Psyllid ID: psy7837

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
MSHEKYPVLTLLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYNTPPPQMDLFDGLTPRLTY
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccEEEEccccccHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHccEEEEEEEcHHHHHHHHHHHHHccccccccccEEEEEccccccccccccccEEEEccccccccHHHHHcHHcccEEEEEEEcccccEEEEEEEEcccccEEEEEEccEEEEccccccHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHccccccEccHHHHHccccccccccccccccccHHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHcccccHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHHccEHHHHHHHHHHHHHHHHHccHHHcccccEEEEEccccccccccccccEEEEEcccccccHHHHHHcccccEEEEEEccccccEEEEEEEEcccccEEEEEccEEEEEEcccccccHHHccccccccccccEccccccccccc
Coil and Loop (DISEMBL)
mshekypvltlldiphnighnafmespsdypvltlldiphnighnafmespsdHCLVLELLSGhlkygdkvleigtgsgyLTTLFGAMvgisgkvytIEHIPELLEAARKRVKAKAETYIKRINFYGHLVygskvldigsgsGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVcadgrrgypdaapydviyiSQAIRDIPWHIVDQLKLGGRMlfikgheddIMTLELLDKfvngsvkttvihpHVYIHELKSLEDQKRmfhyyntpppqmdlfdgltprlty
Flexible Loop (DISEMBL)
MSHEKYPVLTLLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYNtpppqmdlfdgltprlty
Low Complexity Region (SEG)
MSHEKYPVLTLLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEaarkrvkakaETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYNTPPPQMDLFDGLTPRLTY
Disordered region (IsUnstruct)
*****YPVLTLLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYNT*****************
Disordered Region (DISOPRED)
******PVLTLLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK*ETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSL***********************T**L**
Disordered Region (DISEMBL)
MSHEKYPVLTLLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYNTPPPQMDLFDGLTPRLTY
Disordered Region (DISPRO)
****KYPVLTLLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYNTPPPQMDLFDGLTPRLTY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSHEKYPVLTLLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYNTPPPQMDLFDGLTPRLTY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	299	2.2.26 [Sep-21-2011]
P80895	227	Protein-L-isoaspartate(D-	yes	N/A	0.511	0.674	0.35	2e-21
Q5RA89	227	Protein-L-isoaspartate(D-	no	N/A	0.511	0.674	0.35	3e-21
Q4R5H0	227	Protein-L-isoaspartate(D-	N/A	N/A	0.511	0.674	0.35	3e-21
P15246	227	Protein-L-isoaspartate(D-	yes	N/A	0.508	0.669	0.352	3e-21
P22061	227	Protein-L-isoaspartate(D-	yes	N/A	0.511	0.674	0.343	4e-21
P23506	227	Protein-L-isoaspartate(D-	yes	N/A	0.511	0.674	0.343	1e-20
P22062	227	Protein-L-isoaspartate(D-	yes	N/A	0.511	0.674	0.337	3e-20
Q92047	228	Protein-L-isoaspartate(D-	yes	N/A	0.468	0.614	0.349	3e-20
Q5F3N1	228	Protein-L-isoaspartate(D-	no	N/A	0.474	0.622	0.342	2e-19
Q42539	230	Protein-L-isoaspartate O-	yes	N/A	0.525	0.682	0.296	2e-19

>sp|P80895|PIMT_PIG Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Sus scrofa GN=PCMT1 PE=1 SV=3

 Score =  103 bits (256), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 7/160 (4%)

Query: 125 FYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIA 181
            +  L  G+K LD+GSGSG L+A FA M     KV  I+H+K L   ++ N+R+  P + 
Sbjct: 72  LFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDPMLL 131

Query: 182 LAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMT 241
            +   + V  DGR GY + APYD I++  A   +P  ++DQLK GGR++   G       
Sbjct: 132 SSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQM 191

Query: 242 LELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYN 281
           LE  DK  +GSVK   +   +Y+     L D+++ +  + 
Sbjct: 192 LEQYDKLQDGSVKMKPLMGVIYV----PLTDKEKQWSRWK 227

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.
Sus scrofa (taxid: 9823)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 7EC: 7

>sp|Q5RA89|PIMT_PONAB Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Pongo abelii GN=PCMT1 PE=2 SV=3

 Score =  102 bits (255), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 7/160 (4%)

Query: 125 FYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIA 181
            +  L  G+K LD+GSGSG L+A FA M     KV  I+H+K L   ++ N+R+  P + 
Sbjct: 72  LFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINNVRKDDPTLL 131

Query: 182 LAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMT 241
            +   + V  DGR GY + APYD I++  A   +P  ++DQLK GGR++   G       
Sbjct: 132 SSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQM 191

Query: 242 LELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYN 281
           LE  DK  +GSVK   +   +Y+     L D+++ +  + 
Sbjct: 192 LEQYDKLQDGSVKMKPLMGVIYV----PLTDKEKQWSRWK 227

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q4R5H0|PIMT_MACFA Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Macaca fascicularis GN=PCMT1 PE=2 SV=3

 Score =  102 bits (255), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 7/160 (4%)

Query: 125 FYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIA 181
            +  L  G+K LD+GSGSG L+A FA M     KV  I+H+K L   ++ N+R+  P + 
Sbjct: 72  LFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINNVRKDDPTLL 131

Query: 182 LAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMT 241
            +   + V  DGR GY + APYD I++  A   +P  ++DQLK GGR++   G       
Sbjct: 132 SSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQM 191

Query: 242 LELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYN 281
           LE  DK  +GSVK   +   +Y+     L D+++ +  + 
Sbjct: 192 LEQYDKLQDGSVKMKPLMGVIYV----PLTDKEKQWSRWK 227

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Macaca fascicularis (taxid: 9541)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P15246|PIMT_BOVIN Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Bos taurus GN=PCMT1 PE=1 SV=2

 Score =  102 bits (254), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 85/159 (53%), Gaps = 7/159 (4%)

Query: 125 FYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIA 181
            +  L  G+K LD+GSGSG L+A FA M     KV  I+H+K L   ++ N+R+  P + 
Sbjct: 72  LFDQLNEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDPMLL 131

Query: 182 LAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMT 241
            +   + V  DGR GY   APYD I++  A   +P  ++DQLK GGR++   G       
Sbjct: 132 SSGRVQLVVGDGRMGYAAEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQM 191

Query: 242 LELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYY 280
           LE  DK  +GSVK   +   +Y+     L D+++ +  +
Sbjct: 192 LEQYDKLQDGSVKMKPLMGVIYV----PLTDKEKQWSRW 226

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P22061|PIMT_HUMAN Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Homo sapiens GN=PCMT1 PE=1 SV=4

 Score =  102 bits (253), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 86/160 (53%), Gaps = 7/160 (4%)

Query: 125 FYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIA 181
            +  L  G+K LD+GSGSG L+A FA M     KV  I+H+K L   ++ N+R+  P + 
Sbjct: 72  LFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLL 131

Query: 182 LAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMT 241
            +   + V  DGR GY + APYD I++  A   +P  ++DQLK GGR++   G       
Sbjct: 132 SSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQM 191

Query: 242 LELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYN 281
           LE  DK  +GS+K   +   +Y+     L D+++ +  + 
Sbjct: 192 LEQYDKLQDGSIKMKPLMGVIYV----PLTDKEKQWSRWK 227

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P23506|PIMT_MOUSE Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Mus musculus GN=Pcmt1 PE=1 SV=3

 Score =  100 bits (249), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 7/160 (4%)

Query: 125 FYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIA 181
            +  L  G+K LD+GSGSG L+A FA M     KV  I+H+K L   ++ N+++  P + 
Sbjct: 72  LFDQLHEGAKALDVGSGSGILTACFARMVGNSGKVIGIDHIKELVDDSITNVKKDDPMLL 131

Query: 182 LAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMT 241
            +     V  DGR GY + APYD I++  A   +P  ++DQLK GGR++   G       
Sbjct: 132 SSGRVRLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQM 191

Query: 242 LELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYN 281
           LE  DK  +GSVK   +   +Y+     L D+++ +  + 
Sbjct: 192 LEQYDKLQDGSVKMKPLMGVIYV----PLTDKEKQWSRWK 227

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P22062|PIMT_RAT Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Rattus norvegicus GN=Pcmt1 PE=1 SV=2

 Score = 99.4 bits (246), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 7/160 (4%)

Query: 125 FYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIA 181
            +  L  G+K LD+GSGSG L+A FA M     KV  I+H+K L   ++ N+++  P + 
Sbjct: 72  LFDQLHEGAKALDVGSGSGILTACFARMVGHSGKVIGIDHIKELVDDSITNVKKDDPMLL 131

Query: 182 LAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMT 241
            +     V  DGR G+ + APYD I++  A   +P  ++DQLK GGR++   G       
Sbjct: 132 SSGRVRLVVGDGRMGFAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQM 191

Query: 242 LELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYN 281
           LE  DK  +GSVK   +   +Y+     L D+++ +  + 
Sbjct: 192 LEQYDKLQDGSVKMKPLMGVIYV----PLTDKEKQWSRWK 227

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q92047|PIMT_DANRE Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Danio rerio GN=pcmt PE=2 SV=3

 Score = 99.4 bits (246), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 80/143 (55%), Gaps = 3/143 (2%)

Query: 125 FYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIA 181
            + HL  G+K LD+GSGSG LS  F+ M     KV  I+H+K L + ++ N+++  P++ 
Sbjct: 72  LHDHLYEGAKALDVGSGSGILSVCFSRMVGPTGKVIGIDHIKELVEDSIANVKKDDPSLI 131

Query: 182 LAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMT 241
            +   + +  DGR G+ + APYD I++  A   +P  ++DQLK GGR++   G       
Sbjct: 132 TSGRIKLIVGDGRMGFTEEAPYDAIHVGAAAPTVPQALLDQLKPGGRLILPVGPAGGNQM 191

Query: 242 LELLDKFVNGSVKTTVIHPHVYI 264
           LE  DK  +GS K   +   +Y+
Sbjct: 192 LEQYDKLEDGSTKMKPLMGVIYV 214

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q5F3N1|PIMT_CHICK Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Gallus gallus GN=PCMT1 PE=2 SV=3

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 83/149 (55%), Gaps = 7/149 (4%)

Query: 132 GSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
           G+K LD+GSGSG L+A F+ M     +V  I+H+K L   ++ N+++  P +  +   + 
Sbjct: 79  GAKALDVGSGSGILTACFSRMVGPKGQVVGIDHIKELVDDSINNVKKDDPTLLSSGRVKL 138

Query: 189 VCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKF 248
           +  DGR GY + APYD I++  A   +P  ++DQLK GGR++   G       LE  DK 
Sbjct: 139 IVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 198

Query: 249 VNGSVKTTVIHPHVYIHELKSLEDQKRMF 277
            +GSVK   +   +Y+     L D+++ +
Sbjct: 199 EDGSVKMKPLMGVIYV----PLTDKEKQW 223

