHHSCGGGGSCGGGGGGTTSCSCEEEETTEEECCHHHHHHHHHHTT--CCTTCE
T ss_pred             HHHHHHHHHHhHHhcC-CCCHHHHHHHHhCCHHHcCCchhhhhcccCCCccCCCCcEeCcHHHHHHHHHhhC--CCCCCE
Confidence            34677899998 5555 889999999999999999987655 679999999999999999999999999886  788999


Q ss_pred             EEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccC
Q psy7830         138 VLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAG  212 (364)
Q Consensus       138 VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~  212 (364)
                      |||+|||+|.++..+++.     +|+++|+++.+++.+++++..     .+.+++++..+|+.......++||+|+++..
T Consensus        81 vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-----~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~  155 (215)
T 2yxe_A           81 VLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK-----LGYDNVIVIVGDGTLGYEPLAPYDRIYTTAA  155 (215)
T ss_dssp             EEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH-----HTCTTEEEEESCGGGCCGGGCCEEEEEESSB
T ss_pred             EEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-----cCCCCeEEEECCcccCCCCCCCeeEEEECCc
Confidence            999999999999988875     799999999999999999877     2345799999998654443568999999999


Q ss_pred             hHHHHHHHHhccCCCcEEEEEEcCCCcceEEEEEecCCCceeEEEeeceeEEeccCc
Q psy7830         213 TTEVSKTILSQLKPNGRIVAPVGNVWRQNLSVIDKGPDGSISSKILRRVSSDFLCNL  269 (364)
Q Consensus       213 ~~~l~~~l~~~LkpGG~Lvi~~~~~~~~~l~~~~~~~~g~~~~~~l~~~~f~~l~~~  269 (364)
                      ++++.+.+.++|||||+++++++... +.+..+.+.. +.+..+.++.+.|+|+...
T Consensus       156 ~~~~~~~~~~~L~pgG~lv~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~  210 (215)
T 2yxe_A          156 GPKIPEPLIRQLKDGGKLLMPVGRYL-QRLVLAEKRG-DEIIIKDCGPVAFVPLVGK  210 (215)
T ss_dssp             BSSCCHHHHHTEEEEEEEEEEESSSS-EEEEEEEEET-TEEEEEEEEEECCCBCBST
T ss_pred             hHHHHHHHHHHcCCCcEEEEEECCCC-cEEEEEEEeC-CEEEEEEeccEEEEecccc
Confidence            99988999999999999999999887 8888888763 4688888999999998755

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.88  E-value=4e-22  Score=180.92  Aligned_cols=182  Identities=24%  Similarity=0.297  Sum_probs=156.4

Q ss_pred             CHHHHHHHHhCCCCCccCCCcc-cccc--CCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHc
Q psy7830          78 HPRVEEAFYAVRRADFINVKPK-FGFC--DIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEW  154 (364)
Q Consensus        78 ~~~~~~a~~~v~R~~~~p~~~~-~~y~--d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~  154 (364)
                      ++.+.++|..++|+.|+|..+. .+|.  |..++++.++..+.|.++..+++.+.  +.++.+|||+|||+|.++..+++
T Consensus        13 ~~~v~~a~~~v~r~~f~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~   90 (231)
T 1vbf_A           13 TQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDELD--LHKGQKVLEIGTGIGYYTALIAE   90 (231)
T ss_dssp             CHHHHHHHHHSCHHHHSCGGGGGGSSSSTTCCEEEETTEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHH
T ss_pred             CHHHHHHHHhCCHHHcCCcchhhhccccCCCceeeCCCCccCCHHHHHHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHH
Confidence            8999999999999999987765 7898  99999999999999999999999886  68899999999999999999988


Q ss_pred             c--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChHHHHHHHHhccCCCcEEEE
Q psy7830         155 L--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       155 ~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi  232 (364)
                      .  +|+++|+++.+++.+++++..     .+  +++++.+|+.......++||+|+++..++++...+.++|||||++++
T Consensus        91 ~~~~v~~vD~~~~~~~~a~~~~~~-----~~--~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~pgG~l~~  163 (231)
T 1vbf_A           91 IVDKVVSVEINEKMYNYASKLLSY-----YN--NIKLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMIL  163 (231)
T ss_dssp             HSSEEEEEESCHHHHHHHHHHHTT-----CS--SEEEEESCGGGCCGGGCCEEEEEESSBBSSCCHHHHHTEEEEEEEEE
T ss_pred             HcCEEEEEeCCHHHHHHHHHHHhh-----cC--CeEEEECCcccccccCCCccEEEECCcHHHHHHHHHHHcCCCcEEEE
Confidence            7  999999999999999999865     22  89999999887444457899999999999999999999999999999


Q ss_pred             EEcCCCcceEEEEEecCCCceeEEEeeceeEEeccCc
Q psy7830         233 PVGNVWRQNLSVIDKGPDGSISSKILRRVSSDFLCNL  269 (364)
Q Consensus       233 ~~~~~~~~~l~~~~~~~~g~~~~~~l~~~~f~~l~~~  269 (364)
                      .+++.....+..+.+. ++.++...+....|.|+...
T Consensus       164 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  199 (231)
T 1vbf_A          164 PIGVGRVQKLYKVIKK-GNSPSLENLGEVMFGRIGGL  199 (231)
T ss_dssp             EECSSSSEEEEEEECC-TTSCEEEEEEEECCCBCCST
T ss_pred             EEcCCCccEEEEEEEc-CCeeEEEEeccEEEEEcCCc
Confidence            9988766677666664 44567777777777776543

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.88  E-value=4.7e-22  Score=190.20  Aligned_cols=197  Identities=25%  Similarity=0.360  Sum_probs=166.4

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCcc--ccccCCCc-eecCC---CccChHHHHHHHHHHHhccCCCCC
Q psy7830          63 YADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPK--FGFCDIPY-AFANQ---VVMEPPSYIARCLEQLVDHLQNGS  136 (364)
Q Consensus        63 ~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~~~--~~y~d~~l-~ig~g---~~~s~P~~~a~~l~~L~~~l~~g~  136 (364)
                      ++.|++++...| +.+ .+.++|..+||+.|+|....  .+|.+.++ .++.+   +..++|.+...+++.+.  +++++
T Consensus         2 ~~~~~~~l~~~g-i~~-~v~~a~~~vpr~~fl~~~~~y~~~y~~~~~~~l~~~~f~q~~~~~~~~~~l~~~l~--~~~~~   77 (317)
T 1dl5_A            2 REKLFWILKKYG-VSD-HIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGM   77 (317)
T ss_dssp             HHHHHHHHHHTT-CCH-HHHHHHHHSCGGGGCSSCCCHHHHTSSSCEEEEECSSCEEEECCHHHHHHHHHHTT--CCTTC
T ss_pred             hHHHHHHHHHcC-ChH-HHHHHHHhCCHHHhCCchhccccCccCCCcccccCCCcceeccCHHHHHHHHHhcC--CCCcC
Confidence            346888888888 778 99999999999999987654  57888888 89988   88889999999999886  78999


Q ss_pred             EEEEECCCccHHHHHHHcc--e---EEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEcc
Q psy7830         137 RVLDIGSGQGYMATAKEWL--S---SVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGA  211 (364)
Q Consensus       137 ~VLDiGcGsG~~a~~la~~--~---V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~  211 (364)
                      +|||+|||+|.++..+++.  .   |+++|+++.+++.|++++..     .+..++++..+|+.......++||+|+++.
T Consensus        78 ~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~-----~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~  152 (317)
T 1dl5_A           78 RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER-----LGIENVIFVCGDGYYGVPEFSPYDVIFVTV  152 (317)
T ss_dssp             EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH-----TTCCSEEEEESCGGGCCGGGCCEEEEEECS
T ss_pred             EEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH-----cCCCCeEEEECChhhccccCCCeEEEEEcC
Confidence            9999999999999999886  4   99999999999999999987     334679999999987655457899999999


Q ss_pred             ChHHHHHHHHhccCCCcEEEEEEcCCC--cceEEEEEecCCCceeEEEeeceeEEeccCc
Q psy7830         212 GTTEVSKTILSQLKPNGRIVAPVGNVW--RQNLSVIDKGPDGSISSKILRRVSSDFLCNL  269 (364)
Q Consensus       212 ~~~~l~~~l~~~LkpGG~Lvi~~~~~~--~~~l~~~~~~~~g~~~~~~l~~~~f~~l~~~  269 (364)
                      +++++.+.+.+.|||||++++++.+..  .+.+..+.+.. +.+..+.+++..|.|+...
T Consensus       153 ~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~  211 (317)
T 1dl5_A          153 GVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKKD-PYLVGNYKLETRFITAGGN  211 (317)
T ss_dssp             BBSCCCHHHHHHEEEEEEEEEEBCBGGGTBCEEEEEEEET-TEEEEEEEEECCCCBCCGG
T ss_pred             CHHHHHHHHHHhcCCCcEEEEEECCCCcccceEEEEEEeC-CcEEEEEeccEEEEEccCc
Confidence            999988999999999999999987764  45566666654 3577788888888887654

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.66  E-value=7.4e-16  Score=143.39  Aligned_cols=111  Identities=15%  Similarity=0.132  Sum_probs=90.4

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD  193 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D  193 (364)
                      +...+...+..++++|.+|||+|||+|..+..+++.      +|+|+|+|+.|++.|++++....   . ..+++++++|
T Consensus        56 ~~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~---~-~~~v~~~~~D  131 (261)
T 4gek_A           56 IISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK---A-PTPVDVIEGD  131 (261)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSC---C-SSCEEEEESC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhc---c-CceEEEeecc
Confidence            344444555556789999999999999999999865      79999999999999999987721   1 2489999999


Q ss_pred             CCCCCCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEcC
Q psy7830         194 ARWGHAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       194 ~~~~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +.+.+.  ++||+|+++..+++        +++++++.|||||+|+++...
T Consensus       132 ~~~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~  180 (261)
T 4gek_A          132 IRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF  180 (261)
T ss_dssp             TTTCCC--CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             cccccc--cccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEecc
Confidence            987754  56999999887753        578999999999999987543

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.66  E-value=2.6e-15  Score=134.35  Aligned_cols=117  Identities=21%  Similarity=0.247  Sum_probs=98.7

Q ss_pred             ccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCC-CEEEE
Q psy7830         114 VMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSK-TLEFI  190 (364)
Q Consensus       114 ~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~-~v~~~  190 (364)
                      .++.+.+.+.+++.+.  +.++.+|||+|||+|.++..+++.  +|+++|+++.+++.|+++++.     .+.+ +++++
T Consensus        37 ~~~~~~~~~~~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~-----~g~~~~v~~~  109 (204)
T 3njr_A           37 QITKSPMRALTLAALA--PRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDT-----YGLSPRMRAV  109 (204)
T ss_dssp             CCCCHHHHHHHHHHHC--CCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----TTCTTTEEEE
T ss_pred             CCCcHHHHHHHHHhcC--CCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH-----cCCCCCEEEE
Confidence            4566667777888876  788999999999999999999988  999999999999999999988     3345 89999


Q ss_pred             EcCCCCCCCCCCCeeEEEEccChHH-HHHHHHhccCCCcEEEEEEcCC
Q psy7830         191 LKDARWGHAEGGPYDVIFFGAGTTE-VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       191 ~~D~~~~~~~~~~fD~Ii~~~~~~~-l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      .+|+.+.......||+|+++..... +++.+.+.|||||++++.....
T Consensus       110 ~~d~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  157 (204)
T 3njr_A          110 QGTAPAALADLPLPEAVFIGGGGSQALYDRLWEWLAPGTRIVANAVTL  157 (204)
T ss_dssp             ESCTTGGGTTSCCCSEEEECSCCCHHHHHHHHHHSCTTCEEEEEECSH
T ss_pred             eCchhhhcccCCCCCEEEECCcccHHHHHHHHHhcCCCcEEEEEecCc
Confidence            9999875444467999999865433 8899999999999999988664

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.64  E-value=1.2e-15  Score=135.71  Aligned_cols=125  Identities=16%  Similarity=0.142  Sum_probs=100.4

Q ss_pred             ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHh
Q psy7830         100 FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKI  176 (364)
Q Consensus       100 ~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~  176 (364)
                      ..+.|+.+.++.+.+.    ....+++.+...+.++.+|||+|||+|.++..+++.   +|+++|+++.+++.|++++..
T Consensus        30 ~~~~~~~~~f~~~~~~----~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~  105 (205)
T 3grz_A           30 IIRLDPGLAFGTGNHQ----TTQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAAL  105 (205)
T ss_dssp             EEEESCC-----CCHH----HHHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH
T ss_pred             eEEecCCcccCCCCCc----cHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            4567888888888765    667777877766788999999999999999998886   899999999999999999987


Q ss_pred             cCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChHHH---HHHHHhccCCCcEEEEEEc
Q psy7830         177 SRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEV---SKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       177 ~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~l---~~~l~~~LkpGG~Lvi~~~  235 (364)
                      +     +..++++..+|+....  .++||+|+++.+.+++   ++++.++|||||++++...
T Consensus       106 ~-----~~~~v~~~~~d~~~~~--~~~fD~i~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  160 (205)
T 3grz_A          106 N-----GIYDIALQKTSLLADV--DGKFDLIVANILAEILLDLIPQLDSHLNEDGQVIFSGI  160 (205)
T ss_dssp             T-----TCCCCEEEESSTTTTC--CSCEEEEEEESCHHHHHHHGGGSGGGEEEEEEEEEEEE
T ss_pred             c-----CCCceEEEeccccccC--CCCceEEEECCcHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            2     2346999999997654  3689999999988764   5778889999999999743

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.63  E-value=2.1e-15  Score=131.74  Aligned_cols=111  Identities=20%  Similarity=0.186  Sum_probs=87.8

Q ss_pred             HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC
Q psy7830         121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH  198 (364)
Q Consensus       121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~  198 (364)
                      +..+..++...++++.+|||+|||+|.++..+++.  +|+|+|+|+.+++.|++++..+     +.++++++..|.....
T Consensus         9 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~-----~~~~v~~~~~~~~~l~   83 (185)
T 3mti_A            9 IHMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDL-----GIENTELILDGHENLD   83 (185)
T ss_dssp             HHHHHHHHHTTCCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHH-----TCCCEEEEESCGGGGG
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHc-----CCCcEEEEeCcHHHHH
Confidence            34455556656789999999999999999999987  9999999999999999999873     2368999997776532


Q ss_pred             -CCCCCeeEEEEccCh-H--------------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         199 -AEGGPYDVIFFGAGT-T--------------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       199 -~~~~~fD~Ii~~~~~-~--------------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                       ..+++||+|+++... +              .+++++.+.|||||++++.+..
T Consensus        84 ~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  137 (185)
T 3mti_A           84 HYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY  137 (185)
T ss_dssp             GTCCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             hhccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence             124689999988321 1              2458899999999999998754

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.63  E-value=1.1e-15  Score=141.34  Aligned_cols=149  Identities=21%  Similarity=0.201  Sum_probs=111.2

Q ss_pred             CCCHHHHHHHHh------CCCCCccCCCcc------ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEECC
Q psy7830          76 LNHPRVEEAFYA------VRRADFINVKPK------FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGS  143 (364)
Q Consensus        76 ~~~~~~~~a~~~------v~R~~~~p~~~~------~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGc  143 (364)
                      +.+++|.+....      +.+.++.|+|..      ....++++.||+|.+.    ++..+++.+...+.++.+|||+||
T Consensus        54 ~~~~dw~~~~~~~~~p~~~~~~~i~~~w~~~~~~~~~~~l~p~~~fgtg~~~----tt~~~~~~l~~~~~~~~~VLDiGc  129 (254)
T 2nxc_A           54 VGDEDWLEAWRRDLKPALAPPFVVLAPWHTWEGAEIPLVIEPGMAFGTGHHE----TTRLALKALARHLRPGDKVLDLGT  129 (254)
T ss_dssp             CCHHHHHHHHHHHCCCEEETTEEEECTTCCCCSSSEEEECCCC-----CCSH----HHHHHHHHHHHHCCTTCEEEEETC
T ss_pred             cChhHHHHHHHhhCCCEEEecEEEeCCCCCCCCCceEEEECCCccccCCCCH----HHHHHHHHHHHhcCCCCEEEEecC
Confidence            456666555421      112344555432      3456888999999888    778888888776788999999999


Q ss_pred             CccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChHH---HHH
Q psy7830         144 GQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTE---VSK  218 (364)
Q Consensus       144 GsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~---l~~  218 (364)
                      |+|.++..+++.  +|+++|+|+.+++.+++|+..+.     .. +++..+|+.... ..++||+|++|...+.   +++
T Consensus       130 G~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~-----~~-v~~~~~d~~~~~-~~~~fD~Vv~n~~~~~~~~~l~  202 (254)
T 2nxc_A          130 GSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNG-----VR-PRFLEGSLEAAL-PFGPFDLLVANLYAELHAALAP  202 (254)
T ss_dssp             TTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTT-----CC-CEEEESCHHHHG-GGCCEEEEEEECCHHHHHHHHH
T ss_pred             CCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcC-----Cc-EEEEECChhhcC-cCCCCCEEEECCcHHHHHHHHH
Confidence            999999999888  99999999999999999998733     23 889999986532 2468999999987654   678


Q ss_pred             HHHhccCCCcEEEEEEc
Q psy7830         219 TILSQLKPNGRIVAPVG  235 (364)
Q Consensus       219 ~l~~~LkpGG~Lvi~~~  235 (364)
                      .+.+.|||||+++++..
T Consensus       203 ~~~~~LkpgG~lils~~  219 (254)
T 2nxc_A          203 RYREALVPGGRALLTGI  219 (254)
T ss_dssp             HHHHHEEEEEEEEEEEE
T ss_pred             HHHHHcCCCCEEEEEee
Confidence            89999999999999753

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.62  E-value=7.2e-15  Score=130.59  Aligned_cols=114  Identities=22%  Similarity=0.206  Sum_probs=96.8

Q ss_pred             ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830         116 EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL  191 (364)
Q Consensus       116 s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~  191 (364)
                      +...+.+.+++.+.  +.++.+|||+|||+|.++..+++.    +|+++|+++.+++.+++++..+     +.++++++.
T Consensus        24 ~~~~i~~~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~v~~~~   96 (204)
T 3e05_A           24 TKQEVRAVTLSKLR--LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKF-----VARNVTLVE   96 (204)
T ss_dssp             CCHHHHHHHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHH-----TCTTEEEEE
T ss_pred             ChHHHHHHHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh-----CCCcEEEEe
Confidence            45556677788776  788999999999999999999876    8999999999999999999873     246899999


Q ss_pred             cCCCCCCCCCCCeeEEEEccC---hHHHHHHHHhccCCCcEEEEEEcC
Q psy7830         192 KDARWGHAEGGPYDVIFFGAG---TTEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       192 ~D~~~~~~~~~~fD~Ii~~~~---~~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +|+.+.....++||+|+++..   ...+++++.+.|||||++++....
T Consensus        97 ~d~~~~~~~~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  144 (204)
T 3e05_A           97 AFAPEGLDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVT  144 (204)
T ss_dssp             CCTTTTCTTSCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred             CChhhhhhcCCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEecc
Confidence            999766544468999999887   457889999999999999998755

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.62  E-value=5.1e-15  Score=136.40  Aligned_cols=108  Identities=18%  Similarity=0.200  Sum_probs=92.3

Q ss_pred             HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC
Q psy7830         121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH  198 (364)
Q Consensus       121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~  198 (364)
                      ...+++.+.  ..++.+|||+|||+|.++..+++.  +|+++|+|+.+++.+++++..     .+.+++.++.+|+...+
T Consensus        26 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~~v~~~~~d~~~l~   98 (260)
T 1vl5_A           26 LAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEG-----NGHQQVEYVQGDAEQMP   98 (260)
T ss_dssp             HHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHH-----TTCCSEEEEECCC-CCC
T ss_pred             HHHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHh-----cCCCceEEEEecHHhCC
Confidence            466777776  578999999999999999999988  999999999999999999877     23458999999998877


Q ss_pred             CCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEc
Q psy7830         199 AEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       199 ~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      ..+++||+|+++..+++      ++.++.++|||||++++...
T Consensus        99 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~  141 (260)
T 1vl5_A           99 FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDN  141 (260)
T ss_dssp             SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence            66689999999988754      67899999999999998653

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.61  E-value=4.5e-16  Score=148.68  Aligned_cols=175  Identities=14%  Similarity=0.026  Sum_probs=123.1

Q ss_pred             eeeccCCCccchhhhcccHHHHHHHHHHHHHcCCCCCH-HHHHHHHhCCCCCccCC---Ccc--ccccCCCceecCCCcc
Q psy7830          42 LRSEMYDEDNENEENFFYTRSYADFLEGLKERKLLNHP-RVEEAFYAVRRADFINV---KPK--FGFCDIPYAFANQVVM  115 (364)
Q Consensus        42 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~a~~~v~R~~~~p~---~~~--~~y~d~~l~ig~g~~~  115 (364)
                      ++.++...++...|+|+.+.+++++.+.|.+.|....+ .|      .+....++.   ...  ..|.++.+.+++..++
T Consensus        35 ~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~  108 (315)
T 1ixk_A           35 IAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPW------AKEGFCLTREPFSITSTPEFLTGLIYIQEASSM  108 (315)
T ss_dssp             HHHHTTSCCCCEEEECTTTSCHHHHHHHHHHTTCEEEEETT------EEEEEEEEECSSCGGGSHHHHTTSEEECCHHHH
T ss_pred             HHHHcCCCCCeEEEEeCCCCCHHHHHHHHHhCCCeeeECCC------CCceEEEeCCCCCcccChhHhcceEEEeCHHHH
Confidence            44555666666779999999999999888777632111 11      010101100   000  3455555555543322


Q ss_pred             ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEE
Q psy7830         116 EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFI  190 (364)
Q Consensus       116 s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~  190 (364)
                             .+...+.  ++++.+|||+|||+|..+..++..     +|+++|+++.+++.+++|+++     .+..+++++
T Consensus       109 -------l~~~~l~--~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~-----~g~~~v~~~  174 (315)
T 1ixk_A          109 -------YPPVALD--PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSR-----LGVLNVILF  174 (315)
T ss_dssp             -------HHHHHHC--CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH-----HTCCSEEEE
T ss_pred             -------HHHHHhC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHH-----hCCCeEEEE
Confidence                   2233443  688999999999999999999864     899999999999999999988     334689999


Q ss_pred             EcCCCCCCCCCCCeeEEEEccCh----------------------------HHHHHHHHhccCCCcEEEEEEcC
Q psy7830         191 LKDARWGHAEGGPYDVIFFGAGT----------------------------TEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       191 ~~D~~~~~~~~~~fD~Ii~~~~~----------------------------~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      .+|+.......++||+|+++.++                            ..++..+.++|||||+|++++.+
T Consensus       175 ~~D~~~~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs  248 (315)
T 1ixk_A          175 HSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS  248 (315)
T ss_dssp             SSCGGGGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             ECChhhcccccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            99998765434689999998664                            24678899999999999998754

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.61  E-value=4.1e-15  Score=136.34  Aligned_cols=114  Identities=21%  Similarity=0.154  Sum_probs=95.3

Q ss_pred             cChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830         115 MEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL  191 (364)
Q Consensus       115 ~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~  191 (364)
                      +..+..+..+++.+.  +.++.+|||+|||+|.++..+++.   +|+++|+++.+++.+++++....   + .+++++..
T Consensus        19 ~~~~~~~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~---~-~~~v~~~~   92 (256)
T 1nkv_A           19 PFTEEKYATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELG---V-SERVHFIH   92 (256)
T ss_dssp             SCCHHHHHHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTT---C-TTTEEEEE
T ss_pred             CCCHHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC---C-CcceEEEE
Confidence            344556777777775  688999999999999999999875   99999999999999999987721   1 14899999


Q ss_pred             cCCCCCCCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEc
Q psy7830         192 KDARWGHAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       192 ~D~~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      +|+.+.+. +++||+|++...+++      +++++.++|||||++++...
T Consensus        93 ~d~~~~~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  141 (256)
T 1nkv_A           93 NDAAGYVA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEP  141 (256)
T ss_dssp             SCCTTCCC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             CChHhCCc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecC
Confidence            99988766 678999999777654      58899999999999999764

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.61  E-value=6.2e-15  Score=134.46  Aligned_cols=114  Identities=17%  Similarity=0.136  Sum_probs=96.3

Q ss_pred             ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830         116 EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD  193 (364)
Q Consensus       116 s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D  193 (364)
                      +++.....+++.+.  +.++.+|||+|||+|.++..++..  +|+++|+++.+++.+++++...     +.+++++..+|
T Consensus         5 ~~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~v~~~~~d   77 (239)
T 1xxl_A            5 HHHHSLGLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEK-----GVENVRFQQGT   77 (239)
T ss_dssp             -CHHHHHHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHH-----TCCSEEEEECB
T ss_pred             ccCCCcchHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHc-----CCCCeEEEecc
Confidence            34445577788887  789999999999999999999987  9999999999999999998772     23589999999


Q ss_pred             CCCCCCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830         194 ARWGHAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       194 ~~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +...+..+++||+|+++..+++      ++.++.++|||||++++....
T Consensus        78 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  126 (239)
T 1xxl_A           78 AESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHY  126 (239)
T ss_dssp             TTBCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cccCCCCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence            9887666678999999877754      678999999999999987644

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.60  E-value=8.1e-15  Score=126.65  Aligned_cols=115  Identities=24%  Similarity=0.249  Sum_probs=94.1

Q ss_pred             cChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCC-CEEE
Q psy7830         115 MEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSK-TLEF  189 (364)
Q Consensus       115 ~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~-~v~~  189 (364)
                      ++...+...+++.+.  +.++.+|||+|||+|.++..+++.    +|+++|+++.+++.+++++..     .+.+ ++ +
T Consensus         8 ~t~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~-----~~~~~~~-~   79 (178)
T 3hm2_A            8 LTKQHVRALAISALA--PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAIN-----LGVSDRI-A   79 (178)
T ss_dssp             SHHHHHHHHHHHHHC--CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHT-----TTCTTSE-E
T ss_pred             ccHHHHHHHHHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHH-----hCCCCCE-E
Confidence            345556677777776  678999999999999999998876    899999999999999999887     2234 78 8


Q ss_pred             EEcCCCCCCCCC-CCeeEEEEccChHH--HHHHHHhccCCCcEEEEEEcCC
Q psy7830         190 ILKDARWGHAEG-GPYDVIFFGAGTTE--VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       190 ~~~D~~~~~~~~-~~fD~Ii~~~~~~~--l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +.+|........ ++||+|+++..+++  +++.+.+.|||||++++.....
T Consensus        80 ~~~d~~~~~~~~~~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  130 (178)
T 3hm2_A           80 VQQGAPRAFDDVPDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLVANAVTV  130 (178)
T ss_dssp             EECCTTGGGGGCCSCCSEEEECC-TTCTTHHHHHHHTCCTTCEEEEEECSH
T ss_pred             EecchHhhhhccCCCCCEEEECCcccHHHHHHHHHHhcCCCCEEEEEeecc
Confidence            888886543322 78999999988876  8899999999999999988654

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.60  E-value=2.7e-15  Score=133.97  Aligned_cols=111  Identities=13%  Similarity=0.009  Sum_probs=84.7

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcC-----CC--CCCCCCEEEEEc
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISR-----PD--LLQSKTLEFILK  192 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~-----~~--~l~~~~v~~~~~  192 (364)
                      ...++.+.  +.++.+|||+|||+|..+..+++.  +|+|+|+|+.|++.|+++.....     ++  .....+++++++
T Consensus        12 ~~~~~~l~--~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   89 (203)
T 1pjz_A           12 QQYWSSLN--VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG   89 (203)
T ss_dssp             HHHHHHHC--CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred             HHHHHhcc--cCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC
Confidence            33445554  568899999999999999999987  99999999999999998764200     00  001258999999


Q ss_pred             CCCCCCCCC-CCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEE
Q psy7830         193 DARWGHAEG-GPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       193 D~~~~~~~~-~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~  234 (364)
                      |+.+.+..+ ++||+|++...+++        +++++.++|||||++++.+
T Consensus        90 d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~  140 (203)
T 1pjz_A           90 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT  140 (203)
T ss_dssp             CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             ccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            998876543 68999998766643        5678999999999855544

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.59  E-value=5.7e-16  Score=144.93  Aligned_cols=174  Identities=15%  Similarity=0.044  Sum_probs=120.0

Q ss_pred             CCccchhhhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHhC-CCCCccCCCccccccCCCceecCCCccChHHHHHHHHH
Q psy7830          48 DEDNENEENFFYTRSYADFLEGLKERKLLNHPRVEEAFYAV-RRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCLE  126 (364)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~a~~~v-~R~~~~p~~~~~~y~d~~l~ig~g~~~s~P~~~a~~l~  126 (364)
                      ...+...|+|+.+.+++++.+.|.+.|....+.|......+ ++..-+  .....|..+.+.+++..++    +...   
T Consensus         7 ~~~~~~~rvn~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~G~~~~qd~~s~----l~~~---   77 (274)
T 3ajd_A            7 GEKMQFIRVNTLKINPEVLKKRLENKGVVLEKTFLDYAFEVKKSPFSI--GSTPEYLFGYYMPQSISSM----IPPI---   77 (274)
T ss_dssp             --CCEEEEECTTTCCHHHHHHHHHTTTCEEEECSSTTEEEEEECSSCT--TSSHHHHTTSEEECCSGGG----HHHH---
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHHCCCeecCCCCCceEEEecCCCCc--ccChhhhCCeEEEeCHHHH----HHHH---
Confidence            34455678898888999998888777632221111100000 010000  0013566666666665544    3333   


Q ss_pred             HHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC--
Q psy7830         127 QLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA--  199 (364)
Q Consensus       127 ~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~--  199 (364)
                      .+.  +++|.+|||+|||+|..+..++..     +|+++|+++.+++.+++|+++     .+..+++++.+|+.....  
T Consensus        78 ~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~-----~g~~~v~~~~~D~~~~~~~~  150 (274)
T 3ajd_A           78 VLN--PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINR-----MGVLNTIIINADMRKYKDYL  150 (274)
T ss_dssp             HHC--CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHH-----TTCCSEEEEESCHHHHHHHH
T ss_pred             HhC--CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHH-----hCCCcEEEEeCChHhcchhh
Confidence            333  678999999999999999998863     899999999999999999988     344689999999876543  


Q ss_pred             --CCCCeeEEEEccCh------------------------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         200 --EGGPYDVIFFGAGT------------------------TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       200 --~~~~fD~Ii~~~~~------------------------~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                        ..++||+|+++.++                        ..+++.+.+.|||||+|++++.+.
T Consensus       151 ~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          151 LKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             HHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             hhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence              24689999998554                        346788899999999999987653

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.59  E-value=1.8e-15  Score=140.44  Aligned_cols=102  Identities=12%  Similarity=0.047  Sum_probs=86.0

Q ss_pred             HHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCC
Q psy7830         124 CLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEG  201 (364)
Q Consensus       124 ~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~  201 (364)
                      ++++|..+...+.+|||||||+|.++..+++.  +|+|+|+|+.|++.|++           .++++++++|+.+.+.++
T Consensus        29 l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~-----------~~~v~~~~~~~e~~~~~~   97 (257)
T 4hg2_A           29 LFRWLGEVAPARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALR-----------HPRVTYAVAPAEDTGLPP   97 (257)
T ss_dssp             HHHHHHHHSSCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCC-----------CTTEEEEECCTTCCCCCS
T ss_pred             HHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhh-----------cCCceeehhhhhhhcccC
Confidence            34555544566789999999999999999988  99999999999987653           258999999999888778


Q ss_pred             CCeeEEEEccChHH-----HHHHHHhccCCCcEEEEEEcC
Q psy7830         202 GPYDVIFFGAGTTE-----VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~-----l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ++||+|++...+++     .+.++.++|||||+|++....
T Consensus        98 ~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~~~~  137 (257)
T 4hg2_A           98 ASVDVAIAAQAMHWFDLDRFWAELRRVARPGAVFAAVTYG  137 (257)
T ss_dssp             SCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CcccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEEEEECC
Confidence            89999999888764     678999999999999886643

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.58  E-value=8e-15  Score=128.87  Aligned_cols=120  Identities=11%  Similarity=-0.012  Sum_probs=93.2

Q ss_pred             CccChHHHHHHHHHHHhccC-CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEE
Q psy7830         113 VVMEPPSYIARCLEQLVDHL-QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLE  188 (364)
Q Consensus       113 ~~~s~P~~~a~~l~~L~~~l-~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~  188 (364)
                      ..++...+...+++.+.... .++.+|||+|||+|.++..++..   +|+++|+|+.+++.|++|+..+.     .++++
T Consensus        22 ~rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~v~   96 (189)
T 3p9n_A           22 TRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALG-----LSGAT   96 (189)
T ss_dssp             C---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHT-----CSCEE
T ss_pred             CccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC-----CCceE
Confidence            34444556677777776321 57889999999999999977766   89999999999999999998833     36899


Q ss_pred             EEEcCCCCCCC--CCCCeeEEEEccChHH-------HHHHHHh--ccCCCcEEEEEEcCC
Q psy7830         189 FILKDARWGHA--EGGPYDVIFFGAGTTE-------VSKTILS--QLKPNGRIVAPVGNV  237 (364)
Q Consensus       189 ~~~~D~~~~~~--~~~~fD~Ii~~~~~~~-------l~~~l~~--~LkpGG~Lvi~~~~~  237 (364)
                      ++++|+.+...  ..++||+|+++.++++       ++..+.+  +|+|||++++.....
T Consensus        97 ~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~  156 (189)
T 3p9n_A           97 LRRGAVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATT  156 (189)
T ss_dssp             EEESCHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred             EEEccHHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence            99999876532  2468999999877643       5677877  999999999987654

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.58  E-value=1.9e-14  Score=133.13  Aligned_cols=114  Identities=17%  Similarity=0.108  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC
Q psy7830         118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA  194 (364)
Q Consensus       118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~  194 (364)
                      +..+..+++.+. .+.++.+|||+|||+|.++..+++.   +|+|+|+++.+++.+++++....   + .++++++.+|+
T Consensus        31 ~~~~~~~l~~l~-~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~-~~~v~~~~~d~  105 (267)
T 3kkz_A           31 PEVTLKALSFID-NLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSG---L-QNRVTGIVGSM  105 (267)
T ss_dssp             HHHHHHHHTTCC-CCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTT---C-TTTEEEEECCT
T ss_pred             HHHHHHHHHhcc-cCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcC---C-CcCcEEEEcCh
Confidence            335566666655 3678999999999999999999987   99999999999999999988722   1 24699999999


Q ss_pred             CCCCCCCCCeeEEEEccChHH-----HHHHHHhccCCCcEEEEEEcC
Q psy7830         195 RWGHAEGGPYDVIFFGAGTTE-----VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       195 ~~~~~~~~~fD~Ii~~~~~~~-----l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      .+.+...++||+|+++.++++     +++++.+.|||||++++....
T Consensus       106 ~~~~~~~~~fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  152 (267)
T 3kkz_A          106 DDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSECS  152 (267)
T ss_dssp             TSCCCCTTCEEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred             hhCCCCCCCEEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEee
Confidence            887655678999999888764     678999999999999998743

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.58  E-value=1.1e-14  Score=133.41  Aligned_cols=113  Identities=15%  Similarity=0.113  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC
Q psy7830         118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA  194 (364)
Q Consensus       118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~  194 (364)
                      +..+..+++.+. .+.++.+|||+|||+|.++..+++.   +|+++|+++.+++.+++++....   + .++++++++|+
T Consensus        31 ~~~~~~~l~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~-~~~~~~~~~d~  105 (257)
T 3f4k_A           31 PEATRKAVSFIN-ELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKAN---C-ADRVKGITGSM  105 (257)
T ss_dssp             HHHHHHHHTTSC-CCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTT---C-TTTEEEEECCT
T ss_pred             HHHHHHHHHHHh-cCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcC---C-CCceEEEECCh
Confidence            446667777664 2678899999999999999999887   99999999999999999988722   1 13599999999


Q ss_pred             CCCCCCCCCeeEEEEccChH-----HHHHHHHhccCCCcEEEEEEc
Q psy7830         195 RWGHAEGGPYDVIFFGAGTT-----EVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       195 ~~~~~~~~~fD~Ii~~~~~~-----~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      ...+..+++||+|+++..++     .+++++.++|||||++++...
T Consensus       106 ~~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~  151 (257)
T 3f4k_A          106 DNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEA  151 (257)
T ss_dssp             TSCSSCTTCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hhCCCCCCCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            87766668999999987765     478899999999999999874

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.57  E-value=3.8e-14  Score=126.98  Aligned_cols=112  Identities=17%  Similarity=0.155  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCC---CCCEEEEE
Q psy7830         119 SYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQ---SKTLEFIL  191 (364)
Q Consensus       119 ~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~---~~~v~~~~  191 (364)
                      .....+++.+.  ..++.+|||+|||+|.++..+++.    +|+++|+++.+++.+++++..+.   +.   ..+++++.
T Consensus        16 ~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~~~~~v~~~~   90 (217)
T 3jwh_A           16 QRMNGVVAALK--QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLR---LPRNQWERLQLIQ   90 (217)
T ss_dssp             HHHHHHHHHHH--HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCC---CCHHHHTTEEEEE
T ss_pred             HHHHHHHHHHH--hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhc---CCcccCcceEEEe
Confidence            45566666665  467889999999999999999875    89999999999999999987521   11   02799999


Q ss_pred             cCCCCCCCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEc
Q psy7830         192 KDARWGHAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       192 ~D~~~~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      +|+.......++||+|+++..+++        +++++.+.|||||++++...
T Consensus        91 ~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  142 (217)
T 3jwh_A           91 GALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPN  142 (217)
T ss_dssp             CCTTSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred             CCcccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence            998765544578999999887753        56789999999997776554

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.56  E-value=2.3e-14  Score=135.12  Aligned_cols=98  Identities=20%  Similarity=0.191  Sum_probs=83.4

Q ss_pred             CCCCCEEEEECCCccHHH-HHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         132 LQNGSRVLDIGSGQGYMA-TAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a-~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      ++++++|||||||+|.++ ..+++.   +|+++|+|+++++.|++++++     .+..+++++++|+.+.+  +++||+|
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~-----~gl~~v~~v~gDa~~l~--d~~FDvV  192 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEG-----LGVDGVNVITGDETVID--GLEFDVL  192 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHH-----HTCCSEEEEESCGGGGG--GCCCSEE
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHh-----cCCCCeEEEECchhhCC--CCCcCEE
Confidence            789999999999999766 455554   999999999999999999987     22368999999998764  5789999


Q ss_pred             EEccChH---HHHHHHHhccCCCcEEEEEEcC
Q psy7830         208 FFGAGTT---EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       208 i~~~~~~---~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ++.....   .+++++.++|||||+|++....
T Consensus       193 ~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~~  224 (298)
T 3fpf_A          193 MVAALAEPKRRVFRNIHRYVDTETRIIYRTYT  224 (298)
T ss_dssp             EECTTCSCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             EECCCccCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence            9876653   6889999999999999987754

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.56  E-value=3.3e-14  Score=126.45  Aligned_cols=112  Identities=21%  Similarity=0.203  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC
Q psy7830         118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA  194 (364)
Q Consensus       118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~  194 (364)
                      +.+...+++.+.  .+++ +|||+|||+|.++..+++.   +|+++|+++.+++.+++++....   + .++++++++|+
T Consensus        30 ~~~~~~~~~~~~--~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~---~-~~~~~~~~~d~  102 (219)
T 3dlc_A           30 PIIAENIINRFG--ITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADAN---L-NDRIQIVQGDV  102 (219)
T ss_dssp             HHHHHHHHHHHC--CCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTT---C-TTTEEEEECBT
T ss_pred             HHHHHHHHHhcC--CCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhcc---c-cCceEEEEcCH
Confidence            335566666665  4555 9999999999999999885   99999999999999999988722   1 24899999999


Q ss_pred             CCCCCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830         195 RWGHAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       195 ~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ...+..+++||+|+++..+++      +++++.+.|||||++++....
T Consensus       103 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  150 (219)
T 3dlc_A          103 HNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGF  150 (219)
T ss_dssp             TBCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             HHCCCCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEecc
Confidence            887666678999999987754      678999999999999997644

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.56  E-value=1.1e-14  Score=129.81  Aligned_cols=116  Identities=19%  Similarity=0.118  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC
Q psy7830         119 SYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR  195 (364)
Q Consensus       119 ~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~  195 (364)
                      .+...+++++.. ..++.+|||+|||+|.++..++..   +|+++|+|+.+++.|++|+..+.   +..++++++.+|+.
T Consensus        39 ~~~~~l~~~l~~-~~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~v~~~~~d~~  114 (201)
T 2ift_A           39 RVKETLFNWLMP-YIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLK---CSSEQAEVINQSSL  114 (201)
T ss_dssp             HHHHHHHHHHHH-HHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTT---CCTTTEEEECSCHH
T ss_pred             HHHHHHHHHHHH-hcCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhC---CCccceEEEECCHH
Confidence            355566666652 136889999999999999986655   89999999999999999998732   11158999999987


Q ss_pred             CCCCC--CCC-eeEEEEccCh-----HHHHHHH--HhccCCCcEEEEEEcCCC
Q psy7830         196 WGHAE--GGP-YDVIFFGAGT-----TEVSKTI--LSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       196 ~~~~~--~~~-fD~Ii~~~~~-----~~l~~~l--~~~LkpGG~Lvi~~~~~~  238 (364)
                      +....  .++ ||+|+++.++     ..++..+  .++|||||++++......
T Consensus       115 ~~~~~~~~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          115 DFLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             HHTTSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             HHHHhhccCCCCCEEEECCCCCCccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            65432  467 9999999873     3456666  567999999999887654

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.55  E-value=3.3e-14  Score=125.33  Aligned_cols=101  Identities=16%  Similarity=0.177  Sum_probs=84.9

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC-CCCCCee
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH-AEGGPYD  205 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~-~~~~~fD  205 (364)
                      ++++.+|||+|||+|.++..+++.     +|+++|+++.+++.|++++..+.   + .++++++++|+.... ...++||
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~-~~~v~~~~~d~~~~~~~~~~~fD   95 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN---L-IDRVTLIKDGHQNMDKYIDCPVK   95 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTT---C-GGGEEEECSCGGGGGGTCCSCEE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---C-CCCeEEEECCHHHHhhhccCCce
Confidence            688999999999999999988875     89999999999999999998722   1 158999999987664 2347899


Q ss_pred             EEEEccCh---------------HHHHHHHHhccCCCcEEEEEEcC
Q psy7830         206 VIFFGAGT---------------TEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       206 ~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +|+++.++               ..++.++.+.|||||++++....
T Consensus        96 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~  141 (197)
T 3eey_A           96 AVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY  141 (197)
T ss_dssp             EEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence            99998755               35788999999999999988743

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.55  E-value=5.5e-14  Score=126.93  Aligned_cols=101  Identities=21%  Similarity=0.336  Sum_probs=84.4

Q ss_pred             cCCCCCEEEEECCC-ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC-CCCCCee
Q psy7830         131 HLQNGSRVLDIGSG-QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH-AEGGPYD  205 (364)
Q Consensus       131 ~l~~g~~VLDiGcG-sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~-~~~~~fD  205 (364)
                      .++++.+|||+||| +|.++..+++.   +|+++|+++.+++.|++|+..+.     . +++++.+|+.... ..+++||
T Consensus        52 ~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~-~v~~~~~d~~~~~~~~~~~fD  125 (230)
T 3evz_A           52 FLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNN-----S-NVRLVKSNGGIIKGVVEGTFD  125 (230)
T ss_dssp             TCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTT-----C-CCEEEECSSCSSTTTCCSCEE
T ss_pred             hcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhC-----C-CcEEEeCCchhhhhcccCcee
Confidence            36789999999999 99999998876   99999999999999999998833     3 8999999974332 2247899


Q ss_pred             EEEEccCh-------------------------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         206 VIFFGAGT-------------------------TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       206 ~Ii~~~~~-------------------------~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +|++|.++                         ..+++.+.+.|||||++++.+...
T Consensus       126 ~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  182 (230)
T 3evz_A          126 VIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK  182 (230)
T ss_dssp             EEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC
T ss_pred             EEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence            99999664                         457889999999999999977543

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.55  E-value=7.1e-14  Score=125.29  Aligned_cols=114  Identities=17%  Similarity=0.194  Sum_probs=89.3

Q ss_pred             hHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCC---CCCEEE
Q psy7830         117 PPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQ---SKTLEF  189 (364)
Q Consensus       117 ~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~---~~~v~~  189 (364)
                      .+.....+++.+.  ..++.+|||+|||+|.++..+++.    +|+++|+|+.+++.+++++..+.   +.   ..++++
T Consensus        14 ~~~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~~~~~v~~   88 (219)
T 3jwg_A           14 NQQRLGTVVAVLK--SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDR---LPEMQRKRISL   88 (219)
T ss_dssp             HHHHHHHHHHHHH--HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGG---SCHHHHTTEEE
T ss_pred             hHHHHHHHHHHHh--hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhc---cccccCcceEE
Confidence            3445566666665  367889999999999999999876    89999999999999999986521   11   127999


Q ss_pred             EEcCCCCCCCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEc
Q psy7830         190 ILKDARWGHAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       190 ~~~D~~~~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      +.+|+.......++||+|+++..+++        +++++.+.|||||.++....
T Consensus        89 ~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  142 (219)
T 3jwg_A           89 FQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPN  142 (219)
T ss_dssp             EECCSSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred             EeCcccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccc
Confidence            99999766555578999999877654        56789999999996665443

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.55  E-value=3e-14  Score=127.52  Aligned_cols=108  Identities=18%  Similarity=0.207  Sum_probs=91.8

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      ..+++.+.  +.++.+|||+|||+|.++..+++.     +|+++|+++.+++.+++++...     +.+++++..+|+..
T Consensus        27 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~~d~~~   99 (219)
T 3dh0_A           27 EKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKL-----GLKNVEVLKSEENK   99 (219)
T ss_dssp             HHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHH-----TCTTEEEEECBTTB
T ss_pred             HHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc-----CCCcEEEEeccccc
Confidence            56666665  678999999999999999888765     8999999999999999998872     23589999999988


Q ss_pred             CCCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830         197 GHAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       197 ~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ....+++||+|+++..+++      +++++.+.|||||++++....
T Consensus       100 ~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  145 (219)
T 3dh0_A          100 IPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWK  145 (219)
T ss_dssp             CSSCSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCCCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEec
Confidence            7666678999999888754      678999999999999997643

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.55  E-value=2.8e-14  Score=132.07  Aligned_cols=103  Identities=15%  Similarity=0.053  Sum_probs=80.9

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHh----------cCCCC--CCCCCEEEEEcCCCCC
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKI----------SRPDL--LQSKTLEFILKDARWG  197 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~----------~~~~~--l~~~~v~~~~~D~~~~  197 (364)
                      ..++.+|||+|||+|..+..|++.  +|+|+|+|+.|++.|+++...          +....  -...+++++++|+.+.
T Consensus        66 ~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l  145 (252)
T 2gb4_A           66 GQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL  145 (252)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred             CCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence            357899999999999999999988  999999999999999876531          00000  0125899999999887


Q ss_pred             CCCC-CCeeEEEEccChH--------HHHHHHHhccCCCcEEEEEE
Q psy7830         198 HAEG-GPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       198 ~~~~-~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ...+ ++||+|++...+.        .+++++.++|||||++++..
T Consensus       146 ~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~  191 (252)
T 2gb4_A          146 PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAV  191 (252)
T ss_dssp             GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            6643 7899999876653        35788999999999997543

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.55  E-value=1.4e-14  Score=133.16  Aligned_cols=109  Identities=18%  Similarity=0.182  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC
Q psy7830         119 SYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR  195 (364)
Q Consensus       119 ~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~  195 (364)
                      ..+..+++.+.  +.++.+|||+|||+|.++..+++.   +|+++|+++.+++.+++++..       .++++++.+|+.
T Consensus        42 ~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~  112 (266)
T 3ujc_A           42 EATKKILSDIE--LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSG-------NNKIIFEANDIL  112 (266)
T ss_dssp             HHHHHHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCS-------CTTEEEEECCTT
T ss_pred             HHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhc-------CCCeEEEECccc
Confidence            35566666554  578899999999999999999885   999999999999999988654       158999999998


Q ss_pred             CCCCCCCCeeEEEEccChHHH--------HHHHHhccCCCcEEEEEEcC
Q psy7830         196 WGHAEGGPYDVIFFGAGTTEV--------SKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       196 ~~~~~~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ..+..+++||+|+++..++++        ++++.++|||||++++....
T Consensus       113 ~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  161 (266)
T 3ujc_A          113 TKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYC  161 (266)
T ss_dssp             TCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            876666899999999877654        68999999999999987643

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.54  E-value=4.3e-14  Score=130.84  Aligned_cols=111  Identities=18%  Similarity=0.208  Sum_probs=90.7

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      +...+++.+.  +.++.+|||+|||+|.++..+++.   +|+++|+|+.+++.+++++....   + .+++++..+|+..
T Consensus        49 ~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~-~~~~~~~~~d~~~  122 (273)
T 3bus_A           49 LTDEMIALLD--VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAG---L-ANRVTFSYADAMD  122 (273)
T ss_dssp             HHHHHHHHSC--CCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTT---C-TTTEEEEECCTTS
T ss_pred             HHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcC---C-CcceEEEECcccc
Confidence            3344455443  568899999999999999999874   99999999999999999987721   1 2479999999988


Q ss_pred             CCCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830         197 GHAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       197 ~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      .+..+++||+|+++..+++      +++++.++|||||++++....
T Consensus       123 ~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  168 (273)
T 3bus_A          123 LPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFV  168 (273)
T ss_dssp             CCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             CCCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEee
Confidence            7666678999999877754      678999999999999987643

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.54  E-value=4.2e-14  Score=133.41  Aligned_cols=107  Identities=17%  Similarity=0.113  Sum_probs=88.1

Q ss_pred             HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830         121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG  197 (364)
Q Consensus       121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~  197 (364)
                      +..+++.+.  ++++.+|||+|||+|.++..+++.   +|+++|+|+.+++.|++++....   + ..++++..+|+.+.
T Consensus        61 ~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~-~~~v~~~~~d~~~~  134 (302)
T 3hem_A           61 RKLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVD---S-PRRKEVRIQGWEEF  134 (302)
T ss_dssp             HHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSC---C-SSCEEEEECCGGGC
T ss_pred             HHHHHHHcC--CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC---C-CCceEEEECCHHHc
Confidence            344455443  578999999999999999999886   99999999999999999988722   1 13799999999766


Q ss_pred             CCCCCCeeEEEEccChHHH---------------HHHHHhccCCCcEEEEEEcC
Q psy7830         198 HAEGGPYDVIFFGAGTTEV---------------SKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       198 ~~~~~~fD~Ii~~~~~~~l---------------~~~l~~~LkpGG~Lvi~~~~  236 (364)
                         +++||+|+++..++++               ++++.++|||||++++....
T Consensus       135 ---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  185 (302)
T 3hem_A          135 ---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT  185 (302)
T ss_dssp             ---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEE
T ss_pred             ---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence               5789999998776544               68999999999999987654

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.54  E-value=5.8e-14  Score=131.80  Aligned_cols=114  Identities=18%  Similarity=0.096  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHh--ccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830         119 SYIARCLEQLV--DHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD  193 (364)
Q Consensus       119 ~~~a~~l~~L~--~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D  193 (364)
                      ..+..+++.+.  ..+.++.+|||+|||+|.++..+++.   +|+++|+++.+++.+++++....   + .++++++.+|
T Consensus        65 ~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~-~~~~~~~~~d  140 (297)
T 2o57_A           65 RTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAG---L-ADNITVKYGS  140 (297)
T ss_dssp             HHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHT---C-TTTEEEEECC
T ss_pred             HHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcC---C-CcceEEEEcC
Confidence            35566677661  12678999999999999999999876   99999999999999999987622   1 2479999999


Q ss_pred             CCCCCCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830         194 ARWGHAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       194 ~~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +...+..+++||+|++...+++      ++.++.++|||||++++....
T Consensus       141 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  189 (297)
T 2o57_A          141 FLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPM  189 (297)
T ss_dssp             TTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cccCCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence            9887766678999999887754      678999999999999987643

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.54  E-value=5.7e-14  Score=126.07  Aligned_cols=111  Identities=23%  Similarity=0.285  Sum_probs=92.2

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG  197 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~  197 (364)
                      ....+.+.+.+++.++.+|||+|||+|.++..+++.  +|+++|+++.+++.+++++..+     + .+++++.+|+...
T Consensus        24 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~-~~~~~~~~d~~~~   97 (227)
T 1ve3_A           24 RIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSR-----E-SNVEFIVGDARKL   97 (227)
T ss_dssp             HHHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-----T-CCCEEEECCTTSC
T ss_pred             HHHHHHHHHHHhcCCCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc-----C-CCceEEECchhcC
Confidence            345556666666677899999999999999999888  9999999999999999998762     2 5899999999876


Q ss_pred             CCCCCCeeEEEEccC--hH------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         198 HAEGGPYDVIFFGAG--TT------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       198 ~~~~~~fD~Ii~~~~--~~------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ....++||+|+++.+  ..      .+++++.+.|||||++++....
T Consensus        98 ~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A           98 SFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             CSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            555578999999877  32      3678999999999999998765

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.54  E-value=2.4e-14  Score=129.93  Aligned_cols=105  Identities=17%  Similarity=0.164  Sum_probs=89.1

Q ss_pred             HHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCC
Q psy7830         125 LEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGG  202 (364)
Q Consensus       125 l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~  202 (364)
                      ++.+..++.++.+|||+|||+|.++..+++.  +|+++|+++.+++.++++...        .+++++.+|+...+..++
T Consensus        44 ~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~d~~~~~~~~~  115 (242)
T 3l8d_A           44 IPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEG--------PDLSFIKGDLSSLPFENE  115 (242)
T ss_dssp             HHHHHHHSCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTCB--------TTEEEEECBTTBCSSCTT
T ss_pred             HHHHHHHcCCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhccc--------CCceEEEcchhcCCCCCC
Confidence            4444445678999999999999999999988  999999999999999887522        589999999988776668


Q ss_pred             CeeEEEEccChH------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         203 PYDVIFFGAGTT------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       203 ~fD~Ii~~~~~~------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +||+|+++..++      .++.++.+.|+|||++++.....
T Consensus       116 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  156 (242)
T 3l8d_A          116 QFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGP  156 (242)
T ss_dssp             CEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             CccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCC
Confidence            999999988776      46789999999999999987543

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.54  E-value=5.2e-14  Score=129.17  Aligned_cols=109  Identities=15%  Similarity=0.068  Sum_probs=91.0

Q ss_pred             HHHHHHHHH---hccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC
Q psy7830         120 YIARCLEQL---VDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA  194 (364)
Q Consensus       120 ~~a~~l~~L---~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~  194 (364)
                      ....+++.+   ...+.++.+|||+|||+|.++..+++.  +|+++|+|+.+++.+++++..      ..+++++..+|+
T Consensus        22 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~------~~~~~~~~~~d~   95 (263)
T 2yqz_A           22 VAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAG------VDRKVQVVQADA   95 (263)
T ss_dssp             HHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTTT------SCTTEEEEESCT
T ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhc------cCCceEEEEccc
Confidence            456666666   224678899999999999999999987  999999999999999998722      135899999999


Q ss_pred             CCCCCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEE
Q psy7830         195 RWGHAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       195 ~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ...+..+++||+|+++..+++      ++.++.+.|||||++++..
T Consensus        96 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (263)
T 2yqz_A           96 RAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEGW  141 (263)
T ss_dssp             TSCCSCTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCCCCCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEEe
Confidence            877655678999999887654      6789999999999999874

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.54  E-value=4.5e-14  Score=126.18  Aligned_cols=97  Identities=14%  Similarity=0.133  Sum_probs=84.0

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF  209 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~  209 (364)
                      ..++.+|||+|||+|.++..+++.  +|+++|+++.+++.+++++..       .++++++++|+.... ..++||+|++
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~~~~-~~~~fD~v~~  120 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKR-------WSHISWAATDILQFS-TAELFDLIVV  120 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTT-------CSSEEEEECCTTTCC-CSCCEEEEEE
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhccc-------CCCeEEEEcchhhCC-CCCCccEEEE
Confidence            457789999999999999999988  999999999999999998865       248999999998876 3578999999


Q ss_pred             ccChHH---------HHHHHHhccCCCcEEEEEEcC
Q psy7830         210 GAGTTE---------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       210 ~~~~~~---------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +..+++         ++.++.++|||||++++....
T Consensus       121 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  156 (216)
T 3ofk_A          121 AEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR  156 (216)
T ss_dssp             ESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             ccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence            877643         467899999999999997744

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.54  E-value=1.7e-14  Score=138.51  Aligned_cols=151  Identities=17%  Similarity=0.142  Sum_probs=111.9

Q ss_pred             HHHhCCCCCccCCCcc------ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--
Q psy7830          84 AFYAVRRADFINVKPK------FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--  155 (364)
Q Consensus        84 a~~~v~R~~~~p~~~~------~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--  155 (364)
                      .+...++..|.+..-.      ..|.+-...+..+..+..|..++.+++.+.  +.++.+|||+|||+|+++..+++.  
T Consensus        51 ~ig~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g  128 (336)
T 2b25_A           51 IVGKFPGQILRSSFGKQYMLRRPALEDYVVLMKRGTAITFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVG  128 (336)
T ss_dssp             HTTCCTTEEEECTTSCEEEEECCCHHHHHHHSCCSSCCCCHHHHHHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHC
T ss_pred             HcCCCCCceEEeCCCcEEEecCCCHHHHhhhhcCCCcccCHHHHHHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhC
Confidence            3444566666544311      223333445667777888998899999886  789999999999999999998874  


Q ss_pred             ---eEEEEeCCHHHHHHHHHHHHh-c----CCCCCC--CCCEEEEEcCCCCCC--CCCCCeeEEEEccChHH-HHHHHHh
Q psy7830         156 ---SSVRQLLLPETLNNSLKNIKI-S----RPDLLQ--SKTLEFILKDARWGH--AEGGPYDVIFFGAGTTE-VSKTILS  222 (364)
Q Consensus       156 ---~V~~vDis~~~l~~a~~~~~~-~----~~~~l~--~~~v~~~~~D~~~~~--~~~~~fD~Ii~~~~~~~-l~~~l~~  222 (364)
                         +|+++|+++.+++.|++|+.. +    ..+ +.  ..++++..+|+.+..  ...++||+|+++....+ +++.+.+
T Consensus       129 ~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~-~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~~~~~~l~~~~~  207 (336)
T 2b25_A          129 SQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSH-VEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYP  207 (336)
T ss_dssp             TTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTC-SSCCCCCEEEEESCTTCCC-------EEEEEECSSSTTTTHHHHGG
T ss_pred             CCceEEEEeCCHHHHHHHHHHHHHhhccccccc-ccccCCceEEEECChHHcccccCCCCeeEEEECCCCHHHHHHHHHH
Confidence               899999999999999999875 1    000 10  258999999998753  23457999999877654 5889999


Q ss_pred             ccCCCcEEEEEEcCC
Q psy7830         223 QLKPNGRIVAPVGNV  237 (364)
Q Consensus       223 ~LkpGG~Lvi~~~~~  237 (364)
                      +|||||+|++.....
T Consensus       208 ~LkpgG~lv~~~~~~  222 (336)
T 2b25_A          208 HLKHGGVCAVYVVNI  222 (336)
T ss_dssp             GEEEEEEEEEEESSH
T ss_pred             hcCCCcEEEEEeCCH
Confidence            999999999988764

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.54  E-value=5.5e-14  Score=124.81  Aligned_cols=107  Identities=15%  Similarity=0.125  Sum_probs=89.7

Q ss_pred             HHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC
Q psy7830         124 CLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE  200 (364)
Q Consensus       124 ~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~  200 (364)
                      +.+.+..++.++.+|||+|||+|.++..+++.   +|+++|+++.+++.++++...       .+++++..+|+......
T Consensus        32 ~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~-------~~~i~~~~~d~~~~~~~  104 (215)
T 2pxx_A           32 FRALLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH-------VPQLRWETMDVRKLDFP  104 (215)
T ss_dssp             HHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT-------CTTCEEEECCTTSCCSC
T ss_pred             HHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc-------CCCcEEEEcchhcCCCC
Confidence            45555556788999999999999999999887   799999999999999998754       24899999999877655


Q ss_pred             CCCeeEEEEccChH---------------------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         201 GGPYDVIFFGAGTT---------------------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~---------------------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +++||+|+++.+++                     .++.++.++|||||++++.....
T Consensus       105 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          105 SASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             SSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             CCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence            67899999876652                     35678899999999999988765

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.54  E-value=4.1e-14  Score=128.27  Aligned_cols=107  Identities=15%  Similarity=0.116  Sum_probs=90.1

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG  197 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~  197 (364)
                      ....+++.+.+ ..++.+|||+|||+|.++..+++.  +|+|+|+++.+++.|+++...         +++++.+|+.+.
T Consensus        29 ~~~~~~~~l~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~---------~v~~~~~d~~~~   98 (250)
T 2p7i_A           29 MHPFMVRAFTP-FFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD---------GITYIHSRFEDA   98 (250)
T ss_dssp             HHHHHHHHHGG-GCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS---------CEEEEESCGGGC
T ss_pred             HHHHHHHHHHh-hcCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC---------CeEEEEccHHHc
Confidence            44666777764 357789999999999999999988  999999999999999987521         799999999877


Q ss_pred             CCCCCCeeEEEEccChHH------HHHHHH-hccCCCcEEEEEEcCC
Q psy7830         198 HAEGGPYDVIFFGAGTTE------VSKTIL-SQLKPNGRIVAPVGNV  237 (364)
Q Consensus       198 ~~~~~~fD~Ii~~~~~~~------l~~~l~-~~LkpGG~Lvi~~~~~  237 (364)
                      . .+++||+|++...+++      +++++. ++|||||++++.+.+.
T Consensus        99 ~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~  144 (250)
T 2p7i_A           99 Q-LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNA  144 (250)
T ss_dssp             C-CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred             C-cCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCCh
Confidence            3 4578999999888764      678999 9999999999988664

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.54  E-value=1.8e-15  Score=152.24  Aligned_cols=182  Identities=15%  Similarity=0.109  Sum_probs=122.2

Q ss_pred             eeeccCCCccchhhhcccHHHHHHHHHHHHHcCCCCCH-HHHHHHHhCCCCCc--cCCCccccccCCCceecCCCccChH
Q psy7830          42 LRSEMYDEDNENEENFFYTRSYADFLEGLKERKLLNHP-RVEEAFYAVRRADF--INVKPKFGFCDIPYAFANQVVMEPP  118 (364)
Q Consensus        42 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~a~~~v~R~~~--~p~~~~~~y~d~~l~ig~g~~~s~P  118 (364)
                      .+.++...++...|+|+.+.+++++.+.|.+.|....+ .|...-..+++...  .+......|.++.+.+++.+++   
T Consensus        29 ~~~a~~~~~p~~lRvN~lk~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~---  105 (479)
T 2frx_A           29 FLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSM---  105 (479)
T ss_dssp             HHHHHTSCCCCCEEECTTTCCHHHHHHHHGGGCCCCCEETTEEEEEC---------CGGGSHHHHTTSEEECCHHHH---
T ss_pred             HHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHcCCceeecCCCCceEEEecCcccccCcccChHHhCcEEEEECHHHH---
Confidence            44555556666679999999999998888777632211 11000000000000  0000013455555555553322   


Q ss_pred             HHHHHHHHHHhccCC--CCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830         119 SYIARCLEQLVDHLQ--NGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL  191 (364)
Q Consensus       119 ~~~a~~l~~L~~~l~--~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~  191 (364)
                       +.   ...|.  +.  +|.+|||+|||+|..+..++..     +|+++|+++.+++.+++|+++     .+..++.++.
T Consensus       106 -l~---~~~L~--~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r-----~g~~nv~~~~  174 (479)
T 2frx_A          106 -LP---VAALF--ADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISR-----CGISNVALTH  174 (479)
T ss_dssp             -HH---HHHHT--TTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHH-----HTCCSEEEEC
T ss_pred             -HH---HHHhC--cccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-----cCCCcEEEEe
Confidence             22   23344  45  8999999999999999999874     899999999999999999988     3346899999


Q ss_pred             cCCCCCCC-CCCCeeEEEEccChH----------------------------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         192 KDARWGHA-EGGPYDVIFFGAGTT----------------------------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       192 ~D~~~~~~-~~~~fD~Ii~~~~~~----------------------------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +|+..... ..+.||+|+++.+|.                            .++..+.++|||||+|++++.+.
T Consensus       175 ~D~~~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~  249 (479)
T 2frx_A          175 FDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL  249 (479)
T ss_dssp             CCSTTHHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             CCHHHhhhhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence            99876543 346899999976651                            35678889999999999987653

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.53  E-value=4.4e-15  Score=148.49  Aligned_cols=176  Identities=15%  Similarity=0.063  Sum_probs=120.7

Q ss_pred             eeccC-CCccchhhhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCC--c--cccccCCCceecCCCccCh
Q psy7830          43 RSEMY-DEDNENEENFFYTRSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVK--P--KFGFCDIPYAFANQVVMEP  117 (364)
Q Consensus        43 ~~~l~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~--~--~~~y~d~~l~ig~g~~~s~  117 (364)
                      +.+++ ..++...|+|+.+.+++++.+.|.+.|+...+.     ...+-...++..  .  ...|.++.+.+++..+   
T Consensus       177 ~~a~~~~~~~~~~Rvn~~k~~~~~~~~~L~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s---  248 (450)
T 2yxl_A          177 FRSVNKRHEWISIRVNTLKANVEEVIGELEEDGVEVVRS-----ERVPTILKIKGPYNFDTSSAFNEGKIIVQEEAS---  248 (450)
T ss_dssp             HHHHHCCCCEEEEEECTTTCCHHHHHHHHHHTTCCEEEC-----SSCTTEEEEESCCCTTSCHHHHTTSEEECCHHH---
T ss_pred             HHhcCCCCCCEEEEEcCCCCCHHHHHHHHHhCCccceec-----CccCceEEeCCCCCcccCchhhCceEEecCchh---
Confidence            34445 455566688888888888888887776321110     001111111000  0  0345555555554322   


Q ss_pred             HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830         118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK  192 (364)
Q Consensus       118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~  192 (364)
                          ..+...+.  +++|.+|||+|||+|..+..++..     +|+++|+++.+++.+++|+.+     .+..+++++.+
T Consensus       249 ----~l~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~-----~g~~~v~~~~~  317 (450)
T 2yxl_A          249 ----AVASIVLD--PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKR-----MGIKIVKPLVK  317 (450)
T ss_dssp             ----HHHHHHHC--CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH-----TTCCSEEEECS
T ss_pred             ----HHHHHhcC--CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH-----cCCCcEEEEEc
Confidence                22233343  688999999999999999999874     799999999999999999988     44568999999


Q ss_pred             CCCCCCC--CCCCeeEEEEccCh----------------------------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         193 DARWGHA--EGGPYDVIFFGAGT----------------------------TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       193 D~~~~~~--~~~~fD~Ii~~~~~----------------------------~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      |+.....  ..++||+|+++.+|                            ..++..+.++|||||+|++++.+.
T Consensus       318 D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~  392 (450)
T 2yxl_A          318 DARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI  392 (450)
T ss_dssp             CTTCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             ChhhcchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            9987642  23679999987655                            246788999999999999887653

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.53  E-value=8.8e-14  Score=124.66  Aligned_cols=99  Identities=16%  Similarity=0.205  Sum_probs=85.1

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--CCCCCeeE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH--AEGGPYDV  206 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~--~~~~~fD~  206 (364)
                      .++.+|||+|||+|.++..+++.    +|+|+|+++.+++.|++++..+     +.++++++.+|+....  ...++||+
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~D~  114 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEV-----GVPNIKLLWVDGSDLTDYFEDGEIDR  114 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH-----CCSSEEEEECCSSCGGGTSCTTCCSE
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHc-----CCCCEEEEeCCHHHHHhhcCCCCCCE
Confidence            56889999999999999998876    8999999999999999999873     2368999999998754  34568999


Q ss_pred             EEEccCh--------------HHHHHHHHhccCCCcEEEEEEcC
Q psy7830         207 IFFGAGT--------------TEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       207 Ii~~~~~--------------~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      |+++.+.              ..++..+.+.|||||++++....
T Consensus       115 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  158 (214)
T 1yzh_A          115 LYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN  158 (214)
T ss_dssp             EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred             EEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC
Confidence            9998775              35889999999999999998755

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.52  E-value=4.3e-14  Score=126.04  Aligned_cols=118  Identities=12%  Similarity=0.036  Sum_probs=89.6

Q ss_pred             cChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830         115 MEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL  191 (364)
Q Consensus       115 ~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~  191 (364)
                      ++...+...+++++... .++.+|||+|||+|.++..++..   +|+++|+|+.+++.|++|+..+     +.+++++++
T Consensus        36 p~~~~~~~~l~~~l~~~-~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~-----~~~~v~~~~  109 (202)
T 2fpo_A           36 PTTDRVRETLFNWLAPV-IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATL-----KAGNARVVN  109 (202)
T ss_dssp             --CHHHHHHHHHHHHHH-HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHT-----TCCSEEEEC
T ss_pred             CCHHHHHHHHHHHHHhh-cCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHc-----CCCcEEEEE
Confidence            33344556666666521 26889999999999999986655   8999999999999999999883     236899999


Q ss_pred             cCCCCC-CCCCCCeeEEEEccChH-----HHHHHHHh--ccCCCcEEEEEEcCCC
Q psy7830         192 KDARWG-HAEGGPYDVIFFGAGTT-----EVSKTILS--QLKPNGRIVAPVGNVW  238 (364)
Q Consensus       192 ~D~~~~-~~~~~~fD~Ii~~~~~~-----~l~~~l~~--~LkpGG~Lvi~~~~~~  238 (364)
                      +|+... ....++||+|+++.+++     .+++.+.+  +|+|||++++......
T Consensus       110 ~D~~~~~~~~~~~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~  164 (202)
T 2fpo_A          110 SNAMSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEVEN  164 (202)
T ss_dssp             SCHHHHHSSCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEGGG
T ss_pred             CCHHHHHhhcCCCCCEEEECCCCCCCcHHHHHHHHHhcCccCCCcEEEEEECCCc
Confidence            998763 22346899999998732     45666655  5999999999887643

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.52  E-value=4.3e-14  Score=121.10  Aligned_cols=119  Identities=14%  Similarity=0.089  Sum_probs=94.1

Q ss_pred             ccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830         114 VMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL  191 (364)
Q Consensus       114 ~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~  191 (364)
                      .++...+...+++.+...+.++.+|||+|||+|.++..+++.  .|+++|+++.+++.+++++..+.     . +++++.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~-----~-~~~~~~   94 (171)
T 1ws6_A           21 RPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTG-----L-GARVVA   94 (171)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHT-----C-CCEEEC
T ss_pred             CCCHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcC-----C-ceEEEe
Confidence            334445667777777643447899999999999999999987  89999999999999999998732     3 799999


Q ss_pred             cCCCCCCC----CCCCeeEEEEccCh----HHHHHHHH--hccCCCcEEEEEEcCCC
Q psy7830         192 KDARWGHA----EGGPYDVIFFGAGT----TEVSKTIL--SQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       192 ~D~~~~~~----~~~~fD~Ii~~~~~----~~l~~~l~--~~LkpGG~Lvi~~~~~~  238 (364)
                      +|+.+...    ..++||+|+++.++    ..+.+.+.  ++|||||++++......
T Consensus        95 ~d~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~  151 (171)
T 1ws6_A           95 LPVEVFLPEAKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKDL  151 (171)
T ss_dssp             SCHHHHHHHHHHTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred             ccHHHHHHhhhccCCceEEEEECCCCchhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence            99875321    12479999999654    45667777  99999999999887754

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.52  E-value=8.6e-14  Score=122.18  Aligned_cols=104  Identities=16%  Similarity=0.075  Sum_probs=86.6

Q ss_pred             HHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC
Q psy7830         123 RCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE  200 (364)
Q Consensus       123 ~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~  200 (364)
                      .+++.+.  ..++.+|||+|||+|.++..+++.  +|+++|+++.+++.+++++....     .+++++..+|+..... 
T Consensus        23 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~~~~-   94 (199)
T 2xvm_A           23 EVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIEN-----LDNLHTRVVDLNNLTF-   94 (199)
T ss_dssp             HHHHHTT--TSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT-----CTTEEEEECCGGGCCC-
T ss_pred             HHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCC-----CCCcEEEEcchhhCCC-
Confidence            3455554  457789999999999999999987  99999999999999999987722     3579999999987765 


Q ss_pred             CCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEE
Q psy7830         201 GGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~  234 (364)
                      .++||+|+++..+++        ++.++.+.|||||++++..
T Consensus        95 ~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A           95 DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            678999999876643        5788999999999987754

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.52  E-value=1.4e-13  Score=119.84  Aligned_cols=111  Identities=18%  Similarity=0.192  Sum_probs=92.9

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC--EEEEEcCCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKT--LEFILKDAR  195 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~--v~~~~~D~~  195 (364)
                      ....+++.+.  ..++.+|||+|||+|.++..+++.  +|+++|+++.+++.+++++...     +..+  +++..+|+.
T Consensus        40 ~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~d~~  112 (194)
T 1dus_A           40 GTKILVENVV--VDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLN-----NLDNYDIRVVHSDLY  112 (194)
T ss_dssp             HHHHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHT-----TCTTSCEEEEECSTT
T ss_pred             HHHHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHc-----CCCccceEEEECchh
Confidence            5577777775  568899999999999999999887  9999999999999999998872     2345  999999987


Q ss_pred             CCCCCCCCeeEEEEccChH-------HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         196 WGHAEGGPYDVIFFGAGTT-------EVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       196 ~~~~~~~~fD~Ii~~~~~~-------~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      .... .++||+|+++.+++       .+++.+.+.|+|||++++......
T Consensus       113 ~~~~-~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  161 (194)
T 1dus_A          113 ENVK-DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQ  161 (194)
T ss_dssp             TTCT-TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTH
T ss_pred             cccc-cCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence            7543 56899999988753       467889999999999999887753

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.52  E-value=1.2e-13  Score=120.19  Aligned_cols=116  Identities=16%  Similarity=0.149  Sum_probs=95.5

Q ss_pred             cChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCC-CCEEEEE
Q psy7830         115 MEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQS-KTLEFIL  191 (364)
Q Consensus       115 ~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~-~~v~~~~  191 (364)
                      .+...+...+++.+.  +.++.+|||+|||+|.++..+++.  +|+++|+++.+++.+++++..+     +. +++.+..
T Consensus        16 ~~~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~-----~~~~~~~~~~   88 (192)
T 1l3i_A           16 PTAMEVRCLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRH-----GLGDNVTLME   88 (192)
T ss_dssp             CCCHHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHT-----TCCTTEEEEE
T ss_pred             CChHHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHc-----CCCcceEEEe
Confidence            455667777777775  688999999999999999999987  9999999999999999998872     23 5899999


Q ss_pred             cCCCCCCCCCCCeeEEEEccCh---HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         192 KDARWGHAEGGPYDVIFFGAGT---TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       192 ~D~~~~~~~~~~fD~Ii~~~~~---~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +|+.......++||+|+++...   ..++..+.+.|+|||++++.....
T Consensus        89 ~d~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~~~  137 (192)
T 1l3i_A           89 GDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILL  137 (192)
T ss_dssp             SCHHHHHTTSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECBH
T ss_pred             cCHHHhcccCCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEecCc
Confidence            9986632222589999998774   457889999999999999987653

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.52  E-value=6.2e-14  Score=125.50  Aligned_cols=103  Identities=17%  Similarity=0.065  Sum_probs=88.4

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA  199 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~  199 (364)
                      ..+++.+.  ..++.+|||+|||+|.++..+++.  +|+++|+++.+++.+++++.         .+++++.+|+...+.
T Consensus        35 ~~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~d~~~~~~  103 (220)
T 3hnr_A           35 EDILEDVV--NKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP---------KEFSITEGDFLSFEV  103 (220)
T ss_dssp             HHHHHHHH--HTCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC---------TTCCEESCCSSSCCC
T ss_pred             HHHHHHhh--ccCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC---------CceEEEeCChhhcCC
Confidence            45666665  468899999999999999999987  99999999999999998863         378899999988766


Q ss_pred             CCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEcC
Q psy7830         200 EGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       200 ~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      . ++||+|+++..+++        ++.++.+.|||||++++....
T Consensus       104 ~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  147 (220)
T 3hnr_A          104 P-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTI  147 (220)
T ss_dssp             C-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred             C-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence            5 78999999988754        678999999999999998644

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.52  E-value=7.2e-14  Score=132.61  Aligned_cols=101  Identities=14%  Similarity=0.089  Sum_probs=86.3

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      +.++.+|||+|||+|.++..+++.   +|+|+|+++.+++.|++++..+.   + .++++++.+|+...+..+++||+|+
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~-~~~v~~~~~d~~~~~~~~~~fD~V~  190 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELR---I-DDHVRSRVCNMLDTPFDKGAVTASW  190 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT---C-TTTEEEEECCTTSCCCCTTCEEEEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC---C-CCceEEEECChhcCCCCCCCEeEEE
Confidence            467899999999999999999876   99999999999999999988722   1 1379999999988766568999999


Q ss_pred             EccChH-----HHHHHHHhccCCCcEEEEEEcC
Q psy7830         209 FGAGTT-----EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       209 ~~~~~~-----~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ++..++     .+++++.++|||||++++....
T Consensus       191 ~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~~  223 (312)
T 3vc1_A          191 NNESTMYVDLHDLFSEHSRFLKVGGRYVTITGC  223 (312)
T ss_dssp             EESCGGGSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ECCchhhCCHHHHHHHHHHHcCCCcEEEEEEcc
Confidence            987764     4788999999999999987643

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.52  E-value=9.8e-14  Score=129.59  Aligned_cols=100  Identities=24%  Similarity=0.238  Sum_probs=86.2

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCC-CCEEEEEcCCCCCC-CCCCCeeEEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQS-KTLEFILKDARWGH-AEGGPYDVIF  208 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~-~~v~~~~~D~~~~~-~~~~~fD~Ii  208 (364)
                      .++.+|||+|||+|.++..+++.  +|+++|+++.+++.|++++...     +. ++++++.+|+...+ ..+++||+|+
T Consensus        67 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~~~~~fD~v~  141 (285)
T 4htf_A           67 PQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAK-----GVSDNMQFIHCAAQDVASHLETPVDLIL  141 (285)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC------CCGGGEEEEESCGGGTGGGCSSCEEEEE
T ss_pred             CCCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-----CCCcceEEEEcCHHHhhhhcCCCceEEE
Confidence            45789999999999999999988  9999999999999999998772     22 58999999998776 3457899999


Q ss_pred             EccChHH------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         209 FGAGTTE------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       209 ~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ++..+++      +++++.++|||||++++.....
T Consensus       142 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  176 (285)
T 4htf_A          142 FHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNA  176 (285)
T ss_dssp             EESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBH
T ss_pred             ECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCC
Confidence            9988764      6789999999999999987653

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.52  E-value=7.6e-14  Score=127.01  Aligned_cols=111  Identities=15%  Similarity=0.195  Sum_probs=89.7

Q ss_pred             ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830         116 EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL  191 (364)
Q Consensus       116 s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~  191 (364)
                      .+|.+...+...+.  ..++.+|||+|||+|+.+..+++.    +|+++|+++.+++.|++++....   + .++++++.
T Consensus        55 ~~~~~~~~l~~~~~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~-~~~v~~~~  128 (232)
T 3ntv_A           55 VDRLTLDLIKQLIR--MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYH---F-ENQVRIIE  128 (232)
T ss_dssp             CCHHHHHHHHHHHH--HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTT---C-TTTEEEEE
T ss_pred             cCHHHHHHHHHHHh--hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---C-CCcEEEEE
Confidence            34556555555554  567899999999999999999984    99999999999999999998722   1 14899999


Q ss_pred             cCCCCCCC--CCCCeeEEEEccChH---HHHHHHHhccCCCcEEEE
Q psy7830         192 KDARWGHA--EGGPYDVIFFGAGTT---EVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       192 ~D~~~~~~--~~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi  232 (364)
                      +|+.+..+  ..++||+|+++....   .+++.+.++|||||+|++
T Consensus       129 ~d~~~~~~~~~~~~fD~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~  174 (232)
T 3ntv_A          129 GNALEQFENVNDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVIT  174 (232)
T ss_dssp             SCGGGCHHHHTTSCEEEEEEETTSSSHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCHHHHHHhhccCCccEEEEcCcHHHHHHHHHHHHHhcCCCeEEEE
Confidence            99977543  147899999987653   467899999999999987

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.52  E-value=1.2e-15  Score=152.63  Aligned_cols=173  Identities=13%  Similarity=0.052  Sum_probs=121.3

Q ss_pred             eeeccCCC-ccchhhhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCC----CccccccCCCceecCCCccC
Q psy7830          42 LRSEMYDE-DNENEENFFYTRSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINV----KPKFGFCDIPYAFANQVVME  116 (364)
Q Consensus        42 ~~~~l~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~----~~~~~y~d~~l~ig~g~~~s  116 (364)
                      ++.+++.. +....|+|+.+.+++++.+.+   +....+     ....+-..+++.    .....|.++.+.+++.+++ 
T Consensus        21 ~l~a~~~~~~~~~lRvN~lk~~~~~~~~~l---~~~~~~-----~~~~~~g~~l~~~~~~~~~~~~~~G~~~vQd~ss~-   91 (464)
T 3m6w_A           21 FLKALTEGKRTYGLRVNTLKLPPEAFQRIS---PWPLRP-----IPWCQEGFYYPEEARPGPHPFFYAGLYYIQEPSAQ-   91 (464)
T ss_dssp             HHHHHHTSCCCCEEEECTTTCCHHHHHHHC---SSCCEE-----ETTEEEEEECCTTCCCSSSHHHHTTSEEECCTTTH-
T ss_pred             HHHHcCCCCCCeEEEEcCCCCCHHHHHHHc---CCCcee-----cCCCCceEEECCCCCcccChHHhCCeEEEECHHHH-
Confidence            34455555 666779999988888887655   211110     000011111111    0014567777778776654 


Q ss_pred             hHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830         117 PPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL  191 (364)
Q Consensus       117 ~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~  191 (364)
                         +++.   .+.  +++|.+|||+|||+|..+..++..     +|+++|+++.+++.+++|+++     .+.. +.++.
T Consensus        92 ---l~a~---~L~--~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r-----~G~~-v~~~~  157 (464)
T 3m6w_A           92 ---AVGV---LLD--PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVER-----WGAP-LAVTQ  157 (464)
T ss_dssp             ---HHHH---HHC--CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH-----HCCC-CEEEC
T ss_pred             ---HHHH---hcC--cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-----cCCe-EEEEE
Confidence               4433   333  678999999999999999999865     899999999999999999998     3345 89999


Q ss_pred             cCCCCCCC-CCCCeeEEEEccCh----------------------------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         192 KDARWGHA-EGGPYDVIFFGAGT----------------------------TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       192 ~D~~~~~~-~~~~fD~Ii~~~~~----------------------------~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +|+..... ..++||+|+++.+|                            ..++..+.++|||||+|++++.+.
T Consensus       158 ~Da~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~  232 (464)
T 3m6w_A          158 APPRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF  232 (464)
T ss_dssp             SCHHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             CCHHHhhhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence            99876542 24689999998776                            336788899999999999987654

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.51  E-value=6.7e-14  Score=137.01  Aligned_cols=111  Identities=18%  Similarity=0.209  Sum_probs=92.1

Q ss_pred             HHHHHHHHhccC----CCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC
Q psy7830         121 IARCLEQLVDHL----QNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA  194 (364)
Q Consensus       121 ~a~~l~~L~~~l----~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~  194 (364)
                      ...+++.+...+    .++.+|||+|||+|.++..+++.  +|+++|+|+.+++.+++|+..+.      .+++++.+|+
T Consensus       216 t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~------~~v~~~~~D~  289 (381)
T 3dmg_A          216 SLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANA------LKAQALHSDV  289 (381)
T ss_dssp             HHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTT------CCCEEEECST
T ss_pred             HHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcC------CCeEEEEcch
Confidence            455666665333    37889999999999999999988  99999999999999999998733      2489999999


Q ss_pred             CCCCCCCCCeeEEEEccChH-----------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         195 RWGHAEGGPYDVIFFGAGTT-----------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       195 ~~~~~~~~~fD~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      .......++||+|++|.+++           .++..+.+.|||||++++.....
T Consensus       290 ~~~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~  343 (381)
T 3dmg_A          290 DEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPF  343 (381)
T ss_dssp             TTTSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred             hhccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence            88766557899999987664           36788999999999999988654

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.51  E-value=5.2e-14  Score=128.05  Aligned_cols=97  Identities=15%  Similarity=0.069  Sum_probs=80.2

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC--CCCCCCeeE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG--HAEGGPYDV  206 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~--~~~~~~fD~  206 (364)
                      ..++.+|||+|||+|.++..+++.   +|+++|+|+.|++.|+++....     + .+++++.+|+.+.  +..+++||+
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~-----~-~~v~~~~~d~~~~~~~~~~~~fD~  131 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQ-----T-HKVIPLKGLWEDVAPTLPDGHFDG  131 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGC-----S-SEEEEEESCHHHHGGGSCTTCEEE
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhc-----C-CCeEEEecCHHHhhcccCCCceEE
Confidence            468899999999999999999886   8999999999999999988762     2 4799999998876  455678999


Q ss_pred             EEE-ccC----h-H-----HHHHHHHhccCCCcEEEEEE
Q psy7830         207 IFF-GAG----T-T-----EVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       207 Ii~-~~~----~-~-----~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      |++ ...    . +     .++.++.++|||||+|++..
T Consensus       132 V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  170 (236)
T 1zx0_A          132 ILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             EEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             EEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence            999 222    1 1     34788999999999998754

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.51  E-value=6.3e-14  Score=121.97  Aligned_cols=120  Identities=17%  Similarity=0.114  Sum_probs=93.4

Q ss_pred             ccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEE
Q psy7830         114 VMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFI  190 (364)
Q Consensus       114 ~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~  190 (364)
                      .++...+...+++.+.. ..++.+|||+|||+|.++..+++.   +|+++|+++.+++.|++++..+.   + .++++++
T Consensus        25 rp~~~~~~~~~~~~l~~-~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~-~~~~~~~   99 (187)
T 2fhp_A           25 RPTTDKVKESIFNMIGP-YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITK---E-PEKFEVR   99 (187)
T ss_dssp             CCCCHHHHHHHHHHHCS-CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHT---C-GGGEEEE
T ss_pred             CcCHHHHHHHHHHHHHh-hcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhC---C-CcceEEE
Confidence            44455666777777742 357889999999999999987766   89999999999999999998732   1 1479999


Q ss_pred             EcCCCCCCC----CCCCeeEEEEccChH-----HHHHHH--HhccCCCcEEEEEEcCCC
Q psy7830         191 LKDARWGHA----EGGPYDVIFFGAGTT-----EVSKTI--LSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       191 ~~D~~~~~~----~~~~fD~Ii~~~~~~-----~l~~~l--~~~LkpGG~Lvi~~~~~~  238 (364)
                      .+|+.+...    ..++||+|+++.++.     ..+..+  .++|+|||++++......
T Consensus       100 ~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  158 (187)
T 2fhp_A          100 KMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKTV  158 (187)
T ss_dssp             ESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             ECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence            999876332    146899999997743     355566  788999999999887754

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.51  E-value=8.2e-14  Score=128.50  Aligned_cols=104  Identities=13%  Similarity=0.082  Sum_probs=87.4

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG  197 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~  197 (364)
                      ....+++.+..++.++.+|||+|||+|.++..+++.  +|+++|+|+.+++.|++++          .+++++.+|+...
T Consensus        36 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~----------~~~~~~~~d~~~~  105 (263)
T 3pfg_A           36 EAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRN----------PDAVLHHGDMRDF  105 (263)
T ss_dssp             HHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHC----------TTSEEEECCTTTC
T ss_pred             HHHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhC----------CCCEEEECChHHC
Confidence            345566666655677899999999999999999988  9999999999999999875          3789999999887


Q ss_pred             CCCCCCeeEEEEcc-ChHH---------HHHHHHhccCCCcEEEEEE
Q psy7830         198 HAEGGPYDVIFFGA-GTTE---------VSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       198 ~~~~~~fD~Ii~~~-~~~~---------l~~~l~~~LkpGG~Lvi~~  234 (364)
                      .. .++||+|+++. .+++         +++++.+.|||||++++..
T Consensus       106 ~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~  151 (263)
T 3pfg_A          106 SL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEP  151 (263)
T ss_dssp             CC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             Cc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            65 57899999986 5543         4688999999999999964

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.51  E-value=5.7e-14  Score=128.69  Aligned_cols=97  Identities=19%  Similarity=0.202  Sum_probs=84.8

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF  209 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~  209 (364)
                      .++.+|||+|||+|.++..+++.   +|+++|+++.+++.+++++..        .+++++.+|+...+..+++||+|++
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~d~~~~~~~~~~fD~v~~  114 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTS--------PVVCYEQKAIEDIAIEPDAYNVVLS  114 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCC--------TTEEEEECCGGGCCCCTTCEEEEEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhcc--------CCeEEEEcchhhCCCCCCCeEEEEE
Confidence            37899999999999999999887   899999999999999988642        5899999999887665689999999


Q ss_pred             ccChHH------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         210 GAGTTE------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       210 ~~~~~~------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +..+++      +++++.++|||||++++.+...
T Consensus       115 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  148 (253)
T 3g5l_A          115 SLALHYIASFDDICKKVYINLKSSGSFIFSVEHP  148 (253)
T ss_dssp             ESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             chhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCCC
Confidence            887754      6789999999999999987553

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.50  E-value=4e-13  Score=115.97  Aligned_cols=117  Identities=17%  Similarity=0.126  Sum_probs=95.1

Q ss_pred             CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEE
Q psy7830         112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEF  189 (364)
Q Consensus       112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~  189 (364)
                      +..+..+.+...+++.+.  ..++.+|||+|||+|.++..+++.  +|+++|+++.+++.+++++..+     +.+++++
T Consensus        15 ~~~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~-----~~~~~~~   87 (183)
T 2yxd_A           15 GVPITKEEIRAVSIGKLN--LNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKF-----NIKNCQI   87 (183)
T ss_dssp             TBCCCCHHHHHHHHHHHC--CCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHT-----TCCSEEE
T ss_pred             CCCcCHHHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHc-----CCCcEEE
Confidence            345666777788888875  678899999999999999999877  9999999999999999999873     3468999


Q ss_pred             EEcCCCCCCCCCCCeeEEEEccC--hHHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         190 ILKDARWGHAEGGPYDVIFFGAG--TTEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       190 ~~~D~~~~~~~~~~fD~Ii~~~~--~~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      +.+|+.+. ...++||+|+++.+  ...++..+.+.  |||.+++......
T Consensus        88 ~~~d~~~~-~~~~~~D~i~~~~~~~~~~~l~~~~~~--~gG~l~~~~~~~~  135 (183)
T 2yxd_A           88 IKGRAEDV-LDKLEFNKAFIGGTKNIEKIIEILDKK--KINHIVANTIVLE  135 (183)
T ss_dssp             EESCHHHH-GGGCCCSEEEECSCSCHHHHHHHHHHT--TCCEEEEEESCHH
T ss_pred             EECCcccc-ccCCCCcEEEECCcccHHHHHHHHhhC--CCCEEEEEecccc
Confidence            99998763 33468999999876  33566777777  9999999885543

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.50  E-value=6.3e-14  Score=121.44  Aligned_cols=114  Identities=16%  Similarity=0.175  Sum_probs=89.0

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      +...+++.+.. ..++.+|||+|||+|.++..+++.   +|+++|+++.+++.|++++..+.   + .++++++.+|+.+
T Consensus        18 ~~~~~~~~l~~-~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~-~~~~~~~~~d~~~   92 (177)
T 2esr_A           18 VRGAIFNMIGP-YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTK---A-ENRFTLLKMEAER   92 (177)
T ss_dssp             CHHHHHHHHCS-CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTT---C-GGGEEEECSCHHH
T ss_pred             HHHHHHHHHHh-hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcC---C-CCceEEEECcHHH
Confidence            44566666642 457889999999999999988876   89999999999999999998722   1 1379999999876


Q ss_pred             CC-CCCCCeeEEEEccChH-----HHHHHHH--hccCCCcEEEEEEcCCC
Q psy7830         197 GH-AEGGPYDVIFFGAGTT-----EVSKTIL--SQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       197 ~~-~~~~~fD~Ii~~~~~~-----~l~~~l~--~~LkpGG~Lvi~~~~~~  238 (364)
                      .. ...++||+|+++.++.     .++..+.  +.|+|||++++......
T Consensus        93 ~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  142 (177)
T 2esr_A           93 AIDCLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKTV  142 (177)
T ss_dssp             HHHHBCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             hHHhhcCCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence            32 2235799999997753     3455665  89999999999887754

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.50  E-value=1.4e-13  Score=128.01  Aligned_cols=121  Identities=16%  Similarity=0.173  Sum_probs=100.7

Q ss_pred             CCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCC--
Q psy7830         111 NQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQ--  183 (364)
Q Consensus       111 ~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~--  183 (364)
                      .+..+..|...+.+++.+.  +.++.+|||+|||+|.++..+++.     +|+++|+++.+++.|++++....    +  
T Consensus        78 ~~~~~~~~~~~~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----g~~  151 (280)
T 1i9g_A           78 RGPQVIYPKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCY----GQP  151 (280)
T ss_dssp             SCSCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHH----TSC
T ss_pred             ccceeecHHHHHHHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhc----CCC
Confidence            3455567778888888876  789999999999999999988873     89999999999999999987620    2  


Q ss_pred             CCCEEEEEcCCCCCCCCCCCeeEEEEccChH-HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         184 SKTLEFILKDARWGHAEGGPYDVIFFGAGTT-EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       184 ~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~-~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      .+++++..+|+.......++||+|+++.... .+++++.+.|+|||++++.+...
T Consensus       152 ~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  206 (280)
T 1i9g_A          152 PDNWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATV  206 (280)
T ss_dssp             CTTEEEECSCGGGCCCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             CCcEEEEECchHhcCCCCCceeEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            3589999999987655457899999987654 68899999999999999988764

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.50  E-value=9.3e-14  Score=128.92  Aligned_cols=101  Identities=23%  Similarity=0.262  Sum_probs=88.0

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      +.++.+|||+|||+|.++..+++.    +|+++|+++.+++.+++++..     .+.++++++.+|+...+..+++||+|
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~fD~v  109 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEK-----NGIKNVKFLQANIFSLPFEDSSFDHI  109 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH-----TTCCSEEEEECCGGGCCSCTTCEEEE
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-----cCCCCcEEEEcccccCCCCCCCeeEE
Confidence            468899999999999999998876    999999999999999999887     33468999999998877667899999


Q ss_pred             EEccChHH------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         208 FFGAGTTE------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       208 i~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +++..+++      ++.++.++|||||++++.....
T Consensus       110 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  145 (276)
T 3mgg_A          110 FVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDH  145 (276)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECG
T ss_pred             EEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence            99887754      6789999999999999987553

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.50  E-value=9.4e-14  Score=129.61  Aligned_cols=127  Identities=18%  Similarity=0.250  Sum_probs=95.0

Q ss_pred             CCCceecCCCccChHHHHHHHHHHHhccC-CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcC
Q psy7830         104 DIPYAFANQVVMEPPSYIARCLEQLVDHL-QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISR  178 (364)
Q Consensus       104 d~~l~ig~g~~~s~P~~~a~~l~~L~~~l-~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~  178 (364)
                      +..+.+..+..+.+|.+ ..+++.+.+.+ .++.+|||+|||+|.++..+++.    +|+++|+|+.+++.+++|+..+ 
T Consensus        79 ~~~~~~~~~~~ipr~~t-e~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~-  156 (276)
T 2b3t_A           79 SLPLFVSPATLIPRPDT-ECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHL-  156 (276)
T ss_dssp             TEEEECCTTSCCCCTTH-HHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHH-
T ss_pred             CceEEeCCCCcccCchH-HHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-
Confidence            33344455555555543 33444443333 56789999999999999999854    9999999999999999999873 


Q ss_pred             CCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccCh-------------------------------HHHHHHHHhccCCC
Q psy7830         179 PDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGT-------------------------------TEVSKTILSQLKPN  227 (364)
Q Consensus       179 ~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~-------------------------------~~l~~~l~~~LkpG  227 (364)
                          +.++++++.+|+..... .++||+|++|.++                               ..++..+.+.||||
T Consensus       157 ----~~~~v~~~~~d~~~~~~-~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkpg  231 (276)
T 2b3t_A          157 ----AIKNIHILQSDWFSALA-GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSG  231 (276)
T ss_dssp             ----TCCSEEEECCSTTGGGT-TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEE
T ss_pred             ----CCCceEEEEcchhhhcc-cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCC
Confidence                33589999999876533 4689999998433                               34667889999999


Q ss_pred             cEEEEEEcCC
Q psy7830         228 GRIVAPVGNV  237 (364)
Q Consensus       228 G~Lvi~~~~~  237 (364)
                      |++++..+..
T Consensus       232 G~l~~~~~~~  241 (276)
T 2b3t_A          232 GFLLLEHGWQ  241 (276)
T ss_dssp             EEEEEECCSS
T ss_pred             CEEEEEECch
Confidence            9999986554

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.50  E-value=3.7e-14  Score=128.31  Aligned_cols=92  Identities=22%  Similarity=0.204  Sum_probs=80.7

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC-CCCCC-CCCeeEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR-WGHAE-GGPYDVI  207 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~-~~~~~-~~~fD~I  207 (364)
                      +.++.+|||+|||+|.++..+++.  +|+++|+++.+++.++++.          ++++++++|+. ..+.. +++||+|
T Consensus        46 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~----------~~~~~~~~d~~~~~~~~~~~~fD~v  115 (226)
T 3m33_A           46 LTPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANA----------PHADVYEWNGKGELPAGLGAPFGLI  115 (226)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHC----------TTSEEEECCSCSSCCTTCCCCEEEE
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhC----------CCceEEEcchhhccCCcCCCCEEEE
Confidence            578899999999999999999988  9999999999999999882          47999999995 44444 5789999


Q ss_pred             EEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         208 FFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       208 i~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +++.....++.++.+.|||||+++..
T Consensus       116 ~~~~~~~~~l~~~~~~LkpgG~l~~~  141 (226)
T 3m33_A          116 VSRRGPTSVILRLPELAAPDAHFLYV  141 (226)
T ss_dssp             EEESCCSGGGGGHHHHEEEEEEEEEE
T ss_pred             EeCCCHHHHHHHHHHHcCCCcEEEEe
Confidence            99977778899999999999999933

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.49  E-value=1.5e-13  Score=124.77  Aligned_cols=108  Identities=19%  Similarity=0.277  Sum_probs=87.3

Q ss_pred             HHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC
Q psy7830         125 LEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE  200 (364)
Q Consensus       125 l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~  200 (364)
                      ++.+..++++|.+|||+|||+|++++.+++.    +|+++|+++.+++.|++|++.+.   +. +++++..+|..+....
T Consensus         6 L~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g---l~-~~i~~~~~d~l~~l~~   81 (225)
T 3kr9_A            6 LELVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHG---LK-EKIQVRLANGLAAFEE   81 (225)
T ss_dssp             HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT---CT-TTEEEEECSGGGGCCG
T ss_pred             HHHHHHhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CC-ceEEEEECchhhhccc
Confidence            4555666789999999999999999999986    89999999999999999999843   21 3699999998765443


Q ss_pred             CCCeeEEEEccC----hHHHHHHHHhccCCCcEEEEEEcC
Q psy7830         201 GGPYDVIFFGAG----TTEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       201 ~~~fD~Ii~~~~----~~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ..+||+|++...    ...+++...+.|+++|++|++-..
T Consensus        82 ~~~~D~IviaG~Gg~~i~~Il~~~~~~L~~~~~lVlq~~~  121 (225)
T 3kr9_A           82 TDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQPNN  121 (225)
T ss_dssp             GGCCCEEEEEEECHHHHHHHHHHTGGGCTTCCEEEEEESS
T ss_pred             CcCCCEEEEcCCChHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence            236998875432    346778888999999999997764

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.49  E-value=1.8e-13  Score=125.55  Aligned_cols=118  Identities=20%  Similarity=0.179  Sum_probs=96.9

Q ss_pred             CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCC-
Q psy7830         112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSK-  185 (364)
Q Consensus       112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~-  185 (364)
                      +..+..|.....++..+.  +.++.+|||+|||+|.++..+++.     +|+++|+++.+++.|+++++..     +.+ 
T Consensus        73 ~~~~~~~~~~~~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-----~~~~  145 (255)
T 3mb5_A           73 GPQIVHPKDAALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWA-----GFDD  145 (255)
T ss_dssp             CSCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHH-----TCTT
T ss_pred             ccccccHhHHHHHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHc-----CCCC
Confidence            334445666677777776  789999999999999999888765     8999999999999999999872     223 


Q ss_pred             CEEEEEcCCCCCCCCCCCeeEEEEccChHH-HHHHHHhccCCCcEEEEEEcCC
Q psy7830         186 TLEFILKDARWGHAEGGPYDVIFFGAGTTE-VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       186 ~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~-l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ++++..+|+.+.. ..++||+|+++.+... +++++.+.|+|||++++.....
T Consensus       146 ~v~~~~~d~~~~~-~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  197 (255)
T 3mb5_A          146 RVTIKLKDIYEGI-EEENVDHVILDLPQPERVVEHAAKALKPGGFFVAYTPCS  197 (255)
T ss_dssp             TEEEECSCGGGCC-CCCSEEEEEECSSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             ceEEEECchhhcc-CCCCcCEEEECCCCHHHHHHHHHHHcCCCCEEEEEECCH
Confidence            4999999998654 3468999999887654 7899999999999999987653

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.49  E-value=2e-13  Score=127.58  Aligned_cols=105  Identities=14%  Similarity=0.107  Sum_probs=88.1

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA  199 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~  199 (364)
                      ..+++.+.  ..++.+|||+|||+|.++..+++.  +|+++|+++.+++.+++++..+.     . ++++..+|+.....
T Consensus       110 ~~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~-----~-~~~~~~~d~~~~~~  181 (286)
T 3m70_A          110 GDVVDAAK--IISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKEN-----L-NISTALYDINAANI  181 (286)
T ss_dssp             HHHHHHHH--HSCSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-----C-CEEEEECCGGGCCC
T ss_pred             HHHHHHhh--ccCCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcC-----C-ceEEEEeccccccc
Confidence            34455555  347899999999999999999988  99999999999999999988732     3 89999999987665


Q ss_pred             CCCCeeEEEEccChH--------HHHHHHHhccCCCcEEEEEEc
Q psy7830         200 EGGPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       200 ~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                       .++||+|+++.+++        .+++++.+.|||||++++...
T Consensus       182 -~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  224 (286)
T 3m70_A          182 -QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA  224 (286)
T ss_dssp             -CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             -cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence             67899999988765        367889999999999887553