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q42539|PIMT_ARATH Protein-L-isoaspartate O-methyltransferase OS=Arabidopsis thaliana GN=PCM PE=2 SV=3

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 102/219 (46%), Gaps = 62/219 (28%)

Query: 36  LDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKV 95
           +D P +IG+N  + +P  H + L+LL  HLK G +VL++G+G+GYLT  F  MVG  G+ 
Sbjct: 52  VDSPMSIGYNVTISAPHMHAMCLQLLEKHLKPGMRVLDVGSGTGYLTACFAVMVGTEGRA 111

Query: 96  YTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAK 155
             +EHIPEL+ ++ K ++A A +          L  GS  + +G G              
Sbjct: 112 IGVEHIPELVASSVKNIEASAASPF--------LKEGSLAVHVGDG-------------- 149

Query: 156 VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDI 215
                             R+G                    + + APYD I++  A  +I
Sbjct: 150 ------------------RQG--------------------WAEFAPYDAIHVGAAAPEI 171

Query: 216 PWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVK 254
           P  ++DQLK GGR++   G  +    L+++DK  +GSV 
Sbjct: 172 PEALIDQLKPGGRLVIPVG--NIFQDLQVVDKNSDGSVS 208

Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. This enzyme does not act on D-aspartyl residues.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
241566262	277	protein-L-isoaspartate(D-aspartate) O-me	0.678	0.732	0.290	4e-23
242014348	287	protein-L-isoaspartate O-methyltransfera	0.458	0.477	0.385	3e-21
326505628	230	predicted protein [Hordeum vulgare subsp	0.521	0.678	0.336	7e-21
351707525	336	Protein-L-isoaspartate(D-aspartate) O-me	0.511	0.455	0.356	8e-21
348561251	285	PREDICTED: protein-L-isoaspartate(D-aspa	0.511	0.536	0.356	1e-20
427781597	232	Putative protein-l-isoaspartated-asparta	0.458	0.590	0.378	2e-20
432112797	196	Protein-L-isoaspartate(D-aspartate) O-me	0.511	0.780	0.356	4e-20
326919840	248	PREDICTED: protein-L-isoaspartate(D-aspa	0.488	0.588	0.346	4e-20
91081355	227	PREDICTED: similar to L-isoaspartyl prot	0.454	0.599	0.395	5e-20
338722931	287	PREDICTED: protein-L-isoaspartate(D-aspa	0.511	0.533	0.35	5e-20

>gi|241566262|ref|XP_002402129.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase, putative [Ixodes scapularis] gi|215499989|gb|EEC09483.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase, putative [Ixodes scapularis]

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 118/258 (45%), Gaps = 55/258 (21%)

Query: 10  TLLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGD 69
           T L++  N+ HN  + S     V++ +D  H + HN +M+SP                  
Sbjct: 29  TNLELVRNLKHNGIIRSAKVEQVMSQVDRGHYVKHNPYMDSPQ----------------- 71

Query: 70  KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHL 129
                  G GY  T+                 P +   A + +K              HL
Sbjct: 72  -------GIGYAVTISA---------------PHMHAQALESLK-------------DHL 96

Query: 130 VYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENF 186
             G+K LD+GSGSGYL+   A M     +   I+H+  L  +++ NI +G PA+  ++  
Sbjct: 97  YEGAKALDVGSGSGYLTVCMALMVGETGRTIGIDHIPELVDQSIANIHKGHPALLDSKRL 156

Query: 187 EFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLD 246
             +  DGR GYP+ APYD I++  A  ++P  +++QLK GGR++   G      TLE +D
Sbjct: 157 RMIVGDGRVGYPEEAPYDAIHVGAAAPELPKQLIEQLKPGGRLICPVGPAGQSQTLEQVD 216

Query: 247 KFVNGSVKTTVIHPHVYI 264
           K  +G+VK T +   VY+
Sbjct: 217 KLQDGTVKRTSLMGVVYV 234

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242014348|ref|XP_002427853.1| protein-L-isoaspartate O-methyltransferase, putative [Pediculus humanus corporis] gi|212512322|gb|EEB15115.1| protein-L-isoaspartate O-methyltransferase, putative [Pediculus humanus corporis]

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 79/140 (56%), Gaps = 3/140 (2%)

Query: 128 HLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAE 184
           HL  G K LD+GSGSGYL+   A M     +   I+H+  L   + +N+R+  P +  + 
Sbjct: 75  HLTEGEKALDVGSGSGYLTVCMALMVGQEGRAVGIDHIAELIDTSTENVRKDKPELLDSG 134

Query: 185 NFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLEL 244
             +FV  DGRRGYPD  PY+ I++  A  ++P  ++DQLK GGR++   G E     LE 
Sbjct: 135 RVKFVVGDGRRGYPDDGPYNAIHVGAASPNLPQSLIDQLKPGGRLIVPIGPEGGNQNLEQ 194

Query: 245 LDKFVNGSVKTTVIHPHVYI 264
           +DK  +GS   T +   VY+
Sbjct: 195 IDKKADGSFTRTPLMGVVYV 214

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326505628|dbj|BAJ95485.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 103/220 (46%), Gaps = 64/220 (29%)

Query: 36  LDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKV 95
           +D P  IG+NA + +P  H   LELL  HL+ G   L++G+GSGYLT  F  MVG  G+ 
Sbjct: 52  IDSPMPIGYNATISAPHMHATCLELLKDHLQPGMHALDVGSGSGYLTACFAMMVGPEGRA 111

Query: 96  YTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAK 155
             IEHIPEL+ A+ + V+  A                +K+L  GS S ++S         
Sbjct: 112 VGIEHIPELVAASTENVERSA---------------AAKLLKDGSLSFHVS--------- 147

Query: 156 VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDI 215
                                               DGR G+PDAAPYD I++  A  +I
Sbjct: 148 ------------------------------------DGRLGWPDAAPYDAIHVGAAAPEI 171

Query: 216 PWHIVDQLKLGGRMLFIKG-HEDDIMTLELLDKFVNGSVK 254
           P  +++QLK GGRM+   G +  D   L+++DK  NGS  
Sbjct: 172 PRPLLEQLKPGGRMVIPVGTYSQD---LQVIDKSANGSTS 208

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351707525|gb|EHB10444.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Heterocephalus glaber]

 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 87/160 (54%), Gaps = 7/160 (4%)

Query: 125 FYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIA 181
            +  L  G+K LD+GSGSG L+A FA M     KV  I+H+K L   ++ N+R+  P + 
Sbjct: 181 LFDQLHEGAKALDVGSGSGILTACFARMVGCNGKVIGIDHIKELVDDSINNVRKDDPTLL 240

Query: 182 LAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMT 241
            +   + V  DGR GYP+ APYD I++  A   +P  ++DQLK GGR++   G       
Sbjct: 241 SSGRVQLVVGDGRMGYPEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQM 300

Query: 242 LELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYN 281
           LE  DK  +GSVK   +   +Y+     L D+++ +  + 
Sbjct: 301 LEQYDKLQDGSVKMKPLMGVIYV----PLTDKEKQWSRWK 336

Source: Heterocephalus glaber

Species: Heterocephalus glaber

Genus: Heterocephalus

Family: Bathyergidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348561251|ref|XP_003466426.1| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like [Cavia porcellus]

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 87/160 (54%), Gaps = 7/160 (4%)

Query: 125 FYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIA 181
            +  L  G+K LD+GSGSG L+A FA M     KV  I+H+K L   ++ N+R+  P + 
Sbjct: 130 LFDQLHEGAKALDVGSGSGILTACFARMVGCSGKVIGIDHIKELVDDSINNVRKDDPTLL 189

Query: 182 LAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMT 241
            +   + V  DGR GYP+ APYD I++  A   +P  ++DQLK GGR++   G       
Sbjct: 190 TSGRVQLVVGDGRLGYPEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQM 249

Query: 242 LELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYN 281
           LE  DK  +GSVK   +   +Y+     L D+++ +  + 
Sbjct: 250 LEQYDKLQDGSVKMKPLMGVIYV----PLTDKEKQWSRWK 285

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|427781597|gb|JAA56250.1| Putative protein-l-isoaspartated-aspartate o-methyltransferase [Rhipicephalus pulchellus]

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 81/140 (57%), Gaps = 3/140 (2%)

Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGAKV---YAIEHVKNLCKRAMKNIRRGAPAIALAE 184
           HL  G++ LD+GSGSGYL+A    M  +      I+H+  L   ++ NI R  P +  ++
Sbjct: 75  HLKEGARALDVGSGSGYLTACMGLMVGETGLAVGIDHIPELVNESIANIERDQPQLLKSK 134

Query: 185 NFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLEL 244
             + +  DGR GYP+ APYD I++  A  D+P  +V+QLK GGR++   G      TLE 
Sbjct: 135 RVKMIVGDGREGYPEHAPYDAIHVGAAAPDMPKKLVEQLKPGGRLICPVGPAGASQTLEQ 194

Query: 245 LDKFVNGSVKTTVIHPHVYI 264
           +DK  +G+V+ T +   VY+
Sbjct: 195 VDKLEDGTVRRTSLMGVVYV 214

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432112797|gb|ELK35395.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Myotis davidii]

 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 7/160 (4%)

Query: 125 FYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIA 181
            +  L  G+K LD+GSGSG LSA FA M     KV  I+H+K L   ++ N+R+  P + 
Sbjct: 41  LFDQLHEGAKALDVGSGSGILSACFARMVGASGKVVGIDHIKELVDDSINNVRKDDPTLL 100

Query: 182 LAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMT 241
            +   + V  DGR GY + APYD I++  A   +P  ++DQLK GGR++   G       
Sbjct: 101 SSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQM 160

Query: 242 LELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYN 281
           LE  DK  +GSVK   +   +Y+     L D+++ +  + 
Sbjct: 161 LEQYDKLQDGSVKMKPLMGVIYV----PLTDKEKQWSRWK 196

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326919840|ref|XP_003206185.1| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like [Meleagris gallopavo] gi|363734030|ref|XP_420939.3| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase [Gallus gallus]

 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 86/153 (56%), Gaps = 7/153 (4%)

Query: 128 HLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAE 184
            LV G+K LD+GSGSGYL+A FA M     K   +EH+K L   +++N++   P +  + 
Sbjct: 95  QLVEGAKALDVGSGSGYLTACFARMVGPTGKAVGVEHIKELVNESIRNVKEDDPTLLSSG 154

Query: 185 NFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLEL 244
             + V  DGR+GYP+ APYD I++  A   +P  ++++LK GGR++   G E     L  
Sbjct: 155 RVKLVVGDGRQGYPEEAPYDAIHVGAAAPTVPQELLNELKPGGRLILPVGPEGANQVLMQ 214

Query: 245 LDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMF 277
            DK  +G +  T +   +Y+     L D+++ +
Sbjct: 215 YDKTSDGQIIETQLMGVIYV----PLTDKEKQW 243

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|91081355|ref|XP_971086.1| PREDICTED: similar to L-isoaspartyl protein carboxyl methyltransferase [Tribolium castaneum] gi|270005191|gb|EFA01639.1| hypothetical protein TcasGA2_TC007209 [Tribolium castaneum]

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/139 (39%), Positives = 82/139 (58%), Gaps = 3/139 (2%)

Query: 129 LVYGSKVLDIGSGSGYLSALFAYM-GAKVYA--IEHVKNLCKRAMKNIRRGAPAIALAEN 185
           L+ G++ LD+GSGSGYL+A  A M G K  A  I+H+  L + ++KNI R  P +  +  
Sbjct: 76  LLNGNRALDVGSGSGYLTACMAIMLGEKGIAVGIDHMPELVEMSIKNIERDQPELLQSGQ 135

Query: 186 FEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELL 245
              +  DGR+GYPD  PYD I++  A   +P  +VDQLK+GGR++   G       LE +
Sbjct: 136 LRLLLGDGRQGYPDLGPYDAIHVGAAAPTLPQPLVDQLKVGGRLIIPVGPAGGDQQLEQI 195

Query: 246 DKFVNGSVKTTVIHPHVYI 264
           DK  +GS++   +   VY+
Sbjct: 196 DKLPDGSIQRKSLMGVVYV 214

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|338722931|ref|XP_003364625.1| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like isoform 2 [Equus caballus]

 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 87/160 (54%), Gaps = 7/160 (4%)

Query: 125 FYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIA 181
            +  L  G+K LD+GSGSG L+A FA M     KV  I+H+K L   ++ N+R+  P + 
Sbjct: 132 LFDQLHEGAKALDVGSGSGILTACFARMVGPTGKVVGIDHIKELVDDSINNVRKDDPMLL 191

Query: 182 LAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMT 241
            +   + V  DGR GYP+ APYD I++  A   +P  ++DQLK GGR++   G       
Sbjct: 192 SSGRVQLVVGDGRMGYPEEAPYDAIHVGAAAPVVPQALLDQLKPGGRLILPVGPAGGNQM 251

Query: 242 LELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYN 281
           LE  DK  +GS+K   +   +Y+     L D+++ +  + 
Sbjct: 252 LEQYDKLQDGSIKMKPLMGVIYV----PLTDKEKQWSRWK 287

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
UNIPROTKB|E1BXJ0	228	LOC423008 "Protein-L-isoaspart	0.454	0.596	0.374	7e-22
WB|WBGene00003954	225	pcm-1 [Caenorhabditis elegans	0.481	0.64	0.355	7.6e-22
UNIPROTKB|E2R3G3	286	PCMT1 "Protein-L-isoaspartate	0.464	0.486	0.387	1.5e-21
UNIPROTKB|J9JIK8	208	PCMT1 "Protein-L-isoaspartate	0.464	0.668	0.380	1.9e-21
UNIPROTKB|P80895	227	PCMT1 "Protein-L-isoaspartate(	0.464	0.612	0.380	1.9e-21
UNIPROTKB|H7BY58	286	PCMT1 "Protein-L-isoaspartate	0.464	0.486	0.380	2.4e-21
UNIPROTKB|J3KP72	285	PCMT1 "Protein-L-isoaspartate	0.464	0.487	0.380	2.4e-21
UNIPROTKB|P22061	227	PCMT1 "Protein-L-isoaspartate(	0.464	0.612	0.380	2.4e-21
UNIPROTKB|B7Z972	192	PCMT1 "Protein-L-isoaspartate	0.464	0.723	0.380	2.4e-21
ZFIN|ZDB-GENE-990415-134	266	pcmt "l-isoaspartyl protein ca	0.464	0.522	0.359	4.9e-21

UNIPROTKB|E1BXJ0 LOC423008 "Protein-L-isoaspartate O-methyltransferase" [Gallus gallus (taxid:9031)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 52/139 (37%), Positives = 81/139 (58%)

Query:   129 LVYGSKVLDIGSGSGYLSALFAYM-G--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAEN 185
             LV G+K LD+GSGSGYL+A FA M G   K   +EH+K L   +++N++   P +  +  
Sbjct:    76 LVEGAKALDVGSGSGYLTACFARMVGPTGKAVGVEHIKELVNESIRNVKEDDPTLLSSGR 135

Query:   186 FEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELL 245
              + V  DGR+GYP+ APYD I++  A   +P  ++++LK GGR++   G E     L   
Sbjct:   136 VKLVVGDGRQGYPEEAPYDAIHVGAAAPTVPQELLNELKPGGRLILPVGPEGANQVLMQY 195

Query:   246 DKFVNGSVKTTVIHPHVYI 264
             DK  +G +  T +   +Y+
Sbjct:   196 DKTSDGQIIETQLMGVIYV 214

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

WB|WBGene00003954 pcm-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 228 (85.3 bits), Expect = 7.6e-22, Sum P(2) = 7.6e-22
 Identities = 53/149 (35%), Positives = 81/149 (54%)

Query:   128 HLVYGSKVLDIGSGSGYLSALFAYMGAK---VYAIEHVKNLCKRAMKNIRRGAPAIALAE 184
             HLV G+K LD+GSGSGYL+   A M  +   V  IEH+  L + + KNIR+         
Sbjct:    75 HLVAGAKALDVGSGSGYLTVCMAMMVGRNGTVVGIEHMPQLVELSEKNIRKHHSEQLERG 134

Query:   185 NFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLEL 244
             N   +  DGR+G+ + APY+ I++  A + +P  + DQL  GGRM+      D       
Sbjct:   135 NVIIIEGDGRQGFAEKAPYNAIHVGAASKGVPKALTDQLAEGGRMMIPVEQVDGNQVFMQ 194

Query:   245 LDKFVNGSVKTTVIHPHVYIHELKSLEDQ 273
             +DK +NG ++  ++   +Y+  L S E+Q
Sbjct:   195 IDK-INGKIEQKIVEHVIYV-PLTSREEQ 221

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006479 "protein methylation" evidence=IEA;IDA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA;IDA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0006400 "tRNA modification" evidence=IEA

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008276 "protein methyltransferase activity" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0018197 "peptidyl-aspartic acid modification" evidence=IDA

GO:0033555 "multicellular organismal response to stress" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0042594 "response to starvation" evidence=IMP

GO:0010506 "regulation of autophagy" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

UNIPROTKB|E2R3G3 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Canis lupus familiaris (taxid:9615)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 55/142 (38%), Positives = 81/142 (57%)

Query:   126 YGHLVYGSKVLDIGSGSGYLSALFAYM-GA--KVYAIEHVKNLCKRAMKNIRRGAPAIAL 182
             +  L  G+K LD+GSGSG L+A FA M G+  KV  I+H+K L   ++ N+R+  P +  
Sbjct:   131 FDQLHEGAKALDVGSGSGILTACFARMVGSSGKVIGIDHIKELVDDSINNVRKDDPVLLS 190

Query:   183 AENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTL 242
             +   + V  DGR GY + APYD I++  A   +P  ++DQLK GGR++   G       L
Sbjct:   191 SGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQML 250

Query:   243 ELLDKFVNGSVKTTVIHPHVYI 264
             E  DK  +GSVK   +   +Y+
Sbjct:   251 EQYDKLQDGSVKMKPLMGVIYV 272

GO:0005737 "cytoplasm" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

UNIPROTKB|J9JIK8 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Sus scrofa (taxid:9823)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 54/142 (38%), Positives = 79/142 (55%)

Query:   126 YGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIAL 182
             +  L  G+K LD+GSGSG L+A FA M     KV  I+H+K L   ++ N+R+  P +  
Sbjct:    54 FDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDPMLLS 113

Query:   183 AENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTL 242
             +   + V  DGR GY + APYD I++  A   +P  ++DQLK GGR++   G       L
Sbjct:   114 SGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQML 173

Query:   243 ELLDKFVNGSVKTTVIHPHVYI 264
             E  DK  +GSVK   +   +Y+
Sbjct:   174 EQYDKLQDGSVKMKPLMGVIYV 195

GO:0005737 "cytoplasm" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

UNIPROTKB|P80895 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Sus scrofa (taxid:9823)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 54/142 (38%), Positives = 79/142 (55%)

Query:   126 YGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIAL 182
             +  L  G+K LD+GSGSG L+A FA M     KV  I+H+K L   ++ N+R+  P +  
Sbjct:    73 FDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDPMLLS 132

Query:   183 AENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTL 242
             +   + V  DGR GY + APYD I++  A   +P  ++DQLK GGR++   G       L
Sbjct:   133 SGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQML 192

Query:   243 ELLDKFVNGSVKTTVIHPHVYI 264
             E  DK  +GSVK   +   +Y+
Sbjct:   193 EQYDKLQDGSVKMKPLMGVIYV 214

GO:0005737 "cytoplasm" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

UNIPROTKB|H7BY58 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 54/142 (38%), Positives = 80/142 (56%)

Query:   126 YGHLVYGSKVLDIGSGSGYLSALFAYM-GA--KVYAIEHVKNLCKRAMKNIRRGAPAIAL 182
             +  L  G+K LD+GSGSG L+A FA M G   KV  I+H+K L   ++ N+R+  P +  
Sbjct:   131 FDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLS 190

Query:   183 AENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTL 242
             +   + V  DGR GY + APYD I++  A   +P  ++DQLK GGR++   G       L
Sbjct:   191 SGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQML 250

Query:   243 ELLDKFVNGSVKTTVIHPHVYI 264
             E  DK  +GS+K   +   +Y+
Sbjct:   251 EQYDKLQDGSIKMKPLMGVIYV 272

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|J3KP72 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 54/142 (38%), Positives = 80/142 (56%)

Query:   126 YGHLVYGSKVLDIGSGSGYLSALFAYM-GA--KVYAIEHVKNLCKRAMKNIRRGAPAIAL 182
             +  L  G+K LD+GSGSG L+A FA M G   KV  I+H+K L   ++ N+R+  P +  
Sbjct:   131 FDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLS 190

Query:   183 AENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTL 242
             +   + V  DGR GY + APYD I++  A   +P  ++DQLK GGR++   G       L
Sbjct:   191 SGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQML 250

Query:   243 ELLDKFVNGSVKTTVIHPHVYI 264
             E  DK  +GS+K   +   +Y+
Sbjct:   251 EQYDKLQDGSIKMKPLMGVIYV 272

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0046498 "S-adenosylhomocysteine metabolic process" evidence=IEA

GO:0046500 "S-adenosylmethionine metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|P22061 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 54/142 (38%), Positives = 80/142 (56%)

Query:   126 YGHLVYGSKVLDIGSGSGYLSALFAYM-GA--KVYAIEHVKNLCKRAMKNIRRGAPAIAL 182
             +  L  G+K LD+GSGSG L+A FA M G   KV  I+H+K L   ++ N+R+  P +  
Sbjct:    73 FDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLS 132