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.49  E-value=1.3e-13  Score=124.03  Aligned_cols=100  Identities=13%  Similarity=0.200  Sum_probs=84.0

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--CCCCCeeE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH--AEGGPYDV  206 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~--~~~~~fD~  206 (364)
                      .++.+|||||||+|.++..+++.    +|+|+|+++.+++.|++++..     .+.+|++++.+|+....  ...++||.
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~-----~~~~nv~~~~~d~~~l~~~~~~~~~d~  111 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKD-----SEAQNVKLLNIDADTLTDVFEPGEVKR  111 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH-----SCCSSEEEECCCGGGHHHHCCTTSCCE
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHH-----cCCCCEEEEeCCHHHHHhhcCcCCcCE
Confidence            46789999999999999999875    899999999999999999987     33468999999987643  33568999


Q ss_pred             EEEccCh--------------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         207 IFFGAGT--------------TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       207 Ii~~~~~--------------~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      |+++.+.              ..+++.+.+.|||||.|++.+...
T Consensus       112 v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~  156 (213)
T 2fca_A          112 VYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR  156 (213)
T ss_dssp             EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH
T ss_pred             EEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            9887542              357899999999999999987553

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.49  E-value=1.1e-13  Score=123.20  Aligned_cols=95  Identities=23%  Similarity=0.216  Sum_probs=81.3

Q ss_pred             cCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         131 HLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       131 ~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      .+.++.+|||+|||+|.++..+++.  +|+++|+++.+++.+++++           ++.+..+|+.... ..++||+|+
T Consensus        40 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~d~~~~~-~~~~fD~v~  107 (211)
T 3e23_A           40 ELPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL-----------GRPVRTMLFHQLD-AIDAYDAVW  107 (211)
T ss_dssp             TSCTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----------TSCCEECCGGGCC-CCSCEEEEE
T ss_pred             hcCCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc-----------CCceEEeeeccCC-CCCcEEEEE
Confidence            4678899999999999999999987  9999999999999999886           3556788887766 467899999


Q ss_pred             EccChHH--------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         209 FGAGTTE--------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       209 ~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ++..+++        +++++.+.|||||++++.+...
T Consensus       108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  144 (211)
T 3e23_A          108 AHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSG  144 (211)
T ss_dssp             ECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             ecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence            9887753        5689999999999999987553

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.49  E-value=1.4e-13  Score=124.41  Aligned_cols=106  Identities=15%  Similarity=0.118  Sum_probs=87.9

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG  197 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~  197 (364)
                      ..+++.+. ...++.+|||+|||+|.++..+++.    +|+++|+++.+++.+++++..       ..+++++.+|+...
T Consensus        33 ~~~~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~~~  104 (234)
T 3dtn_A           33 GVSVSIAS-VDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG-------NLKVKYIEADYSKY  104 (234)
T ss_dssp             HHHHHTCC-CSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCS-------CTTEEEEESCTTTC
T ss_pred             HHHHHHhh-cCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhcc-------CCCEEEEeCchhcc
Confidence            44444443 2467899999999999999988876    999999999999999998755       23899999999887


Q ss_pred             CCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEcC
Q psy7830         198 HAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       198 ~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +.. ++||+|+++..+++        +++++.+.|||||++++....
T Consensus       105 ~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  150 (234)
T 3dtn_A          105 DFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLV  150 (234)
T ss_dssp             CCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            665 78999999887753        678999999999999987744

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.49  E-value=7.8e-14  Score=127.49  Aligned_cols=95  Identities=15%  Similarity=0.083  Sum_probs=78.0

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--CCCCCeeEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH--AEGGPYDVI  207 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~--~~~~~fD~I  207 (364)
                      .+|.+|||||||+|+.+..+++.   +|++||+++.+++.|+++.....      .+++++.+|+....  ..+++||.|
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~FD~i  132 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT------HKVIPLKGLWEDVAPTLPDGHFDGI  132 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS------SEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC------CceEEEeehHHhhcccccccCCceE
Confidence            68999999999999999999887   89999999999999999987722      47889999876432  335789999


Q ss_pred             EEccCh-----------HHHHHHHHhccCCCcEEEEE
Q psy7830         208 FFGAGT-----------TEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       208 i~~~~~-----------~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +.+...           ..+++++.++|||||+|++.
T Consensus       133 ~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~  169 (236)
T 3orh_A          133 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             EECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             EEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence            875432           23668899999999999864

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.49  E-value=2e-13  Score=127.77  Aligned_cols=111  Identities=16%  Similarity=0.197  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830         118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK  192 (364)
Q Consensus       118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~  192 (364)
                      +.....+++.+.. +.++.+|||+|||+|.++..+++.     +|+++|+|+.+++.+++++...     + .++++.++
T Consensus         7 ~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~-~~v~~~~~   79 (284)
T 3gu3_A            7 DDYVSFLVNTVWK-ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-----P-YDSEFLEG   79 (284)
T ss_dssp             HHHHHHHHHTTSC-CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSS-----S-SEEEEEES
T ss_pred             hHHHHHHHHHHhc-cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhc-----C-CceEEEEc
Confidence            4455666666542 568899999999999999999875     8999999999999999998762     2 38999999


Q ss_pred             CCCCCCCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830         193 DARWGHAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       193 D~~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      |+.+.+. .++||+|+++..+++      +++++.+.|||||++++....
T Consensus        80 d~~~~~~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           80 DATEIEL-NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             CTTTCCC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             chhhcCc-CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence            9988665 468999999887654      678999999999999988766

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.49  E-value=3.1e-13  Score=130.74  Aligned_cols=120  Identities=19%  Similarity=0.070  Sum_probs=99.3

Q ss_pred             CCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCC
Q psy7830         111 NQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSK  185 (364)
Q Consensus       111 ~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~  185 (364)
                      .+..+..+.+.+.++..+.  ..++.+|||+|||+|.+++.++..     +|+|+|+|+.+++.|++|+..     .+..
T Consensus       182 ~~~a~l~~~la~~l~~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~-----~g~~  254 (354)
T 3tma_A          182 ALRGSLTPVLAQALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALA-----SGLS  254 (354)
T ss_dssp             CSSCSCCHHHHHHHHHHTT--CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHH-----TTCT
T ss_pred             CCCCCcCHHHHHHHHHHhC--CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHH-----cCCC
Confidence            3445566777777777765  678899999999999999888873     899999999999999999988     2334


Q ss_pred             CEEEEEcCCCCCCCCCCCeeEEEEccCh--------------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         186 TLEFILKDARWGHAEGGPYDVIFFGAGT--------------TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       186 ~v~~~~~D~~~~~~~~~~fD~Ii~~~~~--------------~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ++++.++|+.+.......||+|++|.++              ..+.+.+.+.|||||++++.+.+.
T Consensus       255 ~i~~~~~D~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~  320 (354)
T 3tma_A          255 WIRFLRADARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP  320 (354)
T ss_dssp             TCEEEECCGGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH
T ss_pred             ceEEEeCChhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            8999999998876655679999998775              236678999999999999988775

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.49  E-value=2.4e-13  Score=120.12  Aligned_cols=99  Identities=12%  Similarity=0.053  Sum_probs=83.7

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF  209 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~  209 (364)
                      +.++ +|||+|||+|.++..+++.  +|+++|+++.+++.+++++....      .++.+..+|+......+++||+|++
T Consensus        28 ~~~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~  100 (202)
T 2kw5_A           28 IPQG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKG------VKITTVQSNLADFDIVADAWEGIVS  100 (202)
T ss_dssp             SCSS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHT------CCEEEECCBTTTBSCCTTTCSEEEE
T ss_pred             CCCC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcC------CceEEEEcChhhcCCCcCCccEEEE
Confidence            5677 9999999999999999988  99999999999999999987732      2799999999877655678999998


Q ss_pred             ccC------hHHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         210 GAG------TTEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       210 ~~~------~~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +..      ...++.++.+.|||||++++.....
T Consensus       101 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  134 (202)
T 2kw5_A          101 IFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAP  134 (202)
T ss_dssp             ECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECT
T ss_pred             EhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            642      1346789999999999999988654

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.49  E-value=6.4e-15  Score=130.72  Aligned_cols=119  Identities=18%  Similarity=0.264  Sum_probs=71.8

Q ss_pred             CCCccChHHH---HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCC
Q psy7830         111 NQVVMEPPSY---IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQ  183 (364)
Q Consensus       111 ~g~~~s~P~~---~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~  183 (364)
                      .+..+.+|.+   +..+++.+.. ..++.+|||+|||+|.++..+++.    +|+++|+++.+++.+++++..+     +
T Consensus         5 ~~~~~p~~~~~~~~~~~~~~l~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----~   78 (215)
T 4dzr_A            5 PDCLIPRPDTEVLVEEAIRFLKR-MPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERF-----G   78 (215)
T ss_dssp             GGGGSCCHHHHHHHHHHHHHHTT-CCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------
T ss_pred             CCccCCCccHHHHHHHHHHHhhh-cCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHh-----C
Confidence            3444555543   3333443331 267899999999999999999886    8999999999999999998762     2


Q ss_pred             CCCEEEEEcCCCCCCCC----CCCeeEEEEccCh--------------------------------HHHHHHHHhccCCC
Q psy7830         184 SKTLEFILKDARWGHAE----GGPYDVIFFGAGT--------------------------------TEVSKTILSQLKPN  227 (364)
Q Consensus       184 ~~~v~~~~~D~~~~~~~----~~~fD~Ii~~~~~--------------------------------~~l~~~l~~~LkpG  227 (364)
                      . +++++++|+......    .++||+|++|.++                                ..+++.+.++||||
T Consensus        79 ~-~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  157 (215)
T 4dzr_A           79 A-VVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARG  157 (215)
T ss_dssp             -----CCHHHHHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSS
T ss_pred             C-ceEEEEcchHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCC
Confidence            2 788899998763221    2789999997554                                34556778899999


Q ss_pred             cE-EEEEEcC
Q psy7830         228 GR-IVAPVGN  236 (364)
Q Consensus       228 G~-Lvi~~~~  236 (364)
                      |+ +++....
T Consensus       158 G~l~~~~~~~  167 (215)
T 4dzr_A          158 RAGVFLEVGH  167 (215)
T ss_dssp             SEEEEEECTT
T ss_pred             CeEEEEEECC
Confidence            99 6665544

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.48  E-value=1.9e-13  Score=122.83  Aligned_cols=96  Identities=18%  Similarity=0.151  Sum_probs=77.7

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC---CCCCCCe
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG---HAEGGPY  204 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~---~~~~~~f  204 (364)
                      +++|.+|||+|||+|..+..+++.    +|+|+|+|+.+++.+.++++.       ..|+.++.+|+...   .+..++|
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~-------~~~v~~~~~d~~~~~~~~~~~~~f  127 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-------RNNIIPLLFDASKPWKYSGIVEKV  127 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-------CSSEEEECSCTTCGGGTTTTCCCE
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc-------CCCeEEEEcCCCCchhhcccccce
Confidence            578999999999999999988874    899999999998877776654       14789999998763   1223689


Q ss_pred             eEEEEccChH----HHHHHHHhccCCCcEEEEEE
Q psy7830         205 DVIFFGAGTT----EVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       205 D~Ii~~~~~~----~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      |+|+++...+    .++.++.+.|||||++++.+
T Consensus       128 D~V~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          128 DLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEeccChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence            9999986533    24789999999999999986

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.48  E-value=2e-13  Score=124.38  Aligned_cols=109  Identities=19%  Similarity=0.326  Sum_probs=88.6

Q ss_pred             HHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC
Q psy7830         125 LEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE  200 (364)
Q Consensus       125 l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~  200 (364)
                      ++.+..++++|.+|||+|||+|++++.+++.    +|+++|+++.+++.|++|++.+.   + .+++++..+|..+...+
T Consensus        12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~g---l-~~~I~~~~gD~l~~~~~   87 (230)
T 3lec_A           12 LQKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHG---L-TSKIDVRLANGLSAFEE   87 (230)
T ss_dssp             HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTT---C-TTTEEEEECSGGGGCCG
T ss_pred             HHHHHHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---C-CCcEEEEECchhhcccc
Confidence            4455667889999999999999999999986    89999999999999999998843   2 24699999999877654


Q ss_pred             CCCeeEEE-EccC---hHHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         201 GGPYDVIF-FGAG---TTEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       201 ~~~fD~Ii-~~~~---~~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ..+||+|+ ++..   ...+++...+.|+++|+|+++-...
T Consensus        88 ~~~~D~IviaGmGg~lI~~IL~~~~~~l~~~~~lIlqp~~~  128 (230)
T 3lec_A           88 ADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVLQPNNR  128 (230)
T ss_dssp             GGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEESSC
T ss_pred             ccccCEEEEeCCchHHHHHHHHHHHHHhCcCCEEEEECCCC
Confidence            44799876 4443   3456778888999999999987553

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.48  E-value=2e-13  Score=128.53  Aligned_cols=99  Identities=14%  Similarity=0.088  Sum_probs=83.9

Q ss_pred             CCCCEEEEECCCccHHHHHHHc---c--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCC------
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEW---L--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEG------  201 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~---~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~------  201 (364)
                      .++.+|||+|||+|..+..+++   .  +|+|+|+|+.+++.|++++....   ....+++++++|+.+.....      
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~~v~~~~~d~~~~~~~~~~~~~~  111 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSP---DTYKNVSFKISSSDDFKFLGADSVDK  111 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC----CCTTEEEEECCTTCCGGGCTTTTTS
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcc---CCCCceEEEEcCHHhCCccccccccC
Confidence            5889999999999999999994   4  99999999999999999987730   01368999999998876555      


Q ss_pred             CCeeEEEEccChH-----HHHHHHHhccCCCcEEEEEE
Q psy7830         202 GPYDVIFFGAGTT-----EVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       202 ~~fD~Ii~~~~~~-----~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ++||+|+++..++     .++.++.+.|||||+|++..
T Consensus       112 ~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i~~  149 (299)
T 3g5t_A          112 QKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAIWG  149 (299)
T ss_dssp             SCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEEEe
Confidence            7899999988875     47889999999999998843

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.48  E-value=2.8e-13  Score=120.65  Aligned_cols=107  Identities=19%  Similarity=0.161  Sum_probs=89.0

Q ss_pred             HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC
Q psy7830         121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH  198 (364)
Q Consensus       121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~  198 (364)
                      ...+++.+.. +.++.+|||+|||+|.++..+++.  +|+++|+++.+++.+++   .+      ..+++++.+|+... 
T Consensus        34 ~~~~~~~l~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~---~~------~~~~~~~~~d~~~~-  102 (218)
T 3ou2_A           34 APAALERLRA-GNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR---HG------LDNVEFRQQDLFDW-  102 (218)
T ss_dssp             HHHHHHHHTT-TTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG---GC------CTTEEEEECCTTSC-
T ss_pred             HHHHHHHHhc-CCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh---cC------CCCeEEEecccccC-
Confidence            4556666653 677889999999999999999887  99999999999999987   21      25899999999877 


Q ss_pred             CCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830         199 AEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       199 ~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      ...++||+|+++..+++        +++++.+.|||||++++......
T Consensus       103 ~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  150 (218)
T 3ou2_A          103 TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDH  150 (218)
T ss_dssp             CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence            44678999999887743        57889999999999999886653

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.48  E-value=3.1e-13  Score=123.90  Aligned_cols=120  Identities=22%  Similarity=0.232  Sum_probs=98.8

Q ss_pred             CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC
Q psy7830         112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT  186 (364)
Q Consensus       112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~  186 (364)
                      +.....|.....+++.+.  +.++.+|||+|||+|.++..+++.     +|+++|+++.+++.+++++..+.    +.++
T Consensus        76 ~~~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~----g~~~  149 (258)
T 2pwy_A           76 SATPTYPKDASAMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFW----QVEN  149 (258)
T ss_dssp             SSCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC----CCCC
T ss_pred             ccccccchHHHHHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhc----CCCC
Confidence            344455666677888776  789999999999999999888764     89999999999999999987730    2368


Q ss_pred             EEEEEcCCCCCCCCCCCeeEEEEccChH-HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         187 LEFILKDARWGHAEGGPYDVIFFGAGTT-EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       187 v~~~~~D~~~~~~~~~~fD~Ii~~~~~~-~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +++..+|+.+.....++||+|+++.... .+++++.+.|+|||++++.....
T Consensus       150 v~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  201 (258)
T 2pwy_A          150 VRFHLGKLEEAELEEAAYDGVALDLMEPWKVLEKAALALKPDRFLVAYLPNI  201 (258)
T ss_dssp             EEEEESCGGGCCCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESCH
T ss_pred             EEEEECchhhcCCCCCCcCEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            9999999987644456899999987654 68899999999999999988764

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.48  E-value=8.7e-14  Score=123.08  Aligned_cols=94  Identities=10%  Similarity=0.009  Sum_probs=82.0

Q ss_pred             CCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEcc
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGA  211 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~  211 (364)
                      .+.+|||+|||+|.++..++..  +|+++|+++.+++.++++.          ++++++.+|+......+++||+|+++.
T Consensus        41 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~----------~~~~~~~~d~~~~~~~~~~fD~v~~~~  110 (203)
T 3h2b_A           41 VDGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTH----------PSVTFHHGTITDLSDSPKRWAGLLAWY  110 (203)
T ss_dssp             CCSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHC----------TTSEEECCCGGGGGGSCCCEEEEEEES
T ss_pred             CCCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC----------CCCeEEeCcccccccCCCCeEEEEehh
Confidence            3889999999999999999988  9999999999999999873          478999999988766568999999977


Q ss_pred             ChH--------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         212 GTT--------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       212 ~~~--------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      .++        .+++++.+.|||||++++.....
T Consensus       111 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  144 (203)
T 3h2b_A          111 SLIHMGPGELPDALVALRMAVEDGGGLLMSFFSG  144 (203)
T ss_dssp             SSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECC
T ss_pred             hHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence            654        46789999999999999988654

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.48  E-value=2.7e-13  Score=126.61  Aligned_cols=106  Identities=19%  Similarity=0.106  Sum_probs=85.8

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH  198 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~  198 (364)
                      ..+++.+.  +.++.+|||+|||+|.++..+++.   +|+++|+|+.+++.+++++....   + .+++++..+|+...+
T Consensus        54 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~---~-~~~~~~~~~d~~~~~  127 (287)
T 1kpg_A           54 DLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSE---N-LRSKRVLLAGWEQFD  127 (287)
T ss_dssp             HHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCC---C-CSCEEEEESCGGGCC
T ss_pred             HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC---C-CCCeEEEECChhhCC
Confidence            33444443  568899999999999999999854   99999999999999999987621   1 248999999987653


Q ss_pred             CCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEcC
Q psy7830         199 AEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       199 ~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                         ++||+|++...+++        +++++.++|||||++++....
T Consensus       128 ---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  170 (287)
T 1kpg_A          128 ---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT  170 (287)
T ss_dssp             ---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             ---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence               68999999876644        578999999999999987754

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.48  E-value=8.8e-14  Score=128.40  Aligned_cols=101  Identities=23%  Similarity=0.182  Sum_probs=85.5

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC---CCCee
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE---GGPYD  205 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~---~~~fD  205 (364)
                      .++.+|||+|||+|..++.++..    +|+++|+++.+++.+++|+..     ++..|++++.+|+.+....   .++||
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~l~~v~~~~~d~~~~~~~~~~~~~fD  153 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEV-----LGLKGARALWGRAEVLAREAGHREAYA  153 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH-----HTCSSEEEEECCHHHHTTSTTTTTCEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-----hCCCceEEEECcHHHhhcccccCCCce
Confidence            46889999999999999988865    899999999999999999988     3346899999998876542   36899


Q ss_pred             EEEEccCh--HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         206 VIFFGAGT--TEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       206 ~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      +|+++...  ..+++.+.++|||||++++..+...
T Consensus       154 ~I~s~a~~~~~~ll~~~~~~LkpgG~l~~~~g~~~  188 (249)
T 3g89_A          154 RAVARAVAPLCVLSELLLPFLEVGGAAVAMKGPRV  188 (249)
T ss_dssp             EEEEESSCCHHHHHHHHGGGEEEEEEEEEEECSCC
T ss_pred             EEEECCcCCHHHHHHHHHHHcCCCeEEEEEeCCCc
Confidence            99997654  5688999999999999998776543

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.48  E-value=2.5e-13  Score=122.15  Aligned_cols=106  Identities=19%  Similarity=0.175  Sum_probs=86.8

Q ss_pred             cCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         131 HLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       131 ~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      +++++.+|||+|||+|.++..++..  +|+++|+++.+++.+++++....-......++.+..+|+.......++||+|+
T Consensus        27 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~  106 (235)
T 3sm3_A           27 YLQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV  106 (235)
T ss_dssp             HCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred             hCCCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence            3578999999999999999999988  99999999999999999887622000112368999999988766667899999


Q ss_pred             EccChH---------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         209 FGAGTT---------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       209 ~~~~~~---------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ++..++         .+++++.+.|||||++++....
T Consensus       107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  143 (235)
T 3sm3_A          107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFG  143 (235)
T ss_dssp             EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECC
Confidence            987664         3678899999999999998654

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.48  E-value=8.3e-14  Score=131.23  Aligned_cols=112  Identities=20%  Similarity=0.231  Sum_probs=83.8

Q ss_pred             HHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCC--------------------
Q psy7830         125 LEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPD--------------------  180 (364)
Q Consensus       125 l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~--------------------  180 (364)
                      ++.+.....++.+|||||||+|.++..++..    +|+|+|+|+.+++.|++++......                    
T Consensus        37 l~~l~~~~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (292)
T 3g07_A           37 LRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEG  116 (292)
T ss_dssp             GGTSCGGGTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC--------------------------
T ss_pred             HHhhhhhhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccc
Confidence            3444333347899999999999999999876    9999999999999999987651100                    


Q ss_pred             --------------------------------CCC-CCCEEEEEcCCCCCC-----CCCCCeeEEEEccChHH-------
Q psy7830         181 --------------------------------LLQ-SKTLEFILKDARWGH-----AEGGPYDVIFFGAGTTE-------  215 (364)
Q Consensus       181 --------------------------------~l~-~~~v~~~~~D~~~~~-----~~~~~fD~Ii~~~~~~~-------  215 (364)
                                                      ... ..++++.++|+....     ...++||+|++...+++       
T Consensus       117 ~~~~~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~  196 (292)
T 3g07_A          117 TTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGD  196 (292)
T ss_dssp             -------------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHH
T ss_pred             cccccccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCH
Confidence                                            000 048999999987544     23578999999988743       


Q ss_pred             -----HHHHHHhccCCCcEEEEEEcC
Q psy7830         216 -----VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       216 -----l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                           +++++.++|||||+|++....
T Consensus       197 ~~~~~~l~~~~~~LkpGG~lil~~~~  222 (292)
T 3g07_A          197 EGLKRMFRRIYRHLRPGGILVLEPQP  222 (292)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             HHHHHHHHHHHHHhCCCcEEEEecCC
Confidence                 467899999999999986543

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.48  E-value=2.8e-13  Score=122.76  Aligned_cols=107  Identities=18%  Similarity=0.221  Sum_probs=87.4

Q ss_pred             HHHHHhccCCCCCEEEEECCCccHHHHHHHcc-eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCC
Q psy7830         124 CLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGG  202 (364)
Q Consensus       124 ~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~  202 (364)
                      ..+.+..+++++.+|||+|||+|.++..+++. +|+++|+++.+++.+++++...     + .++++..+|+...... +
T Consensus        23 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~~~~~-----~-~~~~~~~~d~~~~~~~-~   95 (243)
T 3d2l_A           23 WVAWVLEQVEPGKRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEKAMET-----N-RHVDFWVQDMRELELP-E   95 (243)
T ss_dssp             HHHHHHHHSCTTCEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHHHHHT-----T-CCCEEEECCGGGCCCS-S
T ss_pred             HHHHHHHHcCCCCeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHhhhhc-----C-CceEEEEcChhhcCCC-C
Confidence            34444445678899999999999999999988 9999999999999999998762     1 4799999999876554 7


Q ss_pred             CeeEEEEcc-ChH---------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         203 PYDVIFFGA-GTT---------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       203 ~fD~Ii~~~-~~~---------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +||+|+++. .++         .+++++.++|||||++++.+...
T Consensus        96 ~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  140 (243)
T 3d2l_A           96 PVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSP  140 (243)
T ss_dssp             CEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             CcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCH
Confidence            899999875 433         25678999999999999987553

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.48  E-value=8.4e-14  Score=125.94  Aligned_cols=100  Identities=13%  Similarity=0.037  Sum_probs=84.1

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC---CCCCCee
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH---AEGGPYD  205 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~---~~~~~fD  205 (364)
                      .++.+|||||||+|.++..+++.    .|+|+|+++.+++.|++++..     .+..|++++.+|+....   ..+++||
T Consensus        33 ~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~-----~~l~nv~~~~~Da~~~l~~~~~~~~~d  107 (218)
T 3dxy_A           33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHE-----EGLSNLRVMCHDAVEVLHKMIPDNSLR  107 (218)
T ss_dssp             SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH-----TTCSSEEEECSCHHHHHHHHSCTTCEE
T ss_pred             CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHH-----hCCCcEEEEECCHHHHHHHHcCCCChh
Confidence            46789999999999999999876    799999999999999999887     33468999999987641   3467899


Q ss_pred             EEEEccChH--------------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         206 VIFFGAGTT--------------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       206 ~Ii~~~~~~--------------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      .|+++.+..              .+++.+.+.|||||++++.+...
T Consensus       108 ~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~  153 (218)
T 3dxy_A          108 MVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWE  153 (218)
T ss_dssp             EEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred             eEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCH
Confidence            999984322              37899999999999999988654

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.48  E-value=2.6e-13  Score=122.89  Aligned_cols=111  Identities=15%  Similarity=0.123  Sum_probs=90.5

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG  197 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~  197 (364)
                      ....+.+.+.....++.+|||+|||+|.++..+++.  +|+++|+++.+++.+++++...     +. +++++.+|+...
T Consensus        23 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~-----~~-~~~~~~~d~~~~   96 (246)
T 1y8c_A           23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQ-----GL-KPRLACQDISNL   96 (246)
T ss_dssp             HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHT-----TC-CCEEECCCGGGC
T ss_pred             HHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhc-----CC-CeEEEecccccC
Confidence            445566666543347889999999999999999987  9999999999999999998762     22 799999999876


Q ss_pred             CCCCCCeeEEEEcc-ChHH---------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         198 HAEGGPYDVIFFGA-GTTE---------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       198 ~~~~~~fD~Ii~~~-~~~~---------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ... ++||+|+++. .+++         ++.++.+.|||||++++.+...
T Consensus        97 ~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  145 (246)
T 1y8c_A           97 NIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSY  145 (246)
T ss_dssp             CCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             Ccc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCH
Confidence            654 7899999987 6543         4678999999999999977653

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.48  E-value=2.3e-13  Score=124.95  Aligned_cols=109  Identities=15%  Similarity=0.217  Sum_probs=88.3

Q ss_pred             HHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC
Q psy7830         125 LEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE  200 (364)
Q Consensus       125 l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~  200 (364)
                      ++.+..++++|.+|||+|||+|++++.+++.    +|+++|+++.+++.|++|++.+.   + .+++++..+|..+...+
T Consensus        12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g---l-~~~I~v~~gD~l~~~~~   87 (244)
T 3gnl_A           12 LEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSG---L-TEQIDVRKGNGLAVIEK   87 (244)
T ss_dssp             HHHHHTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT---C-TTTEEEEECSGGGGCCG
T ss_pred             HHHHHHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---C-CceEEEEecchhhccCc
Confidence            4555666789999999999999999999986    89999999999999999998843   2 23699999999876654


Q ss_pred             CCCeeEEEE-ccC---hHHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         201 GGPYDVIFF-GAG---TTEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       201 ~~~fD~Ii~-~~~---~~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ..+||+|++ +..   ...+++...+.|+++|+||++-...
T Consensus        88 ~~~~D~IviagmGg~lI~~IL~~~~~~L~~~~~lIlq~~~~  128 (244)
T 3gnl_A           88 KDAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLILQPNIA  128 (244)
T ss_dssp             GGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEESSC
T ss_pred             cccccEEEEeCCchHHHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            346998764 333   3457788889999999999987543

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.48  E-value=1.9e-13  Score=124.88  Aligned_cols=98  Identities=20%  Similarity=0.169  Sum_probs=83.7

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      ..++.+|||+|||+|.++..++..   +|+++|+++.+++.+++++..       ..+++++.+|+.......++||+|+
T Consensus        91 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~v~  163 (254)
T 1xtp_A           91 GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG-------MPVGKFILASMETATLPPNTYDLIV  163 (254)
T ss_dssp             TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT-------SSEEEEEESCGGGCCCCSSCEEEEE
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhcc-------CCceEEEEccHHHCCCCCCCeEEEE
Confidence            357899999999999999998876   799999999999999998754       1479999999987765567899999


Q ss_pred             EccChHH--------HHHHHHhccCCCcEEEEEEcC
Q psy7830         209 FGAGTTE--------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       209 ~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +...+++        ++.++.++|||||++++....
T Consensus       164 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  199 (254)
T 1xtp_A          164 IQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENC  199 (254)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             EcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence            9877654        467899999999999998753

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.48  E-value=2.5e-14  Score=142.12  Aligned_cols=173  Identities=20%  Similarity=0.168  Sum_probs=119.9

Q ss_pred             eeccCCCccchhhhcccHHHHHHHHHHHHHcCCCCCH-HHHHHHHhCCCCCccCCCc--c--ccccCCCceecCCCccCh
Q psy7830          43 RSEMYDEDNENEENFFYTRSYADFLEGLKERKLLNHP-RVEEAFYAVRRADFINVKP--K--FGFCDIPYAFANQVVMEP  117 (364)
Q Consensus        43 ~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~a~~~v~R~~~~p~~~--~--~~y~d~~l~ig~g~~~s~  117 (364)
                      +.+++..++...|+|+.+.+++++.+.|.+.|....+ .|      .+-...++...  .  ..|.++.+.+++..    
T Consensus       165 ~~~~~~~~~~~~Rvn~~~~~~~~~~~~l~~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~----  234 (429)
T 1sqg_A          165 VEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHAD------YPDAVRLETPAPVHALPGFEDGWVTVQDAS----  234 (429)
T ss_dssp             HHHHTSCCCEEEEECTTTCCHHHHHHHHHHTTCCEECCTT------CTTEEEESSCCCGGGSTTGGGTSEEECCHH----
T ss_pred             HHhCCCCCCeEEEEcCCCCCHHHHHHHHHhCCCceeecCC------CCCEEEECCCCCcccChHHhCCCeEeeCHH----
Confidence            3444445555668999888899998888777632111 11      11111111110  0  34555555555432    


Q ss_pred             HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830         118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD  193 (364)
Q Consensus       118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D  193 (364)
                         ...+...+.  .++|.+|||+|||+|..+..++..    +|+++|+++.+++.+++|+.+     .+. +++++.+|
T Consensus       235 ---s~~~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~-----~g~-~~~~~~~D  303 (429)
T 1sqg_A          235 ---AQGCMTWLA--PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR-----LGM-KATVKQGD  303 (429)
T ss_dssp             ---HHTHHHHHC--CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHH-----TTC-CCEEEECC
T ss_pred             ---HHHHHHHcC--CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHH-----cCC-CeEEEeCc
Confidence               233344444  688999999999999999999876    899999999999999999988     233 57899999


Q ss_pred             CCCCC--CCCCCeeEEEEccChH----------------------------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         194 ARWGH--AEGGPYDVIFFGAGTT----------------------------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       194 ~~~~~--~~~~~fD~Ii~~~~~~----------------------------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +....  ...++||+|+++.+|.                            .++..+.++|||||+|++++.+
T Consensus       304 ~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs  376 (429)
T 1sqg_A          304 GRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS  376 (429)
T ss_dssp             TTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred             hhhchhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            87654  2346899999977652                            4578899999999999998754

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.47  E-value=1.9e-13  Score=124.52  Aligned_cols=99  Identities=19%  Similarity=0.150  Sum_probs=83.5

Q ss_pred             CCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEc
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFG  210 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~  210 (364)
                      ++.+|||+|||+|.++..+++.   +|+++|+++.+++.+++++...     +..+++++.+|+.......++||+|+++
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~fD~v~~~  153 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEE-----GKRVRNYFCCGLQDFTPEPDSYDVIWIQ  153 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGG-----GGGEEEEEECCGGGCCCCSSCEEEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhc-----CCceEEEEEcChhhcCCCCCCEEEEEEc
Confidence            5889999999999999998876   9999999999999999998762     1247999999988776655689999998


Q ss_pred             cChH--------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         211 AGTT--------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       211 ~~~~--------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ..++        .++.++.++|||||++++.....
T Consensus       154 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  188 (241)
T 2ex4_A          154 WVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA  188 (241)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             chhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccC
Confidence            7754        36788999999999999976543

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.47  E-value=1.6e-13  Score=124.46  Aligned_cols=114  Identities=20%  Similarity=0.226  Sum_probs=92.3

Q ss_pred             cChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEE
Q psy7830         115 MEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFI  190 (364)
Q Consensus       115 ~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~  190 (364)
                      +.+|.....+...+.  ..++.+|||+|||+|+.+..+++.    +|+++|+++.+++.|++++....   + ..+++++
T Consensus        37 ~~~~~~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~-~~~v~~~  110 (233)
T 2gpy_A           37 IMDLLGMESLLHLLK--MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALG---L-ESRIELL  110 (233)
T ss_dssp             CCCHHHHHHHHHHHH--HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTT---C-TTTEEEE
T ss_pred             CcCHHHHHHHHHHHh--ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC---C-CCcEEEE
Confidence            456666666666665  568889999999999999998875    89999999999999999998722   1 1479999


Q ss_pred             EcCCCCCCC-C--CCCeeEEEEccCh---HHHHHHHHhccCCCcEEEEEE
Q psy7830         191 LKDARWGHA-E--GGPYDVIFFGAGT---TEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       191 ~~D~~~~~~-~--~~~fD~Ii~~~~~---~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      .+|+..... .  .++||+|+++...   ..+++.+.+.|+|||++++..
T Consensus       111 ~~d~~~~~~~~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  160 (233)
T 2gpy_A          111 FGDALQLGEKLELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSDN  160 (233)
T ss_dssp             CSCGGGSHHHHTTSCCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEET
T ss_pred             ECCHHHHHHhcccCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence            999876422 1  3689999998876   467789999999999999863

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.47  E-value=1.8e-13  Score=124.09  Aligned_cols=104  Identities=16%  Similarity=0.170  Sum_probs=86.7

Q ss_pred             HHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC
Q psy7830         123 RCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA  199 (364)
Q Consensus       123 ~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~  199 (364)
                      .+.+.+.  ..++.+|||+|||+|.++..+++.   +|+++|+++.+++.++++...        .++++..+|+.....
T Consensus        34 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~d~~~~~~  103 (243)
T 3bkw_A           34 ALRAMLP--EVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD--------TGITYERADLDKLHL  103 (243)
T ss_dssp             HHHHHSC--CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS--------SSEEEEECCGGGCCC
T ss_pred             HHHHhcc--ccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc--------CCceEEEcChhhccC
Confidence            3444443  457899999999999999999877   899999999999999987643        479999999987665


Q ss_pred             CCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830         200 EGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       200 ~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ..++||+|+++..+++      +++++.++|||||++++.+..
T Consensus       104 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  146 (243)
T 3bkw_A          104 PQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEH  146 (243)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCC
Confidence            5678999999887754      678999999999999998855

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.47  E-value=2.6e-13  Score=120.33  Aligned_cols=110  Identities=15%  Similarity=0.032  Sum_probs=87.3

Q ss_pred             HHHHHHHHhccCCCCCEEEEECCCccHHH-HHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830         121 IARCLEQLVDHLQNGSRVLDIGSGQGYMA-TAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG  197 (364)
Q Consensus       121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a-~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~  197 (364)
                      ...+++.+. +..++.+|||+|||+|..+ ..++..  +|+++|+|+.+++.+++++....      .++++..+|+...
T Consensus        11 ~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~~   83 (209)
T 2p8j_A           11 LYRFLKYCN-ESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN------FKLNISKGDIRKL   83 (209)
T ss_dssp             HHHHHHHHH-HSSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT------CCCCEEECCTTSC
T ss_pred             HHHHHHHHh-ccCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC------CceEEEECchhhC
Confidence            455566655 3677899999999999874 344444  99999999999999999987622      4788999999887


Q ss_pred             CCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         198 HAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       198 ~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +..+++||+|+++..+++        +++++.+.|||||++++.....
T Consensus        84 ~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  131 (209)
T 2p8j_A           84 PFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTT  131 (209)
T ss_dssp             CSCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred             CCCCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            655678999999876543        5678999999999999987553

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.47  E-value=2.2e-13  Score=128.13  Aligned_cols=128  Identities=12%  Similarity=0.132  Sum_probs=96.5

Q ss_pred             ccCCCceecCCCccChHHH---HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHH
Q psy7830         102 FCDIPYAFANQVVMEPPSY---IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIK  175 (364)
Q Consensus       102 y~d~~l~ig~g~~~s~P~~---~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~  175 (364)
                      |.+..+.+..+..+.+|.+   +..+++.+.  ..++.+|||+|||+|.++..+++.   +|+++|+|+.+++.|++|+.
T Consensus        90 f~~~~~~v~~~~lipr~~te~lv~~~l~~~~--~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~  167 (284)
T 1nv8_A           90 FMGLSFLVEEGVFVPRPETEELVELALELIR--KYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAE  167 (284)
T ss_dssp             ETTEEEECCTTSCCCCTTHHHHHHHHHHHHH--HHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHH
T ss_pred             ECCeEEEeCCCceecChhHHHHHHHHHHHhc--ccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence            4444455556666666643   344444443  236789999999999999998865   99999999999999999998


Q ss_pred             hcCCCCCCCC-CEEEEEcCCCCCCCCCCCe---eEEEEccChH-------------------------HHHHHHH-hccC
Q psy7830         176 ISRPDLLQSK-TLEFILKDARWGHAEGGPY---DVIFFGAGTT-------------------------EVSKTIL-SQLK  225 (364)
Q Consensus       176 ~~~~~~l~~~-~v~~~~~D~~~~~~~~~~f---D~Ii~~~~~~-------------------------~l~~~l~-~~Lk  225 (364)
                      .+     +.. +++++++|+.....  ++|   |+|++|.++.                         .+.+.+. +.|+
T Consensus       168 ~~-----~l~~~v~~~~~D~~~~~~--~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~  240 (284)
T 1nv8_A          168 RH-----GVSDRFFVRKGEFLEPFK--EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDT  240 (284)
T ss_dssp             HT-----TCTTSEEEEESSTTGGGG--GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCC
T ss_pred             Hc-----CCCCceEEEECcchhhcc--cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCC
Confidence            83     233 59999999976432  468   9999984431                         4678899 9999


Q ss_pred             CCcEEEEEEcCCC
Q psy7830         226 PNGRIVAPVGNVW  238 (364)
Q Consensus       226 pGG~Lvi~~~~~~  238 (364)
                      |||.+++.++...
T Consensus       241 pgG~l~~e~~~~q  253 (284)
T 1nv8_A          241 SGKIVLMEIGEDQ  253 (284)
T ss_dssp             TTCEEEEECCTTC
T ss_pred             CCCEEEEEECchH
Confidence            9999999887654

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.47  E-value=1.3e-13  Score=126.27  Aligned_cols=103  Identities=16%  Similarity=0.108  Sum_probs=86.4

Q ss_pred             HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      ...+++.+.  ..++.+|||+|||+|.++..+++.    +|+++|+++.+++.++++.          +++++..+|+..
T Consensus        22 ~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~----------~~~~~~~~d~~~   89 (259)
T 2p35_A           22 ARDLLAQVP--LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL----------PNTNFGKADLAT   89 (259)
T ss_dssp             HHHHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS----------TTSEEEECCTTT
T ss_pred             HHHHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----------CCcEEEECChhh
Confidence            345555544  467889999999999999988875    8999999999999999872          478999999987


Q ss_pred             CCCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830         197 GHAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       197 ~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      .+ .+++||+|+++..+++      ++.++.+.|||||++++.+..
T Consensus        90 ~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  134 (259)
T 2p35_A           90 WK-PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPD  134 (259)
T ss_dssp             CC-CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred             cC-ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence            76 4678999999887764      578899999999999998854

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.47  E-value=7.5e-13  Score=120.59  Aligned_cols=118  Identities=17%  Similarity=0.169  Sum_probs=97.4

Q ss_pred             ccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830         114 VMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL  191 (364)
Q Consensus       114 ~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~  191 (364)
                      .+..|.....+++.+.  +.++.+|||+|||+|.++..+++.  +|+++|+++.+++.|+++.....   + .+++++..
T Consensus        73 ~~~~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~-~~~~~~~~  146 (248)
T 2yvl_A           73 QIIYPKDSFYIALKLN--LNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFN---L-GKNVKFFN  146 (248)
T ss_dssp             CCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTT---C-CTTEEEEC
T ss_pred             CcccchhHHHHHHhcC--CCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcC---C-CCcEEEEE
Confidence            3445667777777765  678999999999999999999886  99999999999999999987722   1 15899999


Q ss_pred             cCCCCCCCCCCCeeEEEEccChH-HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         192 KDARWGHAEGGPYDVIFFGAGTT-EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       192 ~D~~~~~~~~~~fD~Ii~~~~~~-~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +|+.+.....++||+|+++.... .+++.+.+.|+|||++++.....
T Consensus       147 ~d~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  193 (248)
T 2yvl_A          147 VDFKDAEVPEGIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLLPTA  193 (248)
T ss_dssp             SCTTTSCCCTTCBSEEEECSSCGGGGHHHHHHHBCTTCEEEEEESSH
T ss_pred             cChhhcccCCCcccEEEECCcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            99987552346899999987654 67899999999999999998764

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.47  E-value=2.6e-13  Score=125.41  Aligned_cols=103  Identities=15%  Similarity=0.133  Sum_probs=86.1

Q ss_pred             CC-CCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC--CCCCee
Q psy7830         132 LQ-NGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA--EGGPYD  205 (364)
Q Consensus       132 l~-~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~--~~~~fD  205 (364)
                      ++ ++.+|||+|||+|.++..+++.   +|+++|+++.+++.|++|+..+.   + .++++++.+|+.+...  ..++||
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~---~-~~~v~~~~~D~~~~~~~~~~~~fD  121 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQ---L-EDQIEIIEYDLKKITDLIPKERAD  121 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTT---C-TTTEEEECSCGGGGGGTSCTTCEE
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCC---C-cccEEEEECcHHHhhhhhccCCcc
Confidence            56 7899999999999999999987   89999999999999999998733   2 1379999999987653  247899


Q ss_pred             EEEEccCh--------------------------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         206 VIFFGAGT--------------------------TEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       206 ~Ii~~~~~--------------------------~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      +|++|.++                          ..++..+.++|||||++++......
T Consensus       122 ~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  180 (259)
T 3lpm_A          122 IVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPER  180 (259)
T ss_dssp             EEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTT
T ss_pred             EEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHH
Confidence            99998664                          2366889999999999999776554

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.47  E-value=1.1e-13  Score=126.45  Aligned_cols=100  Identities=19%  Similarity=0.141  Sum_probs=83.1

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC---CCCee
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE---GGPYD  205 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~---~~~fD  205 (364)
                      .++.+|||+|||+|..+..++..    +|+++|+++.+++.+++++...     +..+++++++|+.+....   .++||
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~fD  143 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL-----QLENTTFCHDRAETFGQRKDVRESYD  143 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH-----TCSSEEEEESCHHHHTTCTTTTTCEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc-----CCCCEEEEeccHHHhcccccccCCcc
Confidence            47889999999999999998843    9999999999999999999873     345799999998765432   46899


Q ss_pred             EEEEccCh--HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         206 VIFFGAGT--TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       206 ~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +|++....  ..+++.+.++|||||++++..+..
T Consensus       144 ~V~~~~~~~~~~~l~~~~~~LkpgG~l~~~~g~~  177 (240)
T 1xdz_A          144 IVTARAVARLSVLSELCLPLVKKNGLFVALKAAS  177 (240)
T ss_dssp             EEEEECCSCHHHHHHHHGGGEEEEEEEEEEECC-
T ss_pred             EEEEeccCCHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            99987643  467889999999999999876553

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.47  E-value=3.7e-13  Score=119.38  Aligned_cols=113  Identities=16%  Similarity=0.132  Sum_probs=90.4

Q ss_pred             HHHHHHHHHhcc-CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC
Q psy7830         120 YIARCLEQLVDH-LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA  194 (364)
Q Consensus       120 ~~a~~l~~L~~~-l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~  194 (364)
                      ++..+++.+... ..++.+|||+|||+|..+..++..    +|+++|+++.+++.+++++..     .+..++++..+|+
T Consensus        50 ~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~v~~~~~d~  124 (207)
T 1jsx_A           50 LVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHE-----LKLENIEPVQSRV  124 (207)
T ss_dssp             HHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH-----TTCSSEEEEECCT
T ss_pred             HHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-----cCCCCeEEEecch
Confidence            455666666421 114789999999999999988864    999999999999999999987     3345799999999


Q ss_pred             CCCCCCCCCeeEEEEccC--hHHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         195 RWGHAEGGPYDVIFFGAG--TTEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       195 ~~~~~~~~~fD~Ii~~~~--~~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      ..... .++||+|+++..  ...++..+.+.|+|||++++..+...
T Consensus       125 ~~~~~-~~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  169 (207)
T 1jsx_A          125 EEFPS-EPPFDGVISRAFASLNDMVSWCHHLPGEQGRFYALKGQMP  169 (207)
T ss_dssp             TTSCC-CSCEEEEECSCSSSHHHHHHHHTTSEEEEEEEEEEESSCC
T ss_pred             hhCCc-cCCcCEEEEeccCCHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence            87653 468999998753  34678899999999999999877654

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.46  E-value=4.2e-13  Score=133.04  Aligned_cols=119  Identities=19%  Similarity=0.271  Sum_probs=92.1

Q ss_pred             ecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHH-------HHHHHhc
Q psy7830         109 FANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNS-------LKNIKIS  177 (364)
Q Consensus       109 ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a-------~~~~~~~  177 (364)
                      .+.|...  |.+++.+++.+.  +.++.+|||+|||+|+++..+++.    +|+|+|+++.+++.|       ++++...
T Consensus       221 ~~yGet~--p~~v~~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~  296 (433)
T 1u2z_A          221 YVYGELL--PNFLSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLY  296 (433)
T ss_dssp             GCCCCBC--HHHHHHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccccc--HHHHHHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHc
Confidence            3445544  888899999886  789999999999999999999885    799999999999999       8887761


Q ss_pred             CCCCCCCCCEEEEEcCCCCC-C---CCCCCeeEEEEccCh--H---HHHHHHHhccCCCcEEEEEE
Q psy7830         178 RPDLLQSKTLEFILKDARWG-H---AEGGPYDVIFFGAGT--T---EVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       178 ~~~~l~~~~v~~~~~D~~~~-~---~~~~~fD~Ii~~~~~--~---~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      .   +...+++++.+|.... +   ...++||+|+++..+  .   ..+.++.+.|||||+|+++.
T Consensus       297 G---l~~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d  359 (433)
T 1u2z_A          297 G---MRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK  359 (433)
T ss_dssp             T---BCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             C---CCCCceEEEEcCccccccccccccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEee
Confidence            1   1146899999865432 1   113689999997443  2   35579999999999999863

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.46  E-value=1.6e-13  Score=124.30  Aligned_cols=108  Identities=11%  Similarity=0.098  Sum_probs=84.1

Q ss_pred             HHHHHHHhccCC--CCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC
Q psy7830         122 ARCLEQLVDHLQ--NGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA  194 (364)
Q Consensus       122 a~~l~~L~~~l~--~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~  194 (364)
                      ..++..+.....  ++.+|||+|||+|+.+..+++.     +|+++|+++.+++.|+++++...   +..++++++.+|+
T Consensus        42 ~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g---~~~~~i~~~~gda  118 (221)
T 3dr5_A           42 GQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG---YSPSRVRFLLSRP  118 (221)
T ss_dssp             HHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTT---CCGGGEEEECSCH
T ss_pred             HHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCcCcEEEEEcCH
Confidence            445555543222  3349999999999999999873     89999999999999999998822   2113899999998


Q ss_pred             CCCCCC--CCCeeEEEEccChH---HHHHHHHhccCCCcEEEE
Q psy7830         195 RWGHAE--GGPYDVIFFGAGTT---EVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       195 ~~~~~~--~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi  232 (364)
                      .+....  .++||+|+++....   .+++.+.++|||||++++
T Consensus       119 ~~~l~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~  161 (221)
T 3dr5_A          119 LDVMSRLANDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVL  161 (221)
T ss_dssp             HHHGGGSCTTCEEEEEECCCTTTHHHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHhcCCCcCeEEEcCcHHHHHHHHHHHHHHcCCCcEEEE
Confidence            765332  47899999987654   467889999999999997

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.46  E-value=2.3e-13  Score=124.30  Aligned_cols=109  Identities=19%  Similarity=0.267  Sum_probs=86.9

Q ss_pred             HHHHHHHHHhc-cCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830         120 YIARCLEQLVD-HLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD  193 (364)
Q Consensus       120 ~~a~~l~~L~~-~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D  193 (364)
                      +.+.++.-|.. .++||++|||+|||+|+++..+++.     +|+|+|+++.|++.+++++..       .+|+..+.+|
T Consensus        62 laa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~-------~~ni~~V~~d  134 (233)
T 4df3_A           62 LAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD-------RRNIFPILGD  134 (233)
T ss_dssp             HHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT-------CTTEEEEESC
T ss_pred             HHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh-------hcCeeEEEEe
Confidence            44555543332 2689999999999999999999986     899999999999999998765       2589999998


Q ss_pred             CCCC---CCCCCCeeEEEEccChHH----HHHHHHhccCCCcEEEEEEc
Q psy7830         194 ARWG---HAEGGPYDVIFFGAGTTE----VSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       194 ~~~~---~~~~~~fD~Ii~~~~~~~----l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      ....   ....+.+|+|+++...+.    ++.++.+.|||||++++++.
T Consensus       135 ~~~p~~~~~~~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~ik  183 (233)
T 4df3_A          135 ARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMAIK  183 (233)
T ss_dssp             TTCGGGGTTTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccCccccccccceEEEEEEeccCChhHHHHHHHHHHhccCCCEEEEEEe
Confidence            7643   223468999998776643    67889999999999998763

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.46  E-value=1.9e-13  Score=126.97  Aligned_cols=107  Identities=14%  Similarity=0.043  Sum_probs=82.1

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC-
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW-  196 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~-  196 (364)
                      .+..+++.+.  +.++.+|||+|||+|.++..+++.  +|+++|+|+.|++.|++++..+        .+.....+... 
T Consensus        33 ~~~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~--------~v~~~~~~~~~~  102 (261)
T 3iv6_A           33 DRENDIFLEN--IVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADR--------CVTIDLLDITAE  102 (261)
T ss_dssp             HHHHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSS--------CCEEEECCTTSC
T ss_pred             HHHHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc--------cceeeeeecccc
Confidence            5566777665  688999999999999999999988  9999999999999999987551        22222333221 


Q ss_pred             -CCCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         197 -GHAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       197 -~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                       .....++||+|+++..+++        ++..+.++| |||++++++...
T Consensus       103 ~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g  151 (261)
T 3iv6_A          103 IPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLG  151 (261)
T ss_dssp             CCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBS
T ss_pred             cccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccC
Confidence             1111468999999887653        567888899 999999998654

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.46  E-value=1.5e-13  Score=127.01  Aligned_cols=107  Identities=15%  Similarity=0.067  Sum_probs=89.3

Q ss_pred             ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830         116 EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD  193 (364)
Q Consensus       116 s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D  193 (364)
                      ..+.+...+++.+.  ..++.+|||+|||+|.++..+++.  +|+|+|+|+.+++.++++           .+++++.+|
T Consensus        18 ~~~~~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~~d   84 (261)
T 3ege_A           18 PDIRIVNAIINLLN--LPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVH-----------PQVEWFTGY   84 (261)
T ss_dssp             CCHHHHHHHHHHHC--CCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCC-----------TTEEEECCC
T ss_pred             ccHHHHHHHHHHhC--CCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhc-----------cCCEEEECc
Confidence            34557777777775  578999999999999999999987  999999999998876543           279999999


Q ss_pred             CCCCCCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830         194 ARWGHAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       194 ~~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +...+..+++||+|+++..+++      +++++.+.|| ||++++....
T Consensus        85 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~  132 (261)
T 3ege_A           85 AENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFD  132 (261)
T ss_dssp             TTSCCSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred             hhhCCCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcC
Confidence            9887766689999999988754      6789999999 9977776654

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.46  E-value=2.5e-13  Score=126.49  Aligned_cols=103  Identities=26%  Similarity=0.299  Sum_probs=87.6

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA  199 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~  199 (364)
                      ..+++.+.  +.++.+|||+|||+|.++..+++.  +|+|+|+|+.+++.++++.          +++.+..+|+...+.
T Consensus        47 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~----------~~~~~~~~d~~~~~~  114 (279)
T 3ccf_A           47 EDLLQLLN--PQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY----------PHLHFDVADARNFRV  114 (279)
T ss_dssp             CHHHHHHC--CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----------TTSCEEECCTTTCCC
T ss_pred             HHHHHHhC--CCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC----------CCCEEEECChhhCCc
Confidence            44566665  578899999999999999999877  9999999999999998875          368899999987665


Q ss_pred             CCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         200 EGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       200 ~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                       .++||+|+++..+++      ++.++.+.|||||++++.+...
T Consensus       115 -~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~  157 (279)
T 3ccf_A          115 -DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGK  157 (279)
T ss_dssp             -SSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             -CCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence             478999999988764      6789999999999999987654

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.46  E-value=3.1e-13  Score=122.55  Aligned_cols=99  Identities=19%  Similarity=0.142  Sum_probs=82.3

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEc
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFG  210 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~  210 (364)
                      .++.+|||+|||+|.++..+++.  +|+++|+++.+++.+++++....    ...+++++.+|+....+ .++||+|+++
T Consensus        65 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~-~~~fD~v~~~  139 (235)
T 3lcc_A           65 LPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSP----KAEYFSFVKEDVFTWRP-TELFDLIFDY  139 (235)
T ss_dssp             SCCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSG----GGGGEEEECCCTTTCCC-SSCEEEEEEE
T ss_pred             CCCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccC----CCcceEEEECchhcCCC-CCCeeEEEEC
Confidence            34569999999999999999887  99999999999999999986511    02479999999988664 4589999998


Q ss_pred             cChH--------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         211 AGTT--------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       211 ~~~~--------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ..++        .+++++.+.|||||++++....
T Consensus       140 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  173 (235)
T 3lcc_A          140 VFFCAIEPEMRPAWAKSMYELLKPDGELITLMYP  173 (235)
T ss_dssp             SSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             hhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEec
Confidence            7664        3678999999999999987654

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.45  E-value=2.1e-13  Score=129.82  Aligned_cols=171  Identities=11%  Similarity=-0.003  Sum_probs=118.1

Q ss_pred             cchhhhcccHHHHHHHHHHHHHcCCCCCH-H-HHHHHHhCCCCC-----ccCC------C--c--cccccCCCceecCCC
Q psy7830          51 NENEENFFYTRSYADFLEGLKERKLLNHP-R-VEEAFYAVRRAD-----FINV------K--P--KFGFCDIPYAFANQV  113 (364)
Q Consensus        51 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~-~~~a~~~v~R~~-----~~p~------~--~--~~~y~d~~l~ig~g~  113 (364)
                      +...|+|+.+.+++++.+.|.+.|+...+ . ....++.+....     ++|.      .  .  ...|.++.+.+++..
T Consensus        11 p~~lRvN~lk~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~G~~~~Qd~~   90 (309)
T 2b9e_A           11 PRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRA   90 (309)
T ss_dssp             CEEEEECTTTCCHHHHHHHHHHTTCEEEEECSSHHHHHTCCTTEEEECSSSTTEEEECTTCCCTTSHHHHTTSEEECCTG
T ss_pred             CeEEEEeCCCCCHHHHHHHHHhCCCeeeeccccccccccccccccccccCCCceEEeCCCCCcccChHHHCCeEEEECHH
Confidence            44568899988999999998877742211 1 112222221110     1111      1  0  145677777788776


Q ss_pred             ccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEE
Q psy7830         114 VMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLE  188 (364)
Q Consensus       114 ~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~  188 (364)
                      ++    +.+.++   .  +++|++|||+|||+|+.+..++..     +|+++|+++.+++.+++|+++     .+..+++
T Consensus        91 s~----l~~~~l---~--~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r-----~g~~~v~  156 (309)
T 2b9e_A           91 SC----LPAMLL---D--PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLAR-----AGVSCCE  156 (309)
T ss_dssp             GG----HHHHHH---C--CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH-----TTCCSEE
T ss_pred             HH----HHHHHh---C--CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-----cCCCeEE
Confidence            65    444433   3  689999999999999999998874     899999999999999999998     4456899


Q ss_pred             EEEcCCCCCCCCC---CCeeEEEEccChH------------------------------HHHHHHHhccCCCcEEEEEEc
Q psy7830         189 FILKDARWGHAEG---GPYDVIFFGAGTT------------------------------EVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       189 ~~~~D~~~~~~~~---~~fD~Ii~~~~~~------------------------------~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      ++.+|+.......   .+||+|+++.++.                              .++..+.++++ ||+||.++-
T Consensus       157 ~~~~D~~~~~~~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTC  235 (309)
T 2b9e_A          157 LAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTC  235 (309)
T ss_dssp             EEECCGGGSCTTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEES
T ss_pred             EEeCChHhcCccccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECC
Confidence            9999987764322   4799999976651                              12345556676 999998775


Q ss_pred             C
Q psy7830         236 N  236 (364)
Q Consensus       236 ~  236 (364)
                      +
T Consensus       236 s  236 (309)
T 2b9e_A          236 S  236 (309)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.45  E-value=4e-13  Score=119.49  Aligned_cols=102  Identities=19%  Similarity=0.177  Sum_probs=85.6

Q ss_pred             HHHHhccCCCCCEEEEECCCccHHHHHHHcc-eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCC
Q psy7830         125 LEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGP  203 (364)
Q Consensus       125 l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~  203 (364)
                      .+.+.....++.+|||+|||+|.++..+ .. +|+++|+++.+++.++++.          .++.++.+|+...+..+++
T Consensus        27 ~~~l~~~~~~~~~vLdiG~G~G~~~~~l-~~~~v~~vD~s~~~~~~a~~~~----------~~~~~~~~d~~~~~~~~~~   95 (211)
T 2gs9_A           27 ERALKGLLPPGESLLEVGAGTGYWLRRL-PYPQKVGVEPSEAMLAVGRRRA----------PEATWVRAWGEALPFPGES   95 (211)
T ss_dssp             HHHHHTTCCCCSEEEEETCTTCHHHHHC-CCSEEEEECCCHHHHHHHHHHC----------TTSEEECCCTTSCCSCSSC
T ss_pred             HHHHHHhcCCCCeEEEECCCCCHhHHhC-CCCeEEEEeCCHHHHHHHHHhC----------CCcEEEEcccccCCCCCCc
Confidence            3444444568899999999999999988 66 9999999999999999875          3688999999877665678


Q ss_pred             eeEEEEccChHH------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         204 YDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       204 fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ||+|+++..+++      ++.++.+.|||||++++.+.+.
T Consensus        96 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  135 (211)
T 2gs9_A           96 FDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEA  135 (211)
T ss_dssp             EEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             EEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            999999887654      6789999999999999988664

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.45  E-value=2.9e-13  Score=125.46  Aligned_cols=103  Identities=17%  Similarity=0.135  Sum_probs=78.2

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCC-------------------------
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQ-------------------------  183 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~-------------------------  183 (364)
                      ..+|.+|||||||+|.++..++..   +|+|+|+|+.|++.|+++++.+... ++                         
T Consensus        53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~-~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGA-YDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTC-CCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCc-ccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            457889999999999888776655   7999999999999999887542100 00                         


Q ss_pred             CCCEE-EEEcCCCCCCC----CCCCeeEEEEccChHH----------HHHHHHhccCCCcEEEEEEc
Q psy7830         184 SKTLE-FILKDARWGHA----EGGPYDVIFFGAGTTE----------VSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       184 ~~~v~-~~~~D~~~~~~----~~~~fD~Ii~~~~~~~----------l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      ..++. ++.+|+....+    ..++||+|+++..+++          ++.++.++|||||+|+++..
T Consensus       132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~  198 (263)
T 2a14_A          132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT  198 (263)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            01344 88999887422    2468999999988765          35788899999999999863

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.45  E-value=3.1e-13  Score=132.26  Aligned_cols=114  Identities=14%  Similarity=0.098  Sum_probs=90.7

Q ss_pred             ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHH-------hcCCCCCCC
Q psy7830         116 EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIK-------ISRPDLLQS  184 (364)
Q Consensus       116 s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~-------~~~~~~l~~  184 (364)
                      ..|..+..+++.+.  +.++++|||||||+|.+++.++..    +|+|||+++.+++.|+++.+       ...   +..
T Consensus       157 t~~~~i~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~G---l~~  231 (438)
T 3uwp_A          157 TSFDLVAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYG---KKH  231 (438)
T ss_dssp             THHHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHT---BCC
T ss_pred             CCHHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhC---CCC
Confidence            34667888888886  789999999999999999998865    69999999999999988653       211   222


Q ss_pred             CCEEEEEcCCCCCCCCC--CCeeEEEEccCh-----HHHHHHHHhccCCCcEEEEEE
Q psy7830         185 KTLEFILKDARWGHAEG--GPYDVIFFGAGT-----TEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       185 ~~v~~~~~D~~~~~~~~--~~fD~Ii~~~~~-----~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      .+++++++|+.+.+..+  ..||+|++|..+     ...+.++.+.|||||+||+..
T Consensus       232 ~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE  288 (438)
T 3uwp_A          232 AEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSK  288 (438)
T ss_dssp             CEEEEEECCTTSHHHHHHHHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESS
T ss_pred             CCeEEEECcccCCccccccCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEee
Confidence            58999999998765422  469999998764     235678889999999999764

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.45  E-value=3.6e-13  Score=126.81  Aligned_cols=111  Identities=13%  Similarity=0.117  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCC---CCEEEEEcC
Q psy7830         119 SYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQS---KTLEFILKD  193 (364)
Q Consensus       119 ~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~---~~v~~~~~D  193 (364)
                      .....+++.+.   .++.+|||+|||+|.++..+++.  +|+++|+++.+++.|++++..     .+.   .+++++++|
T Consensus        70 ~~~~~~~~~~~---~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~-----~~~~~~~~v~~~~~d  141 (299)
T 3g2m_A           70 SEAREFATRTG---PVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAE-----APADVRDRCTLVQGD  141 (299)
T ss_dssp             HHHHHHHHHHC---CCCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHT-----SCHHHHTTEEEEECB
T ss_pred             HHHHHHHHhhC---CCCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhh-----cccccccceEEEeCc
Confidence            34566666664   34459999999999999999988  999999999999999999876     111   479999999


Q ss_pred             CCCCCCCCCCeeEEEEccC-h--------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         194 ARWGHAEGGPYDVIFFGAG-T--------TEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       194 ~~~~~~~~~~fD~Ii~~~~-~--------~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      +...+. .++||+|++... +        ..+++++.++|||||+|++.+....
T Consensus       142 ~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  194 (299)
T 3g2m_A          142 MSAFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSE  194 (299)
T ss_dssp             TTBCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred             hhcCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence            988765 578999886422 2        3467899999999999999987754

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.45  E-value=2e-13  Score=127.93  Aligned_cols=100  Identities=18%  Similarity=0.096  Sum_probs=86.3

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      +++|.+|||+|||+|.++..+++.   +|+|+|+++.+++.|++|+..+.   +. ++++++++|+.+... .++||+|+
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~---~~-~~v~~~~~D~~~~~~-~~~fD~Vi  197 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNK---VE-DRMSAYNMDNRDFPG-ENIADRIL  197 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTT---CT-TTEEEECSCTTTCCC-CSCEEEEE
T ss_pred             CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcC---CC-ceEEEEECCHHHhcc-cCCccEEE
Confidence            578999999999999999999987   59999999999999999998743   22 359999999988766 57899999


Q ss_pred             EccChH--HHHHHHHhccCCCcEEEEEEcC
Q psy7830         209 FGAGTT--EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       209 ~~~~~~--~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ++.+..  .++..+.+.|||||++++....
T Consensus       198 ~~~p~~~~~~l~~~~~~LkpgG~l~~~~~~  227 (278)
T 2frn_A          198 MGYVVRTHEFIPKALSIAKDGAIIHYHNTV  227 (278)
T ss_dssp             ECCCSSGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             ECCchhHHHHHHHHHHHCCCCeEEEEEEee
Confidence            987754  5788999999999999987654

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.45  E-value=3e-13  Score=127.89  Aligned_cols=104  Identities=20%  Similarity=0.166  Sum_probs=86.0

Q ss_pred             HhccCCCCCEEEEECCCccHHHHHHH--cc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCC
Q psy7830         128 LVDHLQNGSRVLDIGSGQGYMATAKE--WL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGG  202 (364)
Q Consensus       128 L~~~l~~g~~VLDiGcGsG~~a~~la--~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~  202 (364)
                      +...++++.+|||+|||+|..+..++  ..   +|+++|+++.+++.+++++....   + ..+++++++|+.+.+.. +
T Consensus       112 l~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~-~~~v~~~~~d~~~~~~~-~  186 (305)
T 3ocj_A          112 LQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA---L-AGQITLHRQDAWKLDTR-E  186 (305)
T ss_dssp             HHHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTST---T-GGGEEEEECCGGGCCCC-S
T ss_pred             HHhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcC---C-CCceEEEECchhcCCcc-C
Confidence            33346889999999999999999985  22   99999999999999999987621   1 13599999999887665 8


Q ss_pred             CeeEEEEccChHH---------HHHHHHhccCCCcEEEEEEcC
Q psy7830         203 PYDVIFFGAGTTE---------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       203 ~fD~Ii~~~~~~~---------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +||+|+++.++++         +++++.+.|||||++++....
T Consensus       187 ~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  229 (305)
T 3ocj_A          187 GYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLT  229 (305)
T ss_dssp             CEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             CeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence            9999999886653         578999999999999997644

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.45  E-value=2.8e-13  Score=126.37  Aligned_cols=111  Identities=15%  Similarity=0.134  Sum_probs=86.8

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA  194 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~  194 (364)
                      ....+++.+.  +.++.+|||+|||+|.++..+++.     +|+++|+++.+++.+++++..+    .+.+++++..+|+
T Consensus        98 ~~~~~~~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~g~~~v~~~~~d~  171 (275)
T 1yb2_A           98 DASYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF----YDIGNVRTSRSDI  171 (275)
T ss_dssp             --------CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTT----SCCTTEEEECSCT
T ss_pred             hHHHHHHHcC--CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhc----CCCCcEEEEECch
Confidence            3345566554  678999999999999999888763     8999999999999999998772    0346899999999


Q ss_pred             CCCCCCCCCeeEEEEccChH-HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         195 RWGHAEGGPYDVIFFGAGTT-EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       195 ~~~~~~~~~fD~Ii~~~~~~-~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      .... ..++||+|+++.+-. .+++.+.+.|||||++++.....
T Consensus       172 ~~~~-~~~~fD~Vi~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  214 (275)
T 1yb2_A          172 ADFI-SDQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLPNF  214 (275)
T ss_dssp             TTCC-CSCCEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred             hccC-cCCCccEEEEcCcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            8743 346899999976543 57899999999999999988764

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.45  E-value=3.5e-13  Score=131.63  Aligned_cols=111  Identities=16%  Similarity=0.149  Sum_probs=89.5

Q ss_pred             HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCC-CCCEEEEEcCCC
Q psy7830         121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQ-SKTLEFILKDAR  195 (364)
Q Consensus       121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~-~~~v~~~~~D~~  195 (364)
                      ...+++.+.  ..++.+|||+|||+|.++..+++.    +|+++|+|+.+++.+++|+..+.   +. ..++++..+|+.
T Consensus       211 ~~~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ng---l~~~~~v~~~~~D~~  285 (375)
T 4dcm_A          211 ARFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNM---PEALDRCEFMINNAL  285 (375)
T ss_dssp             HHHHHHTCC--CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHC---GGGGGGEEEEECSTT
T ss_pred             HHHHHHhCc--ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcC---CCcCceEEEEechhh
Confidence            345666665  456689999999999999999876    89999999999999999998743   21 126899999998


Q ss_pred             CCCCCCCCeeEEEEccChH-----------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         196 WGHAEGGPYDVIFFGAGTT-----------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       196 ~~~~~~~~fD~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      .... .++||+|++|.+++           .+++.+.+.|||||++++.....
T Consensus       286 ~~~~-~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~  337 (375)
T 4dcm_A          286 SGVE-PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH  337 (375)
T ss_dssp             TTCC-TTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             ccCC-CCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECC
Confidence            7543 46899999998875           25789999999999999977554

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.44  E-value=5.7e-13  Score=122.55  Aligned_cols=109  Identities=18%  Similarity=0.207  Sum_probs=86.5

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      ..++..+.. ..++.+|||+|||+|+.+..+++.     +|+++|+++.+++.|++++....   + .++++++.+|+.+
T Consensus        52 ~~~l~~l~~-~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g---~-~~~v~~~~~d~~~  126 (248)
T 3tfw_A           52 GQFLALLVR-LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAG---V-DQRVTLREGPALQ  126 (248)
T ss_dssp             HHHHHHHHH-HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTT---C-TTTEEEEESCHHH
T ss_pred             HHHHHHHHh-hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---C-CCcEEEEEcCHHH
Confidence            455555532 467899999999999999999875     89999999999999999998722   1 1479999999865


Q ss_pred             CCC---CCCCeeEEEEccChH---HHHHHHHhccCCCcEEEEEEc
Q psy7830         197 GHA---EGGPYDVIFFGAGTT---EVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       197 ~~~---~~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      ...   ..++||+|+++....   .+++.+.++|||||+|++...
T Consensus       127 ~l~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~  171 (248)
T 3tfw_A          127 SLESLGECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNV  171 (248)
T ss_dssp             HHHTCCSCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             HHHhcCCCCCeEEEEECCchHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence            322   134899999988765   467888999999999998543

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.44  E-value=5.1e-13  Score=120.11  Aligned_cols=109  Identities=21%  Similarity=0.207  Sum_probs=85.7

Q ss_pred             HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC
Q psy7830         121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR  195 (364)
Q Consensus       121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~  195 (364)
                      .+.++..+.. ..++.+|||+|||+|+.+..+++.     +|+++|+++.+++.|++++....   + .++++++.+|+.
T Consensus        46 ~~~~l~~l~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~-~~~v~~~~~d~~  120 (223)
T 3duw_A           46 QGKFLQLLVQ-IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERAN---L-NDRVEVRTGLAL  120 (223)
T ss_dssp             HHHHHHHHHH-HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTT---C-TTTEEEEESCHH
T ss_pred             HHHHHHHHHH-hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---C-CCcEEEEEcCHH
Confidence            3455555532 467899999999999999999875     89999999999999999998722   1 136999999986


Q ss_pred             CCCCC-----CCCeeEEEEccChH---HHHHHHHhccCCCcEEEEEE
Q psy7830         196 WGHAE-----GGPYDVIFFGAGTT---EVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       196 ~~~~~-----~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      +....     .++||+|+++....   .+++.+.++|||||++++..
T Consensus       121 ~~~~~~~~~~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~  167 (223)
T 3duw_A          121 DSLQQIENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDN  167 (223)
T ss_dssp             HHHHHHHHTTCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEES
T ss_pred             HHHHHHHhcCCCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            53221     15799999988654   46788999999999888754

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.44  E-value=3.5e-13  Score=123.28  Aligned_cols=106  Identities=13%  Similarity=0.045  Sum_probs=82.3

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHh-cCCCCCCCCCEEEEEcCCCC-CC--CCCCC
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKI-SRPDLLQSKTLEFILKDARW-GH--AEGGP  203 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~-~~~~~l~~~~v~~~~~D~~~-~~--~~~~~  203 (364)
                      ..++.+|||||||+|.++..+++.    .|+|+|+++.+++.|++++.. ......+..|++++.+|+.. +.  ...++
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~  123 (235)
T 3ckk_A           44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ  123 (235)
T ss_dssp             --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTC
T ss_pred             cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcC
Confidence            356779999999999999999876    899999999999999988753 00000124689999999986 32  34578


Q ss_pred             eeEEEEccChH--------------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         204 YDVIFFGAGTT--------------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       204 fD~Ii~~~~~~--------------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ||.|+++.+..              .++..+.++|||||.|++.+...
T Consensus       124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~  171 (235)
T 3ckk_A          124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVL  171 (235)
T ss_dssp             EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred             eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCH
Confidence            99999876543              47889999999999999987653

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.44  E-value=8.7e-13  Score=121.68  Aligned_cols=102  Identities=23%  Similarity=0.190  Sum_probs=83.0

Q ss_pred             HHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCC
Q psy7830         125 LEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGG  202 (364)
Q Consensus       125 l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~  202 (364)
                      .+.+...+.++.+|||+|||+|.++..+++.  +|+++|+|+.+++.++++..         .+  +..+|+...+..++
T Consensus        45 ~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~---------~~--~~~~d~~~~~~~~~  113 (260)
T 2avn_A           45 GSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV---------KN--VVEAKAEDLPFPSG  113 (260)
T ss_dssp             HHHHHHHCCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC---------SC--EEECCTTSCCSCTT
T ss_pred             HHHHHHhcCCCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcC---------CC--EEECcHHHCCCCCC
Confidence            3444433457899999999999999999988  99999999999999998752         13  78889887766567


Q ss_pred             CeeEEEEccChHH-------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         203 PYDVIFFGAGTTE-------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       203 ~fD~Ii~~~~~~~-------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +||+|++...+.+       +++++.+.|||||++++.+.+.
T Consensus       114 ~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  155 (260)
T 2avn_A          114 AFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF  155 (260)
T ss_dssp             CEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             CEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence            8999999765543       5688999999999999988664

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.44  E-value=6.8e-13  Score=125.91  Aligned_cols=99  Identities=16%  Similarity=0.133  Sum_probs=82.8

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      +.++.+|||+|||+|.++..+++.   +|+++|+++.+++.+++++....   + .+++++..+|+...+   ++||+|+
T Consensus        88 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~-~~~v~~~~~d~~~~~---~~fD~v~  160 (318)
T 2fk8_A           88 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASID---T-NRSRQVLLQGWEDFA---EPVDRIV  160 (318)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSC---C-SSCEEEEESCGGGCC---CCCSEEE
T ss_pred             CCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---C-CCceEEEECChHHCC---CCcCEEE
Confidence            468899999999999999998876   99999999999999999987721   1 146999999987653   6899999


Q ss_pred             EccChHH--------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         209 FGAGTTE--------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       209 ~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ++..+++        +++++.++|||||++++.....
T Consensus       161 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  197 (318)
T 2fk8_A          161 SIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVS  197 (318)
T ss_dssp             EESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred             EeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            9866543        5688999999999999977553

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.44  E-value=4.2e-13  Score=120.92  Aligned_cols=109  Identities=13%  Similarity=0.153  Sum_probs=82.1

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      ..++..+.. ..++.+|||+|||+|+.+..+++.     +|+++|+++.+++.|++++....   + .++++++.+|+.+
T Consensus        47 ~~~l~~l~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~-~~~v~~~~~d~~~  121 (221)
T 3u81_A           47 GQIMDAVIR-EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAG---L-QDKVTILNGASQD  121 (221)
T ss_dssp             HHHHHHHHH-HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT---C-GGGEEEEESCHHH
T ss_pred             HHHHHHHHH-hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcC---C-CCceEEEECCHHH
Confidence            334444332 457889999999999999999973     89999999999999999998722   1 1369999999754


Q ss_pred             CCCC-C-----CCeeEEEEccChHHHH------HHHHhccCCCcEEEEEEcC
Q psy7830         197 GHAE-G-----GPYDVIFFGAGTTEVS------KTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       197 ~~~~-~-----~~fD~Ii~~~~~~~l~------~~l~~~LkpGG~Lvi~~~~  236 (364)
                      .... .     ++||+|+++...++..      ..+ ++|||||+|++....
T Consensus       122 ~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~  172 (221)
T 3u81_A          122 LIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVI  172 (221)
T ss_dssp             HGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred             HHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCC
Confidence            3211 1     5899999998765432      334 899999999985433

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.43  E-value=9.4e-13  Score=120.34  Aligned_cols=97  Identities=21%  Similarity=0.203  Sum_probs=81.4

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEc
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFG  210 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~  210 (364)
                      .++.+|||+|||+|.++..+++.  +|+++|+|+.+++.+++++....      .+++++++|+...... ++||+|++.
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~------~~v~~~~~d~~~~~~~-~~fD~v~~~  112 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERN------LKIEFLQGDVLEIAFK-NEFDAVTMF  112 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCCEEEESCGGGCCCC-SCEEEEEEC
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcC------CceEEEECChhhcccC-CCccEEEEc
Confidence            56789999999999999999988  99999999999999999987622      2799999999876543 689999975


Q ss_pred             cCh---------HHHHHHHHhccCCCcEEEEEEcC
Q psy7830         211 AGT---------TEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       211 ~~~---------~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ...         ..+++.+.+.|||||++++.+..
T Consensus       113 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~  147 (252)
T 1wzn_A          113 FSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (252)
T ss_dssp             SSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence            321         23678899999999999987755

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.43  E-value=2.2e-13  Score=124.19  Aligned_cols=107  Identities=11%  Similarity=0.059  Sum_probs=85.4

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA  199 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~  199 (364)
                      ...+..+..++.++.+|||+|||+|.++..+++.  +|+++|+|+.+++.+++++..        .+++++++|+.+...
T Consensus        44 ~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~~~~~~d~~~~~~  115 (245)
T 3ggd_A           44 VVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTA--------ANISYRLLDGLVPEQ  115 (245)
T ss_dssp             HHHHHHHTTTSCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSCC--------TTEEEEECCTTCHHH
T ss_pred             HHHHHHHhhccCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCcc--------cCceEEECccccccc
Confidence            3444445445788999999999999999999987  999999999999999998632        489999999976432


Q ss_pred             CC-----CCeeEEEEccChH--------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         200 EG-----GPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       200 ~~-----~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ..     ..||+|+++..++        .++.++.+.|||||++++....
T Consensus       116 ~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  165 (245)
T 3ggd_A          116 AAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELG  165 (245)
T ss_dssp             HHHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             ccccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            11     2489999987664        3678999999999998876644

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.43  E-value=1.2e-12  Score=122.29  Aligned_cols=102  Identities=21%  Similarity=0.227  Sum_probs=85.3

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC-CCCCeeEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA-EGGPYDVI  207 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~-~~~~fD~I  207 (364)
                      +.++.+|||+|||+|.++..+++.   +|+++|+++.+++.|++++....   + ..++.++.+|+...+. ..++||+|
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~-~~~v~~~~~d~~~~~~~~~~~fD~v  137 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMK---R-RFKVFFRAQDSYGRHMDLGKEFDVI  137 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSC---C-SSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC---C-CccEEEEECCccccccCCCCCcCEE
Confidence            578999999999999999888765   89999999999999999987621   1 1479999999987654 35789999


Q ss_pred             EEccChH----------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         208 FFGAGTT----------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       208 i~~~~~~----------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +++..++          .++.++.+.|||||++++.+.+.
T Consensus       138 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  177 (298)
T 1ri5_A          138 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR  177 (298)
T ss_dssp             EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             EECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            9987763          25688999999999999988664

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.43  E-value=1.5e-13  Score=137.19  Aligned_cols=124  Identities=16%  Similarity=0.110  Sum_probs=99.4

Q ss_pred             ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHH
Q psy7830         100 FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNI  174 (364)
Q Consensus       100 ~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~  174 (364)
                      ..|.++.+.+++.+++    +++.+   +.  +++|++|||+|||+|..+..++..     +|+++|+++.+++.+++|+
T Consensus        80 ~~~~~G~~~vQd~ss~----l~~~~---L~--~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~  150 (456)
T 3m4x_A           80 FLHQAGYEYSQEPSAM----IVGTA---AA--AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENI  150 (456)
T ss_dssp             HHHHTTSCEECCTTTH----HHHHH---HC--CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHH
T ss_pred             hHHhCCcEEEECHHHH----HHHHH---cC--CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHH
Confidence            4577777888876655    44443   33  688999999999999999998875     8999999999999999999


Q ss_pred             HhcCCCCCCCCCEEEEEcCCCCCCC-CCCCeeEEEEccChH----------------------------HHHHHHHhccC
Q psy7830         175 KISRPDLLQSKTLEFILKDARWGHA-EGGPYDVIFFGAGTT----------------------------EVSKTILSQLK  225 (364)
Q Consensus       175 ~~~~~~~l~~~~v~~~~~D~~~~~~-~~~~fD~Ii~~~~~~----------------------------~l~~~l~~~Lk  225 (364)
                      ++     .+..++.+..+|+..... ..+.||+|+++.+|.                            .++..+.++||
T Consensus       151 ~r-----~g~~nv~v~~~Da~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk  225 (456)
T 3m4x_A          151 ER-----WGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLK  225 (456)
T ss_dssp             HH-----HTCSSEEEECCCHHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEE
T ss_pred             HH-----cCCCceEEEeCCHHHhhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            98     345689999999876532 246899999988741                            35678889999


Q ss_pred             CCcEEEEEEcCC
Q psy7830         226 PNGRIVAPVGNV  237 (364)
Q Consensus       226 pGG~Lvi~~~~~  237 (364)
                      |||+|+.++.+-
T Consensus       226 pGG~LvYsTCs~  237 (456)
T 3m4x_A          226 NKGQLIYSTCTF  237 (456)
T ss_dssp             EEEEEEEEESCC
T ss_pred             CCcEEEEEEeec
Confidence            999999988654

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.43  E-value=2.8e-13  Score=116.41  Aligned_cols=99  Identities=14%  Similarity=0.169  Sum_probs=83.3

Q ss_pred             HHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC
Q psy7830         123 RCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE  200 (364)
Q Consensus       123 ~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~  200 (364)
                      .+++.+.  +.++.+|||+|||+|.++..+++.  +|+++|+++.+++.++++.          +++++..+|   ....
T Consensus         8 ~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~----------~~v~~~~~d---~~~~   72 (170)
T 3i9f_A            8 EYLPNIF--EGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKF----------DSVITLSDP---KEIP   72 (170)
T ss_dssp             TTHHHHH--SSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHC----------TTSEEESSG---GGSC
T ss_pred             HHHHhcC--cCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhC----------CCcEEEeCC---CCCC
Confidence            3455555  678899999999999999999988  9999999999999999872          478999998   3334


Q ss_pred             CCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830         201 GGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +++||+|+++..+++      +++++.+.|||||++++....
T Consensus        73 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  114 (170)
T 3i9f_A           73 DNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWR  114 (170)
T ss_dssp             TTCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcC
Confidence            578999999887754      678999999999999997644

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.43  E-value=5.5e-13  Score=121.80  Aligned_cols=111  Identities=17%  Similarity=0.224  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHh-ccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830         119 SYIARCLEQLV-DHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK  192 (364)
Q Consensus       119 ~~~a~~l~~L~-~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~  192 (364)
                      .+.+.++..|. -.+++|++|||+|||+|+++..+++.     +|+|+|+++.+++...+.+...       .|+.++.+
T Consensus        60 kla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r-------~nv~~i~~  132 (232)
T 3id6_C           60 KLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR-------PNIFPLLA  132 (232)
T ss_dssp             HHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC-------TTEEEEEC
T ss_pred             HHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-------CCeEEEEc
Confidence            35566666553 12679999999999999999998875     8999999999986665554441       48999999


Q ss_pred             CCCCCCC---CCCCeeEEEEccChHH----HHHHHHhccCCCcEEEEEEcC
Q psy7830         193 DARWGHA---EGGPYDVIFFGAGTTE----VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       193 D~~~~~~---~~~~fD~Ii~~~~~~~----l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      |+.....   ..++||+|+++.+...    +...+.+.|||||+|++++..
T Consensus       133 Da~~~~~~~~~~~~~D~I~~d~a~~~~~~il~~~~~~~LkpGG~lvisik~  183 (232)
T 3id6_C          133 DARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKA  183 (232)
T ss_dssp             CTTCGGGTTTTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             ccccchhhhccccceEEEEecCCChhHHHHHHHHHHHhCCCCeEEEEEEcc
Confidence            9875421   1358999999987643    334556699999999998743

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.43  E-value=8.8e-13  Score=114.83  Aligned_cols=96  Identities=19%  Similarity=0.256  Sum_probs=81.7

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF  209 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~  209 (364)
                      +.++.+|||+|||+|.++..+++.  +|+++|+++.+++.+++++          .++.++.+|+.......++||+|++
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~----------~~~~~~~~d~~~~~~~~~~~D~i~~  113 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDF----------PEARWVVGDLSVDQISETDFDLIVS  113 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----------TTSEEEECCTTTSCCCCCCEEEEEE
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhC----------CCCcEEEcccccCCCCCCceeEEEE
Confidence            478899999999999999999987  9999999999999999875          3688999999876555578999999


Q ss_pred             c-cChH--------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         210 G-AGTT--------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       210 ~-~~~~--------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      + ..++        .++..+.+.|+|||++++.....
T Consensus       114 ~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~  150 (195)
T 3cgg_A          114 AGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG  150 (195)
T ss_dssp             CCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             CCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            7 3432        36788999999999999987654

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.43  E-value=3.1e-13  Score=123.66  Aligned_cols=112  Identities=11%  Similarity=-0.045  Sum_probs=86.8

Q ss_pred             CCCccCh-HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHc-------c-eEEEEeCCHHHHHHHHHHHHhcCCCC
Q psy7830         111 NQVVMEP-PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEW-------L-SSVRQLLLPETLNNSLKNIKISRPDL  181 (364)
Q Consensus       111 ~g~~~s~-P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~-------~-~V~~vDis~~~l~~a~~~~~~~~~~~  181 (364)
                      .+..+++ |.+...+.+.+.  ..++.+|||||||+|+.+..+++       . +|+++|+++.+++.|+.         
T Consensus        59 ~~~~~~~~p~~~~~l~~~l~--~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~---------  127 (236)
T 2bm8_A           59 RGLRMLKDPDTQAVYHDMLW--ELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS---------  127 (236)
T ss_dssp             TTEECCSCHHHHHHHHHHHH--HHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG---------
T ss_pred             ccccccCCHHHHHHHHHHHH--hcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc---------
Confidence            3455566 888777777776  34678999999999999998875       2 89999999999988861         


Q ss_pred             CCCCCEEEEEcCCCCC---CC-CCCCeeEEEEccC---hHHHHHHHHh-ccCCCcEEEEEE
Q psy7830         182 LQSKTLEFILKDARWG---HA-EGGPYDVIFFGAG---TTEVSKTILS-QLKPNGRIVAPV  234 (364)
Q Consensus       182 l~~~~v~~~~~D~~~~---~~-~~~~fD~Ii~~~~---~~~l~~~l~~-~LkpGG~Lvi~~  234 (364)
                      + .++++++++|+...   .. ...+||+|+++..   ...++.++.+ +|||||+|++..
T Consensus       128 ~-~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~d  187 (236)
T 2bm8_A          128 D-MENITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIED  187 (236)
T ss_dssp             G-CTTEEEEECCSSCSGGGGGGSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred             c-CCceEEEECcchhHHHHHhhccCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEEEEEe
Confidence            1 15899999999874   22 2247999998765   3456778886 999999999853

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.43  E-value=3.2e-13  Score=123.18  Aligned_cols=114  Identities=20%  Similarity=0.152  Sum_probs=90.0

Q ss_pred             ccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCC-CE
Q psy7830         114 VMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSK-TL  187 (364)
Q Consensus       114 ~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~-~v  187 (364)
                      .+..|.....+...+.  ..++.+|||+|||+|+.+..+++.     +|+++|+++.+++.|++++...     +.. ++
T Consensus        42 ~~~~~~~~~~l~~l~~--~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----g~~~~v  114 (239)
T 2hnk_A           42 MQISPEEGQFLNILTK--ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKEN-----GLENKI  114 (239)
T ss_dssp             CSCCHHHHHHHHHHHH--HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT-----TCGGGE
T ss_pred             cccCHHHHHHHHHHHH--hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCCE
Confidence            3456666666655554  567899999999999999998864     8999999999999999998872     223 59


Q ss_pred             EEEEcCCCCCCC---------------C-C-CCeeEEEEccChH---HHHHHHHhccCCCcEEEEEE
Q psy7830         188 EFILKDARWGHA---------------E-G-GPYDVIFFGAGTT---EVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       188 ~~~~~D~~~~~~---------------~-~-~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ++..+|+.....               . . ++||+|+++....   .+++.+.++|||||++++..
T Consensus       115 ~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          115 FLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             EEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence            999999765321               1 1 6899999987765   46689999999999999865

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.42  E-value=4.2e-13  Score=120.67  Aligned_cols=108  Identities=25%  Similarity=0.264  Sum_probs=84.9

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      +.++..+.. ..++.+|||+|||+|+.+..+++.     +|+++|+++.+++.+++++....   + .++++++.+|+.+
T Consensus        53 ~~~l~~l~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~-~~~v~~~~~d~~~  127 (225)
T 3tr6_A           53 AQLLALLVK-LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAG---L-SDKIGLRLSPAKD  127 (225)
T ss_dssp             HHHHHHHHH-HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTT---C-TTTEEEEESCHHH
T ss_pred             HHHHHHHHH-hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCC---C-CCceEEEeCCHHH
Confidence            444444432 457889999999999999999874     89999999999999999998722   1 1369999999865


Q ss_pred             CCCC------CCCeeEEEEccChH---HHHHHHHhccCCCcEEEEEE
Q psy7830         197 GHAE------GGPYDVIFFGAGTT---EVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       197 ~~~~------~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ....      .++||+|+++....   .+++.+.++|||||+|++.-
T Consensus       128 ~~~~~~~~~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  174 (225)
T 3tr6_A          128 TLAELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDN  174 (225)
T ss_dssp             HHHHHHTTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHhhhccCCCCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            4221      16899999987753   46789999999999999754

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.42  E-value=1.7e-13  Score=128.31  Aligned_cols=114  Identities=21%  Similarity=0.123  Sum_probs=88.4

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG  197 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~  197 (364)
                      ....+.+.+.  ..++.+|||+|||+|..+..++..  +|+|+|+|+.+++.|++++...... ....++.+..+|+...
T Consensus        45 ~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~d~~~~  121 (293)
T 3thr_A           45 YKAWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKE-PAFDKWVIEEANWLTL  121 (293)
T ss_dssp             HHHHHHHHHH--HTTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTS-HHHHTCEEEECCGGGH
T ss_pred             HHHHHHHHhc--ccCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccc-cccceeeEeecChhhC
Confidence            3455555555  467889999999999999999988  9999999999999999887441100 1124788999998765


Q ss_pred             C---CCCCCeeEEEEc-cCh-------------HHHHHHHHhccCCCcEEEEEEcC
Q psy7830         198 H---AEGGPYDVIFFG-AGT-------------TEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       198 ~---~~~~~fD~Ii~~-~~~-------------~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      .   ...++||+|++. ..+             ..+++++.++|||||++++.+.+
T Consensus       122 ~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  177 (293)
T 3thr_A          122 DKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  177 (293)
T ss_dssp             HHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             ccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            4   446789999997 444             34678999999999999998865

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.42  E-value=3e-13  Score=123.06  Aligned_cols=105  Identities=18%  Similarity=0.094  Sum_probs=83.0

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG  197 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~  197 (364)
                      +...+...+. .++++.+|||+|||+|.++..+++.  +|+|+|+|+.+++.++++             ++++.+|+.+.
T Consensus        28 ~~~~~~~~l~-~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-------------~~~~~~d~~~~   93 (240)
T 3dli_A           28 VKARLRRYIP-YFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK-------------FNVVKSDAIEY   93 (240)
T ss_dssp             HHHHHGGGGG-GTTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT-------------SEEECSCHHHH
T ss_pred             HHHHHHHHHh-hhcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh-------------cceeeccHHHH
Confidence            3344444433 4678899999999999999999887  999999999999988753             56778887654


Q ss_pred             --CCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830         198 --HAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       198 --~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                        +..+++||+|+++..+++        +++++.++|||||++++.+....
T Consensus        94 ~~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  144 (240)
T 3dli_A           94 LKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPT  144 (240)
T ss_dssp             HHTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTT
T ss_pred             hhhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence              334578999999877653        67899999999999999886643

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.42  E-value=9.3e-13  Score=119.00  Aligned_cols=105  Identities=14%  Similarity=0.124  Sum_probs=85.0

Q ss_pred             HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC
Q psy7830         121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH  198 (364)
Q Consensus       121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~  198 (364)
                      ...+.+.+..+..++.+|||+|||+|.++..+++.  +|+++|+++.+++.++++.          ++++++.+|+....
T Consensus        27 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~----------~~~~~~~~d~~~~~   96 (239)
T 3bxo_A           27 ASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL----------PDATLHQGDMRDFR   96 (239)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC----------TTCEEEECCTTTCC
T ss_pred             HHHHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC----------CCCEEEECCHHHcc
Confidence            34555566555578899999999999999999887  8999999999999998874          36889999998765


Q ss_pred             CCCCCeeEEEEcc-ChH---------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         199 AEGGPYDVIFFGA-GTT---------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       199 ~~~~~fD~Ii~~~-~~~---------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      . .++||+|++.. .++         .+++++.+.|||||++++....
T Consensus        97 ~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  143 (239)
T 3bxo_A           97 L-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWW  143 (239)
T ss_dssp             C-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred             c-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence            5 57899999533 332         3568899999999999997643

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.42  E-value=1.4e-12  Score=123.56  Aligned_cols=118  Identities=17%  Similarity=0.124  Sum_probs=89.1

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcC-C-CCCCCCCEEEEEcCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISR-P-DLLQSKTLEFILKDA  194 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~-~-~~l~~~~v~~~~~D~  194 (364)
                      +...+++.+...+.++.+|||+|||+|.++..+++.   +|+++|+++.+++.++++..... . ......+++++++|+
T Consensus        20 l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~   99 (313)
T 3bgv_A           20 LIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADS   99 (313)
T ss_dssp             HHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCT
T ss_pred             HHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecc
Confidence            445556666544457889999999999999988865   99999999999999999876510 0 000124799999999


Q ss_pred             CCCC----C--CCCCeeEEEEccChHH----------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         195 RWGH----A--EGGPYDVIFFGAGTTE----------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       195 ~~~~----~--~~~~fD~Ii~~~~~~~----------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ....    .  ..++||+|+++..+++          ++.++.++|||||.+++++...
T Consensus       100 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  158 (313)
T 3bgv_A          100 SKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS  158 (313)
T ss_dssp             TTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             cccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence            8764    2  2358999999887743          5678899999999999998764

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.42  E-value=1e-12  Score=122.51  Aligned_cols=115  Identities=17%  Similarity=0.178  Sum_probs=95.5

Q ss_pred             cChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCC-CCEE
Q psy7830         115 MEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQS-KTLE  188 (364)
Q Consensus       115 ~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~-~~v~  188 (364)
                      +..|...+.++..+.  +.++.+|||+|||+|.++..+++.     +|+++|+++.+++.|++++...     +. ++++
T Consensus        95 ~~~~~~~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~v~  167 (277)
T 1o54_A           95 IVYPKDSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW-----GLIERVT  167 (277)
T ss_dssp             CCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT-----TCGGGEE
T ss_pred             ccCHHHHHHHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc-----CCCCCEE
Confidence            345556677777776  788999999999999999888764     8999999999999999998872     22 4799


Q ss_pred             EEEcCCCCCCCCCCCeeEEEEccChH-HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         189 FILKDARWGHAEGGPYDVIFFGAGTT-EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       189 ~~~~D~~~~~~~~~~fD~Ii~~~~~~-~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +..+|+.+.. ..++||+|+++.+.. .+++.+.+.|+|||++++.....
T Consensus       168 ~~~~d~~~~~-~~~~~D~V~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (277)
T 1o54_A          168 IKVRDISEGF-DEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTT  216 (277)
T ss_dssp             EECCCGGGCC-SCCSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred             EEECCHHHcc-cCCccCEEEECCcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            9999988763 346899999987765 68899999999999999988753

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.41  E-value=9.4e-13  Score=120.72  Aligned_cols=106  Identities=14%  Similarity=0.059  Sum_probs=83.4

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhc-CCCCC--CCCCEEEEEcCCCCC-C--CCC
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKIS-RPDLL--QSKTLEFILKDARWG-H--AEG  201 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~-~~~~l--~~~~v~~~~~D~~~~-~--~~~  201 (364)
                      +.++.+|||+|||+|.++..++..    +|+|+|+|+.+++.+++++..+ .....  +..|++++.+|+... .  ...
T Consensus        47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~  126 (246)
T 2vdv_E           47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK  126 (246)
T ss_dssp             BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence            457889999999999999999876    7999999999999999988762 00000  346899999998863 2  335


Q ss_pred             CCeeEEEEccChH--------------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         202 GPYDVIFFGAGTT--------------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       202 ~~fD~Ii~~~~~~--------------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +.+|.|+++.+-.              .++..+.++|+|||+|++.+...
T Consensus       127 ~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~  176 (246)
T 2vdv_E          127 GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVK  176 (246)
T ss_dssp             TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred             cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccH
Confidence            7899998764432              58899999999999999976543

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.41  E-value=7.7e-13  Score=129.39  Aligned_cols=104  Identities=16%  Similarity=0.143  Sum_probs=84.7

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCC---CCCCCCCEEEEEcCCCCC------
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRP---DLLQSKTLEFILKDARWG------  197 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~---~~l~~~~v~~~~~D~~~~------  197 (364)
                      +.++.+|||+|||+|..+..+++.     +|+++|+++.+++.+++++.....   ..+..++++++.+|+...      
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            457899999999999999888774     899999999999999998764100   001125899999999875      


Q ss_pred             CCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEc
Q psy7830         198 HAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       198 ~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      +..+++||+|+++..+++      +++++.++|||||+|++...
T Consensus       161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~  204 (383)
T 4fsd_A          161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDV  204 (383)
T ss_dssp             CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEe
Confidence            555678999999988764      67899999999999999753

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.41  E-value=1.2e-12  Score=122.32  Aligned_cols=101  Identities=19%  Similarity=0.119  Sum_probs=87.3

Q ss_pred             cCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeE
Q psy7830         131 HLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDV  206 (364)
Q Consensus       131 ~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~  206 (364)
                      .+.++.+|||+|||+|.++..+++.    +|+++|+++.+++.|++|++.+.     ..++.++.+|+.+. ...++||+
T Consensus       116 ~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~-----l~~~~~~~~d~~~~-~~~~~~D~  189 (272)
T 3a27_A          116 ISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNK-----LNNVIPILADNRDV-ELKDVADR  189 (272)
T ss_dssp             SCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTT-----CSSEEEEESCGGGC-CCTTCEEE
T ss_pred             hcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCEEEEECChHHc-CccCCceE
Confidence            3678999999999999999999875    89999999999999999998843     46899999999877 33568999


Q ss_pred             EEEccCh--HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         207 IFFGAGT--TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       207 Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      |+++.+.  ..++..+.+.|+|||+++++....
T Consensus       190 Vi~d~p~~~~~~l~~~~~~LkpgG~l~~s~~~~  222 (272)
T 3a27_A          190 VIMGYVHKTHKFLDKTFEFLKDRGVIHYHETVA  222 (272)
T ss_dssp             EEECCCSSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             EEECCcccHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence            9999874  457888999999999999988654

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.40  E-value=1.2e-12  Score=125.73  Aligned_cols=120  Identities=13%  Similarity=0.052  Sum_probs=90.9

Q ss_pred             ccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830         114 VMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL  191 (364)
Q Consensus       114 ~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~  191 (364)
                      .+.+......+.+.+.. ..++.+|||+|||+|.++..+++.  +|+++|+|+.+++.|++|+..+.   +...++++++
T Consensus       134 f~dq~~~~~~l~~~~~~-~~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~g---l~~~~v~~i~  209 (332)
T 2igt_A          134 FPEQIVHWEWLKNAVET-ADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAG---LEQAPIRWIC  209 (332)
T ss_dssp             CGGGHHHHHHHHHHHHH-SSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHT---CTTSCEEEEC
T ss_pred             chHHHHHHHHHHHHHHh-cCCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcC---CCccceEEEE
Confidence            44333344445555532 356789999999999999999987  99999999999999999998743   2212499999


Q ss_pred             cCCCCCCCC----CCCeeEEEEccCh----------------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         192 KDARWGHAE----GGPYDVIFFGAGT----------------TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       192 ~D~~~~~~~----~~~fD~Ii~~~~~----------------~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +|+.+....    .++||+|+++.+.                ..++..+.++|+|||++++.....
T Consensus       210 ~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~  275 (332)
T 2igt_A          210 EDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS  275 (332)
T ss_dssp             SCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             CcHHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence            998765421    4589999997662                346788899999999988776554

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.40  E-value=3.6e-12  Score=133.41  Aligned_cols=116  Identities=13%  Similarity=0.115  Sum_probs=92.6

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhc-CCCCCCCCCEEEEEcC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKIS-RPDLLQSKTLEFILKD  193 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~-~~~~l~~~~v~~~~~D  193 (364)
                      .+..+++.+.  ..++.+|||+|||+|.++..+++.     +|+|+|+++.+++.|++++... .....+..+++++++|
T Consensus       709 Rle~LLelL~--~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGD  786 (950)
T 3htx_A          709 RVEYALKHIR--ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGS  786 (950)
T ss_dssp             HHHHHHHHHH--HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESC
T ss_pred             HHHHHHHHhc--ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECc
Confidence            3445566655  358899999999999999999876     7999999999999999977641 1001234689999999


Q ss_pred             CCCCCCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEcCCC
Q psy7830         194 ARWGHAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       194 ~~~~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      +...+..+++||+|+++..+++        +++++.++|||| .+++++.+..
T Consensus       787 a~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~e  838 (950)
T 3htx_A          787 ILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYE  838 (950)
T ss_dssp             TTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGG
T ss_pred             hHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCch
Confidence            9988776789999999988865        456889999999 8888887653

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.40  E-value=1.2e-13  Score=126.78  Aligned_cols=108  Identities=19%  Similarity=0.238  Sum_probs=85.8

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      ..++..+.. ..++.+|||+|||+|+.+..+++.     +|+++|+++.+++.|+++++...   + .++++++.+|+.+
T Consensus        49 ~~~l~~l~~-~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g---~-~~~i~~~~gda~~  123 (242)
T 3r3h_A           49 AQFMQMLIR-LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAK---Q-EHKIKLRLGPALD  123 (242)
T ss_dssp             HHHHHHHHH-HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTT---C-TTTEEEEESCHHH
T ss_pred             HHHHHHHHh-hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---C-CCcEEEEEcCHHH
Confidence            444444432 456789999999999999999974     89999999999999999998822   1 2489999999876


Q ss_pred             CCCC------CCCeeEEEEccChH---HHHHHHHhccCCCcEEEEEE
Q psy7830         197 GHAE------GGPYDVIFFGAGTT---EVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       197 ~~~~------~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ....      .++||+|+++....   .+++.+.++|||||+|++.-
T Consensus       124 ~l~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~  170 (242)
T 3r3h_A          124 TLHSLLNEGGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDN  170 (242)
T ss_dssp             HHHHHHHHHCSSCEEEEEEESCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHHhhccCCCCEeEEEEcCChHHhHHHHHHHHHhcCCCeEEEEEC
Confidence            4332      36899999987754   35788999999999999853

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.40  E-value=9.4e-13  Score=122.04  Aligned_cols=103  Identities=12%  Similarity=0.121  Sum_probs=84.0

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHh---cCCCCCCCCCEEEEEcCCCCCC------
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKI---SRPDLLQSKTLEFILKDARWGH------  198 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~---~~~~~l~~~~v~~~~~D~~~~~------  198 (364)
                      ..++.+|||+|||+|.++..++..    +|+++|+++.+++.|++|+..   +.   + .++++++.+|+.+..      
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~---l-~~~v~~~~~D~~~~~~~~~~~  109 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAA---F-SARIEVLEADVTLRAKARVEA  109 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTT---T-GGGEEEEECCTTCCHHHHHHT
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCC---C-cceEEEEeCCHHHHhhhhhhh
Confidence            567889999999999999998876    899999999999999999865   33   2 136999999998762      


Q ss_pred             -CCCCCeeEEEEccCh------------------------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         199 -AEGGPYDVIFFGAGT------------------------TEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       199 -~~~~~fD~Ii~~~~~------------------------~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                       ...++||+|++|.++                        ..+++.+.++|||||++++......
T Consensus       110 ~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  174 (260)
T 2ozv_A          110 GLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQS  174 (260)
T ss_dssp             TCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGG
T ss_pred             ccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHH
Confidence             234689999998443                        3457788999999999999876653

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.40  E-value=6.2e-14  Score=127.65  Aligned_cols=108  Identities=15%  Similarity=0.081  Sum_probs=86.5

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCC-CCEEEEEcCCCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQS-KTLEFILKDARW  196 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~-~~v~~~~~D~~~  196 (364)
                      +...++..+.. ..++.+|||+|||+|.++..+++.  +|+|+|+++.+++.|++++..     .+. ++++++++|+..
T Consensus        65 ~~~~l~~~~~~-~~~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~~~~d~~~  138 (241)
T 3gdh_A           65 IAEHIAGRVSQ-SFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEV-----YGIADKIEFICGDFLL  138 (241)
T ss_dssp             HHHHHHHHHHH-HSCCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----TTCGGGEEEEESCHHH
T ss_pred             HHHHHHHHhhh-ccCCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHH-----cCCCcCeEEEECChHH
Confidence            34555555542 347899999999999999999988  999999999999999999987     223 489999999987


Q ss_pred             CCCCCCCeeEEEEccChHHH------HHHHHhccCCCcEEEEEE
Q psy7830         197 GHAEGGPYDVIFFGAGTTEV------SKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       197 ~~~~~~~fD~Ii~~~~~~~l------~~~l~~~LkpGG~Lvi~~  234 (364)
                      ... .++||+|+++.++++.      +.++.++|+|||.+++..
T Consensus       139 ~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          139 LAS-FLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             HGG-GCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred             hcc-cCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHHH
Confidence            653 4789999999887652      235778899999877654

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.40  E-value=9e-13  Score=119.53  Aligned_cols=95  Identities=18%  Similarity=0.168  Sum_probs=80.2

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC----CCCCCCC
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW----GHAEGGP  203 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~----~~~~~~~  203 (364)
                      +.++.+|||+|||+|.++..+++.    +|+++|+++.+++.+++++..       .+++.++.+|+..    .... ++
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~-------~~~v~~~~~d~~~~~~~~~~~-~~  143 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE-------RENIIPILGDANKPQEYANIV-EK  143 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT-------CTTEEEEECCTTCGGGGTTTS-CC
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc-------CCCeEEEECCCCCcccccccC-cc
Confidence            467899999999999999988865    899999999999999998765       2589999999986    4443 68


Q ss_pred             eeEEEEccCh----HHHHHHHHhccCCCcEEEEEE
Q psy7830         204 YDVIFFGAGT----TEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       204 fD~Ii~~~~~----~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ||+|+.+...    ..+++++.+.|||||++++.+
T Consensus       144 ~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  178 (230)
T 1fbn_A          144 VDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEEecCChhHHHHHHHHHHHhCCCCcEEEEEE
Confidence            9999976443    346889999999999999974

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.40  E-value=1.2e-12  Score=117.25  Aligned_cols=111  Identities=14%  Similarity=0.072  Sum_probs=82.6

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG  197 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~  197 (364)
                      ...++.+.  +.++.+|||+|||+|.++..+++.    +|+|+|+++.|++.+.+++.++.. ..+.++++++++|+...
T Consensus        17 ~~~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~-~~~~~~v~~~~~d~~~l   93 (218)
T 3mq2_A           17 DAEFEQLR--SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPA-KGGLPNLLYLWATAERL   93 (218)
T ss_dssp             HHHHHHHH--TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGG-GTCCTTEEEEECCSTTC
T ss_pred             HHHHHHhh--ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhh-hcCCCceEEEecchhhC
Confidence            44566666  678999999999999999999876    999999999988865443322000 02346899999999887


Q ss_pred             CCCCCCeeEEEEccCh-----------HHHHHHHHhccCCCcEEEEEEcC
Q psy7830         198 HAEGGPYDVIFFGAGT-----------TEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       198 ~~~~~~fD~Ii~~~~~-----------~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +...+. |.|++....           ..+++++.++|||||+++++...
T Consensus        94 ~~~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  142 (218)
T 3mq2_A           94 PPLSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNL  142 (218)
T ss_dssp             CSCCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEG
T ss_pred             CCCCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEecc
Confidence            665455 777644321           34678999999999999997654

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.39  E-value=1.1e-12  Score=115.65  Aligned_cols=99  Identities=15%  Similarity=0.127  Sum_probs=78.4

Q ss_pred             HHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCC-CEEEEEcCCCCCCC
Q psy7830         125 LEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSK-TLEFILKDARWGHA  199 (364)
Q Consensus       125 l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~-~v~~~~~D~~~~~~  199 (364)
                      ...+..++.+.++|||+|||+|.++..++..    +|+++|+|+.|++.+++|+..     .+.. ++++  .|..... 
T Consensus        40 Y~~~~~~l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~-----~g~~~~v~~--~d~~~~~-  111 (200)
T 3fzg_A           40 YTYVFGNIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGK-----LKTTIKYRF--LNKESDV-  111 (200)
T ss_dssp             HHHHHHHSCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHH-----SCCSSEEEE--ECCHHHH-
T ss_pred             HHHHHhhcCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh-----cCCCccEEE--ecccccC-
Confidence            3333334677889999999999999999665    999999999999999999988     3334 5666  5554433 


Q ss_pred             CCCCeeEEEEccChHHHH------HHHHhccCCCcEEE
Q psy7830         200 EGGPYDVIFFGAGTTEVS------KTILSQLKPNGRIV  231 (364)
Q Consensus       200 ~~~~fD~Ii~~~~~~~l~------~~l~~~LkpGG~Lv  231 (364)
                      ..++||+|++...++.+.      ..+.+.|+|||.+|
T Consensus       112 ~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfI  149 (200)
T 3fzg_A          112 YKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVI  149 (200)
T ss_dssp             TTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEE
T ss_pred             CCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEE
Confidence            347899999999998862      37899999998766

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.39  E-value=1.5e-12  Score=122.02  Aligned_cols=115  Identities=12%  Similarity=0.078  Sum_probs=80.7

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCC------------CCCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPD------------LLQS  184 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~------------~l~~  184 (364)
                      ....+.+.+.....++.+|||||||+|..+..++..   +|+|+|+|+.|++.|++++......            ..+.
T Consensus        57 ~~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~  136 (289)
T 2g72_A           57 KLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGK  136 (289)
T ss_dssp             HHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCc
Confidence            345566666532347889999999999965544442   9999999999999999876431000            0000


Q ss_pred             -------------CCEEEEEcCCCC-CCC-----CCCCeeEEEEccChHH----------HHHHHHhccCCCcEEEEEE
Q psy7830         185 -------------KTLEFILKDARW-GHA-----EGGPYDVIFFGAGTTE----------VSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       185 -------------~~v~~~~~D~~~-~~~-----~~~~fD~Ii~~~~~~~----------l~~~l~~~LkpGG~Lvi~~  234 (364)
                                   ..++++.+|+.. .+.     ..++||+|+++..+++          +++++.++|||||+|++..
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~  215 (289)
T 2g72_A          137 GECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG  215 (289)
T ss_dssp             CCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                         015677789876 332     2356999999988876          3568999999999999964

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.39  E-value=7.5e-13  Score=120.25  Aligned_cols=98  Identities=13%  Similarity=-0.008  Sum_probs=77.5

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCC-HHHHHHH---HHHHHhcCCCCCCCCCEEEEEcCCCCCCCC-CC
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLL-PETLNNS---LKNIKISRPDLLQSKTLEFILKDARWGHAE-GG  202 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis-~~~l~~a---~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~-~~  202 (364)
                      .+++.+|||||||+|.++..+++.    +|+|+|+| +.|++.|   ++++..     .+.+++++..+|+...+.. .+
T Consensus        22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~-----~~~~~v~~~~~d~~~l~~~~~d   96 (225)
T 3p2e_A           22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSK-----GGLSNVVFVIAAAESLPFELKN   96 (225)
T ss_dssp             TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGG-----TCCSSEEEECCBTTBCCGGGTT
T ss_pred             CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHH-----cCCCCeEEEEcCHHHhhhhccC
Confidence            378899999999999999999843    89999999 7777776   666655     2346899999999877432 25


Q ss_pred             CeeEEEEccChH-----------HHHHHHHhccCCCcEEEEEE
Q psy7830         203 PYDVIFFGAGTT-----------EVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       203 ~fD~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      .+|.|+++.+..           .++.++.++|||||++++..
T Consensus        97 ~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~  139 (225)
T 3p2e_A           97 IADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT  139 (225)
T ss_dssp             CEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred             eEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence            688888776532           35788999999999999844

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.39  E-value=2.2e-12  Score=119.40  Aligned_cols=111  Identities=13%  Similarity=0.129  Sum_probs=85.4

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHH------HHHHHHHHHHhcCCCCCCCCCEE
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPE------TLNNSLKNIKISRPDLLQSKTLE  188 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~------~l~~a~~~~~~~~~~~l~~~~v~  188 (364)
                      ....+++.+.  ++++.+|||||||+|.++..+++.     +|+++|+|+.      +++.+++++....   + .++++
T Consensus        31 ~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~---~-~~~v~  104 (275)
T 3bkx_A           31 HRLAIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP---L-GDRLT  104 (275)
T ss_dssp             HHHHHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTST---T-GGGEE
T ss_pred             HHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcC---C-CCceE
Confidence            3455566665  678999999999999999988864     8999999997      9999999987621   1 14799


Q ss_pred             EEEcC---CCCCCCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830         189 FILKD---ARWGHAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       189 ~~~~D---~~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +..+|   ....+..+++||+|+++..+++      +.+.+..+++|||++++....
T Consensus       105 ~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~  161 (275)
T 3bkx_A          105 VHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWS  161 (275)
T ss_dssp             EECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEEC
T ss_pred             EEECChhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence            99998   3333334578999999888754      456666777779999987654

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.39  E-value=1.3e-12  Score=120.85  Aligned_cols=105  Identities=18%  Similarity=0.237  Sum_probs=85.3

Q ss_pred             HHHHHHHhccC-CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         122 ARCLEQLVDHL-QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       122 a~~l~~L~~~l-~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      ..+.+.+...+ .++.+|||+|||+|.++..+++.    +|+++|+++.+++.++++.          .++.+..+|+..
T Consensus        72 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~----------~~~~~~~~d~~~  141 (269)
T 1p91_A           72 DAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----------PQVTFCVASSHR  141 (269)
T ss_dssp             HHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----------TTSEEEECCTTS
T ss_pred             HHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC----------CCcEEEEcchhh
Confidence            33444444333 67899999999999999988875    8999999999999998864          368899999887


Q ss_pred             CCCCCCCeeEEEEccChHHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         197 GHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       197 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      .+..+++||+|+++.. ...+.++.++|||||++++.....
T Consensus       142 ~~~~~~~fD~v~~~~~-~~~l~~~~~~L~pgG~l~~~~~~~  181 (269)
T 1p91_A          142 LPFSDTSMDAIIRIYA-PCKAEELARVVKPGGWVITATPGP  181 (269)
T ss_dssp             CSBCTTCEEEEEEESC-CCCHHHHHHHEEEEEEEEEEEECT
T ss_pred             CCCCCCceeEEEEeCC-hhhHHHHHHhcCCCcEEEEEEcCH
Confidence            7665678999998765 345789999999999999988664

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.39  E-value=1.3e-12  Score=123.83  Aligned_cols=102  Identities=13%  Similarity=0.068  Sum_probs=76.4

Q ss_pred             CCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCC----CCCEEEEEcCCCCC--------C
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQ----SKTLEFILKDARWG--------H  198 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~----~~~v~~~~~D~~~~--------~  198 (364)
                      ++.+|||||||+|..+..++..   +|+|+|+|+.|++.|+++.....   ..    .-++++.+.|+...        .
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~---~~~~~~~~~~~f~~~d~~~d~~~~~l~~~  124 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLN---SGIKTKYYKFDYIQETIRSDTFVSSVREV  124 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHC---C----CCCEEEEEECCTTSSSHHHHHHTT
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhcc---ccccccccccchhhhhcccchhhhhhhcc
Confidence            5789999999999766544443   89999999999999999876521   00    01367888887321        1


Q ss_pred             CCCCCeeEEEEccChH---------HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         199 AEGGPYDVIFFGAGTT---------EVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       199 ~~~~~fD~Ii~~~~~~---------~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      ..+++||+|++...++         .+++++.++|||||++++++.+..
T Consensus       125 ~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~  173 (302)
T 2vdw_A          125 FYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGD  173 (302)
T ss_dssp             CCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred             ccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHH
Confidence            2346899999876653         367899999999999999987654

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.38  E-value=1e-12  Score=117.32  Aligned_cols=105  Identities=21%  Similarity=0.211  Sum_probs=84.0

Q ss_pred             HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC-
Q psy7830         121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG-  197 (364)
Q Consensus       121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~-  197 (364)
                      ...+++.+.  ..++.+|||+|||+|.++..+++.  +|+++|+++.+++.++++           .++.+..+|+... 
T Consensus        41 ~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----------~~~~~~~~~~~~~~  107 (227)
T 3e8s_A           41 DQAILLAIL--GRQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA-----------GAGEVHLASYAQLA  107 (227)
T ss_dssp             HHHHHHHHH--HTCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT-----------CSSCEEECCHHHHH
T ss_pred             cHHHHHHhh--cCCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh-----------cccccchhhHHhhc
Confidence            345566665  456799999999999999999988  999999999999999886           1556777776554 


Q ss_pred             --CC-CCCCeeEEEEccChH-----HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         198 --HA-EGGPYDVIFFGAGTT-----EVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       198 --~~-~~~~fD~Ii~~~~~~-----~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                        +. ...+||+|+++..++     .+++++.+.|||||++++......
T Consensus       108 ~~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  156 (227)
T 3e8s_A          108 EAKVPVGKDYDLICANFALLHQDIIELLSAMRTLLVPGGALVIQTLHPW  156 (227)
T ss_dssp             TTCSCCCCCEEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             ccccccCCCccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEecCcc
Confidence              22 234699999987664     578999999999999999887643

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.38  E-value=8.4e-13  Score=121.57  Aligned_cols=108  Identities=23%  Similarity=0.258  Sum_probs=84.8

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      ..++..+.. ..++.+|||+|||+|+.+..+++.     +|+++|+++.+++.|++++....   + .++++++.+|+.+
T Consensus        68 ~~ll~~l~~-~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g---~-~~~i~~~~gda~~  142 (247)
T 1sui_A           68 GQFLSMLLK-LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG---V-DHKIDFREGPALP  142 (247)
T ss_dssp             HHHHHHHHH-HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT---C-GGGEEEEESCHHH
T ss_pred             HHHHHHHHH-hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---C-CCCeEEEECCHHH
Confidence            444444442 456789999999999999998874     89999999999999999998722   1 2479999999865


Q ss_pred             CCC-------CCCCeeEEEEccCh---HHHHHHHHhccCCCcEEEEEE
Q psy7830         197 GHA-------EGGPYDVIFFGAGT---TEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       197 ~~~-------~~~~fD~Ii~~~~~---~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ...       ..++||+|+++...   ..+++.+.++|||||+|++.-
T Consensus       143 ~l~~l~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          143 VLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             HHHHHHHSGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             HHHHHHhccCCCCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEec
Confidence            422       14689999998754   357789999999999998753

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.38  E-value=2.7e-12  Score=111.12  Aligned_cols=105  Identities=16%  Similarity=0.129  Sum_probs=82.9

Q ss_pred             ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC
Q psy7830         116 EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA  194 (364)
Q Consensus       116 s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~  194 (364)
                      ++|. +..+++.+.....++.+|||+|||+|.++..+++. +|+|+|+|+.+++.      .        .+++++++|+
T Consensus         6 P~~~-~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~~v~gvD~s~~~~~~------~--------~~~~~~~~d~   70 (170)
T 3q87_B            6 PGED-TYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRNTVVSTDLNIRALES------H--------RGGNLVRADL   70 (170)
T ss_dssp             CCHH-HHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTSEEEEEESCHHHHHT------C--------SSSCEEECST
T ss_pred             cCcc-HHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcCcEEEEECCHHHHhc------c--------cCCeEEECCh
Confidence            3443 35666666532267889999999999999999998 99999999999987      2        3788999999


Q ss_pred             CCCCCCCCCeeEEEEccChH---------------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         195 RWGHAEGGPYDVIFFGAGTT---------------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       195 ~~~~~~~~~fD~Ii~~~~~~---------------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ..... +++||+|++|.++.               .++..+.+.+ |||++++.....
T Consensus        71 ~~~~~-~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~  126 (170)
T 3q87_B           71 LCSIN-QESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA  126 (170)
T ss_dssp             TTTBC-GGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG
T ss_pred             hhhcc-cCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC
Confidence            87433 47899999998764               4667888888 999999977543

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.37  E-value=2.8e-12  Score=123.56  Aligned_cols=95  Identities=19%  Similarity=0.167  Sum_probs=79.8

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      +.++.+|||+|||+|.++..+++.   +|+|+|+++ +++.|+++++.+.   + .++++++.+|+.+...+.++||+|+
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~---~-~~~i~~~~~d~~~~~~~~~~~D~Iv  136 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNK---L-EDTITLIKGKIEEVHLPVEKVDVII  136 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTT---C-TTTEEEEESCTTTSCCSCSCEEEEE
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcC---C-CCcEEEEEeeHHHhcCCCCcEEEEE
Confidence            468899999999999999999887   899999997 9999999988732   2 1589999999988765557899999


Q ss_pred             EccC---h------HHHHHHHHhccCCCcEEE
Q psy7830         209 FGAG---T------TEVSKTILSQLKPNGRIV  231 (364)
Q Consensus       209 ~~~~---~------~~l~~~l~~~LkpGG~Lv  231 (364)
                      ++..   +      ..++..+.+.|||||+++
T Consensus       137 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          137 SEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             ECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             EcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            8762   2      346778889999999997

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.37  E-value=2.1e-12  Score=118.51  Aligned_cols=103  Identities=18%  Similarity=0.191  Sum_probs=80.8

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCC-------------C------------C
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLL-------------Q------------S  184 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l-------------~------------~  184 (364)
                      .++.+|||+|||+|.++..++..   +|+++|+++.+++.+++++..... ..             +            .
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  133 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPG-AFDWSPVVTYVCDLEGNRMKGPEKEEKLR  133 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTT-CCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCc-cccchhhhhhhhcccccccchHHHHHHhh
Confidence            56789999999999999888876   899999999999999998755110 00             0            0


Q ss_pred             CCE-EEEEcCCCCCCC-CC---CCeeEEEEccChH----H------HHHHHHhccCCCcEEEEEEcC
Q psy7830         185 KTL-EFILKDARWGHA-EG---GPYDVIFFGAGTT----E------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       185 ~~v-~~~~~D~~~~~~-~~---~~fD~Ii~~~~~~----~------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      .++ .+..+|+....+ ..   ++||+|+++..++    +      ++.++.++|||||+|++....
T Consensus       134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  200 (265)
T 2i62_A          134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDAL  200 (265)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecC
Confidence            027 899999987543 33   6899999988876    2      467899999999999998743

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.37  E-value=2.5e-12  Score=114.70  Aligned_cols=107  Identities=16%  Similarity=0.132  Sum_probs=83.2

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      ..++..+.. ..++.+|||+|||+|+.+..+++.     +|+++|+++.+++.|++++....   + .++++++.+|+.+
T Consensus        45 ~~~l~~l~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~-~~~v~~~~~d~~~  119 (210)
T 3c3p_A           45 GRLLYLLAR-IKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNG---L-IDRVELQVGDPLG  119 (210)
T ss_dssp             HHHHHHHHH-HHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHS---G-GGGEEEEESCHHH
T ss_pred             HHHHHHHHH-hhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC---C-CceEEEEEecHHH
Confidence            444444432 346789999999999999999875     89999999999999999988722   1 1369999999865


Q ss_pred             C-CCCCCCeeEEEEccCh---HHHHHHHHhccCCCcEEEEEE
Q psy7830         197 G-HAEGGPYDVIFFGAGT---TEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       197 ~-~~~~~~fD~Ii~~~~~---~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      . ....+ ||+|+++...   ..+++.+.++|||||++++..
T Consensus       120 ~~~~~~~-fD~v~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  160 (210)
T 3c3p_A          120 IAAGQRD-IDILFMDCDVFNGADVLERMNRCLAKNALLIAVN  160 (210)
T ss_dssp             HHTTCCS-EEEEEEETTTSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred             HhccCCC-CCEEEEcCChhhhHHHHHHHHHhcCCCeEEEEEC
Confidence            4 22235 9999997643   457889999999999998743

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.37  E-value=1.6e-12  Score=117.21  Aligned_cols=110  Identities=21%  Similarity=0.165  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHhcc-CCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830         119 SYIARCLEQLVDH-LQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK  192 (364)
Q Consensus       119 ~~~a~~l~~L~~~-l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~  192 (364)
                      ...+.++..+... +.++.+|||+|||+|.++..+++.     +|+++|+++.+++.+++++..       .++++++.+
T Consensus        57 ~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~-------~~~v~~~~~  129 (227)
T 1g8a_A           57 KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-------RRNIVPILG  129 (227)
T ss_dssp             HHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-------CTTEEEEEC
T ss_pred             hHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc-------cCCCEEEEc
Confidence            3445553333211 468899999999999999988854     899999999999999998865       258999999


Q ss_pred             CCCCCC---CCCCCeeEEEEccChH----HHHHHHHhccCCCcEEEEEEc
Q psy7830         193 DARWGH---AEGGPYDVIFFGAGTT----EVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       193 D~~~~~---~~~~~fD~Ii~~~~~~----~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      |+....   ...++||+|+++.+..    .++.++.+.|||||++++.+.
T Consensus       130 d~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  179 (227)
T 1g8a_A          130 DATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVK  179 (227)
T ss_dssp             CTTCGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCCcchhhcccCCceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            987632   1135799999987643    347889999999999998753

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.36  E-value=2.2e-12  Score=116.96  Aligned_cols=98  Identities=17%  Similarity=0.189  Sum_probs=80.8

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC---CCCCCC
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG---HAEGGP  203 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~---~~~~~~  203 (364)
                      +.++.+|||+|||+|.++..+++.     +|+++|+++.+++.+.+++..+       .+++++.+|+...   ....++
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-------~~v~~~~~d~~~~~~~~~~~~~  147 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-------TNIIPVIEDARHPHKYRMLIAM  147 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-------TTEEEECSCTTCGGGGGGGCCC
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-------CCeEEEEcccCChhhhcccCCc
Confidence            568899999999999999988864     8999999999999888887662       4899999999763   223468


Q ss_pred             eeEEEEccChH----HHHHHHHhccCCCcEEEEEEcC
Q psy7830         204 YDVIFFGAGTT----EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       204 fD~Ii~~~~~~----~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ||+|+++.+..    .++.++.+.|||||++++++..
T Consensus       148 ~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~~~~  184 (233)
T 2ipx_A          148 VDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIKA  184 (233)
T ss_dssp             EEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             EEEEEEcCCCccHHHHHHHHHHHHcCCCeEEEEEEcc
Confidence            99999987643    2467899999999999997654

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.36  E-value=1.8e-12  Score=116.80  Aligned_cols=99  Identities=22%  Similarity=0.250  Sum_probs=81.0

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC----C-
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE----G-  201 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~----~-  201 (364)
                      ..++.+|||+|||+|+.+..+++.     +|+++|+++.+++.|++++....   + .++++++.+|+.+....    . 
T Consensus        67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g---~-~~~i~~~~~d~~~~~~~~~~~~~  142 (229)
T 2avd_A           67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE---A-EHKIDLRLKPALETLDELLAAGE  142 (229)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT---C-TTTEEEEESCHHHHHHHHHHTTC
T ss_pred             hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC---C-CCeEEEEEcCHHHHHHHHHhcCC
Confidence            467889999999999999999874     89999999999999999988722   1 25899999998643211    1 


Q ss_pred             -CCeeEEEEccChH---HHHHHHHhccCCCcEEEEEE
Q psy7830         202 -GPYDVIFFGAGTT---EVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       202 -~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~~  234 (364)
                       ++||+|+++....   .+++.+.++|+|||++++..
T Consensus       143 ~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~  179 (229)
T 2avd_A          143 AGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLR  179 (229)
T ss_dssp             TTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence             6899999987643   57889999999999999843

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.35  E-value=3.2e-12  Score=117.29  Aligned_cols=113  Identities=19%  Similarity=0.218  Sum_probs=81.9

Q ss_pred             HHHHHHHHHhccC--CCCCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCC-C----
Q psy7830         120 YIARCLEQLVDHL--QNGSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSK-T----  186 (364)
Q Consensus       120 ~~a~~l~~L~~~l--~~g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~-~----  186 (364)
                      +...+++.+.+.+  .++.+|||+|||+|.++..++..      +|+|+|+|+.+++.|++++.....  .+.. +    
T Consensus        35 la~~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~--~~~~~~~~~~  112 (250)
T 1o9g_A           35 LATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSP--AGLTARELER  112 (250)
T ss_dssp             HHHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhh--ccccccchhh
Confidence            3344555544333  25679999999999999888742      899999999999999998765200  0111 1    


Q ss_pred             ---------------------EE-------------EEEcCCCCCCC-----CCCCeeEEEEccChH-------------
Q psy7830         187 ---------------------LE-------------FILKDARWGHA-----EGGPYDVIFFGAGTT-------------  214 (364)
Q Consensus       187 ---------------------v~-------------~~~~D~~~~~~-----~~~~fD~Ii~~~~~~-------------  214 (364)
                                           ++             +.++|+.....     ...+||+|++|.++.             
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~  192 (250)
T 1o9g_A          113 REQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQP  192 (250)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHH
T ss_pred             hhhhhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccH
Confidence                                 56             99999877542     334899999986542             


Q ss_pred             --HHHHHHHhccCCCcEEEEEE
Q psy7830         215 --EVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       215 --~l~~~l~~~LkpGG~Lvi~~  234 (364)
                        .+++.+.++|||||++++..
T Consensus       193 ~~~~l~~~~~~LkpgG~l~~~~  214 (250)
T 1o9g_A          193 VAGLLRSLASALPAHAVIAVTD  214 (250)
T ss_dssp             HHHHHHHHHHHSCTTCEEEEEE
T ss_pred             HHHHHHHHHHhcCCCcEEEEeC
Confidence              56788999999999999943

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.34  E-value=3.3e-12  Score=116.64  Aligned_cols=108  Identities=18%  Similarity=0.248  Sum_probs=84.9

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      ..++..+.. ..++.+|||+|||+|+.+..+++.     +|+++|+++.+++.|+++++...   + .++++++.+|+.+
T Consensus        59 ~~~l~~l~~-~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g---~-~~~i~~~~gda~~  133 (237)
T 3c3y_A           59 GQLMSFVLK-LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAG---V-EHKINFIESDAML  133 (237)
T ss_dssp             HHHHHHHHH-HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT---C-GGGEEEEESCHHH
T ss_pred             HHHHHHHHH-hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---C-CCcEEEEEcCHHH
Confidence            444555442 456789999999999999998864     99999999999999999998722   1 2379999999865


Q ss_pred             CCC-------CCCCeeEEEEccChH---HHHHHHHhccCCCcEEEEEE
Q psy7830         197 GHA-------EGGPYDVIFFGAGTT---EVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       197 ~~~-------~~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ...       ..++||+|+++....   .+++.+.++|+|||++++..
T Consensus       134 ~l~~l~~~~~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          134 ALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             HHHHHHHSTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHHHhccCCCCCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEec
Confidence            321       136899999987653   56788999999999998754

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.34  E-value=4.6e-12  Score=122.49  Aligned_cols=98  Identities=19%  Similarity=0.155  Sum_probs=81.0

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      +.++.+|||+|||+|.++..+++.   +|+|+|+++ +++.|++++..+.   + .++++++.+|+.+...+.++||+|+
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~---~-~~~v~~~~~d~~~~~~~~~~fD~Ii  138 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANK---L-DHVVTIIKGKVEEVELPVEKVDIII  138 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTT---C-TTTEEEEESCTTTCCCSSSCEEEEE
T ss_pred             cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcC---C-CCcEEEEECcHHHccCCCCceEEEE
Confidence            457899999999999999999987   999999995 9999999988732   2 1359999999998766567999999


Q ss_pred             EccC---------hHHHHHHHHhccCCCcEEEEEE
Q psy7830         209 FGAG---------TTEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       209 ~~~~---------~~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ++..         ...++..+.++|||||+++...
T Consensus       139 s~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  173 (349)
T 3q7e_A          139 SEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDR  173 (349)
T ss_dssp             ECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred             EccccccccCchhHHHHHHHHHHhCCCCCEEcccc
Confidence            8653         2346788899999999998433

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.33  E-value=4.5e-12  Score=119.81  Aligned_cols=96  Identities=15%  Similarity=0.101  Sum_probs=82.9

Q ss_pred             ccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830         114 VMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL  191 (364)
Q Consensus       114 ~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~  191 (364)
                      .+..|.++.++++.+.  +.++++|||||||+|+++..+++.  +|+++|+|+.+++.+++++..       .++++++.
T Consensus        32 fL~d~~i~~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~-------~~~v~vi~  102 (295)
T 3gru_A           32 FLIDKNFVNKAVESAN--LTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKEL-------YNNIEIIW  102 (295)
T ss_dssp             EECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHH-------CSSEEEEE
T ss_pred             ccCCHHHHHHHHHhcC--CCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhcc-------CCCeEEEE
Confidence            5677889999999987  788999999999999999999987  999999999999999999864       25899999


Q ss_pred             cCCCCCCCCCCCeeEEEEccChHHHHH
Q psy7830         192 KDARWGHAEGGPYDVIFFGAGTTEVSK  218 (364)
Q Consensus       192 ~D~~~~~~~~~~fD~Ii~~~~~~~l~~  218 (364)
                      +|+........+||+|++|.++....+
T Consensus       103 gD~l~~~~~~~~fD~Iv~NlPy~is~p  129 (295)
T 3gru_A          103 GDALKVDLNKLDFNKVVANLPYQISSP  129 (295)
T ss_dssp             SCTTTSCGGGSCCSEEEEECCGGGHHH
T ss_pred             CchhhCCcccCCccEEEEeCcccccHH
Confidence            999886655567999999998764333

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.33  E-value=1.7e-12  Score=119.22  Aligned_cols=76  Identities=16%  Similarity=0.090  Sum_probs=60.8

Q ss_pred             CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC---CCC---CCC
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG---HAE---GGP  203 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~---~~~---~~~  203 (364)
                      ++.+|||+|||+|.++..++..    +|+++|+++.+++.|++|+..+.   + ..+++++.+|+.+.   ...   +++
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~-~~~v~~~~~d~~~~~~~~~~~~~~~~  140 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNN---L-SDLIKVVKVPQKTLLMDALKEESEII  140 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT---C-TTTEEEEECCTTCSSTTTSTTCCSCC
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcC---C-CccEEEEEcchhhhhhhhhhcccCCc
Confidence            5789999999999999888765    89999999999999999998732   1 13599999997652   122   257


Q ss_pred             eeEEEEccCh
Q psy7830         204 YDVIFFGAGT  213 (364)
Q Consensus       204 fD~Ii~~~~~  213 (364)
                      ||+|++|.++
T Consensus       141 fD~i~~npp~  150 (254)
T 2h00_A          141 YDFCMCNPPF  150 (254)
T ss_dssp             BSEEEECCCC
T ss_pred             ccEEEECCCC
Confidence            9999998554

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.33  E-value=4.3e-12  Score=118.71  Aligned_cols=102  Identities=22%  Similarity=0.222  Sum_probs=84.0

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHh-c-CCCCCCCCCEEEEEcCCCCCCC-CCCCee
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKI-S-RPDLLQSKTLEFILKDARWGHA-EGGPYD  205 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~-~-~~~~l~~~~v~~~~~D~~~~~~-~~~~fD  205 (364)
                      ..+.+|||+|||+|.++..+++.    +|+++|+|+.+++.|++++.. + .   +..++++++.+|+..... ..++||
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~---~~~~rv~v~~~D~~~~l~~~~~~fD  150 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGK---LDDPRVDVQVDDGFMHIAKSENQYD  150 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTT---TTSTTEEEEESCSHHHHHTCCSCEE
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccc---cCCCceEEEECcHHHHHhhCCCCee
Confidence            45689999999999999999876    899999999999999998854 1 1   334689999999876432 246899


Q ss_pred             EEEEccCh----------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         206 VIFFGAGT----------TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       206 ~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +|+++...          ..+.+.+.+.|+|||++++...+.
T Consensus       151 ~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~  192 (275)
T 1iy9_A          151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNP  192 (275)
T ss_dssp             EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             EEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCc
Confidence            99998754          467899999999999999987654

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.33  E-value=5.3e-12  Score=124.00  Aligned_cols=105  Identities=17%  Similarity=0.118  Sum_probs=83.7

Q ss_pred             HhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC-CCCe
Q psy7830         128 LVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE-GGPY  204 (364)
Q Consensus       128 L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~-~~~f  204 (364)
                      +....++|.+|||+|||+|.+++.++..  .|+++|+|+.+++.|++|++.+.   +  . .++.++|+.+.... .+.|
T Consensus       208 l~~~~~~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng---~--~-~~~~~~D~~~~l~~~~~~f  281 (393)
T 4dmg_A          208 FEAMVRPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLG---L--R-VDIRHGEALPTLRGLEGPF  281 (393)
T ss_dssp             HHTTCCTTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT---C--C-CEEEESCHHHHHHTCCCCE
T ss_pred             HHHHhcCCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhC---C--C-CcEEEccHHHHHHHhcCCC
Confidence            3333567999999999999999999987  99999999999999999998844   2  2 35668998764321 2349


Q ss_pred             eEEEEccCh---------------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         205 DVIFFGAGT---------------TEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       205 D~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      |+|+++.+.               ..++..+.++|||||+|++......
T Consensus       282 D~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~  330 (393)
T 4dmg_A          282 HHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH  330 (393)
T ss_dssp             EEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             CEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            999999875               3467888999999999997776544

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.32  E-value=3.2e-12  Score=116.27  Aligned_cols=108  Identities=22%  Similarity=0.230  Sum_probs=83.6

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      ..++..+.. ..++.+|||+|||+|+.+..+++.     +|+++|+++.+++.|++++....   + .++++++.+|+.+
T Consensus        61 ~~~l~~l~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g---~-~~~i~~~~~d~~~  135 (232)
T 3cbg_A           61 AQFLGLLIS-LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAG---V-AEKISLRLGPALA  135 (232)
T ss_dssp             HHHHHHHHH-HHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT---C-GGGEEEEESCHHH
T ss_pred             HHHHHHHHH-hcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---C-CCcEEEEEcCHHH
Confidence            344444332 456789999999999999999875     89999999999999999987722   1 1469999999754


Q ss_pred             CC----CCC--CCeeEEEEccCh---HHHHHHHHhccCCCcEEEEEE
Q psy7830         197 GH----AEG--GPYDVIFFGAGT---TEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       197 ~~----~~~--~~fD~Ii~~~~~---~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ..    ..+  ++||+|+++...   ..+++.+.++|+|||+|++..
T Consensus       136 ~l~~l~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~  182 (232)
T 3cbg_A          136 TLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDN  182 (232)
T ss_dssp             HHHHHHTSSSCCCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred             HHHHHHhcCCCCCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            21    112  689999998764   356789999999999999854

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.32  E-value=1.7e-11  Score=119.55  Aligned_cols=117  Identities=15%  Similarity=0.033  Sum_probs=91.3

Q ss_pred             CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE
Q psy7830         112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL  187 (364)
Q Consensus       112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v  187 (364)
                      +..+..+.+.+.++...   ..++.+|||+|||+|.+++.++..    +|+|+|+|+.+++.|++|+....   + .+++
T Consensus       198 ~~a~l~~~la~~l~~~~---~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~g---l-~~~i  270 (373)
T 3tm4_A          198 HPAHLKASIANAMIELA---ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAG---V-LDKI  270 (373)
T ss_dssp             CTTCCCHHHHHHHHHHH---TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTT---C-GGGC
T ss_pred             CCCCccHHHHHHHHHhh---cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC---C-CCce
Confidence            34445677777777665   478899999999999999999887    79999999999999999998732   1 1489


Q ss_pred             EEEEcCCCCCCCCCCCeeEEEEccCh--------------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         188 EFILKDARWGHAEGGPYDVIFFGAGT--------------TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       188 ~~~~~D~~~~~~~~~~fD~Ii~~~~~--------------~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ++.++|+...+...++||+|++|.++              ..+.+.+.+.|  ||.+++...+.
T Consensus       271 ~~~~~D~~~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~~  332 (373)
T 3tm4_A          271 KFIQGDATQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTEK  332 (373)
T ss_dssp             EEEECCGGGGGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESCH
T ss_pred             EEEECChhhCCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECCH
Confidence            99999999877656789999998773              23556777777  66666656543

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.31  E-value=2.3e-12  Score=121.08  Aligned_cols=100  Identities=15%  Similarity=0.058  Sum_probs=73.6

Q ss_pred             CCCCEEEEECCCccHHHHHHH----c---c-eE--EEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEE--EcCCCCCC--
Q psy7830         133 QNGSRVLDIGSGQGYMATAKE----W---L-SS--VRQLLLPETLNNSLKNIKISRPDLLQSKTLEFI--LKDARWGH--  198 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la----~---~-~V--~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~--~~D~~~~~--  198 (364)
                      .++.+|||||||+|.++..++    .   . .|  +++|+|+.|++.|++++...    .+..++.+.  .+++....  
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~----~~~~~v~~~~~~~~~~~~~~~  126 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKT----SNLENVKFAWHKETSSEYQSR  126 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTC----SSCTTEEEEEECSCHHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhc----cCCCcceEEEEecchhhhhhh
Confidence            467899999999997765332    1   1 33  99999999999999988651    012456554  44543322  


Q ss_pred             ----CCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830         199 ----AEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       199 ----~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                          ..+++||+|++...+++      .++++.++|||||++++....
T Consensus       127 ~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~  174 (292)
T 2aot_A          127 MLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVS  174 (292)
T ss_dssp             HHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             hccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence                23578999999988875      578999999999999997644

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.31  E-value=4.7e-12  Score=118.64  Aligned_cols=99  Identities=18%  Similarity=0.101  Sum_probs=84.3

Q ss_pred             cCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         131 HLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       131 ~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      .+++|.+|||+|||+|++++.+++.   +|+++|++|.+++.+++|++.|.   +. ++++++.+|+.+... .+.||.|
T Consensus       122 ~~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~---v~-~~v~~~~~D~~~~~~-~~~~D~V  196 (278)
T 3k6r_A          122 VAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNK---VE-DRMSAYNMDNRDFPG-ENIADRI  196 (278)
T ss_dssp             HCCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTT---CT-TTEEEECSCTTTCCC-CSCEEEE
T ss_pred             hcCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcC---CC-CcEEEEeCcHHHhcc-ccCCCEE
Confidence            3689999999999999999998877   89999999999999999999854   32 479999999988765 4689999


Q ss_pred             EEccCh--HHHHHHHHhccCCCcEEEEEE
Q psy7830         208 FFGAGT--TEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       208 i~~~~~--~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      +++.+.  ...++.+.+.||+||.|.+..
T Consensus       197 i~~~p~~~~~~l~~a~~~lk~gG~ih~~~  225 (278)
T 3k6r_A          197 LMGYVVRTHEFIPKALSIAKDGAIIHYHN  225 (278)
T ss_dssp             EECCCSSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             EECCCCcHHHHHHHHHHHcCCCCEEEEEe
Confidence            998764  356778889999999987643

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.31  E-value=8.1e-12  Score=120.10  Aligned_cols=102  Identities=15%  Similarity=0.194  Sum_probs=82.9

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhc--CCCCCCCCCEEEEEcCCCCCCC--CCCCe
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKIS--RPDLLQSKTLEFILKDARWGHA--EGGPY  204 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~--~~~~l~~~~v~~~~~D~~~~~~--~~~~f  204 (364)
                      ..+.+|||||||+|.++..+++.    +|+++|+|+.+++.|++++...  .   +..++++++.+|+.....  ..++|
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~g---l~~~rv~~~~~D~~~~l~~~~~~~f  195 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIG---YEDPRVNLVIGDGVAFLKNAAEGSY  195 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG---GGSTTEEEEESCHHHHHHTSCTTCE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccc---cCCCcEEEEECCHHHHHHhccCCCc
Confidence            46789999999999999999976    8999999999999999998641  1   223589999999875422  24689


Q ss_pred             eEEEEccC----------hHHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         205 DVIFFGAG----------TTEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       205 D~Ii~~~~----------~~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      |+|+++..          ...+++.+.+.|+|||+|++.....
T Consensus       196 DlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~  238 (334)
T 1xj5_A          196 DAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL  238 (334)
T ss_dssp             EEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             cEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCc
Confidence            99999765          2457889999999999999975554

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.31  E-value=3.9e-12  Score=122.56  Aligned_cols=108  Identities=15%  Similarity=0.145  Sum_probs=87.2

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR  195 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~  195 (364)
                      ....+++.+.  ..++.+|||+|||+|.++..+++.    +|+++|+|+.+++.+++++..+.      .+++++.+|+.
T Consensus       184 ~~~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~------~~~~~~~~d~~  255 (343)
T 2pjd_A          184 GSQLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANG------VEGEVFASNVF  255 (343)
T ss_dssp             HHHHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTT------CCCEEEECSTT
T ss_pred             HHHHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC------CCCEEEEcccc
Confidence            3466666664  346779999999999999998876    89999999999999999998732      24677889987


Q ss_pred             CCCCCCCCeeEEEEccChH-----------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         196 WGHAEGGPYDVIFFGAGTT-----------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       196 ~~~~~~~~fD~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ...  .++||+|+++.+++           .++.++.+.|||||.+++.....
T Consensus       256 ~~~--~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  306 (343)
T 2pjd_A          256 SEV--KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF  306 (343)
T ss_dssp             TTC--CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred             ccc--cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence            653  46899999987654           36789999999999999987554

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.31  E-value=4.3e-12  Score=119.97  Aligned_cols=102  Identities=18%  Similarity=0.167  Sum_probs=81.4

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHh--cCCCCCCCCCEEEEEcCCCCCC-CCCCCee
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKI--SRPDLLQSKTLEFILKDARWGH-AEGGPYD  205 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~--~~~~~l~~~~v~~~~~D~~~~~-~~~~~fD  205 (364)
                      ..+.+|||+|||+|.++..+++.    +|+++|+|+.+++.|++++..  +.   ++.++++++.+|+.... ...++||
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~---~~~~~v~~~~~D~~~~l~~~~~~fD  165 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCG---FDDPRAEIVIANGAEYVRKFKNEFD  165 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGG---GGCTTEEEEESCHHHHGGGCSSCEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccc---cCCCceEEEECcHHHHHhhCCCCce
Confidence            45689999999999999999876    899999999999999999754  11   22368999999986532 2246799


Q ss_pred             EEEEccChH-----------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         206 VIFFGAGTT-----------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       206 ~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +|+++...+           .+++.+.+.|||||++++...+.
T Consensus       166 ~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~  208 (296)
T 1inl_A          166 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDP  208 (296)
T ss_dssp             EEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             EEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCc
Confidence            999876433           46789999999999999987653

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.31  E-value=1.3e-11  Score=118.28  Aligned_cols=96  Identities=16%  Similarity=0.109  Sum_probs=79.2

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      ..++.+|||+|||+|.++..+++.   +|+|+|++ .+++.|++++..+.   + .++++++.+|+.+...+.++||+|+
T Consensus        36 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~---~-~~~i~~~~~d~~~~~~~~~~~D~Iv  110 (328)
T 1g6q_1           36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNG---F-SDKITLLRGKLEDVHLPFPKVDIII  110 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTT---C-TTTEEEEESCTTTSCCSSSCEEEEE
T ss_pred             hcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcC---C-CCCEEEEECchhhccCCCCcccEEE
Confidence            467889999999999999999886   89999999 59999999988733   2 2479999999988765557899999


Q ss_pred             EccC---------hHHHHHHHHhccCCCcEEEE
Q psy7830         209 FGAG---------TTEVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       209 ~~~~---------~~~l~~~l~~~LkpGG~Lvi  232 (364)
                      ++..         ...++..+.+.|||||+++.
T Consensus       111 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          111 SEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             ECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             EeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            8743         23466788899999999973

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.31  E-value=6.5e-12  Score=121.33  Aligned_cols=107  Identities=17%  Similarity=0.138  Sum_probs=83.4

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH  198 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~  198 (364)
                      ..+++.+.  ..++.+|||+|||+|.++..+++.   +|+++|+++ +++.|+++++.+.   + .++++++.+|+.+..
T Consensus        40 ~~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~---l-~~~v~~~~~d~~~~~  112 (348)
T 2y1w_A           40 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNN---L-TDRIVVIPGKVEEVS  112 (348)
T ss_dssp             HHHHHTGG--GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTT---C-TTTEEEEESCTTTCC
T ss_pred             HHHHhccc--cCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcC---C-CCcEEEEEcchhhCC
Confidence            33444443  468899999999999999999877   899999996 8899999887732   2 158999999998765


Q ss_pred             CCCCCeeEEEEccChH--------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         199 AEGGPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       199 ~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      .. ++||+|+++....        ..+..+.+.|||||++++...+
T Consensus       113 ~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  157 (348)
T 2y1w_A          113 LP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGD  157 (348)
T ss_dssp             CS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCEEE
T ss_pred             CC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEecCc
Confidence            43 5899999986542        2455678999999999966543

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.30  E-value=2.2e-11  Score=113.84  Aligned_cols=110  Identities=15%  Similarity=0.061  Sum_probs=84.6

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCc---cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQ---GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK  192 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGs---G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~  192 (364)
                      ...++++.+.. .....+|||||||+   |.++..+.+.    +|+++|+|+.|++.|++++..       .++++++.+
T Consensus        64 ~~~~~~~~l~~-~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~-------~~~v~~~~~  135 (274)
T 2qe6_A           64 VLVRGVRFLAG-EAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK-------DPNTAVFTA  135 (274)
T ss_dssp             HHHHHHHHHHT-TTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT-------CTTEEEEEC
T ss_pred             HHHHHHHHHhh-ccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC-------CCCeEEEEe
Confidence            44555565541 13447999999999   9887766543    999999999999999998854       248999999


Q ss_pred             CCCCCC-----------CCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         193 DARWGH-----------AEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       193 D~~~~~-----------~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      |+.+..           .+..+||+|+++..+++        +++++.+.|||||+|++.....
T Consensus       136 D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          136 DVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             CTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             eCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence            987521           12247999999887754        6789999999999999988654

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.30  E-value=7e-12  Score=117.87  Aligned_cols=92  Identities=17%  Similarity=0.184  Sum_probs=77.6

Q ss_pred             ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830         116 EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD  193 (364)
Q Consensus       116 s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D  193 (364)
                      ..|.++..+++.+.  +.++.+|||+|||+|.++..+++.  +|+++|+|+.+++.+++++....   . .++++++.+|
T Consensus        12 ~d~~i~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~-~~~v~~~~~D   85 (285)
T 1zq9_A           12 KNPLIINSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTP---V-ASKLQVLVGD   85 (285)
T ss_dssp             CCHHHHHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTST---T-GGGEEEEESC
T ss_pred             CCHHHHHHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcC---C-CCceEEEEcc
Confidence            57788899998886  678999999999999999999987  99999999999999999986511   1 1489999999


Q ss_pred             CCCCCCCCCCeeEEEEccChHH
Q psy7830         194 ARWGHAEGGPYDVIFFGAGTTE  215 (364)
Q Consensus       194 ~~~~~~~~~~fD~Ii~~~~~~~  215 (364)
                      +.....  ..||+|++|.+++.
T Consensus        86 ~~~~~~--~~fD~vv~nlpy~~  105 (285)
T 1zq9_A           86 VLKTDL--PFFDTCVANLPYQI  105 (285)
T ss_dssp             TTTSCC--CCCSEEEEECCGGG
T ss_pred             eecccc--hhhcEEEEecCccc
Confidence            987643  37999999988754

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.30  E-value=9.5e-12  Score=118.03  Aligned_cols=103  Identities=21%  Similarity=0.204  Sum_probs=82.8

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHh-cCCCCCCCCCEEEEEcCCCCCCC--CCCCee
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKI-SRPDLLQSKTLEFILKDARWGHA--EGGPYD  205 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~-~~~~~l~~~~v~~~~~D~~~~~~--~~~~fD  205 (364)
                      .++.+|||+|||+|..+..+++.    +|+++|+|+.+++.+++++.. +..  ...++++++.+|+.....  ..++||
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~--~~~~~v~~~~~D~~~~~~~~~~~~fD  171 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRS--LADPRATVRVGDGLAFVRQTPDNTYD  171 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG--GGCTTEEEEESCHHHHHHSSCTTCEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcc--cCCCcEEEEECcHHHHHHhccCCcee
Confidence            56789999999999999999876    899999999999999998742 100  223689999999876543  257899


Q ss_pred             EEEEccCh----------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         206 VIFFGAGT----------TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       206 ~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +|+++...          ..+++.+.+.|||||++++.....
T Consensus       172 vIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~  213 (304)
T 3bwc_A          172 VVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI  213 (304)
T ss_dssp             EEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred             EEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc
Confidence            99998653          246789999999999999987654

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.29  E-value=5.7e-12  Score=118.20  Aligned_cols=102  Identities=19%  Similarity=0.161  Sum_probs=82.0

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCC-------CCCCEEEEEcCCCCCCCCCC
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLL-------QSKTLEFILKDARWGHAEGG  202 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l-------~~~~v~~~~~D~~~~~~~~~  202 (364)
                      ..+.+|||+|||+|.++..+++.   +|+++|+|+.+++.|++++ ... ..+       ..++++++.+|+.......+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~-~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~  151 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KID-NGLLEAMLNGKHEKAKLTIGDGFEFIKNNR  151 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTT-TTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhc-cccccccccCCCCcEEEEECchHHHhcccC
Confidence            56789999999999999999876   9999999999999999998 410 002       24689999999865322146


Q ss_pred             CeeEEEEccCh----------HHHHHHHHhccCCCcEEEEEEcC
Q psy7830         203 PYDVIFFGAGT----------TEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       203 ~fD~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +||+|+++...          ..+++.+.+.|+|||++++..+.
T Consensus       152 ~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~  195 (281)
T 1mjf_A          152 GFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS  195 (281)
T ss_dssp             CEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            89999998763          45678999999999999998654

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.28  E-value=4.1e-11  Score=116.76  Aligned_cols=115  Identities=11%  Similarity=-0.019  Sum_probs=87.6

Q ss_pred             ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830         116 EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL  191 (364)
Q Consensus       116 s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~  191 (364)
                      ..+..+..++........++.+|||+| |+|.++..++..    +|+++|+|+.+++.|++|+..+.     ..+++++.
T Consensus       154 ~~~~~~~~~l~~~~~~~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g-----~~~v~~~~  227 (373)
T 2qm3_A          154 TPETTVARVILMHTRGDLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIG-----YEDIEIFT  227 (373)
T ss_dssp             CHHHHHHHHHHHHHTTCSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHT-----CCCEEEEC
T ss_pred             CHHHHHHHHHHHhhcCCCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCEEEEE
Confidence            334444444433221134689999999 999999988865    89999999999999999998832     34899999


Q ss_pred             cCCCC-CCC-CCCCeeEEEEccChH-----HHHHHHHhccCCCc-EEEEEEcC
Q psy7830         192 KDARW-GHA-EGGPYDVIFFGAGTT-----EVSKTILSQLKPNG-RIVAPVGN  236 (364)
Q Consensus       192 ~D~~~-~~~-~~~~fD~Ii~~~~~~-----~l~~~l~~~LkpGG-~Lvi~~~~  236 (364)
                      +|+.. ++. ..++||+|++|.++.     .++..+.+.||||| .+++++..
T Consensus       228 ~D~~~~l~~~~~~~fD~Vi~~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          228 FDLRKPLPDYALHKFDTFITDPPETLEAIRAFVGRGIATLKGPRCAGYFGITR  280 (373)
T ss_dssp             CCTTSCCCTTTSSCBSEEEECCCSSHHHHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred             ChhhhhchhhccCCccEEEECCCCchHHHHHHHHHHHHHcccCCeEEEEEEec
Confidence            99987 432 235899999997763     46788999999999 45777765

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.28  E-value=7.6e-12  Score=122.36  Aligned_cols=106  Identities=18%  Similarity=0.152  Sum_probs=87.3

Q ss_pred             HHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC---
Q psy7830         126 EQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE---  200 (364)
Q Consensus       126 ~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~---  200 (364)
                      ..+.. + ++.+|||+|||+|.++..++..  +|+++|+++.+++.|++|+..+.     ..+++++.+|+.+....   
T Consensus       203 ~~~~~-~-~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~-----~~~~~~~~~d~~~~~~~~~~  275 (382)
T 1wxx_A          203 LYMER-F-RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNG-----LGNVRVLEANAFDLLRRLEK  275 (382)
T ss_dssp             HHGGG-C-CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTT-----CTTEEEEESCHHHHHHHHHH
T ss_pred             HHHHh-c-CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcC-----CCCceEEECCHHHHHHHHHh
Confidence            34443 4 7889999999999999999887  99999999999999999998843     45699999998765331   


Q ss_pred             -CCCeeEEEEccCh---------------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         201 -GGPYDVIFFGAGT---------------TEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       201 -~~~fD~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                       ..+||+|+++.+.               ..++..+.+.|+|||+|+++.....
T Consensus       276 ~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  329 (382)
T 1wxx_A          276 EGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH  329 (382)
T ss_dssp             TTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             cCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence             4689999998754               2467889999999999999987654

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.28  E-value=6.3e-12  Score=119.36  Aligned_cols=102  Identities=20%  Similarity=0.143  Sum_probs=82.0

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHh--cCCCCCCCCCEEEEEcCCCCCC-CCCCCee
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKI--SRPDLLQSKTLEFILKDARWGH-AEGGPYD  205 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~--~~~~~l~~~~v~~~~~D~~~~~-~~~~~fD  205 (364)
                      ..+.+|||||||+|.++..+++.    +|+++|+|+.+++.|++++..  +.   +..++++++.+|+.... ...++||
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~---~~~~rv~v~~~Da~~~l~~~~~~fD  170 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIG---YSSSKLTLHVGDGFEFMKQNQDAFD  170 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG---GGCTTEEEEESCHHHHHHTCSSCEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcc---cCCCcEEEEECcHHHHHhhCCCCce
Confidence            46689999999999999999876    899999999999999998764  11   22368999999986532 2246899


Q ss_pred             EEEEccChH----------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         206 VIFFGAGTT----------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       206 ~Ii~~~~~~----------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +|+++...+          .+++.+.+.|+|||++++.....
T Consensus       171 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~  212 (304)
T 2o07_A          171 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQ  212 (304)
T ss_dssp             EEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             EEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCc
Confidence            999987642          36789999999999999987543

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.28  E-value=1.2e-11  Score=120.78  Aligned_cols=98  Identities=20%  Similarity=0.147  Sum_probs=81.5

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      +.++.+|||+|||+|.++..+++.   +|+|+|++ .+++.|++++..+.   + .++++++.+|+.+...+ ++||+|+
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~---~-~~~v~~~~~d~~~~~~~-~~~D~Iv  134 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANN---L-DHIVEVIEGSVEDISLP-EKVDVII  134 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTT---C-TTTEEEEESCGGGCCCS-SCEEEEE
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcC---C-CCeEEEEECchhhcCcC-CcceEEE
Confidence            467899999999999999999987   89999999 99999999988733   2 14699999999887654 7899999


Q ss_pred             EccC---------hHHHHHHHHhccCCCcEEEEEEc
Q psy7830         209 FGAG---------TTEVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       209 ~~~~---------~~~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      ++..         ...++..+.+.|||||++++...
T Consensus       135 ~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~  170 (376)
T 3r0q_C          135 SEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHA  170 (376)
T ss_dssp             ECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred             EcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence            9652         23467888899999999986543

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.27  E-value=2e-11  Score=109.53  Aligned_cols=98  Identities=15%  Similarity=0.105  Sum_probs=80.0

Q ss_pred             HHHHhccCCCCCEEEEECCCccHHHHHHHcceEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCe
Q psy7830         125 LEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPY  204 (364)
Q Consensus       125 l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~f  204 (364)
                      ++.+.. ..++.+|||+|||+|.++..++..  +++|+++.+++.++++            +++++.+|+...+...++|
T Consensus        39 ~~~l~~-~~~~~~vLDiG~G~G~~~~~l~~~--~~vD~s~~~~~~a~~~------------~~~~~~~d~~~~~~~~~~f  103 (219)
T 1vlm_A           39 LQAVKC-LLPEGRGVEIGVGTGRFAVPLKIK--IGVEPSERMAEIARKR------------GVFVLKGTAENLPLKDESF  103 (219)
T ss_dssp             HHHHHH-HCCSSCEEEETCTTSTTHHHHTCC--EEEESCHHHHHHHHHT------------TCEEEECBTTBCCSCTTCE
T ss_pred             HHHHHH-hCCCCcEEEeCCCCCHHHHHHHHH--hccCCCHHHHHHHHhc------------CCEEEEcccccCCCCCCCe
Confidence            344443 234889999999999999988875  9999999999998874            4678899988766556789


Q ss_pred             eEEEEccChHH------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         205 DVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       205 D~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      |+|+++..+++      ++.++.+.|+|||++++.....
T Consensus       104 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  142 (219)
T 1vlm_A          104 DFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDR  142 (219)
T ss_dssp             EEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             eEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeCC
Confidence            99999887654      6789999999999999987654

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.27  E-value=1e-11  Score=121.69  Aligned_cols=103  Identities=18%  Similarity=0.163  Sum_probs=83.7

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC----CCCCee
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA----EGGPYD  205 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~----~~~~fD  205 (364)
                      .++.+|||+|||+|.++..++..   +|+++|+|+.+++.|++|++.+.   +...+++++++|+.+...    ...+||
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~---~~~~~v~~~~~D~~~~l~~~~~~~~~fD  287 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANH---LDMANHQLVVMDVFDYFKYARRHHLTYD  287 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTT---CCCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC---CCccceEEEECCHHHHHHHHHHhCCCcc
Confidence            67899999999999999999985   89999999999999999998843   221289999999876332    135899


Q ss_pred             EEEEccChH---------------HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         206 VIFFGAGTT---------------EVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       206 ~Ii~~~~~~---------------~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      +|+++.+..               .++..+.+.|+|||+|+++.....
T Consensus       288 ~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~  335 (385)
T 2b78_A          288 IIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN  335 (385)
T ss_dssp             EEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             EEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence            999976651               145667899999999999987764

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.27  E-value=4.3e-11  Score=118.65  Aligned_cols=112  Identities=14%  Similarity=0.146  Sum_probs=90.4

Q ss_pred             hHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC
Q psy7830         117 PPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA  194 (364)
Q Consensus       117 ~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~  194 (364)
                      .+.....+++++.+ +.++.+|||+|||+|.++..+++.  +|+|+|+++.+++.|++|+..+.     .. ++++.+|+
T Consensus       274 n~~~~e~l~~~~~~-~~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ng-----l~-v~~~~~d~  346 (425)
T 2jjq_A          274 NSYQAVNLVRKVSE-LVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINN-----VD-AEFEVASD  346 (425)
T ss_dssp             BHHHHHHHHHHHHH-HCCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT-----CC-EEEEECCT
T ss_pred             CHHHHHHHHHHhhc-cCCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcC-----Cc-EEEEECCh
Confidence            45556666666654 678899999999999999999987  99999999999999999998743     34 99999999


Q ss_pred             CCCCCCCCCeeEEEEccChH----HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         195 RWGHAEGGPYDVIFFGAGTT----EVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       195 ~~~~~~~~~fD~Ii~~~~~~----~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      .+....  +||+|+++.+..    .+.+.+. .|+|||+++++..+..
T Consensus       347 ~~~~~~--~fD~Vv~dPPr~g~~~~~~~~l~-~l~p~givyvsc~p~t  391 (425)
T 2jjq_A          347 REVSVK--GFDTVIVDPPRAGLHPRLVKRLN-REKPGVIVYVSCNPET  391 (425)
T ss_dssp             TTCCCT--TCSEEEECCCTTCSCHHHHHHHH-HHCCSEEEEEESCHHH
T ss_pred             HHcCcc--CCCEEEEcCCccchHHHHHHHHH-hcCCCcEEEEECChHH
Confidence            876543  899999998753    3455554 5899999999986543

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.27  E-value=1.4e-11  Score=110.05  Aligned_cols=93  Identities=25%  Similarity=0.321  Sum_probs=77.7

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC--CCCCCCCeeEEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW--GHAEGGPYDVIF  208 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~--~~~~~~~fD~Ii  208 (364)
                      .++.+|||+|||+|.++..+++.  +|+++|+++.+++.++++.            .++..+|+..  ....+++||+|+
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~------------~~~~~~d~~~~~~~~~~~~fD~v~   98 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL------------DHVVLGDIETMDMPYEEEQFDCVI   98 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS------------SEEEESCTTTCCCCSCTTCEEEEE
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC------------CcEEEcchhhcCCCCCCCccCEEE
Confidence            57889999999999999999987  9999999999999887653            2578888865  333357899999


Q ss_pred             EccChHH------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         209 FGAGTTE------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       209 ~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ++..+++      ++.++.+.|+|||++++.+...
T Consensus        99 ~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  133 (230)
T 3cc8_A           99 FGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNV  133 (230)
T ss_dssp             EESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECT
T ss_pred             ECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            9877754      6788999999999999988654

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.26  E-value=1.4e-11  Score=121.02  Aligned_cols=102  Identities=21%  Similarity=0.257  Sum_probs=84.9

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCC-CEEEEEcCCCCCCC----CCCC
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSK-TLEFILKDARWGHA----EGGP  203 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~-~v~~~~~D~~~~~~----~~~~  203 (364)
                      .+++.+|||+|||+|.++..++..   +|+++|+++.+++.|++|+..+.     .. +++++.+|+.+...    ...+
T Consensus       215 ~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~-----~~~~v~~~~~d~~~~~~~~~~~~~~  289 (396)
T 2as0_A          215 VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNG-----VEDRMKFIVGSAFEEMEKLQKKGEK  289 (396)
T ss_dssp             CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT-----CGGGEEEEESCHHHHHHHHHHTTCC
T ss_pred             hhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCccceEEECCHHHHHHHHHhhCCC
Confidence            348899999999999999999876   89999999999999999998843     33 89999999876532    1468


Q ss_pred             eeEEEEccCh---------------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         204 YDVIFFGAGT---------------TEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       204 fD~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      ||+|+++.+.               ..++..+.+.|+|||+|+++.....
T Consensus       290 fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  339 (396)
T 2as0_A          290 FDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH  339 (396)
T ss_dssp             EEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred             CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC
Confidence            9999998654               2366889999999999998886653

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.26  E-value=1.7e-11  Score=120.33  Aligned_cols=101  Identities=19%  Similarity=0.169  Sum_probs=85.2

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCC-C-CEEEEEcCCCCCCCC----CCC
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQS-K-TLEFILKDARWGHAE----GGP  203 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~-~-~v~~~~~D~~~~~~~----~~~  203 (364)
                      .++.+|||+|||+|.++..++..   +|+++|+++.+++.|++|+..+.     . . +++++.+|+.+....    ..+
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ng-----l~~~~v~~~~~D~~~~~~~~~~~~~~  293 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNK-----LDLSKAEFVRDDVFKLLRTYRDRGEK  293 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT-----CCGGGEEEEESCHHHHHHHHHHTTCC
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCccceEEEECCHHHHHHHHHhcCCC
Confidence            57899999999999999999876   89999999999999999998843     3 3 899999998765321    358


Q ss_pred             eeEEEEccCh---------------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         204 YDVIFFGAGT---------------TEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       204 fD~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      ||+|+++.+.               ..++..+.+.|+|||+++++.....
T Consensus       294 fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  343 (396)
T 3c0k_A          294 FDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGL  343 (396)
T ss_dssp             EEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             CCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence            9999998654               3567789999999999999887754

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.26  E-value=1.5e-11  Score=123.76  Aligned_cols=98  Identities=16%  Similarity=0.116  Sum_probs=79.3

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      ..++.+|||+|||+|.++..+++.   +|+++|+++ +++.|++++..+.   + .++++++.+|+.+.... ++||+|+
T Consensus       156 ~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~g---l-~~~v~~~~~d~~~~~~~-~~fD~Iv  229 (480)
T 3b3j_A          156 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNN---L-TDRIVVIPGKVEEVSLP-EQVDIII  229 (480)
T ss_dssp             GTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTT---C-TTTEEEEESCTTTCCCS-SCEEEEE
T ss_pred             hcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcC---C-CCcEEEEECchhhCccC-CCeEEEE
Confidence            357889999999999999998876   899999998 9999999988732   2 15899999999875433 5899999


Q ss_pred             EccChHH--------HHHHHHhccCCCcEEEEEEc
Q psy7830         209 FGAGTTE--------VSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       209 ~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      ++.+..+        .+..+.+.|||||++++..+
T Consensus       230 s~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~~  264 (480)
T 3b3j_A          230 SEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIG  264 (480)
T ss_dssp             CCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESCEE
T ss_pred             EeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            9877432        23456799999999996553

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.26  E-value=1.4e-11  Score=117.80  Aligned_cols=102  Identities=22%  Similarity=0.225  Sum_probs=82.9

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHh--cCCCCCCCCCEEEEEcCCCCCC-CCCCCee
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKI--SRPDLLQSKTLEFILKDARWGH-AEGGPYD  205 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~--~~~~~l~~~~v~~~~~D~~~~~-~~~~~fD  205 (364)
                      ..+.+|||+|||+|.++..+++.    +|+++|+|+.+++.|++++..  +.   ++.++++++.+|+.... ...++||
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~---~~~~~v~~~~~D~~~~l~~~~~~fD  191 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCG---YEDKRVNVFIEDASKFLENVTNTYD  191 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGG---GGSTTEEEEESCHHHHHHHCCSCEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccc---cCCCcEEEEEccHHHHHhhcCCCce
Confidence            46689999999999999999876    899999999999999999864  11   22368999999986532 1246899


Q ss_pred             EEEEccCh----------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         206 VIFFGAGT----------TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       206 ~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +|+++...          ..+++.+.+.|||||++++.....
T Consensus       192 vIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~  233 (321)
T 2pt6_A          192 VIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESL  233 (321)
T ss_dssp             EEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred             EEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCc
Confidence            99988631          467889999999999999987654

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.26  E-value=1.2e-11  Score=117.81  Aligned_cols=96  Identities=23%  Similarity=0.177  Sum_probs=80.0

Q ss_pred             CEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC--CCCCeeEEEE
Q psy7830         136 SRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA--EGGPYDVIFF  209 (364)
Q Consensus       136 ~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~--~~~~fD~Ii~  209 (364)
                      .+|||||||+|.++..+++.    +|++||+|+.+++.|++++..     ...++++++.+|+.....  ..++||+|++
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~-----~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~  165 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDI-----PRAPRVKIRVDDARMVAESFTPASRDVIIR  165 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCC-----CCTTTEEEEESCHHHHHHTCCTTCEEEEEE
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccc-----cCCCceEEEECcHHHHHhhccCCCCCEEEE
Confidence            49999999999999999983    899999999999999998854     123689999999876532  2468999999


Q ss_pred             ccCh----------HHHHHHHHhccCCCcEEEEEEcC
Q psy7830         210 GAGT----------TEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       210 ~~~~----------~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +...          ..+++.+.+.|+|||++++....
T Consensus       166 D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~  202 (317)
T 3gjy_A          166 DVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGD  202 (317)
T ss_dssp             CCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence            7532          35788999999999999998864

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.25  E-value=6.6e-11  Score=117.61  Aligned_cols=111  Identities=20%  Similarity=0.265  Sum_probs=86.4

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG  197 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~  197 (364)
                      ++..+++++.  +.++.+|||+|||+|.++..+++.  +|+|+|+++.+++.|++|+..+.     ..|++++.+|+.+.
T Consensus       274 l~~~~~~~l~--~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~-----~~~v~f~~~d~~~~  346 (433)
T 1uwv_A          274 MVARALEWLD--VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNG-----LQNVTFYHENLEED  346 (433)
T ss_dssp             HHHHHHHHHT--CCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCTTSC
T ss_pred             HHHHHHHhhc--CCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEECCHHHH
Confidence            3344444443  467889999999999999999988  99999999999999999998733     45899999999874


Q ss_pred             CC----CCCCeeEEEEccChH---HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         198 HA----EGGPYDVIFFGAGTT---EVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       198 ~~----~~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      ..    ..++||+|++|.+..   .+.+.+. .++|+++++++.....
T Consensus       347 l~~~~~~~~~fD~Vv~dPPr~g~~~~~~~l~-~~~p~~ivyvsc~p~t  393 (433)
T 1uwv_A          347 VTKQPWAKNGFDKVLLDPARAGAAGVMQQII-KLEPIRIVYVSCNPAT  393 (433)
T ss_dssp             CSSSGGGTTCCSEEEECCCTTCCHHHHHHHH-HHCCSEEEEEESCHHH
T ss_pred             hhhhhhhcCCCCEEEECCCCccHHHHHHHHH-hcCCCeEEEEECChHH
Confidence            32    245799999997754   3444444 3689999999886643

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.25  E-value=2.6e-11  Score=114.73  Aligned_cols=95  Identities=17%  Similarity=0.136  Sum_probs=76.8

Q ss_pred             cChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830         115 MEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK  192 (364)
Q Consensus       115 ~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~  192 (364)
                      ...|.++..+++.+.  +.++.+|||+|||+|.++..+++.  +|+|+|+|+.+++.+++++..+     +.++++++.+
T Consensus        25 l~~~~i~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~-----~~~~v~~~~~   97 (299)
T 2h1r_A           25 LKNPGILDKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYE-----GYNNLEVYEG   97 (299)
T ss_dssp             ECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHT-----TCCCEEC---
T ss_pred             ecCHHHHHHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHc-----CCCceEEEEC
Confidence            357888899999886  678999999999999999999987  9999999999999999998762     2368999999


Q ss_pred             CCCCCCCCCCCeeEEEEccChHHHHH
Q psy7830         193 DARWGHAEGGPYDVIFFGAGTTEVSK  218 (364)
Q Consensus       193 D~~~~~~~~~~fD~Ii~~~~~~~l~~  218 (364)
                      |+.....  .+||+|++|.++....+
T Consensus        98 D~~~~~~--~~~D~Vv~n~py~~~~~  121 (299)
T 2h1r_A           98 DAIKTVF--PKFDVCTANIPYKISSP  121 (299)
T ss_dssp             -CCSSCC--CCCSEEEEECCGGGHHH
T ss_pred             chhhCCc--ccCCEEEEcCCcccccH
Confidence            9987653  47999999988765433

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.25  E-value=2.3e-11  Score=118.57  Aligned_cols=96  Identities=15%  Similarity=0.126  Sum_probs=77.9

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF  209 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~  209 (364)
                      .+|..|||||||+|.++..+++.   +|+|||.++ +++.|+++++.|.   + .++|+++.+|+.+...+ ++||+|++
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~---~-~~~i~~i~~~~~~~~lp-e~~Dvivs  155 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNG---L-EDRVHVLPGPVETVELP-EQVDAIVS  155 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTT---C-TTTEEEEESCTTTCCCS-SCEEEEEC
T ss_pred             cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcC---C-CceEEEEeeeeeeecCC-ccccEEEe
Confidence            47899999999999999998887   899999996 8899999988854   3 25799999999877553 68999997


Q ss_pred             ccC---------hHHHHHHHHhccCCCcEEEEEE
Q psy7830         210 GAG---------TTEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       210 ~~~---------~~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ...         +..++....++|||||+++-..
T Consensus       156 E~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~  189 (376)
T 4hc4_A          156 EWMGYGLLHESMLSSVLHARTKWLKEGGLLLPAS  189 (376)
T ss_dssp             CCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESCE
T ss_pred             ecccccccccchhhhHHHHHHhhCCCCceECCcc
Confidence            422         2346677789999999987543

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.24  E-value=3.1e-11  Score=126.78  Aligned_cols=102  Identities=18%  Similarity=0.199  Sum_probs=85.0

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC-CCCCeeEEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA-EGGPYDVIF  208 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~-~~~~fD~Ii  208 (364)
                      .+|.+|||+|||+|.+++.++..   +|+++|+|+.+++.|++|++.|.   +...+++++++|+.+... ..++||+|+
T Consensus       538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ng---l~~~~v~~i~~D~~~~l~~~~~~fD~Ii  614 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNG---LTGRAHRLIQADCLAWLREANEQFDLIF  614 (703)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT---CCSTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCccceEEEecCHHHHHHhcCCCccEEE
Confidence            47899999999999999998876   79999999999999999998854   332489999999876432 246899999


Q ss_pred             EccCh-----------------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         209 FGAGT-----------------TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       209 ~~~~~-----------------~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ++.+.                 ..++..+.++|+|||+|+++....
T Consensus       615 ~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~  660 (703)
T 3v97_A          615 IDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKR  660 (703)
T ss_dssp             ECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred             ECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence            98763                 135778899999999999988774

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.24  E-value=1.7e-11  Score=119.33  Aligned_cols=117  Identities=14%  Similarity=0.094  Sum_probs=89.2

Q ss_pred             ChHHHHHHHHHHHhccCC-CCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830         116 EPPSYIARCLEQLVDHLQ-NGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK  192 (364)
Q Consensus       116 s~P~~~a~~l~~L~~~l~-~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~  192 (364)
                      ..+.....+++++.+.+. .+.+|||+|||+|.+++.+++.  +|+++|+++.+++.|++|++.+.     .+|++++.+
T Consensus       194 ~n~~~~~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng-----~~~v~~~~~  268 (369)
T 3bt7_A          194 PNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANH-----IDNVQIIRM  268 (369)
T ss_dssp             SBHHHHHHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTT-----CCSEEEECC
T ss_pred             CCHHHHHHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcC-----CCceEEEEC
Confidence            344444555554433332 3679999999999999999987  99999999999999999998843     468999999


Q ss_pred             CCCCCCC---CC-------------CCeeEEEEccChHHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         193 DARWGHA---EG-------------GPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       193 D~~~~~~---~~-------------~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      |+.+...   ..             .+||+|+++.+...+...+.+.|+++|++++...++
T Consensus       269 d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~~~~~~~~l~~~g~ivyvsc~p  329 (369)
T 3bt7_A          269 AAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPRILYISCNP  329 (369)
T ss_dssp             CSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTCCCHHHHHHHTTSSEEEEEESCH
T ss_pred             CHHHHHHHHhhccccccccccccccCCCCEEEECcCccccHHHHHHHHhCCCEEEEEECCH
Confidence            9875421   11             379999999887766677788888888887766554

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.24  E-value=7.5e-11  Score=110.40  Aligned_cols=115  Identities=15%  Similarity=0.133  Sum_probs=80.9

Q ss_pred             HHHHHHHhcc--CCCCCEEEEECCCccHHHHHHHcc---eEEEEeC-CHHHHHHHHHHHHhcCCCCCCC-----CCEEEE
Q psy7830         122 ARCLEQLVDH--LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLL-LPETLNNSLKNIKISRPDLLQS-----KTLEFI  190 (364)
Q Consensus       122 a~~l~~L~~~--l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDi-s~~~l~~a~~~~~~~~~~~l~~-----~~v~~~  190 (364)
                      ..+.+++..+  ..++.+|||+|||+|.++..+++.   +|+++|+ ++.+++.+++|+..|.....+.     +++++.
T Consensus        65 ~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~  144 (281)
T 3bzb_A           65 RALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVV  144 (281)
T ss_dssp             HHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEE
T ss_pred             HHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEE
Confidence            3444444433  257889999999999999998886   8999999 8999999999994321000112     368888


Q ss_pred             EcCCCCCC---C---CCCCeeEEEEccCh------HHHHHHHHhccC---C--CcEEEEEEcC
Q psy7830         191 LKDARWGH---A---EGGPYDVIFFGAGT------TEVSKTILSQLK---P--NGRIVAPVGN  236 (364)
Q Consensus       191 ~~D~~~~~---~---~~~~fD~Ii~~~~~------~~l~~~l~~~Lk---p--GG~Lvi~~~~  236 (364)
                      ..|..+..   .   ..++||+|++...+      ..+++.+.++|+   |  ||++++....
T Consensus       145 ~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~  207 (281)
T 3bzb_A          145 PYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTH  207 (281)
T ss_dssp             ECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC
T ss_pred             EecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEe
Confidence            66643321   1   24689999984433      357889999999   9  9998876544

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.24  E-value=2.4e-11  Score=107.50  Aligned_cols=101  Identities=17%  Similarity=0.038  Sum_probs=76.1

Q ss_pred             HHHHHHHhcc--CCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830         122 ARCLEQLVDH--LQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG  197 (364)
Q Consensus       122 a~~l~~L~~~--l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~  197 (364)
                      -++++.+..+  ++++.+|||+|||+|.++..+++.  +|+|+|+++..         .       .++++++++|+...
T Consensus        11 ~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~---------~-------~~~v~~~~~D~~~~   74 (191)
T 3dou_A           11 FKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME---------E-------IAGVRFIRCDIFKE   74 (191)
T ss_dssp             HHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC---------C-------CTTCEEEECCTTSS
T ss_pred             HHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc---------c-------CCCeEEEEccccCH
Confidence            3444444432  578999999999999999999988  99999999741         1       25899999998764


Q ss_pred             CCC-----------CCCeeEEEEccCh-----------------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         198 HAE-----------GGPYDVIFFGAGT-----------------TEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       198 ~~~-----------~~~fD~Ii~~~~~-----------------~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      ...           .++||+|+++...                 ..++..+.++|||||.+++.+....
T Consensus        75 ~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~  143 (191)
T 3dou_A           75 TIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGD  143 (191)
T ss_dssp             SHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST
T ss_pred             HHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCC
Confidence            310           0489999997642                 1245678899999999998886543

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.24  E-value=1e-10  Score=103.60  Aligned_cols=109  Identities=12%  Similarity=0.086  Sum_probs=83.1

Q ss_pred             ccChHHHHHHHHHHHhcc-CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEE
Q psy7830         114 VMEPPSYIARCLEQLVDH-LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEF  189 (364)
Q Consensus       114 ~~s~P~~~a~~l~~L~~~-l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~  189 (364)
                      ..+.+.+...++..+... ..++.+|||+|||+|.++..+++.   +|+++|+++.+++.+++++..+.     . ++++
T Consensus        28 ~~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-----~-~~~~  101 (207)
T 1wy7_A           28 YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFK-----G-KFKV  101 (207)
T ss_dssp             CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGT-----T-SEEE
T ss_pred             ecCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcC-----C-CEEE
Confidence            444555666666655421 347889999999999999999877   79999999999999999987732     3 7999


Q ss_pred             EEcCCCCCCCCCCCeeEEEEccChH--------HHHHHHHhccCCCcEEEEE
Q psy7830         190 ILKDARWGHAEGGPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       190 ~~~D~~~~~~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +.+|+....   .+||+|++|.++.        .+++.+.+.+  ||.+++.
T Consensus       102 ~~~d~~~~~---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~  148 (207)
T 1wy7_A          102 FIGDVSEFN---SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIH  148 (207)
T ss_dssp             EESCGGGCC---CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred             EECchHHcC---CCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEEE
Confidence            999998753   4899999998752        3567777777  5544443

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.24  E-value=1.8e-11  Score=116.76  Aligned_cols=104  Identities=16%  Similarity=0.098  Sum_probs=81.4

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC-CCCCCeeEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH-AEGGPYDVI  207 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~-~~~~~fD~I  207 (364)
                      ..+.+|||||||+|..+..+++.    +|+++|+|+.+++.|++++..... .+..++++++.+|+.... ...++||+|
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~-~~~~~rv~~~~~D~~~~l~~~~~~fD~I  185 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSC-GFSHPKLDLFCGDGFEFLKNHKNEFDVI  185 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSG-GGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhcc-ccCCCCEEEEEChHHHHHHhcCCCceEE
Confidence            45689999999999999999876    899999999999999999864100 022368999999987532 234689999


Q ss_pred             EEccCh----------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         208 FFGAGT----------TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       208 i~~~~~----------~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +++...          ..+++.+.+.|+|||++++..+..
T Consensus       186 i~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~  225 (314)
T 2b2c_A          186 ITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESV  225 (314)
T ss_dssp             EECCC-------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred             EEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCc
Confidence            988742          356789999999999999987553

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.23  E-value=5.8e-11  Score=113.12  Aligned_cols=108  Identities=15%  Similarity=0.096  Sum_probs=85.4

Q ss_pred             HHHHHHHHhccC--CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC
Q psy7830         121 IARCLEQLVDHL--QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA  194 (364)
Q Consensus       121 ~a~~l~~L~~~l--~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~  194 (364)
                      ...+++.+.  .  .++.+|||+|||+|.++..+++.    +++++|++ .+++.+++++....   + .+++++..+|+
T Consensus       152 ~~~~~~~~~--~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~---~-~~~v~~~~~d~  224 (335)
T 2r3s_A          152 AQLIAQLVN--ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQG---V-ASRYHTIAGSA  224 (335)
T ss_dssp             HHHHHHHHT--C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHT---C-GGGEEEEESCT
T ss_pred             HHHHHHhcc--cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcC---C-CcceEEEeccc
Confidence            345555554  4  67889999999999999998875    89999999 99999999987621   1 13699999999


Q ss_pred             CCCCCCCCCeeEEEEccChH--------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         195 RWGHAEGGPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       195 ~~~~~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ...... ..||+|++...++        .+++++.+.|+|||++++....
T Consensus       225 ~~~~~~-~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  273 (335)
T 2r3s_A          225 FEVDYG-NDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFI  273 (335)
T ss_dssp             TTSCCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ccCCCC-CCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeec
Confidence            875443 3499999976664        3678899999999999887644

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.23  E-value=1.6e-12  Score=118.79  Aligned_cols=109  Identities=17%  Similarity=0.164  Sum_probs=73.1

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHh-cCCCCCCCCCEEEEE-cCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKI-SRPDLLQSKTLEFIL-KDA  194 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~-~~~~~l~~~~v~~~~-~D~  194 (364)
                      ....+++.+.. ...+.+|||+|||+|.++..+++.   +|+|+|+++.|++.++++..+ ..   ....++.+.. .|.
T Consensus        24 kL~~~L~~~~~-~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~---~~~~~~~~~~~~~~   99 (232)
T 3opn_A           24 KLEKALKEFHL-EINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVV---MEQFNFRNAVLADF   99 (232)
T ss_dssp             HHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEE---ECSCCGGGCCGGGC
T ss_pred             HHHHHHHHcCC-CCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccc---cccceEEEeCHhHc
Confidence            34566666641 235779999999999999999887   899999999999998776433 00   0111233322 222


Q ss_pred             CCCCCCCCCeeEEEEccChHHHHHHHHhccCCCcEEEEEE
Q psy7830         195 RWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       195 ~~~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ....+....||+++++  +..+++++.++|||||++++.+
T Consensus       100 ~~~~~d~~~~D~v~~~--l~~~l~~i~rvLkpgG~lv~~~  137 (232)
T 3opn_A          100 EQGRPSFTSIDVSFIS--LDLILPPLYEILEKNGEVAALI  137 (232)
T ss_dssp             CSCCCSEEEECCSSSC--GGGTHHHHHHHSCTTCEEEEEE
T ss_pred             CcCCCCEEEEEEEhhh--HHHHHHHHHHhccCCCEEEEEE
Confidence            2111222346655544  3678899999999999999975

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.23  E-value=5e-11  Score=115.52  Aligned_cols=104  Identities=16%  Similarity=0.140  Sum_probs=83.3

Q ss_pred             HHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC
Q psy7830         123 RCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH  198 (364)
Q Consensus       123 ~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~  198 (364)
                      .+++.+.  +.++.+|||+|||+|.++..+++.    +++++|+ +.+++.+++++....   + .++++++.+|+.+..
T Consensus       173 ~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~---~-~~~v~~~~~d~~~~~  245 (374)
T 1qzz_A          173 APADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG---L-ADRVTVAEGDFFKPL  245 (374)
T ss_dssp             HHHHTSC--CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT---C-TTTEEEEECCTTSCC
T ss_pred             HHHHhCC--CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcC---C-CCceEEEeCCCCCcC
Confidence            3444443  467889999999999999998876    8999999 999999999987722   1 138999999987633


Q ss_pred             CCCCCeeEEEEccChH--------HHHHHHHhccCCCcEEEEEEc
Q psy7830         199 AEGGPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       199 ~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      +  ..||+|+++..++        .+++++.+.|||||++++...
T Consensus       246 ~--~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          246 P--VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             S--CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             C--CCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            2  2499999987774        367899999999999998765

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.23  E-value=8.9e-11  Score=113.43  Aligned_cols=106  Identities=19%  Similarity=0.196  Sum_probs=84.4

Q ss_pred             HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      ...+++.+.  ..++.+|||+|||+|.++..+++.    +++++|+ +.+++.+++++....   + .++++++.+|+..
T Consensus       179 ~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---~-~~~v~~~~~d~~~  251 (359)
T 1x19_A          179 IQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG---V-ADRMRGIAVDIYK  251 (359)
T ss_dssp             HHHHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT---C-TTTEEEEECCTTT
T ss_pred             HHHHHHhcC--CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcC---C-CCCEEEEeCcccc
Confidence            345555554  567889999999999999999876    8999999 999999999988722   1 1359999999987


Q ss_pred             CCCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEc
Q psy7830         197 GHAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       197 ~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      .+..  .+|+|++...+++        +++++.+.|||||++++...
T Consensus       252 ~~~~--~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~  296 (359)
T 1x19_A          252 ESYP--EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM  296 (359)
T ss_dssp             SCCC--CCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred             CCCC--CCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            6443  3499999877643        57899999999999987653

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.23  E-value=1.5e-11  Score=115.42  Aligned_cols=104  Identities=21%  Similarity=0.194  Sum_probs=82.7

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC-CCCCeeEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA-EGGPYDVI  207 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~-~~~~fD~I  207 (364)
                      .++.+|||+|||+|..+..+++.    +|+++|+|+.+++.|++++..... .+..++++++.+|+..... ..++||+|
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~-~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISC-GYEDKRVNVFIEDASKFLENVTNTYDVI  155 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSG-GGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhcc-ccCCCcEEEEECChHHHHHhCCCCceEE
Confidence            46689999999999999999876    899999999999999998864100 0123689999999875432 24689999


Q ss_pred             EEccCh----------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         208 FFGAGT----------TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       208 i~~~~~----------~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +++...          ..+++.+.+.|+|||++++...+.
T Consensus       156 i~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~  195 (283)
T 2i7c_A          156 IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESL  195 (283)
T ss_dssp             EEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             EEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCc
Confidence            996532          367889999999999999987653

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.22  E-value=1.1e-10  Score=113.37  Aligned_cols=97  Identities=16%  Similarity=0.175  Sum_probs=80.5

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      ..++.+|||+|||+|..+..+++.    +++++|+ +.+++.+++++....   + .+++++..+|+....+  ..||+|
T Consensus       200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---l-~~~v~~~~~d~~~~~p--~~~D~v  272 (369)
T 3gwz_A          200 FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRG---L-ADRCEILPGDFFETIP--DGADVY  272 (369)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT---C-TTTEEEEECCTTTCCC--SSCSEE
T ss_pred             CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcC---c-CCceEEeccCCCCCCC--CCceEE
Confidence            457789999999999999999876    8999999 999999999987721   1 2589999999984322  279999


Q ss_pred             EEccChH--------HHHHHHHhccCCCcEEEEEEc
Q psy7830         208 FFGAGTT--------EVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       208 i~~~~~~--------~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      ++...++        .+++++.+.|||||+|++...
T Consensus       273 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~  308 (369)
T 3gwz_A          273 LIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDN  308 (369)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred             EhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            9987774        377899999999999998653

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.22  E-value=4.1e-11  Score=115.20  Aligned_cols=99  Identities=18%  Similarity=0.116  Sum_probs=83.8

Q ss_pred             cCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         131 HLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       131 ~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      .+.++.+|||+|||+|.++.. ++.  +|+++|+++.+++.+++|+..+.   + .++++++.+|+....   ++||+|+
T Consensus       192 ~~~~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~---l-~~~v~~~~~D~~~~~---~~fD~Vi  263 (336)
T 2yx1_A          192 KVSLNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNK---L-EHKIIPILSDVREVD---VKGNRVI  263 (336)
T ss_dssp             HCCTTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTT---C-TTTEEEEESCGGGCC---CCEEEEE
T ss_pred             hcCCCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcC---C-CCcEEEEECChHHhc---CCCcEEE
Confidence            356899999999999999999 766  99999999999999999998843   2 147999999998765   6899999


Q ss_pred             EccCh--HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         209 FGAGT--TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       209 ~~~~~--~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ++.+.  ..++..+.+.|+|||.+++.....
T Consensus       264 ~dpP~~~~~~l~~~~~~L~~gG~l~~~~~~~  294 (336)
T 2yx1_A          264 MNLPKFAHKFIDKALDIVEEGGVIHYYTIGK  294 (336)
T ss_dssp             ECCTTTGGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred             ECCcHhHHHHHHHHHHHcCCCCEEEEEEeec
Confidence            98554  357888999999999998866544

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.21  E-value=9.6e-11  Score=113.61  Aligned_cols=97  Identities=14%  Similarity=0.081  Sum_probs=80.1

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--CCCCCeeE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH--AEGGPYDV  206 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~--~~~~~fD~  206 (364)
                      ....+|||||||+|..+..+++.    +++++|+ +.+++.|++++....   + .++++++.+|+....  .+ ++||+
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---~-~~~v~~~~~d~~~~~~~~p-~~~D~  251 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLS---G-SERIHGHGANLLDRDVPFP-TGFDA  251 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCT---T-GGGEEEEECCCCSSSCCCC-CCCSE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcC---c-ccceEEEEccccccCCCCC-CCcCE
Confidence            46789999999999999999875    8999999 999999999987621   1 147999999998752  22 68999


Q ss_pred             EEEccChH--------HHHHHHHhccCCCcEEEEEEc
Q psy7830         207 IFFGAGTT--------EVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       207 Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      |++...++        .+++++.+.|||||+|++...
T Consensus       252 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (363)
T 3dp7_A          252 VWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMET  288 (363)
T ss_dssp             EEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             EEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEee
Confidence            99977764        367899999999999998664

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.21  E-value=5.9e-11  Score=109.87  Aligned_cols=101  Identities=10%  Similarity=0.060  Sum_probs=82.1

Q ss_pred             ccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830         114 VMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL  191 (364)
Q Consensus       114 ~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~  191 (364)
                      ....|.++.++++.+.  +.++.+|||||||+|.++..+++.  +|+++|+|+.+++.+++++..       .++++++.
T Consensus        11 FL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~-------~~~v~~i~   81 (255)
T 3tqs_A           11 FLHDSFVLQKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQ-------QKNITIYQ   81 (255)
T ss_dssp             EECCHHHHHHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTT-------CTTEEEEE
T ss_pred             cccCHHHHHHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhh-------CCCcEEEE
Confidence            3467888999999987  788999999999999999999988  999999999999999998854       25899999


Q ss_pred             cCCCCCCCC----CCCeeEEEEccChHHHHHHHHhcc
Q psy7830         192 KDARWGHAE----GGPYDVIFFGAGTTEVSKTILSQL  224 (364)
Q Consensus       192 ~D~~~~~~~----~~~fD~Ii~~~~~~~l~~~l~~~L  224 (364)
                      +|+......    .++|| |++|.++.--.+.+.++|
T Consensus        82 ~D~~~~~~~~~~~~~~~~-vv~NlPY~is~~il~~ll  117 (255)
T 3tqs_A           82 NDALQFDFSSVKTDKPLR-VVGNLPYNISTPLLFHLF  117 (255)
T ss_dssp             SCTTTCCGGGSCCSSCEE-EEEECCHHHHHHHHHHHH
T ss_pred             cchHhCCHHHhccCCCeE-EEecCCcccCHHHHHHHH
Confidence            999876542    24688 899988864333344444

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.21  E-value=1.9e-11  Score=116.45  Aligned_cols=103  Identities=18%  Similarity=0.230  Sum_probs=82.0

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHh-cCCCCCCCCCEEEEEcCCCCCC-CCCCCeeE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKI-SRPDLLQSKTLEFILKDARWGH-AEGGPYDV  206 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~-~~~~~l~~~~v~~~~~D~~~~~-~~~~~fD~  206 (364)
                      ..+.+|||||||+|..+..+++.    +|+++|+|+.+++.|++++.. +. ..+..++++++.+|+.... ...++||+
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~-~~~~~~~v~~~~~D~~~~l~~~~~~fD~  154 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQ-GAFDDPRAVLVIDDARAYLERTEERYDV  154 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHT-TGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcc-ccccCCceEEEEchHHHHHHhcCCCccE
Confidence            46689999999999999999876    899999999999999998764 11 0011368999999987642 22468999


Q ss_pred             EEEccCh-------------HHHHHHHHhccCCCcEEEEEEcC
Q psy7830         207 IFFGAGT-------------TEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       207 Ii~~~~~-------------~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      |+++...             ..+++.+.+.|||||++++..+.
T Consensus       155 Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  197 (314)
T 1uir_A          155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM  197 (314)
T ss_dssp             EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             EEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccC
Confidence            9987543             35678999999999999997654

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.21  E-value=3.4e-11  Score=106.13  Aligned_cols=89  Identities=13%  Similarity=0.081  Sum_probs=70.2

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC-------
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH-------  198 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~-------  198 (364)
                      ++++.+|||+|||+|.++..+++.      +|+|+|+++..         .       .++++++++|+....       
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------~-------~~~v~~~~~d~~~~~~~~~~~~   83 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------P-------IPNVYFIQGEIGKDNMNNIKNI   83 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------C-------CTTCEEEECCTTTTSSCCC---
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------C-------CCCceEEEccccchhhhhhccc
Confidence            578899999999999999988753      79999999831         1       247889999987654       


Q ss_pred             ------------------CCCCCeeEEEEccChH-----------------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         199 ------------------AEGGPYDVIFFGAGTT-----------------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       199 ------------------~~~~~fD~Ii~~~~~~-----------------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                                        ....+||+|+++..++                 .++..+.+.|||||.+++.+..
T Consensus        84 ~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  156 (201)
T 2plw_A           84 NYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL  156 (201)
T ss_dssp             --------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence                              2346899999976532                 1567789999999999987654

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.21  E-value=1.5e-10  Score=102.17  Aligned_cols=105  Identities=19%  Similarity=0.227  Sum_probs=77.6

Q ss_pred             ChHHHHHHHHHHHhcc-CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830         116 EPPSYIARCLEQLVDH-LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL  191 (364)
Q Consensus       116 s~P~~~a~~l~~L~~~-l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~  191 (364)
                      ..+.+...++..+... ..++.+|||+|||+|.++..++..   +|+++|+++.+++.+++++.          +++++.
T Consensus        32 ~~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~----------~~~~~~  101 (200)
T 1ne2_A           32 TDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG----------GVNFMV  101 (200)
T ss_dssp             CCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT----------TSEEEE
T ss_pred             CCHHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC----------CCEEEE
Confidence            3344555666555321 347889999999999999999876   79999999999999998852          688999


Q ss_pred             cCCCCCCCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEcC
Q psy7830         192 KDARWGHAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       192 ~D~~~~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +|+...+   ++||+|+++.++++        ++..+.+.+   |.+++....
T Consensus       102 ~d~~~~~---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~---g~~~~~~~~  148 (200)
T 1ne2_A          102 ADVSEIS---GKYDTWIMNPPFGSVVKHSDRAFIDKAFETS---MWIYSIGNA  148 (200)
T ss_dssp             CCGGGCC---CCEEEEEECCCC-------CHHHHHHHHHHE---EEEEEEEEG
T ss_pred             CcHHHCC---CCeeEEEECCCchhccCchhHHHHHHHHHhc---CcEEEEEcC
Confidence            9988753   68999999988654        445666666   445554433

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.21  E-value=3.3e-11  Score=102.80  Aligned_cols=98  Identities=17%  Similarity=0.120  Sum_probs=76.4

Q ss_pred             HHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830         123 RCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG  197 (364)
Q Consensus       123 ~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~  197 (364)
                      .+++.+. ++.++.+|||+|||+|.++..+++.     +++++|+++ +++.               .++++..+|+...
T Consensus        12 ~~~~~~~-~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~---------------~~~~~~~~d~~~~   74 (180)
T 1ej0_A           12 EIQQSDK-LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI---------------VGVDFLQGDFRDE   74 (180)
T ss_dssp             HHHHHHC-CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC---------------TTEEEEESCTTSH
T ss_pred             HHHHHhC-CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc---------------CcEEEEEcccccc
Confidence            3344332 3578899999999999999888764     899999998 6421               4789999999775


Q ss_pred             C--------CCCCCeeEEEEccCh-----------------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         198 H--------AEGGPYDVIFFGAGT-----------------TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       198 ~--------~~~~~fD~Ii~~~~~-----------------~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      .        ...++||+|+++.++                 ..+++.+.++|+|||.+++.....
T Consensus        75 ~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  139 (180)
T 1ej0_A           75 LVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG  139 (180)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred             hhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            3        345689999997664                 356788999999999999977654

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.20  E-value=9.3e-11  Score=113.09  Aligned_cols=105  Identities=21%  Similarity=0.193  Sum_probs=83.4

Q ss_pred             HHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC
Q psy7830         123 RCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH  198 (364)
Q Consensus       123 ~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~  198 (364)
                      .+++.+.  +.++.+|||+|||+|.++..+++.    +++++|+ +.+++.+++++....   + .++++++.+|+.+..
T Consensus       174 ~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~---~-~~~v~~~~~d~~~~~  246 (360)
T 1tw3_A          174 APAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG---L-SDRVDVVEGDFFEPL  246 (360)
T ss_dssp             HHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT---C-TTTEEEEECCTTSCC
T ss_pred             HHHHhCC--CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcC---C-CCceEEEeCCCCCCC
Confidence            3444443  467889999999999999998876    8899999 999999999987722   1 138999999987633


Q ss_pred             CCCCCeeEEEEccChH--------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         199 AEGGPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       199 ~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +  ..||+|++...++        .+++++.+.|||||++++....
T Consensus       247 ~--~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          247 P--RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             S--SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             C--CCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            2  2499999987764        3678999999999999987654

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.20  E-value=3.1e-12  Score=126.06  Aligned_cols=106  Identities=16%  Similarity=0.113  Sum_probs=77.7

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA  199 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~  199 (364)
                      ..+++.+.  +.++.+|||+|||+|.++..+++.  +|+|+|+|+.+++.|+++-       +......+...+....+.
T Consensus        97 ~~l~~~~~--~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~~~~~~~~l~~  167 (416)
T 4e2x_A           97 RDFLATEL--TGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKG-------IRVRTDFFEKATADDVRR  167 (416)
T ss_dssp             HHHHHTTT--CSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTTT-------CCEECSCCSHHHHHHHHH
T ss_pred             HHHHHHhC--CCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHcC-------CCcceeeechhhHhhccc
Confidence            34444443  467899999999999999999988  9999999999999988751       100011112223322333


Q ss_pred             CCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830         200 EGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       200 ~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      .+++||+|+++..+++      +++++.++|||||++++.+..
T Consensus       168 ~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  210 (416)
T 4e2x_A          168 TEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPY  210 (416)
T ss_dssp             HHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            3578999999998865      578999999999999998754

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.20  E-value=5.8e-11  Score=114.20  Aligned_cols=98  Identities=23%  Similarity=0.277  Sum_probs=80.2

Q ss_pred             CC-CCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC-CCCCeeE
Q psy7830         133 QN-GSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA-EGGPYDV  206 (364)
Q Consensus       133 ~~-g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~-~~~~fD~  206 (364)
                      .+ +.+|||+|||+|.++..+++.    +++++|+ +.+++.+++++....   + .++++++.+|+..... ..+.||+
T Consensus       177 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---~-~~~v~~~~~d~~~~~~~~~~~~D~  251 (352)
T 3mcz_A          177 FARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHD---L-GGRVEFFEKNLLDARNFEGGAADV  251 (352)
T ss_dssp             GTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT---C-GGGEEEEECCTTCGGGGTTCCEEE
T ss_pred             cCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcC---C-CCceEEEeCCcccCcccCCCCccE
Confidence            45 789999999999999999875    8999999 899999999887621   1 1479999999987641 2356999


Q ss_pred             EEEccChH--------HHHHHHHhccCCCcEEEEEEc
Q psy7830         207 IFFGAGTT--------EVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       207 Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      |++...++        .+++++.+.|||||+|++...
T Consensus       252 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (352)
T 3mcz_A          252 VMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTM  288 (352)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            99987775        367889999999999998653

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.19  E-value=1.7e-11  Score=113.89  Aligned_cols=99  Identities=12%  Similarity=-0.006  Sum_probs=81.4

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHh--cCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKI--SRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~--~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      ..+.+|||||||+|+++..+++.  +|+++|+|+.+++.|++++..  +.   +..++++++.+|+....   ++||+|+
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~---~~~~rv~~~~~D~~~~~---~~fD~Ii  144 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEV---KNNKNFTHAKQLLDLDI---KKYDLIF  144 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHH---HTCTTEEEESSGGGSCC---CCEEEEE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccc---cCCCeEEEEechHHHHH---hhCCEEE
Confidence            35679999999999999988876  999999999999999987643  11   22368999999998765   6899999


Q ss_pred             EccChH-HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         209 FGAGTT-EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       209 ~~~~~~-~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ++..-. .+++.+.+.|+|||++++..+..
T Consensus       145 ~d~~dp~~~~~~~~~~L~pgG~lv~~~~~~  174 (262)
T 2cmg_A          145 CLQEPDIHRIDGLKRMLKEDGVFISVAKHP  174 (262)
T ss_dssp             ESSCCCHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred             ECCCChHHHHHHHHHhcCCCcEEEEEcCCc
Confidence            986443 46889999999999999986554

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.19  E-value=1e-10  Score=111.69  Aligned_cols=97  Identities=12%  Similarity=0.032  Sum_probs=79.7