Query:   183 AENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTL 242
             +   + V  DGR GY + APYD I++  A   +P  ++DQLK GGR++   G       L
Sbjct:   133 SGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQML 192

Query:   243 ELLDKFVNGSVKTTVIHPHVYI 264
             E  DK  +GS+K   +   +Y+
Sbjct:   193 EQYDKLQDGSIKMKPLMGVIYV 214

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=TAS

GO:0030091 "protein repair" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0006479 "protein methylation" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|B7Z972 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 54/142 (38%), Positives = 80/142 (56%)

Query:   126 YGHLVYGSKVLDIGSGSGYLSALFAYM-GA--KVYAIEHVKNLCKRAMKNIRRGAPAIAL 182
             +  L  G+K LD+GSGSG L+A FA M G   KV  I+H+K L   ++ N+R+  P +  
Sbjct:    38 FDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLS 97

Query:   183 AENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTL 242
             +   + V  DGR GY + APYD I++  A   +P  ++DQLK GGR++   G       L
Sbjct:    98 SGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQML 157

Query:   243 ELLDKFVNGSVKTTVIHPHVYI 264
             E  DK  +GS+K   +   +Y+
Sbjct:   158 EQYDKLQDGSIKMKPLMGVIYV 179

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

ZFIN|ZDB-GENE-990415-134 pcmt "l-isoaspartyl protein carboxyl methyltransferase" [Danio rerio (taxid:7955)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 51/142 (35%), Positives = 81/142 (57%)

Query:   126 YGHLVYGSKVLDIGSGSGYLSALFAYM-G--AKVYAIEHVKNLCKRAMKNIRRGAPAIAL 182
             + HL  G+K LD+GSGSG LS  F+ M G   KV  I+H+K L + ++ N+++  P++  
Sbjct:   111 HDHLYEGAKALDVGSGSGILSVCFSRMVGPTGKVIGIDHIKELVEDSIANVKKDDPSLIT 170

Query:   183 AENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTL 242
             +   + +  DGR G+ + APYD I++  A   +P  ++DQLK GGR++   G       L
Sbjct:   171 SGRIKLIVGDGRMGFTEEAPYDAIHVGAAAPTVPQALLDQLKPGGRLILPVGPAGGNQML 230

Query:   243 ELLDKFVNGSVKTTVIHPHVYI 264
             E  DK  +GS K   +   +Y+
Sbjct:   231 EQYDKLEDGSTKMKPLMGVIYV 252

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691
4th Layer	2.1.1.77	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	299
pfam01135	210	pfam01135, PCMT, Protein-L-isoaspartate(D-aspartat	6e-30
COG2518	209	COG2518, Pcm, Protein-L-isoaspartate carboxylmethy	7e-30
PRK00312	212	PRK00312, pcm, protein-L-isoaspartate O-methyltran	1e-20
pfam01135	210	pfam01135, PCMT, Protein-L-isoaspartate(D-aspartat	4e-20
TIGR00080	215	TIGR00080, pimt, protein-L-isoaspartate(D-aspartat	3e-19
PRK13943	322	PRK13943, PRK13943, protein-L-isoaspartate O-methy	6e-18
PRK13942	212	PRK13942, PRK13942, protein-L-isoaspartate O-methy	8e-18
TIGR00080	215	TIGR00080, pimt, protein-L-isoaspartate(D-aspartat	3e-17
COG2518	209	COG2518, Pcm, Protein-L-isoaspartate carboxylmethy	2e-16
PRK00312	212	PRK00312, pcm, protein-L-isoaspartate O-methyltran	3e-16
PRK13942	212	PRK13942, PRK13942, protein-L-isoaspartate O-methy	1e-14
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	7e-13
PRK13944	205	PRK13944, PRK13944, protein-L-isoaspartate O-methy	8e-13
TIGR04364	394	TIGR04364, methyltran_FxLD, methyltransferase, FxL	1e-11
TIGR04188	363	TIGR04188, methyltr_grsp, methyltransferase, ATP-g	6e-11
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	4e-08
COG2519	256	COG2519, GCD14, tRNA(1-methyladenosine) methyltran	2e-07
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	3e-06
COG2242	187	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme	4e-06
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	4e-06
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	5e-06
PRK00377	198	PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr	6e-06
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	1e-05
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	2e-05
TIGR04188	363	TIGR04188, methyltr_grsp, methyltransferase, ATP-g	3e-05
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	7e-05
TIGR04364	394	TIGR04364, methyltran_FxLD, methyltransferase, FxL	1e-04
COG4122	219	COG4122, COG4122, Predicted O-methyltransferase [G	1e-04
PRK13943	322	PRK13943, PRK13943, protein-L-isoaspartate O-methy	2e-04
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	3e-04
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	3e-04
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	5e-04
TIGR03534	251	TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met	5e-04
COG2263	198	COG2263, COG2263, Predicted RNA methylase [Transla	6e-04
pfam01269	229	pfam01269, Fibrillarin, Fibrillarin	6e-04
TIGR02021	219	TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m	7e-04
PRK00377	198	PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr	8e-04
COG2890	280	COG2890, HemK, Methylase of polypeptide chain rele	8e-04
PRK11873	272	PRK11873, arsM, arsenite S-adenosylmethyltransfera	9e-04
TIGR02469	124	TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer	0.001
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	0.002
PRK14896	258	PRK14896, ksgA, 16S ribosomal RNA methyltransferas	0.002
PRK07580	230	PRK07580, PRK07580, Mg-protoporphyrin IX methyl tr	0.003
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	0.004
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	0.004
PLN02336	475	PLN02336, PLN02336, phosphoethanolamine N-methyltr	0.004
PRK00216	239	PRK00216, ubiE, ubiquinone/menaquinone biosynthesi	0.004
TIGR02072	240	TIGR02072, BioC, biotin biosynthesis protein BioC	0.004

>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)

 Score =  112 bits (281), Expect = 6e-30
 Identities = 54/139 (38%), Positives = 80/139 (57%), Gaps = 9/139 (6%)

Query: 129 LVYGSKVLDIGSGSGYLSALFAYM-GAK--VYAIEHVKNLCKRAMKNIRRGAPAIALAEN 185
           L  G +VL+IGSGSGYL+A FA M G    V +IEH+  L + A +N+ +        EN
Sbjct: 71  LKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNLEKLGL-----EN 125

Query: 186 FEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELL 245
              V  DGR+G+P+ APYD I++  A  +IP  ++DQLK GGR++   G   + + L+  
Sbjct: 126 VIVVVGDGRQGWPEFAPYDAIHVGAAAPEIPEALIDQLKEGGRLVIPVGPNGNQV-LQQF 184

Query: 246 DKFVNGSVKTTVIHPHVYI 264
           DK  +GSV    +    ++
Sbjct: 185 DKRNDGSVVIKDLEGVRFV 203

Length = 210

>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score =  111 bits (281), Expect = 7e-30
 Identities = 38/105 (36%), Positives = 63/105 (60%), Gaps = 5/105 (4%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
           G +VL+IG+GSGY +A+ A +  +V +IE ++ L ++A +N+          EN      
Sbjct: 73  GDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLET-----LGYENVTVRHG 127

Query: 192 DGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHE 236
           DG +G+P+ APYD I ++ A  ++P  ++DQLK GGR++   G  
Sbjct: 128 DGSKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVGSG 172

Length = 209

>gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase; Reviewed

 Score = 87.6 bits (218), Expect = 1e-20
 Identities = 36/111 (32%), Positives = 66/111 (59%), Gaps = 6/111 (5%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
           G +VL+IG+GSGY +A+ A++  +V+++E +K L   A + +++         N      
Sbjct: 79  GDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQ-----LGLHNVSVRHG 133

Query: 192 DGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLF-IKGHEDDIMT 241
           DG +G+P  AP+D I ++ A  +IP  +++QLK GG ++  + G E  ++T
Sbjct: 134 DGWKGWPAYAPFDRILVTAAAPEIPRALLEQLKEGGILVAPVGGEEQQLLT 184

Length = 212

>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)

 Score = 85.9 bits (213), Expect = 4e-20
 Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 2/78 (2%)

Query: 37  DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVY 96
           DIP +IG+   + +P  H ++LELL   LK G +VLEIG+GSGYLT  F  MVG  G V 
Sbjct: 45  DIPLSIGYGQTISAPHMHAMMLELLE--LKPGMRVLEIGSGSGYLTACFARMVGEVGLVV 102

Query: 97  TIEHIPELLEAARKRVKA 114
           +IEHIPEL+E AR+ ++ 
Sbjct: 103 SIEHIPELVEIARRNLEK 120

Length = 210

>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate) O-methyltransferase

 Score = 83.7 bits (207), Expect = 3e-19
 Identities = 39/108 (36%), Positives = 62/108 (57%), Gaps = 8/108 (7%)

Query: 126 YGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIAL 182
              L  G KVL+IG+GSGY +A+ A +      V +IE +  L ++A + +R+    + L
Sbjct: 72  LLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK----LGL 127

Query: 183 AENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRML 230
            +N   +  DG +G+   APYD IY++ A   IP  ++DQLK GG ++
Sbjct: 128 -DNVIVIVGDGTQGWEPLAPYDRIYVTAAGPKIPEALIDQLKEGGILV 174

This is an all-kingdom (but not all species) full-length ortholog enzyme for repairing aging proteins. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt [Protein fate, Protein modification and repair]. Length = 215

>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 82.2 bits (203), Expect = 6e-18
 Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 8/106 (7%)

Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGAK---VYAIEHVKNLCKRAMKNIRRGAPAIALAE 184
            L  G +VL+IG G+GY +A+ + +  +   V ++E+ + +C+ A +N+RR        E
Sbjct: 77  GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG-----IE 131

Query: 185 NFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRML 230
           N  FVC DG  G P+ APYDVI+++  + ++P     QLK GGR++
Sbjct: 132 NVIFVCGDGYYGVPEFAPYDVIFVTVGVDEVPETWFTQLKEGGRVI 177

Length = 322

>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 79.7 bits (197), Expect = 8e-18
 Identities = 41/102 (40%), Positives = 61/102 (59%), Gaps = 8/102 (7%)

Query: 132 GSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
           G KVL+IG+GSGY +A+ A +     KV  IE +  L ++A K +++        +N E 
Sbjct: 77  GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKK-----LGYDNVEV 131

Query: 189 VCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRML 230
           +  DG  GY + APYD IY++ A  DIP  +++QLK GG M+
Sbjct: 132 IVGDGTLGYEENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMV 173

Length = 212

>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate) O-methyltransferase

 Score = 78.3 bits (193), Expect = 3e-17
 Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 37  DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVY 96
           D P  IG+   + +P    ++ ELL   LK G KVLEIGTGSGY   +   +VG  G V 
Sbjct: 49  DTPLEIGYGQTISAPHMVAMMTELL--ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVV 106