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      .++.+|||+|||+|..+..+++.    +++++|+ +.+++.+++++....   + .+++++..+|+....+  .+||+|+
T Consensus       168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---~-~~~v~~~~~d~~~~~p--~~~D~v~  240 (332)
T 3i53_A          168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTG---L-SGRAQVVVGSFFDPLP--AGAGGYV  240 (332)
T ss_dssp             GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT---C-TTTEEEEECCTTSCCC--CSCSEEE
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcC---c-CcCeEEecCCCCCCCC--CCCcEEE
Confidence            34689999999999999999875    8999999 999999999987721   1 2589999999974322  2799999


Q ss_pred             EccChH--------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         209 FGAGTT--------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       209 ~~~~~~--------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +...++        .+++++++.|||||+|++....
T Consensus       241 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  276 (332)
T 3i53_A          241 LSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAV  276 (332)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             EehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeec
Confidence            987775        3678999999999999987654

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.18  E-value=4.8e-11  Score=122.59  Aligned_cols=105  Identities=20%  Similarity=0.159  Sum_probs=81.8

Q ss_pred             HHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--CC
Q psy7830         125 LEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH--AE  200 (364)
Q Consensus       125 l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~--~~  200 (364)
                      .+.+...+..+.+|||||||.|.++..||++  +|+|||.++.+++.|+..+...     +.-++++.+++++++.  ..
T Consensus        57 ~~~~~~~~~~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~-----~~~~~~~~~~~~~~~~~~~~  131 (569)
T 4azs_A           57 YDNLSRALGRPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEEN-----PDFAAEFRVGRIEEVIAALE  131 (569)
T ss_dssp             HHHHHHHHTSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTS-----TTSEEEEEECCHHHHHHHCC
T ss_pred             HHHHHhhcCCCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhc-----CCCceEEEECCHHHHhhhcc
Confidence            3334333456789999999999999999999  9999999999999999988762     2247999999987652  23


Q ss_pred             CCCeeEEEEccChHHHH--------HHHHhccCCCcEEEEEE
Q psy7830         201 GGPYDVIFFGAGTTEVS--------KTILSQLKPNGRIVAPV  234 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~~l~--------~~l~~~LkpGG~Lvi~~  234 (364)
                      +++||+|++..+++|+.        ..+.+.|+++|..++..
T Consensus       132 ~~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~  173 (569)
T 4azs_A          132 EGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILE  173 (569)
T ss_dssp             TTSCSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEE
T ss_pred             CCCccEEEECcchhcCCCHHHHHHHHHHHHHhccccceeeEE
Confidence            56899999999999864        34566677777655433

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.18  E-value=1.2e-10  Score=111.13  Aligned_cols=105  Identities=13%  Similarity=0.102  Sum_probs=83.0

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG  197 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~  197 (364)
                      ..+++.+.  ..+ .+|||+|||+|..+..+++.    +++++|+ +.+++.+++++....   + .++++++.+|+.+.
T Consensus       158 ~~~~~~~~--~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---~-~~~v~~~~~d~~~~  229 (334)
T 2ip2_A          158 HEIPRLLD--FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLL---A-GERVSLVGGDMLQE  229 (334)
T ss_dssp             HHHHHHSC--CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHH---H-TTSEEEEESCTTTC
T ss_pred             HHHHHhCC--CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcC---C-CCcEEEecCCCCCC
Confidence            34444432  345 89999999999999998875    8999999 999999999876511   1 24799999998763


Q ss_pred             CCCCCCeeEEEEccChH--------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         198 HAEGGPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       198 ~~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                       . .++||+|++...++        .+++++.+.|||||++++....
T Consensus       230 -~-~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  274 (334)
T 2ip2_A          230 -V-PSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERT  274 (334)
T ss_dssp             -C-CSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             -C-CCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence             3 25799999988775        4678999999999999987643

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.17  E-value=2.7e-11  Score=114.07  Aligned_cols=104  Identities=13%  Similarity=0.074  Sum_probs=73.3

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEE-EcCCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFI-LKDARWG  197 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~-~~D~~~~  197 (364)
                      ..+++.+. ...+|.+|||+|||||+++..+++.   +|+|+|+++.|++.+.++-          +++... ..|+...
T Consensus        74 ~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~----------~rv~~~~~~ni~~l  142 (291)
T 3hp7_A           74 EKALAVFN-LSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD----------DRVRSMEQYNFRYA  142 (291)
T ss_dssp             HHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC----------TTEEEECSCCGGGC
T ss_pred             HHHHHhcC-CCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----------cccceecccCceec
Confidence            44444443 1236789999999999999988876   8999999999998854432          233222 2333322


Q ss_pred             CC---CCCCeeEEEEccChH---HHHHHHHhccCCCcEEEEEEcC
Q psy7830         198 HA---EGGPYDVIFFGAGTT---EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       198 ~~---~~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ..   +..+||+|+++..+.   .+++++.++|||||++++.+.+
T Consensus       143 ~~~~l~~~~fD~v~~d~sf~sl~~vL~e~~rvLkpGG~lv~lvkP  187 (291)
T 3hp7_A          143 EPVDFTEGLPSFASIDVSFISLNLILPALAKILVDGGQVVALVKP  187 (291)
T ss_dssp             CGGGCTTCCCSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEEECG
T ss_pred             chhhCCCCCCCEEEEEeeHhhHHHHHHHHHHHcCcCCEEEEEECc
Confidence            21   123599999887754   4789999999999999997544

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.17  E-value=3.4e-10  Score=111.12  Aligned_cols=120  Identities=9%  Similarity=0.001  Sum_probs=92.9

Q ss_pred             CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--e---------------------------------
Q psy7830         112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--S---------------------------------  156 (364)
Q Consensus       112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~---------------------------------  156 (364)
                      +..+..+.+.+.++....  ..++..|||++||+|.+++.++..  .                                 
T Consensus       181 ~~Apl~e~lAa~ll~l~~--~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~  258 (393)
T 3k0b_A          181 GSAPIKETMAAALVLLTS--WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLA  258 (393)
T ss_dssp             CSCSCCHHHHHHHHHHSC--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHC
T ss_pred             CCCCCcHHHHHHHHHHhC--CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhh
Confidence            455667778788777665  578899999999999999887754  2                                 


Q ss_pred             -------EEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChH----------HHHHH
Q psy7830         157 -------SVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTT----------EVSKT  219 (364)
Q Consensus       157 -------V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~----------~l~~~  219 (364)
                             |+|+|+|+.+++.|++|+..+.   + ..++++.++|+.+.... .+||+|++|.++.          .+...
T Consensus       259 ~~~~~~~V~GvDid~~al~~Ar~Na~~~g---l-~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~  333 (393)
T 3k0b_A          259 NYDQPLNIIGGDIDARLIEIAKQNAVEAG---L-GDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYRE  333 (393)
T ss_dssp             CTTCCCCEEEEESCHHHHHHHHHHHHHTT---C-TTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHH
T ss_pred             cccCCceEEEEECCHHHHHHHHHHHHHcC---C-CCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHH
Confidence                   9999999999999999998832   1 13699999999887653 5899999998852          23344


Q ss_pred             HHhccCC--CcEEEEEEcCCC
Q psy7830         220 ILSQLKP--NGRIVAPVGNVW  238 (364)
Q Consensus       220 l~~~Lkp--GG~Lvi~~~~~~  238 (364)
                      +.+.||+  ||.+++.+.+..
T Consensus       334 lg~~lk~~~g~~~~iit~~~~  354 (393)
T 3k0b_A          334 MGIVYKRMPTWSVYVLTSYEL  354 (393)
T ss_dssp             HHHHHHTCTTCEEEEEECCTT
T ss_pred             HHHHHhcCCCCEEEEEECCHH
Confidence            4455554  999998887765

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.16  E-value=1.6e-10  Score=108.09  Aligned_cols=102  Identities=19%  Similarity=0.225  Sum_probs=74.7

Q ss_pred             CCCEEEEECCCccH----HHHHHHc-------c-eEEEEeCCHHHHHHHHHHHHh-----c-------------C---CC
Q psy7830         134 NGSRVLDIGSGQGY----MATAKEW-------L-SSVRQLLLPETLNNSLKNIKI-----S-------------R---PD  180 (364)
Q Consensus       134 ~g~~VLDiGcGsG~----~a~~la~-------~-~V~~vDis~~~l~~a~~~~~~-----~-------------~---~~  180 (364)
                      ++.+|||+|||||.    +++.+++       . +|+|+|+|+.|++.|++++..     +             .   ..
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45799999999998    5555543       2 799999999999999987521     0             0   00


Q ss_pred             --CCC---CCCEEEEEcCCCCCCCC-CCCeeEEEEccChH--------HHHHHHHhccCCCcEEEEEEc
Q psy7830         181 --LLQ---SKTLEFILKDARWGHAE-GGPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       181 --~l~---~~~v~~~~~D~~~~~~~-~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                        .+.   ..+|.|.++|+.+.+.. .++||+|+|..++.        .++..+.+.|+|||.|++...
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~s  253 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHS  253 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence              000   03699999999874332 46899999987763        467899999999999997443

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.15  E-value=6.1e-10  Score=108.92  Aligned_cols=120  Identities=8%  Similarity=-0.074  Sum_probs=92.3

Q ss_pred             CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--e---------------------------------
Q psy7830         112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--S---------------------------------  156 (364)
Q Consensus       112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~---------------------------------  156 (364)
                      +..+..+.+.+.++....  ..++..|||.+||+|.+.+.++..  .                                 
T Consensus       174 ~~Apl~e~LAaall~l~~--~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~  251 (384)
T 3ldg_A          174 GGAPIKENMAAAIILLSN--WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQA  251 (384)
T ss_dssp             --CCCCHHHHHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHC
T ss_pred             CCCCCcHHHHHHHHHHhC--CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhh
Confidence            344556777777777665  578899999999999999887754  2                                 


Q ss_pred             -------EEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChH----------HHHHH
Q psy7830         157 -------SVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTT----------EVSKT  219 (364)
Q Consensus       157 -------V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~----------~l~~~  219 (364)
                             |+|+|+|+.+++.|++|+....   + .+++++.++|+.+.... .+||+|++|.++.          .+...
T Consensus       252 ~~~~~~~v~GvDid~~al~~Ar~Na~~~g---l-~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~  326 (384)
T 3ldg_A          252 DYDIQLDISGFDFDGRMVEIARKNAREVG---L-EDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNE  326 (384)
T ss_dssp             CTTCCCCEEEEESCHHHHHHHHHHHHHTT---C-TTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHH
T ss_pred             hccCCceEEEEECCHHHHHHHHHHHHHcC---C-CCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHH
Confidence                   9999999999999999998822   1 13699999999887653 5899999998852          23444


Q ss_pred             HHhccCC--CcEEEEEEcCCC
Q psy7830         220 ILSQLKP--NGRIVAPVGNVW  238 (364)
Q Consensus       220 l~~~Lkp--GG~Lvi~~~~~~  238 (364)
                      +.+.||+  ||.+++.+.+..
T Consensus       327 lg~~lk~~~g~~~~iit~~~~  347 (384)
T 3ldg_A          327 MGETFAPLKTWSQFILTNDTD  347 (384)
T ss_dssp             HHHHHTTCTTSEEEEEESCTT
T ss_pred             HHHHHhhCCCcEEEEEECCHH
Confidence            5555555  999999888765

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.14  E-value=1.9e-10  Score=114.68  Aligned_cols=119  Identities=15%  Similarity=0.115  Sum_probs=93.9

Q ss_pred             CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHc---------------c--eEEEEeCCHHHHHHHHHHH
Q psy7830         112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEW---------------L--SSVRQLLLPETLNNSLKNI  174 (364)
Q Consensus       112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~---------------~--~V~~vDis~~~l~~a~~~~  174 (364)
                      |++.+.+.++..+++.+.  ..++.+|||+|||+|.+...+++               .  +++|+|+++.+++.|+.|+
T Consensus       151 G~fyTP~~v~~~mv~~l~--~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl  228 (445)
T 2okc_A          151 GQYFTPRPLIQAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNL  228 (445)
T ss_dssp             GGGCCCHHHHHHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred             CcccCcHHHHHHHHHHhC--CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHH
Confidence            566666777788888776  57788999999999999987764               2  7999999999999999998


Q ss_pred             HhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChH-----------------------HHHHHHHhccCCCcEEE
Q psy7830         175 KISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTT-----------------------EVSKTILSQLKPNGRIV  231 (364)
Q Consensus       175 ~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~-----------------------~l~~~l~~~LkpGG~Lv  231 (364)
                      ....   ++..++.+.++|....... .+||+|++|.++.                       .++..+.+.|||||+++
T Consensus       229 ~l~g---~~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a  304 (445)
T 2okc_A          229 YLHG---IGTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAA  304 (445)
T ss_dssp             HHTT---CCSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred             HHhC---CCcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEE
Confidence            7622   2112677899998765443 4899999997753                       35788899999999999


Q ss_pred             EEEcC
Q psy7830         232 APVGN  236 (364)
Q Consensus       232 i~~~~  236 (364)
                      +.++.
T Consensus       305 ~V~p~  309 (445)
T 2okc_A          305 VVLPD  309 (445)
T ss_dssp             EEEEH
T ss_pred             EEECC
Confidence            88854

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.14  E-value=2.9e-11  Score=114.81  Aligned_cols=98  Identities=15%  Similarity=0.091  Sum_probs=73.4

Q ss_pred             cCCCCCEEEEECCCccHHHHHHHcc-eEEEEeC----CHHHHHHHHHHHHhcCCCCCCCCCEEEEEc-CCCCCCCCCCCe
Q psy7830         131 HLQNGSRVLDIGSGQGYMATAKEWL-SSVRQLL----LPETLNNSLKNIKISRPDLLQSKTLEFILK-DARWGHAEGGPY  204 (364)
Q Consensus       131 ~l~~g~~VLDiGcGsG~~a~~la~~-~V~~vDi----s~~~l~~a~~~~~~~~~~~l~~~~v~~~~~-D~~~~~~~~~~f  204 (364)
                      .++++.+|||+|||+|.++..+++. +|+++|+    ++.+++.+.  ...     .+.+++.++.+ |+...+  .++|
T Consensus        79 ~~~~g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~--~~~-----~~~~~v~~~~~~D~~~l~--~~~f  149 (305)
T 2p41_A           79 LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIP--MST-----YGWNLVRLQSGVDVFFIP--PERC  149 (305)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCC--CCS-----TTGGGEEEECSCCTTTSC--CCCC
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHH--hhh-----cCCCCeEEEeccccccCC--cCCC
Confidence            3578899999999999999999998 8999999    554432110  111     22357999999 887654  3589


Q ss_pred             eEEEEccChH------------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         205 DVIFFGAGTT------------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       205 D~Ii~~~~~~------------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      |+|+++.++.            .++..+.++|||||.+++.+...
T Consensus       150 D~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          150 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             CEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            9999986631            24567789999999999987655

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.12  E-value=1.2e-10  Score=108.60  Aligned_cols=90  Identities=12%  Similarity=0.024  Sum_probs=77.1

Q ss_pred             ccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830         114 VMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL  191 (364)
Q Consensus       114 ~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~  191 (364)
                      ....|.++.++++.+.  +.++ +|||||||+|.++..+++.  +|+++|+|+.+++.+++++..        .+++++.
T Consensus        29 fL~d~~i~~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~--------~~v~vi~   97 (271)
T 3fut_A           29 FLVSEAHLRRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSG--------LPVRLVF   97 (271)
T ss_dssp             EECCHHHHHHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTT--------SSEEEEE
T ss_pred             ccCCHHHHHHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCC--------CCEEEEE
Confidence            3456778899999987  6788 9999999999999999988  999999999999999998743        4899999


Q ss_pred             cCCCCCCCCC-CCeeEEEEccChH
Q psy7830         192 KDARWGHAEG-GPYDVIFFGAGTT  214 (364)
Q Consensus       192 ~D~~~~~~~~-~~fD~Ii~~~~~~  214 (364)
                      +|+....... ..+|.|++|.++.
T Consensus        98 ~D~l~~~~~~~~~~~~iv~NlPy~  121 (271)
T 3fut_A           98 QDALLYPWEEVPQGSLLVANLPYH  121 (271)
T ss_dssp             SCGGGSCGGGSCTTEEEEEEECSS
T ss_pred             CChhhCChhhccCccEEEecCccc
Confidence            9998765432 3689999998874

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.11  E-value=3.6e-10  Score=104.02  Aligned_cols=94  Identities=12%  Similarity=0.052  Sum_probs=79.1

Q ss_pred             cCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeE
Q psy7830         131 HLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDV  206 (364)
Q Consensus       131 ~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~  206 (364)
                      .+.+..+|||||||+|.++..++..    +|+++|+|+.+++.+++|+..+     +. +.++...|....++ .++||+
T Consensus       129 ~i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~-----g~-~~~~~v~D~~~~~p-~~~~Dv  201 (281)
T 3lcv_B          129 HLPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRL-----NV-PHRTNVADLLEDRL-DEPADV  201 (281)
T ss_dssp             GSCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHT-----TC-CEEEEECCTTTSCC-CSCCSE
T ss_pred             ccCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc-----CC-CceEEEeeecccCC-CCCcch
Confidence            3456789999999999999888766    9999999999999999999883     22 58899999876655 468999


Q ss_pred             EEEccChHHHH-------HHHHhccCCCcEEE
Q psy7830         207 IFFGAGTTEVS-------KTILSQLKPNGRIV  231 (364)
Q Consensus       207 Ii~~~~~~~l~-------~~l~~~LkpGG~Lv  231 (364)
                      ++++..++++-       -.+...|+++|.+|
T Consensus       202 aL~lkti~~Le~q~kg~g~~ll~aL~~~~vvV  233 (281)
T 3lcv_B          202 TLLLKTLPCLETQQRGSGWEVIDIVNSPNIVV  233 (281)
T ss_dssp             EEETTCHHHHHHHSTTHHHHHHHHSSCSEEEE
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHhCCCCEEE
Confidence            99999998753       27889999999866

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.11  E-value=6.4e-10  Score=108.88  Aligned_cols=120  Identities=13%  Similarity=0.074  Sum_probs=91.7

Q ss_pred             CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc------------------------------------
Q psy7830         112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL------------------------------------  155 (364)
Q Consensus       112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~------------------------------------  155 (364)
                      +..+..+.+.+.++....  ..++.+|||+|||+|.+++.++..                                    
T Consensus       175 ~~Apl~e~lAa~ll~~~~--~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~  252 (385)
T 3ldu_A          175 NKAPIRETLAAGLIYLTP--WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKI  252 (385)
T ss_dssp             -CCCCCHHHHHHHHHTSC--CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHS
T ss_pred             CCCCCcHHHHHHHHHhhC--CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHh
Confidence            444556677777776655  578899999999999999887643                                    


Q ss_pred             ------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChH----------HHHHH
Q psy7830         156 ------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTT----------EVSKT  219 (364)
Q Consensus       156 ------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~----------~l~~~  219 (364)
                            +|+|+|+|+.+++.|++|+..+.   + .+++++.++|+.+.... .+||+|++|.++.          .+...
T Consensus       253 ~~~~~~~V~GvDid~~ai~~Ar~Na~~~g---l-~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~  327 (385)
T 3ldu_A          253 DNESKFKIYGYDIDEESIDIARENAEIAG---V-DEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKE  327 (385)
T ss_dssp             CCSCCCCEEEEESCHHHHHHHHHHHHHHT---C-GGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHH
T ss_pred             hccCCceEEEEECCHHHHHHHHHHHHHcC---C-CCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHH
Confidence                  39999999999999999998832   2 13799999999887653 5899999998862          23345


Q ss_pred             HHhccCC--CcEEEEEEcCCC
Q psy7830         220 ILSQLKP--NGRIVAPVGNVW  238 (364)
Q Consensus       220 l~~~Lkp--GG~Lvi~~~~~~  238 (364)
                      +.+.||+  ||.+++.+.+..
T Consensus       328 lg~~lk~~~g~~~~iit~~~~  348 (385)
T 3ldu_A          328 LGYAFRKLKNWSYYLITSYED  348 (385)
T ss_dssp             HHHHHHTSBSCEEEEEESCTT
T ss_pred             HHHHHhhCCCCEEEEEECCHH
Confidence            5555655  899888887765

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.10  E-value=3.1e-10  Score=109.19  Aligned_cols=97  Identities=14%  Similarity=0.117  Sum_probs=79.6

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc---------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCC
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL---------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGP  203 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~---------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~  203 (364)
                      .++.+|||+|||+|.++..+++.         +++|+|+++.+++.|+.|+....     . ++.+.++|...... ..+
T Consensus       129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g-----~-~~~i~~~D~l~~~~-~~~  201 (344)
T 2f8l_A          129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-----Q-KMTLLHQDGLANLL-VDP  201 (344)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-----C-CCEEEESCTTSCCC-CCC
T ss_pred             CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC-----C-CceEEECCCCCccc-cCC
Confidence            46789999999999999887643         58999999999999999987622     2 68899999876433 468


Q ss_pred             eeEEEEccChH------------------------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         204 YDVIFFGAGTT------------------------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       204 fD~Ii~~~~~~------------------------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ||+|++|.++.                        .++..+.+.|+|||++++.++.
T Consensus       202 fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~  258 (344)
T 2f8l_A          202 VDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD  258 (344)
T ss_dssp             EEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred             ccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECc
Confidence            99999998731                        3578889999999999998854

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.09  E-value=3.7e-11  Score=111.88  Aligned_cols=101  Identities=15%  Similarity=0.025  Sum_probs=73.5

Q ss_pred             cCCCCCEEEEECCCccHHHHHHHcc-eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEE--EcCCCCCCCCCCCeeEE
Q psy7830         131 HLQNGSRVLDIGSGQGYMATAKEWL-SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFI--LKDARWGHAEGGPYDVI  207 (364)
Q Consensus       131 ~l~~g~~VLDiGcGsG~~a~~la~~-~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~--~~D~~~~~~~~~~fD~I  207 (364)
                      .++++.+|||+|||+|.++..+++. +|+|+|+++ ++..++++.....  ..+ .++.++  ++|+..++  +++||+|
T Consensus        71 ~~~~g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~-m~~~a~~~~~~~~--~~~-~~v~~~~~~~D~~~l~--~~~fD~V  144 (265)
T 2oxt_A           71 YVELTGRVVDLGCGRGGWSYYAASRPHVMDVRAYT-LGVGGHEVPRITE--SYG-WNIVKFKSRVDIHTLP--VERTDVI  144 (265)
T ss_dssp             SCCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEEC-CCCSSCCCCCCCC--BTT-GGGEEEECSCCTTTSC--CCCCSEE
T ss_pred             CCCCCCEEEEeCcCCCHHHHHHHHcCcEEEEECch-hhhhhhhhhhhhh--ccC-CCeEEEecccCHhHCC--CCCCcEE
Confidence            3678999999999999999999988 999999998 5332221110000  011 178888  89998764  4689999


Q ss_pred             EEccCh-------H-----HHHHHHHhccCCCc--EEEEEEcCC
Q psy7830         208 FFGAGT-------T-----EVSKTILSQLKPNG--RIVAPVGNV  237 (364)
Q Consensus       208 i~~~~~-------~-----~l~~~l~~~LkpGG--~Lvi~~~~~  237 (364)
                      +++...       .     .+++.+.++|||||  .+++.+...
T Consensus       145 ~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~  188 (265)
T 2oxt_A          145 MCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCP  188 (265)
T ss_dssp             EECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCT
T ss_pred             EEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCC
Confidence            997651       1     15677889999999  999877553

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.09  E-value=1.3e-09  Score=99.28  Aligned_cols=95  Identities=16%  Similarity=0.061  Sum_probs=78.7

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc-eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEcc
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL-SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGA  211 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~-~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~  211 (364)
                      .+..+|||+|||+|.++..+... +|+++|+|+.+++.+++++..+.      .+..+..+|....++. ++||+|+++.
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar~~~~~~g------~~~~~~v~D~~~~~~~-~~~DvvLllk  176 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITPFAREKD------WDFTFALQDVLCAPPA-EAGDLALIFK  176 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHHHHHHHTT------CEEEEEECCTTTSCCC-CBCSEEEEES
T ss_pred             CCCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHHHHHHhcC------CCceEEEeecccCCCC-CCcchHHHHH
Confidence            56789999999999999988755 99999999999999999987732      5889999998876654 5899999998


Q ss_pred             ChHHHH-------HHHHhccCCCcEEEEEEc
Q psy7830         212 GTTEVS-------KTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       212 ~~~~l~-------~~l~~~LkpGG~Lvi~~~  235 (364)
                      .++++-       -.+...|+++|++| +.+
T Consensus       177 ~lh~LE~q~~~~~~~ll~aL~~~~vvV-sfP  206 (253)
T 3frh_A          177 LLPLLEREQAGSAMALLQSLNTPRMAV-SFP  206 (253)
T ss_dssp             CHHHHHHHSTTHHHHHHHHCBCSEEEE-EEE
T ss_pred             HHHHhhhhchhhHHHHHHHhcCCCEEE-EcC
Confidence            887642       37788999996654 454

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.09  E-value=3e-10  Score=105.88  Aligned_cols=112  Identities=15%  Similarity=0.111  Sum_probs=79.0

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCc--cHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQ--GYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK  192 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGs--G~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~  192 (364)
                      ...+++.+|.. -....+|||||||+  +..+..+++.     +|+++|+|+.|++.|++++...     ...+++++++
T Consensus        65 fl~rav~~l~~-~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~-----~~~~~~~v~a  138 (277)
T 3giw_A           65 WMNRAVAHLAK-EAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAST-----PEGRTAYVEA  138 (277)
T ss_dssp             HHHHHHHHHHH-TSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCC-----SSSEEEEEEC
T ss_pred             HHHHHHHHhcc-ccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccC-----CCCcEEEEEe
Confidence            44566666651 12336899999997  3333333332     9999999999999999988651     1247999999


Q ss_pred             CCCCCCC----C--CCCee-----EEEEccChHH---------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         193 DARWGHA----E--GGPYD-----VIFFGAGTTE---------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       193 D~~~~~~----~--~~~fD-----~Ii~~~~~~~---------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      |+.+...    .  .+.||     .|+++..+++         +++.+.+.|+|||+|+++....
T Consensus       139 D~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~  203 (277)
T 3giw_A          139 DMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTA  203 (277)
T ss_dssp             CTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred             cccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccC
Confidence            9976410    0  13455     5788888865         5678889999999999987654

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=99.08  E-value=2.7e-10  Score=110.24  Aligned_cols=106  Identities=22%  Similarity=0.224  Sum_probs=84.9

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHh-cCCCCCCCCCEEEEEcCCCCCCC-CCCCee
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKI-SRPDLLQSKTLEFILKDARWGHA-EGGPYD  205 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~-~~~~~l~~~~v~~~~~D~~~~~~-~~~~fD  205 (364)
                      +++|++|||+|+|+|..|.+++..    .|+++|+++..++..++|+++ +........++.+...|+..... ..+.||
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD  225 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD  225 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence            789999999999999999999887    799999999999999999987 22111122478999999876432 246899


Q ss_pred             EEEEccChHH------------------------------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         206 VIFFGAGTTE------------------------------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       206 ~Ii~~~~~~~------------------------------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      .|+++.+|..                              ++....++|||||+||.++-+-
T Consensus       226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl  287 (359)
T 4fzv_A          226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL  287 (359)
T ss_dssp             EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence            9999888731                              4567788999999999988663

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.07  E-value=3.3e-11  Score=112.84  Aligned_cols=99  Identities=16%  Similarity=0.076  Sum_probs=72.9

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc-eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEE--EcCCCCCCCCCCCeeEEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL-SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFI--LKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~-~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~--~~D~~~~~~~~~~fD~Ii  208 (364)
                      ++++.+|||+|||+|.++..+++. +|+|+|+++ |+..++++.....  ..+ .++.++  ++|+..++  +++||+|+
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~-m~~~a~~~~~~~~--~~~-~~v~~~~~~~D~~~l~--~~~fD~Vv  153 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQPNVREVKAYT-LGTSGHEKPRLVE--TFG-WNLITFKSKVDVTKME--PFQADTVL  153 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTSTTEEEEEEEC-CCCTTSCCCCCCC--CTT-GGGEEEECSCCGGGCC--CCCCSEEE
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHcCCEEEEECch-hhhhhhhchhhhh--hcC-CCeEEEeccCcHhhCC--CCCcCEEE
Confidence            568999999999999999999998 999999998 5433322110000  011 178899  89988764  46899999


Q ss_pred             EccC----h---H-----HHHHHHHhccCCCc--EEEEEEcC
Q psy7830         209 FGAG----T---T-----EVSKTILSQLKPNG--RIVAPVGN  236 (364)
Q Consensus       209 ~~~~----~---~-----~l~~~l~~~LkpGG--~Lvi~~~~  236 (364)
                      ++..    .   .     .+++.+.++|||||  .+++.+..
T Consensus       154 sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          154 CDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             ECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             ECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence            9865    1   1     14677889999999  99987655

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.07  E-value=9.3e-10  Score=100.94  Aligned_cols=91  Identities=13%  Similarity=0.120  Sum_probs=73.9

Q ss_pred             ccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830         114 VMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL  191 (364)
Q Consensus       114 ~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~  191 (364)
                      ....+.+...+++.+.  +.++.+|||+|||+|.++..+++.  +|+++|+|+.+++.+++++..       .++++++.
T Consensus        12 fl~d~~~~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~-------~~~v~~~~   82 (244)
T 1qam_A           12 FITSKHNIDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVD-------HDNFQVLN   82 (244)
T ss_dssp             BCCCHHHHHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTT-------CCSEEEEC
T ss_pred             ccCCHHHHHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhcc-------CCCeEEEE
Confidence            3456677788887765  578899999999999999999987  999999999999999998754       25899999


Q ss_pred             cCCCCCCCCC-CCeeEEEEccChH
Q psy7830         192 KDARWGHAEG-GPYDVIFFGAGTT  214 (364)
Q Consensus       192 ~D~~~~~~~~-~~fD~Ii~~~~~~  214 (364)
                      +|+....... ..| .|++|.++.
T Consensus        83 ~D~~~~~~~~~~~~-~vv~nlPy~  105 (244)
T 1qam_A           83 KDILQFKFPKNQSY-KIFGNIPYN  105 (244)
T ss_dssp             CCGGGCCCCSSCCC-EEEEECCGG
T ss_pred             ChHHhCCcccCCCe-EEEEeCCcc
Confidence            9998765442 345 678887764

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.06  E-value=2.6e-10  Score=101.58  Aligned_cols=95  Identities=18%  Similarity=0.104  Sum_probs=74.5

Q ss_pred             HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcceEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC
Q psy7830         121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE  200 (364)
Q Consensus       121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~  200 (364)
                      ...+++.+.. ..++.+|||+|||+|.++..++ .+|+++|+++.                    ++++..+|+...+..
T Consensus        55 ~~~~~~~l~~-~~~~~~vLDiG~G~G~~~~~l~-~~v~~~D~s~~--------------------~~~~~~~d~~~~~~~  112 (215)
T 2zfu_A           55 VDRIARDLRQ-RPASLVVADFGCGDCRLASSIR-NPVHCFDLASL--------------------DPRVTVCDMAQVPLE  112 (215)
T ss_dssp             HHHHHHHHHT-SCTTSCEEEETCTTCHHHHHCC-SCEEEEESSCS--------------------STTEEESCTTSCSCC
T ss_pred             HHHHHHHHhc-cCCCCeEEEECCcCCHHHHHhh-ccEEEEeCCCC--------------------CceEEEeccccCCCC
Confidence            3456666653 4678899999999999998874 38999999987                    133678888776655


Q ss_pred             CCCeeEEEEccChH-----HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         201 GGPYDVIFFGAGTT-----EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~-----~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +++||+|+++..++     .++.++.+.|+|||++++.....
T Consensus       113 ~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~~~  154 (215)
T 2zfu_A          113 DESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSS  154 (215)
T ss_dssp             TTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred             CCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEEEEcCC
Confidence            67899999987653     47789999999999999976543

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.05  E-value=3.8e-10  Score=108.60  Aligned_cols=94  Identities=13%  Similarity=0.095  Sum_probs=71.8

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      +.++.+|||||||+|..+..+++.    +++++|+ +.++.  ++++....   + .++++++.+|+....+   +||+|
T Consensus       182 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~---~-~~~v~~~~~d~~~~~p---~~D~v  251 (348)
T 3lst_A          182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPD---V-AGRWKVVEGDFLREVP---HADVH  251 (348)
T ss_dssp             CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGG---G-TTSEEEEECCTTTCCC---CCSEE
T ss_pred             ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccC---C-CCCeEEEecCCCCCCC---CCcEE
Confidence            467889999999999999999875    8899999 45544  33322210   1 2479999999973222   89999


Q ss_pred             EEccChH--------HHHHHHHhccCCCcEEEEEEc
Q psy7830         208 FFGAGTT--------EVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       208 i~~~~~~--------~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      ++...++        .+++++++.|||||+|++...
T Consensus       252 ~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~  287 (348)
T 3lst_A          252 VLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDA  287 (348)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred             EEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            9988775        367899999999999998664

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.05  E-value=2.1e-09  Score=95.84  Aligned_cols=96  Identities=8%  Similarity=-0.034  Sum_probs=75.9

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCC-CCCCEEEEEcCCCCC----------
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLL-QSKTLEFILKDARWG----------  197 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l-~~~~v~~~~~D~~~~----------  197 (364)
                      +.+.++|||+||  |+.|+.+++.   +|+++|.+++..+.|++++++..   + ..++|+++.+|+...          
T Consensus        28 l~~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g---~~~~~~I~~~~gda~~~~~wg~p~~~~  102 (202)
T 3cvo_A           28 YEEAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANP---PAEGTEVNIVWTDIGPTGDWGHPVSDA  102 (202)
T ss_dssp             HHHCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSC---CCTTCEEEEEECCCSSBCGGGCBSSST
T ss_pred             hhCCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCCCceEEEEeCchhhhcccccccch
Confidence            356789999998  6899999886   99999999999999999998832   2 035899999997543          


Q ss_pred             ----C----------CCCCCeeEEEEccChH-HHHHHHHhccCCCcEEEE
Q psy7830         198 ----H----------AEGGPYDVIFFGAGTT-EVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       198 ----~----------~~~~~fD~Ii~~~~~~-~l~~~l~~~LkpGG~Lvi  232 (364)
                          .          ...++||+|++++... .....+.++|+|||+|++
T Consensus       103 ~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~~~~~~~~l~~l~~GG~Iv~  152 (202)
T 3cvo_A          103 KWRSYPDYPLAVWRTEGFRHPDVVLVDGRFRVGCALATAFSITRPVTLLF  152 (202)
T ss_dssp             TGGGTTHHHHGGGGCTTCCCCSEEEECSSSHHHHHHHHHHHCSSCEEEEE
T ss_pred             hhhhHHHHhhhhhccccCCCCCEEEEeCCCchhHHHHHHHhcCCCeEEEE
Confidence                0          1236899999998754 455567799999999975

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.04  E-value=2.3e-10  Score=111.71  Aligned_cols=101  Identities=20%  Similarity=0.076  Sum_probs=81.0

Q ss_pred             CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCC----------CCCCCCEEEEEcCCCCCCC
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPD----------LLQSKTLEFILKDARWGHA  199 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~----------~l~~~~v~~~~~D~~~~~~  199 (364)
                      ++.+|||+|||+|.+++.++..    +|+++|+++.+++.+++|++.+...          ..+..+++++++|+.....
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            6889999999999999998875    8999999999999999999885100          0023459999999865432


Q ss_pred             C-CCCeeEEEEccCh--HHHHHHHHhccCCCcEEEEEE
Q psy7830         200 E-GGPYDVIFFGAGT--TEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       200 ~-~~~fD~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      . ...||+|+++...  ..+++.+.+.||+||.++++.
T Consensus       127 ~~~~~fD~I~lDP~~~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          127 ERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HSTTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hccCCCCEEEeCCCCCHHHHHHHHHHhcCCCCEEEEEe
Confidence            1 3579999988754  467888999999999998875

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.04  E-value=2.6e-10  Score=112.07  Aligned_cols=110  Identities=23%  Similarity=0.199  Sum_probs=85.4

Q ss_pred             CCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCC
Q psy7830         111 NQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSK  185 (364)
Q Consensus       111 ~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~  185 (364)
                      .|+..+.+.++..+++.+.  ..++.+|||+|||+|.++..+++.     +++|+|+++.+++.|              .
T Consensus        18 ~g~~~TP~~l~~~~~~~~~--~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--------------~   81 (421)
T 2ih2_A           18 LGRVETPPEVVDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------------P   81 (421)
T ss_dssp             ---CCCCHHHHHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------------T
T ss_pred             CceEeCCHHHHHHHHHhhc--cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC--------------C
Confidence            3566666777788888775  345779999999999999998862     899999999998665              2


Q ss_pred             CEEEEEcCCCCCCCCCCCeeEEEEccCh--------------H---------------------HHHHHHHhccCCCcEE
Q psy7830         186 TLEFILKDARWGHAEGGPYDVIFFGAGT--------------T---------------------EVSKTILSQLKPNGRI  230 (364)
Q Consensus       186 ~v~~~~~D~~~~~~~~~~fD~Ii~~~~~--------------~---------------------~l~~~l~~~LkpGG~L  230 (364)
                      +++++++|...... .++||+|++|.++              .                     .++..+.++|+|||++
T Consensus        82 ~~~~~~~D~~~~~~-~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~  160 (421)
T 2ih2_A           82 WAEGILADFLLWEP-GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVL  160 (421)
T ss_dssp             TEEEEESCGGGCCC-SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEE
T ss_pred             CCcEEeCChhhcCc-cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEE
Confidence            68899999887643 3689999997443              1                     2467788999999999


Q ss_pred             EEEEcCC
Q psy7830         231 VAPVGNV  237 (364)
Q Consensus       231 vi~~~~~  237 (364)
                      ++.++..
T Consensus       161 ~~i~p~~  167 (421)
T 2ih2_A          161 VFVVPAT  167 (421)
T ss_dssp             EEEEEGG
T ss_pred             EEEEChH
Confidence            9988764

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.04  E-value=6.4e-10  Score=97.33  Aligned_cols=90  Identities=21%  Similarity=0.167  Sum_probs=68.9

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc-------------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEE-EcCCCCC
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL-------------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFI-LKDARWG  197 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~-------------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~-~~D~~~~  197 (364)
                      ++++.+|||+|||+|.++..+++.             +|+++|+++.+         .       ..+++++ .+|+...
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------~-------~~~~~~~~~~d~~~~   83 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------P-------LEGATFLCPADVTDP   83 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------C-------CTTCEEECSCCTTSH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------c-------CCCCeEEEeccCCCH
Confidence            578999999999999999988764             49999999831         0       2468888 8887643


Q ss_pred             C--------CCCCCeeEEEEccCh-----------------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         198 H--------AEGGPYDVIFFGAGT-----------------TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       198 ~--------~~~~~fD~Ii~~~~~-----------------~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      .        ..+++||+|+++...                 ..++.++.+.|||||++++.+...
T Consensus        84 ~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  148 (196)
T 2nyu_A           84 RTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG  148 (196)
T ss_dssp             HHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             HHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence            2        123579999986532                 145678899999999999987654

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.03  E-value=3.1e-10  Score=110.79  Aligned_cols=91  Identities=16%  Similarity=0.141  Sum_probs=70.8

Q ss_pred             CCCCCEEEEECCC------ccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC
Q psy7830         132 LQNGSRVLDIGSG------QGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE  200 (364)
Q Consensus       132 l~~g~~VLDiGcG------sG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~  200 (364)
                      ..++.+|||||||      +|+.+..+++.     +|+|+|+++.|.      . .       .++++++++|+.+.+..
T Consensus       214 ~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~-~-------~~rI~fv~GDa~dlpf~  279 (419)
T 3sso_A          214 RNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V-D-------ELRIRTIQGDQNDAEFL  279 (419)
T ss_dssp             TTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G-C-------BTTEEEEECCTTCHHHH
T ss_pred             cCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h-c-------CCCcEEEEecccccchh
Confidence            3567899999999      67777666643     999999999972      1 1       25899999999875443


Q ss_pred             ------CCCeeEEEEccCh-----HHHHHHHHhccCCCcEEEEEEcC
Q psy7830         201 ------GGPYDVIFFGAGT-----TEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       201 ------~~~fD~Ii~~~~~-----~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                            .++||+|+++...     ...++++.++|||||++++....
T Consensus       280 ~~l~~~d~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          280 DRIARRYGPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             HHHHHHHCCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             hhhhcccCCccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence                  4789999997653     23578999999999999987544

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.03  E-value=6.3e-12  Score=115.30  Aligned_cols=113  Identities=17%  Similarity=0.156  Sum_probs=88.0

Q ss_pred             cChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830         115 MEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK  192 (364)
Q Consensus       115 ~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~  192 (364)
                      ...+.+...+++.+.  +.++.+|||+|||+|.++..+++.  +|+|+|+|+.+++.+++++..       .++++++.+
T Consensus        12 l~~~~~~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~-------~~~v~~~~~   82 (245)
T 1yub_A           12 LTSEKVLNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL-------NTRVTLIHQ   82 (245)
T ss_dssp             CCCTTTHHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT-------CSEEEECCS
T ss_pred             CCCHHHHHHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhcc-------CCceEEEEC
Confidence            345557788888776  678899999999999999999887  999999999999998877642       258999999


Q ss_pred             CCCCCCCC-CCCeeEEEEccChH-------HHH--------------HHHHhccCCCcEEEEEEcCC
Q psy7830         193 DARWGHAE-GGPYDVIFFGAGTT-------EVS--------------KTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       193 D~~~~~~~-~~~fD~Ii~~~~~~-------~l~--------------~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      |+...... .++| .|++|.++.       ++.              +.+.++|+|||++++.....
T Consensus        83 D~~~~~~~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~~~  148 (245)
T 1yub_A           83 DILQFQFPNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLHTQ  148 (245)
T ss_dssp             CCTTTTCCCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTTTT
T ss_pred             ChhhcCcccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhheeh
Confidence            99876544 2578 778876542       121              55888999999988766543

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=99.02  E-value=1.4e-09  Score=101.97  Aligned_cols=101  Identities=15%  Similarity=0.065  Sum_probs=80.7

Q ss_pred             ccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--e----EEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE
Q psy7830         114 VMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--S----SVRQLLLPETLNNSLKNIKISRPDLLQSKTL  187 (364)
Q Consensus       114 ~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~----V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v  187 (364)
                      ....+.+..++++.+.  +.++.+|||||||+|.++..+++.  .    |+++|+|+.+++.++++. .        .++
T Consensus        24 fL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~--------~~v   92 (279)
T 3uzu_A           24 FLVDHGVIDAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-G--------ELL   92 (279)
T ss_dssp             EECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-G--------GGE
T ss_pred             ccCCHHHHHHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-C--------CCc
Confidence            4467778899999887  688999999999999999999987  6    999999999999999984 2        489


Q ss_pred             EEEEcCCCCCCCCC--C----CeeEEEEccChHHHHHHHHhccC
Q psy7830         188 EFILKDARWGHAEG--G----PYDVIFFGAGTTEVSKTILSQLK  225 (364)
Q Consensus       188 ~~~~~D~~~~~~~~--~----~fD~Ii~~~~~~~l~~~l~~~Lk  225 (364)
                      +++.+|+......+  .    ..+.|++|.++.--.+-+.++|.
T Consensus        93 ~~i~~D~~~~~~~~~~~~~~~~~~~vv~NlPY~iss~il~~ll~  136 (279)
T 3uzu_A           93 ELHAGDALTFDFGSIARPGDEPSLRIIGNLPYNISSPLLFHLMS  136 (279)
T ss_dssp             EEEESCGGGCCGGGGSCSSSSCCEEEEEECCHHHHHHHHHHHGG
T ss_pred             EEEECChhcCChhHhcccccCCceEEEEccCccccHHHHHHHHh
Confidence            99999998765432  1    24578999988754444555554

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.01  E-value=7.4e-10  Score=108.49  Aligned_cols=99  Identities=14%  Similarity=0.076  Sum_probs=82.0

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC--EEEEEcCCCCCCC-C-CCC
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT--LEFILKDARWGHA-E-GGP  203 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~--v~~~~~D~~~~~~-~-~~~  203 (364)
                      ++|.+|||++||+|.+++.++..     +|+++|+++.+++.+++|++.|.     ..+  ++++.+|+..... . .+.
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ng-----l~~~~v~v~~~Da~~~l~~~~~~~  125 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNN-----IPEDRYEIHGMEANFFLRKEWGFG  125 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTT-----CCGGGEEEECSCHHHHHHSCCSSC
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhC-----CCCceEEEEeCCHHHHHHHhhCCC
Confidence            46899999999999999988872     89999999999999999999844     334  9999999865432 2 357


Q ss_pred             eeEEEEccCh--HHHHHHHHhccCCCcEEEEEEcC
Q psy7830         204 YDVIFFGAGT--TEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       204 fD~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ||+|+++...  ..+++.+.+.|++||+|+++...
T Consensus       126 fD~V~lDP~g~~~~~l~~a~~~Lk~gGll~~t~t~  160 (392)
T 3axs_A          126 FDYVDLDPFGTPVPFIESVALSMKRGGILSLTATD  160 (392)
T ss_dssp             EEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CcEEEECCCcCHHHHHHHHHHHhCCCCEEEEEecc
Confidence            9999999732  46888899999999999987733

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.98  E-value=3e-09  Score=102.80  Aligned_cols=96  Identities=18%  Similarity=0.193  Sum_probs=78.4

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      .....+|+|||||+|..+..+++.    +++..|. |.+++.|++++...     +.++|+++.+|+...+.  ..+|+|
T Consensus       177 ~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~-----~~~rv~~~~gD~~~~~~--~~~D~~  248 (353)
T 4a6d_A          177 LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQ-----EEEQIDFQEGDFFKDPL--PEADLY  248 (353)
T ss_dssp             GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC-------CCSEEEEESCTTTSCC--CCCSEE
T ss_pred             cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhc-----ccCceeeecCccccCCC--CCceEE
Confidence            456789999999999999999987    7888887 88999999887652     24699999999876543  358999


Q ss_pred             EEccChHH--------HHHHHHhccCCCcEEEEEEc
Q psy7830         208 FFGAGTTE--------VSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       208 i~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      ++...++.        +++++++.|+|||++++...
T Consensus       249 ~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~  284 (353)
T 4a6d_A          249 ILARVLHDWADGKCSHLLERIYHTCKPGGGILVIES  284 (353)
T ss_dssp             EEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             EeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence            98877753        68899999999999998653

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.96  E-value=5.5e-10  Score=103.15  Aligned_cols=90  Identities=13%  Similarity=0.020  Sum_probs=73.2

Q ss_pred             cChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-e--EEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830         115 MEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-S--SVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL  191 (364)
Q Consensus       115 ~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-~--V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~  191 (364)
                      ...|.++.++++.+.  +.++++|||||||+|.++. +++. +  |+++|+|+.+++.+++++..       .++++++.
T Consensus         4 L~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~~~~~~~v~avEid~~~~~~a~~~~~~-------~~~v~~i~   73 (252)
T 1qyr_A            4 LNDQFVIDSIVSAIN--PQKGQAMVEIGPGLAALTE-PVGERLDQLTVIELDRDLAARLQTHPFL-------GPKLTIYQ   73 (252)
T ss_dssp             ECCHHHHHHHHHHHC--CCTTCCEEEECCTTTTTHH-HHHTTCSCEEEECCCHHHHHHHHTCTTT-------GGGEEEEC
T ss_pred             cCCHHHHHHHHHhcC--CCCcCEEEEECCCCcHHHH-hhhCCCCeEEEEECCHHHHHHHHHHhcc-------CCceEEEE
Confidence            356788999999886  6889999999999999999 7655 6  99999999999999987644       24899999


Q ss_pred             cCCCCCCCCC-----CCeeEEEEccChH
Q psy7830         192 KDARWGHAEG-----GPYDVIFFGAGTT  214 (364)
Q Consensus       192 ~D~~~~~~~~-----~~fD~Ii~~~~~~  214 (364)
                      +|+......+     +..|.|++|.++.
T Consensus        74 ~D~~~~~~~~~~~~~~~~~~vvsNlPY~  101 (252)
T 1qyr_A           74 QDAMTFNFGELAEKMGQPLRVFGNLPYN  101 (252)
T ss_dssp             SCGGGCCHHHHHHHHTSCEEEEEECCTT
T ss_pred             CchhhCCHHHhhcccCCceEEEECCCCC
Confidence            9998764321     2357899998864

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.95  E-value=2.2e-09  Score=109.50  Aligned_cols=119  Identities=16%  Similarity=0.117  Sum_probs=92.5

Q ss_pred             CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----------------------eEEEEeCCHHHHHH
Q psy7830         112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----------------------SSVRQLLLPETLNN  169 (364)
Q Consensus       112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----------------------~V~~vDis~~~l~~  169 (364)
                      |++.+.+.++..+++.+.  ..++.+|||.|||+|.+...+++.                      .++|+|+++.+++.
T Consensus       149 G~fyTP~~iv~~mv~~l~--p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~l  226 (541)
T 2ar0_A          149 GQYFTPRPLIKTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL  226 (541)
T ss_dssp             -CCCCCHHHHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHH
T ss_pred             CeeeCCHHHHHHHHHHhc--cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHH
Confidence            666666677777788776  577899999999999998777542                      59999999999999


Q ss_pred             HHHHHHhcCCCCCCCCC-----EEEEEcCCCCCC-CCCCCeeEEEEccChH--------------------HHHHHHHhc
Q psy7830         170 SLKNIKISRPDLLQSKT-----LEFILKDARWGH-AEGGPYDVIFFGAGTT--------------------EVSKTILSQ  223 (364)
Q Consensus       170 a~~~~~~~~~~~l~~~~-----v~~~~~D~~~~~-~~~~~fD~Ii~~~~~~--------------------~l~~~l~~~  223 (364)
                      |+.|+...     +..+     +.+.++|..... ....+||+|++|.++.                    .++..+.+.
T Consensus       227 A~~nl~l~-----gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~  301 (541)
T 2ar0_A          227 ALMNCLLH-----DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIET  301 (541)
T ss_dssp             HHHHHHTT-----TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHh-----CCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHH
Confidence            99998762     2233     778899976542 2246899999998753                    356788999


Q ss_pred             cCCCcEEEEEEcCC
Q psy7830         224 LKPNGRIVAPVGNV  237 (364)
Q Consensus       224 LkpGG~Lvi~~~~~  237 (364)
                      |||||++++.++..
T Consensus       302 Lk~gGr~a~V~p~~  315 (541)
T 2ar0_A          302 LHPGGRAAVVVPDN  315 (541)
T ss_dssp             EEEEEEEEEEEEHH
T ss_pred             hCCCCEEEEEecCc
Confidence            99999999988654

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.95  E-value=1.4e-09  Score=105.52  Aligned_cols=88  Identities=19%  Similarity=0.226  Sum_probs=72.7

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      +.++.+|||+|||+|..+..+++.    +++++|+ +.+++.+++           .++++++.+|+.. ..+  .||+|
T Consensus       207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~-~~~--~~D~v  271 (372)
T 1fp1_D          207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP-----------LSGIEHVGGDMFA-SVP--QGDAM  271 (372)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----------CTTEEEEECCTTT-CCC--CEEEE
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh-----------cCCCEEEeCCccc-CCC--CCCEE
Confidence            356789999999999999999876    7888999 898876653           1479999999976 332  39999


Q ss_pred             EEccChH--------HHHHHHHhccCCCcEEEEEE
Q psy7830         208 FFGAGTT--------EVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       208 i~~~~~~--------~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      +++..++        .+++++.+.|||||+|++..
T Consensus       272 ~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e  306 (372)
T 1fp1_D          272 ILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE  306 (372)
T ss_dssp             EEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            9988875        46789999999999999864

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.94  E-value=1.9e-09  Score=99.38  Aligned_cols=90  Identities=17%  Similarity=0.107  Sum_probs=73.9

Q ss_pred             ccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEE
Q psy7830         114 VMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFI  190 (364)
Q Consensus       114 ~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~  190 (364)
                      ....+.++.++++.+.  +.++.+|||+|||+|.++..+++.   +|+++|+|+.+++.++++  .       ..+++++
T Consensus        13 fl~d~~i~~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~--~-------~~~v~~i   81 (249)
T 3ftd_A           13 LLVSEGVLKKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI--G-------DERLEVI   81 (249)
T ss_dssp             CEECHHHHHHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS--C-------CTTEEEE
T ss_pred             ccCCHHHHHHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc--c-------CCCeEEE
Confidence            3456778899999887  678999999999999999999876   999999999999999887  2       1489999


Q ss_pred             EcCCCCCCCCC--CCeeEEEEccChHH
Q psy7830         191 LKDARWGHAEG--GPYDVIFFGAGTTE  215 (364)
Q Consensus       191 ~~D~~~~~~~~--~~fD~Ii~~~~~~~  215 (364)
                      .+|+......+  +.| .|++|.++.-
T Consensus        82 ~~D~~~~~~~~~~~~~-~vv~NlPy~i  107 (249)
T 3ftd_A           82 NEDASKFPFCSLGKEL-KVVGNLPYNV  107 (249)
T ss_dssp             CSCTTTCCGGGSCSSE-EEEEECCTTT
T ss_pred             EcchhhCChhHccCCc-EEEEECchhc
Confidence            99998765432  234 8889988754

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.94  E-value=2e-09  Score=104.49  Aligned_cols=90  Identities=18%  Similarity=0.193  Sum_probs=72.9

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      ..++.+|||||||+|..+..+++.    +++++|+ +.+++.+++           .++++++.+|+.. +.+.+  |+|
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~-~~p~~--D~v  263 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ-----------FPGVTHVGGDMFK-EVPSG--DTI  263 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----------CTTEEEEECCTTT-CCCCC--SEE
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh-----------cCCeEEEeCCcCC-CCCCC--CEE
Confidence            456789999999999999999875    8999999 888776543           1489999999987 33333  999


Q ss_pred             EEccChH--------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         208 FFGAGTT--------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       208 i~~~~~~--------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ++...++        .+++++++.|||||+|++....
T Consensus       264 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~  300 (364)
T 3p9c_A          264 LMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCI  300 (364)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             EehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            9987775        3678999999999999986543

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.93  E-value=1.6e-09  Score=105.15  Aligned_cols=90  Identities=19%  Similarity=0.261  Sum_probs=72.7

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      +.++.+|||||||+|..+..+++.    +++++|+ +.+++.+++           .++++++.+|+.+. .+.+  |+|
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~-~p~~--D~v  265 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA-----------FSGVEHLGGDMFDG-VPKG--DAI  265 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----------CTTEEEEECCTTTC-CCCC--SEE
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh-----------cCCCEEEecCCCCC-CCCC--CEE
Confidence            346789999999999999999875    8999999 888876543           14899999999863 2223  999


Q ss_pred             EEccChH--------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         208 FFGAGTT--------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       208 i~~~~~~--------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ++...++        .+++++++.|||||+|++....
T Consensus       266 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  302 (368)
T 3reo_A          266 FIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYI  302 (368)
T ss_dssp             EEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             EEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            9988776        3678999999999999986643

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.90  E-value=1.6e-09  Score=102.48  Aligned_cols=90  Identities=17%  Similarity=0.137  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830         118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD  193 (364)
Q Consensus       118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D  193 (364)
                      |.++..+++.|.  ++++.+|||+|||+|..+..+++.    +|+|+|+|+.+++.|++|+..     .+ .+++++++|
T Consensus        12 pvLl~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~-----~g-~~v~~v~~d   83 (301)
T 1m6y_A           12 PVMVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKE-----FS-DRVSLFKVS   83 (301)
T ss_dssp             CTTHHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGG-----GT-TTEEEEECC
T ss_pred             HHHHHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh-----cC-CcEEEEECC
Confidence            447788888887  678999999999999999998875    899999999999999999877     23 589999999


Q ss_pred             CCCCCC--C---CCCeeEEEEccChHH
Q psy7830         194 ARWGHA--E---GGPYDVIFFGAGTTE  215 (364)
Q Consensus       194 ~~~~~~--~---~~~fD~Ii~~~~~~~  215 (364)
                      +..+..  .   ..+||.|+++.++..
T Consensus        84 ~~~l~~~l~~~g~~~~D~Vl~D~gvSs  110 (301)
T 1m6y_A           84 YREADFLLKTLGIEKVDGILMDLGVST  110 (301)
T ss_dssp             GGGHHHHHHHTTCSCEEEEEEECSCCH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEcCccch
Confidence            876431  1   147999999887643

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.90  E-value=3.7e-10  Score=97.55  Aligned_cols=81  Identities=15%  Similarity=0.126  Sum_probs=67.9

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcceEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC---CCCCeeEEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA---EGGPYDVIF  208 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~---~~~~fD~Ii  208 (364)
                      +++|.+|||+|||.           | ++|+++.|++.|+++...         ++++.++|+.....   .+++||+|+
T Consensus        10 ~~~g~~vL~~~~g~-----------v-~vD~s~~ml~~a~~~~~~---------~~~~~~~d~~~~~~~~~~~~~fD~V~   68 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS-----------S-PVEALKGLVDKLQALTGN---------EGRVSVENIKQLLQSAHKESSFDIIL   68 (176)
T ss_dssp             CCTTSEEEEEECTT-----------S-CHHHHHHHHHHHHHHTTT---------TSEEEEEEGGGGGGGCCCSSCEEEEE
T ss_pred             CCCCCEEEEecCCc-----------e-eeeCCHHHHHHHHHhccc---------CcEEEEechhcCccccCCCCCEeEEE
Confidence            67899999999996           2 399999999999988632         58899999987665   567899999


Q ss_pred             EccChH-------HHHHHHHhccCCCcEEEEE
Q psy7830         209 FGAGTT-------EVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       209 ~~~~~~-------~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ++..++       .+++++++.|||||++++.
T Consensus        69 ~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~  100 (176)
T 2ld4_A           69 SGLVPGSTTLHSAEILAEIARILRPGGCLFLK  100 (176)
T ss_dssp             ECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             ECChhhhcccCHHHHHHHHHHHCCCCEEEEEE
Confidence            976654       3678999999999999984

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.89  E-value=1.6e-08  Score=106.27  Aligned_cols=120  Identities=13%  Similarity=0.085  Sum_probs=92.0

Q ss_pred             CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc------------------------------------
Q psy7830         112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL------------------------------------  155 (364)
Q Consensus       112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~------------------------------------  155 (364)
                      +..+..+.+.+.++....  ..++..|||.+||||.+.+.++..                                    
T Consensus       170 ~~apl~e~LAa~ll~~~~--~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~  247 (703)
T 3v97_A          170 GIAPIKETLAAAIVMRSG--WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTR  247 (703)
T ss_dssp             CCCSSCHHHHHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHhhC--CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHH
Confidence            455667778788887765  578889999999999998776531                                    


Q ss_pred             ----------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCC-CEEEEEcCCCCCCCC--CCCeeEEEEccChH--------
Q psy7830         156 ----------SSVRQLLLPETLNNSLKNIKISRPDLLQSK-TLEFILKDARWGHAE--GGPYDVIFFGAGTT--------  214 (364)
Q Consensus       156 ----------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~-~v~~~~~D~~~~~~~--~~~fD~Ii~~~~~~--------  214 (364)
                                +|+|+|+++.+++.|++|+...     +.. .+++.++|+.+...+  .++||+|++|.++.        
T Consensus       248 ~~~~~~~~~~~i~G~Did~~av~~A~~N~~~a-----gv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~  322 (703)
T 3v97_A          248 ARKGLAEYSSHFYGSDSDARVIQRARTNARLA-----GIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPA  322 (703)
T ss_dssp             HHHHHHHCCCCEEEEESCHHHHHHHHHHHHHT-----TCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHH
T ss_pred             hhhccccCCccEEEEECCHHHHHHHHHHHHHc-----CCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhH
Confidence                      5999999999999999999882     233 599999999876432  23799999998862        


Q ss_pred             --HHH---HHHHhccCCCcEEEEEEcCCC
Q psy7830         215 --EVS---KTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       215 --~l~---~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                        .+.   ..+.+.+.|||.+++.+++..
T Consensus       323 l~~ly~~l~~~lk~~~~g~~~~ilt~~~~  351 (703)
T 3v97_A          323 LIALHSLLGRIMKNQFGGWNLSLFSASPD  351 (703)
T ss_dssp             HHHHHHHHHHHHHHHCTTCEEEEEESCHH
T ss_pred             HHHHHHHHHHHHHhhCCCCeEEEEeCCHH
Confidence              122   344455668999999887765

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.88  E-value=2.5e-09  Score=103.03  Aligned_cols=89  Identities=15%  Similarity=0.132  Sum_probs=73.3

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      +.++.+|||+|||+|..+..+++.    +++++|+ +.+++.+++           .++++++.+|+... .+  .||+|
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~-~p--~~D~v  250 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG-----------SNNLTYVGGDMFTS-IP--NADAV  250 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----------BTTEEEEECCTTTC-CC--CCSEE
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc-----------CCCcEEEeccccCC-CC--CccEE
Confidence            456789999999999999999865    8999999 999877653           13699999998762 22  39999


Q ss_pred             EEccChH--------HHHHHHHhccCC---CcEEEEEEc
Q psy7830         208 FFGAGTT--------EVSKTILSQLKP---NGRIVAPVG  235 (364)
Q Consensus       208 i~~~~~~--------~l~~~l~~~Lkp---GG~Lvi~~~  235 (364)
                      ++...++        .+++++.+.|||   ||++++...
T Consensus       251 ~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~  289 (352)
T 1fp2_A          251 LLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM  289 (352)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred             EeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence            9988775        467899999999   999998653

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.88  E-value=5.4e-09  Score=102.73  Aligned_cols=80  Identities=18%  Similarity=0.112  Sum_probs=66.0

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC--CCCeeEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE--GGPYDVI  207 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~--~~~fD~I  207 (364)
                      +.+|.+|||+|||+|..+..+++.  +|+++|+|+.+++.|++|++.+.   .+..+++++++|+.+....  .++||+|
T Consensus        91 l~~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~---~gl~~i~~i~~Da~~~L~~~~~~~fDvV  167 (410)
T 3ll7_A           91 IREGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLL---NEGKDVNILTGDFKEYLPLIKTFHPDYI  167 (410)
T ss_dssp             SCTTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHS---CTTCEEEEEESCGGGSHHHHHHHCCSEE
T ss_pred             cCCCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhc---cCCCcEEEEECcHHHhhhhccCCCceEE
Confidence            456899999999999999999988  99999999999999999998730   0346899999999875321  2579999


Q ss_pred             EEccChH
Q psy7830         208 FFGAGTT  214 (364)
Q Consensus       208 i~~~~~~  214 (364)
                      +++.+..
T Consensus       168 ~lDPPrr  174 (410)
T 3ll7_A          168 YVDPARR  174 (410)
T ss_dssp             EECCEEC
T ss_pred             EECCCCc
Confidence            9986653

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.85  E-value=1.8e-08  Score=102.66  Aligned_cols=123  Identities=14%  Similarity=0.042  Sum_probs=94.8

Q ss_pred             CCccChHHHHHHHHHHHhcc--CCCCCEEEEECCCccHHHHHHHcc-------eEEEEeCCHHHHHHHHHHHHhcCCCCC
Q psy7830         112 QVVMEPPSYIARCLEQLVDH--LQNGSRVLDIGSGQGYMATAKEWL-------SSVRQLLLPETLNNSLKNIKISRPDLL  182 (364)
Q Consensus       112 g~~~s~P~~~a~~l~~L~~~--l~~g~~VLDiGcGsG~~a~~la~~-------~V~~vDis~~~l~~a~~~~~~~~~~~l  182 (364)
                      |++-+.+.++..|++.+...  ..++.+|||.+||||.+...+++.       .++|+|+++.++..|+.|+....   +
T Consensus       197 G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g---i  273 (542)
T 3lkd_A          197 GEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHG---V  273 (542)
T ss_dssp             SSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTT---C
T ss_pred             CeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcC---C
Confidence            66777777888888887632  247889999999999988766543       79999999999999999987632   2


Q ss_pred             CCCCEEEEEcCCCCC--C-CCCCCeeEEEEccChH-----------------------------HHHHHHHhccC-CCcE
Q psy7830         183 QSKTLEFILKDARWG--H-AEGGPYDVIFFGAGTT-----------------------------EVSKTILSQLK-PNGR  229 (364)
Q Consensus       183 ~~~~v~~~~~D~~~~--~-~~~~~fD~Ii~~~~~~-----------------------------~l~~~l~~~Lk-pGG~  229 (364)
                      ...++.+.++|....  + ....+||+|++|.++.                             .++..+.+.|+ +||+
T Consensus       274 ~~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr  353 (542)
T 3lkd_A          274 PIENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGV  353 (542)
T ss_dssp             CGGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCE
T ss_pred             CcCccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCcee
Confidence            224788999998754  2 2346899999986651                             04577889999 9999


Q ss_pred             EEEEEcCC
Q psy7830         230 IVAPVGNV  237 (364)
Q Consensus       230 Lvi~~~~~  237 (364)
                      +++.++..
T Consensus       354 ~a~VlP~g  361 (542)
T 3lkd_A          354 MAIVLPHG  361 (542)
T ss_dssp             EEEEEETH
T ss_pred             EEEEecch
Confidence            99888764

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.83  E-value=2.6e-08  Score=93.59  Aligned_cols=106  Identities=17%  Similarity=0.182  Sum_probs=85.5

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC-CCCeeEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE-GGPYDVI  207 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD~I  207 (364)
                      ....+||-||.|.|..+..+++.    +|+.||+|+.+++.+++.+.......+..++++++.+|+...... .++||+|
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI  161 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI  161 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence            45679999999999999999886    899999999999999998754111114457999999999876543 4689999


Q ss_pred             EEccCh----------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         208 FFGAGT----------TEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       208 i~~~~~----------~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      +++..-          ....+.+.+.|+|||+++...+...
T Consensus       162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~  202 (294)
T 3o4f_A          162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCF  202 (294)
T ss_dssp             EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESS
T ss_pred             EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcc
Confidence            987542          2477899999999999999876654

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.81  E-value=7e-09  Score=97.59  Aligned_cols=96  Identities=18%  Similarity=0.164  Sum_probs=69.4

Q ss_pred             HHHHHHHHh---ccCCCCCEEEEECCCc------cHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC
Q psy7830         121 IARCLEQLV---DHLQNGSRVLDIGSGQ------GYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT  186 (364)
Q Consensus       121 ~a~~l~~L~---~~l~~g~~VLDiGcGs------G~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~  186 (364)
                      ...+.+++.   -.++++++|||+|||+      |.  ..+++.     +|+|+|+++.        +          ++
T Consensus        47 y~~l~~~l~~~~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v----------~~  106 (290)
T 2xyq_A           47 YTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V----------SD  106 (290)
T ss_dssp             HHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B----------CS
T ss_pred             HHHHHHHHHHhhcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C----------CC
Confidence            344555552   1257899999999944      66  223322     8999999988        1          25


Q ss_pred             EEE-EEcCCCCCCCCCCCeeEEEEccCh-----------------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         187 LEF-ILKDARWGHAEGGPYDVIFFGAGT-----------------TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       187 v~~-~~~D~~~~~~~~~~fD~Ii~~~~~-----------------~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +++ +++|+...... ++||+|++|...                 ..+++.+.+.|||||++++.+...
T Consensus       107 v~~~i~gD~~~~~~~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~  174 (290)
T 2xyq_A          107 ADSTLIGDCATVHTA-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH  174 (290)
T ss_dssp             SSEEEESCGGGCCCS-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred             CEEEEECccccCCcc-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            778 99999876543 689999997542                 257789999999999999977543

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.79  E-value=1.3e-08  Score=103.73  Aligned_cols=119  Identities=19%  Similarity=0.141  Sum_probs=90.5

Q ss_pred             CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHc------------------c-eEEEEeCCHHHHHHHHH
Q psy7830         112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEW------------------L-SSVRQLLLPETLNNSLK  172 (364)
Q Consensus       112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~------------------~-~V~~vDis~~~l~~a~~  172 (364)
                      |++.+.+.++..|++.+.  ..++ +|||.+||||.+...+++                  . .++|+|+++.++..|+.
T Consensus       225 G~fyTP~~Vv~lmv~ll~--p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~  301 (544)
T 3khk_A          225 GQYYTPKSIVTLIVEMLE--PYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAM  301 (544)
T ss_dssp             TTTCCCHHHHHHHHHHHC--CCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHH
T ss_pred             CeEeCCHHHHHHHHHHHh--cCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHH
Confidence            677777888888888876  3455 999999999998877642                  2 79999999999999999


Q ss_pred             HHHhcCCCCCCCCCEEEEEcCCCCCC-CCCCCeeEEEEccChH-----------------------------------HH
Q psy7830         173 NIKISRPDLLQSKTLEFILKDARWGH-AEGGPYDVIFFGAGTT-----------------------------------EV  216 (364)
Q Consensus       173 ~~~~~~~~~l~~~~v~~~~~D~~~~~-~~~~~fD~Ii~~~~~~-----------------------------------~l  216 (364)
                      |+....   +. .++.+.++|..... ....+||+|++|.++.                                   .+
T Consensus       302 Nl~l~g---i~-~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~F  377 (544)
T 3khk_A          302 NMVIRG---ID-FNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAW  377 (544)
T ss_dssp             HHHHTT---CC-CBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHH
T ss_pred             HHHHhC---CC-cccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHH
Confidence            987622   21 23444778866443 2246899999987763                                   14


Q ss_pred             HHHHHhccCCCcEEEEEEcCC
Q psy7830         217 SKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       217 ~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +..+.+.|+|||++++.++..
T Consensus       378 l~~~l~~Lk~gGr~aiVlP~g  398 (544)
T 3khk_A          378 MLHMLYHLAPTGSMALLLANG  398 (544)
T ss_dssp             HHHHHHTEEEEEEEEEEEETH
T ss_pred             HHHHHHHhccCceEEEEecch
Confidence            578889999999999888654

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.75  E-value=9.2e-09  Score=99.21  Aligned_cols=89  Identities=13%  Similarity=0.167  Sum_probs=72.2

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      +.++.+|||||||+|.++..+++.    +++++|+ +.+++.+++           .++++++.+|+.. ..  ..||+|
T Consensus       191 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~-~~--~~~D~v  255 (358)
T 1zg3_A          191 FEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG-----------NENLNFVGGDMFK-SI--PSADAV  255 (358)
T ss_dssp             HHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC-----------CSSEEEEECCTTT-CC--CCCSEE
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc-----------CCCcEEEeCccCC-CC--CCceEE
Confidence            356789999999999999999876    8999999 788765543           1469999999976 33  259999


Q ss_pred             EEccChH--------HHHHHHHhccCC---CcEEEEEEc
Q psy7830         208 FFGAGTT--------EVSKTILSQLKP---NGRIVAPVG  235 (364)
Q Consensus       208 i~~~~~~--------~l~~~l~~~Lkp---GG~Lvi~~~  235 (364)
                      +++..++        .+++++.+.|||   ||+|++...
T Consensus       256 ~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~  294 (358)
T 1zg3_A          256 LLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDI  294 (358)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred             EEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence            9988775        467899999999   999998653

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.75  E-value=2.3e-09  Score=99.33  Aligned_cols=79  Identities=14%  Similarity=0.130  Sum_probs=63.2

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCH-------HHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC--C
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLP-------ETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA--E  200 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~-------~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~--~  200 (364)
                      ..++.+|||+|||+|..++.++..  +|+++|+++       .+++.|++|++.+.   + ..+++++++|+.+...  .
T Consensus        81 ~~~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~---~-~~ri~~~~~d~~~~l~~~~  156 (258)
T 2r6z_A           81 HTAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQD---T-AARINLHFGNAAEQMPALV  156 (258)
T ss_dssp             GGGCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHH---H-HTTEEEEESCHHHHHHHHH
T ss_pred             cCCcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhC---C-ccCeEEEECCHHHHHHhhh
Confidence            457789999999999999999988  999999999       99999998876622   1 1259999999876432  1


Q ss_pred             C--CCeeEEEEccChH
Q psy7830         201 G--GPYDVIFFGAGTT  214 (364)
Q Consensus       201 ~--~~fD~Ii~~~~~~  214 (364)
                      +  ++||+|+++.+++
T Consensus       157 ~~~~~fD~V~~dP~~~  172 (258)
T 2r6z_A          157 KTQGKPDIVYLDPMYP  172 (258)
T ss_dssp             HHHCCCSEEEECCCC-
T ss_pred             ccCCCccEEEECCCCC
Confidence            2  5799999987553

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.70  E-value=7.6e-08  Score=100.82  Aligned_cols=126  Identities=10%  Similarity=-0.046  Sum_probs=87.2

Q ss_pred             CCccChHHHHHHHHHH----HhccCCCCCEEEEECCCccHHHHHHHcc-------eEEEEeCCHHHHHHH--HHHHHhcC
Q psy7830         112 QVVMEPPSYIARCLEQ----LVDHLQNGSRVLDIGSGQGYMATAKEWL-------SSVRQLLLPETLNNS--LKNIKISR  178 (364)
Q Consensus       112 g~~~s~P~~~a~~l~~----L~~~l~~g~~VLDiGcGsG~~a~~la~~-------~V~~vDis~~~l~~a--~~~~~~~~  178 (364)
                      |+..+.+.++..|++.    +.....++.+|||.|||+|.+...+++.       +++|+|+++.+++.|  +.|+..+.
T Consensus       295 GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~  374 (878)
T 3s1s_A          295 GVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQ  374 (878)
T ss_dssp             BSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTT
T ss_pred             ceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhh
Confidence            5666777777777776    2222346889999999999999888764       699999999999999  55554311


Q ss_pred             CCCCCCCCEEEEEcCCCCCC-CCCCCeeEEEEccChHH-----------------------------------HHHHHHh
Q psy7830         179 PDLLQSKTLEFILKDARWGH-AEGGPYDVIFFGAGTTE-----------------------------------VSKTILS  222 (364)
Q Consensus       179 ~~~l~~~~v~~~~~D~~~~~-~~~~~fD~Ii~~~~~~~-----------------------------------l~~~l~~  222 (364)
                      - ..+.....+...|..... ....+||+|++|.++..                                   ++..+.+
T Consensus       375 L-lhGi~~~~I~~dD~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~  453 (878)
T 3s1s_A          375 L-VSSNNAPTITGEDVCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTE  453 (878)
T ss_dssp             T-CBTTBCCEEECCCGGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHH
T ss_pred             h-hcCCCcceEEecchhcccccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHH
Confidence            0 011223355555655421 12468999999988710                                   2356778


Q ss_pred             ccCCCcEEEEEEcCCC
Q psy7830         223 QLKPNGRIVAPVGNVW  238 (364)
Q Consensus       223 ~LkpGG~Lvi~~~~~~  238 (364)
                      .|++||++++.++...
T Consensus       454 lLKpGGrLAfIlP~s~  469 (878)
T 3s1s_A          454 LVQDGTVISAIMPKQY  469 (878)
T ss_dssp             HSCTTCEEEEEEETHH
T ss_pred             hcCCCcEEEEEEChHH
Confidence            9999999999887753

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.47  E-value=7.6e-07  Score=90.52  Aligned_cols=120  Identities=18%  Similarity=0.057  Sum_probs=90.2

Q ss_pred             CCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----------------eEEEEeCCHHHHHHHHHH
Q psy7830         111 NQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----------------SSVRQLLLPETLNNSLKN  173 (364)
Q Consensus       111 ~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----------------~V~~vDis~~~l~~a~~~  173 (364)
                      .|++-+.+.++..|++.+.  ..++.+|+|.+||||.+...+.+.                 .++|+|+++.+...|+-|
T Consensus       196 ~GqfyTP~~Vv~lmv~l~~--p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mN  273 (530)
T 3ufb_A          196 SGEFYTPRPVVRFMVEVMD--PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMN  273 (530)
T ss_dssp             CCCCCCCHHHHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHH
T ss_pred             CceECCcHHHHHHHHHhhc--cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHH
Confidence            3777777888888888887  678899999999999998766532                 599999999999999998


Q ss_pred             HHhcCCCCCCCCCEEEEEcCCCCCCC----CCCCeeEEEEccChHH----------------------HHHHHHhccC--
Q psy7830         174 IKISRPDLLQSKTLEFILKDARWGHA----EGGPYDVIFFGAGTTE----------------------VSKTILSQLK--  225 (364)
Q Consensus       174 ~~~~~~~~l~~~~v~~~~~D~~~~~~----~~~~fD~Ii~~~~~~~----------------------l~~~l~~~Lk--  225 (364)
                      +--..     .....+..+|....+.    ...+||+|++|.++..                      .+..+.+.||  
T Consensus       274 l~lhg-----~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~  348 (530)
T 3ufb_A          274 LLLHG-----LEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRP  348 (530)
T ss_dssp             HHHHT-----CSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCT
T ss_pred             HHhcC-----CccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhh
Confidence            76522     2344567777654321    1247999999988731                      2355666665  


Q ss_pred             -----CCcEEEEEEcCC
Q psy7830         226 -----PNGRIVAPVGNV  237 (364)
Q Consensus       226 -----pGG~Lvi~~~~~  237 (364)
                           +||++++.++..
T Consensus       349 ~~~l~~gGr~avVlP~g  365 (530)
T 3ufb_A          349 GHGSDNGGRAAVVVPNG  365 (530)
T ss_dssp             TSSSSSCCEEEEEEEHH
T ss_pred             hhccCCCceEEEEecch
Confidence                 799999988764

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.47  E-value=3.8e-07  Score=94.04  Aligned_cols=90  Identities=18%  Similarity=0.138  Sum_probs=66.1

Q ss_pred             CEEEEECCCccHHHHHH---Hcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         136 SRVLDIGSGQGYMATAK---EWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       136 ~~VLDiGcGsG~~a~~l---a~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      ..|||+|||+|.++...   ++.     +|+|||.++ +...+++....|.   .+ ++|+++.+|+++...+ +++|+|
T Consensus       359 ~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~---~~-dkVtVI~gd~eev~LP-EKVDII  432 (637)
T 4gqb_A          359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEE---WG-SQVTVVSSDMREWVAP-EKADII  432 (637)
T ss_dssp             EEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHT---TG-GGEEEEESCTTTCCCS-SCEEEE
T ss_pred             cEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhcc---CC-CeEEEEeCcceeccCC-cccCEE
Confidence            47999999999994333   332     789999998 4556777766643   32 5799999999987553 689999


Q ss_pred             EEccC--------hHHHHHHHHhccCCCcEEE
Q psy7830         208 FFGAG--------TTEVSKTILSQLKPNGRIV  231 (364)
Q Consensus       208 i~~~~--------~~~l~~~l~~~LkpGG~Lv  231 (364)
                      ++-..        ...++....+.|||||+++
T Consensus       433 VSEwMG~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          433 VSELLGSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             ECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence            87321        1235566678999999875

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.46  E-value=2.9e-07  Score=85.07  Aligned_cols=88  Identities=10%  Similarity=0.035  Sum_probs=65.3

Q ss_pred             HHHHHhccCCCC--CEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHh-c-CCCCCC--C-CCEEEEEcCC
Q psy7830         124 CLEQLVDHLQNG--SRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKI-S-RPDLLQ--S-KTLEFILKDA  194 (364)
Q Consensus       124 ~l~~L~~~l~~g--~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~-~-~~~~l~--~-~~v~~~~~D~  194 (364)
                      +++.+.  ++++  .+|||+|||+|..+..++..  +|+++|+++.+++.++++++. . ... ++  . .+++++++|.
T Consensus        78 l~~al~--l~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~-~~~~l~~~i~~~~~D~  154 (258)
T 2oyr_A           78 VAKAVG--IKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAE-IGGWLQERLQLIHASS  154 (258)
T ss_dssp             HHHHTT--CBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTT-THHHHHHHEEEEESCH
T ss_pred             HHHHhc--ccCCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHh-hhhhhhcCEEEEECCH
Confidence            344443  4667  89999999999999999987  999999999988888777654 1 000 11  1 4799999998


Q ss_pred             CCCCCC-CCCeeEEEEccChH
Q psy7830         195 RWGHAE-GGPYDVIFFGAGTT  214 (364)
Q Consensus       195 ~~~~~~-~~~fD~Ii~~~~~~  214 (364)
                      .+.... ..+||+|+++.+++
T Consensus       155 ~~~L~~~~~~fDvV~lDP~y~  175 (258)
T 2oyr_A          155 LTALTDITPRPQVVYLDPMFP  175 (258)
T ss_dssp             HHHSTTCSSCCSEEEECCCCC
T ss_pred             HHHHHhCcccCCEEEEcCCCC
Confidence            764321 24699999998764

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.36  E-value=2.4e-07  Score=85.66  Aligned_cols=109  Identities=15%  Similarity=0.055  Sum_probs=71.4

Q ss_pred             HHHHHHHhc-cCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         122 ARCLEQLVD-HLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       122 a~~l~~L~~-~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      .++++.... .++++.+|||+|||+|.++..++..    .|+++|+.-++....... ..     .+ .++..+..++..
T Consensus        61 ~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~-----~g-~~ii~~~~~~dv  133 (277)
T 3evf_A           61 AKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QS-----LG-WNIITFKDKTDI  133 (277)
T ss_dssp             HHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CB-----TT-GGGEEEECSCCT
T ss_pred             HHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-Cc-----CC-CCeEEEecccee
Confidence            344444433 2578899999999999999987765    788898875431000000 00     11 145556666543


Q ss_pred             CCCCCCCeeEEEEccChH------------HHHHHHHhccCCC-cEEEEEEcCC
Q psy7830         197 GHAEGGPYDVIFFGAGTT------------EVSKTILSQLKPN-GRIVAPVGNV  237 (364)
Q Consensus       197 ~~~~~~~fD~Ii~~~~~~------------~l~~~l~~~LkpG-G~Lvi~~~~~  237 (364)
                      .....++||+|+++.+..            .+++.+.+.|+|| |.+++.+..+
T Consensus       134 ~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~p  187 (277)
T 3evf_A          134 HRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAP  187 (277)
T ss_dssp             TTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred             hhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCC
Confidence            334457899999987443            1446678899999 9999999873

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.34  E-value=8.2e-07  Score=85.99  Aligned_cols=106  Identities=17%  Similarity=0.190  Sum_probs=79.3

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCC---CCCEEEEEcCCCCCCC----CCC
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQ---SKTLEFILKDARWGHA----EGG  202 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~---~~~v~~~~~D~~~~~~----~~~  202 (364)
                      .+..+||-||.|.|..+..+.+.   +|+.||+|+.+++.+++.+........+   .++++++.+|+.....    ..+
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~  283 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR  283 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence            35689999999999999999887   8999999999999999976431100011   2468999999875442    245


Q ss_pred             CeeEEEEccCh----------------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         203 PYDVIFFGAGT----------------TEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       203 ~fD~Ii~~~~~----------------~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      +||+|+++..-                ..+.+.+.+.|+|||+++...+...
T Consensus       284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~  335 (381)
T 3c6k_A          284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVN  335 (381)
T ss_dssp             CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETT
T ss_pred             ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCc
Confidence            79999987321                1245788999999999998765543

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.33  E-value=9e-07  Score=91.50  Aligned_cols=92  Identities=16%  Similarity=0.049  Sum_probs=67.1

Q ss_pred             CCEEEEECCCccHHHH---HH---Hc---------c--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830         135 GSRVLDIGSGQGYMAT---AK---EW---------L--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG  197 (364)
Q Consensus       135 g~~VLDiGcGsG~~a~---~l---a~---------~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~  197 (364)
                      +..|||+|||+|.++.   .+   ++         .  +|+|||.++.++...+.+...+    . .++|+++.+|+++.
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng----~-~d~VtVI~gd~eev  484 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRT----W-KRRVTIIESDMRSL  484 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHT----T-TTCSEEEESCGGGH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcC----C-CCeEEEEeCchhhc
Confidence            4579999999999952   22   23         2  9999999998876666555432    2 24799999999876


Q ss_pred             CCC-----CCCeeEEEEccC--------hHHHHHHHHhccCCCcEEE
Q psy7830         198 HAE-----GGPYDVIFFGAG--------TTEVSKTILSQLKPNGRIV  231 (364)
Q Consensus       198 ~~~-----~~~fD~Ii~~~~--------~~~l~~~l~~~LkpGG~Lv  231 (364)
                      ...     .++.|+|++-..        ...++..+.+.|||||+++
T Consensus       485 ~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          485 PGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             ccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence            541     368999997432        2356667778999999865

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.30  E-value=7.3e-07  Score=74.74  Aligned_cols=97  Identities=13%  Similarity=0.139  Sum_probs=69.5

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCcc-HHHHHHHc-c--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQG-YMATAKEW-L--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR  195 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG-~~a~~la~-~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~  195 (364)
                      |...+.+++.+...++.+|||+|||+| ..+..|++ .  .|+++|++|.+++                    +++.|+.
T Consensus        21 m~e~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~--------------------~v~dDiF   80 (153)
T 2k4m_A           21 MWNDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG--------------------IVRDDIT   80 (153)
T ss_dssp             HHHHHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT--------------------EECCCSS
T ss_pred             HHHHHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc--------------------eEEccCC
Confidence            456677777766777889999999999 59999986 5  8999999976532                    6778887


Q ss_pred             CCCCCC-CCeeEEEEccChHHHHHHHHhccCC-CcEEEEEEcC
Q psy7830         196 WGHAEG-GPYDVIFFGAGTTEVSKTILSQLKP-NGRIVAPVGN  236 (364)
Q Consensus       196 ~~~~~~-~~fD~Ii~~~~~~~l~~~l~~~Lkp-GG~Lvi~~~~  236 (364)
                      +...+. ..||+|++..+-.++.+.+.++-+. |.-+++.-..
T Consensus        81 ~P~~~~Y~~~DLIYsirPP~El~~~i~~lA~~v~adliI~pL~  123 (153)
T 2k4m_A           81 SPRMEIYRGAALIYSIRPPAEIHSSLMRVADAVGARLIIKPLT  123 (153)
T ss_dssp             SCCHHHHTTEEEEEEESCCTTTHHHHHHHHHHHTCEEEEECBT
T ss_pred             CCcccccCCcCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            644321 4899998877766655555544433 6666654433

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.29  E-value=8.6e-07  Score=81.86  Aligned_cols=100  Identities=15%  Similarity=0.066  Sum_probs=68.6

Q ss_pred             CCCCEEEEECCCccHHHHHHHc---------------c-eEEEEeCCH---HHHH-----------HHHHHHHhcCCC--
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEW---------------L-SSVRQLLLP---ETLN-----------NSLKNIKISRPD--  180 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~---------------~-~V~~vDis~---~~l~-----------~a~~~~~~~~~~--  180 (364)
                      +++.+|||+|+|+|+.++.+++               . +++++|.+|   +.+.           .+++++......  
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            3557999999999998876432               2 899999987   4433           555555431000  


Q ss_pred             -----CC--CCCCEEEEEcCCCCCCCC-C----CCeeEEEEccCh---------HHHHHHHHhccCCCcEEEE
Q psy7830         181 -----LL--QSKTLEFILKDARWGHAE-G----GPYDVIFFGAGT---------TEVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       181 -----~l--~~~~v~~~~~D~~~~~~~-~----~~fD~Ii~~~~~---------~~l~~~l~~~LkpGG~Lvi  232 (364)
                           .+  +..+++++.+|+.+..+. .    ..||+|+.+...         ..+++.+.++|+|||+|+.
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t  211 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT  211 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred             chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence                 01  123688999998764332 1    279999997522         3578899999999999985

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.26  E-value=4e-06  Score=78.34  Aligned_cols=97  Identities=7%  Similarity=0.021  Sum_probs=73.5

Q ss_pred             CCCCEEEEECCCccHHHHHHHc--------c-eEEEEeCCHH--------------------------HHHHHHHHHHhc
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEW--------L-SSVRQLLLPE--------------------------TLNNSLKNIKIS  177 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~--------~-~V~~vDis~~--------------------------~l~~a~~~~~~~  177 (364)
                      ....+|||+|+..|+.++.++.        . +|+++|..+.                          .++.+++|+++.
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            3456999999999999988753        2 7999996421                          467789999882


Q ss_pred             CCCCCCCCCEEEEEcCCCCCCCC--CCCeeEEEEccChH----HHHHHHHhccCCCcEEEE
Q psy7830         178 RPDLLQSKTLEFILKDARWGHAE--GGPYDVIFFGAGTT----EVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       178 ~~~~l~~~~v~~~~~D~~~~~~~--~~~fD~Ii~~~~~~----~l~~~l~~~LkpGG~Lvi  232 (364)
                      .   +..++|+++.+|+.+..+.  .++||+|+.++...    ..++.+...|+|||++++
T Consensus       185 g---l~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv~  242 (282)
T 2wk1_A          185 D---LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVIV  242 (282)
T ss_dssp             T---CCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             C---CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEEEE
Confidence            2   2126899999998764432  36899999998762    357889999999999886

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.26  E-value=1e-06  Score=81.97  Aligned_cols=87  Identities=16%  Similarity=0.123  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC
Q psy7830         118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR  195 (364)
Q Consensus       118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~  195 (364)
                      |-+...+++.|.  ++++..++|.+||.|..+..+++.  +|+|+|.|+.+++.|++ +..        ++++++.++..
T Consensus         8 pVLl~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~-L~~--------~rv~lv~~~f~   76 (285)
T 1wg8_A            8 PVLYQEALDLLA--VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG-LHL--------PGLTVVQGNFR   76 (285)
T ss_dssp             CTTHHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-TCC--------TTEEEEESCGG
T ss_pred             hHHHHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hcc--------CCEEEEECCcc
Confidence            337788999997  789999999999999999999987  99999999999999998 633        48999999987


Q ss_pred             CCCC-----CCCCeeEEEEccChHH
Q psy7830         196 WGHA-----EGGPYDVIFFGAGTTE  215 (364)
Q Consensus       196 ~~~~-----~~~~fD~Ii~~~~~~~  215 (364)
                      ++..     ..+++|.|+++..+..
T Consensus        77 ~l~~~L~~~g~~~vDgIL~DLGvSS  101 (285)
T 1wg8_A           77 HLKRHLAALGVERVDGILADLGVSS  101 (285)
T ss_dssp             GHHHHHHHTTCSCEEEEEEECSCCH
T ss_pred             hHHHHHHHcCCCCcCEEEeCCcccc
Confidence            6421     1247999999877654

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.19  E-value=7e-07  Score=82.69  Aligned_cols=108  Identities=16%  Similarity=0.051  Sum_probs=69.7

Q ss_pred             HHHHHHHhcc-CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         122 ARCLEQLVDH-LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       122 a~~l~~L~~~-l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      .++++....+ ++++++|||+|||+|.++..++..    .|+|+|+...+...+... ..     .+ .++.....++..
T Consensus        77 fKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~-----~g-~~ii~~~~~~dv  149 (282)
T 3gcz_A           77 AKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TT-----LG-WNLIRFKDKTDV  149 (282)
T ss_dssp             HHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CB-----TT-GGGEEEECSCCG
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-cc-----CC-CceEEeeCCcch
Confidence            4444444433 578999999999999999988864    889999986532211100 00     11 133333433222


Q ss_pred             CCCCCCCeeEEEEccChH------------HHHHHHHhccCCC--cEEEEEEcC
Q psy7830         197 GHAEGGPYDVIFFGAGTT------------EVSKTILSQLKPN--GRIVAPVGN  236 (364)
Q Consensus       197 ~~~~~~~fD~Ii~~~~~~------------~l~~~l~~~LkpG--G~Lvi~~~~  236 (364)
                      ......++|+|+++.+..            .++.-+.+.|+||  |.+|+-+..
T Consensus       150 ~~l~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~  203 (282)
T 3gcz_A          150 FNMEVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC  203 (282)
T ss_dssp             GGSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred             hhcCCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence            222346899999987643            1455667899999  999998877

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.14  E-value=6.7e-06  Score=79.32  Aligned_cols=83  Identities=12%  Similarity=0.017  Sum_probs=62.8

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF  209 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~  209 (364)
                      +++|++|||+||++|++|..++++  +|+|||+.+-.     ..+..       .++|+++.+|+....+..++||+|+|
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~-----~~l~~-------~~~V~~~~~d~~~~~~~~~~~D~vvs  276 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMA-----QSLMD-------TGQVTWLREDGFKFRPTRSNISWMVC  276 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCC-----HHHHT-------TTCEEEECSCTTTCCCCSSCEEEEEE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcC-----hhhcc-------CCCeEEEeCccccccCCCCCcCEEEE
Confidence            679999999999999999999988  99999986421     11211       36899999999887766678999999


Q ss_pred             ccChH--HHHHHHHhccCC
Q psy7830         210 GAGTT--EVSKTILSQLKP  226 (364)
Q Consensus       210 ~~~~~--~l~~~l~~~Lkp  226 (364)
                      +....  .+...+.+.|..
T Consensus       277 Dm~~~p~~~~~l~~~wl~~  295 (375)
T 4auk_A          277 DMVEKPAKVAALMAQWLVN  295 (375)
T ss_dssp             CCSSCHHHHHHHHHHHHHT
T ss_pred             cCCCChHHhHHHHHHHHhc
Confidence            98774  344444444433

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.14  E-value=4.3e-06  Score=79.51  Aligned_cols=85  Identities=15%  Similarity=0.078  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830         118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK  192 (364)
Q Consensus       118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~  192 (364)
                      |-+...+++.|.  +++|..++|..||.|..+..+++.     +|+|+|.|+++++.++ ++        ..++++++.+
T Consensus        43 pVLl~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--------~~~Rv~lv~~  111 (347)
T 3tka_A           43 TVLLDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--------DDPRFSIIHG  111 (347)
T ss_dssp             CTTTHHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--------CCTTEEEEES
T ss_pred             cccHHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--------cCCcEEEEeC
Confidence            337788899887  789999999999999999999876     8999999999999984 43        1358999999


Q ss_pred             CCCCCC---CC---CCCeeEEEEccCh
Q psy7830         193 DARWGH---AE---GGPYDVIFFGAGT  213 (364)
Q Consensus       193 D~~~~~---~~---~~~fD~Ii~~~~~  213 (364)
                      +..++.   ..   .+++|.|+.+..+
T Consensus       112 nF~~l~~~L~~~g~~~~vDgILfDLGV  138 (347)
T 3tka_A          112 PFSALGEYVAERDLIGKIDGILLDLGV  138 (347)
T ss_dssp             CGGGHHHHHHHTTCTTCEEEEEEECSC
T ss_pred             CHHHHHHHHHhcCCCCcccEEEECCcc
Confidence            876542   11   1369999887554

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.96  E-value=2.1e-05  Score=73.85  Aligned_cols=57  Identities=19%  Similarity=0.171  Sum_probs=49.9

Q ss_pred             hHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHh
Q psy7830         117 PPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKI  176 (364)
Q Consensus       117 ~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~  176 (364)
                      .+.++..+++...   .+|+.|||++||+|..+..++.+  +++|+|+++.+++.|++|+..
T Consensus       221 p~~l~~~~i~~~~---~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~  279 (297)
T 2zig_A          221 PLELAERLVRMFS---FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFAR  279 (297)
T ss_dssp             CHHHHHHHHHHHC---CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhC---CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHH
Confidence            3466777777654   68999999999999999999888  999999999999999999876

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.96  E-value=8.4e-06  Score=75.95  Aligned_cols=98  Identities=20%  Similarity=0.169  Sum_probs=64.6

Q ss_pred             cCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc-CCCCCCCCCCCee
Q psy7830         131 HLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK-DARWGHAEGGPYD  205 (364)
Q Consensus       131 ~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~-D~~~~~~~~~~fD  205 (364)
                      .++++.+|||+||++|.++..+++.    .|+|+|+...+...... ...     .+.+-+.+..+ |+..  ....++|
T Consensus        78 l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~-----~~~~iv~~~~~~di~~--l~~~~~D  149 (300)
T 3eld_A           78 YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQT-----LGWNIVKFKDKSNVFT--MPTEPSD  149 (300)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCB-----TTGGGEEEECSCCTTT--SCCCCCS
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccc-----cCCceEEeecCceeee--cCCCCcC
Confidence            4678999999999999999999975    78999997542110000 000     11112333322 3322  2346899


Q ss_pred             EEEEccChH------------HHHHHHHhccCCC-cEEEEEEcC
Q psy7830         206 VIFFGAGTT------------EVSKTILSQLKPN-GRIVAPVGN  236 (364)
Q Consensus       206 ~Ii~~~~~~------------~l~~~l~~~LkpG-G~Lvi~~~~  236 (364)
                      +|+++.+..            .++.-+.+.|+|| |.+|+-+..
T Consensus       150 lVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~  193 (300)
T 3eld_A          150 TLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA  193 (300)
T ss_dssp             EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred             EEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence            999986643            2456667899999 999999987

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.74  E-value=0.00013  Score=70.96  Aligned_cols=97  Identities=12%  Similarity=-0.072  Sum_probs=63.8

Q ss_pred             CCEEEEECCCccHHHHHHHcc---------------------eEEEEeCC-----------HHHHHHHHHHHHhcCCCCC
Q psy7830         135 GSRVLDIGSGQGYMATAKEWL---------------------SSVRQLLL-----------PETLNNSLKNIKISRPDLL  182 (364)
Q Consensus       135 g~~VLDiGcGsG~~a~~la~~---------------------~V~~vDis-----------~~~l~~a~~~~~~~~~~~l  182 (364)
                      ..+|+|+||++|..|..+...                     +|+..|+-           +.+.+.+++....      
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~------  126 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGR------  126 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCC------
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccC------
Confidence            478999999999988765422                     56677766           4444433222110      


Q ss_pred             CCCCEEEEEcCCCC---CCCCCCCeeEEEEccChHHH-------------------------------------------
Q psy7830         183 QSKTLEFILKDARW---GHAEGGPYDVIFFGAGTTEV-------------------------------------------  216 (364)
Q Consensus       183 ~~~~v~~~~~D~~~---~~~~~~~fD~Ii~~~~~~~l-------------------------------------------  216 (364)
                       ..+..|+.+....   -.++.+++|+|+++..+||+                                           
T Consensus       127 -~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~  205 (384)
T 2efj_A          127 -KIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFT  205 (384)
T ss_dssp             -CTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHH
T ss_pred             -CCCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHH
Confidence             1134566655433   34456899999999988773                                           


Q ss_pred             --HHHHHhccCCCcEEEEEEcCCC
Q psy7830         217 --SKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       217 --~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                        ++...+.|+|||++++.+...+
T Consensus       206 ~FL~~Ra~eL~pGG~mvl~~~gr~  229 (384)
T 2efj_A          206 TFLRIHSEELISRGRMLLTFICKE  229 (384)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             HHHHHHHHHhccCCeEEEEEecCC
Confidence              1222789999999999997654

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.74  E-value=2.1e-05  Score=70.81  Aligned_cols=108  Identities=16%  Similarity=0.085  Sum_probs=74.4

Q ss_pred             HHHHHHHhc-cCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc-CCC
Q psy7830         122 ARCLEQLVD-HLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK-DAR  195 (364)
Q Consensus       122 a~~l~~L~~-~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~-D~~  195 (364)
                      .++.+.... .++++++|||+||++|.++..++..    +|+|+|+-..-.+.      -..-..++-+.++|..+ |+.
T Consensus        65 ~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~------P~~~~s~gwn~v~fk~gvDv~  138 (267)
T 3p8z_A           65 AKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEE------PVPMSTYGWNIVKLMSGKDVF  138 (267)
T ss_dssp             HHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC------CCCCCCTTTTSEEEECSCCGG
T ss_pred             HHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccC------cchhhhcCcCceEEEecccee
Confidence            444444432 2679999999999999999987776    89999987542210      00001144468999999 976


Q ss_pred             CCCCCCCCeeEEEEccChH------------HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         196 WGHAEGGPYDVIFFGAGTT------------EVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       196 ~~~~~~~~fD~Ii~~~~~~------------~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      ...+  .++|.|+|+..-.            .+++.+.+.|++ |.+++-+..+.
T Consensus       139 ~~~~--~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py  190 (267)
T 3p8z_A          139 YLPP--EKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPY  190 (267)
T ss_dssp             GCCC--CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCC
T ss_pred             ecCC--ccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCC
Confidence            5544  5799999986531            145566788988 78888887665

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.72  E-value=8.1e-05  Score=72.21  Aligned_cols=102  Identities=9%  Similarity=-0.011  Sum_probs=63.7

Q ss_pred             CCEEEEECCCccHHHHHHHcc-------------------eEEEEeCCHHHHHHHHHHHHhcCCCCC--------CCCCE
Q psy7830         135 GSRVLDIGSGQGYMATAKEWL-------------------SSVRQLLLPETLNNSLKNIKISRPDLL--------QSKTL  187 (364)
Q Consensus       135 g~~VLDiGcGsG~~a~~la~~-------------------~V~~vDis~~~l~~a~~~~~~~~~~~l--------~~~~v  187 (364)
                      ..+|+|+|||+|..|..+...                   +|+..|+-.......=+.+..... .+        ...+-
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~-~~~~~~~~~~~~~~~  131 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVS-NTCMEECLAADGNRS  131 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCC-CC--CCC---CCCBC
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhh-hcchhhhccccCCCc
Confidence            478999999999999877321                   667777666555444333332100 00        00011


Q ss_pred             EEEEc---CCCCCCCCCCCeeEEEEccChHHH--------------------------------------------HHHH
Q psy7830         188 EFILK---DARWGHAEGGPYDVIFFGAGTTEV--------------------------------------------SKTI  220 (364)
Q Consensus       188 ~~~~~---D~~~~~~~~~~fD~Ii~~~~~~~l--------------------------------------------~~~l  220 (364)
                      .|..+   ....-.++.++||+|+++..+||+                                            ++..
T Consensus       132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r  211 (374)
T 3b5i_A          132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR  211 (374)
T ss_dssp             SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222   222233446899999999888763                                            3455


Q ss_pred             HhccCCCcEEEEEEcCC
Q psy7830         221 LSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       221 ~~~LkpGG~Lvi~~~~~  237 (364)
                      .+.|+|||++++++...
T Consensus       212 a~eL~pGG~mvl~~~gr  228 (374)
T 3b5i_A          212 AAEVKRGGAMFLVCLGR  228 (374)
T ss_dssp             HHHEEEEEEEEEEEEEC
T ss_pred             HHHhCCCCEEEEEEecC
Confidence            89999999999998754

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.66  E-value=0.00012  Score=67.99  Aligned_cols=109  Identities=12%  Similarity=0.050  Sum_probs=73.4

Q ss_pred             HHHHHHHhc-cCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc-CCC
Q psy7830         122 ARCLEQLVD-HLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK-DAR  195 (364)
Q Consensus       122 a~~l~~L~~-~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~-D~~  195 (364)
                      .++.+.... .++++++|||+||++|.++..++..    +|+|+|+-..-.+.=+ ..+.     ++-..|.+..+ |+.
T Consensus        81 ~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~q-----l~w~lV~~~~~~Dv~  154 (321)
T 3lkz_A           81 AKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQS-----YGWNIVTMKSGVDVF  154 (321)
T ss_dssp             HHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCB-----TTGGGEEEECSCCTT
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhh-----cCCcceEEEeccCHh
Confidence            444444432 2578999999999999999977776    8999998754110000 0001     22235888887 876


Q ss_pred             CCCCCCCCeeEEEEccChH------------HHHHHHHhccCCC-cEEEEEEcCCC
Q psy7830         196 WGHAEGGPYDVIFFGAGTT------------EVSKTILSQLKPN-GRIVAPVGNVW  238 (364)
Q Consensus       196 ~~~~~~~~fD~Ii~~~~~~------------~l~~~l~~~LkpG-G~Lvi~~~~~~  238 (364)
                      ...+  .++|+|+|+..-.            .+++.+.+.|++| |-+++-+..+.
T Consensus       155 ~l~~--~~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY  208 (321)
T 3lkz_A          155 YRPS--ECCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPY  208 (321)
T ss_dssp             SSCC--CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred             hCCC--CCCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCC
Confidence            6654  5699999986521            1455566788888 89999988874

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.65  E-value=0.0001  Score=67.22  Aligned_cols=108  Identities=10%  Similarity=0.054  Sum_probs=67.5

Q ss_pred             HHHHHHHhc-cCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc-CCC
Q psy7830         122 ARCLEQLVD-HLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK-DAR  195 (364)
Q Consensus       122 a~~l~~L~~-~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~-D~~  195 (364)
                      .++++.-.. .+++|++|+|+||++|..+..+++.    .|.|.++..+. . . .-.....   .+..-+.+..+ |+.
T Consensus        60 yKL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~-~P~~~~~---~Gv~~i~~~~G~Df~  133 (269)
T 2px2_A           60 AKLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-E-EPMLMQS---YGWNIVTMKSGVDVF  133 (269)
T ss_dssp             HHHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-C-CCCCCCS---TTGGGEEEECSCCGG
T ss_pred             HHHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-c-CCCcccC---CCceEEEeeccCCcc
Confidence            444444433 3689999999999999999999886    44555554331 0 0 0000000   00112355557 987


Q ss_pred             CCCCCCCCeeEEEEccChH------------HHHHHHHhccCCCc-EEEEEEcCC
Q psy7830         196 WGHAEGGPYDVIFFGAGTT------------EVSKTILSQLKPNG-RIVAPVGNV  237 (364)
Q Consensus       196 ~~~~~~~~fD~Ii~~~~~~------------~l~~~l~~~LkpGG-~Lvi~~~~~  237 (364)
                      +..  ..++|+|+|+.+-.            ..+.-+.+.|+||| .+++-+...
T Consensus       134 ~~~--~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg  186 (269)
T 2px2_A          134 YKP--SEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP  186 (269)
T ss_dssp             GSC--CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred             CCC--CCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence            643  35799999987431            13455668999999 999888775

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.51  E-value=0.0002  Score=65.72  Aligned_cols=57  Identities=21%  Similarity=0.165  Sum_probs=49.8

Q ss_pred             hHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHh
Q psy7830         117 PPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKI  176 (364)
Q Consensus       117 ~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~  176 (364)
                      .+.++..+++...   .+|+.|||..||+|..+.++.++  +++|+|+++..++.+++|+..
T Consensus       198 p~~l~~~~i~~~~---~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~  256 (260)
T 1g60_A          198 PRDLIERIIRASS---NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQ  256 (260)
T ss_dssp             CHHHHHHHHHHHC---CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHhC---CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHh
Confidence            3566777777653   78999999999999999998888  999999999999999999876

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.49  E-value=0.00024  Score=68.27  Aligned_cols=74  Identities=14%  Similarity=0.044  Sum_probs=62.7

Q ss_pred             ccChHHHHHHHHHHHhccCC------CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCC
Q psy7830         114 VMEPPSYIARCLEQLVDHLQ------NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQ  183 (364)
Q Consensus       114 ~~s~P~~~a~~l~~L~~~l~------~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~  183 (364)
                      ++..|.++.++++.+.  +.      +++.|||||.|.|.+|..|+..    +|+++|+|+.++...++.. .       
T Consensus        34 FL~d~~i~~~Iv~~~~--l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~-------  103 (353)
T 1i4w_A           34 YLWNPTVYNKIFDKLD--LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E-------  103 (353)
T ss_dssp             CBCCHHHHHHHHHHHC--GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T-------
T ss_pred             ccCCHHHHHHHHHhcc--CCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c-------
Confidence            5678899999999986  44      3689999999999999999863    8999999999999988876 2       


Q ss_pred             CCCEEEEEcCCCCC
Q psy7830         184 SKTLEFILKDARWG  197 (364)
Q Consensus       184 ~~~v~~~~~D~~~~  197 (364)
                      .++++++.+|+...
T Consensus       104 ~~~l~ii~~D~l~~  117 (353)
T 1i4w_A          104 GSPLQILKRDPYDW  117 (353)
T ss_dssp             TSSCEEECSCTTCH
T ss_pred             CCCEEEEECCccch
Confidence            25899999998643

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.39  E-value=0.00015  Score=69.79  Aligned_cols=99  Identities=14%  Similarity=0.073  Sum_probs=68.1

Q ss_pred             CCEEEEECCCccHHHHHHHc-----------------c---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC
Q psy7830         135 GSRVLDIGSGQGYMATAKEW-----------------L---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA  194 (364)
Q Consensus       135 g~~VLDiGcGsG~~a~~la~-----------------~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~  194 (364)
                      ..+|+|+||++|..|..+..                 .   .|+..|+-......+-+.+....    ...+..|+.+..
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~----~~~~~~f~~gvp  127 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN----DVDGVCFINGVP  127 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC----SCTTCEEEEEEE
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc----ccCCCEEEEecc
Confidence            36799999999987754321                 1   78888988888877766654310    001234544443


Q ss_pred             ---CCCCCCCCCeeEEEEccChHHH---------------------------------------HHHHHhccCCCcEEEE
Q psy7830         195 ---RWGHAEGGPYDVIFFGAGTTEV---------------------------------------SKTILSQLKPNGRIVA  232 (364)
Q Consensus       195 ---~~~~~~~~~fD~Ii~~~~~~~l---------------------------------------~~~l~~~LkpGG~Lvi  232 (364)
                         ..-.++.+++|+|+++..+||+                                       ++...+.|+|||++|+
T Consensus       128 gSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl  207 (359)
T 1m6e_X          128 GSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL  207 (359)
T ss_dssp             SCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred             hhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence               3344556899999999888763                                       3444889999999999


Q ss_pred             EEcCC
Q psy7830         233 PVGNV  237 (364)
Q Consensus       233 ~~~~~  237 (364)
                      .+...
T Consensus       208 ~~~gr  212 (359)
T 1m6e_X          208 TILGR  212 (359)
T ss_dssp             EEEEC
T ss_pred             EEecC
Confidence            88654

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=97.23  E-value=0.00011  Score=68.18  Aligned_cols=103  Identities=17%  Similarity=0.097  Sum_probs=76.7

Q ss_pred             HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC
Q psy7830         121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH  198 (364)
Q Consensus       121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~  198 (364)
                      ....++.+.. + .+..+||+-+|||.+++.+...  +++.+|.++..++..++|++.       .++++++..|+....
T Consensus        80 l~~yf~~l~~-~-n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~-------~~~~~V~~~D~~~~L  150 (283)
T 2oo3_A           80 FLEYISVIKQ-I-NLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHF-------NKKVYVNHTDGVSKL  150 (283)
T ss_dssp             GHHHHHHHHH-H-SSSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCT-------TSCEEEECSCHHHHH
T ss_pred             HHHHHHHHHH-h-cCCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCc-------CCcEEEEeCcHHHHH
Confidence            3455555553 2 3567999999999999998877  999999999999999998855       257999999975421


Q ss_pred             ----CCCCCeeEEEEccChH------HHHHHHHh--ccCCCcEEEE
Q psy7830         199 ----AEGGPYDVIFFGAGTT------EVSKTILS--QLKPNGRIVA  232 (364)
Q Consensus       199 ----~~~~~fD~Ii~~~~~~------~l~~~l~~--~LkpGG~Lvi  232 (364)
                          +...+||+|+++.++.      .+++.+.+  .+.++|++++
T Consensus       151 ~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~  196 (283)
T 2oo3_A          151 NALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCV  196 (283)
T ss_dssp             HHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             HHhcCCCCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEE
Confidence                2235799999999886      23333333  4568998876

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=96.84  E-value=0.0018  Score=62.73  Aligned_cols=69  Identities=19%  Similarity=0.150  Sum_probs=55.6

Q ss_pred             CEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC--------CCCCe
Q psy7830         136 SRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA--------EGGPY  204 (364)
Q Consensus       136 ~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~--------~~~~f  204 (364)
                      .+|+|+.||.|.++..+...   .|.++|+++.+++..+.|.          ++..++.+|+.+...        ....+
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~----------~~~~~~~~DI~~~~~~~~~~~~~~~~~~   72 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINF----------PRSLHVQEDVSLLNAEIIKGFFKNDMPI   72 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHC----------TTSEEECCCGGGCCHHHHHHHHCSCCCC
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhC----------CCCceEecChhhcCHHHHHhhcccCCCe
Confidence            58999999999999888776   7789999999998888875          356678888876532        13579


Q ss_pred             eEEEEccChH
Q psy7830         205 DVIFFGAGTT  214 (364)
Q Consensus       205 D~Ii~~~~~~  214 (364)
                      |+|+.+.+|+
T Consensus        73 D~i~ggpPCQ   82 (376)
T 3g7u_A           73 DGIIGGPPCQ   82 (376)
T ss_dssp             CEEEECCCCC
T ss_pred             eEEEecCCCC
Confidence            9999998874

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.83  E-value=0.0021  Score=61.07  Aligned_cols=87  Identities=21%  Similarity=0.140  Sum_probs=64.2

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      +++|++||-+|+|. |..+..+++.   +|+++|.+++.++.+++         ++.+.+  + .|....   ...+|+|
T Consensus       174 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~---------lGa~~v--~-~~~~~~---~~~~D~v  238 (348)
T 3two_A          174 VTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS---------MGVKHF--Y-TDPKQC---KEELDFI  238 (348)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH---------TTCSEE--E-SSGGGC---CSCEEEE
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh---------cCCCee--c-CCHHHH---hcCCCEE
Confidence            78999999999876 7777777776   99999999998888765         222222  2 332222   1279999


Q ss_pred             EEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         208 FFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       208 i~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +-............+.|++||++++.
T Consensus       239 id~~g~~~~~~~~~~~l~~~G~iv~~  264 (348)
T 3two_A          239 ISTIPTHYDLKDYLKLLTYNGDLALV  264 (348)
T ss_dssp             EECCCSCCCHHHHHTTEEEEEEEEEC
T ss_pred             EECCCcHHHHHHHHHHHhcCCEEEEE
Confidence            97766555677888999999999874

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=96.81  E-value=0.0023  Score=59.42  Aligned_cols=88  Identities=17%  Similarity=0.091  Sum_probs=60.5

Q ss_pred             CCCCEEEEECC------CccHHHHH-HHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCC
Q psy7830         133 QNGSRVLDIGS------GQGYMATA-KEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGP  203 (364)
Q Consensus       133 ~~g~~VLDiGc------GsG~~a~~-la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~  203 (364)
                      ..|++|||+|+      .+|..... +...  .|+++|+.+-..                ..+ .++++|+..... ..+
T Consensus       108 p~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s----------------da~-~~IqGD~~~~~~-~~k  169 (344)
T 3r24_A          108 PYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS----------------DAD-STLIGDCATVHT-ANK  169 (344)
T ss_dssp             CTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC----------------SSS-EEEESCGGGEEE-SSC
T ss_pred             cCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc----------------CCC-eEEEcccccccc-CCC
Confidence            56899999996      77774222 2222  799999975321                123 449999765433 478


Q ss_pred             eeEEEEccCh-----------------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         204 YDVIFFGAGT-----------------TEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       204 fD~Ii~~~~~-----------------~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      ||+|+++...                 +.++.-+.+.|+|||.+++-+....
T Consensus       170 ~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGs  221 (344)
T 3r24_A          170 WDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS  221 (344)
T ss_dssp             EEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS
T ss_pred             CCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCC
Confidence            9999997543                 2245567789999999999886655

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.79  E-value=0.0045  Score=58.92  Aligned_cols=92  Identities=17%  Similarity=0.207  Sum_probs=63.8

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC------CC-
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH------AE-  200 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~------~~-  200 (364)
                      +++|++||-+|+|. |..+..+++.   +|+++|.+++.++.+++         ++.+.+ +...|..+..      .. 
T Consensus       166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~---------lGa~~~-~~~~~~~~~~~~i~~~~~~  235 (352)
T 1e3j_A          166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN---------CGADVT-LVVDPAKEEESSIIERIRS  235 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---------TTCSEE-EECCTTTSCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH---------hCCCEE-EcCcccccHHHHHHHHhcc
Confidence            78999999999875 6677777765   89999999998888764         222211 1111101110      00 


Q ss_pred             --CCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         201 --GGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       201 --~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                        ...+|+|+-............+.|++||++++.
T Consensus       236 ~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~  270 (352)
T 1e3j_A          236 AIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLV  270 (352)
T ss_dssp             HSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEEC
T ss_pred             ccCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence              246999998877666778889999999998863

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.78  E-value=0.0078  Score=57.65  Aligned_cols=91  Identities=15%  Similarity=0.143  Sum_probs=64.6

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC---C--CCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG---H--AEG  201 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~---~--~~~  201 (364)
                      +++|++||-+|||. |.++..+++.    +|+++|.+++.++.+++.         +.+.  ++..+..+.   .  ...
T Consensus       188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l---------Ga~~--vi~~~~~~~~~~~~~~~~  256 (371)
T 1f8f_A          188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL---------GATH--VINSKTQDPVAAIKEITD  256 (371)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH---------TCSE--EEETTTSCHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc---------CCCE--EecCCccCHHHHHHHhcC
Confidence            68999999999986 7777787775    599999999998888653         1111  121111110   0  012


Q ss_pred             CCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +.+|+|+-.......+....+.|++||++++.
T Consensus       257 gg~D~vid~~g~~~~~~~~~~~l~~~G~iv~~  288 (371)
T 1f8f_A          257 GGVNFALESTGSPEILKQGVDALGILGKIAVV  288 (371)
T ss_dssp             SCEEEEEECSCCHHHHHHHHHTEEEEEEEEEC
T ss_pred             CCCcEEEECCCCHHHHHHHHHHHhcCCEEEEe
Confidence            37999998777667788899999999998863

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.74  E-value=0.0025  Score=60.80  Aligned_cols=91  Identities=15%  Similarity=0.134  Sum_probs=64.0

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC---CCCC---CC-
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD---ARWG---HA-  199 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D---~~~~---~~-  199 (364)
                      +++|++||-+|+|. |.++..+++.    +|+++|.+++.++.+++         ++.+.  ++..+   ..+.   .. 
T Consensus       169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~---------lGa~~--vi~~~~~~~~~~~~~i~~  237 (356)
T 1pl8_A          169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE---------IGADL--VLQISKESPQEIARKVEG  237 (356)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH---------TTCSE--EEECSSCCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH---------hCCCE--EEcCcccccchHHHHHHH
Confidence            78999999999876 7777777765    79999999998888764         22221  22211   0000   00 


Q ss_pred             -CCCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         200 -EGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       200 -~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                       ....+|+|+-............+.|++||++++.
T Consensus       238 ~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~  272 (356)
T 1pl8_A          238 QLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLV  272 (356)
T ss_dssp             HHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEEC
T ss_pred             HhCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEE
Confidence             0146999998877666778889999999998863

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.51  E-value=0.0019  Score=62.69  Aligned_cols=89  Identities=20%  Similarity=0.125  Sum_probs=62.5

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC-C------C
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG-H------A  199 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~-~------~  199 (364)
                      +++|++||.+|||. |.++..+++.    +|+++|.+++.++.+++         ++.   .++..+..+. .      .
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~---------lGa---~~i~~~~~~~~~~~~~~~~  250 (398)
T 2dph_A          183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD---------AGF---ETIDLRNSAPLRDQIDQIL  250 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT---------TTC---EEEETTSSSCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH---------cCC---cEEcCCCcchHHHHHHHHh
Confidence            78999999999987 7788888775    79999999998887753         222   2222211111 0      0


Q ss_pred             CCCCeeEEEEccChH--------------HHHHHHHhccCCCcEEEE
Q psy7830         200 EGGPYDVIFFGAGTT--------------EVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       200 ~~~~fD~Ii~~~~~~--------------~l~~~l~~~LkpGG~Lvi  232 (364)
                      ....||+|+-.....              ..+....+.|++||++++
T Consensus       251 ~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~  297 (398)
T 2dph_A          251 GKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGI  297 (398)
T ss_dssp             SSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEEC
T ss_pred             CCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEE
Confidence            122699998766543              267888999999999875

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=96.45  E-value=0.005  Score=58.46  Aligned_cols=70  Identities=16%  Similarity=-0.010  Sum_probs=54.7

Q ss_pred             CCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC-CCCeeEEEE
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE-GGPYDVIFF  209 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD~Ii~  209 (364)
                      .+.+|+|+.||.|.++..+...   .|.++|+++.+++..+.|...         ..   .+|+...... ...+|+|+.
T Consensus        10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~---------~~---~~Di~~~~~~~~~~~D~l~~   77 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE---------KP---EGDITQVNEKTIPDHDILCA   77 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC---------CC---BSCGGGSCGGGSCCCSEEEE
T ss_pred             CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCC---------CC---cCCHHHcCHhhCCCCCEEEE
Confidence            3578999999999999988777   788999999999999988743         11   5777665432 236999999


Q ss_pred             ccChHH
Q psy7830         210 GAGTTE  215 (364)
Q Consensus       210 ~~~~~~  215 (364)
                      +.+|+.
T Consensus        78 gpPCQ~   83 (327)
T 2c7p_A           78 GFPCQA   83 (327)
T ss_dssp             ECCCTT
T ss_pred             CCCCCC
Confidence            888753

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.44  E-value=0.018  Score=55.15  Aligned_cols=93  Identities=19%  Similarity=0.163  Sum_probs=64.3

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEcCCCCCC-----CC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILKDARWGH-----AE  200 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~D~~~~~-----~~  200 (364)
                      +++|++||-+|+|. |.+++.+++.    +|+++|.+++..+.+++.         +.+.+ .....|..+..     ..
T Consensus       180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l---------Ga~~vi~~~~~~~~~~i~~~~~~~  250 (370)
T 4ej6_A          180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV---------GATATVDPSAGDVVEAIAGPVGLV  250 (370)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH---------TCSEEECTTSSCHHHHHHSTTSSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc---------CCCEEECCCCcCHHHHHHhhhhcc
Confidence            78999999999876 6777777765    799999999998887762         11111 00011110000     11


Q ss_pred             CCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         201 GGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      .+.+|+|+-............+.|++||++++.
T Consensus       251 ~gg~Dvvid~~G~~~~~~~~~~~l~~~G~vv~~  283 (370)
T 4ej6_A          251 PGGVDVVIECAGVAETVKQSTRLAKAGGTVVIL  283 (370)
T ss_dssp             TTCEEEEEECSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            247999998777677788899999999998863

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=96.43  E-value=0.0088  Score=57.08  Aligned_cols=93  Identities=14%  Similarity=0.075  Sum_probs=66.3

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc---e-EEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc-----CCCCC---C
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL---S-SVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK-----DARWG---H  198 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~---~-V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~-----D~~~~---~  198 (364)
                      +++|++||-+|+|. |.+++.+++.   + |+++|.+++.++.+++. ..        .-+.+...     |..+.   .
T Consensus       177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~--------~~~~~~~~~~~~~~~~~~v~~~  247 (363)
T 3m6i_A          177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP--------EVVTHKVERLSAEESAKKIVES  247 (363)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT--------TCEEEECCSCCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch--------hcccccccccchHHHHHHHHHH
Confidence            78999999999876 6777777776   4 99999999999999875 22        12222211     11000   0


Q ss_pred             CCCCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         199 AEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       199 ~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      .....+|+|+-.......+....+.|++||++++.
T Consensus       248 t~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~  282 (363)
T 3m6i_A          248 FGGIEPAVALECTGVESSIAAAIWAVKFGGKVFVI  282 (363)
T ss_dssp             TSSCCCSEEEECSCCHHHHHHHHHHSCTTCEEEEC
T ss_pred             hCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEE
Confidence            11347999998777776788899999999998864

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=96.42  E-value=0.0023  Score=61.13  Aligned_cols=70  Identities=19%  Similarity=0.070  Sum_probs=53.3

Q ss_pred             CEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCC---CCeeEE
Q psy7830         136 SRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEG---GPYDVI  207 (364)
Q Consensus       136 ~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~---~~fD~I  207 (364)
                      .+|+|+.||.|.++..+...     .|.++|+++.+++..+.|..          +..++.+|+.......   ..+|+|
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~----------~~~~~~~Di~~~~~~~~~~~~~D~l   72 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP----------HTQLLAKTIEGITLEEFDRLSFDMI   72 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT----------TSCEECSCGGGCCHHHHHHHCCSEE
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc----------ccccccCCHHHccHhHcCcCCcCEE
Confidence            57999999999999887664     68999999999999998863          3346778887654211   158999


Q ss_pred             EEccChHH
Q psy7830         208 FFGAGTTE  215 (364)
Q Consensus       208 i~~~~~~~  215 (364)
                      +.+.+|+.
T Consensus        73 ~~gpPCq~   80 (343)
T 1g55_A           73 LMSPPCQP   80 (343)
T ss_dssp             EECCC---
T ss_pred             EEcCCCcc
Confidence            99988753

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.28  E-value=0.0077  Score=56.91  Aligned_cols=91  Identities=15%  Similarity=0.095  Sum_probs=65.6

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC----CCCCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH----AEGGP  203 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~----~~~~~  203 (364)
                      +++|++||-+|+|. |..+..+++.   +|+++|.+++.++.+++         ++.+.  ++..+-.+..    ...+.
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~---------lGa~~--~i~~~~~~~~~~~~~~~g~  232 (340)
T 3s2e_A          164 TRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR---------LGAEV--AVNARDTDPAAWLQKEIGG  232 (340)
T ss_dssp             CCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---------TTCSE--EEETTTSCHHHHHHHHHSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH---------cCCCE--EEeCCCcCHHHHHHHhCCC
Confidence            68999999999986 8888888876   99999999999888765         22221  1211111100    01136


Q ss_pred             eeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         204 YDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       204 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +|+|+.+......+....+.|++||++++.
T Consensus       233 ~d~vid~~g~~~~~~~~~~~l~~~G~iv~~  262 (340)
T 3s2e_A          233 AHGVLVTAVSPKAFSQAIGMVRRGGTIALN  262 (340)
T ss_dssp             EEEEEESSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred             CCEEEEeCCCHHHHHHHHHHhccCCEEEEe
Confidence            999998877777888999999999998864

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.26  E-value=0.0052  Score=59.08  Aligned_cols=90  Identities=14%  Similarity=0.110  Sum_probs=62.0

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC-CCCCCeeE
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH-AEGGPYDV  206 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~-~~~~~fD~  206 (364)
                      +++|++||-+|+|. |.++..+++.   +|+++|.+++.++.+++ +        +.+.  ++..+-.+.. .-...+|+
T Consensus       192 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~-l--------Ga~~--vi~~~~~~~~~~~~~g~Dv  260 (369)
T 1uuf_A          192 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA-L--------GADE--VVNSRNADEMAAHLKSFDF  260 (369)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-H--------TCSE--EEETTCHHHHHTTTTCEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c--------CCcE--EeccccHHHHHHhhcCCCE
Confidence            78999999999975 6777777765   89999999998888875 2        1111  1111100000 00147999


Q ss_pred             EEEccChHHHHHHHHhccCCCcEEEE
Q psy7830         207 IFFGAGTTEVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       207 Ii~~~~~~~l~~~l~~~LkpGG~Lvi  232 (364)
                      |+-............+.|+++|+++.
T Consensus       261 vid~~g~~~~~~~~~~~l~~~G~iv~  286 (369)
T 1uuf_A          261 ILNTVAAPHNLDDFTTLLKRDGTMTL  286 (369)
T ss_dssp             EEECCSSCCCHHHHHTTEEEEEEEEE
T ss_pred             EEECCCCHHHHHHHHHHhccCCEEEE
Confidence            99776655556778899999999875

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=96.25  E-value=0.0061  Score=57.74  Aligned_cols=92  Identities=17%  Similarity=0.129  Sum_probs=65.6

Q ss_pred             cCCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC--CCC---CCC
Q psy7830         131 HLQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA--RWG---HAE  200 (364)
Q Consensus       131 ~l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~--~~~---~~~  200 (364)
                      .+++|++||-+|+|. |..+..+++.    +|+++|.+++.++.+++         ++.+.+  +..+.  .+.   ...
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~---------lGa~~~--i~~~~~~~~~v~~~t~  236 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE---------VGADAA--VKSGAGAADAIRELTG  236 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH---------TTCSEE--EECSTTHHHHHHHHHG
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH---------cCCCEE--EcCCCcHHHHHHHHhC
Confidence            378999999999976 7777777765    89999999999888865         222221  21111  000   001


Q ss_pred             CCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         201 GGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ...+|+|+-............+.|++||++++.
T Consensus       237 g~g~d~v~d~~G~~~~~~~~~~~l~~~G~iv~~  269 (345)
T 3jv7_A          237 GQGATAVFDFVGAQSTIDTAQQVVAVDGHISVV  269 (345)
T ss_dssp             GGCEEEEEESSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCeEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence            237999998877777888999999999998864

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.24  E-value=0.0059  Score=57.77  Aligned_cols=57  Identities=18%  Similarity=0.096  Sum_probs=49.5

Q ss_pred             hHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHh
Q psy7830         117 PPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKI  176 (364)
Q Consensus       117 ~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~  176 (364)
                      .+.++..+++..   ..+|+.|||..||+|..+.++.++  +.+|+|+++..++.+++++..
T Consensus       238 p~~l~~~~i~~~---~~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~  296 (323)
T 1boo_A          238 PAKLPEFFIRML---TEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLD  296 (323)
T ss_dssp             CTHHHHHHHHHH---CCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSC
T ss_pred             CHHHHHHHHHHh---CCCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence            356777777765   378999999999999999988887  999999999999999998865

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.20  E-value=0.013  Score=55.77  Aligned_cols=91  Identities=19%  Similarity=0.172  Sum_probs=64.4

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc---CCCCC---CCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK---DARWG---HAE  200 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~---D~~~~---~~~  200 (364)
                      +++|++||-+|+|. |.++..+++.    +|+++|.+++.++.+++.         +.+.  ++..   |..+.   ...
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l---------Ga~~--vi~~~~~~~~~~v~~~t~  232 (352)
T 3fpc_A          164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY---------GATD--IINYKNGDIVEQILKATD  232 (352)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH---------TCCE--EECGGGSCHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh---------CCce--EEcCCCcCHHHHHHHHcC
Confidence            78999999999876 7777777776    799999999988888663         2111  1111   11000   011


Q ss_pred             CCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         201 GGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ...+|+|+-............+.|++||++++.
T Consensus       233 g~g~D~v~d~~g~~~~~~~~~~~l~~~G~~v~~  265 (352)
T 3fpc_A          233 GKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNV  265 (352)
T ss_dssp             TCCEEEEEECSSCTTHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCCEEEECCCChHHHHHHHHHHhcCCEEEEe
Confidence            236999997776667788899999999998864

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.11  E-value=0.0087  Score=56.59  Aligned_cols=58  Identities=28%  Similarity=0.316  Sum_probs=49.0

Q ss_pred             ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCH---HHHHHHHHHHHh
Q psy7830         116 EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLP---ETLNNSLKNIKI  176 (364)
Q Consensus       116 s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~---~~l~~a~~~~~~  176 (364)
                      ..+.++..+++...   .+|+.|||.-||+|..+.++.++  +.+|+|+++   ..++.+++++.+
T Consensus       227 kp~~l~~~~i~~~~---~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~  289 (319)
T 1eg2_A          227 KPAAVIERLVRALS---HPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQD  289 (319)
T ss_dssp             CCHHHHHHHHHHHS---CTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHhC---CCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHH
Confidence            45667788887654   78999999999999999888877  999999999   999999999866

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=96.08  E-value=0.0092  Score=56.15  Aligned_cols=69  Identities=13%  Similarity=-0.012  Sum_probs=54.7

Q ss_pred             CEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC-CCCeeEEEEcc
Q psy7830         136 SRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE-GGPYDVIFFGA  211 (364)
Q Consensus       136 ~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD~Ii~~~  211 (364)
                      ++|||+-||.|.++..+.+.   .|.++|+++.+++.-+.|..           -.++.+|+.+.... -...|+++...
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~-----------~~~~~~DI~~i~~~~~~~~D~l~ggp   69 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS-----------AKLIKGDISKISSDEFPKCDGIIGGP   69 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC-----------SEEEESCGGGCCGGGSCCCSEEECCC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC-----------CCcccCChhhCCHhhCCcccEEEecC
Confidence            57999999999999888776   77899999999888877752           24678898776432 25689999988


Q ss_pred             ChHH
Q psy7830         212 GTTE  215 (364)
Q Consensus       212 ~~~~  215 (364)
                      +|+.
T Consensus        70 PCQ~   73 (331)
T 3ubt_Y           70 PSQS   73 (331)
T ss_dssp             CGGG
T ss_pred             CCCC
Confidence            8864

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.04  E-value=0.012  Score=56.49  Aligned_cols=92  Identities=18%  Similarity=0.104  Sum_probs=63.2

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC----CCCCC--CC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD----ARWGH--AE  200 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D----~~~~~--~~  200 (364)
                      +++|++||-+|+|. |.+++.+++.    +|+++|.+++.++.+++         ++.+.+ +...+    ..+..  ..
T Consensus       189 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~---------lGa~~v-i~~~~~~~~~~~~i~~~t  258 (373)
T 1p0f_A          189 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE---------LGATEC-LNPKDYDKPIYEVICEKT  258 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH---------TTCSEE-ECGGGCSSCHHHHHHHHT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH---------cCCcEE-EecccccchHHHHHHHHh
Confidence            68999999999875 6677777765    69999999998888764         222211 11111    10000  01


Q ss_pred             CCCeeEEEEccChHHHHHHHHhccCCC-cEEEEE
Q psy7830         201 GGPYDVIFFGAGTTEVSKTILSQLKPN-GRIVAP  233 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi~  233 (364)
                      .+.+|+|+-.......+....+.|+++ |++++.
T Consensus       259 ~gg~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~  292 (373)
T 1p0f_A          259 NGGVDYAVECAGRIETMMNALQSTYCGSGVTVVL  292 (373)
T ss_dssp             TSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            237999998777667788889999999 998753

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.04  E-value=0.0075  Score=58.37  Aligned_cols=89  Identities=20%  Similarity=0.144  Sum_probs=62.2

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC-C---C---C
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW-G---H---A  199 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~-~---~---~  199 (364)
                      +++|++||-+|||. |.+++.+++.    +|+++|.+++.++.+++         ++.   .++...-.+ .   .   .
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~---------lGa---~~i~~~~~~~~~~~v~~~t  250 (398)
T 1kol_A          183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA---------QGF---EIADLSLDTPLHEQIAALL  250 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH---------TTC---EEEETTSSSCHHHHHHHHH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH---------cCC---cEEccCCcchHHHHHHHHh
Confidence            78999999999876 7777777775    69999999999888864         232   222211111 0   0   0


Q ss_pred             CCCCeeEEEEccChH---------------HHHHHHHhccCCCcEEEE
Q psy7830         200 EGGPYDVIFFGAGTT---------------EVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       200 ~~~~fD~Ii~~~~~~---------------~l~~~l~~~LkpGG~Lvi  232 (364)
                      ....+|+|+-.....               ..+....+.|++||++++
T Consensus       251 ~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~  298 (398)
T 1kol_A          251 GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGI  298 (398)
T ss_dssp             SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEE
T ss_pred             CCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEE
Confidence            123699998766543               367788899999999875

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.96  E-value=0.031  Score=52.79  Aligned_cols=89  Identities=17%  Similarity=0.126  Sum_probs=62.9

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC-----C-C
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA-----E-G  201 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~-----~-~  201 (364)
                      +++|++||-+|+|. |..+..+++.   +|+++|.+++.++.+++ +        +.+.  ++  |..+...     . .
T Consensus       162 ~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-l--------Ga~~--~~--d~~~~~~~~~~~~~~  228 (339)
T 1rjw_A          162 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE-L--------GADL--VV--NPLKEDAAKFMKEKV  228 (339)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-T--------TCSE--EE--CTTTSCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-C--------CCCE--Ee--cCCCccHHHHHHHHh
Confidence            78999999999964 6666666665   99999999998888764 2        2221  11  2211100     0 0


Q ss_pred             CCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +.+|+|+.+...........+.|++||+++..
T Consensus       229 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~  260 (339)
T 1rjw_A          229 GGVHAAVVTAVSKPAFQSAYNSIRRGGACVLV  260 (339)
T ss_dssp             SSEEEEEESSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEe
Confidence            46999998877767788889999999998753

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=95.90  E-value=0.0099  Score=56.99  Aligned_cols=92  Identities=17%  Similarity=0.143  Sum_probs=63.0

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC-CCCC-----CC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA-RWGH-----AE  200 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~-~~~~-----~~  200 (364)
                      +++|++||-+|+|. |.++..+++.    +|+++|.+++.++.+++         ++.+.+ +...+. .+..     ..
T Consensus       190 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~---------lGa~~v-i~~~~~~~~~~~~~~~~~  259 (374)
T 1cdo_A          190 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV---------FGATDF-VNPNDHSEPISQVLSKMT  259 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH---------TTCCEE-ECGGGCSSCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH---------hCCceE-EeccccchhHHHHHHHHh
Confidence            67899999999875 6677777765    69999999998888764         222211 111110 0000     01


Q ss_pred             CCCeeEEEEccChHHHHHHHHhccCCC-cEEEEE
Q psy7830         201 GGPYDVIFFGAGTTEVSKTILSQLKPN-GRIVAP  233 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi~  233 (364)
                      .+.+|+|+-............+.|++| |++++.
T Consensus       260 ~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~  293 (374)
T 1cdo_A          260 NGGVDFSLECVGNVGVMRNALESCLKGWGVSVLV  293 (374)
T ss_dssp             TSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHhhcCCcEEEEE
Confidence            136999998777667788899999999 998863

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.71  E-value=0.013  Score=56.25  Aligned_cols=92  Identities=16%  Similarity=0.086  Sum_probs=62.7

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC----CCCCC--CC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD----ARWGH--AE  200 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D----~~~~~--~~  200 (364)
                      +++|++||-+|+|. |.+++.+++.    +|+++|.+++.++.+++         ++.+.+ +...+    ..+..  ..
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~---------lGa~~v-i~~~~~~~~~~~~v~~~~  262 (376)
T 1e3i_A          193 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA---------LGATDC-LNPRELDKPVQDVITELT  262 (376)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH---------TTCSEE-ECGGGCSSCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH---------hCCcEE-EccccccchHHHHHHHHh
Confidence            67899999999875 6667777765    69999999998888764         222211 11111    00000  01


Q ss_pred             CCCeeEEEEccChHHHHHHHHhccCCC-cEEEEE
Q psy7830         201 GGPYDVIFFGAGTTEVSKTILSQLKPN-GRIVAP  233 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi~  233 (364)
                      .+.+|+|+-.......+....+.|++| |++++.
T Consensus       263 ~~g~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~  296 (376)
T 1e3i_A          263 AGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVV  296 (376)
T ss_dssp             TSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCccEEEECCCCHHHHHHHHHHhhcCCCEEEEE
Confidence            137999998777667788899999999 998853

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.65  E-value=0.0093  Score=57.33  Aligned_cols=91  Identities=18%  Similarity=0.157  Sum_probs=63.9

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC--CCCC---C--C
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD--ARWG---H--A  199 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D--~~~~---~--~  199 (364)
                      +++|++||-+|+|. |.+++.+++.    +|+++|.+++.++.+++         ++.+.  ++...  ..+.   .  .
T Consensus       191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~---------lGa~~--vi~~~~~~~~~~~~i~~~  259 (378)
T 3uko_A          191 VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK---------FGVNE--FVNPKDHDKPIQEVIVDL  259 (378)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT---------TTCCE--EECGGGCSSCHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH---------cCCcE--EEccccCchhHHHHHHHh
Confidence            67899999999875 7777777766    79999999998887764         22222  12111  0000   0  0


Q ss_pred             CCCCeeEEEEccChHHHHHHHHhccCCC-cEEEEE
Q psy7830         200 EGGPYDVIFFGAGTTEVSKTILSQLKPN-GRIVAP  233 (364)
Q Consensus       200 ~~~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi~  233 (364)
                      ..+.+|+|+-.......+....+.|++| |++++.
T Consensus       260 ~~gg~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~  294 (378)
T 3uko_A          260 TDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIV  294 (378)
T ss_dssp             TTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             cCCCCCEEEECCCCHHHHHHHHHHhhccCCEEEEE
Confidence            1237999998877777888999999997 998763

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=95.63  E-value=0.014  Score=55.98  Aligned_cols=92  Identities=16%  Similarity=0.090  Sum_probs=62.7

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC----CCCCC--CC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD----ARWGH--AE  200 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D----~~~~~--~~  200 (364)
                      +++|++||-+|+|. |.++..+++.    +|+++|.+++.++.+++         ++.+.+ +...+    ..+..  ..
T Consensus       189 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~---------lGa~~v-i~~~~~~~~~~~~~~~~~  258 (374)
T 2jhf_A          189 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE---------VGATEC-VNPQDYKKPIQEVLTEMS  258 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH---------TTCSEE-ECGGGCSSCHHHHHHHHT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH---------hCCceE-ecccccchhHHHHHHHHh
Confidence            67899999999875 6667777765    69999999998888764         222211 11111    00000  01


Q ss_pred             CCCeeEEEEccChHHHHHHHHhccCCC-cEEEEE
Q psy7830         201 GGPYDVIFFGAGTTEVSKTILSQLKPN-GRIVAP  233 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi~  233 (364)
                      .+.+|+|+-............+.|++| |++++.
T Consensus       259 ~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~  292 (374)
T 2jhf_A          259 NGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIV  292 (374)
T ss_dssp             TSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEEC
T ss_pred             CCCCcEEEECCCCHHHHHHHHHHhhcCCcEEEEe
Confidence            237999998777667788889999999 998753

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.63  E-value=0.013  Score=56.19  Aligned_cols=92  Identities=16%  Similarity=0.105  Sum_probs=63.0

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC-CCC---C--CC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA-RWG---H--AE  200 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~-~~~---~--~~  200 (364)
                      +++|++||-+|+|. |.++..+++.    +|+++|.+++.++.+++.         +.+.+ +...+. .+.   .  ..
T Consensus       188 ~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l---------Ga~~v-i~~~~~~~~~~~~v~~~~  257 (373)
T 2fzw_A          188 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF---------GATEC-INPQDFSKPIQEVLIEMT  257 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH---------TCSEE-ECGGGCSSCHHHHHHHHT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc---------CCceE-eccccccccHHHHHHHHh
Confidence            67899999999875 6667777765    699999999988888642         11111 111110 000   0  01


Q ss_pred             CCCeeEEEEccChHHHHHHHHhccCCC-cEEEEE
Q psy7830         201 GGPYDVIFFGAGTTEVSKTILSQLKPN-GRIVAP  233 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi~  233 (364)
                      .+.+|+|+-............+.|+++ |++++.
T Consensus       258 ~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~  291 (373)
T 2fzw_A          258 DGGVDYSFECIGNVKVMRAALEACHKGWGVSVVV  291 (373)
T ss_dssp             TSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCCCEEEECCCcHHHHHHHHHhhccCCcEEEEE
Confidence            237999998777667788899999999 998863

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=95.61  E-value=0.045  Score=52.02  Aligned_cols=93  Identities=14%  Similarity=0.051  Sum_probs=62.5

Q ss_pred             CCCC------CEEEEECCCc-cHHH-HHHH-cc---e-EEEEeCCHH---HHHHHHHHHHhcCCCCCCCCCEEEEEcCCC
Q psy7830         132 LQNG------SRVLDIGSGQ-GYMA-TAKE-WL---S-SVRQLLLPE---TLNNSLKNIKISRPDLLQSKTLEFILKDAR  195 (364)
Q Consensus       132 l~~g------~~VLDiGcGs-G~~a-~~la-~~---~-V~~vDis~~---~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~  195 (364)
                      +++|      ++||-+|+|. |.++ ..++ +.   + |+++|.+++   .++.+++         ++.+.+.....|..
T Consensus       164 ~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~---------lGa~~v~~~~~~~~  234 (357)
T 2b5w_A          164 ASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE---------LDATYVDSRQTPVE  234 (357)
T ss_dssp             HTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH---------TTCEEEETTTSCGG
T ss_pred             CCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH---------cCCcccCCCccCHH
Confidence            6789      9999999865 7777 7888 66   5 999999988   7777754         22222200000111


Q ss_pred             CCCCCCCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         196 WGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       196 ~~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +.....+.+|+|+-.......+....+.|++||+++..
T Consensus       235 ~i~~~~gg~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~  272 (357)
T 2b5w_A          235 DVPDVYEQMDFIYEATGFPKHAIQSVQALAPNGVGALL  272 (357)
T ss_dssp             GHHHHSCCEEEEEECSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHhCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEE
Confidence            10000137999998777666778889999999998864

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=95.54  E-value=0.019  Score=53.67  Aligned_cols=73  Identities=15%  Similarity=0.170  Sum_probs=55.9

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc---e--EEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC----CCC
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL---S--SVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE----GGP  203 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~---~--V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~----~~~  203 (364)
                      +...+|+|+.||.|.++..+.+.   .  |.++|+++.+++..+.|.          ++..++.+|+.+....    .+.
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~----------~~~~~~~~DI~~i~~~~i~~~~~   83 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH----------QGKIMYVGDVRSVTQKHIQEWGP   83 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT----------TTCEEEECCGGGCCHHHHHHTCC
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC----------CCCceeCCChHHccHHHhcccCC
Confidence            45679999999999999888776   2  689999999988877765          2345678898765422    136


Q ss_pred             eeEEEEccChHH
Q psy7830         204 YDVIFFGAGTTE  215 (364)
Q Consensus       204 fD~Ii~~~~~~~  215 (364)
                      +|+|+...+|+.
T Consensus        84 ~Dll~ggpPCQ~   95 (295)
T 2qrv_A           84 FDLVIGGSPCND   95 (295)
T ss_dssp             CSEEEECCCCGG
T ss_pred             cCEEEecCCCcc
Confidence            999998877753

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=95.50  E-value=0.06  Score=50.65  Aligned_cols=93  Identities=16%  Similarity=0.090  Sum_probs=63.1

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC--C---CCCCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR--W---GHAEG  201 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~--~---~~~~~  201 (364)
                      +++|++||-.|+|. |.++..+++.    .++++|.+++.++.+++         ++.. ..+...+..  +   .....
T Consensus       158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~---------lGa~-~~i~~~~~~~~~~~~~~~~~  227 (346)
T 4a2c_A          158 GCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS---------FGAM-QTFNSSEMSAPQMQSVLREL  227 (346)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH---------TTCS-EEEETTTSCHHHHHHHHGGG
T ss_pred             cCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH---------cCCe-EEEeCCCCCHHHHHHhhccc
Confidence            68999999999976 4455666655    67899999998888765         2222 111111110  0   01122


Q ss_pred             CCeeEEEEccChHHHHHHHHhccCCCcEEEEEE
Q psy7830         202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ..+|+|+-.......++...+.|++||++++.-
T Consensus       228 ~g~d~v~d~~G~~~~~~~~~~~l~~~G~~v~~g  260 (346)
T 4a2c_A          228 RFNQLILETAGVPQTVELAVEIAGPHAQLALVG  260 (346)
T ss_dssp             CSSEEEEECSCSHHHHHHHHHHCCTTCEEEECC
T ss_pred             CCcccccccccccchhhhhhheecCCeEEEEEe
Confidence            468999887777778888999999999988643

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=95.47  E-value=0.018  Score=55.08  Aligned_cols=90  Identities=18%  Similarity=0.178  Sum_probs=62.2

Q ss_pred             CCCEEEEEC-CCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc-CCCCC--CCCCCCe
Q psy7830         134 NGSRVLDIG-SGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK-DARWG--HAEGGPY  204 (364)
Q Consensus       134 ~g~~VLDiG-cGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~-D~~~~--~~~~~~f  204 (364)
                      +|++||-+| +|. |.++..+++.    +|+++|.+++.++.+++         ++.+.+ +... |..+.  ....+.+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~---------lGad~v-i~~~~~~~~~v~~~~~~g~  240 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS---------LGAHHV-IDHSKPLAAEVAALGLGAP  240 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH---------TTCSEE-ECTTSCHHHHHHTTCSCCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH---------cCCCEE-EeCCCCHHHHHHHhcCCCc
Confidence            788999998 554 7777777764    99999999998888765         222211 1101 11000  0123579


Q ss_pred             eEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         205 DVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       205 D~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      |+|+-............+.|++||++++.
T Consensus       241 Dvvid~~g~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          241 AFVFSTTHTDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EEEEECSCHHHHHHHHHHHSCTTCEEEEC
T ss_pred             eEEEECCCchhhHHHHHHHhcCCCEEEEE
Confidence            99998777777788899999999999864

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=95.44  E-value=0.021  Score=53.60  Aligned_cols=98  Identities=21%  Similarity=0.221  Sum_probs=59.0

Q ss_pred             CCCEEEEECCCccHHHHHHHcc----------eEEEEeCCH--------HHHHHHHHHHHhcCCCCCCCC--CEEEEEcC
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL----------SSVRQLLLP--------ETLNNSLKNIKISRPDLLQSK--TLEFILKD  193 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~----------~V~~vDis~--------~~l~~a~~~~~~~~~~~l~~~--~v~~~~~D  193 (364)
                      +.-+|||+|-|+|.........          +++++|.++        +......+.+...... ....  .+.+..+|
T Consensus        96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~-~~~~~v~L~l~~GD  174 (308)
T 3vyw_A           96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPE-YEGERLSLKVLLGD  174 (308)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSE-EECSSEEEEEEESC
T ss_pred             CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCcc-ccCCcEEEEEEech
Confidence            3457999999999976433211          677788632        1111111111110000 1112  35678899


Q ss_pred             CCCCCCC--CCCeeEEEEccCh---------HHHHHHHHhccCCCcEEEE
Q psy7830         194 ARWGHAE--GGPYDVIFFGAGT---------TEVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       194 ~~~~~~~--~~~fD~Ii~~~~~---------~~l~~~l~~~LkpGG~Lvi  232 (364)
                      +......  ...||+|+.++-.         ..++..+.++++|||+++-
T Consensus       175 a~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT  224 (308)
T 3vyw_A          175 ARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS  224 (308)
T ss_dssp             HHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred             HHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE
Confidence            8754332  3479999987643         2488999999999999884

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.44  E-value=0.01  Score=56.58  Aligned_cols=92  Identities=17%  Similarity=0.120  Sum_probs=61.3

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC-CCCCeeE
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA-EGGPYDV  206 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~-~~~~fD~  206 (364)
                      +++|++||-+|+|. |.++..+++.   +|+++|.+++.++.+++ +        +.+.+ +...+..+... -.+.+|+
T Consensus       177 ~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~-l--------Ga~~v-~~~~~~~~~~~~~~~~~D~  246 (360)
T 1piw_A          177 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK-M--------GADHY-IATLEEGDWGEKYFDTFDL  246 (360)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH-H--------TCSEE-EEGGGTSCHHHHSCSCEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-c--------CCCEE-EcCcCchHHHHHhhcCCCE
Confidence            78999999999864 6667777765   99999999988888765 2        11111 11111101000 0147999


Q ss_pred             EEEccCh--HHHHHHHHhccCCCcEEEEE
Q psy7830         207 IFFGAGT--TEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       207 Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      |+-....  ........+.|++||+++..
T Consensus       247 vid~~g~~~~~~~~~~~~~l~~~G~iv~~  275 (360)
T 1piw_A          247 IVVCASSLTDIDFNIMPKAMKVGGRIVSI  275 (360)
T ss_dssp             EEECCSCSTTCCTTTGGGGEEEEEEEEEC
T ss_pred             EEECCCCCcHHHHHHHHHHhcCCCEEEEe
Confidence            9977655  45566778899999998753

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=95.43  E-value=0.018  Score=53.72  Aligned_cols=85  Identities=18%  Similarity=0.160  Sum_probs=56.9

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      +++|++||-+|+|. |.++..+++.   +|++++ +++..+.+++.         +.+  .++ .|....   ...+|+|
T Consensus       140 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~l---------Ga~--~v~-~d~~~v---~~g~Dvv  203 (315)
T 3goh_A          140 LTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKR---------GVR--HLY-REPSQV---TQKYFAI  203 (315)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHH---------TEE--EEE-SSGGGC---CSCEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHc---------CCC--EEE-cCHHHh---CCCccEE
Confidence            67999999999964 7777777776   999999 88888887652         111  112 242111   4579999


Q ss_pred             EEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         208 FFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       208 i~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +-...-... ....+.|++||+++..
T Consensus       204 ~d~~g~~~~-~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          204 FDAVNSQNA-AALVPSLKANGHIICI  228 (315)
T ss_dssp             ECC--------TTGGGEEEEEEEEEE
T ss_pred             EECCCchhH-HHHHHHhcCCCEEEEE
Confidence            855444333 6778999999998875

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.42  E-value=0.046  Score=47.06  Aligned_cols=91  Identities=18%  Similarity=0.091  Sum_probs=57.5

Q ss_pred             CCCCCEEEEECCC--ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC--CC---CCCC
Q psy7830         132 LQNGSRVLDIGSG--QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR--WG---HAEG  201 (364)
Q Consensus       132 l~~g~~VLDiGcG--sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~--~~---~~~~  201 (364)
                      +++|++||..|++  .|..+..+++.   +|+++|.+++..+.+++         ++. ...+...+..  +.   ....
T Consensus        36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~---------~g~-~~~~d~~~~~~~~~~~~~~~~  105 (198)
T 1pqw_A           36 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR---------LGV-EYVGDSRSVDFADEILELTDG  105 (198)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT---------TCC-SEEEETTCSTHHHHHHHHTTT
T ss_pred             CCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---------cCC-CEEeeCCcHHHHHHHHHHhCC
Confidence            6789999999953  35555555544   89999999887766543         121 1111111110  00   0112


Q ss_pred             CCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ..+|+|+.+.. ........+.|++||++++.
T Consensus       106 ~~~D~vi~~~g-~~~~~~~~~~l~~~G~~v~~  136 (198)
T 1pqw_A          106 YGVDVVLNSLA-GEAIQRGVQILAPGGRFIEL  136 (198)
T ss_dssp             CCEEEEEECCC-THHHHHHHHTEEEEEEEEEC
T ss_pred             CCCeEEEECCc-hHHHHHHHHHhccCCEEEEE
Confidence            36999997765 45677888999999998863

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=95.38  E-value=0.024  Score=54.09  Aligned_cols=91  Identities=20%  Similarity=0.116  Sum_probs=62.3

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC------CCCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG------HAEG  201 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~------~~~~  201 (364)
                      +++|++||-+|+|. |..+..+++.   +|+++|.+++.++.+++.         +.+.  ++..+..+.      ....
T Consensus       187 ~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l---------Ga~~--vi~~~~~~~~~~v~~~~~g  255 (363)
T 3uog_A          187 LRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFAL---------GADH--GINRLEEDWVERVYALTGD  255 (363)
T ss_dssp             CCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---------TCSE--EEETTTSCHHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHc---------CCCE--EEcCCcccHHHHHHHHhCC
Confidence            67999999999876 6677777766   999999999988887652         2111  121221110      0112


Q ss_pred             CCeeEEEEccChHHHHHHHHhccCCCcEEEEEE
Q psy7830         202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ..+|+|+-... ...+....+.|++||++++.-
T Consensus       256 ~g~D~vid~~g-~~~~~~~~~~l~~~G~iv~~G  287 (363)
T 3uog_A          256 RGADHILEIAG-GAGLGQSLKAVAPDGRISVIG  287 (363)
T ss_dssp             CCEEEEEEETT-SSCHHHHHHHEEEEEEEEEEC
T ss_pred             CCceEEEECCC-hHHHHHHHHHhhcCCEEEEEe
Confidence            37999987665 445677888999999988753

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=95.35  E-value=0.014  Score=56.19  Aligned_cols=91  Identities=15%  Similarity=0.114  Sum_probs=62.0

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC------CCC-C--
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD------ARW-G--  197 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D------~~~-~--  197 (364)
                      +++|++||-+|+|. |..++.+++.    +|+++|.+++.++.+++         ++.+.  ++..+      ..+ .  
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~---------lGa~~--vi~~~~~~~~~~~~~v~~  261 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE---------IGADL--TLNRRETSVEERRKAIMD  261 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH---------TTCSE--EEETTTSCHHHHHHHHHH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH---------cCCcE--EEeccccCcchHHHHHHH
Confidence            67899999999764 6666666665    89999999998888764         22221  12211      000 0  


Q ss_pred             CCCCCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         198 HAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       198 ~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ......+|+|+-.......+....+.|++||+++..
T Consensus       262 ~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~  297 (380)
T 1vj0_A          262 ITHGRGADFILEATGDSRALLEGSELLRRGGFYSVA  297 (380)
T ss_dssp             HTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEEC
T ss_pred             HhCCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence            011236999998776666778888999999998763

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=95.32  E-value=0.0037  Score=74.02  Aligned_cols=105  Identities=12%  Similarity=0.139  Sum_probs=57.0

Q ss_pred             HHHHHHhcc-CCCCCEEEEECCCccHHHHHHHc--------c-eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830         123 RCLEQLVDH-LQNGSRVLDIGSGQGYMATAKEW--------L-SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK  192 (364)
Q Consensus       123 ~~l~~L~~~-l~~g~~VLDiGcGsG~~a~~la~--------~-~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~  192 (364)
                      .+++.+... ..+..+|||||.|+|..+..+..        . +++..|+++...+.++++++.     +   ++.....
T Consensus      1228 ~~~~~~~~~~~~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~-----~---di~~~~~ 1299 (2512)
T 2vz8_A         1228 ACVDTALENMASPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQ-----L---HVTQGQW 1299 (2512)
T ss_dssp             HHHHHHHTTSSSSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHH-----H---TEEEECC
T ss_pred             HHHHHHHhcCCCCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhh-----c---ccccccc
Confidence            344544421 24678999999999976544321        1 688899999998888887754     1   3333222


Q ss_pred             CCCCC-CCCCCCeeEEEEccChH------HHHHHHHhccCCCcEEEEEEc
Q psy7830         193 DARWG-HAEGGPYDVIFFGAGTT------EVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       193 D~~~~-~~~~~~fD~Ii~~~~~~------~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      |.... ......||+|++...++      ..+.+++++|||||+|++...
T Consensus      1300 d~~~~~~~~~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1300 DPANPAPGSLGKADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             CSSCCCC-----CCEEEEECC--------------------CCEEEEEEC
T ss_pred             cccccccCCCCceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence            33221 11235699999887765      256788999999999988653

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=95.25  E-value=0.032  Score=52.69  Aligned_cols=91  Identities=15%  Similarity=0.117  Sum_probs=60.7

Q ss_pred             CCCCCEEEEECCCc--cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC--CCC---CCCC
Q psy7830         132 LQNGSRVLDIGSGQ--GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA--RWG---HAEG  201 (364)
Q Consensus       132 l~~g~~VLDiGcGs--G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~--~~~---~~~~  201 (364)
                      +++|++||-+|+|+  |..+..+++.   +|+++|.+++.++.+++.         +. ...+...+.  .+.   ....
T Consensus       142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l---------ga-~~~~~~~~~~~~~~~~~~~~~  211 (340)
T 3gms_A          142 LQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRL---------GA-AYVIDTSTAPLYETVMELTNG  211 (340)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH---------TC-SEEEETTTSCHHHHHHHHTTT
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhC---------CC-cEEEeCCcccHHHHHHHHhCC
Confidence            68999999999974  6666666665   999999999988888752         11 111111111  000   0112


Q ss_pred             CCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ..+|+|+-+........ ..+.|++||++++.
T Consensus       212 ~g~Dvvid~~g~~~~~~-~~~~l~~~G~iv~~  242 (340)
T 3gms_A          212 IGADAAIDSIGGPDGNE-LAFSLRPNGHFLTI  242 (340)
T ss_dssp             SCEEEEEESSCHHHHHH-HHHTEEEEEEEEEC
T ss_pred             CCCcEEEECCCChhHHH-HHHHhcCCCEEEEE
Confidence            47999998777665544 44899999998864

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=95.24  E-value=0.0088  Score=57.06  Aligned_cols=92  Identities=18%  Similarity=0.143  Sum_probs=59.1

Q ss_pred             CC-CCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeE
Q psy7830         132 LQ-NGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDV  206 (364)
Q Consensus       132 l~-~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~  206 (364)
                      ++ +|++||-+|+|. |.++..+++.   +|+++|.+++.++.+++.        ++.+.+ +...+........+.+|+
T Consensus       177 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~--------lGa~~v-i~~~~~~~~~~~~~g~D~  247 (357)
T 2cf5_A          177 LKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQD--------LGADDY-VIGSDQAKMSELADSLDY  247 (357)
T ss_dssp             TTSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTT--------SCCSCE-EETTCHHHHHHSTTTEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHH--------cCCcee-eccccHHHHHHhcCCCCE
Confidence            56 899999999764 5566666665   999999998877776533        222222 111110000001136999


Q ss_pred             EEEccChHHHHHHHHhccCCCcEEEE
Q psy7830         207 IFFGAGTTEVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       207 Ii~~~~~~~l~~~l~~~LkpGG~Lvi  232 (364)
                      |+-.......+....+.|++||+++.
T Consensus       248 vid~~g~~~~~~~~~~~l~~~G~iv~  273 (357)
T 2cf5_A          248 VIDTVPVHHALEPYLSLLKLDGKLIL  273 (357)
T ss_dssp             EEECCCSCCCSHHHHTTEEEEEEEEE
T ss_pred             EEECCCChHHHHHHHHHhccCCEEEE
Confidence            99766554456677889999999876

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=95.14  E-value=0.033  Score=52.47  Aligned_cols=92  Identities=15%  Similarity=0.101  Sum_probs=60.9

Q ss_pred             CCCCCEEEEECC--CccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC---C--CCC
Q psy7830         132 LQNGSRVLDIGS--GQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG---H--AEG  201 (364)
Q Consensus       132 l~~g~~VLDiGc--GsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~---~--~~~  201 (364)
                      +++|++||-.|+  |.|..+..+++.   +|++++.+++.++.+++.+        +.. ..+...+..+.   .  ...
T Consensus       153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~--------g~~-~~~d~~~~~~~~~~~~~~~~  223 (345)
T 2j3h_A          153 PKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKF--------GFD-DAFNYKEESDLTAALKRCFP  223 (345)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTS--------CCS-EEEETTSCSCSHHHHHHHCT
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc--------CCc-eEEecCCHHHHHHHHHHHhC
Confidence            678999999997  346666666654   9999999998887776432        211 11111111011   0  012


Q ss_pred             CCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +.+|+|+.+... .......+.|++||++++.
T Consensus       224 ~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~  254 (345)
T 2j3h_A          224 NGIDIYFENVGG-KMLDAVLVNMNMHGRIAVC  254 (345)
T ss_dssp             TCEEEEEESSCH-HHHHHHHTTEEEEEEEEEC
T ss_pred             CCCcEEEECCCH-HHHHHHHHHHhcCCEEEEE
Confidence            469999988776 5678888999999998863

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=95.08  E-value=0.067  Score=50.20  Aligned_cols=92  Identities=23%  Similarity=0.176  Sum_probs=60.6

Q ss_pred             CCCCCEEEEECCC--ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC--CCC--CCCC
Q psy7830         132 LQNGSRVLDIGSG--QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR--WGH--AEGG  202 (364)
Q Consensus       132 l~~g~~VLDiGcG--sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~--~~~--~~~~  202 (364)
                      +++|++||-.|++  .|..+..+++.   +|++++.+++.++.+.+.+        +.. ..+...+..  +..  ...+
T Consensus       147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~--------g~~-~~~~~~~~~~~~~~~~~~~~  217 (336)
T 4b7c_A          147 PKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEEL--------GFD-GAIDYKNEDLAAGLKRECPK  217 (336)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT--------CCS-EEEETTTSCHHHHHHHHCTT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc--------CCC-EEEECCCHHHHHHHHHhcCC
Confidence            7899999999983  46666666655   9999999998887773332        221 111111110  000  0124


Q ss_pred             CeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      .+|+|+.+... .......+.|++||++++.
T Consensus       218 ~~d~vi~~~g~-~~~~~~~~~l~~~G~iv~~  247 (336)
T 4b7c_A          218 GIDVFFDNVGG-EILDTVLTRIAFKARIVLC  247 (336)
T ss_dssp             CEEEEEESSCH-HHHHHHHTTEEEEEEEEEC
T ss_pred             CceEEEECCCc-chHHHHHHHHhhCCEEEEE
Confidence            69999987764 5678888999999998863

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=95.07  E-value=0.015  Score=55.76  Aligned_cols=93  Identities=19%  Similarity=0.253  Sum_probs=58.6

Q ss_pred             CC-CCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeE
Q psy7830         132 LQ-NGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDV  206 (364)
Q Consensus       132 l~-~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~  206 (364)
                      +. +|++||-+|+|. |..+..+++.   +|++++.+++.++.+++.+        +.+.+ +...+........+.+|+
T Consensus       184 ~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~l--------Ga~~v-~~~~~~~~~~~~~~~~D~  254 (366)
T 1yqd_A          184 LDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNF--------GADSF-LVSRDQEQMQAAAGTLDG  254 (366)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTS--------CCSEE-EETTCHHHHHHTTTCEEE
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc--------CCceE-EeccCHHHHHHhhCCCCE
Confidence            56 899999999764 5555666655   9999999998877765432        22211 111110000001136999


Q ss_pred             EEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         207 IFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       207 Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      |+.+...........+.|+++|+++..
T Consensus       255 vid~~g~~~~~~~~~~~l~~~G~iv~~  281 (366)
T 1yqd_A          255 IIDTVSAVHPLLPLFGLLKSHGKLILV  281 (366)
T ss_dssp             EEECCSSCCCSHHHHHHEEEEEEEEEC
T ss_pred             EEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence            997765544456677899999998763

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=95.04  E-value=0.12  Score=47.16  Aligned_cols=101  Identities=10%  Similarity=-0.020  Sum_probs=64.9

Q ss_pred             CCCCEEEEECCCccHHHHHHHc---------c--eEEEEe-----CCHH-------------------HHHHHHHHHH--
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEW---------L--SSVRQL-----LLPE-------------------TLNNSLKNIK--  175 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~---------~--~V~~vD-----is~~-------------------~l~~a~~~~~--  175 (364)
                      .-...|+|+||-.|..+..++.         .  +|+++|     ..+.                   ..+..++.+.  
T Consensus        68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~  147 (257)
T 3tos_A           68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH  147 (257)
T ss_dssp             TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence            3345899999999998877553         1  899999     2210                   0111111111  


Q ss_pred             hcCCCCCC--CCCEEEEEcCCCCCCC------CCCCeeEEEEccChH----HHHHHHHhccCCCcEEEEEE
Q psy7830         176 ISRPDLLQ--SKTLEFILKDARWGHA------EGGPYDVIFFGAGTT----EVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       176 ~~~~~~l~--~~~v~~~~~D~~~~~~------~~~~fD~Ii~~~~~~----~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      .+. ..++  .++++++.+++.+..+      +..+||+|+.+....    ..++.+...|+|||++++--
T Consensus       148 ~~~-~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~DD  217 (257)
T 3tos_A          148 ECS-DFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDE  217 (257)
T ss_dssp             HTT-STTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred             hhh-hhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEEcC
Confidence            000 0022  2689999999875432      234799999988762    25678899999999999644

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=95.04  E-value=0.079  Score=49.62  Aligned_cols=91  Identities=24%  Similarity=0.200  Sum_probs=58.6

Q ss_pred             CCCCCEEEEECC--CccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC---C--CCC
Q psy7830         132 LQNGSRVLDIGS--GQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG---H--AEG  201 (364)
Q Consensus       132 l~~g~~VLDiGc--GsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~---~--~~~  201 (364)
                      +++|++||-.||  |.|..+..+++.   +|+++|.+++.++.+++ +        +. ...+...|..+.   .  ...
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~-~--------g~-~~~~d~~~~~~~~~~~~~~~~  212 (333)
T 1v3u_A          143 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ-I--------GF-DAAFNYKTVNSLEEALKKASP  212 (333)
T ss_dssp             CCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-T--------TC-SEEEETTSCSCHHHHHHHHCT
T ss_pred             CCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-c--------CC-cEEEecCCHHHHHHHHHHHhC
Confidence            678999999998  345555555544   99999999988877732 2        11 111111110110   0  011


Q ss_pred             CCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +.+|+++.+.... ......+.|++||++++.
T Consensus       213 ~~~d~vi~~~g~~-~~~~~~~~l~~~G~~v~~  243 (333)
T 1v3u_A          213 DGYDCYFDNVGGE-FLNTVLSQMKDFGKIAIC  243 (333)
T ss_dssp             TCEEEEEESSCHH-HHHHHHTTEEEEEEEEEC
T ss_pred             CCCeEEEECCChH-HHHHHHHHHhcCCEEEEE
Confidence            4699999887754 467788999999998763

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=94.99  E-value=0.015  Score=55.00  Aligned_cols=92  Identities=14%  Similarity=0.022  Sum_probs=61.5

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEE-cCCCCCCCCCCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFIL-KDARWGHAEGGP  203 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~-~D~~~~~~~~~~  203 (364)
                      + +|++||-+|+|. |.++..+++.     +|+++|.+++.++.+++.         +.+.+ .... .|..........
T Consensus       169 ~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l---------Ga~~vi~~~~~~~~~~~~~~g~g  238 (344)
T 2h6e_A          169 F-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL---------GADYVSEMKDAESLINKLTDGLG  238 (344)
T ss_dssp             C-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH---------TCSEEECHHHHHHHHHHHHTTCC
T ss_pred             C-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh---------CCCEEeccccchHHHHHhhcCCC
Confidence            6 899999999974 5666666542     799999999988888652         11111 0000 111000111237


Q ss_pred             eeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         204 YDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       204 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +|+|+-............+.|++||+++..
T Consensus       239 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~~  268 (344)
T 2h6e_A          239 ASIAIDLVGTEETTYNLGKLLAQEGAIILV  268 (344)
T ss_dssp             EEEEEESSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred             ccEEEECCCChHHHHHHHHHhhcCCEEEEe
Confidence            999998877776788899999999998863

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=94.86  E-value=0.029  Score=53.08  Aligned_cols=92  Identities=11%  Similarity=-0.051  Sum_probs=61.2

Q ss_pred             CCCCCEEEEECCC--ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC---CC--CC
Q psy7830         132 LQNGSRVLDIGSG--QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG---HA--EG  201 (364)
Q Consensus       132 l~~g~~VLDiGcG--sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~---~~--~~  201 (364)
                      +++|++||-+|++  .|..+..+++.   +|+++|.+++.++.+++         ++.. ..+-..|..+.   ..  ..
T Consensus       167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~---------~g~~-~~~d~~~~~~~~~~~~~~~~  236 (347)
T 2hcy_A          167 LMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS---------IGGE-VFIDFTKEKDIVGAVLKATD  236 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH---------TTCC-EEEETTTCSCHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH---------cCCc-eEEecCccHhHHHHHHHHhC
Confidence            6889999999983  45666666554   99999999888776654         1111 11111111110   00  01


Q ss_pred             CCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +.+|+|+.+.......+...+.|++||+++..
T Consensus       237 ~~~D~vi~~~g~~~~~~~~~~~l~~~G~iv~~  268 (347)
T 2hcy_A          237 GGAHGVINVSVSEAAIEASTRYVRANGTTVLV  268 (347)
T ss_dssp             SCEEEEEECSSCHHHHHHHTTSEEEEEEEEEC
T ss_pred             CCCCEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence            26999998887777888899999999998763

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=94.83  E-value=0.053  Score=52.92  Aligned_cols=59  Identities=8%  Similarity=-0.041  Sum_probs=47.9

Q ss_pred             CCCCCEEEEECCCccHHHHHHH-cc-----eEEEEeCCHHHHHHHHHHHHh--cCCCCCCC-CCEEEEEcCC
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKE-WL-----SSVRQLLLPETLNNSLKNIKI--SRPDLLQS-KTLEFILKDA  194 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la-~~-----~V~~vDis~~~l~~a~~~~~~--~~~~~l~~-~~v~~~~~D~  194 (364)
                      ++++..|+|+||+.|..+..++ +.     +|+++|.+|...+..++|+..  |.    +. ++++++..-+
T Consensus       224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~----~~~~~v~~~~~al  291 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDT----NFASRITVHGCGA  291 (409)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTS----TTGGGEEEECSEE
T ss_pred             cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhcc----CCCCCEEEEEeEE
Confidence            4688999999999999998877 32     899999999999999999986  21    13 5788776544

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=94.80  E-value=0.018  Score=54.79  Aligned_cols=69  Identities=13%  Similarity=0.045  Sum_probs=52.7

Q ss_pred             CEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC---CCCeeEE
Q psy7830         136 SRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE---GGPYDVI  207 (364)
Q Consensus       136 ~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~---~~~fD~I  207 (364)
                      .+++|+.||.|.++..+...     .|.++|+++.+.+.-+.|..          ...++.+|+.+....   ...+|++
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~----------~~~~~~~DI~~~~~~~~~~~~~D~l   73 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP----------ETNLLNRNIQQLTPQVIKKWNVDTI   73 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT----------TSCEECCCGGGCCHHHHHHTTCCEE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC----------CCceeccccccCCHHHhccCCCCEE
Confidence            47999999999999887654     57899999999988888763          234567887765432   1268999


Q ss_pred             EEccChH
Q psy7830         208 FFGAGTT  214 (364)
Q Consensus       208 i~~~~~~  214 (364)
                      +...+|+
T Consensus        74 ~ggpPCQ   80 (333)
T 4h0n_A           74 LMSPPCQ   80 (333)
T ss_dssp             EECCCCC
T ss_pred             EecCCCc
Confidence            9888875

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=94.76  E-value=0.039  Score=51.99  Aligned_cols=94  Identities=16%  Similarity=0.068  Sum_probs=62.4

Q ss_pred             CCCCCEEEEECCCcc-HHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC-EEEEEcCCCCC---CCCCC
Q psy7830         132 LQNGSRVLDIGSGQG-YMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKT-LEFILKDARWG---HAEGG  202 (364)
Q Consensus       132 l~~g~~VLDiGcGsG-~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~-v~~~~~D~~~~---~~~~~  202 (364)
                      +++|++||-+|+|++ .++..+++.    +|+++|.+++.++.+++.         +.+. +.....|..+.   .....
T Consensus       161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~---------Ga~~~i~~~~~~~~~~v~~~t~g~  231 (348)
T 4eez_A          161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKI---------GADVTINSGDVNPVDEIKKITGGL  231 (348)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHT---------TCSEEEEC-CCCHHHHHHHHTTSS
T ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhc---------CCeEEEeCCCCCHHHHhhhhcCCC
Confidence            689999999999874 444444443    999999999988777652         2111 11111121110   01123


Q ss_pred             CeeEEEEccChHHHHHHHHhccCCCcEEEEEE
Q psy7830         203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      .+|.++........+....+.|+++|++++.-
T Consensus       232 g~d~~~~~~~~~~~~~~~~~~l~~~G~~v~~g  263 (348)
T 4eez_A          232 GVQSAIVCAVARIAFEQAVASLKPMGKMVAVA  263 (348)
T ss_dssp             CEEEEEECCSCHHHHHHHHHTEEEEEEEEECC
T ss_pred             CceEEEEeccCcchhheeheeecCCceEEEEe
Confidence            58888887777778888999999999988643

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=94.68  E-value=0.076  Score=49.51  Aligned_cols=86  Identities=16%  Similarity=0.053  Sum_probs=57.7

Q ss_pred             EEEEECC--CccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC-CCCCCCeeEEEEc
Q psy7830         137 RVLDIGS--GQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG-HAEGGPYDVIFFG  210 (364)
Q Consensus       137 ~VLDiGc--GsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~-~~~~~~fD~Ii~~  210 (364)
                      +||-.|+  |.|..+..+++.   +|++++.+++..+.+++.         +.+.+ +...+.... ....+.+|+|+-.
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~l---------Ga~~v-i~~~~~~~~~~~~~~~~d~v~d~  218 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSL---------GANRI-LSRDEFAESRPLEKQLWAGAIDT  218 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH---------TCSEE-EEGGGSSCCCSSCCCCEEEEEES
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc---------CCCEE-EecCCHHHHHhhcCCCccEEEEC
Confidence            4999997  347777777776   999999999988888752         11111 111121110 1113579998876


Q ss_pred             cChHHHHHHHHhccCCCcEEEEE
Q psy7830         211 AGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       211 ~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ..-. ......+.|+++|+++..
T Consensus       219 ~g~~-~~~~~~~~l~~~G~iv~~  240 (324)
T 3nx4_A          219 VGDK-VLAKVLAQMNYGGCVAAC  240 (324)
T ss_dssp             SCHH-HHHHHHHTEEEEEEEEEC
T ss_pred             CCcH-HHHHHHHHHhcCCEEEEE
Confidence            6544 778889999999998864

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=94.66  E-value=0.027  Score=53.38  Aligned_cols=89  Identities=19%  Similarity=0.175  Sum_probs=60.3

Q ss_pred             CCCEEEEEC-CCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc--CCCCCC--CCCCCe
Q psy7830         134 NGSRVLDIG-SGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK--DARWGH--AEGGPY  204 (364)
Q Consensus       134 ~g~~VLDiG-cGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~--D~~~~~--~~~~~f  204 (364)
                      +|++||-+| +|. |..+..+++.   +|++++.+++.++.+++. .        .+.+  +..  |..+..  .....+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l-G--------a~~v--i~~~~~~~~~~~~~~~~g~  218 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKM-G--------ADIV--LNHKESLLNQFKTQGIELV  218 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHH-T--------CSEE--ECTTSCHHHHHHHHTCCCE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc-C--------CcEE--EECCccHHHHHHHhCCCCc
Confidence            899999994 443 6666666665   999999999988888762 1        1111  111  100000  012469


Q ss_pred             eEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         205 DVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       205 D~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      |+|+-+......+....+.|+++|+++..
T Consensus       219 Dvv~d~~g~~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          219 DYVFCTFNTDMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             EEEEESSCHHHHHHHHHHHEEEEEEEEES
T ss_pred             cEEEECCCchHHHHHHHHHhccCCEEEEE
Confidence            99998777777778899999999999753

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=94.64  E-value=0.099  Score=49.33  Aligned_cols=91  Identities=13%  Similarity=0.075  Sum_probs=60.5

Q ss_pred             CCCCCEEEEECCCcc--HHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC---CC-CCC
Q psy7830         132 LQNGSRVLDIGSGQG--YMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW---GH-AEG  201 (364)
Q Consensus       132 l~~g~~VLDiGcGsG--~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~---~~-~~~  201 (364)
                      +++|++||-.|+|+|  ..+..+++.    +|+++|.+++.++.+++.         +. ...+...+...   .. ...
T Consensus       168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~---------g~-~~~~~~~~~~~~~~~~~~~~  237 (347)
T 1jvb_A          168 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA---------GA-DYVINASMQDPLAEIRRITE  237 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH---------TC-SEEEETTTSCHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh---------CC-CEEecCCCccHHHHHHHHhc
Confidence            789999999999844  444444432    899999999988877542         11 11111111100   00 011


Q ss_pred             -CCeeEEEEccChHHHHHHHHhccCCCcEEEE
Q psy7830         202 -GPYDVIFFGAGTTEVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       202 -~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi  232 (364)
                       +.+|+|+.+...........+.|+++|++++
T Consensus       238 ~~~~d~vi~~~g~~~~~~~~~~~l~~~G~iv~  269 (347)
T 1jvb_A          238 SKGVDAVIDLNNSEKTLSVYPKALAKQGKYVM  269 (347)
T ss_dssp             TSCEEEEEESCCCHHHHTTGGGGEEEEEEEEE
T ss_pred             CCCceEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence             4799999888777678888999999999876

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=94.61  E-value=0.15  Score=47.50  Aligned_cols=89  Identities=19%  Similarity=0.091  Sum_probs=57.7

Q ss_pred             CCCCCEEEEEC-CCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC-CCCCCCCee
Q psy7830         132 LQNGSRVLDIG-SGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW-GHAEGGPYD  205 (364)
Q Consensus       132 l~~g~~VLDiG-cGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~-~~~~~~~fD  205 (364)
                      +++|++||-+| +|. |..+..+++.   +|++++ ++...+.+++         ++.+.  ++..+-.+ ....-..+|
T Consensus       150 ~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~---------lGa~~--~i~~~~~~~~~~~~~g~D  217 (321)
T 3tqh_A          150 VKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKA---------LGAEQ--CINYHEEDFLLAISTPVD  217 (321)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHH---------HTCSE--EEETTTSCHHHHCCSCEE
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHH---------cCCCE--EEeCCCcchhhhhccCCC
Confidence            78999999997 554 7777777776   888887 4554555544         22221  22211111 111124699


Q ss_pred             EEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         206 VIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       206 ~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +|+-...-... ....+.|++||+++..
T Consensus       218 ~v~d~~g~~~~-~~~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          218 AVIDLVGGDVG-IQSIDCLKETGCIVSV  244 (321)
T ss_dssp             EEEESSCHHHH-HHHGGGEEEEEEEEEC
T ss_pred             EEEECCCcHHH-HHHHHhccCCCEEEEe
Confidence            99977766655 8889999999998864

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=94.55  E-value=0.029  Score=53.14  Aligned_cols=72  Identities=15%  Similarity=0.055  Sum_probs=54.2

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc-----eE-EEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC---CCC
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL-----SS-VRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE---GGP  203 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~-----~V-~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~---~~~  203 (364)
                      +...+|+|+.||.|.++..+...     .| .++|+++.+++..+.|...         .  ++.+|+.+....   ...
T Consensus         8 ~~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~---------~--~~~~DI~~~~~~~i~~~~   76 (327)
T 3qv2_A            8 QKQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE---------E--VQVKNLDSISIKQIESLN   76 (327)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC---------C--CBCCCTTTCCHHHHHHTC
T ss_pred             CCCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC---------C--cccCChhhcCHHHhccCC
Confidence            34568999999999999888765     46 6999999999998888733         1  456787765432   126


Q ss_pred             eeEEEEccChHH
Q psy7830         204 YDVIFFGAGTTE  215 (364)
Q Consensus       204 fD~Ii~~~~~~~  215 (364)
                      +|+++...+|+.
T Consensus        77 ~Dil~ggpPCQ~   88 (327)
T 3qv2_A           77 CNTWFMSPPCQP   88 (327)
T ss_dssp             CCEEEECCCCTT
T ss_pred             CCEEEecCCccC
Confidence            899998877654

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=94.53  E-value=0.083  Score=49.81  Aligned_cols=90  Identities=14%  Similarity=0.107  Sum_probs=61.6

Q ss_pred             CCCCCEEEEECC--CccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC------CCC
Q psy7830         132 LQNGSRVLDIGS--GQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG------HAE  200 (364)
Q Consensus       132 l~~g~~VLDiGc--GsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~------~~~  200 (364)
                      +++|++||-.|+  |.|..+..+++.   +|+++|.+++.++.+++ +        +...  ++...-.+.      ...
T Consensus       164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~-~--------ga~~--~~d~~~~~~~~~~~~~~~  232 (343)
T 2eih_A          164 VRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKA-L--------GADE--TVNYTHPDWPKEVRRLTG  232 (343)
T ss_dssp             CCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-H--------TCSE--EEETTSTTHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-c--------CCCE--EEcCCcccHHHHHHHHhC
Confidence            678999999998  456777777765   99999999998888764 2        1111  111110010      011


Q ss_pred             CCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         201 GGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ...+|+|+.+.. ........+.|+++|++++.
T Consensus       233 ~~~~d~vi~~~g-~~~~~~~~~~l~~~G~~v~~  264 (343)
T 2eih_A          233 GKGADKVVDHTG-ALYFEGVIKATANGGRIAIA  264 (343)
T ss_dssp             TTCEEEEEESSC-SSSHHHHHHHEEEEEEEEES
T ss_pred             CCCceEEEECCC-HHHHHHHHHhhccCCEEEEE
Confidence            246999998877 56677888999999998753

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=94.47  E-value=0.03  Score=55.90  Aligned_cols=73  Identities=15%  Similarity=0.040  Sum_probs=54.2

Q ss_pred             CCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC------------
Q psy7830         135 GSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA------------  199 (364)
Q Consensus       135 g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~------------  199 (364)
                      ..+++|+.||.|.++..+.+.   .|.++|+++.+++.-+.|...       .+...++.+|+.....            
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~-------~p~~~~~~~DI~~i~~~~~~~~~~~~~~  160 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYC-------DPATHHFNEDIRDITLSHQEGVSDEAAA  160 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCC-------CTTTCEEESCTHHHHCTTCTTSCHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhccc-------CCCcceeccchhhhhhccccccchhhHH
Confidence            468999999999999988877   689999999998888877632       1234466788765421            


Q ss_pred             -----CCCCeeEEEEccChH
Q psy7830         200 -----EGGPYDVIFFGAGTT  214 (364)
Q Consensus       200 -----~~~~fD~Ii~~~~~~  214 (364)
                           ....+|+|+...+|+
T Consensus       161 ~~i~~~~~~~Dvl~gGpPCQ  180 (482)
T 3me5_A          161 EHIRQHIPEHDVLLAGFPCQ  180 (482)
T ss_dssp             HHHHHHSCCCSEEEEECCCC
T ss_pred             hhhhhcCCCCCEEEecCCCc
Confidence                 114689998877764

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=94.41  E-value=0.068  Score=50.00  Aligned_cols=92  Identities=17%  Similarity=0.177  Sum_probs=61.0

Q ss_pred             CCCCCEEEEECC-C-ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC--CC---CCCC
Q psy7830         132 LQNGSRVLDIGS-G-QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR--WG---HAEG  201 (364)
Q Consensus       132 l~~g~~VLDiGc-G-sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~--~~---~~~~  201 (364)
                      +++|++||-.|+ | .|..+..+++.   +|++++.+++.++.+++.         +. ...+...+..  +.   ....
T Consensus       138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~---------Ga-~~~~~~~~~~~~~~~~~~~~~  207 (325)
T 3jyn_A          138 VKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKAL---------GA-WETIDYSHEDVAKRVLELTDG  207 (325)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH---------TC-SEEEETTTSCHHHHHHHHTTT
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc---------CC-CEEEeCCCccHHHHHHHHhCC
Confidence            678999999983 3 46666666665   999999999988888652         11 1111111110  00   0112


Q ss_pred             CCeeEEEEccChHHHHHHHHhccCCCcEEEEEE
Q psy7830         202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ..+|+|+.+... .......+.|++||++++.-
T Consensus       208 ~g~Dvvid~~g~-~~~~~~~~~l~~~G~iv~~g  239 (325)
T 3jyn_A          208 KKCPVVYDGVGQ-DTWLTSLDSVAPRGLVVSFG  239 (325)
T ss_dssp             CCEEEEEESSCG-GGHHHHHTTEEEEEEEEECC
T ss_pred             CCceEEEECCCh-HHHHHHHHHhcCCCEEEEEe
Confidence            469999987665 55678889999999988643

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=94.31  E-value=0.14  Score=48.31  Aligned_cols=90  Identities=19%  Similarity=0.144  Sum_probs=61.1

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC------CCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG------HAE  200 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~------~~~  200 (364)
                      + +|++||-+|+|. |..+..+++.    +|+++|.+++.++.+++.         +.+.  ++..+..+.      ...
T Consensus       166 ~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~---------Ga~~--~~~~~~~~~~~~v~~~~~  233 (348)
T 2d8a_A          166 I-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV---------GADY--VINPFEEDVVKEVMDITD  233 (348)
T ss_dssp             C-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH---------TCSE--EECTTTSCHHHHHHHHTT
T ss_pred             C-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh---------CCCE--EECCCCcCHHHHHHHHcC
Confidence            5 899999999964 6666666664    799999999988887642         1111  111111110      011


Q ss_pred             CCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         201 GGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ...+|+|+.............+.|+++|+++..
T Consensus       234 g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~  266 (348)
T 2d8a_A          234 GNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLL  266 (348)
T ss_dssp             TSCEEEEEECSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence            236999998877767788889999999998763

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=94.23  E-value=0.12  Score=49.07  Aligned_cols=85  Identities=18%  Similarity=0.111  Sum_probs=56.5

Q ss_pred             CCEEEEECCCc-cHHHHHHHcc---eEEEEeCCH---HHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC----CCCC
Q psy7830         135 GSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLP---ETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA----EGGP  203 (364)
Q Consensus       135 g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~---~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~----~~~~  203 (364)
                      |++||-+|+|. |..+..+++.   +|+++|.++   +.++.+++.         +.+.+  - .+  +...    ....
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~---------ga~~v--~-~~--~~~~~~~~~~~~  246 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEET---------KTNYY--N-SS--NGYDKLKDSVGK  246 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHH---------TCEEE--E-CT--TCSHHHHHHHCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHh---------CCcee--c-hH--HHHHHHHHhCCC
Confidence            99999999843 4445555554   999999998   777666542         11112  1 11  1110    0146


Q ss_pred             eeEEEEccChHHHH-HHHHhccCCCcEEEEE
Q psy7830         204 YDVIFFGAGTTEVS-KTILSQLKPNGRIVAP  233 (364)
Q Consensus       204 fD~Ii~~~~~~~l~-~~l~~~LkpGG~Lvi~  233 (364)
                      +|+|+.+....... +...+.|+++|++++.
T Consensus       247 ~d~vid~~g~~~~~~~~~~~~l~~~G~iv~~  277 (366)
T 2cdc_A          247 FDVIIDATGADVNILGNVIPLLGRNGVLGLF  277 (366)
T ss_dssp             EEEEEECCCCCTHHHHHHGGGEEEEEEEEEC
T ss_pred             CCEEEECCCChHHHHHHHHHHHhcCCEEEEE
Confidence            99999887766566 8889999999998764

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.19  E-value=0.13  Score=47.92  Aligned_cols=91  Identities=14%  Similarity=0.120  Sum_probs=59.5

Q ss_pred             CCCCCEEEEECC--CccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC--C-C--CCCC
Q psy7830         132 LQNGSRVLDIGS--GQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR--W-G--HAEG  201 (364)
Q Consensus       132 l~~g~~VLDiGc--GsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~--~-~--~~~~  201 (364)
                      +++|++||-.|+  |.|..+..+++.   +|+++|.+++.++.+++ +..         ...+...|..  + .  ....
T Consensus       138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~-~g~---------~~~~~~~~~~~~~~~~~~~~~  207 (327)
T 1qor_A          138 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK-AGA---------WQVINYREEDLVERLKEITGG  207 (327)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-HTC---------SEEEETTTSCHHHHHHHHTTT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCC---------CEEEECCCccHHHHHHHHhCC
Confidence            678999999994  345555555554   99999999988887765 211         1111111110  0 0  0112


Q ss_pred             CCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ..+|+|+.+.. ........+.|++||++++.
T Consensus       208 ~~~D~vi~~~g-~~~~~~~~~~l~~~G~iv~~  238 (327)
T 1qor_A          208 KKVRVVYDSVG-RDTWERSLDCLQRRGLMVSF  238 (327)
T ss_dssp             CCEEEEEECSC-GGGHHHHHHTEEEEEEEEEC
T ss_pred             CCceEEEECCc-hHHHHHHHHHhcCCCEEEEE
Confidence            36999998877 66678888999999998763

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=94.12  E-value=0.24  Score=47.76  Aligned_cols=91  Identities=15%  Similarity=0.051  Sum_probs=59.2

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC------CCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG------HAE  200 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~------~~~  200 (364)
                      +++|++||-+|+|. |.+++.+++.    +|+++|.+++.++.+++.         +.+.  ++..+-.+.      ...
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l---------Ga~~--vi~~~~~~~~~~i~~~t~  279 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL---------GADH--VIDPTKENFVEAVLDYTN  279 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH---------TCSE--EECTTTSCHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc---------CCCE--EEcCCCCCHHHHHHHHhC
Confidence            67899999999875 6666777665    799999999998888653         2111  111111110      011


Q ss_pred             CCCeeEEEEccChH-HHHHHHHhcc----CCCcEEEEE
Q psy7830         201 GGPYDVIFFGAGTT-EVSKTILSQL----KPNGRIVAP  233 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~-~l~~~l~~~L----kpGG~Lvi~  233 (364)
                      ...+|+|+-..... .....+.+.|    ++||++++.
T Consensus       280 g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~  317 (404)
T 3ip1_A          280 GLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIV  317 (404)
T ss_dssp             TCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred             CCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEe
Confidence            23699999766555 3445555555    999998873

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=93.95  E-value=0.046  Score=50.59  Aligned_cols=88  Identities=19%  Similarity=0.159  Sum_probs=58.6

Q ss_pred             CCCCCEEEEECC--CccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC-CCCCCCCCCee
Q psy7830         132 LQNGSRVLDIGS--GQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA-RWGHAEGGPYD  205 (364)
Q Consensus       132 l~~g~~VLDiGc--GsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~-~~~~~~~~~fD  205 (364)
                      +++|++||-+|+  |.|..+..+++.   +|++++.+++.++.+++         ++.+.+  +..+- .+....-..+|
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~---------~ga~~~--~~~~~~~~~~~~~~~~d  191 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA---------LGAEEA--ATYAEVPERAKAWGGLD  191 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH---------TTCSEE--EEGGGHHHHHHHTTSEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh---------cCCCEE--EECCcchhHHHHhcCce
Confidence            689999999997  346666666665   99999999988877754         222211  11110 00000014699


Q ss_pred             EEEEccChHHHHHHHHhccCCCcEEEE
Q psy7830         206 VIFFGAGTTEVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       206 ~Ii~~~~~~~l~~~l~~~LkpGG~Lvi  232 (364)
                      +|+. ... .......+.|+++|+++.
T Consensus       192 ~vid-~g~-~~~~~~~~~l~~~G~~v~  216 (302)
T 1iz0_A          192 LVLE-VRG-KEVEESLGLLAHGGRLVY  216 (302)
T ss_dssp             EEEE-CSC-TTHHHHHTTEEEEEEEEE
T ss_pred             EEEE-CCH-HHHHHHHHhhccCCEEEE
Confidence            9998 554 567788899999999875

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=93.95  E-value=0.082  Score=49.59  Aligned_cols=90  Identities=19%  Similarity=0.204  Sum_probs=59.6

Q ss_pred             CCCCCEEEEECC--CccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC------CCC
Q psy7830         132 LQNGSRVLDIGS--GQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG------HAE  200 (364)
Q Consensus       132 l~~g~~VLDiGc--GsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~------~~~  200 (364)
                      +++|++||-+|+  |.|..+..+++.   +|++++.+++.++.+++         ++.+ . ++..+..+.      ...
T Consensus       146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~---------~ga~-~-~~~~~~~~~~~~~~~~~~  214 (334)
T 3qwb_A          146 VKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKE---------YGAE-Y-LINASKEDILRQVLKFTN  214 (334)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH---------TTCS-E-EEETTTSCHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---------cCCc-E-EEeCCCchHHHHHHHHhC
Confidence            678999999994  335666666665   99999999998887765         2211 1 121111110      011


Q ss_pred             CCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         201 GGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ...+|+|+.+... .......+.|++||++++.
T Consensus       215 ~~g~D~vid~~g~-~~~~~~~~~l~~~G~iv~~  246 (334)
T 3qwb_A          215 GKGVDASFDSVGK-DTFEISLAALKRKGVFVSF  246 (334)
T ss_dssp             TSCEEEEEECCGG-GGHHHHHHHEEEEEEEEEC
T ss_pred             CCCceEEEECCCh-HHHHHHHHHhccCCEEEEE
Confidence            2469999977664 5667788999999998863

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=93.61  E-value=0.075  Score=50.13  Aligned_cols=89  Identities=19%  Similarity=0.121  Sum_probs=59.5

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC---CC--CC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG---HA--EG  201 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~---~~--~~  201 (364)
                      + +|++||-+|+|. |..+..+++.    +|+++|.+++.++.+++.  .        +.  ++..+-.+.   ..  ..
T Consensus       163 ~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l--a--------~~--v~~~~~~~~~~~~~~~~~  229 (343)
T 2dq4_A          163 V-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY--A--------DR--LVNPLEEDLLEVVRRVTG  229 (343)
T ss_dssp             C-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT--C--------SE--EECTTTSCHHHHHHHHHS
T ss_pred             C-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh--H--------Hh--ccCcCccCHHHHHHHhcC
Confidence            5 899999999864 5666666664    799999998877666542  1        11  111110000   00  02


Q ss_pred             CCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ..+|+|+-........+...+.|+++|++++.
T Consensus       230 ~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~  261 (343)
T 2dq4_A          230 SGVEVLLEFSGNEAAIHQGLMALIPGGEARIL  261 (343)
T ss_dssp             SCEEEEEECSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence            36999998777666778889999999998753

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=93.50  E-value=0.4  Score=45.50  Aligned_cols=90  Identities=17%  Similarity=0.124  Sum_probs=61.0

Q ss_pred             CCCCCEEEEEC--CCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC---C--CCC
Q psy7830         132 LQNGSRVLDIG--SGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG---H--AEG  201 (364)
Q Consensus       132 l~~g~~VLDiG--cGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~---~--~~~  201 (364)
                      +++|++||-+|  .|.|..+..+++.   +|++++.+++.++.+++ +        +.+.  ++..+-.+.   .  ...
T Consensus       161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~-~--------Ga~~--~~~~~~~~~~~~~~~~~~  229 (362)
T 2c0c_A          161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS-L--------GCDR--PINYKTEPVGTVLKQEYP  229 (362)
T ss_dssp             CCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-T--------TCSE--EEETTTSCHHHHHHHHCT
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-c--------CCcE--EEecCChhHHHHHHHhcC
Confidence            78999999999  3457777777765   99999999988887765 2        2111  121111110   0  012


Q ss_pred             CCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ..+|+|+.+... .......+.|+++|++++.
T Consensus       230 ~g~D~vid~~g~-~~~~~~~~~l~~~G~iv~~  260 (362)
T 2c0c_A          230 EGVDVVYESVGG-AMFDLAVDALATKGRLIVI  260 (362)
T ss_dssp             TCEEEEEECSCT-HHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCEEEECCCH-HHHHHHHHHHhcCCEEEEE
Confidence            469999977664 5677888999999998763

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=93.44  E-value=0.087  Score=49.73  Aligned_cols=90  Identities=16%  Similarity=0.147  Sum_probs=59.5

Q ss_pred             CCCCCEEEEECC--CccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC--CCCC---CCCC
Q psy7830         132 LQNGSRVLDIGS--GQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD--ARWG---HAEG  201 (364)
Q Consensus       132 l~~g~~VLDiGc--GsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D--~~~~---~~~~  201 (364)
                      +++|++||-.|+  |.|..+..+++.   +|++++.+++.++.+++.         +.+.  ++..+  ..+.   ....
T Consensus       157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~---------ga~~--v~~~~~~~~~~v~~~~~~  225 (342)
T 4eye_A          157 LRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSV---------GADI--VLPLEEGWAKAVREATGG  225 (342)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH---------TCSE--EEESSTTHHHHHHHHTTT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc---------CCcE--EecCchhHHHHHHHHhCC
Confidence            678999999997  346666667665   999999999888877652         1111  12111  1000   0112


Q ss_pred             CCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ..+|+|+-+.... ......+.|++||++++.
T Consensus       226 ~g~Dvvid~~g~~-~~~~~~~~l~~~G~iv~~  256 (342)
T 4eye_A          226 AGVDMVVDPIGGP-AFDDAVRTLASEGRLLVV  256 (342)
T ss_dssp             SCEEEEEESCC---CHHHHHHTEEEEEEEEEC
T ss_pred             CCceEEEECCchh-HHHHHHHhhcCCCEEEEE
Confidence            3699999766543 567788999999998864

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=93.09  E-value=0.36  Score=45.68  Aligned_cols=90  Identities=17%  Similarity=0.054  Sum_probs=57.8

Q ss_pred             CCCCCEEEEECCC--ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC------CC
Q psy7830         132 LQNGSRVLDIGSG--QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH------AE  200 (364)
Q Consensus       132 l~~g~~VLDiGcG--sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~------~~  200 (364)
                      +++|++||-.|++  .|..+..+++.   +|++++.+++.++.+++         ++.. . ++..+-.+..      ..
T Consensus       168 ~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~---------~ga~-~-~~d~~~~~~~~~~~~~~~  236 (351)
T 1yb5_A          168 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ---------NGAH-E-VFNHREVNYIDKIKKYVG  236 (351)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH---------TTCS-E-EEETTSTTHHHHHHHHHC
T ss_pred             CCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHH---------cCCC-E-EEeCCCchHHHHHHHHcC
Confidence            6789999999973  35555555554   99999999988876643         2211 1 1111111100      01


Q ss_pred             CCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         201 GGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ...+|+|+.+.... ......+.|++||++++.
T Consensus       237 ~~~~D~vi~~~G~~-~~~~~~~~l~~~G~iv~~  268 (351)
T 1yb5_A          237 EKGIDIIIEMLANV-NLSKDLSLLSHGGRVIVV  268 (351)
T ss_dssp             TTCEEEEEESCHHH-HHHHHHHHEEEEEEEEEC
T ss_pred             CCCcEEEEECCChH-HHHHHHHhccCCCEEEEE
Confidence            23699999876544 456778999999998763

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=92.85  E-value=0.35  Score=47.52  Aligned_cols=90  Identities=20%  Similarity=0.224  Sum_probs=60.8

Q ss_pred             CCCCCEEEEECC-C-ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC---------
Q psy7830         132 LQNGSRVLDIGS-G-QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG---------  197 (364)
Q Consensus       132 l~~g~~VLDiGc-G-sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~---------  197 (364)
                      +++|++||-+|+ | .|.++..+++.   +|++++.+++.++.+++.         +.+.  ++...-.+.         
T Consensus       226 ~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~l---------Ga~~--vi~~~~~d~~~~~~~~~~  294 (456)
T 3krt_A          226 MKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAM---------GAEA--IIDRNAEGYRFWKDENTQ  294 (456)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---------TCCE--EEETTTTTCCSEEETTEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhh---------CCcE--EEecCcCccccccccccc
Confidence            689999999997 3 36677777766   899999999988888652         1111  111110000         


Q ss_pred             --------------CCCCCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         198 --------------HAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       198 --------------~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                                    ......+|+|+-.... ..+....+.|++||++++.
T Consensus       295 ~~~~~~~~~~~i~~~t~g~g~Dvvid~~G~-~~~~~~~~~l~~~G~iv~~  343 (456)
T 3krt_A          295 DPKEWKRFGKRIRELTGGEDIDIVFEHPGR-ETFGASVFVTRKGGTITTC  343 (456)
T ss_dssp             CHHHHHHHHHHHHHHHTSCCEEEEEECSCH-HHHHHHHHHEEEEEEEEES
T ss_pred             chHHHHHHHHHHHHHhCCCCCcEEEEcCCc-hhHHHHHHHhhCCcEEEEE
Confidence                          0112479999877665 6677888999999998863

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=92.84  E-value=0.26  Score=46.57  Aligned_cols=91  Identities=20%  Similarity=0.161  Sum_probs=58.3

Q ss_pred             CCCCCEEEEECC--CccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC--C-C--CCCC
Q psy7830         132 LQNGSRVLDIGS--GQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR--W-G--HAEG  201 (364)
Q Consensus       132 l~~g~~VLDiGc--GsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~--~-~--~~~~  201 (364)
                      +++|++||-.|+  |.|..+..+++.   +|+++|.+++.++.+++ +        +. ...+...+..  + .  ....
T Consensus       160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-~--------g~-~~~~~~~~~~~~~~~~~~~~~  229 (354)
T 2j8z_A          160 VQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEK-L--------GA-AAGFNYKKEDFSEATLKFTKG  229 (354)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-H--------TC-SEEEETTTSCHHHHHHHHTTT
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-c--------CC-cEEEecCChHHHHHHHHHhcC
Confidence            678999999984  335555555554   99999999998888743 2        11 1111111110  0 0  0112


Q ss_pred             CCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ..+|+|+.+.... ......+.|++||++++.
T Consensus       230 ~~~d~vi~~~G~~-~~~~~~~~l~~~G~iv~~  260 (354)
T 2j8z_A          230 AGVNLILDCIGGS-YWEKNVNCLALDGRWVLY  260 (354)
T ss_dssp             SCEEEEEESSCGG-GHHHHHHHEEEEEEEEEC
T ss_pred             CCceEEEECCCch-HHHHHHHhccCCCEEEEE
Confidence            3699999887665 566778999999998863

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=92.66  E-value=0.15  Score=52.85  Aligned_cols=100  Identities=13%  Similarity=0.070  Sum_probs=63.3

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----------------eEEEEeCCHHHHHHHHHH--------------HHhcCCC--
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----------------SSVRQLLLPETLNNSLKN--------------IKISRPD--  180 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----------------~V~~vDis~~~l~~a~~~--------------~~~~~~~--  180 (364)
                      ++.-+|+|+|.|+|+..+.+.+.                +++++|..|-..+..++.              +......  
T Consensus        57 ~~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~  136 (689)
T 3pvc_A           57 QQSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLA  136 (689)
T ss_dssp             SSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCS
T ss_pred             CCceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCC
Confidence            34568999999999987655331                689999955333333321              1111000  


Q ss_pred             ---C--CCC--CCEEEEEcCCCCCCCC-----CCCeeEEEEccCh---------HHHHHHHHhccCCCcEEEE
Q psy7830         181 ---L--LQS--KTLEFILKDARWGHAE-----GGPYDVIFFGAGT---------TEVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       181 ---~--l~~--~~v~~~~~D~~~~~~~-----~~~fD~Ii~~~~~---------~~l~~~l~~~LkpGG~Lvi  232 (364)
                         .  +..  -.+++..+|+.+....     ...+|.++.+...         ..++..+.+++++||.+..
T Consensus       137 ~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t  209 (689)
T 3pvc_A          137 GCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST  209 (689)
T ss_dssp             EEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE
T ss_pred             CceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence               0  011  1467788898654332     3679999997653         4578899999999998764

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=92.63  E-value=0.1  Score=48.79  Aligned_cols=90  Identities=16%  Similarity=0.124  Sum_probs=57.9

Q ss_pred             CCCCC-EEEEECC--CccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC-CCC--CCCCC
Q psy7830         132 LQNGS-RVLDIGS--GQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA-RWG--HAEGG  202 (364)
Q Consensus       132 l~~g~-~VLDiGc--GsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~-~~~--~~~~~  202 (364)
                      +++|+ +||-+|+  |.|..+..+++.   +|++++.+++.++.+++ +        +.+.+ +...+. ...  .....
T Consensus       146 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~-l--------Ga~~~-i~~~~~~~~~~~~~~~~  215 (328)
T 1xa0_A          146 LTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV-L--------GAKEV-LAREDVMAERIRPLDKQ  215 (328)
T ss_dssp             CCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH-T--------TCSEE-EECC---------CCSC
T ss_pred             CCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-c--------CCcEE-EecCCcHHHHHHHhcCC
Confidence            56775 8999997  346667777765   99999999888887764 2        21111 111111 000  01124