Query: 97  TIEHIPELLEAARKRVK 113
           +IE IPEL E A +R++
Sbjct: 107 SIERIPELAEKAERRLR 123

This is an all-kingdom (but not all species) full-length ortholog enzyme for repairing aging proteins. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt [Protein fate, Protein modification and repair]. Length = 215

>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 76.1 bits (188), Expect = 2e-16
 Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 5/77 (6%)

Query: 37  DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVY 96
           D    IG    + +P     +L+LL   LK GD+VLEIGTGSGY   +   +V   G+V 
Sbjct: 44  DRALPIGCGQTISAPHMVARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLV---GRVV 98

Query: 97  TIEHIPELLEAARKRVK 113
           +IE I EL E AR+ ++
Sbjct: 99  SIERIEELAEQARRNLE 115

Length = 209

>gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase; Reviewed

 Score = 75.2 bits (186), Expect = 3e-16
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 5/78 (6%)

Query: 37  DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVY 96
           +    IG    +  P     + ELL   LK GD+VLEIGTGSGY   +   +  +  +V+
Sbjct: 50  NRALPIGCGQTISQPYMVARMTELLE--LKPGDRVLEIGTGSGYQAAV---LAHLVRRVF 104

Query: 97  TIEHIPELLEAARKRVKA 114
           ++E I  L   A++R+K 
Sbjct: 105 SVERIKTLQWEAKRRLKQ 122

Length = 212

>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 71.2 bits (175), Expect = 1e-14
 Identities = 38/78 (48%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 37  DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVY 96
           D P  IG+   + +     ++ ELL   LK G KVLEIGTGSGY   +   +VG SGKV 
Sbjct: 48  DTPLEIGYGQTISAIHMVAIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVV 105

Query: 97  TIEHIPELLEAARKRVKA 114
           TIE IPEL E A+K +K 
Sbjct: 106 TIERIPELAEKAKKTLKK 123

Length = 212

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 63.5 bits (155), Expect = 7e-13
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 10/105 (9%)

Query: 132 GSKVLDIGSGSGYLSALFA--YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
           G++VLDIG G+G L+   A  + GA+V  ++    + + A +N +       L     FV
Sbjct: 2   GARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLA-----LGPRITFV 56

Query: 190 CADGRRGYPDAAPYDVIYISQAIRDIPWH---IVDQLKLGGRMLF 231
             D          +D ++I     D+      +   LK GGR++ 
Sbjct: 57  QGDAPDALDLLEGFDAVFIGGGGGDLLELLDALASLLKPGGRLVL 101

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 65.6 bits (160), Expect = 8e-13
 Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 7/102 (6%)

Query: 132 GSKVLDIGSGSGYLSALFAY---MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
           G K+L++G+GSGY +A+ A       KVY +E VK L   A +NI R      + E +  
Sbjct: 73  GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIER-LGYWGVVEVYH- 130

Query: 189 VCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRML 230
              DG+RG    AP+D I ++ A   IP  +V QLK GG ++
Sbjct: 131 --GDGKRGLEKHAPFDAIIVTAAASTIPSALVRQLKDGGVLV 170

Length = 205

>gnl|CDD|234563 TIGR04364, methyltran_FxLD, methyltransferase, FxLD system

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 9/102 (8%)

Query: 132 GSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
           G +VL+IGSG GY +AL A +     +V  ++  +++  RA     R   A A       
Sbjct: 83  GMRVLEIGSG-GYNAALLAELVGPSGEVTTVDIDEDVTDRA-----RACLAAAGYPQVTV 136

Query: 189 VCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRML 230
           V AD   G P+ APYD I ++    DIP   +DQL  GGR++
Sbjct: 137 VLADAEAGVPELAPYDRIIVTVGAWDIPPAWLDQLAPGGRLV 178

Members of this family resemble occur regularly in the vicinity of lantibiotic biosynthesis enzymes and their probable target, the FxLD family of putative ribosomal natural product precursor (TIGR04363). Members resemble protein-L-isoaspartate O-methyltransferase (TIGR00080) and a predicted methyltranserase, TIGR04188, of another putative peptide modification system. Length = 394

>gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide maturase system

 Score = 62.0 bits (151), Expect = 6e-11
 Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 14/104 (13%)

Query: 132 GSKVLDIGSGSGYLSALFA-YMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAE---NF 186
           G +VL+IG+G+GY +AL    +G   V ++E    L  RA         A ALA      
Sbjct: 108 GHRVLEIGTGTGYSAALLCHRLGDDNVTSVEVDPGLAARA---------ASALAAAGYAP 158

Query: 187 EFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRML 230
             V  DG  G+P  APYD I  + A+R +P   + Q + GG +L
Sbjct: 159 TVVTGDGLLGHPPRAPYDRIIATCAVRRVPPAWLRQTRPGGVIL 202

Members of this protein family are predicted SAM-dependent methyltransferases that regularly occur in the context of a putative peptide modification ATP-grasp enzyme (TIGR04187, related to enzymes of microviridin maturation) and a putative ribosomal peptide modification target (TIGR04186). Length = 363

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 50.1 bits (120), Expect = 4e-08
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 14/108 (12%)

Query: 134 KVLDIGSGSGYLSALFA-YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCAD 192
           +VLD+G G+G L+   A   GA+V  ++      + A K          LA+N E +  D
Sbjct: 1   RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-----LADNVEVLKGD 55

Query: 193 GRRGYPDA-APYDVIYIS---QAIRDIPWHIVDQ----LKLGGRMLFI 232
                P+A   +DVI        + +     +++    LK GG ++  
Sbjct: 56  AEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 14/120 (11%)

Query: 50  SPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAAR 109
            P D   ++  L   +  G +VLE GTGSG LT      VG  G V T E   +  + AR
Sbjct: 79  YPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTAR 136

Query: 110 KRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLS--ALFAYMGAKVYAIEHVKNLCK 167
           + +         R+          K+ D+  G       A+F  +      +EHV +  K
Sbjct: 137 ENLSEFG--LGDRVTL--------KLGDVREGIDEEDVDAVFLDLPDPWNVLEHVSDALK 186

Length = 256

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 29/119 (24%), Positives = 42/119 (35%), Gaps = 23/119 (19%)

Query: 132 GSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
           G +VLD G+GSG      A  G  A+V  +E        A    RR      LA     V
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALA----RRRLALAGLAPRVRVV 56

Query: 190 CADGRRGYPDAAP--YDVIYI----------SQAIRDIPWHIVDQ----LKLGGRMLFI 232
             D R    +     +D++             +  RD+    +      LK GG ++ I
Sbjct: 57  VGDARE-LLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVVI 114

This family contains methyltransferase domains. Length = 117

>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism]

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 9/103 (8%)

Query: 132 GSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
           G ++ DIG+G+G ++  +A  G   +V AIE  ++  + A++ I R A    + +N E V
Sbjct: 35  GDRLWDIGAGTGSITIEWALAGPSGRVIAIE--RD--EEALELIERNAARFGV-DNLEVV 89

Query: 190 CADGRRGYPDAAPYDVIYI--SQAIRDIPWHIVDQLKLGGRML 230
             D     PD    D I+I     I +I     ++LK GGR++
Sbjct: 90  EGDAPEALPDLPSPDAIFIGGGGNIEEILEAAWERLKPGGRLV 132

Length = 187

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 22/157 (14%)

Query: 132 GSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
           G KVLD+G G+GYL+ + A     GA+V  I+  +   ++A +N ++        EN EF
Sbjct: 4   GIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKK-----LGYENVEF 58

Query: 189 VCAD----GRRGYPDAAPYDVIYISQAIRDIPWH------IVDQLKLGGRMLFIKGHEDD 238
           +  D     +    D   +DV+  ++ +  +P        I+  LK GG ++        
Sbjct: 59  IQGDIEELPQLQLED-NSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDPVLLS 117

Query: 239 IMTLELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKR 275
            +   L D      +   V+   +   +L ++  +  
Sbjct: 118 ELPALLED---LERLYAGVLEGAIGKKKLLTILREAG 151

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 43.8 bits (104), Expect = 5e-06
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 28/108 (25%)

Query: 136 LDIGSGSGYLSALFA-YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGR 194
           LD+G G+G L+   A   GA+V  ++    +   A K               +FV  D  
Sbjct: 1   LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKR-----------APRKFVVGDAE 49

Query: 195 R-GYPDAAPYDVIYISQAIRDIPWHIVDQ----------LKLGGRMLF 231
              +PD + +DV+  S  +     H+ D           LK GG+++ 
Sbjct: 50  DLPFPDES-FDVVVSSLVL----HHLPDPERALREIARVLKPGGKLVI 92

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

 Score = 45.9 bits (109), Expect = 6e-06
 Identities = 18/56 (32%), Positives = 30/56 (53%)

Query: 57  VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV 112
            L L    L+ GD +L+IG G+G +T     +VG +GKVY ++   + +   R+  
Sbjct: 30  ALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNA 85

Length = 198

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 65  LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRIN 124
           LK G KVL++G G+GYLT +    +G   +V  I+   E +E A++  K       + + 
Sbjct: 1   LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKL---GYENVE 57

Query: 125 FY 126
           F 
Sbjct: 58  FI 59

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
           G +VL++G+GSG ++ + A  G KV  ++      + A  N +            E + +
Sbjct: 24  GDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIR---NNGVEVIRS 80

Query: 192 DGRRGYPDAAPYDVI 206
           D    +     +DVI
Sbjct: 81  DLFEPF-RGDKFDVI 94

Length = 188

>gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide maturase system

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 57  VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114
            L++  GH     +VLEIGTG+GY   L    +G    V ++E  P L   A   + A
Sbjct: 102 ALDVEDGH-----RVLEIGTGTGYSAALLCHRLG-DDNVTSVEVDPGLAARAASALAA 153

Members of this protein family are predicted SAM-dependent methyltransferases that regularly occur in the context of a putative peptide modification ATP-grasp enzyme (TIGR04187, related to enzymes of microviridin maturation) and a putative ribosomal peptide modification target (TIGR04186). Length = 363

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 57  VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114
             ELL   ++ GD+VL++G G G         VG  G+V  I+    +L  A++R   
Sbjct: 11  TFELL--AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG 66

Length = 241

>gnl|CDD|234563 TIGR04364, methyltran_FxLD, methyltransferase, FxLD system

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 68  GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114
           G +VLEIG+G GY   L   +VG SG+V T++   ++ + AR  + A
Sbjct: 83  GMRVLEIGSG-GYNAALLAELVGPSGEVTTVDIDEDVTDRARACLAA 128

Members of this family resemble occur regularly in the vicinity of lantibiotic biosynthesis enzymes and their probable target, the FxLD family of putative ribosomal natural product precursor (TIGR04363). Members resemble protein-L-isoaspartate O-methyltransferase (TIGR00080) and a predicted methyltranserase, TIGR04188, of another putative peptide modification system. Length = 394

>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 35/151 (23%), Positives = 55/151 (36%), Gaps = 16/151 (10%)