Q ss_pred             CeeEEEEccChHHHHHHHHhccCCCcEEEE
Q psy7830         203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi  232 (364)
                      .+|+|+-+..- .......+.|++||++++
T Consensus       216 ~~d~vid~~g~-~~~~~~~~~l~~~G~~v~  244 (328)
T 1xa0_A          216 RWAAAVDPVGG-RTLATVLSRMRYGGAVAV  244 (328)
T ss_dssp             CEEEEEECSTT-TTHHHHHHTEEEEEEEEE
T ss_pred             cccEEEECCcH-HHHHHHHHhhccCCEEEE
Confidence            69999876654 356778899999999876

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=92.54  E-value=0.97  Score=43.29  Aligned_cols=105  Identities=13%  Similarity=0.091  Sum_probs=70.3

Q ss_pred             HHHHHHhccCCCCCEEEEECCCccHHHHHHHcceEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCC
Q psy7830         123 RCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGG  202 (364)
Q Consensus       123 ~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~  202 (364)
                      .+++.+.+ ...+.+||.++.+-|.++..++...++.+.-|--....++.|+..|.   +...++++...-  +.  ...
T Consensus        28 ~ll~~~~~-~~~~~~~~~~~d~~gal~~~~~~~~~~~~~ds~~~~~~~~~n~~~~~---~~~~~~~~~~~~--~~--~~~   99 (375)
T 4dcm_A           28 YLLQQLDD-TEIRGPVLILNDAFGALSCALAEHKPYSIGDSYISELATRENLRLNG---IDESSVKFLDST--AD--YPQ   99 (375)
T ss_dssp             HHHHTTTT-CCCCSCEEEECCSSSHHHHHTGGGCCEEEESCHHHHHHHHHHHHHTT---CCGGGSEEEETT--SC--CCS
T ss_pred             HHHHhhhh-ccCCCCEEEECCCCCHHHHhhccCCceEEEhHHHHHHHHHHHHHHcC---CCccceEecccc--cc--ccc
Confidence            34554432 23557899999999999999876655666546666667788888854   433346655432  11  135


Q ss_pred             CeeEEEEccCh-----HHHHHHHHhccCCCcEEEEEEc
Q psy7830         203 PYDVIFFGAGT-----TEVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       203 ~fD~Ii~~~~~-----~~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      .||+|+...+-     ...+..+...|++|+.+++.-.
T Consensus       100 ~~~~v~~~lpk~~~~l~~~L~~l~~~l~~~~~i~~~g~  137 (375)
T 4dcm_A          100 QPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAK  137 (375)
T ss_dssp             SCSEEEEECCSCHHHHHHHHHHHHTTCCTTSEEEEEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHhhCCCCCEEEEEec
Confidence            79998876543     3467888999999999876544

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=92.48  E-value=0.3  Score=45.59  Aligned_cols=91  Identities=18%  Similarity=0.188  Sum_probs=59.5

Q ss_pred             CCCCCEEEEECC--CccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC--C-C--CCCC
Q psy7830         132 LQNGSRVLDIGS--GQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR--W-G--HAEG  201 (364)
Q Consensus       132 l~~g~~VLDiGc--GsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~--~-~--~~~~  201 (364)
                      +++|++||-.|+  |.|..+..+++.   +|+++|.+++.++.+++ +.        . ...+...+..  + .  ....
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~-~g--------~-~~~~d~~~~~~~~~i~~~~~~  212 (333)
T 1wly_A          143 VKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARK-LG--------C-HHTINYSTQDFAEVVREITGG  212 (333)
T ss_dssp             CCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HT--------C-SEEEETTTSCHHHHHHHHHTT
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cC--------C-CEEEECCCHHHHHHHHHHhCC
Confidence            678999999995  456666666654   99999999988887764 21        1 1111111100  0 0  0012


Q ss_pred             CCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ..+|+|+.+... .......+.|++||+++..
T Consensus       213 ~~~d~vi~~~g~-~~~~~~~~~l~~~G~iv~~  243 (333)
T 1wly_A          213 KGVDVVYDSIGK-DTLQKSLDCLRPRGMCAAY  243 (333)
T ss_dssp             CCEEEEEECSCT-TTHHHHHHTEEEEEEEEEC
T ss_pred             CCCeEEEECCcH-HHHHHHHHhhccCCEEEEE
Confidence            369999987765 5567888999999998753

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=92.39  E-value=0.14  Score=47.76  Aligned_cols=91  Identities=15%  Similarity=0.105  Sum_probs=59.4

Q ss_pred             CCCCC-EEEEECC-C-ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC-CC-C-CCCCC
Q psy7830         132 LQNGS-RVLDIGS-G-QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA-RW-G-HAEGG  202 (364)
Q Consensus       132 l~~g~-~VLDiGc-G-sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~-~~-~-~~~~~  202 (364)
                      +++|+ +||-+|+ | .|..+..+++.   +|++++.+++.++.+++ +        +.+.+ +...+. .. . .....
T Consensus       147 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~-l--------Ga~~v-~~~~~~~~~~~~~~~~~  216 (330)
T 1tt7_A          147 LSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQ-L--------GASEV-ISREDVYDGTLKALSKQ  216 (330)
T ss_dssp             CCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHH-H--------TCSEE-EEHHHHCSSCCCSSCCC
T ss_pred             cCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c--------CCcEE-EECCCchHHHHHHhhcC
Confidence            56775 8999997 3 46666666665   89999999888877765 2        11111 111111 11 0 11124


Q ss_pred             CeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         203 PYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       203 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      .+|+|+-+... .......+.|++||++++.
T Consensus       217 ~~d~vid~~g~-~~~~~~~~~l~~~G~iv~~  246 (330)
T 1tt7_A          217 QWQGAVDPVGG-KQLASLLSKIQYGGSVAVS  246 (330)
T ss_dssp             CEEEEEESCCT-HHHHHHHTTEEEEEEEEEC
T ss_pred             CccEEEECCcH-HHHHHHHHhhcCCCEEEEE
Confidence            69999877665 4677888999999998863

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=91.95  E-value=0.3  Score=46.20  Aligned_cols=91  Identities=16%  Similarity=0.044  Sum_probs=59.5

Q ss_pred             CCCCCEEEEECC-C-ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC-----CCC
Q psy7830         132 LQNGSRVLDIGS-G-QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH-----AEG  201 (364)
Q Consensus       132 l~~g~~VLDiGc-G-sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~-----~~~  201 (364)
                      +++|++||-.|+ | .|..+..+++.   +|+++|.+++.++.+++.         +.+ . ++..+..+..     ...
T Consensus       165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l---------Ga~-~-~~~~~~~~~~~~~~~~~~  233 (353)
T 4dup_A          165 LTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERL---------GAK-R-GINYRSEDFAAVIKAETG  233 (353)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---------TCS-E-EEETTTSCHHHHHHHHHS
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc---------CCC-E-EEeCCchHHHHHHHHHhC
Confidence            678999999953 3 36666666665   999999999988887652         111 1 1111111100     002


Q ss_pred             CCeeEEEEccChHHHHHHHHhccCCCcEEEEEE
Q psy7830         202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ..+|+|+.+.... ......+.|++||++++.-
T Consensus       234 ~g~Dvvid~~g~~-~~~~~~~~l~~~G~iv~~g  265 (353)
T 4dup_A          234 QGVDIILDMIGAA-YFERNIASLAKDGCLSIIA  265 (353)
T ss_dssp             SCEEEEEESCCGG-GHHHHHHTEEEEEEEEECC
T ss_pred             CCceEEEECCCHH-HHHHHHHHhccCCEEEEEE
Confidence            4699999776654 5667888999999988643

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=91.85  E-value=0.1  Score=49.79  Aligned_cols=90  Identities=20%  Similarity=0.106  Sum_probs=56.4

Q ss_pred             CCCCCEEEEEC-CC-ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC---CCCCCC
Q psy7830         132 LQNGSRVLDIG-SG-QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG---HAEGGP  203 (364)
Q Consensus       132 l~~g~~VLDiG-cG-sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~---~~~~~~  203 (364)
                      +++|++||-.| +| .|..+..+++.   +|++++ +++..+.+++         ++.+.  ++..+-.+.   ......
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~---------lGa~~--v~~~~~~~~~~~~~~~~g  248 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRK---------LGADD--VIDYKSGSVEEQLKSLKP  248 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHH---------TTCSE--EEETTSSCHHHHHHTSCC
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHH---------cCCCE--EEECCchHHHHHHhhcCC
Confidence            57899999999 34 36666676665   899988 6666666543         22221  111111110   011246


Q ss_pred             eeEEEEccChH-HHHHHHHhccCCCcEEEEE
Q psy7830         204 YDVIFFGAGTT-EVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       204 fD~Ii~~~~~~-~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +|+|+-+.... .......+.|++||+++..
T Consensus       249 ~D~vid~~g~~~~~~~~~~~~l~~~G~iv~~  279 (375)
T 2vn8_A          249 FDFILDNVGGSTETWAPDFLKKWSGATYVTL  279 (375)
T ss_dssp             BSEEEESSCTTHHHHGGGGBCSSSCCEEEES
T ss_pred             CCEEEECCCChhhhhHHHHHhhcCCcEEEEe
Confidence            99999876655 3456778899999998763

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=91.63  E-value=0.54  Score=44.32  Aligned_cols=92  Identities=18%  Similarity=0.138  Sum_probs=58.5

Q ss_pred             CCCC--CEEEEECCC--ccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC--CCC--C
Q psy7830         132 LQNG--SRVLDIGSG--QGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR--WGH--A  199 (364)
Q Consensus       132 l~~g--~~VLDiGcG--sG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~--~~~--~  199 (364)
                      +++|  ++||-.|++  .|..+..+++.    +|+++|.+++.++.+++.+        +. ...+...+..  +..  .
T Consensus       156 ~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~--------g~-~~~~d~~~~~~~~~~~~~  226 (357)
T 2zb4_A          156 ITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSEL--------GF-DAAINYKKDNVAEQLRES  226 (357)
T ss_dssp             CCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTS--------CC-SEEEETTTSCHHHHHHHH
T ss_pred             CCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc--------CC-ceEEecCchHHHHHHHHh
Confidence            7889  999999983  34555555543    7999999988877776532        11 1111111100  000  0


Q ss_pred             CCCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         200 EGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       200 ~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ..+.+|+|+.+... .......+.|++||++++.
T Consensus       227 ~~~~~d~vi~~~G~-~~~~~~~~~l~~~G~iv~~  259 (357)
T 2zb4_A          227 CPAGVDVYFDNVGG-NISDTVISQMNENSHIILC  259 (357)
T ss_dssp             CTTCEEEEEESCCH-HHHHHHHHTEEEEEEEEEC
T ss_pred             cCCCCCEEEECCCH-HHHHHHHHHhccCcEEEEE
Confidence            11269999987764 5677888999999998863

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=91.40  E-value=0.45  Score=44.75  Aligned_cols=87  Identities=21%  Similarity=0.220  Sum_probs=58.5

Q ss_pred             CCCCCEEEEECC-C-ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC------CC
Q psy7830         132 LQNGSRVLDIGS-G-QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH------AE  200 (364)
Q Consensus       132 l~~g~~VLDiGc-G-sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~------~~  200 (364)
                      +++|++||-+|+ | .|..+..+++.   +|+++ .+++.++.+++.         +.+ . +.  +..+..      ..
T Consensus       148 ~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~l---------Ga~-~-i~--~~~~~~~~~~~~~~  213 (343)
T 3gaz_A          148 VQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDL---------GAT-P-ID--ASREPEDYAAEHTA  213 (343)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHH---------TSE-E-EE--TTSCHHHHHHHHHT
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHc---------CCC-E-ec--cCCCHHHHHHHHhc
Confidence            678999999994 3 36677777766   99999 888887777542         111 1 21  111110      11


Q ss_pred             CCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         201 GGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ...+|+|+-+..- ..+....+.|+++|+++..
T Consensus       214 ~~g~D~vid~~g~-~~~~~~~~~l~~~G~iv~~  245 (343)
T 3gaz_A          214 GQGFDLVYDTLGG-PVLDASFSAVKRFGHVVSC  245 (343)
T ss_dssp             TSCEEEEEESSCT-HHHHHHHHHEEEEEEEEES
T ss_pred             CCCceEEEECCCc-HHHHHHHHHHhcCCeEEEE
Confidence            2469999876663 5677788899999998864

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=90.66  E-value=0.27  Score=47.02  Aligned_cols=89  Identities=13%  Similarity=0.024  Sum_probs=52.9

Q ss_pred             CCCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      ++++|+-+|+|  ..+..+++.      +|+++|.+++.++.+++....         .+.....+.......-..+|+|
T Consensus       165 ~~~~V~ViGaG--~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~---------~~~~~~~~~~~l~~~~~~~DvV  233 (369)
T 2eez_A          165 APASVVILGGG--TVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGG---------RVITLTATEANIKKSVQHADLL  233 (369)
T ss_dssp             CCCEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTT---------SEEEEECCHHHHHHHHHHCSEE
T ss_pred             CCCEEEEECCC--HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCc---------eEEEecCCHHHHHHHHhCCCEE
Confidence            46899999985  444443332      999999999887776543311         2322222211110001358999


Q ss_pred             EEccChHH------HHHHHHhccCCCcEEEEE
Q psy7830         208 FFGAGTTE------VSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       208 i~~~~~~~------l~~~l~~~LkpGG~Lvi~  233 (364)
                      +.+.....      +.+.+.+.+|+||+++..
T Consensus       234 i~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v  265 (369)
T 2eez_A          234 IGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDV  265 (369)
T ss_dssp             EECCC-------CCSCHHHHTTSCTTCEEEEC
T ss_pred             EECCCCCccccchhHHHHHHHhhcCCCEEEEE
Confidence            88776543      256788899999987753

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=90.54  E-value=0.31  Score=50.34  Aligned_cols=100  Identities=14%  Similarity=0.032  Sum_probs=62.4

Q ss_pred             CCCEEEEECCCccHHHHHHHcc----------------eEEEEeC---CHHHHHHHHH-----------HHHhcCCCC--
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL----------------SSVRQLL---LPETLNNSLK-----------NIKISRPDL--  181 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~----------------~V~~vDi---s~~~l~~a~~-----------~~~~~~~~~--  181 (364)
                      +.-+|||+|-|+|+......+.                +++++|.   +++.+..+-.           -+.......  
T Consensus        66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (676)
T 3ps9_A           66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  145 (676)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred             CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence            3358999999999877554221                6899999   6666653322           111111000  


Q ss_pred             -----CC--CCCEEEEEcCCCCCCCC-----CCCeeEEEEccCh---------HHHHHHHHhccCCCcEEEEE
Q psy7830         182 -----LQ--SKTLEFILKDARWGHAE-----GGPYDVIFFGAGT---------TEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       182 -----l~--~~~v~~~~~D~~~~~~~-----~~~fD~Ii~~~~~---------~~l~~~l~~~LkpGG~Lvi~  233 (364)
                           +.  .-.+++..+|+.+....     ...||.|+.+...         ..++..+.++++|||.+...
T Consensus       146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~  218 (676)
T 3ps9_A          146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATF  218 (676)
T ss_dssp             EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEES
T ss_pred             ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence                 00  01355677887653322     3579999997643         34788999999999987743

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=90.46  E-value=0.9  Score=42.84  Aligned_cols=91  Identities=16%  Similarity=0.139  Sum_probs=53.4

Q ss_pred             CCCCCEEEEECC--CccHHHHHHHcc---eEE-EEeCCHH---HHHHHHHHHHhcCCCCCCCCCEEEEE-----cCCCCC
Q psy7830         132 LQNGSRVLDIGS--GQGYMATAKEWL---SSV-RQLLLPE---TLNNSLKNIKISRPDLLQSKTLEFIL-----KDARWG  197 (364)
Q Consensus       132 l~~g~~VLDiGc--GsG~~a~~la~~---~V~-~vDis~~---~l~~a~~~~~~~~~~~l~~~~v~~~~-----~D~~~~  197 (364)
                      +++|++||-+|+  |.|.+++.+++.   +++ .++.++.   ..+.+++         ++.+.+ +..     .++...
T Consensus       165 ~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~---------lGa~~v-i~~~~~~~~~~~~~  234 (357)
T 1zsy_A          165 LQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKS---------LGAEHV-ITEEELRRPEMKNF  234 (357)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHH---------TTCSEE-EEHHHHHSGGGGGT
T ss_pred             cCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHh---------cCCcEE-EecCcchHHHHHHH
Confidence            789999999997  347777777776   444 4555443   3344432         232222 111     111111


Q ss_pred             CCCCCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         198 HAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       198 ~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ....+.+|+|+-...-... ....+.|++||++++.
T Consensus       235 ~~~~~~~Dvvid~~g~~~~-~~~~~~l~~~G~iv~~  269 (357)
T 1zsy_A          235 FKDMPQPRLALNCVGGKSS-TELLRQLARGGTMVTY  269 (357)
T ss_dssp             TSSSCCCSEEEESSCHHHH-HHHHTTSCTTCEEEEC
T ss_pred             HhCCCCceEEEECCCcHHH-HHHHHhhCCCCEEEEE
Confidence            1111249999877665544 4578999999998864

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=90.31  E-value=0.72  Score=44.94  Aligned_cols=92  Identities=16%  Similarity=0.080  Sum_probs=59.6

Q ss_pred             CCCCCEEEEECC-C-ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEcCCCCC--------
Q psy7830         132 LQNGSRVLDIGS-G-QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILKDARWG--------  197 (364)
Q Consensus       132 l~~g~~VLDiGc-G-sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~D~~~~--------  197 (364)
                      +++|++||-.|+ | .|..++.+++.   +|++++.+++.++.+++         ++.+.+ .....|....        
T Consensus       218 ~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~---------lGa~~~i~~~~~~~~~~~~~~~~~~  288 (447)
T 4a0s_A          218 MKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRA---------LGCDLVINRAELGITDDIADDPRRV  288 (447)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH---------TTCCCEEEHHHHTCCTTGGGCHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh---------cCCCEEEeccccccccccccccccc
Confidence            689999999997 3 35666666665   89999999998888754         222221 1111111000        


Q ss_pred             -----------C-CCCCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         198 -----------H-AEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       198 -----------~-~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                                 . .....+|+|+-+... ..+....+.|++||++++.
T Consensus       289 ~~~~~~~~~~v~~~~g~g~Dvvid~~G~-~~~~~~~~~l~~~G~iv~~  335 (447)
T 4a0s_A          289 VETGRKLAKLVVEKAGREPDIVFEHTGR-VTFGLSVIVARRGGTVVTC  335 (447)
T ss_dssp             HHHHHHHHHHHHHHHSSCCSEEEECSCH-HHHHHHHHHSCTTCEEEES
T ss_pred             chhhhHHHHHHHHHhCCCceEEEECCCc-hHHHHHHHHHhcCCEEEEE
Confidence                       0 002469999987665 4567788899999998874

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=90.30  E-value=0.3  Score=46.17  Aligned_cols=91  Identities=16%  Similarity=0.171  Sum_probs=54.9

Q ss_pred             CCCC-CEEEEECC-C-ccHHHHHHHcc---eEEEEeCCHHH----HHHHHHHHHhcCCCCCCCCCEEEEE-----cCCCC
Q psy7830         132 LQNG-SRVLDIGS-G-QGYMATAKEWL---SSVRQLLLPET----LNNSLKNIKISRPDLLQSKTLEFIL-----KDARW  196 (364)
Q Consensus       132 l~~g-~~VLDiGc-G-sG~~a~~la~~---~V~~vDis~~~----l~~a~~~~~~~~~~~l~~~~v~~~~-----~D~~~  196 (364)
                      +++| ++||-+|+ | .|.+++.+++.   +++++..+++.    .+.++    +     ++.+.+ +..     .|..+
T Consensus       164 ~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~----~-----lGa~~v-i~~~~~~~~~~~~  233 (364)
T 1gu7_A          164 LTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLK----E-----LGATQV-ITEDQNNSREFGP  233 (364)
T ss_dssp             CCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHH----H-----HTCSEE-EEHHHHHCGGGHH
T ss_pred             cCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHH----h-----cCCeEE-EecCccchHHHHH
Confidence            6789 99999997 3 36677777776   77777655443    33332    2     222221 111     11111


Q ss_pred             CCC-----CCCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         197 GHA-----EGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       197 ~~~-----~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ...     ....+|+|+-........ ...+.|++||+++..
T Consensus       234 ~i~~~t~~~~~g~Dvvid~~G~~~~~-~~~~~l~~~G~~v~~  274 (364)
T 1gu7_A          234 TIKEWIKQSGGEAKLALNCVGGKSST-GIARKLNNNGLMLTY  274 (364)
T ss_dssp             HHHHHHHHHTCCEEEEEESSCHHHHH-HHHHTSCTTCEEEEC
T ss_pred             HHHHHhhccCCCceEEEECCCchhHH-HHHHHhccCCEEEEe
Confidence            000     124699999877666655 678999999998863

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=90.12  E-value=0.97  Score=42.92  Aligned_cols=88  Identities=10%  Similarity=0.026  Sum_probs=58.8

Q ss_pred             CCCCEEEEECCC--ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC---C--CCCC
Q psy7830         133 QNGSRVLDIGSG--QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG---H--AEGG  202 (364)
Q Consensus       133 ~~g~~VLDiGcG--sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~---~--~~~~  202 (364)
                      ++|++||-+|++  .|..+..+++.   +|+++. +++.++.+++         ++.+.  ++.....+.   .  ...+
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~---------lGa~~--vi~~~~~~~~~~v~~~t~g  230 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKS---------RGAEE--VFDYRAPNLAQTIRTYTKN  230 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHH---------TTCSE--EEETTSTTHHHHHHHHTTT
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHH---------cCCcE--EEECCCchHHHHHHHHccC
Confidence            789999999983  57777777776   888874 7877776654         22221  222111110   0  0124


Q ss_pred             CeeEEEEccChHHHHHHHHhcc-CCCcEEEE
Q psy7830         203 PYDVIFFGAGTTEVSKTILSQL-KPNGRIVA  232 (364)
Q Consensus       203 ~fD~Ii~~~~~~~l~~~l~~~L-kpGG~Lvi  232 (364)
                      .+|+|+-............+.| ++||+++.
T Consensus       231 ~~d~v~d~~g~~~~~~~~~~~l~~~~G~iv~  261 (371)
T 3gqv_A          231 NLRYALDCITNVESTTFCFAAIGRAGGHYVS  261 (371)
T ss_dssp             CCCEEEESSCSHHHHHHHHHHSCTTCEEEEE
T ss_pred             CccEEEECCCchHHHHHHHHHhhcCCCEEEE
Confidence            5999998777767778888888 69999875

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=90.07  E-value=1.3  Score=35.71  Aligned_cols=89  Identities=10%  Similarity=-0.019  Sum_probs=57.6

Q ss_pred             CCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--C--CCCCe
Q psy7830         135 GSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH--A--EGGPY  204 (364)
Q Consensus       135 g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~--~--~~~~f  204 (364)
                      ..+|+=+|||.  ++..+++.      .|+++|.+++.++.+++            ..+.++.+|..+..  .  .-..+
T Consensus         7 ~~~viIiG~G~--~G~~la~~L~~~g~~v~vid~~~~~~~~~~~------------~g~~~i~gd~~~~~~l~~a~i~~a   72 (140)
T 3fwz_A            7 CNHALLVGYGR--VGSLLGEKLLASDIPLVVIETSRTRVDELRE------------RGVRAVLGNAANEEIMQLAHLECA   72 (140)
T ss_dssp             CSCEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH------------TTCEEEESCTTSHHHHHHTTGGGC
T ss_pred             CCCEEEECcCH--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH------------cCCCEEECCCCCHHHHHhcCcccC
Confidence            45788888864  44333332      99999999998877664            14667888876421  1  12468


Q ss_pred             eEEEEccChHH---HHHHHHhccCCCcEEEEEEcCC
Q psy7830         205 DVIFFGAGTTE---VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       205 D~Ii~~~~~~~---l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      |.|++...-..   ..-...+.+.|+..++....+.
T Consensus        73 d~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar~~~~  108 (140)
T 3fwz_A           73 KWLILTIPNGYEAGEIVASARAKNPDIEIIARAHYD  108 (140)
T ss_dssp             SEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEESSH
T ss_pred             CEEEEECCChHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence            98887655432   2334566677888888766554

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=89.98  E-value=0.19  Score=48.26  Aligned_cols=91  Identities=16%  Similarity=0.101  Sum_probs=52.9

Q ss_pred             CCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830         134 NGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF  209 (364)
Q Consensus       134 ~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~  209 (364)
                      ++.+|+-+|+|. |..+...++.   +|+++|.++..++.+++.+..         .+.....+.......-..+|+|+.
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~---------~~~~~~~~~~~l~~~l~~aDvVi~  237 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCG---------RIHTRYSSAYELEGAVKRADLVIG  237 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTT---------SSEEEECCHHHHHHHHHHCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCC---------eeEeccCCHHHHHHHHcCCCEEEE
Confidence            578999999854 3223333322   899999999988777654321         222211111111000125799987


Q ss_pred             ccChHH------HHHHHHhccCCCcEEEEE
Q psy7830         210 GAGTTE------VSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       210 ~~~~~~------l~~~l~~~LkpGG~Lvi~  233 (364)
                      ......      +.+...+.+|+||+++..
T Consensus       238 ~~~~p~~~t~~li~~~~l~~mk~g~~iV~v  267 (377)
T 2vhw_A          238 AVLVPGAKAPKLVSNSLVAHMKPGAVLVDI  267 (377)
T ss_dssp             CCCCTTSCCCCCBCHHHHTTSCTTCEEEEG
T ss_pred             CCCcCCCCCcceecHHHHhcCCCCcEEEEE
Confidence            543332      246778889999987753

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=89.94  E-value=0.34  Score=52.39  Aligned_cols=71  Identities=14%  Similarity=0.053  Sum_probs=49.8

Q ss_pred             CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC------------C
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW------------G  197 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~------------~  197 (364)
                      ...+++|+.||.|.++..+.+.    .|.++|+++.+++.-+.|..          +..++.+|+..            .
T Consensus       539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p----------~~~~~~~DI~~l~~~~~~~di~~~  608 (1002)
T 3swr_A          539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNP----------GSTVFTEDCNILLKLVMAGETTNS  608 (1002)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCT----------TSEEECSCHHHHHHHHHHTCSBCT
T ss_pred             CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC----------CCccccccHHHHhhhccchhhhhh
Confidence            3458999999999999877554    57799999999988877752          34445555321            1


Q ss_pred             ----CCCCCCeeEEEEccChH
Q psy7830         198 ----HAEGGPYDVIFFGAGTT  214 (364)
Q Consensus       198 ----~~~~~~fD~Ii~~~~~~  214 (364)
                          .+..+.+|+|+...+|+
T Consensus       609 ~~~~lp~~~~vDll~GGpPCQ  629 (1002)
T 3swr_A          609 RGQRLPQKGDVEMLCGGPPCQ  629 (1002)
T ss_dssp             TCCBCCCTTTCSEEEECCCCT
T ss_pred             hhhhcccCCCeeEEEEcCCCc
Confidence                11234689999877764

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=89.80  E-value=0.79  Score=44.26  Aligned_cols=71  Identities=14%  Similarity=0.045  Sum_probs=46.5

Q ss_pred             CEEEEECCCccHHHHHHHcc-----------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCe
Q psy7830         136 SRVLDIGSGQGYMATAKEWL-----------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPY  204 (364)
Q Consensus       136 ~~VLDiGcGsG~~a~~la~~-----------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~f  204 (364)
                      -.|+|+|+|+|.++..+.+.           +++.||+|+...+.-++++..       ..+|.+.. +..+.+.   ..
T Consensus        82 ~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~-------~~~v~W~~-~l~~lp~---~~  150 (387)
T 1zkd_A           82 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG-------IRNIHWHD-SFEDVPE---GP  150 (387)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT-------CSSEEEES-SGGGSCC---SS
T ss_pred             cEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcC-------CCCeEEeC-ChhhcCC---CC
Confidence            47999999999998776531           799999999988765555533       12455442 2222221   23


Q ss_pred             eEEEEccChHHHH
Q psy7830         205 DVIFFGAGTTEVS  217 (364)
Q Consensus       205 D~Ii~~~~~~~l~  217 (364)
                      =+|++|-.+..++
T Consensus       151 ~~viANE~fDAlP  163 (387)
T 1zkd_A          151 AVILANEYFDVLP  163 (387)
T ss_dssp             EEEEEESSGGGSC
T ss_pred             eEEEeccccccCc
Confidence            4778887776654

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=89.55  E-value=0.21  Score=46.30  Aligned_cols=52  Identities=21%  Similarity=0.240  Sum_probs=39.6

Q ss_pred             CCEEEEEcCCCCCC--CCCCCeeEEEEccChH--------------------------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         185 KTLEFILKDARWGH--AEGGPYDVIFFGAGTT--------------------------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       185 ~~v~~~~~D~~~~~--~~~~~fD~Ii~~~~~~--------------------------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      .+++++++|+.+..  ..+++||+|++|.++.                          .++.++.++|||||.+++.+++
T Consensus        20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d   99 (297)
T 2zig_A           20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGD   99 (297)
T ss_dssp             -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence            47889999987632  2347899999987752                          1346788999999999998875

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=89.16  E-value=3.4  Score=32.41  Aligned_cols=88  Identities=16%  Similarity=0.077  Sum_probs=51.1

Q ss_pred             CCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC----CCCCCe
Q psy7830         135 GSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH----AEGGPY  204 (364)
Q Consensus       135 g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~----~~~~~f  204 (364)
                      +++|+=+|+|  ..+..+++.      +|+.+|.+++.++..++..           ++.++.+|.....    .....+
T Consensus         4 ~m~i~IiG~G--~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~-----------~~~~~~~d~~~~~~l~~~~~~~~   70 (140)
T 1lss_A            4 GMYIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-----------DALVINGDCTKIKTLEDAGIEDA   70 (140)
T ss_dssp             -CEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----------SSEEEESCTTSHHHHHHTTTTTC
T ss_pred             CCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc-----------CcEEEEcCCCCHHHHHHcCcccC
Confidence            5789988874  555444433      8999999998776554321           3445666654211    112468


Q ss_pred             eEEEEccChHH---HHHHHHhccCCCcEEEEEEcC
Q psy7830         205 DVIFFGAGTTE---VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       205 D~Ii~~~~~~~---l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      |+|+.......   ....+.+.+.++ .+++....
T Consensus        71 d~vi~~~~~~~~~~~~~~~~~~~~~~-~ii~~~~~  104 (140)
T 1lss_A           71 DMYIAVTGKEEVNLMSSLLAKSYGIN-KTIARISE  104 (140)
T ss_dssp             SEEEECCSCHHHHHHHHHHHHHTTCC-CEEEECSS
T ss_pred             CEEEEeeCCchHHHHHHHHHHHcCCC-EEEEEecC
Confidence            99988765443   233455556775 55544433

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=89.05  E-value=0.56  Score=44.37  Aligned_cols=90  Identities=18%  Similarity=0.128  Sum_probs=56.4

Q ss_pred             cCCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC-----CCCCCC
Q psy7830         131 HLQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA-----RWGHAE  200 (364)
Q Consensus       131 ~l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~-----~~~~~~  200 (364)
                      .+++|++||-+|+|. |.++..+++.    +|+++|.+++.++.+++         ++.+.+ +...+.     ... ..
T Consensus       183 ~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~---------lGa~~v-i~~~~~~~~~v~~~-~~  251 (359)
T 1h2b_A          183 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER---------LGADHV-VDARRDPVKQVMEL-TR  251 (359)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH---------TTCSEE-EETTSCHHHHHHHH-TT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH---------hCCCEE-EeccchHHHHHHHH-hC
Confidence            378999999999863 4445555543    89999999998888764         222211 111111     001 11


Q ss_pred             CCCeeEEEEccChHH--HHHHHHhccCCCcEEEEE
Q psy7830         201 GGPYDVIFFGAGTTE--VSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~~--l~~~l~~~LkpGG~Lvi~  233 (364)
                      ...+|+|+-......  ......+.  +||++++.
T Consensus       252 g~g~Dvvid~~G~~~~~~~~~~~~~--~~G~~v~~  284 (359)
T 1h2b_A          252 GRGVNVAMDFVGSQATVDYTPYLLG--RMGRLIIV  284 (359)
T ss_dssp             TCCEEEEEESSCCHHHHHHGGGGEE--EEEEEEEC
T ss_pred             CCCCcEEEECCCCchHHHHHHHhhc--CCCEEEEE
Confidence            236999998766654  56666666  89988763

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=88.65  E-value=0.36  Score=45.99  Aligned_cols=91  Identities=14%  Similarity=0.079  Sum_probs=54.1

Q ss_pred             CCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEc
Q psy7830         135 GSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFG  210 (364)
Q Consensus       135 g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~  210 (364)
                      +.+|+-+|+|. |..+..+++.   +|+++|.+++.++.+++....         .+.....+.......-..+|+|+..
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~DvVI~~  237 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS---------RVELLYSNSAEIETAVAEADLLIGA  237 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG---------GSEEEECCHHHHHHHHHTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCc---------eeEeeeCCHHHHHHHHcCCCEEEEC
Confidence            48999999853 2333333333   899999999988887765422         2222221111110001258999876


Q ss_pred             cChHH------HHHHHHhccCCCcEEEEEE
Q psy7830         211 AGTTE------VSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       211 ~~~~~------l~~~l~~~LkpGG~Lvi~~  234 (364)
                      .....      +.+...+.+++||+++...
T Consensus       238 ~~~~~~~~~~li~~~~~~~~~~g~~ivdv~  267 (361)
T 1pjc_A          238 VLVPGRRAPILVPASLVEQMRTGSVIVDVA  267 (361)
T ss_dssp             CCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             CCcCCCCCCeecCHHHHhhCCCCCEEEEEe
Confidence            54433      2456778899999877543

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=88.64  E-value=1.4  Score=39.42  Aligned_cols=96  Identities=15%  Similarity=0.139  Sum_probs=64.0

Q ss_pred             CCCEEEEECCCc--cH---HHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--------
Q psy7830         134 NGSRVLDIGSGQ--GY---MATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH--------  198 (364)
Q Consensus       134 ~g~~VLDiGcGs--G~---~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~--------  198 (364)
                      .|+.+|--|+++  |+   .+..+++.  +|+.++.+++.++.+.+.+++     .+..++.++.+|+.+..        
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~-----~~~~~~~~~~~Dv~~~~~v~~~~~~   79 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQ-----LNQPEAHLYQIDVQSDEEVINGFEQ   79 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGG-----GTCSSCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-----cCCCcEEEEEccCCCHHHHHHHHHH
Confidence            578899989643  42   23444444  999999999888888877766     33357888999986421        


Q ss_pred             --CCCCCeeEEEEccChH---------------H--------------HHHHHHhccCCCcEEEEEE
Q psy7830         199 --AEGGPYDVIFFGAGTT---------------E--------------VSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       199 --~~~~~fD~Ii~~~~~~---------------~--------------l~~~l~~~LkpGG~Lvi~~  234 (364)
                        ...+..|+++.|....               .              +.......++.+|.+|...
T Consensus        80 ~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnis  146 (256)
T 4fs3_A           80 IGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATT  146 (256)
T ss_dssp             HHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEE
T ss_pred             HHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEe
Confidence              1125789988775420               0              1234556778899887655

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=88.43  E-value=2.8  Score=33.37  Aligned_cols=88  Identities=9%  Similarity=-0.001  Sum_probs=54.3

Q ss_pred             CCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC----CCCCCe
Q psy7830         135 GSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH----AEGGPY  204 (364)
Q Consensus       135 g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~----~~~~~f  204 (364)
                      .++|+-+|||  .++..+++.      +|+++|.+++.++.+++.            .+.++.+|..+..    .....+
T Consensus         6 ~~~v~I~G~G--~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~------------~~~~~~gd~~~~~~l~~~~~~~~   71 (141)
T 3llv_A            6 RYEYIVIGSE--AAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE------------GFDAVIADPTDESFYRSLDLEGV   71 (141)
T ss_dssp             CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT------------TCEEEECCTTCHHHHHHSCCTTC
T ss_pred             CCEEEEECCC--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC------------CCcEEECCCCCHHHHHhCCcccC
Confidence            4579999985  455554443      899999999887766541            4567788876421    012468


Q ss_pred             eEEEEccChHH---HHHHHHhccCCCcEEEEEEcCC
Q psy7830         205 DVIFFGAGTTE---VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       205 D~Ii~~~~~~~---l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      |.|++...-..   ......+.+. ...++....+.
T Consensus        72 d~vi~~~~~~~~n~~~~~~a~~~~-~~~iia~~~~~  106 (141)
T 3llv_A           72 SAVLITGSDDEFNLKILKALRSVS-DVYAIVRVSSP  106 (141)
T ss_dssp             SEEEECCSCHHHHHHHHHHHHHHC-CCCEEEEESCG
T ss_pred             CEEEEecCCHHHHHHHHHHHHHhC-CceEEEEEcCh
Confidence            99887665332   2233444455 56666655443

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=88.29  E-value=12  Score=34.59  Aligned_cols=98  Identities=11%  Similarity=0.028  Sum_probs=67.8

Q ss_pred             CEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHh-cCCCCCCCCCEEEEEcCCCCCCCC--------CCC
Q psy7830         136 SRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKI-SRPDLLQSKTLEFILKDARWGHAE--------GGP  203 (364)
Q Consensus       136 ~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~-~~~~~l~~~~v~~~~~D~~~~~~~--------~~~  203 (364)
                      ..|+++|||-=.....+...   +++=+| .|..++..++.+.. +.   ....+..++.+|+.+.+..        ...
T Consensus       104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~---~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~  179 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGV---TPTADRREVPIDLRQDWPPALRSAGFDPSA  179 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTC---CCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred             CeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCC---CCCCCeEEEecchHhhHHHHHHhccCCCCC
Confidence            57999999988887777622   788888 69999998888865 11   1235788999998752211        112


Q ss_pred             eeEEEEccChH--------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         204 YDVIFFGAGTT--------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       204 fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      -=++++-+.+.        .++..+.+.+.||+.|++.....
T Consensus       180 Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~  221 (310)
T 2uyo_A          180 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPL  221 (310)
T ss_dssp             CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred             CEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence            23455555553        35677778888999999887654

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=88.02  E-value=1.4  Score=39.45  Aligned_cols=91  Identities=15%  Similarity=0.187  Sum_probs=60.5

Q ss_pred             CCCEEEEECCCccHHHHHHHc----c--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC--------
Q psy7830         134 NGSRVLDIGSGQGYMATAKEW----L--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA--------  199 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~----~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~--------  199 (364)
                      .|+++|-.|++.| ++..+++    .  +|+.++.+++.++...+.+.         .++.++.+|+.+...        
T Consensus         7 ~gk~~lVTGas~g-IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~   76 (255)
T 4eso_A            7 QGKKAIVIGGTHG-MGLATVRRLVEGGAEVLLTGRNESNIARIREEFG---------PRVHALRSDIADLNEIAVLGAAA   76 (255)
T ss_dssp             TTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG---------GGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC---------CcceEEEccCCCHHHHHHHHHHH
Confidence            5778998887655 4444333    3  99999999988777666542         278889999865321        


Q ss_pred             --CCCCeeEEEEccChH-----------H--------------HHHHHHhccCCCcEEEEEE
Q psy7830         200 --EGGPYDVIFFGAGTT-----------E--------------VSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       200 --~~~~fD~Ii~~~~~~-----------~--------------l~~~l~~~LkpGG~Lvi~~  234 (364)
                        ..+..|+++.|....           .              +.+.+...++.+|+++...
T Consensus        77 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is  138 (255)
T 4eso_A           77 GQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS  138 (255)
T ss_dssp             HHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence              114789998875431           0              3356667777788877644

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=87.73  E-value=0.67  Score=45.00  Aligned_cols=41  Identities=12%  Similarity=-0.019  Sum_probs=34.6

Q ss_pred             CEEEEECCCccHHHHHHHcc-----e----EEEEeCCHHHHHHHHHHHHh
Q psy7830         136 SRVLDIGSGQGYMATAKEWL-----S----SVRQLLLPETLNNSLKNIKI  176 (364)
Q Consensus       136 ~~VLDiGcGsG~~a~~la~~-----~----V~~vDis~~~l~~a~~~~~~  176 (364)
                      .+|+|+.||.|.++..+.+.     .    |.++|+++.+++.-+.|...
T Consensus        11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~   60 (403)
T 4dkj_A           11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK   60 (403)
T ss_dssp             EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred             ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence            58999999999999887665     3    88899999999988888743

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=87.61  E-value=1.9  Score=40.39  Aligned_cols=89  Identities=8%  Similarity=-0.009  Sum_probs=53.2

Q ss_pred             CCC-CEEEEE-CCC-ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC---C---C
Q psy7830         133 QNG-SRVLDI-GSG-QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH---A---E  200 (364)
Q Consensus       133 ~~g-~~VLDi-GcG-sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~---~---~  200 (364)
                      +++ .+||-. |+| .|..+..+++.   +|++++.+++.++.+++.         +.+.  ++..+..+..   .   .
T Consensus       162 ~~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~---------Ga~~--~~~~~~~~~~~~v~~~~~  230 (349)
T 3pi7_A          162 QEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDI---------GAAH--VLNEKAPDFEATLREVMK  230 (349)
T ss_dssp             HHCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHH---------TCSE--EEETTSTTHHHHHHHHHH
T ss_pred             hCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc---------CCCE--EEECCcHHHHHHHHHHhc
Confidence            445 566644 333 24445555555   999999999988887642         1111  1211111110   0   0


Q ss_pred             CCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         201 GGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ...+|+|+-+.....+ ....+.|++||++++.
T Consensus       231 ~~g~D~vid~~g~~~~-~~~~~~l~~~G~iv~~  262 (349)
T 3pi7_A          231 AEQPRIFLDAVTGPLA-SAIFNAMPKRARWIIY  262 (349)
T ss_dssp             HHCCCEEEESSCHHHH-HHHHHHSCTTCEEEEC
T ss_pred             CCCCcEEEECCCChhH-HHHHhhhcCCCEEEEE
Confidence            1369999977665554 7788999999998864

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=86.08  E-value=0.99  Score=47.47  Aligned_cols=41  Identities=22%  Similarity=0.076  Sum_probs=33.6

Q ss_pred             CCCEEEEECCCccHHHHHHHc--------c-eEEEEeCCHHHHHHHHHHH
Q psy7830         134 NGSRVLDIGSGQGYMATAKEW--------L-SSVRQLLLPETLNNSLKNI  174 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~--------~-~V~~vDis~~~l~~a~~~~  174 (364)
                      ...+|||+-||.|+++.-+.+        . .+.++|+++.+++.-+.|.
T Consensus       211 k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh  260 (784)
T 4ft4_B          211 RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH  260 (784)
T ss_dssp             EEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred             CCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence            446899999999999866543        2 6789999999999888875

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=86.06  E-value=0.57  Score=46.74  Aligned_cols=85  Identities=14%  Similarity=0.124  Sum_probs=54.6

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEE
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVI  207 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~I  207 (364)
                      ..+|++|+-+|+|. |......++.   +|+++|.++...+.+++         .+   +++  .+..+.   -...|+|
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~---------~G---a~~--~~l~e~---l~~aDvV  333 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMM---------EG---FDV--VTVEEA---IGDADIV  333 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH---------TT---CEE--CCHHHH---GGGCSEE
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---------cC---CEE--ecHHHH---HhCCCEE
Confidence            56899999999865 3333333332   89999999987766643         11   222  122111   1357999


Q ss_pred             EEccChHHHHH-HHHhccCCCcEEEEE
Q psy7830         208 FFGAGTTEVSK-TILSQLKPNGRIVAP  233 (364)
Q Consensus       208 i~~~~~~~l~~-~l~~~LkpGG~Lvi~  233 (364)
                      +......+++. ...+.+|+||+++..
T Consensus       334 i~atgt~~~i~~~~l~~mk~ggilvnv  360 (494)
T 3ce6_A          334 VTATGNKDIIMLEHIKAMKDHAILGNI  360 (494)
T ss_dssp             EECSSSSCSBCHHHHHHSCTTCEEEEC
T ss_pred             EECCCCHHHHHHHHHHhcCCCcEEEEe
Confidence            88765555443 677889999988753

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=86.04  E-value=0.76  Score=44.99  Aligned_cols=42  Identities=19%  Similarity=0.163  Sum_probs=34.9

Q ss_pred             CCEEEEECCCccHHHHHHHcc---------eEEEEeCCHHHHHHHHHHHHh
Q psy7830         135 GSRVLDIGSGQGYMATAKEWL---------SSVRQLLLPETLNNSLKNIKI  176 (364)
Q Consensus       135 g~~VLDiGcGsG~~a~~la~~---------~V~~vDis~~~l~~a~~~~~~  176 (364)
                      .-+|+|+|+|+|.++..+.+.         +++.||+|+.+.+.-++++..
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            468999999999998777543         699999999988887777754

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=85.51  E-value=6.6  Score=36.84  Aligned_cols=97  Identities=12%  Similarity=0.080  Sum_probs=61.4

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcC------C----------CCCCCCCEEEEEc
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISR------P----------DLLQSKTLEFILK  192 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~------~----------~~l~~~~v~~~~~  192 (364)
                      .+...|+.+|||.......+...    +++-+|. |++++.-++.+....      +          ..+..++.+++.+
T Consensus        96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~  174 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC  174 (334)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred             CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence            45678999999999998887753    5555555 888777776665510      0          0001257899999


Q ss_pred             CCCCC-C--------CCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEE
Q psy7830         193 DARWG-H--------AEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIV  231 (364)
Q Consensus       193 D~~~~-~--------~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lv  231 (364)
                      |+.+. +        .......++++-+++..        ++..+.+.. |+|.++
T Consensus       175 DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v  229 (334)
T 1rjd_A          175 DLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWI  229 (334)
T ss_dssp             CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEE
T ss_pred             CCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEE
Confidence            98762 1        01234567777776643        445555555 677665

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=84.92  E-value=3.5  Score=39.93  Aligned_cols=91  Identities=19%  Similarity=0.188  Sum_probs=60.5

Q ss_pred             CCCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC----CCCCC
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH----AEGGP  203 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~----~~~~~  203 (364)
                      .+++|+-+|+|.  ++..+++.      .|+++|.+++.++.+++.            .+.++.+|+.+..    ..-..
T Consensus         3 ~~~~viIiG~Gr--~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~------------g~~vi~GDat~~~~L~~agi~~   68 (413)
T 3l9w_A            3 HGMRVIIAGFGR--FGQITGRLLLSSGVKMVVLDHDPDHIETLRKF------------GMKVFYGDATRMDLLESAGAAK   68 (413)
T ss_dssp             -CCSEEEECCSH--HHHHHHHHHHHTTCCEEEEECCHHHHHHHHHT------------TCCCEESCTTCHHHHHHTTTTT
T ss_pred             CCCeEEEECCCH--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHhC------------CCeEEEcCCCCHHHHHhcCCCc
Confidence            345788888754  55444443      899999999999887641            3557889986531    11246


Q ss_pred             eeEEEEccChHH---HHHHHHhccCCCcEEEEEEcCCC
Q psy7830         204 YDVIFFGAGTTE---VSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       204 fD~Ii~~~~~~~---l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      +|+|++...-..   ..-...+.+.|+..+++...+..
T Consensus        69 A~~viv~~~~~~~n~~i~~~ar~~~p~~~Iiara~~~~  106 (413)
T 3l9w_A           69 AEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVD  106 (413)
T ss_dssp             CSEEEECCSSHHHHHHHHHHHHHHCTTCEEEEEESSHH
T ss_pred             cCEEEECCCChHHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence            898887655433   33456677788888888776543

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=84.70  E-value=5.2  Score=32.38  Aligned_cols=92  Identities=10%  Similarity=0.043  Sum_probs=56.7

Q ss_pred             CCEEEEECCCccHHHHHHHcc------eEEEEeCC-HHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC----CCCCC
Q psy7830         135 GSRVLDIGSGQGYMATAKEWL------SSVRQLLL-PETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH----AEGGP  203 (364)
Q Consensus       135 g~~VLDiGcGsG~~a~~la~~------~V~~vDis-~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~----~~~~~  203 (364)
                      ..+|+=+|+  |..+..+++.      .|+.+|.+ ++.++...+...         ..+.++.+|..+..    ..-..
T Consensus         3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~---------~~~~~i~gd~~~~~~l~~a~i~~   71 (153)
T 1id1_A            3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG---------DNADVIPGDSNDSSVLKKAGIDR   71 (153)
T ss_dssp             CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC---------TTCEEEESCTTSHHHHHHHTTTT
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc---------CCCeEEEcCCCCHHHHHHcChhh
Confidence            346787776  5666555543      89999997 455544443321         25778899976421    11246


Q ss_pred             eeEEEEccChHH---HHHHHHhccCCCcEEEEEEcCC
Q psy7830         204 YDVIFFGAGTTE---VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       204 fD~Ii~~~~~~~---l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +|.|++...-..   ......+.+.|...++....+.
T Consensus        72 ad~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~~  108 (153)
T 1id1_A           72 CRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDS  108 (153)
T ss_dssp             CSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSG
T ss_pred             CCEEEEecCChHHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            898887655433   3345566667777777766554

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=84.59  E-value=0.57  Score=44.09  Aligned_cols=88  Identities=16%  Similarity=0.067  Sum_probs=50.8

Q ss_pred             CCCCCEEEEECCC--ccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC--CCC--CCC
Q psy7830         132 LQNGSRVLDIGSG--QGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR--WGH--AEG  201 (364)
Q Consensus       132 l~~g~~VLDiGcG--sG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~--~~~--~~~  201 (364)
                      +++|++||-.|++  .|..+..+++.    +|++++ ++...+.++  +..        +.  ++..+..  +..  ...
T Consensus       140 ~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~--~ga--------~~--~~~~~~~~~~~~~~~~~  206 (349)
T 4a27_A          140 LREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK--DSV--------TH--LFDRNADYVQEVKRISA  206 (349)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG--GGS--------SE--EEETTSCHHHHHHHHCT
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH--cCC--------cE--EEcCCccHHHHHHHhcC
Confidence            6899999999983  36677777765    788887 555444443  211        11  1111110  000  012


Q ss_pred             CCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +.+|+|+-...-..+ ....+.|++||++++.
T Consensus       207 ~g~Dvv~d~~g~~~~-~~~~~~l~~~G~~v~~  237 (349)
T 4a27_A          207 EGVDIVLDCLCGDNT-GKGLSLLKPLGTYILY  237 (349)
T ss_dssp             TCEEEEEEECC--------CTTEEEEEEEEEE
T ss_pred             CCceEEEECCCchhH-HHHHHHhhcCCEEEEE
Confidence            479999876554444 7788999999999864

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=84.27  E-value=3.4  Score=36.70  Aligned_cols=74  Identities=23%  Similarity=0.223  Sum_probs=51.2

Q ss_pred             CCCEEEEECC-CccH---HHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC--------
Q psy7830         134 NGSRVLDIGS-GQGY---MATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA--------  199 (364)
Q Consensus       134 ~g~~VLDiGc-GsG~---~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~--------  199 (364)
                      .+++||-.|+ |+|.   ++..+++.  +|+.++.++..++...+.+..     .+..++.++.+|+.+...        
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~~Dl~~~~~v~~~~~~~   95 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLAD-----LGLGRVEAVVCDVTSTEAVDALITQT   95 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT-----TCSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHh-----cCCCceEEEEeCCCCHHHHHHHHHHH
Confidence            4778998887 5654   23344444  999999999988887777755     223579999999875310        


Q ss_pred             --CCCCeeEEEEccC
Q psy7830         200 --EGGPYDVIFFGAG  212 (364)
Q Consensus       200 --~~~~fD~Ii~~~~  212 (364)
                        ..++.|+++.|..
T Consensus        96 ~~~~g~id~li~~Ag  110 (266)
T 3o38_A           96 VEKAGRLDVLVNNAG  110 (266)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCCcEEEECCC
Confidence              1146899988765

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=84.19  E-value=4  Score=36.26  Aligned_cols=97  Identities=12%  Similarity=0.040  Sum_probs=62.1

Q ss_pred             CCCEEEEECCC--ccH---HHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC-------
Q psy7830         134 NGSRVLDIGSG--QGY---MATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA-------  199 (364)
Q Consensus       134 ~g~~VLDiGcG--sG~---~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~-------  199 (364)
                      .+.++|-.|++  +|.   ++..+++.  +|+.++.++...+.+.+....     .+..++.++.+|+.+...       
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~~D~~~~~~v~~~~~~   80 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGT-----LDRNDSIILPCDVTNDAEIETCFAS   80 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHT-----SSSCCCEEEECCCSSSHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHh-----cCCCCceEEeCCCCCHHHHHHHHHH
Confidence            47789999976  443   23344444  999999987766666555544     222478899999875321       


Q ss_pred             ---CCCCeeEEEEccChH-----------------------------HHHHHHHhccCCCcEEEEEEc
Q psy7830         200 ---EGGPYDVIFFGAGTT-----------------------------EVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       200 ---~~~~fD~Ii~~~~~~-----------------------------~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                         ..+..|+++.+....                             .+.+.+...++++|+++....
T Consensus        81 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  148 (266)
T 3oig_A           81 IKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY  148 (266)
T ss_dssp             HHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             HHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence               013689888765421                             034567778888898877553

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=83.93  E-value=3.7  Score=34.32  Aligned_cols=88  Identities=17%  Similarity=0.125  Sum_probs=52.9

Q ss_pred             CCEEEEECCCccHHHHHHHc------c-eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC---CC--CCC
Q psy7830         135 GSRVLDIGSGQGYMATAKEW------L-SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG---HA--EGG  202 (364)
Q Consensus       135 g~~VLDiGcGsG~~a~~la~------~-~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~---~~--~~~  202 (364)
                      +++|+-+|||.  .+..+++      - .|+++|.+++.++.+++.            .+.++.+|..+.   ..  ...
T Consensus        39 ~~~v~IiG~G~--~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~------------g~~~~~gd~~~~~~l~~~~~~~  104 (183)
T 3c85_A           39 HAQVLILGMGR--IGTGAYDELRARYGKISLGIEIREEAAQQHRSE------------GRNVISGDATDPDFWERILDTG  104 (183)
T ss_dssp             TCSEEEECCSH--HHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHT------------TCCEEECCTTCHHHHHTBCSCC
T ss_pred             CCcEEEECCCH--HHHHHHHHHHhccCCeEEEEECCHHHHHHHHHC------------CCCEEEcCCCCHHHHHhccCCC
Confidence            56899998764  3333322      2 799999999887765431            344566776431   11  124


Q ss_pred             CeeEEEEccChHHH---HHHHHhccCCCcEEEEEEcC
Q psy7830         203 PYDVIFFGAGTTEV---SKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       203 ~fD~Ii~~~~~~~l---~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      .+|+|++...-...   .-...+.+.|++.++.....
T Consensus       105 ~ad~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~  141 (183)
T 3c85_A          105 HVKLVLLAMPHHQGNQTALEQLQRRNYKGQIAAIAEY  141 (183)
T ss_dssp             CCCEEEECCSSHHHHHHHHHHHHHTTCCSEEEEEESS
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHHCCCCEEEEEECC
Confidence            68999875543322   22345566777788776544

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=83.69  E-value=0.75  Score=43.09  Aligned_cols=53  Identities=15%  Similarity=0.181  Sum_probs=40.6

Q ss_pred             CCEEEEEcCCCCCC--CCCCCeeEEEEccCh--------------------HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         185 KTLEFILKDARWGH--AEGGPYDVIFFGAGT--------------------TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       185 ~~v~~~~~D~~~~~--~~~~~fD~Ii~~~~~--------------------~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      .+..++++|+....  ..+++||+|+++.++                    ...+.++.++|+|||.+++.+.+.
T Consensus        13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~   87 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA   87 (323)
T ss_dssp             SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence            46889999986532  235689999998765                    124578899999999999988764

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=83.67  E-value=1.8  Score=48.28  Aligned_cols=71  Identities=14%  Similarity=0.048  Sum_probs=49.8

Q ss_pred             CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC------------CC
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR------------WG  197 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~------------~~  197 (364)
                      ...+++|+.||.|+++..+...    .+.++|+++.+++.-+.|..          +..++.+|+.            ..
T Consensus       850 ~~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~p----------~~~~~~~DI~~l~~~~~~gdi~~~  919 (1330)
T 3av4_A          850 PKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNP----------GTTVFTEDCNVLLKLVMAGEVTNS  919 (1330)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHCT----------TSEEECSCHHHHHHHHTTTCSBCS
T ss_pred             CCceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC----------CCcEeeccHHHHhHhhhccchhhh
Confidence            4568999999999999887665    47899999999988877752          3334444432            11


Q ss_pred             ----CCCCCCeeEEEEccChH
Q psy7830         198 ----HAEGGPYDVIFFGAGTT  214 (364)
Q Consensus       198 ----~~~~~~fD~Ii~~~~~~  214 (364)
                          .+..+.+|+|+...+|+
T Consensus       920 ~~~~lp~~~~vDvl~GGpPCQ  940 (1330)
T 3av4_A          920 LGQRLPQKGDVEMLCGGPPCQ  940 (1330)
T ss_dssp             SCCBCCCTTTCSEEEECCCCT
T ss_pred             hhhhccccCccceEEecCCCc
Confidence                11124689999887764

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=83.36  E-value=3.5  Score=31.20  Aligned_cols=83  Identities=12%  Similarity=-0.060  Sum_probs=49.7

Q ss_pred             CCCEEEEECCCccHHHHHHHcc-------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC---CCCCC
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL-------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH---AEGGP  203 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~-------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~---~~~~~  203 (364)
                      .+++|+-+|+  |..+..+++.       +|+++|.++..++...    .        ..+.+...|..+..   ..-..
T Consensus         4 ~~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~--------~~~~~~~~d~~~~~~~~~~~~~   69 (118)
T 3ic5_A            4 MRWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R--------MGVATKQVDAKDEAGLAKALGG   69 (118)
T ss_dssp             TCEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T--------TTCEEEECCTTCHHHHHHHTTT
T ss_pred             CcCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h--------CCCcEEEecCCCHHHHHHHHcC
Confidence            4568999998  5565554433       7999999988766554    1        24566777765321   01136


Q ss_pred             eeEEEEccChHHHHHHHHhccCCCcEE
Q psy7830         204 YDVIFFGAGTTEVSKTILSQLKPNGRI  230 (364)
Q Consensus       204 fD~Ii~~~~~~~l~~~l~~~LkpGG~L  230 (364)
                      +|+|+...+.......+...++.|...
T Consensus        70 ~d~vi~~~~~~~~~~~~~~~~~~g~~~   96 (118)
T 3ic5_A           70 FDAVISAAPFFLTPIIAKAAKAAGAHY   96 (118)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHTTCEE
T ss_pred             CCEEEECCCchhhHHHHHHHHHhCCCE
Confidence            899998776554333333333444433

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=83.19  E-value=7.3  Score=35.36  Aligned_cols=95  Identities=15%  Similarity=0.041  Sum_probs=60.8

Q ss_pred             CCCCEEEEECCCcc-HHH----HHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC-------
Q psy7830         133 QNGSRVLDIGSGQG-YMA----TAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH-------  198 (364)
Q Consensus       133 ~~g~~VLDiGcGsG-~~a----~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~-------  198 (364)
                      -.++++|-.|+++| .++    ..+++.  +|+.++.++...+.+++.....       .++.++.+|+.+..       
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~Dv~d~~~v~~~~~  101 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEEL-------GAFVAGHCDVADAASIDAVFE  101 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHH-------TCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc-------CCceEEECCCCCHHHHHHHHH
Confidence            35788999997743 233    334444  8999999976655555544432       26888999986531       


Q ss_pred             ---CCCCCeeEEEEccChH---------------H--------------HHHHHHhccCCCcEEEEEE
Q psy7830         199 ---AEGGPYDVIFFGAGTT---------------E--------------VSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       199 ---~~~~~fD~Ii~~~~~~---------------~--------------l~~~l~~~LkpGG~Lvi~~  234 (364)
                         ...+..|+++.|....               .              +.+.+.+.++.+|++|...
T Consensus       102 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~is  169 (293)
T 3grk_A          102 TLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLT  169 (293)
T ss_dssp             HHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             HHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence               0124789998876421               0              3356667777888887755

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=83.09  E-value=2.2  Score=38.97  Aligned_cols=92  Identities=21%  Similarity=0.128  Sum_probs=61.4

Q ss_pred             CCCEEEEECCCccHH---HHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC----------
Q psy7830         134 NGSRVLDIGSGQGYM---ATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH----------  198 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~---a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~----------  198 (364)
                      .|+.+|--|+++|.-   +..+++.  +|+.+|.+++.++.+.+.+.         .++..+.+|+.+..          
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g---------~~~~~~~~Dv~~~~~v~~~~~~~~   98 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIG---------GGAVGIQADSANLAELDRLYEKVK   98 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---------TTCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC---------CCeEEEEecCCCHHHHHHHHHHHH
Confidence            578888888877642   2333333  99999999998887765542         25677888876431          


Q ss_pred             CCCCCeeEEEEccChHH-------------------------HHHHHHhccCCCcEEEEEE
Q psy7830         199 AEGGPYDVIFFGAGTTE-------------------------VSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       199 ~~~~~fD~Ii~~~~~~~-------------------------l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ...++.|+++.|.....                         +.+.+.+.++.+|.+|...
T Consensus        99 ~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInis  159 (273)
T 4fgs_A           99 AEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTG  159 (273)
T ss_dssp             HHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred             HHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence            11257899988764310                         3367777888888876643

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=82.94  E-value=2  Score=34.58  Aligned_cols=92  Identities=14%  Similarity=0.112  Sum_probs=51.1

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc-CC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK-DA  194 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~-D~  194 (364)
                      ...++.+.  ...+++|+-+|||  ..+..++..      +|+.+|.+++..+...+.+           .+.+... +.
T Consensus        10 ~~a~~~~~--~~~~~~v~iiG~G--~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~-----------~~~~~~~~~~   74 (144)
T 3oj0_A           10 SIVYDIVR--KNGGNKILLVGNG--MLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKY-----------EYEYVLINDI   74 (144)
T ss_dssp             HHHHHHHH--HHCCCEEEEECCS--HHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHH-----------TCEEEECSCH
T ss_pred             HHHHHHHH--hccCCEEEEECCC--HHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHh-----------CCceEeecCH
Confidence            33444444  2358899999985  555555443      7899999988766544333           1222221 21


Q ss_pred             CCCCCCCCCeeEEEEccChHHHHHHHHhccCCCcEEEE
Q psy7830         195 RWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       195 ~~~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi  232 (364)
                      .+.   -..+|+|+...+..+..- -...+++|+.++-
T Consensus        75 ~~~---~~~~Divi~at~~~~~~~-~~~~l~~g~~vid  108 (144)
T 3oj0_A           75 DSL---IKNNDVIITATSSKTPIV-EERSLMPGKLFID  108 (144)
T ss_dssp             HHH---HHTCSEEEECSCCSSCSB-CGGGCCTTCEEEE
T ss_pred             HHH---hcCCCEEEEeCCCCCcEe-eHHHcCCCCEEEE
Confidence            111   135799987665543111 1256788766543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=82.41  E-value=5.2  Score=34.50  Aligned_cols=89  Identities=19%  Similarity=0.070  Sum_probs=56.1

Q ss_pred             CEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC----CCCCCee
Q psy7830         136 SRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH----AEGGPYD  205 (364)
Q Consensus       136 ~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~----~~~~~fD  205 (364)
                      ++|+=+|+  |..+..+++.      .|+.+|.+++.++...+..           ++.++.+|..+..    ..-..+|
T Consensus         1 M~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~-----------~~~~i~gd~~~~~~l~~a~i~~ad   67 (218)
T 3l4b_C            1 MKVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL-----------KATIIHGDGSHKEILRDAEVSKND   67 (218)
T ss_dssp             CCEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS-----------SSEEEESCTTSHHHHHHHTCCTTC
T ss_pred             CEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc-----------CCeEEEcCCCCHHHHHhcCcccCC
Confidence            45777776  5666555544      8999999999887654331           4667889876421    0124689


Q ss_pred             EEEEccChHH---HHHHHHhccCCCcEEEEEEcCC
Q psy7830         206 VIFFGAGTTE---VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       206 ~Ii~~~~~~~---l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +|++...-..   +.....+.+.+...++..+.+.
T Consensus        68 ~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~~~~~  102 (218)
T 3l4b_C           68 VVVILTPRDEVNLFIAQLVMKDFGVKRVVSLVNDP  102 (218)
T ss_dssp             EEEECCSCHHHHHHHHHHHHHTSCCCEEEECCCSG
T ss_pred             EEEEecCCcHHHHHHHHHHHHHcCCCeEEEEEeCc
Confidence            9887665443   3344555566677776655443

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=81.19  E-value=0.63  Score=39.05  Aligned_cols=99  Identities=18%  Similarity=0.176  Sum_probs=59.0

Q ss_pred             HHHHHHhccC-CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830         123 RCLEQLVDHL-QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG  197 (364)
Q Consensus       123 ~~l~~L~~~l-~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~  197 (364)
                      .++++....+ ....-|||+|-|+|..=-++...    .|+++|..-..-.       .     .-.+.-.++.+|+.+.
T Consensus        28 ~~L~~a~~~v~~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp-------~-----~~P~~e~~ilGdi~~t   95 (174)
T 3iht_A           28 ACLEHAIAQTAGLSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHP-------D-----STPPEAQLILGDIRET   95 (174)
T ss_dssp             HHHHHHHHHTTTCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCG-------G-----GCCCGGGEEESCHHHH
T ss_pred             HHHHHHHHHhcCCCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCC-------C-----CCCchHheecccHHHH
Confidence            3555554333 23457999999999888777766    8999986311100       0     1112334566666543


Q ss_pred             CCC-----CCCeeEEEEccCh----------HHHHHHHHhccCCCcEEEEE
Q psy7830         198 HAE-----GGPYDVIFFGAGT----------TEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       198 ~~~-----~~~fD~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      .+.     ..+.-+++++...          .++.+.+..+|.|||++|-.
T Consensus        96 L~~~~~r~g~~a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~  146 (174)
T 3iht_A           96 LPATLERFGATASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSS  146 (174)
T ss_dssp             HHHHHHHHCSCEEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred             HHHHHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence            221     2334445554332          35778899999999998843

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=81.04  E-value=5.5  Score=35.67  Aligned_cols=94  Identities=18%  Similarity=0.155  Sum_probs=60.9

Q ss_pred             CCCEEEEECCCccHHHHHHH----cc--eEEEEeCC------------HHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC
Q psy7830         134 NGSRVLDIGSGQGYMATAKE----WL--SSVRQLLL------------PETLNNSLKNIKISRPDLLQSKTLEFILKDAR  195 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la----~~--~V~~vDis------------~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~  195 (364)
                      .+++||-.|++.| ++..++    +.  +|+.+|.+            ...++.+...+...      ..++.++.+|+.
T Consensus         9 ~gk~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~D~~   81 (287)
T 3pxx_A            9 QDKVVLVTGGARG-QGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKT------GRKAYTAEVDVR   81 (287)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT------TSCEEEEECCTT
T ss_pred             CCCEEEEeCCCCh-HHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhc------CCceEEEEccCC
Confidence            4678998887655 443333    33  89999987            66666666655541      147889999986


Q ss_pred             CCCC----------CCCCeeEEEEccCh---------HH--------------HHHHHHhccCCCcEEEEEE
Q psy7830         196 WGHA----------EGGPYDVIFFGAGT---------TE--------------VSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       196 ~~~~----------~~~~fD~Ii~~~~~---------~~--------------l~~~l~~~LkpGG~Lvi~~  234 (364)
                      +...          ..+..|+++.|...         +.              +.+.+...++.+|.++...
T Consensus        82 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  153 (287)
T 3pxx_A           82 DRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG  153 (287)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence            5311          11368999887543         11              3456777778888877644

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=80.28  E-value=8.9  Score=33.47  Aligned_cols=71  Identities=17%  Similarity=0.186  Sum_probs=47.9

Q ss_pred             CCCCEEEEECCCccHHHHHHHc----c--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC------CC
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEW----L--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH------AE  200 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~----~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~------~~  200 (364)
                      .++.+||-.|++.| ++..+++    .  +|+.++.++..++...+.+.         .++.+..+|..+..      ..
T Consensus        12 ~~~k~vlVTGas~g-IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~~~~~~~~   81 (249)
T 3f9i_A           12 LTGKTSLITGASSG-IGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK---------DNYTIEVCNLANKEECSNLISK   81 (249)
T ss_dssp             CTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---------SSEEEEECCTTSHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc---------cCccEEEcCCCCHHHHHHHHHh
Confidence            46788998887654 4444443    3  89999999988777665542         37888888876421      11


Q ss_pred             CCCeeEEEEccCh
Q psy7830         201 GGPYDVIFFGAGT  213 (364)
Q Consensus       201 ~~~fD~Ii~~~~~  213 (364)
                      .+..|+++.+...
T Consensus        82 ~~~id~li~~Ag~   94 (249)
T 3f9i_A           82 TSNLDILVCNAGI   94 (249)
T ss_dssp             CSCCSEEEECCC-
T ss_pred             cCCCCEEEECCCC
Confidence            2468999887653

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=80.06  E-value=5  Score=35.28  Aligned_cols=72  Identities=17%  Similarity=0.040  Sum_probs=47.1

Q ss_pred             CCCEEEEECCCccHHHHHH----Hc-c--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC-------
Q psy7830         134 NGSRVLDIGSGQGYMATAK----EW-L--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA-------  199 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~l----a~-~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~-------  199 (364)
                      .+++||-.|+ +|.++..+    ++ .  +|+.++.++...+...+.+...     + .++.++.+|+.+...       
T Consensus         3 ~~k~vlITGa-sggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~-----~-~~~~~~~~Dl~~~~~~~~~~~~   75 (276)
T 1wma_A            3 GIHVALVTGG-NKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE-----G-LSPRFHQLDIDDLQSIRALRDF   75 (276)
T ss_dssp             CCCEEEESSC-SSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT-----T-CCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhc-----C-CeeEEEECCCCCHHHHHHHHHH
Confidence            4667887775 45555444    44 4  8999999988777766666541     1 368889999865310       


Q ss_pred             ---CCCCeeEEEEccC
Q psy7830         200 ---EGGPYDVIFFGAG  212 (364)
Q Consensus       200 ---~~~~fD~Ii~~~~  212 (364)
                         ..+.+|+|+.+..
T Consensus        76 ~~~~~g~id~li~~Ag   91 (276)
T 1wma_A           76 LRKEYGGLDVLVNNAG   91 (276)
T ss_dssp             HHHHHSSEEEEEECCC
T ss_pred             HHHhcCCCCEEEECCc
Confidence               0136899987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	364
d1i1na_	224	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	9e-27
d1r18a_	223	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	1e-24
d1jg1a_	215	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	2e-17
d1vbfa_	224	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	5e-15
d1dl5a1	213	c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methylt	3e-12
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	1e-06
d1o54a_	266	c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo	2e-05
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	0.001
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	0.003
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	0.004

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 9e-27
 Identities = 62/208 (29%), Positives = 99/208 (47%), Gaps = 9/208 (4%)

Query: 61  RSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSY 120
            S+++ +  L++  ++   +V E   A  R+ +        + D P +   Q  +  P  
Sbjct: 6   ASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYA---KCNPYMDSPQSIGFQATISAPHM 62

Query: 121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLL-----LPETLNNSLKNIK 175
            A  LE L D L  G++ LD+GSG G +      +      +     + E +++S+ N++
Sbjct: 63  HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVR 122

Query: 176 ISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVG 235
              P LL S  ++ ++ D R G+AE  PYD I  GA    V + ++ QLKP GR++ PVG
Sbjct: 123 KDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVG 182

Query: 236 NVW-RQNLSVIDKGPDGSISSKILRRVS 262
                Q L   DK  DGSI  K L  V 
Sbjct: 183 PAGGNQMLEQYDKLQDGSIKMKPLMGVI 210

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 223

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 98.0 bits (243), Expect = 1e-24
 Identities = 54/213 (25%), Positives = 86/213 (40%), Gaps = 14/213 (6%)

Query: 61  RSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSY 120
            +  D +  LK+  ++    V +A     R  +    P+  + D P      V +  P  
Sbjct: 10  ANNEDLIRQLKDHGVIASDAVAQAMKETDRKHYS---PRNPYMDAPQPIGGGVTISAPHM 66

Query: 121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLL----------PETLNNS 170
            A  LE L DHL+ G+R+LD+GSG GY+          + +             E +  S
Sbjct: 67  HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRS 126

Query: 171 LKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRI 230
             N+      +L S  L  +  D R G+    PY+ I  GA   +    +++QL   GR+
Sbjct: 127 KANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRL 186

Query: 231 VAPVGNVWR-QNLSVIDKGPDGSISSKILRRVS 262
           + PVG     Q +   DK  +G +    L  V 
Sbjct: 187 IVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVM 219

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 215

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 78.0 bits (191), Expect = 2e-17
 Identities = 50/199 (25%), Positives = 79/199 (39%), Gaps = 7/199 (3%)

Query: 66  FLEGLKERKLLNHPRVEEAFYAVRRADFI-NVKPKFGFCDIPYAFANQVVMEPPSYIARC 124
            +E LK   ++    VE AF    R   + +   K+   D P        +  P  +A  
Sbjct: 11  TVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIM 70

Query: 125 LEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKISRPDLLQS 184
           LE    +L+ G  +L++G+G G+ A     +               L        +    
Sbjct: 71  LEI--ANLKPGMNILEVGTGSGWNAALISEIVKTDVYT--IERIPELVEFAKRNLERAGV 126

Query: 185 KTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNV-WRQNLS 243
           K +  IL D   G     PYDVI   AG  ++ + ++ QLK  G+++ PVG+    Q L 
Sbjct: 127 KNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHLWQELL 186

Query: 244 VIDKGPDGSISSKILRRVS 262
            + K  DG I  K    V+
Sbjct: 187 EVRKTKDG-IKIKNHGGVA 204

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} Length = 224

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 71.4 bits (174), Expect = 5e-15
 Identities = 40/188 (21%), Positives = 67/188 (35%), Gaps = 7/188 (3%)

Query: 76  LNHPRVEEAFYAVRRADFINVKPK-FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQN 134
           +    + EAF  V R+ F+    K + +     A      +   +            L  
Sbjct: 11  IKTQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDELDLHK 70

Query: 135 GSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA 194
           G +VL+IG+G GY       +          ++  + K    +   L     ++ IL D 
Sbjct: 71  GQKVLEIGTGIGYYTALIAEIVDK-----VVSVEINEKMYNYASKLLSYYNNIKLILGDG 125

Query: 195 RWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNVWRQNLSVIDKGPDGSIS 254
             G+ E  PYD +   A    +      QLK  G ++ P+G    Q L  + K  +   S
Sbjct: 126 TLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGVGRVQKLYKVIKKGNS-PS 184

Query: 255 SKILRRVS 262
            + L  V 
Sbjct: 185 LENLGEVM 192

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 213

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

 Score = 63.1 bits (152), Expect = 3e-12
 Identities = 49/206 (23%), Positives = 83/206 (40%), Gaps = 11/206 (5%)

Query: 64  ADFLEGLKERKLLNHPRVEEAFYAVRRADFI--NVKPKFGFCDIPY----AFANQVVMEP 117
                 LK+  + +   + +AF  + R +F+  +    + + DI                
Sbjct: 3   EKLFWILKKYGVSD--HIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQ 60

Query: 118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKIS 177
           PS +A  +E     L  G RVL+IG G GY A     +   + L++    +  +  I   
Sbjct: 61  PSLMALFMEW--VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR 118

Query: 178 RPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGNV 237
             + L  + + F+  D  +G  E  PYDVIF   G  EV +T  +QLK  GR++ P+   
Sbjct: 119 NVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLK 178

Query: 238 W-RQNLSVIDKGPDGSISSKILRRVS 262
             R+  + + K  D  +         
Sbjct: 179 LSRRQPAFLFKKKDPYLVGNYKLETR 204

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 46.4 bits (109), Expect = 1e-06
 Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 5/103 (4%)

Query: 132 LQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL 191
                  +D+G G G +         VR++   +    ++   +++         +  + 
Sbjct: 31  PGKNDVAVDVGCGTGGVTLELAG--RVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLME 88

Query: 192 KDARWGHAEGGPYDVIFFGAGTTEV---SKTILSQLKPNGRIV 231
            DA     +    D+   G    E+    + I  +LKP GRI+
Sbjct: 89  GDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRII 131

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.2 bits (101), Expect = 2e-05
 Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 5/135 (3%)

Query: 118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMA-TAKEWLSSVRQLLLPETLNNSLKNIKI 176
           P   +     L   ++ G R++D G G G M       + S  ++   E      K  + 
Sbjct: 89  PKDSSFIAMML--DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAES 146

Query: 177 SRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVA--PV 234
           +       + +   ++D   G  E     +                 LK  GR     P 
Sbjct: 147 NLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPT 206

Query: 235 GNVWRQNLSVIDKGP 249
            N  ++ L  + + P
Sbjct: 207 TNQVQETLKKLQELP 221

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.7 bits (87), Expect = 0.001
 Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 10/126 (7%)

Query: 118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWLSSVRQLLL-----PETLNNSLK 172
           P   A+ + +    +  G+RVL+ G+G G +  +          ++      +   ++ +
Sbjct: 82  PKDAAQIVHEG--DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARR 139

Query: 173 NIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTT-EVSKTILSQLKPNGRIV 231
           N+               ++ D        G  D          EV   +   L   G ++
Sbjct: 140 NVSGCYGQP--PDNWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLM 197

Query: 232 APVGNV 237
             V  V
Sbjct: 198 VYVATV 203

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.0 bits (85), Expect = 0.003
 Identities = 23/143 (16%), Positives = 49/143 (34%), Gaps = 20/143 (13%)

Query: 108 AFANQVVME-PPSYIARCLEQLVDHLQNGSRVLDIGSGQG----YMATAKEWLSSVRQLL 162
           AF+N V  E  P++++   +Q    L+ G   +D+GSG G      A       S    +
Sbjct: 191 AFSNYVYGELLPNFLSDVYQQC--QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEI 248

Query: 163 LPETLNNSLKNIKISRPDL-LQSKTLEFILKDARWGHAEGGPYDVIF------------F 209
           + +  + ++   +  +    L    L  +    +    +      +             F
Sbjct: 249 MDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLF 308

Query: 210 GAGTTEVSKTILSQLKPNGRIVA 232
                +  + IL   K   +I++
Sbjct: 309 DEDLNKKVEKILQTAKVGCKIIS 331

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.004
 Identities = 23/120 (19%), Positives = 38/120 (31%), Gaps = 14/120 (11%)

Query: 132 LQNGSRVLDIGSGQGYMATAKEWLSSVRQLLL-----PETLNNSLKNIKISRPDLLQSKT 186
           +  G  VL+ GSG G M+         +  ++      +  + + KN K  R     S  
Sbjct: 96  INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHV 155

Query: 187 ------LEFILKDAR--WGHAEGGPYDVIFFGAGT-TEVSKTILSQLKPNGRIVAPVGNV 237
                 ++FI KD        +   +D +                 LK  G     V N+
Sbjct: 156 EEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNI 215

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	364
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	100.0
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	100.0
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	100.0
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.97
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.96
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.87
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.77
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.76
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.7
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.7
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.7
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.66
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.66
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.65
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.62
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.61
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.61
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.6
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.6
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.59
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.58
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.58
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.56
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.55
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.55
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.55
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.55
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.54
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.54
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.54
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.52
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.52
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.52
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.51
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.49
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.46
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.43
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.4
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.38
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.38
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.37
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.37
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	99.37
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.35
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.34
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	99.34
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.33
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.33
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.33
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.32
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.32
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	99.3
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.29
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.29
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.28
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.28
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.28
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.27
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.25
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.24
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.23
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.22
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.2
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.18
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.18
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.16
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.12
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.12
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.1
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.04
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.02
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.96
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.92
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.91
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.83
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.79
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.76
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.76
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.72
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.71
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.7
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.7
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.67
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.63
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.58
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.57
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.57
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.57
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.54
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.53
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.44
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.43
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.29
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.22
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.21
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.16
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.04
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.0
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.0
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.68
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.65
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.57
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.54
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.47
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.42
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.42
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.32
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.27
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.21
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.19
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.12
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.1
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.05
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.95
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.9
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.88
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	96.76
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.72
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.7
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.59
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.53
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.26
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.14
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.1
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	95.98
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.78
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	95.59
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	95.56
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.46
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	95.4
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	95.38
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	95.12
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	94.81
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	94.67
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	94.13
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	93.19
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	92.65
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	92.43
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	92.37
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	92.1
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	91.55
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	91.12
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	90.92
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	90.02
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	89.71
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	89.69
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	87.72
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	84.33
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	83.65
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	83.44
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	82.33
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	82.28
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	82.21
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	81.45
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	81.29
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	80.22
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	80.1

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-34  Score=262.29  Aligned_cols=212  Identities=31%  Similarity=0.488  Sum_probs=189.0

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCccccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEE
Q psy7830          60 TRSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVL  139 (364)
Q Consensus        60 ~~~~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~~~~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VL  139 (364)
                      ..++++|+++|.+.|.+.++++.++|+.+||+.|+|..   +|.|.+++++.++++++|++++++++.|...+++|++||
T Consensus         5 ~~~~~~mv~~l~~~g~i~~~~v~~a~~~vpRe~Fvp~~---aY~D~~l~i~~~~~is~P~~~a~~le~L~~~l~~g~~VL   81 (224)
T d1i1na_           5 GASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCN---PYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKAL   81 (224)
T ss_dssp             CSSHHHHHHHHHHTTSCCSHHHHHHHHTSCGGGTCSSC---TTSSSCEEEETTEEECCHHHHHHHHHHTTTTSCTTCEEE
T ss_pred             cccHHHHHHHHHHcCCCCCHHHHHHHHhCCHHHcCCcc---cCCCCCccccchhhhhhhHHHHHHHHHHhhccCCCCeEE
Confidence            34688999999999999999999999999999999976   999999999999999999999999999976689999999


Q ss_pred             EECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChH
Q psy7830         140 DIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTT  214 (364)
Q Consensus       140 DiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~  214 (364)
                      |+|||+|+.+..+++.     +|+++|+++++++.|++++++..-..++..++.+..+|+...++..++||+|+++..++
T Consensus        82 diG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I~~~~~~~  161 (224)
T d1i1na_          82 DVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAP  161 (224)
T ss_dssp             EETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEECSBBS
T ss_pred             EecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhhhhhcchh
Confidence            9999999999998876     89999999999999999987621000224689999999988877778999999999999


Q ss_pred             HHHHHHHhccCCCcEEEEEEcCCC-cceEEEEEecCCCceeEEEeeceeEEeccCcccccC
Q psy7830         215 EVSKTILSQLKPNGRIVAPVGNVW-RQNLSVIDKGPDGSISSKILRRVSSDFLCNLEYQLH  274 (364)
Q Consensus       215 ~l~~~l~~~LkpGG~Lvi~~~~~~-~~~l~~~~~~~~g~~~~~~l~~~~f~~l~~~~~~~~  274 (364)
                      ++++.+.++|||||+||++++... .+.+.++.|..++.+....++.++|+||.+...+|.
T Consensus       162 ~ip~~l~~~LkpGG~LV~pv~~~~~~q~l~~~~k~~~~~~~~~~l~~v~fvPl~~~~~~~~  222 (224)
T d1i1na_         162 VVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWS  222 (224)
T ss_dssp             SCCHHHHHTEEEEEEEEEEESCTTSCEEEEEEEECTTSCEEEEEEEEECCCBCCCHHHHCC
T ss_pred             hcCHHHHhhcCCCcEEEEEEccCCCcEEEEEEEEeCCCeEEEEEEeeEEEECCCCchhhcc
Confidence            999999999999999999998765 667889999888889999999999999998766554

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=3.1e-33  Score=251.26  Aligned_cols=201  Identities=27%  Similarity=0.380  Sum_probs=185.1

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCcc-ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEE
Q psy7830          61 RSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPK-FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVL  139 (364)
Q Consensus        61 ~~~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~~~-~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VL  139 (364)
                      ..+..|+++|.+.|.+.++.++++|+.+||+.|+|..+. .+|.|.+++++.|+++++|++++++++.|.  +++|++||
T Consensus         6 e~~~~lv~~L~~~g~i~~~~v~~A~~~VpRe~Fvp~~~~~~AY~D~~l~i~~g~~is~P~~~a~ml~~L~--l~~g~~VL   83 (215)
T d1jg1a_           6 EKWMRTVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIAN--LKPGMNIL   83 (215)
T ss_dssp             HHHHHHHHHHHHTTSCCSHHHHHHHHHSCGGGGSCGGGGGGTTSSSCEECSTTCEECCHHHHHHHHHHHT--CCTTCCEE
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHcCCchhcCCHHHhhcccccCCcccchhhhhhhhhhHHHHHHhhc--cCccceEE
Confidence            456789999999999999999999999999999999877 889999999999999999999999999998  99999999


Q ss_pred             EECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChHHH
Q psy7830         140 DIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEV  216 (364)
Q Consensus       140 DiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~l  216 (364)
                      |||||+||.+..+++.   +|+++|.++.+++.|++++.+     .+..|+.++++|+...++..++||+|++++++..+
T Consensus        84 eIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~-----~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~~~i  158 (215)
T d1jg1a_          84 EVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLER-----AGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKI  158 (215)
T ss_dssp             EECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHH-----TTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSSC
T ss_pred             EecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHH-----cCCceeEEEECccccCCcccCcceeEEeecccccC
Confidence            9999999999999987   799999999999999999998     55689999999999887777899999999999999


Q ss_pred             HHHHHhccCCCcEEEEEEcCCC-cceEEEEEecCCCceeEEEeeceeEEeccCc
Q psy7830         217 SKTILSQLKPNGRIVAPVGNVW-RQNLSVIDKGPDGSISSKILRRVSSDFLCNL  269 (364)
Q Consensus       217 ~~~l~~~LkpGG~Lvi~~~~~~-~~~l~~~~~~~~g~~~~~~l~~~~f~~l~~~  269 (364)
                      +..+.++|||||+||++++... .+.+..+.|..++ +....++.++|+|+.+.
T Consensus       159 p~~l~~qL~~gGrLv~pv~~~~~~q~l~~~~k~~~~-~~~~~l~~v~fvPl~g~  211 (215)
T d1jg1a_         159 PEPLIEQLKIGGKLIIPVGSYHLWQELLEVRKTKDG-IKIKNHGGVAFVPLIGE  211 (215)
T ss_dssp             CHHHHHTEEEEEEEEEEECSSSSCEEEEEEEEETTE-EEEEEEEEECCCBCBST
T ss_pred             CHHHHHhcCCCCEEEEEEccCCccEEEEEEEEECCE-EEEEEEccEEEEcCCCc
Confidence            9999999999999999998876 5667778777655 88899999999999854

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=3.7e-33  Score=252.42  Aligned_cols=204  Identities=27%  Similarity=0.413  Sum_probs=181.5

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCccccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEE
Q psy7830          60 TRSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPKFGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVL  139 (364)
Q Consensus        60 ~~~~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~~~~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VL  139 (364)
                      ..++++|+++|.+.|.+.|+.+.++|+.+||+.|+|..   +|.|.+++++.|+++++|++++++++.|...+++|++||
T Consensus         9 ~~~~~~lv~~l~~~gvi~~~~v~~a~~~vpRe~Fvp~~---aY~D~~lpi~~~~~is~P~~~a~~l~~L~~~l~~g~~VL   85 (223)
T d1r18a_           9 GANNEDLIRQLKDHGVIASDAVAQAMKETDRKHYSPRN---PYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKPGARIL   85 (223)
T ss_dssp             CSSHHHHHHHHHHTTSCCCHHHHHHHHTSCGGGTCSSC---TTBSSCEEEETTEEECCHHHHHHHHHHTTTTCCTTCEEE
T ss_pred             CcCHHHHHHHHHHcCCCCCHHHHHHHHhCCHHHcCCcc---ccCCCCccccCCceeehhhhHHHHHHHHhhccCCCCeEE
Confidence            34678899999999988999999999999999999976   999999999999999999999999999955589999999


Q ss_pred             EECCCccHHHHHHHcc----------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830         140 DIGSGQGYMATAKEWL----------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF  209 (364)
Q Consensus       140 DiGcGsG~~a~~la~~----------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~  209 (364)
                      |||||+||.+..+++.          +|+++|+++++++.|++|+........+..|+.+..+|+...+++.++||+|++
T Consensus        86 eIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~~fD~Iiv  165 (223)
T d1r18a_          86 DVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHV  165 (223)
T ss_dssp             EESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGCSEEEEEE
T ss_pred             EecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccccceeeEEE
Confidence            9999999999999876          599999999999999998754100001235899999999988877789999999


Q ss_pred             ccChHHHHHHHHhccCCCcEEEEEEcCCC-cceEEEEEecCCCceeEEEeeceeEEec
Q psy7830         210 GAGTTEVSKTILSQLKPNGRIVAPVGNVW-RQNLSVIDKGPDGSISSKILRRVSSDFL  266 (364)
Q Consensus       210 ~~~~~~l~~~l~~~LkpGG~Lvi~~~~~~-~~~l~~~~~~~~g~~~~~~l~~~~f~~l  266 (364)
                      ++.++++++.+.++|||||+||++++... .+.+.++.|..+|.+....++.++|+||
T Consensus       166 ~~a~~~~p~~l~~~Lk~gG~lV~pvg~~~~~q~l~~i~k~~~g~~~~~~l~~v~FvPL  223 (223)
T d1r18a_         166 GAAAPDTPTELINQLASGGRLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVMYVPL  223 (223)
T ss_dssp             CSCBSSCCHHHHHTEEEEEEEEEEESCSSSCEEEEEEEECTTSCEEEEEEEEECCCCC
T ss_pred             EeechhchHHHHHhcCCCcEEEEEEecCCCcEEEEEEEEeCCCcEEEEEEeeEEeecC
Confidence            99999999999999999999999998654 6788999999899999999999999986

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.97  E-value=2.6e-30  Score=233.43  Aligned_cols=185  Identities=24%  Similarity=0.295  Sum_probs=168.4

Q ss_pred             CCCHHHHHHHHhCCCCCccCCCcc-ccccCC--CceecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHH
Q psy7830          76 LNHPRVEEAFYAVRRADFINVKPK-FGFCDI--PYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAK  152 (364)
Q Consensus        76 ~~~~~~~~a~~~v~R~~~~p~~~~-~~y~d~--~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~l  152 (364)
                      |.++.+.++|..+||+.|+|..++ .+|.|.  +++++.|.++++|++++++++.|.  +++|++|||||||+||+|..+
T Consensus        11 I~~~~v~~A~~~VpRe~Fvp~~~~~~AY~d~~~~l~i~~g~~~~~p~~~a~ml~~L~--l~~g~~VLdIG~GsGy~ta~L   88 (224)
T d1vbfa_          11 IKTQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDELD--LHKGQKVLEIGTGIGYYTALI   88 (224)
T ss_dssp             CCCHHHHHHHHHSCHHHHSCGGGGGGSSSSTTCCEEEETTEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHH
T ss_pred             CCCHHHHHHHHcCcHHHcCChhhhhcCccCcccCcccCCCCceehhhhHHHHHHHhh--hcccceEEEecCCCCHHHHHH
Confidence            789999999999999999999876 678765  588999999999999999999998  899999999999999999999


Q ss_pred             Hcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChHHHHHHHHhccCCCcEE
Q psy7830         153 EWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRI  230 (364)
Q Consensus       153 a~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~L  230 (364)
                      +++  +|+++|+++.+++.|++++..       ..|+.++.+|....+++.++||+|+++...+++++.+.++|||||+|
T Consensus        89 a~l~~~V~aiE~~~~~~~~A~~~~~~-------~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~~ip~~l~~qLk~GGrL  161 (224)
T d1vbfa_          89 AEIVDKVVSVEINEKMYNYASKLLSY-------YNNIKLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIM  161 (224)
T ss_dssp             HHHSSEEEEEESCHHHHHHHHHHHTT-------CSSEEEEESCGGGCCGGGCCEEEEEESSBBSSCCHHHHHTEEEEEEE
T ss_pred             HHHhcccccccccHHHHHHHHHHHhc-------ccccccccCchhhcchhhhhHHHHHhhcchhhhhHHHHHhcCCCCEE
Confidence            988  999999999999999998765       35999999999887776789999999999999999999999999999


Q ss_pred             EEEEcCCCcceEEEEEecCCCceeEEEeeceeEEeccCcc
Q psy7830         231 VAPVGNVWRQNLSVIDKGPDGSISSKILRRVSSDFLCNLE  270 (364)
Q Consensus       231 vi~~~~~~~~~l~~~~~~~~g~~~~~~l~~~~f~~l~~~~  270 (364)
                      |++++....+.+.++.|..+ .+..+.+++++|+|+.+..
T Consensus       162 V~pvg~~~~q~l~~i~k~~~-~~~~~~l~~v~F~pl~g~~  200 (224)
T d1vbfa_         162 ILPIGVGRVQKLYKVIKKGN-SPSLENLGEVMFGRIGGLY  200 (224)
T ss_dssp             EEEECSSSSEEEEEEECCTT-SCEEEEEEEECCCBCCSTT
T ss_pred             EEEEcCCCceEEEEEEEECC-ceEEEEeeeEEEEECCCcc
Confidence            99999888899999999765 4788999999999998754

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=4.3e-29  Score=224.20  Aligned_cols=198  Identities=25%  Similarity=0.338  Sum_probs=167.6

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCcc--ccccCCCcee----cCCCccChHHHHHHHHHHHhccCCCCC
Q psy7830          63 YADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPK--FGFCDIPYAF----ANQVVMEPPSYIARCLEQLVDHLQNGS  136 (364)
Q Consensus        63 ~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~~~--~~y~d~~l~i----g~g~~~s~P~~~a~~l~~L~~~l~~g~  136 (364)
                      ++.|++.|.+.| + ++.+.++|..+||+.|+|..+.  .+|.|..+..    +.+.++++|++++++++.+.  +++|+
T Consensus         2 ~~~l~~~l~~~g-i-~~~v~~a~~~v~Re~Fv~~~~~~~~~~~d~~~~~~~~~~~~~~i~~P~~~a~~l~~l~--l~~g~   77 (213)
T d1dl5a1           2 REKLFWILKKYG-V-SDHIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGM   77 (213)
T ss_dssp             HHHHHHHHHHTT-C-CHHHHHHHHHSCGGGGCSSCCCHHHHTSSSCEEEEECSSCEEEECCHHHHHHHHHHTT--CCTTC
T ss_pred             HHHHHHHHHHcC-C-CHHHHHHHHcCCHHHcCCchhhhhhhccCcccCcccCCccceeeccchhhHHHHHhhh--ccccc
Confidence            567999999998 4 4589999999999999998865  5677777654    33467899999999999998  89999


Q ss_pred             EEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEcc
Q psy7830         137 RVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGA  211 (364)
Q Consensus       137 ~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~  211 (364)
                      +|||+|||+|+++..+++.     +|+++|+++.+++.|+++++.     .+..|+.++++|+...++..++||+|+++.
T Consensus        78 ~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~-----~~~~n~~~~~~d~~~~~~~~~~fD~I~~~~  152 (213)
T d1dl5a1          78 RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER-----LGIENVIFVCGDGYYGVPEFSPYDVIFVTV  152 (213)
T ss_dssp             EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH-----TTCCSEEEEESCGGGCCGGGCCEEEEEECS
T ss_pred             eEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhh-----hcccccccccCchHHccccccchhhhhhhc
Confidence            9999999999999999876     799999999999999999988     345799999999988777678899999999


Q ss_pred             ChHHHHHHHHhccCCCcEEEEEEcCCC-cceEEEEEecCCCceeEEEeeceeEEeccCc
Q psy7830         212 GTTEVSKTILSQLKPNGRIVAPVGNVW-RQNLSVIDKGPDGSISSKILRRVSSDFLCNL  269 (364)
Q Consensus       212 ~~~~l~~~l~~~LkpGG~Lvi~~~~~~-~~~l~~~~~~~~g~~~~~~l~~~~f~~l~~~  269 (364)
                      .++++++.+.++|||||+|+++++... ........+..++.+....++.++|+|+.+.
T Consensus       153 ~~~~~p~~l~~~LkpGG~lv~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fvpl~g~  211 (213)
T d1dl5a1         153 GVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKKDPYLVGNYKLETRFITAGGN  211 (213)
T ss_dssp             BBSCCCHHHHHHEEEEEEEEEEBCBGGGTBCEEEEEEEETTEEEEEEEEECCCCBCCGG
T ss_pred             cHHHhHHHHHHhcCCCcEEEEEECccCCcEEEEEEEEEeCCeEEEEEEeeEEEEECCCC
Confidence            999999999999999999999987654 2223333444567788889999999998764

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=1.7e-22  Score=185.29  Aligned_cols=148  Identities=21%  Similarity=0.207  Sum_probs=117.7

Q ss_pred             CCCHHHHHHHH------hCCCCCccCCCcc------ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEECC
Q psy7830          76 LNHPRVEEAFY------AVRRADFINVKPK------FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGS  143 (364)
Q Consensus        76 ~~~~~~~~a~~------~v~R~~~~p~~~~------~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGc  143 (364)
                      +.+++|.....      .+.+.+++|+|+.      ....|++++||+|.|.    ++..|+++|..+.++|++|||+||
T Consensus        54 i~~~dW~~~w~~~~~p~~~~~~~v~~~~~~~~~~~~~i~i~pg~aFGTG~H~----TT~l~l~~l~~~~~~g~~VLDiGc  129 (254)
T d2nxca1          54 VGDEDWLEAWRRDLKPALAPPFVVLAPWHTWEGAEIPLVIEPGMAFGTGHHE----TTRLALKALARHLRPGDKVLDLGT  129 (254)
T ss_dssp             CCHHHHHHHHHHHCCCEEETTEEEECTTCCCCSSSEEEECCCC-----CCSH----HHHHHHHHHHHHCCTTCEEEEETC
T ss_pred             cCcchHHHHHHhhCCCEEECCEEEEeccccCCCcceEEEEccccccCccccc----hhhHHHHHHHhhcCccCEEEEccc
Confidence            45556644432      2456777788754      5678999999999999    999999999988999999999999


Q ss_pred             CccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChHH---HHH
Q psy7830         144 GQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTE---VSK  218 (364)
Q Consensus       144 GsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~---l~~  218 (364)
                      |+|.+++.+++.  +|+|+|+|+.+++.|++|++.+.     . ++++..+|...... .++||+|++|...+.   +++
T Consensus       130 GsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~-----~-~~~~~~~d~~~~~~-~~~fD~V~ani~~~~l~~l~~  202 (254)
T d2nxca1         130 GSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNG-----V-RPRFLEGSLEAALP-FGPFDLLVANLYAELHAALAP  202 (254)
T ss_dssp             TTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTT-----C-CCEEEESCHHHHGG-GCCEEEEEEECCHHHHHHHHH
T ss_pred             chhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcC-----C-ceeEEecccccccc-ccccchhhhccccccHHHHHH
Confidence            999999999888  99999999999999999998844     2 56788888765433 478999999987754   567


Q ss_pred             HHHhccCCCcEEEEEE
Q psy7830         219 TILSQLKPNGRIVAPV  234 (364)
Q Consensus       219 ~l~~~LkpGG~Lvi~~  234 (364)
                      .+.+.|||||+|+++-
T Consensus       203 ~~~~~LkpGG~lilSg  218 (254)
T d2nxca1         203 RYREALVPGGRALLTG  218 (254)
T ss_dssp             HHHHHEEEEEEEEEEE
T ss_pred             HHHHhcCCCcEEEEEe
Confidence            8999999999999863

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.77  E-value=1.3e-18  Score=156.57  Aligned_cols=111  Identities=17%  Similarity=0.146  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC
Q psy7830         118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR  195 (364)
Q Consensus       118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~  195 (364)
                      ++.+..+++.+.  +++|++|||||||+|.++..+++.  +|+|+|+|+.|++.|++++..+     +.+++.++++|+.
T Consensus         2 ~~~~~~l~~~~~--~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~-----~~~~~~~~~~d~~   74 (234)
T d1xxla_           2 HHSLGLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEK-----GVENVRFQQGTAE   74 (234)
T ss_dssp             HHHHHHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHH-----TCCSEEEEECBTT
T ss_pred             chHHHHHHHHhC--CCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhccc-----ccccccccccccc
Confidence            456677788887  899999999999999999999988  9999999999999999998873     2468999999999


Q ss_pred             CCCCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEc
Q psy7830         196 WGHAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       196 ~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      +.+.++++||+|++..++++      +++++.++|||||++++...
T Consensus        75 ~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~  120 (234)
T d1xxla_          75 SLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH  120 (234)
T ss_dssp             BCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEc
Confidence            88777889999999888865      57899999999999998653

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.76  E-value=2.1e-18  Score=154.06  Aligned_cols=108  Identities=18%  Similarity=0.200  Sum_probs=95.4

Q ss_pred             HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC
Q psy7830         121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH  198 (364)
Q Consensus       121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~  198 (364)
                      ++++++.+.  ++++++|||||||+|.++..+++.  +|+|+|+|+.|++.|++++..     .+.++++++++|+.+.+
T Consensus         4 ~~~ll~~~~--l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~-----~~~~~i~~~~~d~~~l~   76 (231)
T d1vl5a_           4 LAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEG-----NGHQQVEYVQGDAEQMP   76 (231)
T ss_dssp             HHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHH-----TTCCSEEEEECCC-CCC
T ss_pred             HHHHHHhcC--CCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhcccc-----ccccccccccccccccc
Confidence            477888877  899999999999999999999988  999999999999999999887     33579999999999887


Q ss_pred             CCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEc
Q psy7830         199 AEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       199 ~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      .++++||+|++...+++      ++.++.++|||||++++...
T Consensus        77 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~  119 (231)
T d1vl5a_          77 FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDN  119 (231)
T ss_dssp             SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence            77789999999988865      57899999999999998653

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=5e-17  Score=147.12  Aligned_cols=113  Identities=21%  Similarity=0.162  Sum_probs=94.9

Q ss_pred             ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830         116 EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK  192 (364)
Q Consensus       116 s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~  192 (364)
                      ..|.....+.+.+.  +.||++|||||||+|..+..+++.   +|+|+|+|+.+++.|+++.....   + .++++++.+
T Consensus        17 ~~~~~~~~l~~~~~--l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~g---l-~~~v~~~~~   90 (245)
T d1nkva_          17 FTEEKYATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELG---V-SERVHFIHN   90 (245)
T ss_dssp             CCHHHHHHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTT---C-TTTEEEEES
T ss_pred             CCHHHHHHHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhh---c-cccchhhhh
Confidence            34556677777776  899999999999999999998875   99999999999999999988722   2 247999999


Q ss_pred             CCCCCCCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEc
Q psy7830         193 DARWGHAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       193 D~~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      |+.+... +++||+|++...+++      +++++.+.|||||++++...
T Consensus        91 d~~~~~~-~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~  138 (245)
T d1nkva_          91 DAAGYVA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEP  138 (245)
T ss_dssp             CCTTCCC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             HHhhccc-cCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEec
Confidence            9988744 578999999877764      67899999999999998753

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.70  E-value=5.8e-17  Score=143.50  Aligned_cols=109  Identities=22%  Similarity=0.281  Sum_probs=92.3