Query: 70  KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHL 129
           ++LEIGT  GY        +   G++ TIE   E  E AR+ +  +A     RI     L
Sbjct: 62  RILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLA-EAG-VDDRI----EL 115

Query: 130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
           + G   LD+ S     S    ++ A            +RA+  +R G   + +A+N  F 
Sbjct: 116 LLGGDALDVLSRLLDGSFDLVFIDA---DKADYPEYLERALPLLRPG--GLIVADNVLF- 169

Query: 190 CADGRRGYPDAAPYDVIY--ISQAIRDIPWH 218
              GR   P           +      +   
Sbjct: 170 --GGRVADPSIRDARTQVRGVRDFNDYLLED 198

Length = 219

>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 64  HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113
            L  G +VLEIG G+GY   +   +VG  G V ++E+  ++ E A++ V+
Sbjct: 77  GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVR 126

Length = 322

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 68  GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIK 121
           G +VL+IG G+G L     A +    +V  ++  PE+LE AR+  K      I 
Sbjct: 2   GARVLDIGCGTGSLAIEL-ARLFPGARVTGVDLSPEMLELARENAKLALGPRIT 54

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 65  LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRI 123
           +K GDKVL++  G+G +  L    VG +G+V  ++    +LE AR+++K K    ++ +
Sbjct: 49  IKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFV 106

Length = 238

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 135 VLDIGSGSGYLSALFAYMG-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADG 193
           +LD+G G+G +    A  G + V  ++  K   + A + +R   P +       FV AD 
Sbjct: 1   ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKV------RFVVADA 54

Query: 194 RRGYPDAAPYDVIYIS 209
           R    +   +D++  +
Sbjct: 55  RDLPFEEGSFDLVICA 70

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific

 Score = 40.5 bits (96), Expect = 5e-04
 Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 34/123 (27%)

Query: 101 IP-----ELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLS-ALFAYM-G 153
           IP     EL+EAA +R+K                    +VLD+G+GSG ++ AL      
Sbjct: 68  IPRPETEELVEAALERLKKGPL----------------RVLDLGTGSGAIALALAKERPD 111

Query: 154 AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI-----YI 208
           A+V A++        A KN  R        +N EF+ +D     P    +D+I     YI
Sbjct: 112 ARVTAVDISPEALAVARKNAAR-----LGLDNVEFLQSDWFEPLPG-GKFDLIVSNPPYI 165

Query: 209 SQA 211
            +A
Sbjct: 166 PEA 168

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251

>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 7/65 (10%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVC 190
           G  VLD+G+G+G L+   A +GA  V A++    +   A++  R  A    L  + EFV 
Sbjct: 46  GKTVLDLGAGTGILAIGAALLGASRVLAVD----IDPEALEIARANAE--ELLGDVEFVV 99

Query: 191 ADGRR 195
           AD   
Sbjct: 100 ADVSD 104

Length = 198

>gnl|CDD|201699 pfam01269, Fibrillarin, Fibrillarin

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 64  HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP----ELLEAARKR 111
            +K G KVL +G  SG   +    +VG  G VY +E  P    EL+  A+KR
Sbjct: 70  PIKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINMAKKR 121

Length = 229

>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase

 Score = 39.8 bits (93), Expect = 7e-04
 Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 16/138 (11%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
           G +VLD G G+G LS   A  GA V A++  + + + A    R  A    +A N EF   
Sbjct: 56  GKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMA----RNRAQGRDVAGNVEFEVN 111

Query: 192 D-----GRRGYPDAAPYDVIYISQAIRDIPWHIVDQL--KLGGRMLFIKGHEDDI-MTLE 243
           D     G   +      DV+ I     D+    +  L      R++F    +      L+
Sbjct: 112 DLLSLCGE--FDIVVCMDVL-IHYPASDMA-KALGHLASLTKERVIFTFAPKTAWLAFLK 167

Query: 244 LLDKFVNGSVKTTVIHPH 261
           ++ +   GS + T  + H
Sbjct: 168 MIGELFPGSSRATSAYLH 185

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219

>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 19/160 (11%)

Query: 96  YTIEHIP-ELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLS---ALFAY 151
           Y I  IP E  E   +    K E     ++    L  G  +LDIG G+G ++   +L   
Sbjct: 5   YVIPGIPDEEFERDEEIPMTKEEIRALALS-KLRLRKGDMILDIGCGTGSVTVEASLLVG 63

Query: 152 MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAP-YDVIYISQ 210
              KVYA++      ++A+   RR A    +  N   +  +           +D I+I  
Sbjct: 64  ETGKVYAVDKD----EKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119

Query: 211 AIRDIPWHI---VDQLKLGGRMLFIKGHEDDIMTLELLDK 247
               +   I    + +K GGR++       D + LE ++ 
Sbjct: 120 GSEKLKEIISASWEIIKKGGRIVI------DAILLETVNN 153

Length = 198

>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 30/119 (25%)

Query: 103 ELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMG--AKVYAIE 160
            L+EAA   +    +                ++LD+G+GSG ++   A  G  A+V A++
Sbjct: 98  LLVEAALALLLQLDK----------------RILDLGTGSGAIAIALAKEGPDAEVIAVD 141

Query: 161 HVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI-----YISQAIRD 214
               +   A+   R  A           V +D          +D+I     YI     +
Sbjct: 142 ----ISPDALALARENA-ERNGLVRVLVVQSDLFEPLRG--KFDLIVSNPPYIPAEDPE 193

Length = 280

>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed

 Score = 39.9 bits (94), Expect = 9e-04
 Identities = 19/46 (41%), Positives = 28/46 (60%)

Query: 65  LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 110
           LK G+ VL++G+G G+   L    VG +GKV  ++  PE+L  AR 
Sbjct: 75  LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARA 120

Length = 272

>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 17/108 (15%)

Query: 132 GSKVLDIGSGSGYLS--ALFAYMGAKVYAIEHVKNLCKRAMKNIRR-GAPAIALAENFEF 188
           G  + DIG+G+G ++  A       +VYAIE          +N+RR G   I + E    
Sbjct: 20  GDVLWDIGAGTGSVTIEAARLVPNGRVYAIERNPEALDLIERNLRRFGVSNIVIVEGDAP 79

Query: 189 VCADGRRGYPDAAPYDVIYIS------QAIRDIPWHIVDQLKLGGRML 230
              +     PDA     +++       Q I +       +L+ GGR++
Sbjct: 80  EAPEDLLPDPDA-----VFVGGSGGLLQEILEAVE---RRLRPGGRIV 119

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 17/107 (15%)

Query: 132 GSKVLDIGSGSGYLSALFA-YMGA--KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
           G +VLD+G G G  +   A  +G   +V  I+  + +   A     R A    L  N EF
Sbjct: 20  GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALA---KERAA---GLGPNVEF 73

Query: 189 VCADGRR-GYPDAAPYDVIYISQA---IRDIP---WHIVDQLKLGGR 228
           V  D     +PD + +D +   +    + D       I   L+ GGR
Sbjct: 74  VRGDADGLPFPDGS-FDAVRSDRVLQHLEDPARALAEIARVLRPGGR 119

Length = 241

>gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 7/77 (9%)

Query: 119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAP 178
            + RI  Y     G  VL+IG G G L+   A    KVYAIE    L +           
Sbjct: 17  VVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRD------- 69

Query: 179 AIALAENFEFVCADGRR 195
               A N E +  D  +
Sbjct: 70  DEIAAGNVEIIEGDALK 86

Length = 258

>gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase; Validated

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 107 AARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLC 166
           A  +R++    +++         + G ++LD G G G LS   A  GAKV A +    + 
Sbjct: 43  AGHQRMRDTVLSWLPADG----DLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMV 98

Query: 167 KRAMKNIRRGAPAIALAENFEFVCAD 192
           + A    R  AP   LA N  F   D
Sbjct: 99  EEA----RERAPEAGLAGNITFEVGD 120

Length = 230

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 36.3 bits (84), Expect = 0.004
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 68  GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 116
           GD+VL+ G GSG       A  G   +V  +E  PE    AR+R+    
Sbjct: 1   GDRVLDPGAGSGAFLLAA-ARAGPDARVVGVELDPEAAALARRRLALAG 48

This family contains methyltransferase domains. Length = 117

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 9/88 (10%)

Query: 132 GSKVLDIGSGSGYLSALFA--YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
           G KVLD+  G+G ++ L A      +V  ++  +++ + A + +++        +N EFV
Sbjct: 52  GDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV-----QNVEFV 106

Query: 190 CADGRR-GYPDAAPYDVIYISQAIRDIP 216
             D     +PD + +D + IS  +R++ 
Sbjct: 107 VGDAENLPFPDNS-FDAVTISFGLRNVT 133

Length = 238

>gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 29/114 (25%)

Query: 132 GSKVLDIGSGSG----YLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFE 187
           G KVLD+G G G    Y++  F      V  I+   N+   A++       AI    + E
Sbjct: 267 GQKVLDVGCGIGGGDFYMAENF---DVHVVGIDLSVNMISFALER------AIGRKCSVE 317

Query: 188 FVCAD-GRRGYPDAAPYDVIYISQAIRDIPWHIVDQ----------LKLGGRML 230
           F  AD  ++ YPD + +DVIY     RD   HI D+          LK GG++L
Sbjct: 318 FEVADCTKKTYPDNS-FDVIY----SRDTILHIQDKPALFRSFFKWLKPGGKVL 366

Length = 475

>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

 Score = 37.8 bits (89), Expect = 0.004
 Identities = 14/51 (27%), Positives = 28/51 (54%)

Query: 65  LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 115
           ++ GDKVL++  G+G L       VG +G+V  ++    +L   R++++  
Sbjct: 49  VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL 99

Length = 239

>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 23/110 (20%)

Query: 133 SKVLDIGSGSGYLSALFA--YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVC 190
           + VLDIG G+GYL+      +  A+  A +    +  +A   +          EN +F+C
Sbjct: 36  ASVLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQAKTKLS---------ENVQFIC 86

Query: 191 ADGRRGYPDAAPYDVIYISQAIRDIPW---------HIVDQLKLGGRMLF 231
            D  +   + + +D+I  + A++   W          +   LK GG + F
Sbjct: 87  GDAEKLPLEDSSFDLIVSNLALQ---WCDDLSQALSELARVLKPGGLLAF 133