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA  199 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~  199 (364)
                      ..+...+.++++++.+|||||||+|.++..+++.  +|+|+|+|+.|++.|++++....      .++.++.+|+.+.+.
T Consensus        25 ~~~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~------~~~~~~~~d~~~l~~   98 (226)
T d1ve3a1          25 ETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE------SNVEFIVGDARKLSF   98 (226)
T ss_dssp             HHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCCEEEECCTTSCCS
T ss_pred             HHHHHHHHHhcCCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhcccc------ccccccccccccccc
Confidence            3444455556788999999999999999999988  99999999999999999887621      367889999998877


Q ss_pred             CCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEcC
Q psy7830         200 EGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       200 ~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      .+++||+|++..++++        +++++.++|||||++++...+
T Consensus        99 ~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1          99 EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             CTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            7789999999888764        567899999999999988755

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.70  E-value=4.1e-17  Score=142.03  Aligned_cols=116  Identities=17%  Similarity=0.162  Sum_probs=99.2

Q ss_pred             cChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830         115 MEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK  192 (364)
Q Consensus       115 ~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~  192 (364)
                      ++...+.+.++..+.  +.+|++|||+|||+|.+++.+++.  +|+++|+++.+++.|++|++++.   + .++++++++
T Consensus        16 ~t~~eir~~il~~l~--~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~g---l-~~~v~~~~g   89 (186)
T d1l3ia_          16 PTAMEVRCLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHG---L-GDNVTLMEG   89 (186)
T ss_dssp             CCCHHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTT---C-CTTEEEEES
T ss_pred             CChHHHHHHHHHhcC--CCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcC---C-CcceEEEEC
Confidence            455567788888887  899999999999999999999988  99999999999999999998832   2 259999999


Q ss_pred             CCCCCCCCCCCeeEEEEccCh---HHHHHHHHhccCCCcEEEEEEcC
Q psy7830         193 DARWGHAEGGPYDVIFFGAGT---TEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       193 D~~~~~~~~~~fD~Ii~~~~~---~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      |+.+.......||.|+++...   ..+++.+.+.|||||++++....
T Consensus        90 da~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~  136 (186)
T d1l3ia_          90 DAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAIL  136 (186)
T ss_dssp             CHHHHHTTSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred             chhhcccccCCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEeec
Confidence            988766656789999998765   45788999999999999987754

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.66  E-value=2.7e-16  Score=145.23  Aligned_cols=99  Identities=20%  Similarity=0.143  Sum_probs=87.0

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      +.++++|||||||+|.++..+++.   +|+|+|+++.+++.|+++.....   + .+++++.++|+.+++.++++||+|+
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~g---l-~~~v~~~~~d~~~l~~~~~sfD~V~  140 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAG---L-ADNITVKYGSFLEIPCEDNSYDFIW  140 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHT---C-TTTEEEEECCTTSCSSCTTCEEEEE
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccc---c-cccccccccccccccccccccchhh
Confidence            678999999999999999999876   89999999999999999988722   2 2589999999999887778999999


Q ss_pred             EccChHH------HHHHHHhccCCCcEEEEEE
Q psy7830         209 FGAGTTE------VSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       209 ~~~~~~~------l~~~l~~~LkpGG~Lvi~~  234 (364)
                      +..++++      ++.++.++|||||++++..
T Consensus       141 ~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~  172 (282)
T d2o57a1         141 SQDAFLHSPDKLKVFQECARVLKPRGVMAITD  172 (282)
T ss_dssp             EESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccchhhhccCHHHHHHHHHHhcCCCcEEEEEE
Confidence            9888765      6789999999999999865

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.66  E-value=3.1e-16  Score=143.60  Aligned_cols=125  Identities=14%  Similarity=0.137  Sum_probs=107.0

Q ss_pred             ecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHh-cCCCCC
Q psy7830         109 FANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKI-SRPDLL  182 (364)
Q Consensus       109 ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~-~~~~~l  182 (364)
                      +..++.+-.|.-.+.++.++.  ++||++|||+|||+|+++..+++.     +|+++|+++++++.|++|++. ..   .
T Consensus        73 ~~r~tqiiypkD~s~Ii~~l~--i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~---~  147 (264)
T d1i9ga_          73 MPRGPQVIYPKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG---Q  147 (264)
T ss_dssp             SCSCSCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT---S
T ss_pred             ccCCccccchHHHHHHHHHhC--CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhcc---C
Confidence            344566677888899999998  899999999999999999999986     999999999999999999987 22   2


Q ss_pred             CCCCEEEEEcCCCCCCCCCCCeeEEEEccChHH-HHHHHHhccCCCcEEEEEEcCCC
Q psy7830         183 QSKTLEFILKDARWGHAEGGPYDVIFFGAGTTE-VSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       183 ~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~-l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      ...|+.+.++|+.+...+++.||.|+++.+-++ .++.+.+.|||||++++.+++-.
T Consensus       148 ~~~nv~~~~~d~~~~~~~~~~fDaV~ldlp~P~~~l~~~~~~LkpGG~lv~~~P~i~  204 (264)
T d1i9ga_         148 PPDNWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATVT  204 (264)
T ss_dssp             CCTTEEEECSCGGGCCCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESSHH
T ss_pred             CCceEEEEecccccccccCCCcceEEEecCCHHHHHHHHHhccCCCCEEEEEeCccC
Confidence            246999999999877666789999999887764 67899999999999999887753

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.65  E-value=4.9e-16  Score=135.94  Aligned_cols=111  Identities=19%  Similarity=0.230  Sum_probs=92.4

Q ss_pred             HHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC
Q psy7830         121 IARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH  198 (364)
Q Consensus       121 ~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~  198 (364)
                      +..+++.+.  ..++.+|||+|||+|.++..+++.  +|+++|+|+.+++.+++|++.+.   +...++++..+|..+..
T Consensus        41 t~lLi~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~---l~~~~i~~~~~d~~~~~  115 (194)
T d1dusa_          41 TKILVENVV--VDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNN---LDNYDIRVVHSDLYENV  115 (194)
T ss_dssp             HHHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTT---CTTSCEEEEECSTTTTC
T ss_pred             HHHHHHhCC--cCCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhC---CccceEEEEEcchhhhh
Confidence            456677765  678999999999999999999988  99999999999999999998744   44457999999987643


Q ss_pred             CCCCCeeEEEEccChH-------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         199 AEGGPYDVIFFGAGTT-------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       199 ~~~~~fD~Ii~~~~~~-------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                       .+++||+|+++.+++       .+++.+.+.|||||++++.+...
T Consensus       116 -~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  160 (194)
T d1dusa_         116 -KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             -TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             -ccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEeCc
Confidence             457899999987753       36788899999999998876554

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.62  E-value=6.5e-16  Score=140.48  Aligned_cols=120  Identities=14%  Similarity=0.114  Sum_probs=89.7

Q ss_pred             CCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCC
Q psy7830         111 NQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSK  185 (364)
Q Consensus       111 ~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~  185 (364)
                      .+..+-.|.-.+.++.++.  ++||++|||+|||+|+++..+++.     +|+++|+++++++.|++|+++..    ...
T Consensus        64 r~~qiiypkD~~~Ii~~l~--i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~----~~~  137 (250)
T d1yb2a1          64 RNTQIISEIDASYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY----DIG  137 (250)
T ss_dssp             -----------------CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS----CCT
T ss_pred             CCCcccCHHHHHHHHHHcC--CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc----CCC
Confidence            3445555666677888887  899999999999999999999875     89999999999999999998721    246


Q ss_pred             CEEEEEcCCCCCCCCCCCeeEEEEccChH-HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         186 TLEFILKDARWGHAEGGPYDVIFFGAGTT-EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       186 ~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~-~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      |+++..+|+.+... +..||.|+++.+.+ .+++.+.+.|||||+|++.+++.
T Consensus       138 nv~~~~~Di~~~~~-~~~fD~V~ld~p~p~~~l~~~~~~LKpGG~lv~~~P~i  189 (250)
T d1yb2a1         138 NVRTSRSDIADFIS-DQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLPNF  189 (250)
T ss_dssp             TEEEECSCTTTCCC-SCCEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred             ceEEEEeeeecccc-cceeeeeeecCCchHHHHHHHHHhcCCCceEEEEeCCc
Confidence            99999999987654 47899999987765 47789999999999999987763

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.61  E-value=1.6e-15  Score=135.80  Aligned_cols=101  Identities=22%  Similarity=0.159  Sum_probs=83.5

Q ss_pred             HHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCC
Q psy7830         125 LEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGG  202 (364)
Q Consensus       125 l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~  202 (364)
                      ...+.+++.++.+|||+|||+|.++..+++.  +|+|+|+|+.|++.|+++...           .++.+|+.+++.+++
T Consensus        33 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~-----------~~~~~~~~~l~~~~~  101 (246)
T d2avna1          33 GSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK-----------NVVEAKAEDLPFPSG  101 (246)
T ss_dssp             HHHHHHHCCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS-----------CEEECCTTSCCSCTT
T ss_pred             HHHHHHhcCCCCEEEEECCCCchhcccccccceEEEEeeccccccccccccccc-----------ccccccccccccccc
Confidence            3344455678899999999999999999998  999999999999999986421           256789888877678


Q ss_pred             CeeEEEEcc-ChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830         203 PYDVIFFGA-GTTE------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       203 ~fD~Ii~~~-~~~~------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +||+|++.. .+++      +++++.+.|||||++++++.+
T Consensus       102 ~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~  142 (246)
T d2avna1         102 AFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDN  142 (246)
T ss_dssp             CEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             cccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECC
Confidence            999999864 4554      568999999999999998864

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.61  E-value=3.9e-15  Score=130.18  Aligned_cols=98  Identities=18%  Similarity=0.097  Sum_probs=84.3

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF  209 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~  209 (364)
                      +.+ .+|||+|||+|..+..+++.  +|+|+|+|+.+++.++++...     .+.+++++...|+....+ +++||+|++
T Consensus        29 ~~~-grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~-----~~~~~~~~~~~d~~~~~~-~~~fD~I~~  101 (198)
T d2i6ga1          29 VAP-GRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAA-----EGLDNLQTDLVDLNTLTF-DGEYDFILS  101 (198)
T ss_dssp             SCS-CEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----TTCTTEEEEECCTTTCCC-CCCEEEEEE
T ss_pred             CCC-CcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhh-----ccccchhhhheecccccc-cccccEEEE
Confidence            344 49999999999999999998  999999999999999998887     334689999999987765 578999999


Q ss_pred             ccChHH--------HHHHHHhccCCCcEEEEEEcC
Q psy7830         210 GAGTTE--------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       210 ~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +..+++        ++.++.++|+|||++++....
T Consensus       102 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  136 (198)
T d2i6ga1         102 TVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAM  136 (198)
T ss_dssp             ESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             eeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            887764        667899999999999986644

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.60  E-value=2.1e-15  Score=136.06  Aligned_cols=111  Identities=15%  Similarity=0.133  Sum_probs=89.4

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG  197 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~  197 (364)
                      ....+++.+..+..++.+|||+|||+|.++..+++.  +|+|+|+|+.|++.|++++....      .+++++++|+...
T Consensus        23 ~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~------~~v~~~~~d~~~~   96 (246)
T d1y8ca_          23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQG------LKPRLACQDISNL   96 (246)
T ss_dssp             HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTT------CCCEEECCCGGGC
T ss_pred             HHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccC------ccceeeccchhhh
Confidence            445566666544456789999999999999999998  99999999999999999887622      3799999999887


Q ss_pred             CCCCCCeeEEEEcc-ChH---------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         198 HAEGGPYDVIFFGA-GTT---------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       198 ~~~~~~fD~Ii~~~-~~~---------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      .. .++||+|++.. .+.         .+++.+.+.|||||.+++.+.+.
T Consensus        97 ~~-~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  145 (246)
T d1y8ca_          97 NI-NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSY  145 (246)
T ss_dssp             CC-SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             cc-cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCCH
Confidence            65 46899999742 222         26789999999999999877543

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.60  E-value=4e-15  Score=132.67  Aligned_cols=110  Identities=15%  Similarity=0.106  Sum_probs=88.8

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD  193 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D  193 (364)
                      +...+...+..+++++.+|||+|||+|..+..+++.      +|+|+|+|+.|++.|++++....   . ..++.+..+|
T Consensus        25 ~~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~---~-~~~~~~~~~d  100 (225)
T d1im8a_          25 IITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH---S-EIPVEILCND  100 (225)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSC---C-SSCEEEECSC
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhc---c-cchhhhccch
Confidence            455566666667889999999999999999988863      89999999999999999987621   1 2478888888


Q ss_pred             CCCCCCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEc
Q psy7830         194 ARWGHAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       194 ~~~~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      ....+  ...+|+|+++..+++        +++++.+.|||||.+++...
T Consensus       101 ~~~~~--~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~  148 (225)
T d1im8a_         101 IRHVE--IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK  148 (225)
T ss_dssp             TTTCC--CCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhccc--cccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccc
Confidence            87654  357899998876643        68999999999999998653

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.59  E-value=4.8e-15  Score=133.53  Aligned_cols=98  Identities=19%  Similarity=0.177  Sum_probs=83.3

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF  209 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~  209 (364)
                      ..++.+|||+|||+|..+..+++.  +|+|+|+|+.|++.|++++....      .++++.++|+.++..+ ++||+|++
T Consensus        39 ~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~------~~i~~~~~d~~~l~~~-~~fD~I~~  111 (251)
T d1wzna1          39 KREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERN------LKIEFLQGDVLEIAFK-NEFDAVTM  111 (251)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCCEEEESCGGGCCCC-SCEEEEEE
T ss_pred             CCCCCEEEEeCCCCCccchhhcccceEEEEEeecccccccccccccccc------ccchheehhhhhcccc-cccchHhh
Confidence            356779999999999999999988  99999999999999999987722      3799999999988764 68999998


Q ss_pred             cc-ChH--------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         210 GA-GTT--------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       210 ~~-~~~--------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      .. .+.        .+++++.++|||||++++...+
T Consensus       112 ~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~  147 (251)
T d1wzna1         112 FFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (251)
T ss_dssp             CSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence            53 332        3678999999999999998765

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.4e-15  Score=133.97  Aligned_cols=99  Identities=18%  Similarity=0.128  Sum_probs=84.8

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF  209 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~  209 (364)
                      .++.+|||+|||+|..+..++..   +|+|+|+|+.|++.|++++..     .+..+++++++|+.+.....++||+|++
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~-----~~~~~~~f~~~d~~~~~~~~~~fD~I~~  133 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGE-----EGKRVRNYFCCGLQDFTPEPDSYDVIWI  133 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGG-----GGGGEEEEEECCGGGCCCCSSCEEEEEE
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccc-----cccccccccccccccccccccccccccc
Confidence            56789999999999999987654   899999999999999999877     2235889999999988766789999999


Q ss_pred             ccChHH--------HHHHHHhccCCCcEEEEEEcC
Q psy7830         210 GAGTTE--------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       210 ~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ..++++        ++.++.+.|||||.+++....
T Consensus       134 ~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~  168 (222)
T d2ex4a1         134 QWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNM  168 (222)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ccccccchhhhhhhHHHHHHHhcCCcceEEEEEcc
Confidence            888754        567899999999999997644

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.58  E-value=4e-15  Score=135.09  Aligned_cols=104  Identities=20%  Similarity=0.202  Sum_probs=85.7

Q ss_pred             ccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC-CCCCee
Q psy7830         130 DHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA-EGGPYD  205 (364)
Q Consensus       130 ~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~-~~~~fD  205 (364)
                      .+.+++.+|||+|||+|..+..+++.   +|+|+|+|+.|++.|+++.....   . ..++.+.++|+..... ..++||
T Consensus        20 ~~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~---~-~~~v~f~~~D~~~~~~~~~~~fD   95 (252)
T d1ri5a_          20 LYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMK---R-RFKVFFRAQDSYGRHMDLGKEFD   95 (252)
T ss_dssp             HHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSC---C-SSEEEEEESCTTTSCCCCSSCEE
T ss_pred             HhCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcC---C-CcceEEEEcchhhhcccccccce
Confidence            34689999999999999998888876   79999999999999999887621   1 2479999999976544 246899


Q ss_pred             EEEEccChHH----------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         206 VIFFGAGTTE----------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       206 ~Ii~~~~~~~----------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +|++..++++          ++.++.+.|||||++++.+.+.
T Consensus        96 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~  137 (252)
T d1ri5a_          96 VISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR  137 (252)
T ss_dssp             EEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             EEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCH
Confidence            9999888764          4578899999999999988664

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=4.4e-15  Score=136.32  Aligned_cols=95  Identities=17%  Similarity=0.234  Sum_probs=83.6

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      .++.+|||+|||+|.++..+++.    +++|+|+|+.|++.|+++.          +++.+.++|+.+++..+++||+|+
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~----------~~~~~~~~d~~~l~~~~~sfD~v~  152 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----------PQVTFCVASSHRLPFSDTSMDAII  152 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----------TTSEEEECCTTSCSBCTTCEEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc----------ccccceeeehhhccCCCCCEEEEe
Confidence            57789999999999999999876    8999999999999998763          478999999999888788999999


Q ss_pred             EccChHHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         209 FGAGTTEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       209 ~~~~~~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      +....++ ++++.++|||||++++.++...
T Consensus       153 ~~~~~~~-~~e~~rvLkpgG~l~~~~p~~~  181 (268)
T d1p91a_         153 RIYAPCK-AEELARVVKPGGWVITATPGPR  181 (268)
T ss_dssp             EESCCCC-HHHHHHHEEEEEEEEEEEECTT
T ss_pred             ecCCHHH-HHHHHHHhCCCcEEEEEeeCCc
Confidence            8877665 5789999999999999987653

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.55  E-value=1.4e-14  Score=133.86  Aligned_cols=107  Identities=17%  Similarity=0.158  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC
Q psy7830         119 SYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR  195 (364)
Q Consensus       119 ~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~  195 (364)
                      ..+..+++.|.  +++|++|||||||+|.++..+++.   +|+|+|+|+.+++.|++++.+..   + ..++.+...|..
T Consensus        39 ~k~~~~~~~l~--l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~---l-~~~~~~~~~d~~  112 (280)
T d2fk8a1          39 AKVDLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASID---T-NRSRQVLLQGWE  112 (280)
T ss_dssp             HHHHHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSC---C-SSCEEEEESCGG
T ss_pred             HHHHHHHHHcC--CCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhc---c-ccchhhhhhhhh
Confidence            34566666665  789999999999999999998876   99999999999999999988722   2 246788888865


Q ss_pred             CCCCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEE
Q psy7830         196 WGHAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       196 ~~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ..   .++||.|++...+++        +++++.++|||||++++..
T Consensus       113 ~~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         113 DF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             GC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             hh---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence            44   368999999887765        5788999999999999865

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.55  E-value=1.3e-14  Score=129.49  Aligned_cols=105  Identities=15%  Similarity=0.153  Sum_probs=86.7

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA  199 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~  199 (364)
                      ..+++.+.+.. .+.+|||||||+|.++..+++.  +|+|+|+|+++++.|+++..         .++.++.+|+.+...
T Consensus         9 ~~~~~~~~~~~-~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~---------~~~~~~~~~~~~~~~   78 (225)
T d2p7ia1           9 PFMVRAFTPFF-RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK---------DGITYIHSRFEDAQL   78 (225)
T ss_dssp             HHHHHHHGGGC-CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSC---------SCEEEEESCGGGCCC
T ss_pred             HHHHHHhhhhC-CCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccc---------ccccccccccccccc
Confidence            44555555433 4668999999999999999987  99999999999999988752         379999999887665


Q ss_pred             CCCCeeEEEEccChHH------HHHHHH-hccCCCcEEEEEEcCC
Q psy7830         200 EGGPYDVIFFGAGTTE------VSKTIL-SQLKPNGRIVAPVGNV  237 (364)
Q Consensus       200 ~~~~fD~Ii~~~~~~~------l~~~l~-~~LkpGG~Lvi~~~~~  237 (364)
                       +++||+|++..+++|      ++.++. ++|||||.+++.+++.
T Consensus        79 -~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~  122 (225)
T d2p7ia1          79 -PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNA  122 (225)
T ss_dssp             -SSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred             -ccccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEEeCCc
Confidence             478999999999876      456776 7899999999998764

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.55  E-value=1.2e-14  Score=133.20  Aligned_cols=122  Identities=16%  Similarity=0.176  Sum_probs=101.6

Q ss_pred             ecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCC
Q psy7830         109 FANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQ  183 (364)
Q Consensus       109 ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~  183 (364)
                      +..++.+..|...+.++.++.  +++|++|||+|||+|+++..+++.     +|+++|+++++++.|++|+++..   + 
T Consensus        80 ~~r~~qiiypkd~~~Ii~~l~--i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g---~-  153 (266)
T d1o54a_          80 MKRRTQIVYPKDSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG---L-  153 (266)
T ss_dssp             CCC-CCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT---C-
T ss_pred             ccCCccccchHHHHHHHHhhC--CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc---c-
Confidence            344566677888899999998  999999999999999999999875     89999999999999999998822   1 


Q ss_pred             CCCEEEEEcCCCCCCCCCCCeeEEEEccChH-HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         184 SKTLEFILKDARWGHAEGGPYDVIFFGAGTT-EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       184 ~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~-~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ..++.+...|+..... ...||.|+.+.+-. .+++++.++|||||+|++.++..
T Consensus       154 ~~~v~~~~~d~~~~~~-~~~~D~V~~d~p~p~~~l~~~~~~LKpGG~lv~~~P~~  207 (266)
T d1o54a_         154 IERVTIKVRDISEGFD-EKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTT  207 (266)
T ss_dssp             GGGEEEECCCGGGCCS-CCSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred             ccCcEEEecccccccc-ccceeeeEecCCCHHHHHHHHHhhcCCCCEEEEEeCcc
Confidence            2588999999765433 46799999987765 47899999999999999887653

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.55  E-value=6.8e-15  Score=126.88  Aligned_cols=116  Identities=11%  Similarity=-0.031  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcC-CC------CCCCCCEE
Q psy7830         118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISR-PD------LLQSKTLE  188 (364)
Q Consensus       118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~-~~------~l~~~~v~  188 (364)
                      |.+ ..++..|.  +.+|.+|||+|||+|..+..+++.  +|+|+|+|+.|++.|++++.... ..      .....++.
T Consensus         7 ~~~-~~~~~~l~--~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (201)
T d1pjza_           7 KDL-QQYWSSLN--VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIE   83 (201)
T ss_dssp             HHH-HHHHHHHC--CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSE
T ss_pred             HHH-HHHHHHcC--CCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccc
Confidence            443 34556665  789999999999999999999988  99999999999999999875411 00      00113567


Q ss_pred             EEEcCCCCCCCC-CCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEcC
Q psy7830         189 FILKDARWGHAE-GGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       189 ~~~~D~~~~~~~-~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ++.+|....... ...||+|++...+++        ..+.+.+.|||||++++....
T Consensus        84 ~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~  140 (201)
T d1pjza_          84 IWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLE  140 (201)
T ss_dssp             EEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred             eecccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcc
Confidence            888888776543 357999998777653        567899999999998876544

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.5e-14  Score=136.12  Aligned_cols=127  Identities=19%  Similarity=0.202  Sum_probs=101.3

Q ss_pred             ecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHh-cC----
Q psy7830         109 FANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKI-SR----  178 (364)
Q Consensus       109 ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~-~~----  178 (364)
                      +..++.+-.|.-.+.++.++.  ++||++|||+|||+|+++..+++.     +|+++|+++++++.|++|+++ +.    
T Consensus        75 ~~r~tqiiypkD~~~Il~~l~--i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~  152 (324)
T d2b25a1          75 MKRGTAITFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKL  152 (324)
T ss_dssp             SCCSSCCCCHHHHHHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCCcccccccHHHHHHHhC--CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhh
Confidence            445667778888899999998  999999999999999999999986     899999999999999999875 10    


Q ss_pred             CCC-CCCCCEEEEEcCCCCCCC--CCCCeeEEEEccChHH-HHHHHHhccCCCcEEEEEEcCC
Q psy7830         179 PDL-LQSKTLEFILKDARWGHA--EGGPYDVIFFGAGTTE-VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       179 ~~~-l~~~~v~~~~~D~~~~~~--~~~~fD~Ii~~~~~~~-l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ... -..+|+.+..+|+.....  ....||.|+.+.+-++ .++++.++|||||+|++.+++-
T Consensus       153 ~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~LD~p~P~~~l~~~~~~LKpGG~lv~~~P~i  215 (324)
T d2b25a1         153 SHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNI  215 (324)
T ss_dssp             TCSSCCCCCEEEEESCTTCCC-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred             hhhhccccceeEEecchhhcccccCCCCcceEeecCcCHHHHHHHHHHhccCCCEEEEEeCCH
Confidence            000 113589999999876533  2457999999877654 7889999999999999988664

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=1.5e-14  Score=132.93  Aligned_cols=132  Identities=17%  Similarity=0.206  Sum_probs=105.2

Q ss_pred             ccccCCCceecCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHH
Q psy7830         100 FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIK  175 (364)
Q Consensus       100 ~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~  175 (364)
                      ..|..-.+.++.+..+++|.+-..+-..+......+.+|||+|||||..++.++..    +|+++|+|+.+++.|++|+.
T Consensus        74 ~~F~~~~~~v~~~VlIPRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~  153 (274)
T d2b3ta1          74 REFWSLPLFVSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQ  153 (274)
T ss_dssp             EEETTEEEECCTTSCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHH
T ss_pred             EEEeeeEEEEeccccccccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHH
Confidence            45666677888899999998744433344433456789999999999999999876    99999999999999999999


Q ss_pred             hcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChH-------------------------------HHHHHHHhcc
Q psy7830         176 ISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTT-------------------------------EVSKTILSQL  224 (364)
Q Consensus       176 ~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~-------------------------------~l~~~l~~~L  224 (364)
                      .+     +..|++++.+|...... +.+||+|++|.++-                               .++....+.|
T Consensus       154 ~~-----~~~~v~~~~~d~~~~~~-~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L  227 (274)
T d2b3ta1         154 HL-----AIKNIHILQSDWFSALA-GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNAL  227 (274)
T ss_dssp             HH-----TCCSEEEECCSTTGGGT-TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGE
T ss_pred             Hh-----CcccceeeecccccccC-CCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhc
Confidence            83     34689999999876543 46899999997751                               1457788899


Q ss_pred             CCCcEEEEEEcCC
Q psy7830         225 KPNGRIVAPVGNV  237 (364)
Q Consensus       225 kpGG~Lvi~~~~~  237 (364)
                      +|||.+++.++..
T Consensus       228 ~~~G~l~lEig~~  240 (274)
T d2b3ta1         228 VSGGFLLLEHGWQ  240 (274)
T ss_dssp             EEEEEEEEECCSS
T ss_pred             CCCCEEEEEECch
Confidence            9999999988764

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.54  E-value=2.1e-14  Score=133.33  Aligned_cols=109  Identities=17%  Similarity=0.101  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC
Q psy7830         118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA  194 (364)
Q Consensus       118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~  194 (364)
                      -.++..+++.+.  +++|++|||||||.|.++..+++.   +|+|+++|+..++.+++++....   + ..++.+...|.
T Consensus        47 ~~k~~~~~~~l~--l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~---l-~~~v~~~~~d~  120 (291)
T d1kpia_          47 YAKRKLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVD---S-PRRKEVRIQGW  120 (291)
T ss_dssp             HHHHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSC---C-SSCEEEEECCG
T ss_pred             HHHHHHHHHhcC--CCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhc---c-chhhhhhhhcc
Confidence            345677777776  899999999999999999999876   99999999999999999988722   2 24688888886


Q ss_pred             CCCCCCCCCeeEEEEccChHH---------------HHHHHHhccCCCcEEEEEEc
Q psy7830         195 RWGHAEGGPYDVIFFGAGTTE---------------VSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       195 ~~~~~~~~~fD~Ii~~~~~~~---------------l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      ..   .+++||.|++...++|               +++.+.++|||||++++..-
T Consensus       121 ~~---~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i  173 (291)
T d1kpia_         121 EE---FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI  173 (291)
T ss_dssp             GG---CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEE
T ss_pred             cc---cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEE
Confidence            42   3578999999888765               57889999999999998764

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.52  E-value=3.7e-14  Score=131.22  Aligned_cols=107  Identities=19%  Similarity=0.115  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHh-cCCCCCCCCCEEEEEcCC
Q psy7830         119 SYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKI-SRPDLLQSKTLEFILKDA  194 (364)
Q Consensus       119 ~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~-~~~~~l~~~~v~~~~~D~  194 (364)
                      .++..+++.+.  +++|++|||||||.|.++..+++.   +|+|+++|+..++.|++++.+ +.     .+++++..+|.
T Consensus        49 ~k~~~~~~~l~--l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~-----~~~v~~~~~d~  121 (285)
T d1kpga_          49 AKIDLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN-----LRSKRVLLAGW  121 (285)
T ss_dssp             HHHHHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCC-----CSCEEEEESCG
T ss_pred             HHHHHHHHHcC--CCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhh-----hhhhHHHHhhh
Confidence            34566666665  789999999999999999998887   999999999999999998877 32     36899999998


Q ss_pred             CCCCCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEc
Q psy7830         195 RWGHAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       195 ~~~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      ...   +++||.|++...+++        +++++.++|||||++++...
T Consensus       122 ~~~---~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i  167 (285)
T d1kpga_         122 EQF---DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI  167 (285)
T ss_dssp             GGC---CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             hcc---cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEE
Confidence            655   368999999877765        57899999999999998653

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.52  E-value=3.4e-14  Score=131.12  Aligned_cols=98  Identities=17%  Similarity=0.192  Sum_probs=84.9

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDV  206 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~  206 (364)
                      +.++.+|||+|||+|.++..+++.     +|+|+|+|+.+++.|++++...     + .++++..+|+...... ++||+
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~-----~-~~~~f~~~d~~~~~~~-~~fD~   97 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-----P-YDSEFLEGDATEIELN-DKYDI   97 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSS-----S-SEEEEEESCTTTCCCS-SCEEE
T ss_pred             cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccc-----c-cccccccccccccccc-CCceE
Confidence            467789999999999999999875     7999999999999999998772     2 2799999999877653 57999


Q ss_pred             EEEccChHH------HHHHHHhccCCCcEEEEEEcC
Q psy7830         207 IFFGAGTTE------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       207 Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      |+++..+++      +++++.+.|||||.+++..+.
T Consensus        98 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~  133 (281)
T d2gh1a1          98 AICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  133 (281)
T ss_dssp             EEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence            999988865      578999999999999988765

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.52  E-value=2.4e-14  Score=130.44  Aligned_cols=97  Identities=21%  Similarity=0.185  Sum_probs=83.4

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF  209 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~  209 (364)
                      .++.+|||+|||+|..+..++..   .|+++|+++.|++.|++++..       .++++++++|+.++.+.+++||+|++
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~I~~  164 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG-------MPVGKFILASMETATLPPNTYDLIVI  164 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT-------SSEEEEEESCGGGCCCCSSCEEEEEE
T ss_pred             CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccc-------cccceeEEccccccccCCCccceEEe
Confidence            46789999999999999987754   899999999999999988754       34789999999888776789999999


Q ss_pred             ccChHH--------HHHHHHhccCCCcEEEEEEcC
Q psy7830         210 GAGTTE--------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       210 ~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ..+++|        +++++.+.|||||++++....
T Consensus       165 ~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~  199 (254)
T d1xtpa_         165 QWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENC  199 (254)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             eccccccchhhhHHHHHHHHHhcCCCcEEEEEecC
Confidence            988865        467899999999999987644

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.51  E-value=2.6e-14  Score=125.36  Aligned_cols=92  Identities=15%  Similarity=0.111  Sum_probs=79.5

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcceEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEcc
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWLSSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGA  211 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~  211 (364)
                      +.++.+|||||||+|.++..++  +++|+|+|+.+++.++++            ++.++++|+.+.+..+++||+|+++.
T Consensus        34 ~~~~~~vLDiGcG~G~~~~~~~--~~~giD~s~~~~~~a~~~------------~~~~~~~d~~~l~~~~~~fD~I~~~~   99 (208)
T d1vlma_          34 LLPEGRGVEIGVGTGRFAVPLK--IKIGVEPSERMAEIARKR------------GVFVLKGTAENLPLKDESFDFALMVT   99 (208)
T ss_dssp             HCCSSCEEEETCTTSTTHHHHT--CCEEEESCHHHHHHHHHT------------TCEEEECBTTBCCSCTTCEEEEEEES
T ss_pred             hCCCCeEEEECCCCcccccccc--eEEEEeCChhhccccccc------------cccccccccccccccccccccccccc
Confidence            4567799999999999887775  579999999999998763            68899999998877778999999998


Q ss_pred             ChHH------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         212 GTTE------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       212 ~~~~------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ++++      +++++.+.|+|||.+++...+.
T Consensus       100 ~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~  131 (208)
T d1vlma_         100 TICFVDDPERALKEAYRILKKGGYLIVGIVDR  131 (208)
T ss_dssp             CGGGSSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             ccccccccccchhhhhhcCCCCceEEEEecCC
Confidence            8875      5789999999999999988654

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=5.3e-14  Score=125.78  Aligned_cols=118  Identities=14%  Similarity=-0.043  Sum_probs=90.4

Q ss_pred             hHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcC---------CC---CC
Q psy7830         117 PPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISR---------PD---LL  182 (364)
Q Consensus       117 ~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~---------~~---~l  182 (364)
                      .|.++..+-+.+.  +.++.+|||+|||+|..+..|++.  +|+|+|+|+.+++.|+++.....         ..   ..
T Consensus        30 ~~~l~~~~~~~l~--~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~  107 (229)
T d2bzga1          30 HQLLKKHLDTFLK--GKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKS  107 (229)
T ss_dssp             CHHHHHHHHHHHT--TCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEE
T ss_pred             CHHHHHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeee
Confidence            3556555555555  678999999999999999999999  99999999999999998764310         00   01


Q ss_pred             CCCCEEEEEcCCCCCCC-CCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEcC
Q psy7830         183 QSKTLEFILKDARWGHA-EGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       183 ~~~~v~~~~~D~~~~~~-~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ...+++++++|...... ..+.||+|+....+++        ....+.++|||||++++....
T Consensus       108 ~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~  170 (229)
T d2bzga1         108 SSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLS  170 (229)
T ss_dssp             TTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             cCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcc
Confidence            12479999999887653 3478999998776653        567999999999998876543

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.46  E-value=1.1e-13  Score=122.31  Aligned_cols=96  Identities=18%  Similarity=0.146  Sum_probs=79.6

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC---CCCe
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE---GGPY  204 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~---~~~f  204 (364)
                      ++||++|||+|||+|+.+..+++.    +|+|+|+++.|++.++++++..       +|+.++.+|+......   ...+
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~-------~ni~~i~~d~~~~~~~~~~~~~v  126 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-------NNIIPLLFDASKPWKYSGIVEKV  126 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-------SSEEEECSCTTCGGGTTTTCCCE
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc-------CCceEEEeeccCccccccccceE
Confidence            789999999999999999999986    8999999999999999998772       4899999998764322   2357


Q ss_pred             eEEEEccChH----HHHHHHHhccCCCcEEEEEE
Q psy7830         205 DVIFFGAGTT----EVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       205 D~Ii~~~~~~----~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      |+|+.+....    .++.++.+.|||||++++..
T Consensus       127 d~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         127 DLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEecccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            7777665432    36789999999999999876

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2e-13  Score=122.15  Aligned_cols=94  Identities=15%  Similarity=0.096  Sum_probs=75.7

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC--CCCCCCeeEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG--HAEGGPYDVI  207 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~--~~~~~~fD~I  207 (364)
                      .+|++|||||||+|+.+..+++.   +|+++|+|+.+++.|+++.....      .++.++..|+...  ...+++||.|
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~fD~i  125 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT------HKVIPLKGLWEDVAPTLPDGHFDGI  125 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS------SEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc------cccccccccccccccccccccccce
Confidence            67899999999999999999986   89999999999999999987622      3678888776532  2335789999


Q ss_pred             EEccCh-----------HHHHHHHHhccCCCcEEEE
Q psy7830         208 FFGAGT-----------TEVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       208 i~~~~~-----------~~l~~~l~~~LkpGG~Lvi  232 (364)
                      +.+...           ..+++++.++|||||++++
T Consensus       126 ~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~  161 (229)
T d1zx0a1         126 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY  161 (229)
T ss_dssp             EECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred             eecccccccccccccCHHHHHHHHHHHcCCCcEEEE
Confidence            865332           1256789999999999986

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.40  E-value=5.5e-13  Score=117.38  Aligned_cols=98  Identities=13%  Similarity=0.203  Sum_probs=83.3

Q ss_pred             CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--CCCCCeeEE
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH--AEGGPYDVI  207 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~--~~~~~fD~I  207 (364)
                      ++-.|||||||+|..+..+|+.    .++|+|+++.++..+.+++.+     .+.+|+.++.+|+..+.  ..++++|.|
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~-----~~l~Nv~~~~~Da~~l~~~~~~~~~d~v  103 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKD-----SEAQNVKLLNIDADTLTDVFEPGEVKRV  103 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH-----SCCSSEEEECCCGGGHHHHCCTTSCCEE
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHH-----HhccCchhcccchhhhhcccCchhhhcc
Confidence            4457999999999999999987    899999999999999999988     34579999999987653  346789999


Q ss_pred             EEccChH--------------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         208 FFGAGTT--------------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       208 i~~~~~~--------------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +++.+.+              .+++.+.+.|||||.|++.+..
T Consensus       104 ~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~  146 (204)
T d2fcaa1         104 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN  146 (204)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC
T ss_pred             ccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECC
Confidence            8887653              4788999999999999987644

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.38  E-value=5.4e-13  Score=119.56  Aligned_cols=110  Identities=15%  Similarity=0.093  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHhc-cCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830         119 SYIARCLEQLVD-HLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD  193 (364)
Q Consensus       119 ~~~a~~l~~L~~-~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D  193 (364)
                      .+.+.++..+.. .+++|++|||+|||+|+.+..++..    .|+|+|+|+.|++.+++++..       .+++..+.+|
T Consensus        58 klaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~-------~~ni~~i~~d  130 (230)
T d1g8sa_          58 KLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE-------RENIIPILGD  130 (230)
T ss_dssp             HHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT-------CTTEEEEECC
T ss_pred             HHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhh-------hcccceEEEe
Confidence            354555554432 2689999999999999999999986    899999999999999998765       2588888888


Q ss_pred             CCCCCC-CCCCeeEE--EEccCh----HHHHHHHHhccCCCcEEEEEEc
Q psy7830         194 ARWGHA-EGGPYDVI--FFGAGT----TEVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       194 ~~~~~~-~~~~fD~I--i~~~~~----~~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      ...... .+..+|++  +.....    ..++.++.+.|||||++++...
T Consensus       131 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k  179 (230)
T d1g8sa_         131 ANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIK  179 (230)
T ss_dssp             TTCGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eccCcccccccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEee
Confidence            775432 23345554  433221    2367899999999999998763

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.38  E-value=1.3e-12  Score=118.44  Aligned_cols=105  Identities=21%  Similarity=0.187  Sum_probs=84.7

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG  197 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~  197 (364)
                      ..+++.+.  .....+|||||||+|..+..+++.    +++++|+ +++++.+++++....   + .++++++.+|+.+.
T Consensus        70 ~~~~~~~d--~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---~-~~rv~~~~~D~~~~  142 (253)
T d1tw3a2          70 DAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG---L-SDRVDVVEGDFFEP  142 (253)
T ss_dssp             HHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT---C-TTTEEEEECCTTSC
T ss_pred             HHHHhhcC--CccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhh---c-ccchhhccccchhh
Confidence            44555554  567789999999999999999987    8899998 678999999988722   1 25899999998754


Q ss_pred             CCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEc
Q psy7830         198 HAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       198 ~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      .+  .+||+|++...+++        +++++++.|||||+|++...
T Consensus       143 ~~--~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~  186 (253)
T d1tw3a2         143 LP--RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER  186 (253)
T ss_dssp             CS--SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             cc--cchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence            32  57999999888763        57899999999999998654

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.37  E-value=9.6e-13  Score=117.63  Aligned_cols=109  Identities=21%  Similarity=0.163  Sum_probs=85.6

Q ss_pred             HHHHHHHHHhc-cCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830         120 YIARCLEQLVD-HLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD  193 (364)
Q Consensus       120 ~~a~~l~~L~~-~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D  193 (364)
                      +.+.++.-+.. .++||++|||+|||+|+.+..+++.     +|+|+|+++.+++.++++++.       ..++..+..|
T Consensus        58 laa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~-------~~~~~~i~~d  130 (227)
T d1g8aa_          58 LGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-------RRNIVPILGD  130 (227)
T ss_dssp             HHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-------CTTEEEEECC
T ss_pred             HHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh-------cCCceEEEEE
Confidence            44555443321 2689999999999999999999986     899999999999999998865       2478888888


Q ss_pred             CCCCC---CCCCCeeEEEEccChH----HHHHHHHhccCCCcEEEEEEc
Q psy7830         194 ARWGH---AEGGPYDVIFFGAGTT----EVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       194 ~~~~~---~~~~~fD~Ii~~~~~~----~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      .....   .....+|+|+++....    .++.++.+.|||||++++++-
T Consensus       131 ~~~~~~~~~~~~~vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~~k  179 (227)
T d1g8aa_         131 ATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVK  179 (227)
T ss_dssp             TTCGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCcccccccccceEEEEEEccccchHHHHHHHHHHhcccCCeEEEEEE
Confidence            75432   2236799999886653    367899999999999998763

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.37  E-value=8.8e-13  Score=124.05  Aligned_cols=111  Identities=20%  Similarity=0.231  Sum_probs=90.4

Q ss_pred             HHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--
Q psy7830         124 CLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH--  198 (364)
Q Consensus       124 ~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~--  198 (364)
                      ...++..++++|.+|||+|||+|.+++.++..   +|+++|+++.+++.+++|+..|.   +. .+++++++|+.+..  
T Consensus       135 ~r~~~~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ng---l~-~~~~~~~~d~~~~~~~  210 (324)
T d2as0a2         135 NRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNG---VE-DRMKFIVGSAFEEMEK  210 (324)
T ss_dssp             HHHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT---CG-GGEEEEESCHHHHHHH
T ss_pred             HHHHHHhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcC---CC-ccceeeechhhhhhHH
Confidence            34444555788999999999999999988876   89999999999999999999854   32 47999999986532  


Q ss_pred             --CCCCCeeEEEEccCh---------------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         199 --AEGGPYDVIFFGAGT---------------TEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       199 --~~~~~fD~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                        ....+||+|+++.+.               ..++....++|+|||+|+++.....
T Consensus       211 ~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~  267 (324)
T d2as0a2         211 LQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH  267 (324)
T ss_dssp             HHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred             HHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence              234689999998874               2367788899999999999886654

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.37  E-value=2.6e-13  Score=127.12  Aligned_cols=177  Identities=15%  Similarity=0.050  Sum_probs=130.0

Q ss_pred             eeeccCCCccchhhhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCC---cc--ccccCCCceecCCCccC
Q psy7830          42 LRSEMYDEDNENEENFFYTRSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVK---PK--FGFCDIPYAFANQVVME  116 (364)
Q Consensus        42 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~---~~--~~y~d~~l~ig~g~~~s  116 (364)
                      ++.++....+...|+|+.+.+.+++.+.|.+.|+...+.     ...+....++..   ..  ..|.++.+.+++.+++ 
T Consensus        33 l~~a~~~~~p~~iRvN~~k~~~e~~~~~L~~~g~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~G~~~vQD~aS~-  106 (313)
T d1ixka_          33 IAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRV-----PWAKEGFCLTREPFSITSTPEFLTGLIYIQEASSM-  106 (313)
T ss_dssp             HHHHTTSCCCCEEEECTTTSCHHHHHHHHHHTTCEEEEE-----TTEEEEEEEEECSSCGGGSHHHHTTSEEECCHHHH-
T ss_pred             HHHHcCCCCCeEEEEcCCcCCHHHHHHHHHhCCCceEEC-----CCCcchhhhccCCCccccCHhhhhceEEEeccccc-
Confidence            455666666667799999999999999998887422111     001111111111   01  4577777888876544 


Q ss_pred             hHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830         117 PPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL  191 (364)
Q Consensus       117 ~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~  191 (364)
                         +++.+   |.  +++|++|||+|||+|+.+..++..     .++++|+++..+...++++++     ++..++.+..
T Consensus       107 ---l~~~~---l~--~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r-----~~~~~i~~~~  173 (313)
T d1ixka_         107 ---YPPVA---LD--PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSR-----LGVLNVILFH  173 (313)
T ss_dssp             ---HHHHH---HC--CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH-----HTCCSEEEES
T ss_pred             ---chhhc---cc--CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHH-----HHhhcccccc
Confidence               44433   33  689999999999999999998865     799999999999999999998     4457888888


Q ss_pred             cCCCCCCCCCCCeeEEEEccChHH----------------------------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         192 KDARWGHAEGGPYDVIFFGAGTTE----------------------------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       192 ~D~~~~~~~~~~fD~Ii~~~~~~~----------------------------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      .|..........||.|+++.+|..                            ++....+.|||||+||.++-+-
T Consensus       174 ~d~~~~~~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl  247 (313)
T d1ixka_         174 SSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  247 (313)
T ss_dssp             SCGGGGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             ccccccccccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence            887766554578999999988742                            5678889999999999998664

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=8.4e-13  Score=122.00  Aligned_cols=112  Identities=21%  Similarity=0.106  Sum_probs=80.5

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC--
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG--  197 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~--  197 (364)
                      ..+++.+.  .+++.+|||+|||+|..+..+++.  +|+|+|+|+.|++.|+++....... ....+..+...|....  
T Consensus        46 ~~l~~~l~--~~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  122 (292)
T d1xvaa_          46 AWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKE-PAFDKWVIEEANWLTLDK  122 (292)
T ss_dssp             HHHHHHHH--HTTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTS-HHHHTCEEEECCGGGHHH
T ss_pred             HHHHHHhh--hcCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccc-cccceeeeeecccccccc
Confidence            45556665  356789999999999999999998  9999999999999999987652100 0001234444554321  


Q ss_pred             -CCCCCCeeEEEEcc-ChH-------------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         198 -HAEGGPYDVIFFGA-GTT-------------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       198 -~~~~~~fD~Ii~~~-~~~-------------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                       .+...+||.|++.. .+.             .+++++.+.|||||+|++...+
T Consensus       123 ~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  176 (292)
T d1xvaa_         123 DVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  176 (292)
T ss_dssp             HSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             ccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence             12246899998743 333             2689999999999999998754

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.34  E-value=3.3e-12  Score=112.30  Aligned_cols=98  Identities=16%  Similarity=0.214  Sum_probs=83.0

Q ss_pred             CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC--CCCCCeeEE
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH--AEGGPYDVI  207 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~--~~~~~fD~I  207 (364)
                      .+-.|||||||+|.++..+|+.    .++|+|+++.++..|.+++.+     .+.+|+.+..+|+..+.  .+..++|.|
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~-----~~l~Ni~~~~~da~~l~~~~~~~~~~~i  105 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLE-----VGVPNIKLLWVDGSDLTDYFEDGEIDRL  105 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH-----HCCSSEEEEECCSSCGGGTSCTTCCSEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhh-----hccccceeeecCHHHHhhhccCCceehh
Confidence            4457999999999999999987    899999999999999999888     33579999999987653  345789999


Q ss_pred             EEccChH--------------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         208 FFGAGTT--------------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       208 i~~~~~~--------------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +++.+.+              .+++.+.+.|||||.|.+.+..
T Consensus       106 ~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~  148 (204)
T d1yzha1         106 YLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN  148 (204)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred             cccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECC
Confidence            9887653              4788999999999999987754

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3e-12  Score=118.66  Aligned_cols=169  Identities=11%  Similarity=-0.001  Sum_probs=121.7

Q ss_pred             hhhcccHHHHHHHHHHHHHcCCCC--CHHHHHHHHhCCCCC-----ccCCCcc----------ccccCCCceecCCCccC
Q psy7830          54 EENFFYTRSYADFLEGLKERKLLN--HPRVEEAFYAVRRAD-----FINVKPK----------FGFCDIPYAFANQVVME  116 (364)
Q Consensus        54 ~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~a~~~v~R~~-----~~p~~~~----------~~y~d~~l~ig~g~~~s  116 (364)
                      .|+|+++.+.+++.+.|.+.|...  .......+.......     ++|....          ..|.++.+.+++.+++ 
T Consensus         6 ~RVNtlk~~~ee~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~~G~~~~QD~sS~-   84 (293)
T d2b9ea1           6 VRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASC-   84 (293)
T ss_dssp             EEECTTTCCHHHHHHHHHHTTCEEEEECSSHHHHHTCCTTEEEECSSSTTEEEECTTCCCTTSHHHHTTSEEECCTGGG-
T ss_pred             EEECCCcCCHHHHHHHHHHcCCccccccccchhhhhcccccccccCCCCCeEEeCCCCCcccChHHhCcEEEEcCCccc-
Confidence            478888889999999998887322  122233444333322     2222110          3467777888887766 


Q ss_pred             hHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830         117 PPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL  191 (364)
Q Consensus       117 ~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~  191 (364)
                         +++.++   .  .++|++|||+|||+|+.|..++.+     +|+++|+++..++..++|+++     ++..++.+..
T Consensus        85 ---l~~~~L---~--~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r-----~g~~~~~~~~  151 (293)
T d2b9ea1          85 ---LPAMLL---D--PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLAR-----AGVSCCELAE  151 (293)
T ss_dssp             ---HHHHHH---C--CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH-----TTCCSEEEEE
T ss_pred             ---cccccc---C--CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHh-----cCccceeeee
Confidence               555444   3  689999999999999999998865     899999999999999999999     5568999999


Q ss_pred             cCCCCCCCC---CCCeeEEEEccChHH------------------------------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         192 KDARWGHAE---GGPYDVIFFGAGTTE------------------------------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       192 ~D~~~~~~~---~~~fD~Ii~~~~~~~------------------------------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      .|.......   .+.||.|+++.+|..                              ++.... .++|||+||.++-+-
T Consensus       152 ~d~~~~~~~~~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl  229 (293)
T d2b9ea1         152 EDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL  229 (293)
T ss_dssp             CCGGGSCTTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred             hhhhhhcccccccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence            998765432   257999999988732                              122333 479999999888653

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.33  E-value=2.9e-12  Score=120.05  Aligned_cols=105  Identities=18%  Similarity=0.154  Sum_probs=88.1

Q ss_pred             cCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC----CCCCC
Q psy7830         131 HLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH----AEGGP  203 (364)
Q Consensus       131 ~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~----~~~~~  203 (364)
                      .+.+|.+|||++||+|.+++.++..   +|+++|+|+.+++.+++|++.|.   ++..+++++.+|+.+..    ....+
T Consensus       141 ~~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~---l~~~~~~~i~~d~~~~l~~~~~~~~~  217 (317)
T d2b78a2         141 GSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANH---LDMANHQLVVMDVFDYFKYARRHHLT  217 (317)
T ss_dssp             TTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTT---CCCTTEEEEESCHHHHHHHHHHTTCC
T ss_pred             HhhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhc---ccCcceEEEEccHHHHHHHHHhhcCC
Confidence            3568999999999999999987765   89999999999999999998865   55568999999986542    23468


Q ss_pred             eeEEEEccCh---------------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         204 YDVIFFGAGT---------------TEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       204 fD~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      ||+|+++.+.               ..+...+.++|+|||.|+++.....
T Consensus       218 fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~  267 (317)
T d2b78a2         218 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN  267 (317)
T ss_dssp             EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             CCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence            9999998773               2477888999999999999887654

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.33  E-value=1.2e-12  Score=122.87  Aligned_cols=101  Identities=20%  Similarity=0.176  Sum_probs=84.8

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC----CCCCCCeeE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG----HAEGGPYDV  206 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~----~~~~~~fD~  206 (364)
                      .+|.+|||+|||+|.++++++..  +|+++|+|+.+++.+++|++.|.     ..+++++.+|+.+.    ....++||+
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ng-----l~~~~~i~~d~~~~~~~~~~~~~~fD~  218 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNG-----LGNVRVLEANAFDLLRRLEKEGERFDL  218 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTT-----CTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             hCCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcC-----CCCcceeeccHHHHhhhhHhhhcCCCE
Confidence            46899999999999999998866  99999999999999999999844     46899999998653    223468999


Q ss_pred             EEEccCh---------------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         207 IFFGAGT---------------TEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       207 Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      |+++.++               ..++..+.++|||||.|+++..+..
T Consensus       219 Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~  265 (318)
T d1wxxa2         219 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH  265 (318)
T ss_dssp             EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             EEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence            9998764               1366788999999999999887653

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.7e-12  Score=122.29  Aligned_cols=116  Identities=14%  Similarity=0.069  Sum_probs=89.2

Q ss_pred             ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHh-cC---CCCCCCCCE
Q psy7830         116 EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKI-SR---PDLLQSKTL  187 (364)
Q Consensus       116 s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~-~~---~~~l~~~~v  187 (364)
                      ..+..+..+++.+.  ++++++|||+|||+|..+..+++.    +++|+|+++.+++.|+++.+. ..   ...+...++
T Consensus       135 ~~~~~~~~~~~~~~--l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i  212 (328)
T d1nw3a_         135 TSFDLVAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEY  212 (328)
T ss_dssp             CCHHHHHHHHHHSC--CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred             hHHHHHHHHHHHcC--CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCce
Confidence            45678888898886  899999999999999999988765    799999999999999887654 10   000223589


Q ss_pred             EEEEcCCCCCCCCCC--CeeEEEEccChH-----HHHHHHHhccCCCcEEEEE
Q psy7830         188 EFILKDARWGHAEGG--PYDVIFFGAGTT-----EVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       188 ~~~~~D~~~~~~~~~--~fD~Ii~~~~~~-----~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +++++|+.+....+.  .+|+|+++..+.     ..+.++.+.|||||++|+.
T Consensus       213 ~~~~gd~~~~~~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         213 TLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             EEEECCTTSHHHHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             EEEECcccccccccccCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEe
Confidence            999999976543322  358888876542     3567899999999999864

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.32  E-value=4.5e-12  Score=108.33  Aligned_cols=124  Identities=15%  Similarity=0.112  Sum_probs=86.0

Q ss_pred             cCCCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE
Q psy7830         110 ANQVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL  187 (364)
Q Consensus       110 g~g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v  187 (364)
                      +.+..++.-.+...+.++|..++..|.+|||+|||+|.+++.++..  +|+++|.|+.+++.+++|++.+.   +. .++
T Consensus        17 ~~~~Rpt~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~---~~-~~v   92 (171)
T d1ws6a1          17 PASARPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTG---LG-ARV   92 (171)
T ss_dssp             CTTCCCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHT---CC-CEE
T ss_pred             CCCCCCCcHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhc---cc-cce
Confidence            3344443333445666777766788999999999999999988877  99999999999999999998833   21 234


Q ss_pred             EEEEcCCCC--CCCCCCCeeEEEEccChH----HHHHHH--HhccCCCcEEEEEEcCC
Q psy7830         188 EFILKDARW--GHAEGGPYDVIFFGAGTT----EVSKTI--LSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       188 ~~~~~D~~~--~~~~~~~fD~Ii~~~~~~----~l~~~l--~~~LkpGG~Lvi~~~~~  237 (364)
                      ....+|...  ......+||+|+++.++.    .++..+  ..+|+|||++++.....
T Consensus        93 ~~~~~d~~~~~~~~~~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie~~~~  150 (171)
T d1ws6a1          93 VALPVEVFLPEAKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             ECSCHHHHHHHHHHTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred             eeeehhcccccccccCCccceeEEccccccCHHHHHHHHHHcCCcCCCeEEEEEecCC
Confidence            333333211  112346899999998753    344433  35799999999866443

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1e-12  Score=118.33  Aligned_cols=110  Identities=16%  Similarity=0.066  Sum_probs=76.7

Q ss_pred             HHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCC---------------
Q psy7830         124 CLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSK---------------  185 (364)
Q Consensus       124 ~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~---------------  185 (364)
                      +.+.+.....+|.+|||+|||+|..+..++..   +|+|+|+|+.+++.|++++....   ....               
T Consensus        41 ~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~  117 (257)
T d2a14a1          41 LHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEP---GAYDWTPAVKFACELEGNS  117 (257)
T ss_dssp             HHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCT---TCCCCHHHHHHHHHHTTCG
T ss_pred             HHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhcc---ccchhhhHHHHHHHhcccc
Confidence            33433333457889999999999988777655   89999999999999999987521   0000               


Q ss_pred             ------------CE-EEEEcCCC----CCCCCCCCeeEEEEccChHHH----------HHHHHhccCCCcEEEEEEcC
Q psy7830         186 ------------TL-EFILKDAR----WGHAEGGPYDVIFFGAGTTEV----------SKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       186 ------------~v-~~~~~D~~----~~~~~~~~fD~Ii~~~~~~~l----------~~~l~~~LkpGG~Lvi~~~~  236 (364)
                                  ++ .....+..    ..+...++||+|++...++++          ++++.++|||||++++....
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~  195 (257)
T d2a14a1         118 GRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL  195 (257)
T ss_dssp             GGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             chHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEec
Confidence                        01 11112211    122335789999998887653          57899999999999987654

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=3.6e-13  Score=124.51  Aligned_cols=178  Identities=18%  Similarity=0.096  Sum_probs=125.7

Q ss_pred             ceeeccCCCccchhhhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCccCCCcc----ccccCCCceecCCCccC
Q psy7830          41 DLRSEMYDEDNENEENFFYTRSYADFLEGLKERKLLNHPRVEEAFYAVRRADFINVKPK----FGFCDIPYAFANQVVME  116 (364)
Q Consensus        41 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~a~~~v~R~~~~p~~~~----~~y~d~~l~ig~g~~~s  116 (364)
                      .++.+++..++...|+|+.+.+++++.+.|.+.|+...+.     ...+....++....    ..|.++.+.+++-+++ 
T Consensus        19 ~l~~a~~~~~p~~lRvN~~k~s~~~~~~~L~~~gi~~~~~-----~~~p~~l~l~~~~~l~~~~~~~~G~~~vQD~sS~-   92 (284)
T d1sqga2          19 SIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPH-----ADYPDAVRLETPAPVHALPGFEDGWVTVQDASAQ-   92 (284)
T ss_dssp             HHHHHHTSCCCEEEEECTTTCCHHHHHHHHHHTTCCEECC-----TTCTTEEEESSCCCGGGSTTGGGTSEEECCHHHH-
T ss_pred             HHHHHCCCCCCeEEEECCCCCCHHHHHHHHHhcCCceeec-----CCCCccceeccccchhhChhhhccEEEecccccc-
Confidence            4556666666777799998888999988888877321100     00111111111110    4677888888875544 


Q ss_pred             hHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830         117 PPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK  192 (364)
Q Consensus       117 ~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~  192 (364)
                         +++.   .|.  .++|.+|||+|+|+|..|..++..    .|+++|+++..+...++++++     ++..++.+...
T Consensus        93 ---l~~~---~L~--~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r-----~g~~~~~~~~~  159 (284)
T d1sqga2          93 ---GCMT---WLA--PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR-----LGMKATVKQGD  159 (284)
T ss_dssp             ---THHH---HHC--CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHH-----TTCCCEEEECC
T ss_pred             ---cccc---ccC--ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhc-----ccccceeeecc
Confidence               3333   333  689999999999999999998876    799999999999999999999     55566766665


Q ss_pred             CCCCCC-CCCCCeeEEEEccChHH----------------------------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         193 DARWGH-AEGGPYDVIFFGAGTTE----------------------------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       193 D~~~~~-~~~~~fD~Ii~~~~~~~----------------------------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      |..... .....||.|+++.+|..                            ++....+.|||||+||.++-+-
T Consensus       160 ~~~~~~~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~  233 (284)
T d1sqga2         160 GRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV  233 (284)
T ss_dssp             TTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             ccccchhcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence            543221 12357999999988832                            5678889999999999998664

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.29  E-value=4e-12  Score=115.86  Aligned_cols=98  Identities=18%  Similarity=0.109  Sum_probs=83.4

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      +++|.+|||+|||+|++++.+++.   +|+++|++|.+++.+++|++.|.   +. ++++++++|+..... .+.||.|+
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~---l~-~~v~~~~~D~~~~~~-~~~~D~Ii  179 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNK---VE-DRMSAYNMDNRDFPG-ENIADRIL  179 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTT---CT-TTEEEECSCTTTCCC-CSCEEEEE
T ss_pred             cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhC---CC-ceEEEEEcchHHhcc-CCCCCEEE
Confidence            689999999999999999998877   99999999999999999999854   32 469999999988765 46899999


Q ss_pred             EccCh--HHHHHHHHhccCCCcEEEEEE
Q psy7830         209 FGAGT--TEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       209 ~~~~~--~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ++.+.  ..+++.+.+.|++||.|.+..
T Consensus       180 ~~~p~~~~~~l~~a~~~l~~gG~lh~~~  207 (260)
T d2frna1         180 MGYVVRTHEFIPKALSIAKDGAIIHYHN  207 (260)
T ss_dssp             ECCCSSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             ECCCCchHHHHHHHHhhcCCCCEEEEEe
Confidence            98654  456778889999999986543

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.3e-12  Score=118.00  Aligned_cols=101  Identities=15%  Similarity=0.066  Sum_probs=75.4

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEE--EEcCCCC----
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEF--ILKDARW----  196 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~--~~~D~~~----  196 (364)
                      ++..+|||||||+|.++..+++.          .++++|+|+.|++.+++++....    ...++.+  ...++..    
T Consensus        39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  114 (280)
T d1jqea_          39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKIS----NLENVKFAWHKETSSEYQSR  114 (280)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCC----SCTTEEEEEECSCHHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcc----ccccccccchhhhhhhhcch
Confidence            34458999999999998877543          68999999999999999986611    1234544  3333321    


Q ss_pred             --CCCCCCCeeEEEEccChHH------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         197 --GHAEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       197 --~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                        ....+++||+|++...+++      +++++.++|+|||.|++.+...
T Consensus       115 ~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~  163 (280)
T d1jqea_         115 MLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG  163 (280)
T ss_dssp             HTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred             hcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecC
Confidence              1233578999999888865      6789999999999999887654

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.28  E-value=6.5e-12  Score=118.04  Aligned_cols=95  Identities=16%  Similarity=0.109  Sum_probs=77.8

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      ..+|++|||||||+|.++..+++.   +|+++|.++ ++..|+++...+.   . ..++.++.+|+.+...++++||+|+
T Consensus        36 ~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~---~-~~~i~~i~~~~~~l~~~~~~~D~i~  110 (328)
T d1g6q1_          36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNG---F-SDKITLLRGKLEDVHLPFPKVDIII  110 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTT---C-TTTEEEEESCTTTSCCSSSCEEEEE
T ss_pred             cCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhC---c-cccceEEEeehhhccCcccceeEEE
Confidence            357999999999999999999887   899999996 6678888877733   2 3589999999998876667899999


Q ss_pred             EccCh---------HHHHHHHHhccCCCcEEE
Q psy7830         209 FGAGT---------TEVSKTILSQLKPNGRIV  231 (364)
Q Consensus       209 ~~~~~---------~~l~~~l~~~LkpGG~Lv  231 (364)
                      +....         ..++....++|||||+++
T Consensus       111 se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         111 SEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             ECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            86443         236677789999999986

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.28  E-value=7.2e-12  Score=104.90  Aligned_cols=109  Identities=17%  Similarity=0.199  Sum_probs=83.6

Q ss_pred             HHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC-C
Q psy7830         124 CLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH-A  199 (364)
Q Consensus       124 ~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~-~  199 (364)
                      +..+|... -.|.+|||+|||+|.+++.++.+   +|+++|.++.+++.+++|++.+.   + .++++++++|+.... .
T Consensus         5 ~fn~l~~~-~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~---~-~~~~~ii~~D~~~~l~~   79 (152)
T d2esra1           5 IFNMIGPY-FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTK---A-ENRFTLLKMEAERAIDC   79 (152)
T ss_dssp             HHHHHCSC-CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTT---C-GGGEEEECSCHHHHHHH
T ss_pred             HHHHHHhh-CCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcc---c-ccchhhhcccccccccc
Confidence            44555532 36899999999999999887766   99999999999999999998832   1 246999999987642 2


Q ss_pred             CCCCeeEEEEccChHH-----HHHHHH--hccCCCcEEEEEEcCC
Q psy7830         200 EGGPYDVIFFGAGTTE-----VSKTIL--SQLKPNGRIVAPVGNV  237 (364)
Q Consensus       200 ~~~~fD~Ii~~~~~~~-----l~~~l~--~~LkpGG~Lvi~~~~~  237 (364)
                      ...+||+|+++.++..     .+..+.  +.|++||.+++.....
T Consensus        80 ~~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~~  124 (152)
T d2esra1          80 LTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKT  124 (152)
T ss_dssp             BCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             cccccceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEEeCCC
Confidence            2468999999988642     344443  4699999999876543

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=9.8e-12  Score=115.85  Aligned_cols=96  Identities=18%  Similarity=0.135  Sum_probs=75.6

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      ..+|++|||||||+|.++..+++.   +|+++|.++.+... +++...+.   . ..++.++.+|+.+......+||+|+
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a-~~~~~~~~---~-~~~i~~~~~~~~~l~~~~~~~D~Iv  107 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQA-MDIIRLNK---L-EDTITLIKGKIEEVHLPVEKVDVII  107 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHH-HHHHHHTT---C-TTTEEEEESCTTTSCCSCSCEEEEE
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHH-HHHHHHhC---C-CccceEEEeeHHHhcCccccceEEE
Confidence            457899999999999999999987   89999999988754 44444422   1 3689999999998776667999999


Q ss_pred             EccChH---------HHHHHHHhccCCCcEEEE
Q psy7830         209 FGAGTT---------EVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       209 ~~~~~~---------~l~~~l~~~LkpGG~Lvi  232 (364)
                      +....+         .+.....+.|||||+++-
T Consensus       108 se~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         108 SEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             ECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             EeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence            864432         345566789999999874

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.27  E-value=1e-11  Score=108.37  Aligned_cols=90  Identities=21%  Similarity=0.286  Sum_probs=70.3

Q ss_pred             CCccChHHHHHHHHHHHhcc-CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE
Q psy7830         112 QVVMEPPSYIARCLEQLVDH-LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL  187 (364)
Q Consensus       112 g~~~s~P~~~a~~l~~L~~~-l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v  187 (364)
                      ++..+.|.+.+.++..+... --.|++|||+|||+|.+++.++..   +|+++|+|+.+++.|++|+          .++
T Consensus        25 eQy~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~----------~~~   94 (197)
T d1ne2a_          25 EQYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC----------GGV   94 (197)
T ss_dssp             --CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC----------TTS
T ss_pred             ccCCCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc----------ccc
Confidence            45666677777766544421 136899999999999999888876   8999999999999999986          367


Q ss_pred             EEEEcCCCCCCCCCCCeeEEEEccChH
Q psy7830         188 EFILKDARWGHAEGGPYDVIFFGAGTT  214 (364)
Q Consensus       188 ~~~~~D~~~~~~~~~~fD~Ii~~~~~~  214 (364)
                      .++++|+...   .++||+|++|.++.
T Consensus        95 ~~~~~D~~~l---~~~fD~Vi~NPPfg  118 (197)
T d1ne2a_          95 NFMVADVSEI---SGKYDTWIMNPPFG  118 (197)
T ss_dssp             EEEECCGGGC---CCCEEEEEECCCC-
T ss_pred             cEEEEehhhc---CCcceEEEeCcccc
Confidence            8999998765   36899999998873

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.25  E-value=2e-11  Score=110.83  Aligned_cols=105  Identities=16%  Similarity=0.142  Sum_probs=83.7

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG  197 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~  197 (364)
                      ..+++.++  +....+|||||||+|.++..+++.    +++++|+ |++++.+++++....   + .+++.+..+|....
T Consensus        71 ~~~~~~~d--~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~---~-~~ri~~~~~d~~~~  143 (256)
T d1qzza2          71 EAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG---L-ADRVTVAEGDFFKP  143 (256)
T ss_dssp             HHHHHTSC--CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT---C-TTTEEEEECCTTSC
T ss_pred             HHHHhcCC--CccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcC---C-cceeeeeeeecccc
Confidence            44455443  567789999999999999999987    8999997 889999999887721   1 25799999998764


Q ss_pred             CCCCCCeeEEEEccChHH--------HHHHHHhccCCCcEEEEEEc
Q psy7830         198 HAEGGPYDVIFFGAGTTE--------VSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       198 ~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      .+  .+||+|++...+++        +++++++.|||||++++...
T Consensus       144 ~p--~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         144 LP--VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             CS--CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cc--ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence            32  46999998887763        67899999999999998653

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.24  E-value=3e-11  Score=105.80  Aligned_cols=92  Identities=14%  Similarity=0.142  Sum_probs=72.1

Q ss_pred             CccChHHHHHHHHHHHhcc-CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEE
Q psy7830         113 VVMEPPSYIARCLEQLVDH-LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLE  188 (364)
Q Consensus       113 ~~~s~P~~~a~~l~~L~~~-l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~  188 (364)
                      +..+.|.++..++...... -..|.+|||+|||+|.+++.++..   +|+++|+|+.+++.+++|+..+.      .+.+
T Consensus        24 qy~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~------~~~~   97 (201)
T d1wy7a1          24 QYRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFK------GKFK   97 (201)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGT------TSEE
T ss_pred             cCCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcC------CCce
Confidence            4455566666665443311 236889999999999999887776   89999999999999999998732      3788


Q ss_pred             EEEcCCCCCCCCCCCeeEEEEccCh
Q psy7830         189 FILKDARWGHAEGGPYDVIFFGAGT  213 (364)
Q Consensus       189 ~~~~D~~~~~~~~~~fD~Ii~~~~~  213 (364)
                      ++.+|....   .++||+|++|.++
T Consensus        98 ~~~~d~~~~---~~~fD~Vi~nPP~  119 (201)
T d1wy7a1          98 VFIGDVSEF---NSRVDIVIMNPPF  119 (201)
T ss_dssp             EEESCGGGC---CCCCSEEEECCCC
T ss_pred             EEECchhhh---CCcCcEEEEcCcc
Confidence            999998664   4679999999886

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.23  E-value=3.3e-11  Score=110.06  Aligned_cols=134  Identities=12%  Similarity=0.087  Sum_probs=100.4

Q ss_pred             ccccCCCceecCCCccChHHHHHHHHHHHhccC--CCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHH
Q psy7830         100 FGFCDIPYAFANQVVMEPPSYIARCLEQLVDHL--QNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNI  174 (364)
Q Consensus       100 ~~y~d~~l~ig~g~~~s~P~~~a~~l~~L~~~l--~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~  174 (364)
                      ..|....+.++.+..+++|.+ ..+++.+.++.  .+..+|+|+|||+|..+..+++.   +|+++|+|+.+++.|++|+
T Consensus        75 ~~F~~~~f~v~~~vlIPRpeT-E~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na  153 (271)
T d1nv8a_          75 KEFMGLSFLVEEGVFVPRPET-EELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNA  153 (271)
T ss_dssp             EEETTEEEECCTTSCCCCTTH-HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHH
T ss_pred             EEEeeeEEEEecCccCchhhh-hhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHH
Confidence            356666777888889999976 44444443222  34568999999999999888866   9999999999999999999


Q ss_pred             HhcCCCCCCCCCEEEEEcCCCCCCCC-CCCeeEEEEccChH--------------H------------HHHHHHhccCCC
Q psy7830         175 KISRPDLLQSKTLEFILKDARWGHAE-GGPYDVIFFGAGTT--------------E------------VSKTILSQLKPN  227 (364)
Q Consensus       175 ~~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD~Ii~~~~~~--------------~------------l~~~l~~~LkpG  227 (364)
                      +.+.   + ..++.+..+|....... .++||+|++|.++-              .            +-+-+.++|+||
T Consensus       154 ~~~~---~-~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~  229 (271)
T d1nv8a_         154 ERHG---V-SDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSG  229 (271)
T ss_dssp             HHTT---C-TTSEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTT
T ss_pred             HHcC---C-CceeEEeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCC
Confidence            9833   2 24688888888765432 36899999997741              0            123456789999


Q ss_pred             cEEEEEEcCCC
Q psy7830         228 GRIVAPVGNVW  238 (364)
Q Consensus       228 G~Lvi~~~~~~  238 (364)
                      |.+++.++...
T Consensus       230 G~l~~Eig~~Q  240 (271)
T d1nv8a_         230 KIVLMEIGEDQ  240 (271)
T ss_dssp             CEEEEECCTTC
T ss_pred             CEEEEEECHHH
Confidence            99999988654

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.22  E-value=1.8e-11  Score=114.35  Aligned_cols=96  Identities=20%  Similarity=0.174  Sum_probs=77.2

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      +.+|++|||||||+|.++..+++.   +|+++|.++.+ ..+++++..+.   + .+++.++.+|+.+.....++||+|+
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~n~---~-~~~v~~~~~~~~~~~~~~~~~D~iv  105 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKANK---L-DHVVTIIKGKVEEVELPVEKVDIII  105 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHHHTT---C-TTTEEEEESCTTTCCCSSSCEEEEE
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHHHhC---C-ccccceEeccHHHcccccceeEEEe
Confidence            347899999999999999999987   89999999864 66666666633   2 3579999999998776667899998


Q ss_pred             EccCh---------HHHHHHHHhccCCCcEEEE
Q psy7830         209 FGAGT---------TEVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       209 ~~~~~---------~~l~~~l~~~LkpGG~Lvi  232 (364)
                      +....         ..++..+.++|||||+++-
T Consensus       106 s~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         106 SEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             ECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            85443         3467788899999999873

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.20  E-value=4.4e-11  Score=111.01  Aligned_cols=119  Identities=13%  Similarity=0.065  Sum_probs=88.7

Q ss_pred             CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEE
Q psy7830         112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEF  189 (364)
Q Consensus       112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~  189 (364)
                      |-.+.+-..-..+.+.+.. ..++.+|||++||+|.+++.++..  +|++||.|+.+++.|++|++.|.   +...++++
T Consensus       111 G~f~dqr~nr~~~~~~~~~-~~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~---~~~~~~~~  186 (309)
T d2igta1         111 GVFPEQIVHWEWLKNAVET-ADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAG---LEQAPIRW  186 (309)
T ss_dssp             SCCGGGHHHHHHHHHHHHH-SSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHT---CTTSCEEE
T ss_pred             ccccchhHHHHHHHHHHhh-ccCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhc---ccCCcEEE
Confidence            3333333344444444442 467889999999999999999887  99999999999999999998865   44457999


Q ss_pred             EEcCCCCCCC----CCCCeeEEEEccCh----------------HHHHHHHHhccCCCcEEEEEE
Q psy7830         190 ILKDARWGHA----EGGPYDVIFFGAGT----------------TEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       190 ~~~D~~~~~~----~~~~fD~Ii~~~~~----------------~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      +++|+.....    ....||+|+++.+.                ..+...+..+|+|||.+++..
T Consensus       187 i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t  251 (309)
T d2igta1         187 ICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  251 (309)
T ss_dssp             ECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             EeCCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence            9999875432    24689999998663                124567788999999755544

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.18  E-value=2.5e-11  Score=116.84  Aligned_cols=115  Identities=17%  Similarity=0.214  Sum_probs=82.9

Q ss_pred             hHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHh-cC---CCCCCCCCEE
Q psy7830         117 PPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKI-SR---PDLLQSKTLE  188 (364)
Q Consensus       117 ~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~-~~---~~~l~~~~v~  188 (364)
                      .|.++..+++.+.  +++|++|||||||+|..+..+|..    +|+|||+++.+++.|+++++. +.   ........+.
T Consensus       201 ~~~~i~~Il~~l~--Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~  278 (406)
T d1u2za_         201 LPNFLSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVE  278 (406)
T ss_dssp             CHHHHHHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEE
T ss_pred             CHHHHHHHHHHhC--CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccce
Confidence            4668899999987  899999999999999999998876    799999999999999998764 10   0001112334


Q ss_pred             E-EEcCCCCCCC---CCCCeeEEEEccCh-----HHHHHHHHhccCCCcEEEEE
Q psy7830         189 F-ILKDARWGHA---EGGPYDVIFFGAGT-----TEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       189 ~-~~~D~~~~~~---~~~~fD~Ii~~~~~-----~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      + ..++......   ....+|+|+++..+     ...+.++.+.|||||++|..
T Consensus       279 ~~~~~~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         279 FSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             EEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             eeeeechhhccccccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEe
Confidence            3 2333332211   11357899887543     34678999999999999864

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=6.3e-11  Score=107.72  Aligned_cols=115  Identities=12%  Similarity=0.087  Sum_probs=77.6

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCC------------
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQS------------  184 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~------------  184 (364)
                      +...+.+.+......|.+|||+|||+|..+...+..   +|+++|+|+.|++.+++++..... ..+.            
T Consensus        40 ~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~-~~d~~~~~~~~~~~~~  118 (263)
T d2g72a1          40 KLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPG-AFNWSMYSQHACLIEG  118 (263)
T ss_dssp             HHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTT-CCCCHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcc-cccchhhhhhhhhhcc
Confidence            334444444433457889999999999887554433   899999999999999988754110 0000            


Q ss_pred             --------------CCEEEEEcCCCCCC------CCCCCeeEEEEccChHH----------HHHHHHhccCCCcEEEEEE
Q psy7830         185 --------------KTLEFILKDARWGH------AEGGPYDVIFFGAGTTE----------VSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       185 --------------~~v~~~~~D~~~~~------~~~~~fD~Ii~~~~~~~----------l~~~l~~~LkpGG~Lvi~~  234 (364)
                                    ....+...|+....      ...++||+|++...+++          +++++.++|||||.|++..
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~  198 (263)
T d2g72a1         119 KGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG  198 (263)
T ss_dssp             SCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence                          01234445654321      22357999999887765          3578899999999999865


Q ss_pred             c
Q psy7830         235 G  235 (364)
Q Consensus       235 ~  235 (364)
                      .
T Consensus       199 ~  199 (263)
T d2g72a1         199 A  199 (263)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=6.3e-11  Score=102.12  Aligned_cols=110  Identities=15%  Similarity=0.106  Sum_probs=85.0

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      +-..+..+|.. .-.+.+|||++||+|.+++.++.+   +|+.||.++.+++.+++|++.     ++..+++++..|+..
T Consensus        30 vre~lfn~l~~-~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~-----~~~~~~~ii~~d~~~  103 (183)
T d2fpoa1          30 VRETLFNWLAP-VIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLAT-----LKAGNARVVNSNAMS  103 (183)
T ss_dssp             HHHHHHHHHHH-HHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHH-----TTCCSEEEECSCHHH
T ss_pred             HHHHHHhhhhc-ccchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhh-----ccccceeeeeecccc
Confidence            33445555543 236789999999999999987776   899999999999999999988     335689999999875


Q ss_pred             CCC-CCCCeeEEEEccChH-----HHHHHHHh--ccCCCcEEEEEEc
Q psy7830         197 GHA-EGGPYDVIFFGAGTT-----EVSKTILS--QLKPNGRIVAPVG  235 (364)
Q Consensus       197 ~~~-~~~~fD~Ii~~~~~~-----~l~~~l~~--~LkpGG~Lvi~~~  235 (364)
                      ... ...+||+|+++.++.     .++..+.+  .|+++|.+++...
T Consensus       104 ~l~~~~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE~~  150 (183)
T d2fpoa1         104 FLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESE  150 (183)
T ss_dssp             HHSSCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             cccccccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEEec
Confidence            432 346899999998864     34455543  6999999998654

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.12  E-value=1.4e-10  Score=99.86  Aligned_cols=120  Identities=18%  Similarity=0.138  Sum_probs=90.3

Q ss_pred             CccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEE
Q psy7830         113 VVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEF  189 (364)
Q Consensus       113 ~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~  189 (364)
                      ..++.-.+-..+..+|.. ...|.+|||++||+|.+++.++.+   +|+++|.++.+++.+++|++...   . ..++++
T Consensus        21 ~RPt~~~vrealFn~l~~-~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~---~-~~~~~i   95 (182)
T d2fhpa1          21 TRPTTDKVKESIFNMIGP-YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITK---E-PEKFEV   95 (182)
T ss_dssp             SCCCCHHHHHHHHHHHCS-CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHT---C-GGGEEE
T ss_pred             cCcCcHHHHHHHHHHHHH-hcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhh---c-cccccc
Confidence            444443444555666653 457899999999999999988877   89999999999999999998722   1 247999


Q ss_pred             EEcCCCCCC----CCCCCeeEEEEccChH-----HHHHHHHh--ccCCCcEEEEEEcCC
Q psy7830         190 ILKDARWGH----AEGGPYDVIFFGAGTT-----EVSKTILS--QLKPNGRIVAPVGNV  237 (364)
Q Consensus       190 ~~~D~~~~~----~~~~~fD~Ii~~~~~~-----~l~~~l~~--~LkpGG~Lvi~~~~~  237 (364)
                      +++|+....    ....+||+|+++.++.     .++..+.+  .|+++|.+++.....
T Consensus        96 ~~~D~~~~l~~~~~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E~~~~  154 (182)
T d2fhpa1          96 RKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKT  154 (182)
T ss_dssp             EESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             ccccchhhhhhhcccCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEEcCCC
Confidence            999986532    2245799999998874     35566543  699999999876443

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.12  E-value=8.7e-11  Score=102.01  Aligned_cols=112  Identities=21%  Similarity=0.163  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830         118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD  193 (364)
Q Consensus       118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D  193 (364)
                      |-|...++++|.  ++++..+||++||+|..+..+++.    +|+|+|.|+.|++.|++++...     + .++.++.++
T Consensus         9 pVll~evi~~l~--~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~-----~-~r~~~~~~~   80 (192)
T d1m6ya2           9 PVMVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF-----S-DRVSLFKVS   80 (192)
T ss_dssp             CTTHHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG-----T-TTEEEEECC
T ss_pred             chHHHHHHHhhC--CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc-----c-ccccchhHH
Confidence            347888999997  789999999999999999988876    9999999999999999998772     1 489999998


Q ss_pred             CCCCC-----CCCCCeeEEEEccChH---------------HHHHHHHhccCCCcEEEEEEcCC
Q psy7830         194 ARWGH-----AEGGPYDVIFFGAGTT---------------EVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       194 ~~~~~-----~~~~~fD~Ii~~~~~~---------------~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ..+..     ...++||.|+.+..+.               ..+....++|+|||++++.....
T Consensus        81 f~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s  144 (192)
T d1m6ya2          81 YREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS  144 (192)
T ss_dssp             GGGHHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred             HhhHHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence            76431     1236899999886652               24678889999999999866543

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.4e-10  Score=102.67  Aligned_cols=107  Identities=22%  Similarity=0.255  Sum_probs=85.6

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      ..++..|.. .....+|||+|||+|+.+.+++..     +|+++|++++..+.|+++++...   + .++++++.+|+.+
T Consensus        48 g~lL~~L~~-~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag---~-~~~i~~~~Gda~e  122 (219)
T d2avda1          48 AQLLANLAR-LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE---A-EHKIDLRLKPALE  122 (219)
T ss_dssp             HHHHHHHHH-HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT---C-TTTEEEEESCHHH
T ss_pred             HHHHHHHHH-ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcC---c-cceEEEEEeehhh
Confidence            566666653 456779999999999999999976     99999999999999999998822   2 2579999999754


Q ss_pred             CC------CCCCCeeEEEEccChH---HHHHHHHhccCCCcEEEEE
Q psy7830         197 GH------AEGGPYDVIFFGAGTT---EVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       197 ~~------~~~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ..      ...++||+|+.+..-.   ...+.+.++|+|||.|++-
T Consensus       123 ~l~~~~~~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~D  168 (219)
T d2avda1         123 TLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVL  168 (219)
T ss_dssp             HHHHHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cchhhhhhcccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEe
Confidence            32      1246899999987654   3567888999999999973

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.04  E-value=3.6e-10  Score=99.68  Aligned_cols=106  Identities=13%  Similarity=0.168  Sum_probs=80.3

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      .+++..+.. .....+|||+|||+|+.++.++..     +|+++|+++.+++.|+++++...   + .++|+++.+|..+
T Consensus        45 G~lL~~lv~-~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~g---l-~~~i~l~~Gd~~e  119 (214)
T d2cl5a1          45 GQIMDAVIR-EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAG---L-QDKVTILNGASQD  119 (214)
T ss_dssp             HHHHHHHHH-HHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHT---C-GGGEEEEESCHHH
T ss_pred             HHHHHHHHH-hhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcC---C-Cccceeeeccccc
Confidence            444444443 334579999999999999999875     99999999999999999998822   2 2479999999865


Q ss_pred             CCC------CCCCeeEEEEccChHH-----HHHHHHhccCCCcEEEE
Q psy7830         197 GHA------EGGPYDVIFFGAGTTE-----VSKTILSQLKPNGRIVA  232 (364)
Q Consensus       197 ~~~------~~~~fD~Ii~~~~~~~-----l~~~l~~~LkpGG~Lvi  232 (364)
                      ..+      ..++||+|+.+..-..     .+.+..++|||||+|++
T Consensus       120 ~l~~l~~~~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         120 LIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             HGGGHHHHSCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             cccchhhcccccccceeeecccccccccHHHHHHHhCccCCCcEEEE
Confidence            422      2357999999865542     24456688999998775

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.2e-09  Score=98.54  Aligned_cols=104  Identities=12%  Similarity=0.040  Sum_probs=72.9

Q ss_pred             ceecCCCccChHHHHHHHHHHHhcc---C----CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHH
Q psy7830         107 YAFANQVVMEPPSYIARCLEQLVDH---L----QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIK  175 (364)
Q Consensus       107 l~ig~g~~~s~P~~~a~~l~~L~~~---l----~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~  175 (364)
                      +.+..+..+++|-+-.....++.+.   .    .+..+|||+|||+|..++.++..    +++|+|+++.+++.|++|++
T Consensus        27 ~~v~~~~LiPr~~~r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~  106 (250)
T d2h00a1          27 IDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVE  106 (250)
T ss_dssp             CCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH
T ss_pred             EEeCCCeecCCCCCHHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHH
Confidence            3444556666655433333333221   1    23458999999999999998887    99999999999999999999


Q ss_pred             hcCCCCCCCCCEEEEEcCCCCCCC------CCCCeeEEEEccChH
Q psy7830         176 ISRPDLLQSKTLEFILKDARWGHA------EGGPYDVIFFGAGTT  214 (364)
Q Consensus       176 ~~~~~~l~~~~v~~~~~D~~~~~~------~~~~fD~Ii~~~~~~  214 (364)
                      .+.   +. .++.++..+......      ..++||+|+||.++.
T Consensus       107 ~n~---l~-~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~  147 (250)
T d2h00a1         107 QNN---LS-DLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFF  147 (250)
T ss_dssp             HTT---CT-TTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC
T ss_pred             HhC---CC-cceeeeeeccHHhhhhhhhhcccCceeEEEecCccc
Confidence            844   32 468888765443221      235799999998874

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.96  E-value=6.1e-10  Score=99.01  Aligned_cols=107  Identities=23%  Similarity=0.271  Sum_probs=84.5

Q ss_pred             HHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         122 ARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       122 a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      ..++..|.. .....+|||+|+++|+.+..++..     +|+++|.+++..+.|++++++..   + .++++++.+|+.+
T Consensus        48 g~~L~~L~~-~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g---~-~~~i~~~~g~a~~  122 (227)
T d1susa1          48 GQFLSMLLK-LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG---V-DHKIDFREGPALP  122 (227)
T ss_dssp             HHHHHHHHH-HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT---C-GGGEEEEESCHHH
T ss_pred             HHHHHHHHH-hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhc---c-ccceeeeehHHHH
Confidence            455555543 345679999999999999999864     99999999999999999998822   2 2479999999865


Q ss_pred             CCC-------CCCCeeEEEEccChH---HHHHHHHhccCCCcEEEEE
Q psy7830         197 GHA-------EGGPYDVIFFGAGTT---EVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       197 ~~~-------~~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ...       ..++||+|+.+..-.   ..++.+.++|+|||.+++-
T Consensus       123 ~L~~l~~~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~D  169 (227)
T d1susa1         123 VLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYD  169 (227)
T ss_dssp             HHHHHHHCGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             HHHHHHhccccCCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEEc
Confidence            422       246899999987654   4567888999999999974

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.92  E-value=2e-09  Score=96.13  Aligned_cols=91  Identities=12%  Similarity=0.058  Sum_probs=74.8

Q ss_pred             ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830         116 EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD  193 (364)
Q Consensus       116 s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D  193 (364)
                      ..+.+..++++.+.  +.++++|||||||+|.+|..+++.  +|+++|+|+.+++.++++...       .+|++++.+|
T Consensus         5 ~d~~i~~~iv~~~~--~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~-------~~n~~i~~~D   75 (235)
T d1qama_           5 TSKHNIDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVD-------HDNFQVLNKD   75 (235)
T ss_dssp             CCHHHHHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTT-------CCSEEEECCC
T ss_pred             CCHHHHHHHHHhcC--CCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhc-------ccchhhhhhh
Confidence            34557777888776  689999999999999999999988  999999999999999987744       4699999999


Q ss_pred             CCCCCCCCCCeeEEEEccChHH
Q psy7830         194 ARWGHAEGGPYDVIFFGAGTTE  215 (364)
Q Consensus       194 ~~~~~~~~~~fD~Ii~~~~~~~  215 (364)
                      +............|++|.++.-
T Consensus        76 ~l~~~~~~~~~~~vv~NLPYnI   97 (235)
T d1qama_          76 ILQFKFPKNQSYKIFGNIPYNI   97 (235)
T ss_dssp             GGGCCCCSSCCCEEEEECCGGG
T ss_pred             hhhccccccccceeeeeehhhh
Confidence            9876543334457889998853

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.91  E-value=2.6e-09  Score=99.63  Aligned_cols=119  Identities=15%  Similarity=0.082  Sum_probs=87.1

Q ss_pred             CCccChHHHHHHHHHHHhcc--CCCCCEEEEECCCccHHHHHHHcc---------eEEEEeCCHHHHHHHHHHHHhcCCC
Q psy7830         112 QVVMEPPSYIARCLEQLVDH--LQNGSRVLDIGSGQGYMATAKEWL---------SSVRQLLLPETLNNSLKNIKISRPD  180 (364)
Q Consensus       112 g~~~s~P~~~a~~l~~L~~~--l~~g~~VLDiGcGsG~~a~~la~~---------~V~~vDis~~~l~~a~~~~~~~~~~  180 (364)
                      |+..+.+.++..|.+.+...  .+++.+|||.|||+|.+...+...         +++|+|+++.++..|+.++....  
T Consensus        93 g~~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~--  170 (328)
T d2f8la1          93 NHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR--  170 (328)
T ss_dssp             GGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT--
T ss_pred             CeEECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh--
Confidence            33444444444444444322  356789999999999999887542         79999999999999999887632  


Q ss_pred             CCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChHH------------------------HHHHHHhccCCCcEEEEEEcC
Q psy7830         181 LLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTTE------------------------VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       181 ~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~~------------------------l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                          .+..+..+|...... ..+||+|++|.++..                        ++..+.+.|++||++++.++.
T Consensus       171 ----~~~~~~~~d~~~~~~-~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~  245 (328)
T d2f8la1         171 ----QKMTLLHQDGLANLL-VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD  245 (328)
T ss_dssp             ----CCCEEEESCTTSCCC-CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred             ----hhhhhhccccccccc-cccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecC
Confidence                356677788655433 468999999988621                        467889999999999988876


Q ss_pred             C
Q psy7830         237 V  237 (364)
Q Consensus       237 ~  237 (364)
                      .
T Consensus       246 ~  246 (328)
T d2f8la1         246 A  246 (328)
T ss_dssp             G
T ss_pred             c
Confidence            4

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=1.2e-08  Score=96.22  Aligned_cols=111  Identities=20%  Similarity=0.261  Sum_probs=85.9

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG  197 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~  197 (364)
                      ++..+++++.  ..++.+|||+.||+|.++..+++.  +|+|+|+++.+++.|++|++.|.     ..|++++.+|....
T Consensus       200 l~~~v~~~~~--~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~-----i~n~~~~~~~~~~~  272 (358)
T d1uwva2         200 MVARALEWLD--VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNG-----LQNVTFYHENLEED  272 (358)
T ss_dssp             HHHHHHHHHT--CCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCTTSC
T ss_pred             HHHHHHHhhc--cCCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcc-----cccceeeecchhhh
Confidence            3344444444  467899999999999999999988  99999999999999999998844     57999999998764


Q ss_pred             CC----CCCCeeEEEEccChH---HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         198 HA----EGGPYDVIFFGAGTT---EVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       198 ~~----~~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      ..    ....||+|+.+.+-.   .....+.+ ++|.-++++|+.+..
T Consensus       273 ~~~~~~~~~~~d~vilDPPR~G~~~~~~~l~~-~~~~~ivYVSCnp~T  319 (358)
T d1uwva2         273 VTKQPWAKNGFDKVLLDPARAGAAGVMQQIIK-LEPIRIVYVSCNPAT  319 (358)
T ss_dssp             CSSSGGGTTCCSEEEECCCTTCCHHHHHHHHH-HCCSEEEEEESCHHH
T ss_pred             hhhhhhhhccCceEEeCCCCccHHHHHHHHHH-cCCCEEEEEeCCHHH
Confidence            32    135699999986653   44455544 378888888887654

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.79  E-value=1.6e-08  Score=86.60  Aligned_cols=114  Identities=18%  Similarity=0.095  Sum_probs=83.5

Q ss_pred             HHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         120 YIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       120 ~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      +-..+..+|... -.+.+|||+.||||.+++.++.+   +|+.||.+..+++..++|++...   +......+...|+..
T Consensus        30 vrealFn~l~~~-~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~---~~~~~~~~~~~d~~~  105 (183)
T d2ifta1          30 VKETLFNWLMPY-IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLK---CSSEQAEVINQSSLD  105 (183)
T ss_dssp             HHHHHHHHHHHH-HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTT---CCTTTEEEECSCHHH
T ss_pred             HHHHHHHHhhhh-cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhc---ccccccccccccccc
Confidence            334455555422 36889999999999999999887   99999999999999999998821   122356777777543


Q ss_pred             CC---CCCCCeeEEEEccChH-----HHHHHHH--hccCCCcEEEEEEcCC
Q psy7830         197 GH---AEGGPYDVIFFGAGTT-----EVSKTIL--SQLKPNGRIVAPVGNV  237 (364)
Q Consensus       197 ~~---~~~~~fD~Ii~~~~~~-----~l~~~l~--~~LkpGG~Lvi~~~~~  237 (364)
                      ..   ....+||+|+++.++.     .++..+.  ..|+++|.+++.....
T Consensus       106 ~l~~~~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE~~~~  156 (183)
T d2ifta1         106 FLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKD  156 (183)
T ss_dssp             HTTSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             cccccccCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEEEecCC
Confidence            22   2235799999999874     3455554  4799999999876543

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.76  E-value=1.3e-08  Score=92.96  Aligned_cols=107  Identities=20%  Similarity=0.163  Sum_probs=83.0

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCC-----CCCCCCCEEEEEcCCCCCCCCCCC
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRP-----DLLQSKTLEFILKDARWGHAEGGP  203 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~-----~~l~~~~v~~~~~D~~~~~~~~~~  203 (364)
                      .....+||.+|+|.|..+..+.+.   +|+.||+|+.+++.|++.+.....     .....++++++.+|+.......++
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~  149 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  149 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence            356689999999999999888877   899999999999999986532100     001246899999998765555678


Q ss_pred             eeEEEEccCh----------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         204 YDVIFFGAGT----------TEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       204 fD~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      ||+|+++..-          ....+.+.+.|+|||++++..++..
T Consensus       150 yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~  194 (276)
T d1mjfa_         150 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVY  194 (276)
T ss_dssp             EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred             CCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcc
Confidence            9999986543          2467899999999999998876543

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.76  E-value=3.6e-09  Score=98.30  Aligned_cols=105  Identities=18%  Similarity=0.226  Sum_probs=82.1

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC-CCCCeeEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA-EGGPYDVI  207 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~-~~~~fD~I  207 (364)
                      ....+||.||.|.|..+..+++.    +|++||+++.+++.+++.+..........++++++.+|+..... ...+||+|
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence            45679999999999999988776    89999999999999999875411111345789999999986543 24679999


Q ss_pred             EEccC--------h-----HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         208 FFGAG--------T-----TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       208 i~~~~--------~-----~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      +++..        .     ....+.+.+.|+|||++++..+..
T Consensus       156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~  198 (312)
T d1uira_         156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMI  198 (312)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEE
T ss_pred             EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCc
Confidence            97642        1     246789999999999999877543

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.72  E-value=3.8e-10  Score=101.51  Aligned_cols=91  Identities=18%  Similarity=0.175  Sum_probs=76.3

Q ss_pred             cChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc
Q psy7830         115 MEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK  192 (364)
Q Consensus       115 ~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~  192 (364)
                      +..+.++.++++.+.  +.+++.|||||||+|.+|..+++.  +|+++|+|+.+++.+++++..       .+|++++.+
T Consensus        12 L~d~~ii~kIv~~~~--~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~-------~~n~~ii~~   82 (245)
T d1yuba_          12 LTSEKVLNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL-------NTRVTLIHQ   82 (245)
T ss_dssp             CCCTTTHHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT-------CSEEEECCS
T ss_pred             cCCHHHHHHHHHhcC--CCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhh-------ccchhhhhh
Confidence            345557788898876  788999999999999999999988  999999999999888776533       358999999


Q ss_pred             CCCCCCCCCCCeeEEEEccChH
Q psy7830         193 DARWGHAEGGPYDVIFFGAGTT  214 (364)
Q Consensus       193 D~~~~~~~~~~fD~Ii~~~~~~  214 (364)
                      |+.........++.|++|.+++
T Consensus        83 D~l~~~~~~~~~~~vv~NLPY~  104 (245)
T d1yuba_          83 DILQFQFPNKQRYKIVGNIPYH  104 (245)
T ss_dssp             CCTTTTCCCSSEEEEEEECCSS
T ss_pred             hhhccccccceeeeEeeeeehh
Confidence            9988766556788899998875

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.71  E-value=1.4e-08  Score=93.35  Aligned_cols=105  Identities=17%  Similarity=0.172  Sum_probs=82.3

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC-CCCeeEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE-GGPYDVI  207 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD~I  207 (364)
                      ....+||-||.|.|..+..+++.    +|++||+|+.+++.+++.+..+. ..+..++++++.+|+...... .++||+|
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~-~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  166 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTS-CGFDDPRAEIVIANGAEYVRKFKNEFDVI  166 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHH-GGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhc-ccccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence            44579999999999999999876    89999999999999999765411 013457999999998765433 4679999


Q ss_pred             EEccChH-----------HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         208 FFGAGTT-----------EVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       208 i~~~~~~-----------~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      +++..-+           ...+.+.+.|+|||++++..+...
T Consensus       167 i~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~  208 (295)
T d1inla_         167 IIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPF  208 (295)
T ss_dssp             EEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred             EEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChh
Confidence            9875432           356899999999999999887653

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.70  E-value=7.5e-09  Score=90.34  Aligned_cols=105  Identities=24%  Similarity=0.265  Sum_probs=78.6

Q ss_pred             hHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q psy7830         117 PPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFIL  191 (364)
Q Consensus       117 ~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~  191 (364)
                      .+.++..|++.+.  ..++.+|||.|||+|.+...+.+.     .++|+|+++.++..+              .+..+..
T Consensus         4 P~~i~~~m~~l~~--~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~--------------~~~~~~~   67 (223)
T d2ih2a1           4 PPEVVDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------------PWAEGIL   67 (223)
T ss_dssp             CHHHHHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------------TTEEEEE
T ss_pred             CHHHHHHHHHhcC--CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc--------------ccceeee
Confidence            3556777888776  678999999999999998877654     799999998654321              2456777


Q ss_pred             cCCCCCCCCCCCeeEEEEccChH-----------------------------------HHHHHHHhccCCCcEEEEEEcC
Q psy7830         192 KDARWGHAEGGPYDVIFFGAGTT-----------------------------------EVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       192 ~D~~~~~~~~~~fD~Ii~~~~~~-----------------------------------~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      +|...... ...||+|++|.++.                                   .++....+.|++||++++.++.
T Consensus        68 ~~~~~~~~-~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~  146 (223)
T d2ih2a1          68 ADFLLWEP-GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA  146 (223)
T ss_dssp             SCGGGCCC-SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             eehhcccc-ccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence            88765543 46899999987741                                   1346778899999999998866


Q ss_pred             CC
Q psy7830         237 VW  238 (364)
Q Consensus       237 ~~  238 (364)
                      ..
T Consensus       147 ~~  148 (223)
T d2ih2a1         147 TW  148 (223)
T ss_dssp             GG
T ss_pred             ee
Confidence            53

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.70  E-value=2.7e-08  Score=96.10  Aligned_cols=120  Identities=15%  Similarity=0.114  Sum_probs=95.1

Q ss_pred             CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc-----------------eEEEEeCCHHHHHHHHHHH
Q psy7830         112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL-----------------SSVRQLLLPETLNNSLKNI  174 (364)
Q Consensus       112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~-----------------~V~~vDis~~~l~~a~~~~  174 (364)
                      |++.+...++..|++.+.  ..++.+|+|.+||+|.+...+.+.                 .++|+|+++.+...|+-|+
T Consensus       142 G~f~TP~~Iv~~mv~ll~--~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~  219 (425)
T d2okca1         142 GQYFTPRPLIQAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNL  219 (425)
T ss_dssp             GGGCCCHHHHHHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred             hhhccchhhhHhhheecc--CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhh
Confidence            677777888899999887  577899999999999999877653                 4999999999999999987


Q ss_pred             HhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEccChH-----------------------HHHHHHHhccCCCcEEE
Q psy7830         175 KISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGAGTT-----------------------EVSKTILSQLKPNGRIV  231 (364)
Q Consensus       175 ~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~~~~-----------------------~l~~~l~~~LkpGG~Lv  231 (364)
                      .-..   ....+..+...|...... ...||+|++|.++.                       ..+..+.+.|++||+++
T Consensus       220 ~l~g---~~~~~~~i~~~d~l~~~~-~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~  295 (425)
T d2okca1         220 YLHG---IGTDRSPIVCEDSLEKEP-STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAA  295 (425)
T ss_dssp             HHTT---CCSSCCSEEECCTTTSCC-SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred             hhcC---CccccceeecCchhhhhc-ccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEE
Confidence            6522   223355677788765443 46899999998872                       15678899999999999


Q ss_pred             EEEcCC
Q psy7830         232 APVGNV  237 (364)
Q Consensus       232 i~~~~~  237 (364)
                      +.++..
T Consensus       296 iI~p~~  301 (425)
T d2okca1         296 VVLPDN  301 (425)
T ss_dssp             EEEEHH
T ss_pred             EEechH
Confidence            888653

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.67  E-value=3.9e-08  Score=89.52  Aligned_cols=105  Identities=22%  Similarity=0.238  Sum_probs=84.2

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC-CCCeeEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE-GGPYDVI  207 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD~I  207 (364)
                      ....+||-+|.|.|..+..+.+.    +|+.+|+|+.+++.|++.+..+. ..+..++++++.+|+...... ..+||+|
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~-~~~~d~r~~i~~~D~~~~l~~~~~~yDvI  152 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIA-GKLDDPRVDVQVDDGFMHIAKSENQYDVI  152 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHH-TTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhc-ccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence            45679999999999999999876    99999999999999999875411 014457999999998765432 4689999