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	299
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	100.0
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.97
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.95
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.94
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.93
KOG1661|consensus	237		99.91
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.9
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.85
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.71
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.69
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.67
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.67
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.67
PLN02336	475	phosphoethanolamine N-methyltransferase	99.65
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.62
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.6
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.59
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.58
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.57
PLN02244	340	tocopherol O-methyltransferase	99.56
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.56
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.55
PRK11207	197	tellurite resistance protein TehB; Provisional	99.54
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.53
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.52
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.51
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.51
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.51
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.51
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.5
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.49
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.49
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.49
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.49
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.48
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.47
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.47
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.47
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.46
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.46
KOG1270|consensus	282		99.45
PRK04266	226	fibrillarin; Provisional	99.44
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.44
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.43
PRK12335	287	tellurite resistance protein TehB; Provisional	99.43
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.43
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.43
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.42
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.41
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.41
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.41
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.41
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.4
COG4123	248	Predicted O-methyltransferase [General function pr	99.4
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.4
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.4
PRK14967	223	putative methyltransferase; Provisional	99.39
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.38
KOG2915|consensus	314		99.38
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.36
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.36
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.36
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.36
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.36
PTZ00146	293	fibrillarin; Provisional	99.36
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.36
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.36
PRK08317	241	hypothetical protein; Provisional	99.36
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.35
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.35
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.35
PRK14968	188	putative methyltransferase; Provisional	99.34
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.34
PLN02476	278	O-methyltransferase	99.34
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.34
PRK07402	196	precorrin-6B methylase; Provisional	99.33
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.33
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.32
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.32
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.32
PLN02490	340	MPBQ/MSBQ methyltransferase	99.32
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.32
PRK06922	677	hypothetical protein; Provisional	99.31
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.31
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.31
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.31
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.31
COG4122	219	Predicted O-methyltransferase [General function pr	99.3
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.3
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.29
KOG4300|consensus	252		99.29
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.28
PLN03075	296	nicotianamine synthase; Provisional	99.28
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.27
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.27
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.26
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.26
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.26
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.26
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.25
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.25
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.25
KOG1540|consensus	296		99.25
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.24
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.24
PRK05785	226	hypothetical protein; Provisional	99.24
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.24
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.23
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.23
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.22
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.22
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.21
PLN02336	475	phosphoethanolamine N-methyltransferase	99.21
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.21
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.21
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.21
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.21
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.2
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.2
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.2
COG2890	280	HemK Methylase of polypeptide chain release factor	99.2
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.2
KOG1271|consensus	227		99.18
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.17
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.16
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.16
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.16
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.16
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.15
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.14
PRK04457	262	spermidine synthase; Provisional	99.14
KOG1541|consensus	270		99.13
KOG2899|consensus	288		99.12
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.11
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.11
PRK00811	283	spermidine synthase; Provisional	99.11
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.1
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.1
PRK06202	232	hypothetical protein; Provisional	99.1
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.08
TIGR00438	188	rrmJ cell division protein FtsJ.	99.07
TIGR03438	301	probable methyltransferase. This model represents	99.05
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.04
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.02
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.0
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.0
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.99
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.97
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.96
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.95
PRK01581	374	speE spermidine synthase; Validated	98.94
PLN02366	308	spermidine synthase	98.93
KOG1499|consensus	346		98.93
PHA03411	279	putative methyltransferase; Provisional	98.92
KOG3010|consensus	261		98.92
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.92
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.92
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.91
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.91
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.9
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.9
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.89
KOG2904|consensus	328		98.89
PHA03412	241	putative methyltransferase; Provisional	98.89
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.88
PRK03612	521	spermidine synthase; Provisional	98.88
PLN02672	1082	methionine S-methyltransferase	98.87
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.87
COG2521	287	Predicted archaeal methyltransferase [General func	98.86
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.86
KOG1663|consensus	237		98.86
KOG2361|consensus	264		98.84
COG2520	341	Predicted methyltransferase [General function pred	98.84
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.8
PRK04148	134	hypothetical protein; Provisional	98.79
KOG3191|consensus	209		98.79
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.75
KOG3420|consensus	185		98.75
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.74
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.72
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.72
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.69
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.68
KOG1500|consensus	517		98.67
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.67
KOG0820|consensus	315		98.66
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.64
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.62
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.61
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.61
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.6
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.59
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.59
PLN02823	336	spermine synthase	98.57
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.57
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.55
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.54
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.54
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.53
PRK00536	262	speE spermidine synthase; Provisional	98.53
KOG2187|consensus	534		98.5
KOG1975|consensus	389		98.5
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.49
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.47
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.45
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.44
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.44
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.43
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.43
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.41
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.41
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.41
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.4
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.4
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.4
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.39
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.38
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.37
COG3897	218	Predicted methyltransferase [General function pred	98.36
PRK07402	196	precorrin-6B methylase; Provisional	98.35
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	98.34
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.33
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.3
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	98.28
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.26
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.25
KOG1122|consensus	460		98.23
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.23
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.23
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.22
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.2
PRK10742	250	putative methyltransferase; Provisional	98.2
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.2
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	98.19
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.19
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	98.18
COG4798	238	Predicted methyltransferase [General function pred	98.16
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.16
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.15
COG4076	252	Predicted RNA methylase [General function predicti	98.15
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.14
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.13
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	98.11
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.11
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	98.1
KOG3045|consensus	325		98.09
PRK05785	226	hypothetical protein; Provisional	98.08
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.07
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.07
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.07
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	98.07
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.06
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.06
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.05
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.05
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.04
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.04
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.04
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.04
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.03
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.02
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.02
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.01
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.01
KOG2940|consensus	325		98.0
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.0
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.0
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.0
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	97.99
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.99
PRK11207	197	tellurite resistance protein TehB; Provisional	97.98
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	97.95
KOG4589|consensus	232		97.95
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.94
PLN02244	340	tocopherol O-methyltransferase	97.94
PRK08317	241	hypothetical protein; Provisional	97.93
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.92
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.91
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.9
KOG2730|consensus	263		97.9
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	97.89
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	97.88
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	97.88
KOG1541|consensus	270		97.87
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.86
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	97.86
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	97.85
PRK04266	226	fibrillarin; Provisional	97.85
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.85
PRK14967	223	putative methyltransferase; Provisional	97.84
PRK06202	232	hypothetical protein; Provisional	97.84
TIGR03438	301	probable methyltransferase. This model represents	97.83
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.82
KOG1596|consensus	317		97.82
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	97.82
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	97.82
PF13679	141	Methyltransf_32: Methyltransferase domain	97.81
COG2890	280	HemK Methylase of polypeptide chain release factor	97.79
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	97.78
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.78
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.76
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	97.75
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	97.74
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	97.74
PLN02585	315	magnesium protoporphyrin IX methyltransferase	97.73
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.71
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	97.71
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	97.71
PRK10258	251	biotin biosynthesis protein BioC; Provisional	97.71
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	97.7
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	97.7
KOG0820|consensus	315		97.7
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	97.7
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	97.7
PRK14968	188	putative methyltransferase; Provisional	97.69
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	97.68
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.67
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	97.67
KOG2198|consensus	375		97.67
PHA03412	241	putative methyltransferase; Provisional	97.67
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.66
PRK12335	287	tellurite resistance protein TehB; Provisional	97.65
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	97.64
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	97.63
COG4123	248	Predicted O-methyltransferase [General function pr	97.62
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.62
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.62
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	97.61
KOG2904|consensus	328		97.61
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	97.61
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	97.61
TIGR00452	314	methyltransferase, putative. Known examples to dat	97.59
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.59
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	97.58
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	97.58
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.57
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	97.57
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.56
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	97.55
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	97.55
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	97.55
KOG2899|consensus	288		97.54
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	97.53
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	97.53
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	97.53
PLN02490	340	MPBQ/MSBQ methyltransferase	97.53
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	97.51
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	97.51
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	97.51
PRK04457	262	spermidine synthase; Provisional	97.5
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.49
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.49
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	97.48
KOG2671|consensus	421		97.47
KOG1270|consensus	282		97.46
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	97.46
PRK06922	677	hypothetical protein; Provisional	97.46
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.43
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	97.43
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	97.42
KOG1331|consensus	293		97.41
PF13679	141	Methyltransf_32: Methyltransferase domain	97.41
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	97.4
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	97.39
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	97.37
KOG3420|consensus	185		97.36
KOG1269|consensus	364		97.36
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	97.36
TIGR00438	188	rrmJ cell division protein FtsJ.	97.34
PLN02672	1082	methionine S-methyltransferase	97.34
KOG3191|consensus	209		97.33
KOG3201|consensus	201		97.3
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	97.3
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	97.29
KOG3178|consensus	342		97.28
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	97.24
PRK10901	427	16S rRNA methyltransferase B; Provisional	97.24
KOG2352|consensus	482		97.22
PRK04148	134	hypothetical protein; Provisional	97.22
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	97.22
PHA03411	279	putative methyltransferase; Provisional	97.22
PTZ00146	293	fibrillarin; Provisional	97.22
PLN02476	278	O-methyltransferase	97.2
COG4122	219	Predicted O-methyltransferase [General function pr	97.2
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	97.19
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	97.18
PRK13255	218	thiopurine S-methyltransferase; Reviewed	97.18
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	97.18
KOG1709|consensus	271		97.17
KOG1661|consensus	237		97.15
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	97.14
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.13
PRK14904	445	16S rRNA methyltransferase B; Provisional	97.11
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	97.11
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	97.11
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.1
PRK14903	431	16S rRNA methyltransferase B; Provisional	97.09
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	97.08
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	97.08
PRK14902	444	16S rRNA methyltransferase B; Provisional	97.06
PLN03075	296	nicotianamine synthase; Provisional	96.99
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	96.98
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	96.95
KOG1227|consensus	351		96.94
PRK14901	434	16S rRNA methyltransferase B; Provisional	96.93
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	96.92
PHA01634	156	hypothetical protein	96.9
KOG1501|consensus	636		96.87
KOG1499|consensus	346		96.85
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	96.83
KOG3987|consensus	288		96.8
PLN02366	308	spermidine synthase	96.79
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	96.77
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	96.77
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.77
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	96.77
KOG1540|consensus	296		96.75
PRK00811	283	spermidine synthase; Provisional	96.73
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	96.73
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.72
KOG0024|consensus	354		96.72
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	96.69
PRK11524	284	putative methyltransferase; Provisional	96.68
KOG4058|consensus	199		96.67
COG2265	432	TrmA SAM-dependent methyltransferases related to t	96.64
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.61
COG0286	489	HsdM Type I restriction-modification system methyl	96.56
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	96.55
PLN02589	247	caffeoyl-CoA O-methyltransferase	96.54
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	96.51
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	96.5
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	96.49
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.49
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	96.43
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.4
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	96.34
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	96.31
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	96.3
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	96.27
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	96.23
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	96.22
KOG3010|consensus	261		96.18
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.18
KOG1271|consensus	227		96.15
KOG3115|consensus	249		96.13
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.1
COG3129	292	Predicted SAM-dependent methyltransferase [General	96.1
COG1041	347	Predicted DNA modification methylase [DNA replicat	96.09
PRK03612	521	spermidine synthase; Provisional	96.07
PRK13699	227	putative methylase; Provisional	96.06
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.03
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	96.0
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	95.98
PRK01581	374	speE spermidine synthase; Validated	95.93
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	95.89
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	95.81
COG1565	370	Uncharacterized conserved protein [Function unknow	95.78
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	95.76
KOG2793|consensus	248		95.75
KOG4589|consensus	232		95.73
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	95.68
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	95.68
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	95.65
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	95.64
KOG2187|consensus	534		95.62
KOG1500|consensus	517		95.62
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	95.54
PRK13256	226	thiopurine S-methyltransferase; Reviewed	95.41
KOG1562|consensus	337		95.41
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	95.22
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	95.11
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	94.98
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	94.83
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	94.82
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	94.81
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	94.81
KOG2798|consensus	369		94.8
PRK10742	250	putative methyltransferase; Provisional	94.68
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	94.65
KOG2915|consensus	314		94.64
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	94.58
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	94.57
PHA01634	156	hypothetical protein	94.56
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	94.54
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	94.53
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	94.51
COG2520	341	Predicted methyltransferase [General function pred	94.5
KOG0822|consensus	649		94.46
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	94.41
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	94.34
KOG1253|consensus	525		94.21
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	94.11
PLN02823	336	spermine synthase	94.1
KOG1099|consensus	294		93.99
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	93.8
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	93.75
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	93.72
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	93.69
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	93.67
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	93.64