Q ss_pred             EEccCh----------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         208 FFGAGT----------TEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       208 i~~~~~----------~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      +++..-          ....+.+.+.|+|||+++...+...
T Consensus       153 i~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~  193 (274)
T d1iy9a_         153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPW  193 (274)
T ss_dssp             EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred             EEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCcc
Confidence            987543          3467899999999999998876643

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=6e-08  Score=88.70  Aligned_cols=105  Identities=20%  Similarity=0.163  Sum_probs=82.6

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC-CCCCeeEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA-EGGPYDVI  207 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~-~~~~fD~I  207 (364)
                      ....+||-+|.|.|..+..+.+.    +|+.+|+++.+++.|++.+..+.. ....++++++.+|+..... ..++||+|
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~-~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAI-GYSSSKLTLHVGDGFEFMKQNQDAFDVI  155 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHG-GGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhcc-ccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence            45579999999999999999886    999999999999999997653110 1335799999999876543 24689999


Q ss_pred             EEccChH----------HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         208 FFGAGTT----------EVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       208 i~~~~~~----------~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      +++..-.          ...+.+.+.|+|||++++..+...
T Consensus       156 i~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~  196 (285)
T d2o07a1         156 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQW  196 (285)
T ss_dssp             EEECC-----------CHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             EEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchh
Confidence            9875432          356889999999999999886654

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.58  E-value=1.1e-07  Score=87.27  Aligned_cols=105  Identities=15%  Similarity=0.209  Sum_probs=83.1

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC--CCCCeeE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA--EGGPYDV  206 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~--~~~~fD~  206 (364)
                      ....+||-+|.|.|..+..+.+.    +|+.||+|+.+++.+++.+..+. .....++++++.+|+.....  ..++||+
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~-~~~~~~r~~i~~~Da~~~l~~~~~~~yDv  157 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVA-IGYEDPRVNLVIGDGVAFLKNAAEGSYDA  157 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH-GGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhh-ccccCCCcEEEEccHHHHHhhccccCccE
Confidence            45579999999999999999887    89999999999999999764310 00335799999999876542  2358999


Q ss_pred             EEEccCh----------HHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         207 IFFGAGT----------TEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       207 Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      |+++..-          ....+.+.+.|+|||++++..+...
T Consensus       158 Ii~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~  199 (290)
T d1xj5a_         158 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLW  199 (290)
T ss_dssp             EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred             EEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcH
Confidence            9987543          2467899999999999999887654

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.57  E-value=3.9e-08  Score=90.84  Aligned_cols=105  Identities=17%  Similarity=0.142  Sum_probs=82.7

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCC-CCCCeeEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHA-EGGPYDVI  207 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~-~~~~fD~I  207 (364)
                      ....+||-+|.|.|..+..+.+.    +|+.||+|+.+++.+++.+..+. ..+..++++++.+|+..... ...+||+|
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~-~~~~dprv~i~i~Da~~~l~~~~~~yDvI  183 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMS-CGFSHPKLDLFCGDGFEFLKNHKNEFDVI  183 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTS-GGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhc-cccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence            45679999999999999999886    89999999999999999775421 11345799999999876543 24679999


Q ss_pred             EEccChH----------HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         208 FFGAGTT----------EVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       208 i~~~~~~----------~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      +++..-.          ...+.+.+.|+|||+++...+...
T Consensus       184 I~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~  224 (312)
T d2b2ca1         184 ITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVW  224 (312)
T ss_dssp             EECCC-------------HHHHHHHHEEEEEEEEEECCCTT
T ss_pred             EEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChH
Confidence            9875432          256789999999999999876654

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=2.8e-07  Score=80.25  Aligned_cols=99  Identities=16%  Similarity=0.117  Sum_probs=83.9

Q ss_pred             CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF  209 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~  209 (364)
                      ++.+|+|+|||.|.-++.+|-.    +++.+|.+...+...++-...     ++..|+++++..+++... ..+||+|++
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~-----L~L~nv~v~~~R~E~~~~-~~~fD~V~s  138 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHE-----LKLENIEPVQSRVEEFPS-EPPFDGVIS  138 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH-----TTCSSEEEEECCTTTSCC-CSCEEEEEC
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHH-----cCCcceeeeccchhhhcc-ccccceehh
Confidence            4679999999999988887754    999999999999999988877     666899999999887654 468999997


Q ss_pred             ccC--hHHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         210 GAG--TTEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       210 ~~~--~~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      -+.  ...+++.....+++||++++.-+...
T Consensus       139 RA~~~~~~ll~~~~~~l~~~g~~~~~KG~~~  169 (207)
T d1jsxa_         139 RAFASLNDMVSWCHHLPGEQGRFYALKGQMP  169 (207)
T ss_dssp             SCSSSHHHHHHHHTTSEEEEEEEEEEESSCC
T ss_pred             hhhcCHHHHHHHHHHhcCCCcEEEEECCCCH
Confidence            654  45788899999999999999887654

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.57  E-value=7.9e-08  Score=82.18  Aligned_cols=108  Identities=17%  Similarity=0.087  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         119 SYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       119 ~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      -+...+++.|.  +++|+.++|..+|.|+.+..+++.  +|+|+|.++.+++.+++..         .+++.++..+...
T Consensus         5 Vll~Evl~~l~--~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~~---------~~~~~~~~~~f~~   73 (182)
T d1wg8a2           5 VLYQEALDLLA--VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLH---------LPGLTVVQGNFRH   73 (182)
T ss_dssp             TTHHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTC---------CTTEEEEESCGGG
T ss_pred             hHHHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhcc---------ccceeEeehHHHH
Confidence            37788899987  789999999999999999998888  9999999999999887642         3589999988654


Q ss_pred             CC-----CCCCCeeEEEEccChHH---------------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         197 GH-----AEGGPYDVIFFGAGTTE---------------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       197 ~~-----~~~~~fD~Ii~~~~~~~---------------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      ..     ...+.+|.|+++..+..               .+....+.|++||++++.....
T Consensus        74 ~~~~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs  134 (182)
T d1wg8a2          74 LKRHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS  134 (182)
T ss_dssp             HHHHHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred             HHHHHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence            32     12357999999876532               4577788999999999877543

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=4.5e-07  Score=82.34  Aligned_cols=92  Identities=17%  Similarity=0.172  Sum_probs=76.0

Q ss_pred             ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830         116 EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD  193 (364)
Q Consensus       116 s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D  193 (364)
                      ..+.+..++++.+.  +.+++.|||||+|+|.+|..+++.  +|+++|+|+.+++..++++....    ...+++++.+|
T Consensus         5 ~d~~i~~kIv~~~~--~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~----~~~~~~~i~~D   78 (278)
T d1zq9a1           5 KNPLIINSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTP----VASKLQVLVGD   78 (278)
T ss_dssp             CCHHHHHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTST----TGGGEEEEESC
T ss_pred             CCHHHHHHHHHHhC--CCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhc----cccchhhhHHH
Confidence            45678888888876  678999999999999999999987  99999999999999999876521    12589999999


Q ss_pred             CCCCCCCCCCeeEEEEccChHH
Q psy7830         194 ARWGHAEGGPYDVIFFGAGTTE  215 (364)
Q Consensus       194 ~~~~~~~~~~fD~Ii~~~~~~~  215 (364)
                      +.....  ..++.|++|.++.-
T Consensus        79 ~l~~~~--~~~~~vV~NLPY~I   98 (278)
T d1zq9a1          79 VLKTDL--PFFDTCVANLPYQI   98 (278)
T ss_dssp             TTTSCC--CCCSEEEEECCGGG
T ss_pred             Hhhhhh--hhhhhhhcchHHHH
Confidence            987643  34678999999863

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.53  E-value=3.2e-07  Score=78.89  Aligned_cols=102  Identities=18%  Similarity=0.175  Sum_probs=66.7

Q ss_pred             CCCCEEEEECCCccHHH----HHHHcc--------eEEEEeCCHHHHHHHHHHHH------------------hcCCCCC
Q psy7830         133 QNGSRVLDIGSGQGYMA----TAKEWL--------SSVRQLLLPETLNNSLKNIK------------------ISRPDLL  182 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a----~~la~~--------~V~~vDis~~~l~~a~~~~~------------------~~~~~~l  182 (364)
                      .+..+|+++|||+|--.    +.+...        +|+|+|+|+.+++.|++..-                  .......
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            34569999999999743    333321        79999999999999985221                  0000000


Q ss_pred             C--------CCCEEEEEcCCCCCC-CCCCCeeEEEEccChH--------HHHHHHHhccCCCcEEEEEE
Q psy7830         183 Q--------SKTLEFILKDARWGH-AEGGPYDVIFFGAGTT--------EVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       183 ~--------~~~v~~~~~D~~~~~-~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      +        ...+.+...+..... ...++||+|+|-.++.        .+++.+.+.|+|||.|++..
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~  171 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH  171 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence            0        012455555554332 2246899999987774        47889999999999988643

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.44  E-value=2.3e-07  Score=82.88  Aligned_cols=87  Identities=17%  Similarity=0.177  Sum_probs=67.9

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      ....+|||||||+|.++..+++.    +++..|+ |..++       ..    ...++++++.+|..+..   ...|+++
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~----~~~~ri~~~~gd~~~~~---p~~D~~~  144 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIE-------NA----PPLSGIEHVGGDMFASV---PQGDAMI  144 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TC----CCCTTEEEEECCTTTCC---CCEEEEE
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhh-------cc----CCCCCeEEecCCccccc---ccceEEE
Confidence            45579999999999999999887    8899997 34332       10    12368999999987543   2469998


Q ss_pred             EccChHH--------HHHHHHhccCCCcEEEEEE
Q psy7830         209 FGAGTTE--------VSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       209 ~~~~~~~--------l~~~l~~~LkpGG~Lvi~~  234 (364)
                      +...++.        +++++++.|+|||+|++..
T Consensus       145 l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e  178 (244)
T d1fp1d2         145 LKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE  178 (244)
T ss_dssp             EESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            8777753        7899999999999999865

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=1.4e-07  Score=84.64  Aligned_cols=91  Identities=13%  Similarity=0.011  Sum_probs=72.6

Q ss_pred             ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC
Q psy7830         116 EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD  193 (364)
Q Consensus       116 s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D  193 (364)
                      ..+.++.++++.+.  +.+++.|||||||+|.+|..+++.  +|+++|+|+.+++..+++...       .++++++.+|
T Consensus         5 ~d~~~~~~Iv~~~~--~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~-------~~~~~ii~~D   75 (252)
T d1qyra_           5 NDQFVIDSIVSAIN--PQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFL-------GPKLTIYQQD   75 (252)
T ss_dssp             CCHHHHHHHHHHHC--CCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTT-------GGGEEEECSC
T ss_pred             CCHHHHHHHHHhcC--CCCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhh-------ccchhHHhhh
Confidence            45668888999886  688999999999999999999988  999999999999998875433       3589999999


Q ss_pred             CCCCCCCC-----CCeeEEEEccChHH
Q psy7830         194 ARWGHAEG-----GPYDVIFFGAGTTE  215 (364)
Q Consensus       194 ~~~~~~~~-----~~fD~Ii~~~~~~~  215 (364)
                      +.......     +.--.|++|.++.-
T Consensus        76 ~l~~~~~~~~~~~~~~~~vvgNlPY~I  102 (252)
T d1qyra_          76 AMTFNFGELAEKMGQPLRVFGNLPYNI  102 (252)
T ss_dssp             GGGCCHHHHHHHHTSCEEEEEECCTTT
T ss_pred             hhhhcccccccccCCCeEEEecchHHH
Confidence            98653211     12237889988753

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=8.2e-07  Score=87.75  Aligned_cols=121  Identities=16%  Similarity=0.132  Sum_probs=87.7

Q ss_pred             CCccChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc----------------------eEEEEeCCHHHHHH
Q psy7830         112 QVVMEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL----------------------SSVRQLLLPETLNN  169 (364)
Q Consensus       112 g~~~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~----------------------~V~~vDis~~~l~~  169 (364)
                      |++-+...++..|++.+.  ..++.+|+|.+||+|.+...+.+.                      .++|+|+++.+...
T Consensus       144 GqfyTP~~Iv~~mv~ll~--~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~l  221 (524)
T d2ar0a1         144 GQYFTPRPLIKTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL  221 (524)
T ss_dssp             -CCCCCHHHHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHH
T ss_pred             chhccccchhHhhhhccc--CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHH
Confidence            677777888888888887  578899999999999998766442                      58999999999999


Q ss_pred             HHHHHHhcCCCCCCC---CCEEEEEcCCCCC-CCCCCCeeEEEEccChHH--------------------HHHHHHhccC
Q psy7830         170 SLKNIKISRPDLLQS---KTLEFILKDARWG-HAEGGPYDVIFFGAGTTE--------------------VSKTILSQLK  225 (364)
Q Consensus       170 a~~~~~~~~~~~l~~---~~v~~~~~D~~~~-~~~~~~fD~Ii~~~~~~~--------------------l~~~l~~~Lk  225 (364)
                      |+-|+--..   ...   ..-.+..++.... .....+||+|++|.++..                    .+..+.+.|+
T Consensus       222 a~~nl~l~~---~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk  298 (524)
T d2ar0a1         222 ALMNCLLHD---IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLH  298 (524)
T ss_dssp             HHHHHHTTT---CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEE
T ss_pred             HHHHHHhhc---ccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhcc
Confidence            998875421   100   0112334443321 112357999999998731                    5688999999


Q ss_pred             CCcEEEEEEcCC
Q psy7830         226 PNGRIVAPVGNV  237 (364)
Q Consensus       226 pGG~Lvi~~~~~  237 (364)
                      +||++++.++..
T Consensus       299 ~gGr~aiIlP~~  310 (524)
T d2ar0a1         299 PGGRAAVVVPDN  310 (524)
T ss_dssp             EEEEEEEEEEHH
T ss_pred             ccCcEEEEEehH
Confidence            999999988653

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.22  E-value=7.5e-07  Score=79.41  Aligned_cols=87  Identities=15%  Similarity=0.140  Sum_probs=66.8

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      ....+|||||||+|..+..+++.    +++..|. |+.++.+.           ..++++++.+|..+..   ..+|+++
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~-----------~~~rv~~~~gD~f~~~---p~aD~~~  143 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS-----------GSNNLTYVGGDMFTSI---PNADAVL  143 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-----------CBTTEEEEECCTTTCC---CCCSEEE
T ss_pred             cCceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCc-----------ccCceEEEecCcccCC---CCCcEEE
Confidence            34578999999999999999887    9999998 44433221           1358999999987643   3579999


Q ss_pred             EccChHH--------HHHHHHhccCCC---cEEEEEE
Q psy7830         209 FGAGTTE--------VSKTILSQLKPN---GRIVAPV  234 (364)
Q Consensus       209 ~~~~~~~--------l~~~l~~~LkpG---G~Lvi~~  234 (364)
                      +...+++        +++++++.|+||   |++++..
T Consensus       144 l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e  180 (244)
T d1fp2a2         144 LKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIID  180 (244)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             EEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEE
Confidence            8877763        789999999998   6666644

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.21  E-value=1.7e-06  Score=76.69  Aligned_cols=100  Identities=20%  Similarity=0.141  Sum_probs=82.1

Q ss_pred             CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC---CCCeeE
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE---GGPYDV  206 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~---~~~fD~  206 (364)
                      .+.+|+|+|+|.|.-++.++-.    +++.+|.+...+...+.-...     ++..|+.++...++.....   .++||+
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~-----L~L~n~~i~~~R~E~~~~~~~~~~~~D~  144 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEA-----LQLENTTFCHDRAETFGQRKDVRESYDI  144 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH-----HTCSSEEEEESCHHHHTTCTTTTTCEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHH-----hCCCCcEEEeehhhhccccccccccceE
Confidence            5679999999999988887764    999999999999999887777     5668999999887654321   357999


Q ss_pred             EEEccC--hHHHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         207 IFFGAG--TTEVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       207 Ii~~~~--~~~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      |++-+.  +..++......+++||++++.-+...
T Consensus       145 v~sRAva~l~~ll~~~~~~l~~~g~~i~~KG~~~  178 (239)
T d1xdza_         145 VTARAVARLSVLSELCLPLVKKNGLFVALKAASA  178 (239)
T ss_dssp             EEEECCSCHHHHHHHHGGGEEEEEEEEEEECC-C
T ss_pred             EEEhhhhCHHHHHHHHhhhcccCCEEEEECCCCh
Confidence            998654  46788999999999999999888765

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.16  E-value=1.6e-06  Score=73.72  Aligned_cols=91  Identities=19%  Similarity=0.172  Sum_probs=69.7

Q ss_pred             cCCCCCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC-------
Q psy7830         131 HLQNGSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH-------  198 (364)
Q Consensus       131 ~l~~g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~-------  198 (364)
                      .++++.+|||+||++|.++..+.+.     .|+++|+.+-         .       ..+++.++.+|.....       
T Consensus        19 l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---------~-------~i~~~~~~~~d~~~~~~~~~~~~   82 (180)
T d1ej0a_          19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------D-------PIVGVDFLQGDFRDELVMKALLE   82 (180)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------C-------CCTTEEEEESCTTSHHHHHHHHH
T ss_pred             ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---------c-------ccCCceEeecccccchhhhhhhh
Confidence            3689999999999999999988875     8999998652         1       1358899999986422       


Q ss_pred             -CCCCCeeEEEEccChH--------H---------HHHHHHhccCCCcEEEEEEcCC
Q psy7830         199 -AEGGPYDVIFFGAGTT--------E---------VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       199 -~~~~~fD~Ii~~~~~~--------~---------l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                       ....++|+|+++.+..        +         .+.-+.+.|++||.+|+-+-..
T Consensus        83 ~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g  139 (180)
T d1ej0a_          83 RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG  139 (180)
T ss_dssp             HHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred             hccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecC
Confidence             1235799999987742        1         2356778999999999987654

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.04  E-value=3.9e-06  Score=74.08  Aligned_cols=108  Identities=11%  Similarity=0.000  Sum_probs=71.8

Q ss_pred             cChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC
Q psy7830         115 MEPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--------SSVRQLLLPETLNNSLKNIKISRPDLLQSKT  186 (364)
Q Consensus       115 ~s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~  186 (364)
                      +..|.-+...-+.+.+ ++ ..+|||+|++.|+.+..++..        +|+++|+++.......          ...++
T Consensus        63 ~k~p~d~~~~~eli~~-~K-Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~----------~~~~~  130 (232)
T d2bm8a1          63 LKDPDTQAVYHDMLWE-LR-PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA----------SDMEN  130 (232)
T ss_dssp             CSCHHHHHHHHHHHHH-HC-CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG----------GGCTT
T ss_pred             ccCHHHHHHHHHHHHH-hC-CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh----------ccccc
Confidence            3456666666666653 34 568999999999988776632        8999999875432211          11368


Q ss_pred             EEEEEcCCCCCCC----CCCCeeEEEEccCh--HHHHH--HHHhccCCCcEEEEEE
Q psy7830         187 LEFILKDARWGHA----EGGPYDVIFFGAGT--TEVSK--TILSQLKPNGRIVAPV  234 (364)
Q Consensus       187 v~~~~~D~~~~~~----~~~~fD~Ii~~~~~--~~l~~--~l~~~LkpGG~Lvi~~  234 (364)
                      ++++.+|......    ....+|.|+.+..-  .+...  .+...|++||++++--
T Consensus       131 I~~i~gDs~~~~~~~~l~~~~~dlIfID~~H~~~~v~~~~~~~~lLk~GG~iIveD  186 (232)
T d2bm8a1         131 ITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIED  186 (232)
T ss_dssp             EEEEECCSSCSGGGGGGSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred             eeeeecccccHHHHHHHHhcCCCEEEEcCCcchHHHHHHHHHhcccCcCCEEEEEc
Confidence            9999999764321    13468988887552  12221  3558999999998743

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.00  E-value=6.1e-06  Score=77.87  Aligned_cols=104  Identities=19%  Similarity=0.066  Sum_probs=77.8

Q ss_pred             CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCC-C---------CCCCCEEEEEcCCCCCCC
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPD-L---------LQSKTLEFILKDARWGHA  199 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~-~---------l~~~~v~~~~~D~~~~~~  199 (364)
                      .+.+|||..||+|..++..+..    +|++.|+|+.+++.+++|++.|... .         .+..++.+...|+.....
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            5779999999999999976653    9999999999999999999875410 0         011246677777654332


Q ss_pred             C-CCCeeEEEEccCh--HHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         200 E-GGPYDVIFFGAGT--TEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       200 ~-~~~fD~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      . ...||+|..+.--  ...++...+.++.||.|.++..+.
T Consensus       125 ~~~~~fDvIDiDPfGs~~pfldsAi~a~~~~Gll~vTaTD~  165 (375)
T d2dula1         125 ERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTATDG  165 (375)
T ss_dssp             HSTTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEECCH
T ss_pred             hhcCcCCcccCCCCCCcHHHHHHHHHHhccCCEEEEEecCc
Confidence            2 3579999987532  346788888899999999988653

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.00  E-value=1.7e-06  Score=76.92  Aligned_cols=87  Identities=15%  Similarity=0.164  Sum_probs=64.0

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      ....+|||||||+|..+..+++.    +++.+|+.+. ++.+           ...+++++..+|..+..+   ..|.++
T Consensus        80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~-----------~~~~r~~~~~~d~~~~~P---~ad~~~  144 (243)
T d1kyza2          80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDA-----------PSYPGVEHVGGDMFVSIP---KADAVF  144 (243)
T ss_dssp             SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTC-----------CCCTTEEEEECCTTTCCC---CCSCEE
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhc-----------ccCCceEEecccccccCC---CcceEE
Confidence            34578999999999999999987    9999998643 2111           113589999999876443   235555


Q ss_pred             EccChH--------HHHHHHHhccCCCcEEEEEE
Q psy7830         209 FGAGTT--------EVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       209 ~~~~~~--------~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ....++        .+++++++.|+|||++++..
T Consensus       145 l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d  178 (243)
T d1kyza2         145 MKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAE  178 (243)
T ss_dssp             CSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred             EEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEE
Confidence            444432        47899999999999988764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.68  E-value=0.00016  Score=59.62  Aligned_cols=92  Identities=18%  Similarity=0.202  Sum_probs=66.0

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC---------
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH---------  198 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~---------  198 (364)
                      +++|++||-+|||+ |.++..+++.   +|+++|.++..++.+++.-         . ...+...+.....         
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~g---------a-~~~~~~~~~~~~~~~~~~~~~~   93 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCG---------A-DVTLVVDPAKEEESSIIERIRS   93 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT---------C-SEEEECCTTTSCHHHHHHHHHH
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcC---------C-cEEEeccccccccchhhhhhhc
Confidence            78999999999985 6666667766   9999999999999988732         1 2222221111100         


Q ss_pred             CCCCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         199 AEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       199 ~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      .....+|+|+-.......++...+.++++|++++.
T Consensus        94 ~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~  128 (170)
T d1e3ja2          94 AIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLV  128 (170)
T ss_dssp             HSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEEC
T ss_pred             ccccCCceeeecCCChHHHHHHHHHHhcCCceEEE
Confidence            01246899998777778888899999999998864

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.65  E-value=2.7e-05  Score=68.69  Aligned_cols=110  Identities=13%  Similarity=0.000  Sum_probs=68.2

Q ss_pred             HHHHHHHhc-cCCCCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         122 ARCLEQLVD-HLQNGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       122 a~~l~~L~~-~l~~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      .++.+.... +++++.+|+|+|||+|+.+..++..    .|.|+++--...+.  .....    .++.+-+++...+...
T Consensus        53 ~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~--P~~~~----~~~~ni~~~~~~~dv~  126 (257)
T d2p41a1          53 AKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE--PIPMS----TYGWNLVRLQSGVDVF  126 (257)
T ss_dssp             HHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC--CCCCC----STTGGGEEEECSCCTT
T ss_pred             HHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC--Ccccc----ccccccccchhhhhHH
Confidence            344443332 3578899999999999999999876    67777773211000  00000    0111234555544322


Q ss_pred             CCCCCCCeeEEEEccCh-------H-----HHHHHHHhccCCCcEEEEEEcCCC
Q psy7830         197 GHAEGGPYDVIFFGAGT-------T-----EVSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       197 ~~~~~~~fD~Ii~~~~~-------~-----~l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      .. .....|+|+|+..-       +     .+++.+.+.|+|||.+++-+..++
T Consensus       127 ~l-~~~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py  179 (257)
T d2p41a1         127 FI-PPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPY  179 (257)
T ss_dssp             TS-CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCC
T ss_pred             hc-CCCcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCC
Confidence            22 24689999998742       1     256777789999999999887755

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.57  E-value=7.7e-05  Score=62.35  Aligned_cols=91  Identities=21%  Similarity=0.241  Sum_probs=66.8

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC------CCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG------HAE  200 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~------~~~  200 (364)
                      +++|++||-+|||. |..+..+++.    +|+++|.++..++.+++.         +..  .++...-...      ...
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l---------Ga~--~~i~~~~~~~~~~v~~~t~   93 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY---------GAT--DILNYKNGHIEDQVMKLTN   93 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH---------TCS--EEECGGGSCHHHHHHHHTT
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh---------Ccc--ccccccchhHHHHHHHHhh
Confidence            89999999999997 7788888877    799999999999988762         211  1221111110      011


Q ss_pred             CCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         201 GGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ...+|+|+-.......++...+.++|+|++++.
T Consensus        94 g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~  126 (174)
T d1jqba2          94 GKGVDRVIMAGGGSETLSQAVKMVKPGGIISNI  126 (174)
T ss_dssp             TSCEEEEEECSSCTTHHHHHHHHEEEEEEEEEC
T ss_pred             ccCcceEEEccCCHHHHHHHHHHHhcCCEEEEE
Confidence            245999998877777788889999999999874

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00018  Score=59.52  Aligned_cols=98  Identities=13%  Similarity=0.057  Sum_probs=67.9

Q ss_pred             HHHHHhccCCCCCEEEEECCCcc-HHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC
Q psy7830         124 CLEQLVDHLQNGSRVLDIGSGQG-YMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH  198 (364)
Q Consensus       124 ~l~~L~~~l~~g~~VLDiGcGsG-~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~  198 (364)
                      .++...  +++|++||-+|||+. .++..+++.    +|+++|.++..++.|++.         +.+.+  +..+-....
T Consensus        18 a~~~~~--~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~---------Ga~~~--~~~~~~~~~   84 (171)
T d1pl8a2          18 ACRRGG--VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI---------GADLV--LQISKESPQ   84 (171)
T ss_dssp             HHHHHT--CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---------TCSEE--EECSSCCHH
T ss_pred             HHHHhC--CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh---------CCccc--ccccccccc
Confidence            444443  789999999999874 444555554    799999999999988762         22211  221111100


Q ss_pred             --------CCCCCeeEEEEccChHHHHHHHHhccCCCcEEEEEE
Q psy7830         199 --------AEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       199 --------~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                              .....+|+|+-....+..++...+.+++||++++.-
T Consensus        85 ~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G  128 (171)
T d1pl8a2          85 EIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVG  128 (171)
T ss_dssp             HHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECS
T ss_pred             cccccccccCCCCceEEEeccCCchhHHHHHHHhcCCCEEEEEe
Confidence                    012468999988888888999999999999998743

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.47  E-value=9.9e-05  Score=61.81  Aligned_cols=92  Identities=15%  Similarity=0.115  Sum_probs=64.7

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCC--CC------C
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDAR--WG------H  198 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~--~~------~  198 (364)
                      +++|++||-+|||+ |.++..+++.    +|+++|.+++.++.+++.         +. ...+...+..  +.      .
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l---------Ga-~~vi~~~~~~~~~~~~~i~~~   95 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI---------GA-DLTLNRRETSVEERRKAIMDI   95 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT---------TC-SEEEETTTSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCccchhheecccccccccccccccccccccccccc---------cc-eEEEeccccchHHHHHHHHHh
Confidence            67899999999985 6777777776    799999999999988752         21 1111111110  00      0


Q ss_pred             CCCCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         199 AEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       199 ~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      .....+|+|+-.......++...+.|++||++++.
T Consensus        96 ~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~  130 (182)
T d1vj0a2          96 THGRGADFILEATGDSRALLEGSELLRRGGFYSVA  130 (182)
T ss_dssp             TTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEEC
T ss_pred             hCCCCceEEeecCCchhHHHHHHHHhcCCCEEEEE
Confidence            11246999997776667788889999999998764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.42  E-value=3.3e-05  Score=64.09  Aligned_cols=92  Identities=17%  Similarity=0.085  Sum_probs=61.4

Q ss_pred             CCCCCEEEEECCC-ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC-CCCCCCeeE
Q psy7830         132 LQNGSRVLDIGSG-QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG-HAEGGPYDV  206 (364)
Q Consensus       132 l~~g~~VLDiGcG-sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~-~~~~~~fD~  206 (364)
                      +++|++||-+|+| .|.++..+++.   +|+++|.+++.++.+++.         +.+ ..+...+..+. ....+.||.
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l---------Ga~-~~i~~~~~~~~~~~~~~~~d~   94 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM---------GAD-HYIATLEEGDWGEKYFDTFDL   94 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH---------TCS-EEEEGGGTSCHHHHSCSCEEE
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc---------CCc-EEeeccchHHHHHhhhcccce
Confidence            7899999999998 46667777766   999999999999988763         212 11111111111 112357999


Q ss_pred             EEEccChH--HHHHHHHhccCCCcEEEEE
Q psy7830         207 IFFGAGTT--EVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       207 Ii~~~~~~--~l~~~l~~~LkpGG~Lvi~  233 (364)
                      |+......  ..+....+.|+++|++++.
T Consensus        95 vi~~~~~~~~~~~~~~~~~l~~~G~iv~~  123 (168)
T d1piwa2          95 IVVCASSLTDIDFNIMPKAMKVGGRIVSI  123 (168)
T ss_dssp             EEECCSCSTTCCTTTGGGGEEEEEEEEEC
T ss_pred             EEEEecCCccchHHHHHHHhhccceEEEe
Confidence            88643322  2345678999999999874

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.42  E-value=0.00018  Score=66.05  Aligned_cols=73  Identities=14%  Similarity=0.059  Sum_probs=60.2

Q ss_pred             ccChHHHHHHHHHHHhccCC------CCCEEEEECCCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCC
Q psy7830         114 VMEPPSYIARCLEQLVDHLQ------NGSRVLDIGSGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQ  183 (364)
Q Consensus       114 ~~s~P~~~a~~l~~L~~~l~------~g~~VLDiGcGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~  183 (364)
                      ++..+.+...+++.+.  +.      .+..|||||+|.|.+|..+...    +|+++|+|+.+++..++....       
T Consensus        19 fL~d~~i~~~Iv~~~~--l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~-------   89 (322)
T d1i4wa_          19 YLWNPTVYNKIFDKLD--LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG-------   89 (322)
T ss_dssp             CBCCHHHHHHHHHHHC--GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT-------
T ss_pred             ccCCHHHHHHHHHHhc--CCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC-------
Confidence            5578889999998874  32      4678999999999999998764    799999999999998876532       


Q ss_pred             CCCEEEEEcCCCC
Q psy7830         184 SKTLEFILKDARW  196 (364)
Q Consensus       184 ~~~v~~~~~D~~~  196 (364)
                       ++++++.+|+..
T Consensus        90 -~~~~ii~~D~l~  101 (322)
T d1i4wa_          90 -SPLQILKRDPYD  101 (322)
T ss_dssp             -SSCEEECSCTTC
T ss_pred             -CCcEEEeCchhh
Confidence             578999999864

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.32  E-value=0.00034  Score=58.03  Aligned_cols=91  Identities=15%  Similarity=0.146  Sum_probs=64.9

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC-----CCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH-----AEG  201 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~-----~~~  201 (364)
                      +++|++||-+|||. |..+..+++.    .|+++|.++..++.+++.         +..  +++..+..+..     ..+
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~---------Ga~--~~i~~~~~~~~~~i~~~t~   94 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL---------GAT--HVINSKTQDPVAAIKEITD   94 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH---------TCS--EEEETTTSCHHHHHHHHTT
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc---------CCe--EEEeCCCcCHHHHHHHHcC
Confidence            78999999999986 3445555555    778899999999998763         111  22322211110     123


Q ss_pred             CCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +.||+|+-.......++...+.++++|++++.
T Consensus        95 gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~  126 (174)
T d1f8fa2          95 GGVNFALESTGSPEILKQGVDALGILGKIAVV  126 (174)
T ss_dssp             SCEEEEEECSCCHHHHHHHHHTEEEEEEEEEC
T ss_pred             CCCcEEEEcCCcHHHHHHHHhcccCceEEEEE
Confidence            57999998888788889999999999999864

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.27  E-value=0.00012  Score=64.70  Aligned_cols=79  Identities=11%  Similarity=0.013  Sum_probs=60.7

Q ss_pred             CEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHh-cC-CCCC--CCCCEEEEEcCCCCCCCC-CCCeeEEE
Q psy7830         136 SRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKI-SR-PDLL--QSKTLEFILKDARWGHAE-GGPYDVIF  208 (364)
Q Consensus       136 ~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~-~~-~~~l--~~~~v~~~~~D~~~~~~~-~~~fD~Ii  208 (364)
                      .+|||.-||.|..+..++..  +|+++|.+|.+....++++.+ .. ....  -..|++++.+|..+.... ...||+|+
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvIY  169 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY  169 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEE
T ss_pred             CEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEEE
Confidence            48999999999999999988  999999999988888877655 11 0000  013799999998765433 35799999


Q ss_pred             EccChH
Q psy7830         209 FGAGTT  214 (364)
Q Consensus       209 ~~~~~~  214 (364)
                      .+.+++
T Consensus       170 lDPMFp  175 (250)
T d2oyra1         170 LDPMFP  175 (250)
T ss_dssp             ECCCCC
T ss_pred             ECCCCc
Confidence            998874

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.21  E-value=0.00076  Score=57.12  Aligned_cols=91  Identities=21%  Similarity=0.144  Sum_probs=62.8

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC------CCC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG------HAE  200 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~------~~~  200 (364)
                      +++|++||.+|||+ |..+..+++.    +|+++|.++..++.|++.         +.  -.++...-.+.      ...
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~---------Ga--~~~~~~~~~~~~~~i~~~t~   91 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ---------GF--EIADLSLDTPLHEQIAALLG   91 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---------TC--EEEETTSSSCHHHHHHHHHS
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc---------cc--cEEEeCCCcCHHHHHHHHhC
Confidence            89999999999998 5566666655    899999999999998763         21  11221111110      011


Q ss_pred             CCCeeEEEEccCh---------------HHHHHHHHhccCCCcEEEEE
Q psy7830         201 GGPYDVIFFGAGT---------------TEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       201 ~~~fD~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ...+|+++-....               ...++...+.++|||++++.
T Consensus        92 g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~  139 (195)
T d1kola2          92 EPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  139 (195)
T ss_dssp             SSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence            3468998855432               35788999999999999864

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.19  E-value=0.00071  Score=55.80  Aligned_cols=100  Identities=15%  Similarity=0.050  Sum_probs=68.3

Q ss_pred             HHHHHHhccCCCCCEEEEECCCcc-HHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC
Q psy7830         123 RCLEQLVDHLQNGSRVLDIGSGQG-YMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG  197 (364)
Q Consensus       123 ~~l~~L~~~l~~g~~VLDiGcGsG-~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~  197 (364)
                      ..+......+++|++||-+|+|.. .++..+++.    .|+++|.+++.++.+++.-         .  ..++..+....
T Consensus        21 ~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~g---------a--~~~i~~~~~~~   89 (172)
T d1h2ba2          21 RAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLG---------A--DHVVDARRDPV   89 (172)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTT---------C--SEEEETTSCHH
T ss_pred             HHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcc---------c--ceeecCcccHH
Confidence            344444334689999999999874 444566554    8899999999888887632         1  12232221110


Q ss_pred             -----CCCCCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         198 -----HAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       198 -----~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                           ......+|+|+-.......++...+.|++||++++.
T Consensus        90 ~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~  130 (172)
T d1h2ba2          90 KQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIV  130 (172)
T ss_dssp             HHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEEC
T ss_pred             HHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCCCEEEEE
Confidence                 011246999998888888889999999999999963

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.12  E-value=0.00096  Score=54.49  Aligned_cols=98  Identities=14%  Similarity=0.025  Sum_probs=64.2

Q ss_pred             HHHHHHhccCCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC
Q psy7830         123 RCLEQLVDHLQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH  198 (364)
Q Consensus       123 ~~l~~L~~~l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~  198 (364)
                      ..++...  +++|++||-+|||+ |.++..+++.   +|+++|.++..++.+++.         +.+  .++..+..+..
T Consensus        18 ~al~~~~--~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~---------Ga~--~~i~~~~~~~~   84 (166)
T d1llua2          18 KGLKQTN--ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL---------GAS--LTVNARQEDPV   84 (166)
T ss_dssp             HHHHHHT--CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT---------TCS--EEEETTTSCHH
T ss_pred             HHHHHhC--CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhcc---------Ccc--ccccccchhHH
Confidence            3445443  78999999999986 5566666666   999999999999888752         221  12222211110


Q ss_pred             ----CCCCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         199 ----AEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       199 ----~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                          .....+|.++........+....+.|++||++++.
T Consensus        85 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~G~iv~~  123 (166)
T d1llua2          85 EAIQRDIGGAHGVLVTAVSNSAFGQAIGMARRGGTIALV  123 (166)
T ss_dssp             HHHHHHHSSEEEEEECCSCHHHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHhhcCCcccccccccchHHHHHHHHhcCCcEEEEE
Confidence                01123555555555566778889999999998863

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.10  E-value=0.001  Score=55.30  Aligned_cols=91  Identities=15%  Similarity=0.050  Sum_probs=67.0

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC-------C
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH-------A  199 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~-------~  199 (364)
                      +++|++||-+|||. |.+++.+++.    .|+++|.+++.++.+++.         +...  ++.....+..       .
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~---------Ga~~--~i~~~~~~~~~~~~~~~~   94 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL---------GATD--CLNPRELDKPVQDVITEL   94 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT---------TCSE--EECGGGCSSCHHHHHHHH
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh---------CCCc--ccCCccchhhhhhhHhhh
Confidence            78999999999998 7777888777    799999999998888762         2221  1211111100       1


Q ss_pred             CCCCeeEEEEccChHHHHHHHHhccCCC-cEEEEE
Q psy7830         200 EGGPYDVIFFGAGTTEVSKTILSQLKPN-GRIVAP  233 (364)
Q Consensus       200 ~~~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi~  233 (364)
                      ....+|+|+-....+..+....+.+++| |++++.
T Consensus        95 ~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~v  129 (174)
T d1e3ia2          95 TAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVV  129 (174)
T ss_dssp             HTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             hcCCCcEEEEecccchHHHHHHHHhhcCCeEEEec
Confidence            1356999998888888899999999996 998874

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00044  Score=56.89  Aligned_cols=98  Identities=14%  Similarity=0.068  Sum_probs=66.4

Q ss_pred             HHHHHHhccCCCCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC-C
Q psy7830         123 RCLEQLVDHLQNGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW-G  197 (364)
Q Consensus       123 ~~l~~L~~~l~~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~-~  197 (364)
                      ..++...  +++|++||-+|||. |.++..+++.   +++++|.+++..+.+++.         +.+.  ++...-.. .
T Consensus        21 ~al~~~~--~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~l---------Gad~--~i~~~~~~~~   87 (168)
T d1uufa2          21 SPLRHWQ--AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL---------GADE--VVNSRNADEM   87 (168)
T ss_dssp             HHHHHTT--CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH---------TCSE--EEETTCHHHH
T ss_pred             HHHHHhC--CCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhcc---------CCcE--EEECchhhHH
Confidence            3444433  78999999999985 6667777766   888999999888877652         2121  22211111 1


Q ss_pred             CCCCCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         198 HAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       198 ~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ......+|+++-.......+....+.++++|++++.
T Consensus        88 ~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~  123 (168)
T d1uufa2          88 AAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLV  123 (168)
T ss_dssp             HTTTTCEEEEEECCSSCCCHHHHHTTEEEEEEEEEC
T ss_pred             HHhcCCCceeeeeeecchhHHHHHHHHhcCCEEEEe
Confidence            112357999987766666677888999999999974

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.95  E-value=0.00099  Score=57.81  Aligned_cols=55  Identities=20%  Similarity=0.137  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHH
Q psy7830         118 PSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIK  175 (364)
Q Consensus       118 P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~  175 (364)
                      ..+..++++...   .+|+.|||.-||||..+.++.++  +.+|+|++++.++.|++++.
T Consensus       199 ~~L~~~lI~~~s---~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         199 RDLIERIIRASS---NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHHHC---CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHhC---CCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence            467777777764   78999999999999999888887  99999999999999999875

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.90  E-value=0.0011  Score=54.47  Aligned_cols=98  Identities=15%  Similarity=0.134  Sum_probs=66.9

Q ss_pred             HHHHHHhccCCCCCEEEEECC-C-ccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCC
Q psy7830         123 RCLEQLVDHLQNGSRVLDIGS-G-QGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARW  196 (364)
Q Consensus       123 ~~l~~L~~~l~~g~~VLDiGc-G-sG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~  196 (364)
                      .++....  ++++++||-+|| | .|.++..+++.    +|+++|.++..++.+++.         +.+  .++..+..+
T Consensus        18 ~al~~~~--~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~---------Ga~--~~i~~~~~~   84 (170)
T d1jvba2          18 RAVRKAS--LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA---------GAD--YVINASMQD   84 (170)
T ss_dssp             HHHHHTT--CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH---------TCS--EEEETTTSC
T ss_pred             HHHHHhC--CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc---------CCc--eeeccCCcC
Confidence            3455444  789999999997 3 34555555554    999999999999888763         111  122222111


Q ss_pred             CC------CCCCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         197 GH------AEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       197 ~~------~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ..      .....||+|+-...-...++...+.++|||++++.
T Consensus        85 ~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~  127 (170)
T d1jvba2          85 PLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMV  127 (170)
T ss_dssp             HHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEEC
T ss_pred             HHHHHHHHhhcccchhhhcccccchHHHhhhhhcccCCEEEEe
Confidence            10      11346999998887778888899999999998864

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.0016  Score=53.65  Aligned_cols=91  Identities=19%  Similarity=0.115  Sum_probs=61.2

Q ss_pred             CCCCCEEEEECC--CccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC--CCCC---CCCC
Q psy7830         132 LQNGSRVLDIGS--GQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD--ARWG---HAEG  201 (364)
Q Consensus       132 l~~g~~VLDiGc--GsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D--~~~~---~~~~  201 (364)
                      +++|++||-.|+  |.|..+..+++.   +|++++.+++..+.+++         ++.+.+ +...+  ..+.   ....
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~---------~Ga~~v-i~~~~~~~~~~i~~~t~~   95 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ---------NGAHEV-FNHREVNYIDKIKKYVGE   95 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH---------TTCSEE-EETTSTTHHHHHHHHHCT
T ss_pred             CCCCCEEEEEeccccccccccccccccCcccccccccccccccccc---------cCcccc-cccccccHHHHhhhhhcc
Confidence            789999999996  346667777766   99999989888877765         222222 11111  1110   0123


Q ss_pred             CCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ..+|+|+.... ....+...+.|+|+|+++..
T Consensus        96 ~g~d~v~d~~g-~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          96 KGIDIIIEMLA-NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             TCEEEEEESCH-HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCceEEeeccc-HHHHHHHHhccCCCCEEEEE
Confidence            56999987655 45678888999999998863

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=96.76  E-value=0.0013  Score=57.82  Aligned_cols=97  Identities=16%  Similarity=0.148  Sum_probs=67.4

Q ss_pred             CCCCEEEEECCCccHHHHHHHcc--------------------------------------------eEEEEeCCHHHHH
Q psy7830         133 QNGSRVLDIGSGQGYMATAKEWL--------------------------------------------SSVRQLLLPETLN  168 (364)
Q Consensus       133 ~~g~~VLDiGcGsG~~a~~la~~--------------------------------------------~V~~vDis~~~l~  168 (364)
                      ..+..++|..||||++.+.++..                                            .++|.|+++.+++
T Consensus        49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~  128 (249)
T d1o9ga_          49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ  128 (249)
T ss_dssp             CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence            34557999999999998765431                                            4678999999999


Q ss_pred             HHH---HHHHh-cCCCCCCCCCEEEEEcCCCCCCC-----CCCCeeEEEEccChHH---------------HHHHHHhcc
Q psy7830         169 NSL---KNIKI-SRPDLLQSKTLEFILKDARWGHA-----EGGPYDVIFFGAGTTE---------------VSKTILSQL  224 (364)
Q Consensus       169 ~a~---~~~~~-~~~~~l~~~~v~~~~~D~~~~~~-----~~~~fD~Ii~~~~~~~---------------l~~~l~~~L  224 (364)
                      .|+   +|+.. +.     ...+.+...|+++...     ....+++|++|.++-+               +...+.+.+
T Consensus       129 ~A~~~r~n~~~Agl-----~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~  203 (249)
T d1o9ga_         129 AARRLRERLTAEGG-----ALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASAL  203 (249)
T ss_dssp             HHHHHHHHHHHTTS-----SCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCC-----CceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccC
Confidence            884   57766 32     2468999999865432     1345799999988732               344567777


Q ss_pred             CCCcEEEEEE
Q psy7830         225 KPNGRIVAPV  234 (364)
Q Consensus       225 kpGG~Lvi~~  234 (364)
                      .....++++.
T Consensus       204 p~~s~~~it~  213 (249)
T d1o9ga_         204 PAHAVIAVTD  213 (249)
T ss_dssp             CTTCEEEEEE
T ss_pred             CCCcEEEEeC
Confidence            6556666554

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.72  E-value=0.0027  Score=51.58  Aligned_cols=100  Identities=13%  Similarity=-0.001  Sum_probs=63.5

Q ss_pred             HHHHHHhccCCCCCEEEEECCCcc-HHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC--CC
Q psy7830         123 RCLEQLVDHLQNGSRVLDIGSGQG-YMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA--RW  196 (364)
Q Consensus       123 ~~l~~L~~~l~~g~~VLDiGcGsG-~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~--~~  196 (364)
                      ..+....  +++|++||-.|||+- ..+..+++.   +|+++|.+++.++.+++.         +.+.+ +...+.  ..
T Consensus        18 ~al~~~~--~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~---------Ga~~~-~~~~~~~~~~   85 (168)
T d1rjwa2          18 KALKVTG--AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL---------GADLV-VNPLKEDAAK   85 (168)
T ss_dssp             HHHHHHT--CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT---------TCSEE-ECTTTSCHHH
T ss_pred             HHHHHhC--CCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc---------Cccee-cccccchhhh
Confidence            3444443  789999999999884 444555554   999999999999888762         21111 111110  00


Q ss_pred             -CCCCCCCeeEEEEccChHHHHHHHHhccCCCcEEEEEE
Q psy7830         197 -GHAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       197 -~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                       .......+|.++.+......+....+.|++||++++.-
T Consensus        86 ~~~~~~~~~~~~v~~~~~~~~~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          86 FMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             HHHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECC
T ss_pred             hcccccCCCceEEeecCCHHHHHHHHHHhccCCceEecc
Confidence             00001235555566666778889999999999988743

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.70  E-value=0.00098  Score=59.65  Aligned_cols=58  Identities=17%  Similarity=0.079  Sum_probs=50.4

Q ss_pred             ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHh
Q psy7830         116 EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKI  176 (364)
Q Consensus       116 s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~  176 (364)
                      -.+.+..++++...   .+|+.|||.-||||..+.++..+  +.+|+|++++.++.|++++..
T Consensus       235 kP~~L~~rlI~~~s---~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         235 FPAKLPEFFIRMLT---EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             CCTHHHHHHHHHHC---CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSC
T ss_pred             CchHHHHHhhhhcc---cCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHh
Confidence            34567788888764   79999999999999999888888  999999999999999988754

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.59  E-value=0.0063  Score=50.12  Aligned_cols=94  Identities=15%  Similarity=-0.021  Sum_probs=61.2

Q ss_pred             CCCCCEEEEECCCccH-HHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE-EEEEcCCC--C--CCCCC
Q psy7830         132 LQNGSRVLDIGSGQGY-MATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL-EFILKDAR--W--GHAEG  201 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~-~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v-~~~~~D~~--~--~~~~~  201 (364)
                      +++|++||-+|||... .+..+++.    +|+++|.+++.++.+++.         +...+ .+...|..  .  .....
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l---------Ga~~~i~~~~~d~~~~~~~~~~~~   95 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL---------GATECLNPKDYDKPIYEVICEKTN   95 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT---------TCSEEECGGGCSSCHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc---------CCcEEEcCCCchhHHHHHHHHhcC
Confidence            7899999999999744 44555554    899999999999999762         21111 11111210  0  00123


Q ss_pred             CCeeEEEEccChHHHHHHHHhccCC-CcEEEEEE
Q psy7830         202 GPYDVIFFGAGTTEVSKTILSQLKP-NGRIVAPV  234 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~l~~~l~~~Lkp-GG~Lvi~~  234 (364)
                      +.+|+|+-..............+++ +|++++.-
T Consensus        96 ~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG  129 (174)
T d1p0fa2          96 GGVDYAVECAGRIETMMNALQSTYCGSGVTVVLG  129 (174)
T ss_dssp             SCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECC
T ss_pred             CCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEE
Confidence            4699999887777777777776655 58877633

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.53  E-value=0.0025  Score=55.90  Aligned_cols=58  Identities=26%  Similarity=0.274  Sum_probs=50.1

Q ss_pred             ChHHHHHHHHHHHhccCCCCCEEEEECCCccHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHh
Q psy7830         116 EPPSYIARCLEQLVDHLQNGSRVLDIGSGQGYMATAKEWL--SSVRQLLLPETLNNSLKNIKI  176 (364)
Q Consensus       116 s~P~~~a~~l~~L~~~l~~g~~VLDiGcGsG~~a~~la~~--~V~~vDis~~~l~~a~~~~~~  176 (364)
                      -...+..++++...   .+|+.|||.-||||..+.+..++  +.+|+|+++..++.|++++..
T Consensus       192 kP~~L~~~~I~~~s---~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~  251 (279)
T d1eg2a_         192 KPAAVIERLVRALS---HPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTF  251 (279)
T ss_dssp             CCHHHHHHHHHHHS---CTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHhhc---CCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHH
Confidence            34456777777654   79999999999999999888877  999999999999999999876

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.26  E-value=0.0015  Score=53.90  Aligned_cols=89  Identities=15%  Similarity=0.091  Sum_probs=64.6

Q ss_pred             CCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEE
Q psy7830         134 NGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFF  209 (364)
Q Consensus       134 ~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~  209 (364)
                      +..+|+-+|+|. |..++..+..   .|+.+|.+++.++..+.....         ++++...+-......-...|+|+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~---------~~~~~~~~~~~l~~~~~~aDivI~  101 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS---------RVELLYSNSAEIETAVAEADLLIG  101 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG---------GSEEEECCHHHHHHHHHTCSEEEE
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc---------cceeehhhhhhHHHhhccCcEEEE
Confidence            457999999996 6666666665   999999999999888776544         455555543222211246899998


Q ss_pred             ccChHH------HHHHHHhccCCCcEEE
Q psy7830         210 GAGTTE------VSKTILSQLKPNGRIV  231 (364)
Q Consensus       210 ~~~~~~------l~~~l~~~LkpGG~Lv  231 (364)
                      ......      +.+++.+.+|||.++|
T Consensus       102 aalipG~~aP~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1         102 AVLVPGRRAPILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             CCCCTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred             eeecCCcccCeeecHHHHhhcCCCcEEE
Confidence            766543      4589999999999887

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.14  E-value=0.0092  Score=49.18  Aligned_cols=93  Identities=15%  Similarity=0.012  Sum_probs=59.6

Q ss_pred             CCCCCEEEEECCCccH-HHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC------CCC
Q psy7830         132 LQNGSRVLDIGSGQGY-MATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG------HAE  200 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~-~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~------~~~  200 (364)
                      +++|++|+=+|||... ++..+++.    +|+++|.+++.++.|++.-..          ..+...|....      ...
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~----------~~in~~~~~~~~~~~~~~~~   96 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT----------ECISPKDSTKPISEVLSEMT   96 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS----------EEECGGGCSSCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc----------EEECccccchHHHHHHHHhc
Confidence            7899999999999744 44555554    899999999999999875221          11111111110      012


Q ss_pred             CCCeeEEEEccChHHHHHHHHhcc-CCCcEEEEEE
Q psy7830         201 GGPYDVIFFGAGTTEVSKTILSQL-KPNGRIVAPV  234 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~~l~~~l~~~L-kpGG~Lvi~~  234 (364)
                      ...+|+++-...-..........+ +.+|++++.-
T Consensus        97 g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG  131 (176)
T d1d1ta2          97 GNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVG  131 (176)
T ss_dssp             TSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECS
T ss_pred             cccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEE
Confidence            346999887777666555555555 5558887743

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.10  E-value=0.0061  Score=49.73  Aligned_cols=94  Identities=17%  Similarity=0.125  Sum_probs=64.7

Q ss_pred             CCCCCEEEEECCCc-cHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEc-CCCCC------CC
Q psy7830         132 LQNGSRVLDIGSGQ-GYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILK-DARWG------HA  199 (364)
Q Consensus       132 l~~g~~VLDiGcGs-G~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~-D~~~~------~~  199 (364)
                      +++|++||-.|||. |.+++.+++.    .|+++|.++..++.+++.         +.+.  ++.. +..+.      ..
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l---------Ga~~--~i~~~~~~~~~~~~~~~~   94 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF---------GATE--CINPQDFSKPIQEVLIEM   94 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH---------TCSE--EECGGGCSSCHHHHHHHH
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh---------CCcE--EEeCCchhhHHHHHHHHH
Confidence            78999999999984 3444555554    899999999999888763         2111  1211 11110      01


Q ss_pred             CCCCeeEEEEccChHHHHHHHHhccCCCcEEEEEEcC
Q psy7830         200 EGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       200 ~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ..+.+|+|+-........+.....+++||.+++....
T Consensus        95 ~~~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~~~  131 (176)
T d2fzwa2          95 TDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGV  131 (176)
T ss_dssp             TTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSC
T ss_pred             cCCCCcEeeecCCCHHHHHHHHHhhcCCceeEEEEee
Confidence            1356999998888888889999999999887765443

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=95.98  E-value=0.0083  Score=53.42  Aligned_cols=88  Identities=17%  Similarity=0.023  Sum_probs=64.0

Q ss_pred             CEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC-CCCeeEEEEcc
Q psy7830         136 SRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE-GGPYDVIFFGA  211 (364)
Q Consensus       136 ~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD~Ii~~~  211 (364)
                      ++|||+-||.|.++..+-..   .+.++|+++.+.+..+.|..           -.++.+|+.+.... ....|+++...
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~-----------~~~~~~Di~~~~~~~~~~~dll~~g~   69 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS-----------AKLIKGDISKISSDEFPKCDGIIGGP   69 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC-----------SEEEESCTTTSCGGGSCCCSEEEECC
T ss_pred             CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC-----------CCCccCChhhCCHhHcccccEEeecc
Confidence            57999999999999777655   67799999999888877752           23567898876443 24689999988


Q ss_pred             ChHH----------------HH---HHHHhccCCCcEEEEEE
Q psy7830         212 GTTE----------------VS---KTILSQLKPNGRIVAPV  234 (364)
Q Consensus       212 ~~~~----------------l~---~~l~~~LkpGG~Lvi~~  234 (364)
                      +|+.                +.   -.+.+.++|.-.++=-+
T Consensus        70 PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk~~~lENV  111 (324)
T d1dcta_          70 PCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENV  111 (324)
T ss_dssp             CCTTTSSSSCCCCSSSHHHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred             cccccccccccccccccccchHHHHHHHHHhhCCceeecccc
Confidence            8854                11   24566778875555444

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.78  E-value=0.0044  Score=50.88  Aligned_cols=95  Identities=21%  Similarity=0.229  Sum_probs=60.8

Q ss_pred             HHHHHhccCCCCCEEEEECC-Cc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC
Q psy7830         124 CLEQLVDHLQNGSRVLDIGS-GQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH  198 (364)
Q Consensus       124 ~l~~L~~~l~~g~~VLDiGc-Gs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~  198 (364)
                      +++..  .+++|++||-.|. |. |..+..+++.   +|++++.+++..+.+++         ++.+.+ +...|.....
T Consensus        19 al~~~--~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~---------lGa~~~-i~~~~~~~~~   86 (171)
T d1iz0a2          19 ALKRA--QARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA---------LGAEEA-ATYAEVPERA   86 (171)
T ss_dssp             HHHHT--TCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH---------TTCSEE-EEGGGHHHHH
T ss_pred             HHHHh--CCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc---------ccccee-eehhhhhhhh
Confidence            45443  3789999999885 43 5666667766   99999999988877765         222222 1111211111


Q ss_pred             CCCCCeeEEEEccChHHHHHHHHhccCCCcEEEE
Q psy7830         199 AEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       199 ~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi  232 (364)
                      .....+|+|+-...  ..+....+.|++||++++
T Consensus        87 ~~~~g~D~v~d~~G--~~~~~~~~~l~~~G~~v~  118 (171)
T d1iz0a2          87 KAWGGLDLVLEVRG--KEVEESLGLLAHGGRLVY  118 (171)
T ss_dssp             HHTTSEEEEEECSC--TTHHHHHTTEEEEEEEEE
T ss_pred             hccccccccccccc--hhHHHHHHHHhcCCcEEE
Confidence            12356999986433  235677899999999886

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=95.59  E-value=0.0083  Score=53.86  Aligned_cols=70  Identities=16%  Similarity=-0.011  Sum_probs=54.6

Q ss_pred             CCCEEEEECCCccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC-CCCeeEEEE
Q psy7830         134 NGSRVLDIGSGQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE-GGPYDVIFF  209 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~-~~~fD~Ii~  209 (364)
                      .+++|||+.||.|.++..+.+.   .|.++|+++.+++..+.|...         .   ..+|+...... ...+|+++.
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~---------~---~~~Di~~~~~~~~~~~Dll~g   77 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE---------K---PEGDITQVNEKTIPDHDILCA   77 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC---------C---CBSCGGGSCGGGSCCCSEEEE
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCC---------C---CcCchhcCchhhcceeeeeec
Confidence            6789999999999999888776   677899999999999888733         1   24677655432 246899999


Q ss_pred             ccChHH
Q psy7830         210 GAGTTE  215 (364)
Q Consensus       210 ~~~~~~  215 (364)
                      ..+|+.
T Consensus        78 gpPCq~   83 (327)
T d2c7pa1          78 GFPCQA   83 (327)
T ss_dssp             ECCCTT
T ss_pred             ccccch
Confidence            888854

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=95.56  E-value=0.027  Score=45.78  Aligned_cols=91  Identities=14%  Similarity=0.091  Sum_probs=61.8

Q ss_pred             CCCCCEEEEECCCc--cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC------CC
Q psy7830         132 LQNGSRVLDIGSGQ--GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH------AE  200 (364)
Q Consensus       132 l~~g~~VLDiGcGs--G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~------~~  200 (364)
                      +++|++||-.|+|+  |..+..+++.   +|++++.+++..+.+++.         +.+.  ++...-.+..      ..
T Consensus        26 l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~l---------Ga~~--vi~~~~~d~~~~v~~~t~   94 (179)
T d1qora2          26 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA---------GAWQ--VINYREEDLVERLKEITG   94 (179)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH---------TCSE--EEETTTSCHHHHHHHHTT
T ss_pred             CCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhc---------CCeE--EEECCCCCHHHHHHHHhC
Confidence            78999999997765  5566777776   999999999999888753         2121  2211111110      12


Q ss_pred             CCCeeEEEEccChHHHHHHHHhccCCCcEEEEEE
Q psy7830         201 GGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ...+|+|+-... ..........++++|++++..
T Consensus        95 g~g~d~v~d~~g-~~~~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2          95 GKKVRVVYDSVG-RDTWERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             TCCEEEEEECSC-GGGHHHHHHTEEEEEEEEECC
T ss_pred             CCCeEEEEeCcc-HHHHHHHHHHHhcCCeeeecc
Confidence            356998887665 445678889999999987643

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.46  E-value=0.02  Score=46.65  Aligned_cols=94  Identities=15%  Similarity=0.031  Sum_probs=62.3

Q ss_pred             CCCCCEEEEECCCccHHH-HHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC------CC
Q psy7830         132 LQNGSRVLDIGSGQGYMA-TAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH------AE  200 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a-~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~------~~  200 (364)
                      +++|++||-+|+|.+... +.+++.    +|+++|.++...+.+++.-.         .. .+...+..+..      ..
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga---------~~-~i~~~~~~~~~~~~~~~~~   95 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA---------TE-CVNPQDYKKPIQEVLTEMS   95 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC---------SE-EECGGGCSSCHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCC---------ee-EEecCCchhHHHHHHHHHh
Confidence            789999999999865433 334433    99999999999998877421         11 11111111110      12


Q ss_pred             CCCeeEEEEccChHHHHHHHHhccCCCcEEEEEEc
Q psy7830         201 GGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       201 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      .+.+|+|+-........+.....+++||..++...
T Consensus        96 ~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~  130 (176)
T d2jhfa2          96 NGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVG  130 (176)
T ss_dssp             TSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECS
T ss_pred             cCCCCEEEecCCchhHHHHHHHHHhcCCcceEEec
Confidence            35799999988888888888888888754444443

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=95.40  E-value=0.037  Score=44.78  Aligned_cols=94  Identities=16%  Similarity=0.146  Sum_probs=61.8

Q ss_pred             CCCCCEEEEECCCccHHH-HHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC-------C
Q psy7830         132 LQNGSRVLDIGSGQGYMA-TAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH-------A  199 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a-~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~-------~  199 (364)
                      +++|++||-+|||.+... ..+++.    .|+++|.+++.++.+++         ++.+  .++...-....       .
T Consensus        26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~---------~GAd--~~in~~~~~~~~~~~~~~~   94 (175)
T d1cdoa2          26 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV---------FGAT--DFVNPNDHSEPISQVLSKM   94 (175)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH---------TTCC--EEECGGGCSSCHHHHHHHH
T ss_pred             CCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH---------cCCc--EEEcCCCcchhHHHHHHhh
Confidence            789999999999986554 333333    89999999999988876         2211  12221111111       0


Q ss_pred             CCCCeeEEEEccChHHHHHHHHhccCCCcEEEEEEcC
Q psy7830         200 EGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       200 ~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ....+|+|+-..............+++||.+++..+.
T Consensus        95 ~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~  131 (175)
T d1cdoa2          95 TNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGW  131 (175)
T ss_dssp             HTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSC
T ss_pred             ccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEe
Confidence            1246999998888777788888887776555544443

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.38  E-value=0.056  Score=44.14  Aligned_cols=106  Identities=24%  Similarity=0.202  Sum_probs=68.3

Q ss_pred             ChHHHHHH-HHHHHhccCCCCCEEEEECCCc--cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEE
Q psy7830         116 EPPSYIAR-CLEQLVDHLQNGSRVLDIGSGQ--GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEF  189 (364)
Q Consensus       116 s~P~~~a~-~l~~L~~~l~~g~~VLDiGcGs--G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~  189 (364)
                      ..|.+++. .+.... .+++|++||-.|++.  |..++.+++.   +|+++..+++..+.+++.         +.+.+ +
T Consensus        11 g~~glTA~~al~~~~-~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~---------Ga~~v-i   79 (182)
T d1v3va2          11 GMPGLTAYFGLLEVC-GVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI---------GFDAA-F   79 (182)
T ss_dssp             SHHHHHHHHHHHTTT-CCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---------TCSEE-E
T ss_pred             hhHHHHHHHHHHHHh-CCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh---------hhhhh-c
Confidence            34555554 333333 378999999888865  4555666666   999999999888777663         22222 2


Q ss_pred             EEcCCC--CC---CCCCCCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         190 ILKDAR--WG---HAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       190 ~~~D~~--~~---~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ...|..  +.   ......+|+|+-... ....+...+.|++||++++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~Gvd~v~D~vG-~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2          80 NYKTVNSLEEALKKASPDGYDCYFDNVG-GEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             ETTSCSCHHHHHHHHCTTCEEEEEESSC-HHHHHHHGGGEEEEEEEEEC
T ss_pred             ccccccHHHHHHHHhhcCCCceeEEecC-chhhhhhhhhccCCCeEEee
Confidence            222211  00   012356999887665 56778999999999998863

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.12  E-value=0.035  Score=45.24  Aligned_cols=91  Identities=18%  Similarity=0.094  Sum_probs=59.1

Q ss_pred             CCCCCEEEEECC--CccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcC--CCCCC---CCC
Q psy7830         132 LQNGSRVLDIGS--GQGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKD--ARWGH---AEG  201 (364)
Q Consensus       132 l~~g~~VLDiGc--GsG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D--~~~~~---~~~  201 (364)
                      +++|++||-.|.  |.|..++.+++.   +++++.-+++..+.+++.         +.+.+ +...+  ..+..   ...
T Consensus        23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~---------Ga~~v-i~~~~~~~~~~v~~~t~~   92 (183)
T d1pqwa_          23 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL---------GVEYV-GDSRSVDFADEILELTDG   92 (183)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT---------CCSEE-EETTCSTHHHHHHHHTTT
T ss_pred             CCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccc---------ccccc-ccCCccCHHHHHHHHhCC
Confidence            789999999873  335666777766   888888888777766642         22222 11111  11100   123


Q ss_pred             CCeeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         202 GPYDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       202 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      ..||+|+....- ..+..+.+.|+++|+++..
T Consensus        93 ~g~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          93 YGVDVVLNSLAG-EAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             CCEEEEEECCCT-HHHHHHHHTEEEEEEEEEC
T ss_pred             CCEEEEEecccc-hHHHHHHHHhcCCCEEEEE
Confidence            569999976664 5667788999999998874

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=0.011  Score=53.10  Aligned_cols=71  Identities=18%  Similarity=0.061  Sum_probs=50.9

Q ss_pred             CCEEEEECCCccHHHHHHHcc-----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCC---CCCeeE
Q psy7830         135 GSRVLDIGSGQGYMATAKEWL-----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAE---GGPYDV  206 (364)
Q Consensus       135 g~~VLDiGcGsG~~a~~la~~-----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~---~~~fD~  206 (364)
                      .++|+|+.||.|.++..+...     .|.++|+++.+++..+.|.          ++..++.+|+.+....   ...+|+
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~----------~~~~~~~~di~~~~~~~~~~~~~Dl   71 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF----------PHTQLLAKTIEGITLEEFDRLSFDM   71 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC----------TTSCEECSCGGGCCHHHHHHHCCSE
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC----------CCCCcccCchhhCCHhHcCCCCccE
Confidence            468999999999988776543     3678999999998888775          2345667787655322   136899


Q ss_pred             EEEccChHH
Q psy7830         207 IFFGAGTTE  215 (364)
Q Consensus       207 Ii~~~~~~~  215 (364)
                      ++...+|+.
T Consensus        72 l~ggpPCq~   80 (343)
T d1g55a_          72 ILMSPPCQP   80 (343)
T ss_dssp             EEECCC---
T ss_pred             EEeeccccc
Confidence            999988864

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.67  E-value=0.031  Score=46.03  Aligned_cols=109  Identities=12%  Similarity=0.021  Sum_probs=66.0

Q ss_pred             HHHHHH-HHHHHhc--cCCCCCEEEEECCCc--cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEE
Q psy7830         118 PSYIAR-CLEQLVD--HLQNGSRVLDIGSGQ--GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEF  189 (364)
Q Consensus       118 P~~~a~-~l~~L~~--~l~~g~~VLDiGcGs--G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~  189 (364)
                      +.+++. ++..|..  ..++|++||--|++.  |.+++.+++.   +|+++--+++..+.+++.         +.+.+--
T Consensus        12 aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~l---------Ga~~vi~   82 (176)
T d1xa0a2          12 AGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVL---------GAKEVLA   82 (176)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHT---------TCSEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhc---------ccceeee
Confidence            445554 3344421  246789999998654  4566667766   999999998888888753         2222111


Q ss_pred             EEcCCCCC--CCCCCCeeEEEEccChHHHHHHHHhccCCCcEEEEEEcC
Q psy7830         190 ILKDARWG--HAEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       190 ~~~D~~~~--~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      ...+..+.  ....+.||+|+-+.. ...+....+.|++||+++..-..
T Consensus        83 ~~~~~~~~~~~~~~~gvD~vid~vg-g~~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2          83 REDVMAERIRPLDKQRWAAAVDPVG-GRTLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             CC---------CCSCCEEEEEECST-TTTHHHHHHTEEEEEEEEECSCC
T ss_pred             cchhHHHHHHHhhccCcCEEEEcCC-chhHHHHHHHhCCCceEEEeecc
Confidence            11111111  112457998876544 44678889999999999875433

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.13  E-value=0.013  Score=48.69  Aligned_cols=96  Identities=20%  Similarity=0.085  Sum_probs=57.5

Q ss_pred             CCCEEEEECCCc-cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCC---CCEEEEEcCCCCCC--------
Q psy7830         134 NGSRVLDIGSGQ-GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQS---KTLEFILKDARWGH--------  198 (364)
Q Consensus       134 ~g~~VLDiGcGs-G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~---~~v~~~~~D~~~~~--------  198 (364)
                      +..+|+-||+|. |..++..|..   .|+.+|+++..++..++...+...  +..   ...+...+.+....        
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~--~~~~~~~~~~~~~gyA~~~s~~~~~~~~  105 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFIT--VDDEAMKTAETAGGYAKEMGEEFRKKQA  105 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECC--C-----------------------CCHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEE--EeccccccccccccchhhcCHHHHHHHH
Confidence            356899999997 5556666655   999999999999888775433110  000   00110001111000        


Q ss_pred             ----CCCCCeeEEEEccChHH------HHHHHHhccCCCcEEE
Q psy7830         199 ----AEGGPYDVIFFGAGTTE------VSKTILSQLKPNGRIV  231 (364)
Q Consensus       199 ----~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lv  231 (364)
                          ..-...|+|+.....+.      +.+++.+.+|||.++|
T Consensus       106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV  148 (183)
T d1l7da1         106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII  148 (183)
T ss_dssp             HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred             HHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence                00135799998766543      5589999999999887

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=93.19  E-value=0.1  Score=42.80  Aligned_cols=95  Identities=20%  Similarity=0.212  Sum_probs=53.0

Q ss_pred             CCCCCEEEEECCCc---cHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEE-EcCCCCCC------
Q psy7830         132 LQNGSRVLDIGSGQ---GYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFI-LKDARWGH------  198 (364)
Q Consensus       132 l~~g~~VLDiGcGs---G~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~-~~D~~~~~------  198 (364)
                      +++|.+||=+.+|+   |..++.+++.   +|+++--++...+...+.++.     ++.+.+-.. ..|..+..      
T Consensus        26 ~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~-----lGad~vi~~~~~~~~~~~~~v~~~  100 (189)
T d1gu7a2          26 LTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKE-----LGATQVITEDQNNSREFGPTIKEW  100 (189)
T ss_dssp             CCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHH-----HTCSEEEEHHHHHCGGGHHHHHHH
T ss_pred             CCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhh-----ccccEEEeccccchhHHHHHHHHH
Confidence            78999888884444   4556667766   777764343333333333333     222222111 11211110      


Q ss_pred             --CCCCCeeEEEEccChHHHHHHHHhccCCCcEEEE
Q psy7830         199 --AEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       199 --~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi  232 (364)
                        .....+|+|+-... ........+.|+++|+++.
T Consensus       101 ~~~~g~~vdvv~D~vg-~~~~~~~~~~l~~~G~~v~  135 (189)
T d1gu7a2         101 IKQSGGEAKLALNCVG-GKSSTGIARKLNNNGLMLT  135 (189)
T ss_dssp             HHHHTCCEEEEEESSC-HHHHHHHHHTSCTTCEEEE
T ss_pred             HhhccCCceEEEECCC-cchhhhhhhhhcCCcEEEE
Confidence              01346899885444 4456778899999999875

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.65  E-value=0.075  Score=43.65  Aligned_cols=105  Identities=21%  Similarity=0.202  Sum_probs=62.7

Q ss_pred             hHHHHHHH-HHHHhccCCCC--CEEEEEC--CCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCE
Q psy7830         117 PPSYIARC-LEQLVDHLQNG--SRVLDIG--SGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTL  187 (364)
Q Consensus       117 ~P~~~a~~-l~~L~~~l~~g--~~VLDiG--cGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v  187 (364)
                      -|.+++.. +..+. .+++|  +.||-.|  .|-|..++.+++.    .|+++..+++......+.+        +.+ .
T Consensus        11 ~~glTA~~~l~~~~-~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~--------gad-~   80 (187)
T d1vj1a2          11 MPGLTSLIGVQEKG-HISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSEL--------GFD-A   80 (187)
T ss_dssp             HHHHHHHHHHHHHS-CCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHS--------CCS-E
T ss_pred             cHHHHHHHHHHHHh-CCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcc--------cce-E
Confidence            34455543 33333 26766  7799877  3568888998886    6777777766655444332        212 1


Q ss_pred             EEEEc--CCCCCC--CCCCCeeEEEEccChHHHHHHHHhccCCCcEEEE
Q psy7830         188 EFILK--DARWGH--AEGGPYDVIFFGAGTTEVSKTILSQLKPNGRIVA  232 (364)
Q Consensus       188 ~~~~~--D~~~~~--~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi  232 (364)
                      -+...  |..+..  .....+|+|+-... ...+....+.|++||+++.
T Consensus        81 vi~~~~~~~~~~~~~~~~~GvDvv~D~vG-g~~~~~~~~~l~~~G~iv~  128 (187)
T d1vj1a2          81 AVNYKTGNVAEQLREACPGGVDVYFDNVG-GDISNTVISQMNENSHIIL  128 (187)
T ss_dssp             EEETTSSCHHHHHHHHCTTCEEEEEESSC-HHHHHHHHTTEEEEEEEEE
T ss_pred             EeeccchhHHHHHHHHhccCceEEEecCC-chhHHHHhhhccccccEEE
Confidence            11111  111100  01246999986555 4567888999999999975

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=92.43  E-value=0.12  Score=41.79  Aligned_cols=91  Identities=13%  Similarity=0.051  Sum_probs=59.1

Q ss_pred             CCCCCEEEEECCC--ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCC-CCC--CCCCCC
Q psy7830         132 LQNGSRVLDIGSG--QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDA-RWG--HAEGGP  203 (364)
Q Consensus       132 l~~g~~VLDiGcG--sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~-~~~--~~~~~~  203 (364)
                      .+++.+||--|++  -|..+..+++.   +|+++.-+++..+.+++.         +.+.+ +...|. ...  ....+.
T Consensus        21 ~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~l---------Gad~v-i~~~~~~~~~~~~~~~~g   90 (167)
T d1tt7a2          21 SPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQL---------GASEV-ISREDVYDGTLKALSKQQ   90 (167)
T ss_dssp             CGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHH---------TCSEE-EEHHHHCSSCCCSSCCCC
T ss_pred             CCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhh---------cccce-EeccchhchhhhcccCCC
Confidence            3457789987743  35666777776   999999998888887653         22222 221221 111  112357


Q ss_pred             eeEEEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         204 YDVIFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       204 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      +|+|+-+.. ...+....+.|+++|++++.
T Consensus        91 vd~vid~vg-g~~~~~~~~~l~~~G~iv~~  119 (167)
T d1tt7a2          91 WQGAVDPVG-GKQLASLLSKIQYGGSVAVS  119 (167)
T ss_dssp             EEEEEESCC-THHHHHHHTTEEEEEEEEEC
T ss_pred             ceEEEecCc-HHHHHHHHHHhccCceEEEe
Confidence            999886654 45667899999999998864

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=92.37  E-value=0.28  Score=44.59  Aligned_cols=72  Identities=14%  Similarity=0.056  Sum_probs=48.6

Q ss_pred             CCEEEEECCCccHHHHHHHcc-----------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCC
Q psy7830         135 GSRVLDIGSGQGYMATAKEWL-----------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGP  203 (364)
Q Consensus       135 g~~VLDiGcGsG~~a~~la~~-----------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~  203 (364)
                      ...|+|+|+|+|.++..+...           +++.+|.|+.+.+.-++++..       ..++..+ .+....+   ..
T Consensus        80 ~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~-------~~~i~w~-~~~~~~~---~~  148 (365)
T d1zkda1          80 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG-------IRNIHWH-DSFEDVP---EG  148 (365)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT-------CSSEEEE-SSGGGSC---CS
T ss_pred             cceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc-------cccceec-cChhhcc---cC
Confidence            347999999999998766442           689999999987777666543       2356543 2333222   12


Q ss_pred             eeEEEEccChHHHH
Q psy7830         204 YDVIFFGAGTTEVS  217 (364)
Q Consensus       204 fD~Ii~~~~~~~l~  217 (364)
                      .-+|++|-.+..++
T Consensus       149 ~g~iiaNE~fDAlP  162 (365)
T d1zkda1         149 PAVILANEYFDVLP  162 (365)
T ss_dssp             SEEEEEESSGGGSC
T ss_pred             CeEEEecccCcccc
Confidence            35788888777655

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.10  E-value=0.61  Score=35.41  Aligned_cols=81  Identities=15%  Similarity=0.006  Sum_probs=52.2

Q ss_pred             CEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC----CCCCCee
Q psy7830         136 SRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH----AEGGPYD  205 (364)
Q Consensus       136 ~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~----~~~~~fD  205 (364)
                      |+|+=+|+  |.++..+++.      .|+.+|.+++.++.+++..           ++.++.+|..+..    ..-..+|
T Consensus         1 M~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-----------~~~vi~Gd~~~~~~l~~~~i~~a~   67 (132)
T d1lssa_           1 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-----------DALVINGDCTKIKTLEDAGIEDAD   67 (132)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----------SSEEEESCTTSHHHHHHTTTTTCS
T ss_pred             CEEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-----------hhhhccCcccchhhhhhcChhhhh
Confidence            56777776  5566555543      8999999999998776542           4668889986431    1124688


Q ss_pred             EEEEccChHH---HHHHHHhccCCCcE
Q psy7830         206 VIFFGAGTTE---VSKTILSQLKPNGR  229 (364)
Q Consensus       206 ~Ii~~~~~~~---l~~~l~~~LkpGG~  229 (364)
                      .+++...-..   +.....+.+.+.-.
T Consensus        68 ~vv~~t~~d~~N~~~~~~~k~~~~~~i   94 (132)
T d1lssa_          68 MYIAVTGKEEVNLMSSLLAKSYGINKT   94 (132)
T ss_dssp             EEEECCSCHHHHHHHHHHHHHTTCCCE
T ss_pred             hhcccCCcHHHHHHHHHHHHHcCCceE
Confidence            8887544332   33445566677633

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=91.55  E-value=0.46  Score=37.50  Aligned_cols=84  Identities=12%  Similarity=0.118  Sum_probs=51.4

Q ss_pred             CEEEEECCCc--cHHHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEcc
Q psy7830         136 SRVLDIGSGQ--GYMATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFGA  211 (364)
Q Consensus       136 ~~VLDiGcGs--G~~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~~  211 (364)
                      |+|.=||+|.  +.++..+.+.  +|+++|.+++.++.++++-           .+.....+...    -...|+|+...
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~-----------~~~~~~~~~~~----~~~~DiIilav   65 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQ-----------LVDEAGQDLSL----LQTAKIIFLCT   65 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-----------SCSEEESCGGG----GTTCSEEEECS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhh-----------ccceeeeeccc----ccccccccccC
Confidence            5788888874  2334444444  9999999998888776531           11112222211    24679999876


Q ss_pred             ChH---HHHHHHHhccCCCcEEEEEEc
Q psy7830         212 GTT---EVSKTILSQLKPNGRIVAPVG  235 (364)
Q Consensus       212 ~~~---~l~~~l~~~LkpGG~Lvi~~~  235 (364)
                      +..   .+++++...++++-.+ +.+.
T Consensus        66 p~~~~~~vl~~l~~~l~~~~iv-~~~~   91 (165)
T d2f1ka2          66 PIQLILPTLEKLIPHLSPTAIV-TDVA   91 (165)
T ss_dssp             CHHHHHHHHHHHGGGSCTTCEE-EECC
T ss_pred             cHhhhhhhhhhhhhhcccccce-eecc
Confidence            654   4567777777777655 4443

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=91.12  E-value=0.32  Score=44.25  Aligned_cols=98  Identities=12%  Similarity=0.035  Sum_probs=53.9

Q ss_pred             CEEEEECCCccHHHHHHHcc--------------------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCC--EEEEEcC
Q psy7830         136 SRVLDIGSGQGYMATAKEWL--------------------SSVRQLLLPETLNNSLKNIKISRPDLLQSKT--LEFILKD  193 (364)
Q Consensus       136 ~~VLDiGcGsG~~a~~la~~--------------------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~--v~~~~~D  193 (364)
                      .+|.|+||.+|..|+.+...                    +|.--|.-..=....=+.+....   -..++  +..+-+.
T Consensus        53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~---~~~~~~f~~gvpGS  129 (359)
T d1m6ex_          53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN---DVDGVCFINGVPGS  129 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC---SCTTCEEEEEEESC
T ss_pred             eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccc---cCCCCeEEEecCCc
Confidence            56899999999887543321                    44445543322222222221100   00112  2223344


Q ss_pred             CCCCCCCCCCeeEEEEccChHH---------------------------------------HHHHHHhccCCCcEEEEEE
Q psy7830         194 ARWGHAEGGPYDVIFFGAGTTE---------------------------------------VSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       194 ~~~~~~~~~~fD~Ii~~~~~~~---------------------------------------l~~~l~~~LkpGG~Lvi~~  234 (364)
                      ...-.++.++.|++++...+||                                       +++.=.+-|+|||+|++..
T Consensus       130 FY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~  209 (359)
T d1m6ex_         130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred             hhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence            4444455678888888766655                                       2334456789999999977


Q ss_pred             cC
Q psy7830         235 GN  236 (364)
Q Consensus       235 ~~  236 (364)
                      ..
T Consensus       210 ~g  211 (359)
T d1m6ex_         210 LG  211 (359)
T ss_dssp             EE
T ss_pred             ec
Confidence            44

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.92  E-value=0.28  Score=42.49  Aligned_cols=94  Identities=23%  Similarity=0.266  Sum_probs=64.1

Q ss_pred             CCEE-EEECCCccH---HHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC---------
Q psy7830         135 GSRV-LDIGSGQGY---MATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH---------  198 (364)
Q Consensus       135 g~~V-LDiGcGsG~---~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~---------  198 (364)
                      |++| |-=|+++|.   .+..+++.   +|+.++.+++.++.+.+.++...      .++.++.+|+.+..         
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dvs~~~sv~~~~~~~   75 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG------LSPRFHQLDIDDLQSIRALRDFL   75 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT------CCCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEEecCCHHHHHHHHHHH
Confidence            6777 445655553   22334432   89999999999999988887621      37889999986531         


Q ss_pred             -CCCCCeeEEEEccChH-------------------------HHHHHHHhccCCCcEEEEEE
Q psy7830         199 -AEGGPYDVIFFGAGTT-------------------------EVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       199 -~~~~~fD~Ii~~~~~~-------------------------~l~~~l~~~LkpGG~Lvi~~  234 (364)
                       ...+..|+++.|....                         .+.+.+...|+++|+++...
T Consensus        76 ~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis  137 (275)
T d1wmaa1          76 RKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  137 (275)
T ss_dssp             HHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             HHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence             1125799999886541                         13467788889999877543

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=90.02  E-value=0.15  Score=41.64  Aligned_cols=88  Identities=15%  Similarity=0.031  Sum_probs=56.2

Q ss_pred             CCCEEEEECCC--ccHHHHHHHcc---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCC--CCCCCCeeE
Q psy7830         134 NGSRVLDIGSG--QGYMATAKEWL---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWG--HAEGGPYDV  206 (364)
Q Consensus       134 ~g~~VLDiGcG--sG~~a~~la~~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~--~~~~~~fD~  206 (364)
                      ++.+||-.|+.  -|..++.+++.   +|+++.-+++..+.+++.-         .+.  ++.-+....  ......+|.
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lG---------ad~--vi~~~~~~~~~~l~~~~~~~   99 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLG---------ASR--VLPRDEFAESRPLEKQVWAG   99 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHT---------EEE--EEEGGGSSSCCSSCCCCEEE
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhc---------ccc--ccccccHHHHHHHHhhcCCe
Confidence            44578876633  34555666666   9999999999888776531         111  222221111  112356888


Q ss_pred             EEEccChHHHHHHHHhccCCCcEEEEE
Q psy7830         207 IFFGAGTTEVSKTILSQLKPNGRIVAP  233 (364)
Q Consensus       207 Ii~~~~~~~l~~~l~~~LkpGG~Lvi~  233 (364)
                      |+ +...........+.|+++|+++..
T Consensus       100 vv-D~Vgg~~~~~~l~~l~~~Griv~~  125 (177)
T d1o89a2         100 AI-DTVGDKVLAKVLAQMNYGGCVAAC  125 (177)
T ss_dssp             EE-ESSCHHHHHHHHHTEEEEEEEEEC
T ss_pred             eE-EEcchHHHHHHHHHhccccceEee
Confidence            75 556667788999999999999874

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.71  E-value=0.74  Score=36.32  Aligned_cols=86  Identities=16%  Similarity=0.152  Sum_probs=53.2

Q ss_pred             EEEEECCCc-c-HHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEEEc
Q psy7830         137 RVLDIGSGQ-G-YMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIFFG  210 (364)
Q Consensus       137 ~VLDiGcGs-G-~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii~~  210 (364)
                      +|+=||||. | .++..+.+.    +|+++|.+++.++.+++.-           .+.....+....  .....|+|+..
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~-----------~~~~~~~~~~~~--~~~~~dlIila   69 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG-----------IIDEGTTSIAKV--EDFSPDFVMLS   69 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT-----------SCSEEESCGGGG--GGTCCSEEEEC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhh-----------cchhhhhhhhhh--hcccccccccc
Confidence            588899985 2 233344433    7999999999998887642           121222222211  12357999988


Q ss_pred             cChHH---HHHHHHhccCCCcEEEEEEcC
Q psy7830         211 AGTTE---VSKTILSQLKPNGRIVAPVGN  236 (364)
Q Consensus       211 ~~~~~---l~~~l~~~LkpGG~Lvi~~~~  236 (364)
                      .+.+.   ++..+...++++.. ++.+..
T Consensus        70 ~p~~~~~~vl~~l~~~~~~~~i-i~d~~s   97 (171)
T d2g5ca2          70 SPVRTFREIAKKLSYILSEDAT-VTDQGS   97 (171)
T ss_dssp             SCHHHHHHHHHHHHHHSCTTCE-EEECCS
T ss_pred             CCchhhhhhhhhhhcccccccc-cccccc
Confidence            77654   56778888887654 444444

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.69  E-value=0.66  Score=39.70  Aligned_cols=76  Identities=17%  Similarity=0.011  Sum_probs=52.5

Q ss_pred             CCCEEEEECCCccHHH---HHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC----------
Q psy7830         134 NGSRVLDIGSGQGYMA---TAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH----------  198 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a---~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~----------  198 (364)
                      +|+.+|-.|+++|.-.   ..+++.  +|+.++.+++.++.+.+.+....    ...++.++.+|+.+..          
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~----~~~~~~~~~~Dls~~~~v~~~v~~~~   84 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAG----YPGTLIPYRCDLSNEEDILSMFSAIR   84 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT----CSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC----CCceEEEEEccCCCHHHHHHHHHHHH
Confidence            4778999998877433   333333  99999999999999888777611    0236888899987521          


Q ss_pred             CCCCCeeEEEEccCh
Q psy7830         199 AEGGPYDVIFFGAGT  213 (364)
Q Consensus       199 ~~~~~fD~Ii~~~~~  213 (364)
                      ...+..|+++.|...
T Consensus        85 ~~~g~iD~lVnnAg~   99 (257)
T d1xg5a_          85 SQHSGVDICINNAGL   99 (257)
T ss_dssp             HHHCCCSEEEECCCC
T ss_pred             HhcCCCCEEEecccc
Confidence            112578998877543

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=87.72  E-value=0.9  Score=38.82  Aligned_cols=73  Identities=19%  Similarity=0.144  Sum_probs=51.8

Q ss_pred             CCCEEEEECCCccH---HHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC----------
Q psy7830         134 NGSRVLDIGSGQGY---MATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH----------  198 (364)
Q Consensus       134 ~g~~VLDiGcGsG~---~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~----------  198 (364)
                      .|+.+|--|.++|.   .+..+++.  +|+.+|.+++.++.+.+.+...     + .++.++.+|+.+..          
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~-----g-~~~~~~~~Dv~~~~~v~~~~~~~~   77 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK-----G-VEARSYVCDVTSEEAVIGTVDSVV   77 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-----T-SCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-----C-CcEEEEEccCCCHHHHHHHHHHHH
Confidence            57889988877664   23344444  9999999999999988887662     1 37888999986421          


Q ss_pred             CCCCCeeEEEEccC
Q psy7830         199 AEGGPYDVIFFGAG  212 (364)
Q Consensus       199 ~~~~~fD~Ii~~~~  212 (364)
                      ...+..|+++.|..
T Consensus        78 ~~~g~iDilVnnaG   91 (260)
T d1zema1          78 RDFGKIDFLFNNAG   91 (260)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HHhCCCCeehhhhc
Confidence            11257899887644

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=84.33  E-value=1.9  Score=36.47  Aligned_cols=73  Identities=15%  Similarity=0.124  Sum_probs=51.6

Q ss_pred             CCCEEEEECCCccHHHHHHHc----c--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC---------
Q psy7830         134 NGSRVLDIGSGQGYMATAKEW----L--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH---------  198 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la~----~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~---------  198 (364)
                      .++.+|--|+++| ++..+++    .  +|+.+|.+++.++.+.+.++.     .+ .++.++.+|+.+..         
T Consensus         9 enKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~-----~g-~~~~~~~~Dvt~~~~v~~~~~~~   81 (251)
T d2c07a1           9 ENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKS-----FG-YESSGYAGDVSKKEEISEVINKI   81 (251)
T ss_dssp             SSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHT-----TT-CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh-----cC-CcEEEEEccCCCHHHHHHHHHHH
Confidence            4677888887666 4444433    3  999999999999998888866     22 37888999987521         


Q ss_pred             -CCCCCeeEEEEccCh
Q psy7830         199 -AEGGPYDVIFFGAGT  213 (364)
Q Consensus       199 -~~~~~fD~Ii~~~~~  213 (364)
                       ...+..|+++.|...
T Consensus        82 ~~~~g~iDilvnnag~   97 (251)
T d2c07a1          82 LTEHKNVDILVNNAGI   97 (251)
T ss_dssp             HHHCSCCCEEEECCCC
T ss_pred             HHhcCCceeeeecccc
Confidence             123678998887553

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=83.65  E-value=1.7  Score=36.62  Aligned_cols=69  Identities=16%  Similarity=0.100  Sum_probs=47.7

Q ss_pred             CCCEEEEECCCccHHHHHHH----cc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC---------
Q psy7830         134 NGSRVLDIGSGQGYMATAKE----WL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH---------  198 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~la----~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~---------  198 (364)
                      .|+.+|--|+++|. +..++    +.  +|+.+|.+++.++...+.+..         +..++..|..+..         
T Consensus         3 ~gK~alITGas~GI-G~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~---------~~~~~~~Dv~~~~~v~~~~~~~   72 (243)
T d1q7ba_           3 EGKIALVTGASRGI-GRAIAETLAARGAKVIGTATSENGAQAISDYLGA---------NGKGLMLNVTDPASIESVLEKI   72 (243)
T ss_dssp             TTCEEEESSCSSHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG---------GEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCC---------CCcEEEEEecCHHHhhhhhhhh
Confidence            47788888877663 44333    33  999999999988887766543         6777888976421         


Q ss_pred             -CCCCCeeEEEEccC
Q psy7830         199 -AEGGPYDVIFFGAG  212 (364)
Q Consensus       199 -~~~~~fD~Ii~~~~  212 (364)
                       ...+..|+++.|..
T Consensus        73 ~~~~g~iDilVnnAg   87 (243)
T d1q7ba_          73 RAEFGEVDILVNNAG   87 (243)
T ss_dssp             HHHTCSCSEEEECCC
T ss_pred             hcccCCcceehhhhh
Confidence             11357899887754

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=83.44  E-value=1.9  Score=36.77  Aligned_cols=95  Identities=18%  Similarity=0.211  Sum_probs=62.3

Q ss_pred             CCCEEEEECCCccH---HHHHHHcc--eEEEEeCC-HHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC---------
Q psy7830         134 NGSRVLDIGSGQGY---MATAKEWL--SSVRQLLL-PETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH---------  198 (364)
Q Consensus       134 ~g~~VLDiGcGsG~---~a~~la~~--~V~~vDis-~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~---------  198 (364)
                      .|+.+|--|+++|+   ++..+++.  +|+.+|.+ ++.++.+.+.+....      .++.++.+|..+..         
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g------~~~~~~~~D~~~~~~v~~~~~~~   90 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG------SDAACVKANVGVVEDIVRMFEEA   90 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhC------CceeeEeCCCCCHHHHHHHHHHH
Confidence            57889999987764   33444444  89888876 566777666666522      37888999986521         


Q ss_pred             -CCCCCeeEEEEccChH-------------------------HHHHHHHhccCCCcEEEEEE
Q psy7830         199 -AEGGPYDVIFFGAGTT-------------------------EVSKTILSQLKPNGRIVAPV  234 (364)
Q Consensus       199 -~~~~~fD~Ii~~~~~~-------------------------~l~~~l~~~LkpGG~Lvi~~  234 (364)
                       ...+..|+++.|....                         .+.+.+.+.|+.+|.+++..
T Consensus        91 ~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~  152 (272)
T d1g0oa_          91 VKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  152 (272)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             HHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence             1125689888765431                         03467777888877766543

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=82.33  E-value=2.4  Score=35.80  Aligned_cols=75  Identities=17%  Similarity=0.085  Sum_probs=50.8

Q ss_pred             CCCEEEEECCCccH---HHHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC----------
Q psy7830         134 NGSRVLDIGSGQGY---MATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH----------  198 (364)
Q Consensus       134 ~g~~VLDiGcGsG~---~a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~----------  198 (364)
                      .|+.+|--|++.|.   .+..+++.  +|+.+|.+++.++.+.+.+.+.    .+ .++.++.+|+.+..          
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~----~g-~~~~~~~~Dv~~~~~v~~~~~~~~   78 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEK----YG-VETMAFRCDVSNYEEVKKLLEAVK   78 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH----HC-CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH----hC-CcEEEEEccCCCHHHHHHHHHHHH
Confidence            57889999987764   23344444  9999999998888777665441    11 36888899986421          


Q ss_pred             CCCCCeeEEEEccCh
Q psy7830         199 AEGGPYDVIFFGAGT  213 (364)
Q Consensus       199 ~~~~~fD~Ii~~~~~  213 (364)
                      ...+..|+++.|...
T Consensus        79 ~~~g~iDiLVnnAG~   93 (251)
T d1vl8a_          79 EKFGKLDTVVNAAGI   93 (251)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCCC
Confidence            112578999887543

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=82.28  E-value=2  Score=32.06  Aligned_cols=84  Identities=10%  Similarity=-0.036  Sum_probs=56.1

Q ss_pred             CCccHHHHHHHcc----eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC----CCCCCeeEEEEccChH
Q psy7830         143 SGQGYMATAKEWL----SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH----AEGGPYDVIFFGAGTT  214 (364)
Q Consensus       143 cGsG~~a~~la~~----~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~----~~~~~fD~Ii~~~~~~  214 (364)
                      ||.|..+..+++.    .|+.+|.++...+..+.            .++.++.+|..+..    ..-...+.+++...-.
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~------------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d   73 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR------------SGANFVHGDPTRVSDLEKANVRGARAVIVNLESD   73 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH------------TTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSH
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh------------cCccccccccCCHHHHHHhhhhcCcEEEEeccch
Confidence            5667788777776    88899999998776543            25788999986421    1124677777754432


Q ss_pred             H---HHHHHHhccCCCcEEEEEEcCCC
Q psy7830         215 E---VSKTILSQLKPNGRIVAPVGNVW  238 (364)
Q Consensus       215 ~---l~~~l~~~LkpGG~Lvi~~~~~~  238 (364)
                      .   ..-...+.+.|...++..+.+..
T Consensus        74 ~~n~~~~~~~r~~~~~~~iia~~~~~~  100 (129)
T d2fy8a1          74 SETIHCILGIRKIDESVRIIAEAERYE  100 (129)
T ss_dssp             HHHHHHHHHHHHHCSSSCEEEECSSGG
T ss_pred             hhhHHHHHHHHHHCCCceEEEEEcCHH
Confidence            2   33455667888888887766543

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=82.21  E-value=1  Score=41.32  Aligned_cols=46  Identities=9%  Similarity=-0.012  Sum_probs=39.2

Q ss_pred             CCCCCEEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhc
Q psy7830         132 LQNGSRVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKIS  177 (364)
Q Consensus       132 l~~g~~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~  177 (364)
                      +.++..++|+|+-.|..+..++..      +|+++|.++...+..++|+..+
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n  261 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRY  261 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHT
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence            457789999999999888766543      8999999999999999998763

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=81.45  E-value=2.3  Score=32.77  Aligned_cols=91  Identities=13%  Similarity=0.035  Sum_probs=55.9

Q ss_pred             EEEEECCCccHHHHHHHcc------eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC----CCCCCeeE
Q psy7830         137 RVLDIGSGQGYMATAKEWL------SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH----AEGGPYDV  206 (364)
Q Consensus       137 ~VLDiGcGsG~~a~~la~~------~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~----~~~~~fD~  206 (364)
                      .|+=+|+  |..+..+++.      .|+.+|.+++......+....        .++.++.+|..+..    ..-...|.
T Consensus         5 HiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~--------~~~~vi~Gd~~d~~~L~~a~i~~a~~   74 (153)
T d1id1a_           5 HFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG--------DNADVIPGDSNDSSVLKKAGIDRCRA   74 (153)
T ss_dssp             CEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC--------TTCEEEESCTTSHHHHHHHTTTTCSE
T ss_pred             EEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc--------CCcEEEEccCcchHHHHHhccccCCE
Confidence            4555555  5566555543      899999998765444333322        36889999986531    11246788


Q ss_pred             EEEccChHH---HHHHHHhccCCCcEEEEEEcCC
Q psy7830         207 IFFGAGTTE---VSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       207 Ii~~~~~~~---l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      |++...-..   +.....+.+.|.-.++..+.+.
T Consensus        75 vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~  108 (153)
T d1id1a_          75 ILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDS  108 (153)
T ss_dssp             EEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSG
T ss_pred             EEEccccHHHHHHHHHHHHHhCCCCceEEEEcCH
Confidence            887554332   3344556677888888776554

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=81.29  E-value=1.5  Score=37.27  Aligned_cols=70  Identities=14%  Similarity=0.094  Sum_probs=47.4

Q ss_pred             CCCEEEEECCCccHHHHHH----Hcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC---------
Q psy7830         134 NGSRVLDIGSGQGYMATAK----EWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH---------  198 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~a~~l----a~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~---------  198 (364)
                      .|+.+|--|+++| ++..+    ++.  +|+.+|.+++.++.+.+.+.         .+..++.+|+.+..         
T Consensus         5 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~~~~~~~~~   74 (253)
T d1hxha_           5 QGKVALVTGGASG-VGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG---------ERSMFVRHDVSSEADWTLVMAAV   74 (253)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC---------TTEEEECCCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---------CCeEEEEeecCCHHHHHHHHHHH
Confidence            5778888887666 43333    333  99999999988887766552         26777888876421         


Q ss_pred             -CCCCCeeEEEEccCh
Q psy7830         199 -AEGGPYDVIFFGAGT  213 (364)
Q Consensus       199 -~~~~~fD~Ii~~~~~  213 (364)
                       ...+..|+++.|...
T Consensus        75 ~~~~g~iDilVnnAG~   90 (253)
T d1hxha_          75 QRRLGTLNVLVNNAGI   90 (253)
T ss_dssp             HHHHCSCCEEEECCCC
T ss_pred             HHHhCCCCeEEecccc
Confidence             112578999887653

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=80.22  E-value=8.3  Score=29.32  Aligned_cols=83  Identities=18%  Similarity=0.101  Sum_probs=51.8

Q ss_pred             CEEEEECCCccHHHHHHHc----c---eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCCCCCCCeeEEE
Q psy7830         136 SRVLDIGSGQGYMATAKEW----L---SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGHAEGGPYDVIF  208 (364)
Q Consensus       136 ~~VLDiGcGsG~~a~~la~----~---~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~~~~~~fD~Ii  208 (364)
                      ++|.=||||.  ++..+++    .   +|+..|.+++.++..++..           .+... .|...    -...|+|+
T Consensus         1 MkI~fIG~G~--MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~-----------~~~~~-~~~~~----v~~~Div~   62 (152)
T d1yqga2           1 MNVYFLGGGN--MAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL-----------GVETS-ATLPE----LHSDDVLI   62 (152)
T ss_dssp             CEEEEECCSH--HHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT-----------CCEEE-SSCCC----CCTTSEEE
T ss_pred             CEEEEEcCcH--HHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhc-----------ccccc-ccccc----ccccceEE
Confidence            4677888875  3333332    2   8999999998877765542           23322 22222    13469988


Q ss_pred             EccChHHHHHHHHhccCCCcEEEEEEcCC
Q psy7830         209 FGAGTTEVSKTILSQLKPNGRIVAPVGNV  237 (364)
Q Consensus       209 ~~~~~~~l~~~l~~~LkpGG~Lvi~~~~~  237 (364)
                      .... +.....+.+.+++.+.+++++...
T Consensus        63 lavk-P~~~~~v~~~l~~~~~~viS~~ag   90 (152)
T d1yqga2          63 LAVK-PQDMEAACKNIRTNGALVLSVAAG   90 (152)
T ss_dssp             ECSC-HHHHHHHHTTCCCTTCEEEECCTT
T ss_pred             EecC-HHHHHHhHHHHhhcccEEeecccC
Confidence            7654 344556667778888888887654

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=80.10  E-value=2.1  Score=36.14  Aligned_cols=73  Identities=16%  Similarity=0.134  Sum_probs=50.0

Q ss_pred             CCCEEEEECCCccHH---HHHHHcc--eEEEEeCCHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCCC----------
Q psy7830         134 NGSRVLDIGSGQGYM---ATAKEWL--SSVRQLLLPETLNNSLKNIKISRPDLLQSKTLEFILKDARWGH----------  198 (364)
Q Consensus       134 ~g~~VLDiGcGsG~~---a~~la~~--~V~~vDis~~~l~~a~~~~~~~~~~~l~~~~v~~~~~D~~~~~----------  198 (364)
                      .|+.+|--|+++|.-   +..+++.  +|+.+|.+++.++.+.+.+..       ..++.++.+|+.+..          
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~~~~   77 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT-------PDQIQFFQHDSSDEDGWTKLFDATE   77 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-------TTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC-------CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            477888888666532   2333333  999999999988888777643       247889999987531          


Q ss_pred             CCCCCeeEEEEccCh
Q psy7830         199 AEGGPYDVIFFGAGT  213 (364)
Q Consensus       199 ~~~~~fD~Ii~~~~~  213 (364)
                      ...+..|+++.|...
T Consensus        78 ~~~G~iDiLVnnAg~   92 (251)
T d1zk4a1          78 KAFGPVSTLVNNAGI   92 (251)
T ss_dssp             HHHSSCCEEEECCCC
T ss_pred             HHhCCceEEEecccc
Confidence            112578988877543