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.1e-32  Score=220.32  Aligned_cols=186  Identities=33%  Similarity=0.529  Sum_probs=173.6

Q ss_pred             eeeeccCCCcCcCccccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHH
Q psy7837           9 LTLLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAM   88 (299)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~   88 (299)
                      ...+++...++|+.|+  |+.+...+|.|.++++++|++++.|+++++|++.|.  +++|++||||||||||.++.+++.
T Consensus        18 ~~v~~A~~~vPRe~FV--p~~~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l   93 (209)
T COG2518          18 ERVLKAFLAVPRELFV--PAAYKHLAYEDRALPIGCGQTISAPHMVARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARL   93 (209)
T ss_pred             HHHHHHHHhCCHHhcc--CchhhcccccCCcccCCCCceecCcHHHHHHHHHhC--CCCCCeEEEECCCchHHHHHHHHH
Confidence            3456788999999999  777999999999999999999999999999999999  999999999999999999999999


Q ss_pred             hCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHH
Q psy7837          89 VGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKR  168 (299)
Q Consensus        89 ~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~  168 (299)
                      ++   +|+++|+.+.+.+.|++++..                                                      
T Consensus        94 ~~---~V~siEr~~~L~~~A~~~L~~------------------------------------------------------  116 (209)
T COG2518          94 VG---RVVSIERIEELAEQARRNLET------------------------------------------------------  116 (209)
T ss_pred             hC---eEEEEEEcHHHHHHHHHHHHH------------------------------------------------------
Confidence            87   699999999999999999988                                                      


Q ss_pred             HHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCCCcceeeeEEee
Q psy7837         169 AMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKF  248 (299)
Q Consensus       169 a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~  248 (299)
                                  .+..|+.++++|....+++.++||.|++.+....+|+.+.++|++||+|+++++ ....+.+..+.+.
T Consensus       117 ------------lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG-~~~~q~l~~~~k~  183 (209)
T COG2518         117 ------------LGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVG-SGPAQRLLRITKD  183 (209)
T ss_pred             ------------cCCCceEEEECCcccCCCCCCCcCEEEEeeccCCCCHHHHHhcccCCEEEEEEc-cCCcEEEEEEEEc
Confidence                        466789999999999999989999999999999999999999999999999999 4445889999999


Q ss_pred             cCCceEEEEecceeccccccc
Q psy7837         249 VNGSVKTTVIHPHVYIHELKS  269 (299)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~  269 (299)
                      .++.|..+.++++.|+ |+.+
T Consensus       184 ~~~~~~~~~l~~v~~v-Pl~~  203 (209)
T COG2518         184 GDGNFERRDLFNVRFV-PLVG  203 (209)
T ss_pred             CCCcEEEeeeccceee-ecCC
Confidence            8889999999999999 9987

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.97  E-value=1.8e-31  Score=221.70  Aligned_cols=194  Identities=35%  Similarity=0.546  Sum_probs=164.5

Q ss_pred             CceeeeeccCCCcCcCccccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHH
Q psy7837           6 YPVLTLLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLF   85 (299)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~l   85 (299)
                      ......++++..|+|+.|+  |+.+...+|.|.+++++.+++++.|++++.+++.|.  ++||++|||||||+||.|+.+
T Consensus        15 v~~~~v~~A~~~VpR~~Fv--p~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~--l~pg~~VLeIGtGsGY~aAll   90 (209)
T PF01135_consen   15 VTDPRVLDAFRAVPREDFV--PPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEALD--LKPGDRVLEIGTGSGYQAALL   90 (209)
T ss_dssp             S-SHHHHHHHHHS-GGGCS--SCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTT--C-TT-EEEEES-TTSHHHHHH
T ss_pred             CCCHHHHHHHHhCCHHHhC--chhhhcCCCCCCCeeecceeechHHHHHHHHHHHHh--cCCCCEEEEecCCCcHHHHHH
Confidence            3455677899999999999  556888999999999999999999999999999999  999999999999999999999


Q ss_pred             HHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHH
Q psy7837          86 GAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNL  165 (299)
Q Consensus        86 a~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~  165 (299)
                      +..+++.|+|+++|+++.+.+.|++++..                                                   
T Consensus        91 a~lvg~~g~Vv~vE~~~~l~~~A~~~l~~---------------------------------------------------  119 (209)
T PF01135_consen   91 AHLVGPVGRVVSVERDPELAERARRNLAR---------------------------------------------------  119 (209)
T ss_dssp             HHHHSTTEEEEEEESBHHHHHHHHHHHHH---------------------------------------------------
T ss_pred             HHhcCccceEEEECccHHHHHHHHHHHHH---------------------------------------------------
Confidence            99999999999999999999999999987                                                   


Q ss_pred             HHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCCCcceeeeE
Q psy7837         166 CKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELL  245 (299)
Q Consensus       166 ~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~  245 (299)
                                     ....|+.++.+|....++..++||.|+++.....++..+.++|++||+|+++... ...+.+..+
T Consensus       120 ---------------~~~~nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ip~~l~~qL~~gGrLV~pi~~-~~~~~l~~~  183 (209)
T PF01135_consen  120 ---------------LGIDNVEVVVGDGSEGWPEEAPFDRIIVTAAVPEIPEALLEQLKPGGRLVAPIGQ-GGSQRLVRI  183 (209)
T ss_dssp             ---------------HTTHSEEEEES-GGGTTGGG-SEEEEEESSBBSS--HHHHHTEEEEEEEEEEESS-SSSEEEEEE
T ss_pred             ---------------hccCceeEEEcchhhccccCCCcCEEEEeeccchHHHHHHHhcCCCcEEEEEEcc-CCceEEEEE
Confidence                           3566999999999988877789999999999999999999999999999999988 667899999


Q ss_pred             EeecCCceEEEEecceeccccccccc
Q psy7837         246 DKFVNGSVKTTVIHPHVYIHELKSLE  271 (299)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (299)
                      .|..++.++.+...++.|+ |+.+.+
T Consensus       184 ~k~~~g~~~~~~~~~~~fv-pl~~~~  208 (209)
T PF01135_consen  184 TKKGDGEFSREELFPVRFV-PLVGGE  208 (209)
T ss_dssp             EEETTTEEEEEEEEEE----B-BSCC
T ss_pred             EEeCCCcEEEEEEeeEEEE-eccCCC
Confidence            9998899999999999999 998764

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.95  E-value=1.5e-26  Score=194.32  Aligned_cols=190  Identities=36%  Similarity=0.517  Sum_probs=168.2

Q ss_pred             ceeeeeccCCCcCcCccccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHH
Q psy7837           7 PVLTLLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFG   86 (299)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la   86 (299)
                      .....+++...|+|+.|+  |+.+...+|.|.+++++.|+.++.|.+.+.+++.+.  +++|++|||+|||+|+.+..++
T Consensus        20 ~~~~v~~a~~~v~R~~fv--p~~~~~~ay~d~~~~~~~g~~~~~p~~~~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la   95 (212)
T PRK13942         20 KSKKVIDALLKVPRHLFV--PEYLEEYAYVDTPLEIGYGQTISAIHMVAIMCELLD--LKEGMKVLEIGTGSGYHAAVVA   95 (212)
T ss_pred             CCHHHHHHHHcCCHhhcC--CchhhhcCcCCCCccCCCCCEeCcHHHHHHHHHHcC--CCCcCEEEEECCcccHHHHHHH
Confidence            345567788999999999  667888999999999999999999999999999987  8999999999999999999999


Q ss_pred             HHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHH
Q psy7837          87 AMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLC  166 (299)
Q Consensus        87 ~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~  166 (299)
                      +.+++.++++++|+++.+++.+++++..                                                    
T Consensus        96 ~~~~~~~~V~~vE~~~~~~~~a~~~l~~----------------------------------------------------  123 (212)
T PRK13942         96 EIVGKSGKVVTIERIPELAEKAKKTLKK----------------------------------------------------  123 (212)
T ss_pred             HhcCCCCEEEEEeCCHHHHHHHHHHHHH----------------------------------------------------
Confidence            9988888999999999999999998877                                                    


Q ss_pred             HHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCCCcceeeeEE
Q psy7837         167 KRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLD  246 (299)
Q Consensus       167 ~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~  246 (299)
                                    .+..+++++.+|....+...++||+|+++.....+++.+.++|||||+|++.....  .+.+..++
T Consensus       124 --------------~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~~~~~--~~~~~~~~  187 (212)
T PRK13942        124 --------------LGYDNVEVIVGDGTLGYEENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIPVGSY--SQELIRVE  187 (212)
T ss_pred             --------------cCCCCeEEEECCcccCCCcCCCcCEEEECCCcccchHHHHHhhCCCcEEEEEEcCC--CcEEEEEE
Confidence                          34568999999988766666889999999999999999999999999999998764  47777888


Q ss_pred             eecCCceEEEEecceecccccccc
Q psy7837         247 KFVNGSVKTTVIHPHVYIHELKSL  270 (299)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~  270 (299)
                      +.. +.+..+.++++.|+ |+.+.
T Consensus       188 ~~~-~~~~~~~~~~~~f~-~~~~~  209 (212)
T PRK13942        188 KDN-GKIIKKKLGEVAFV-PLIGK  209 (212)
T ss_pred             EEC-CEEEEEEeccEEEE-ecccC
Confidence            854 67999999999999 88775

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.94  E-value=8.3e-26  Score=188.92  Aligned_cols=189  Identities=26%  Similarity=0.373  Sum_probs=162.9

Q ss_pred             ceeeeeccCCCcCcCccccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHH
Q psy7837           7 PVLTLLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFG   86 (299)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la   86 (299)
                      .....+++...++|+.|+  |+.+...+|.|.++++..++.++.|.+.+.+++.+.  ++++++|||+|||+|+.+..++
T Consensus        16 ~~~~v~~a~~~vpR~~fv--~~~~~~~ay~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDiG~GsG~~~~~la   91 (205)
T PRK13944         16 KSERVKKAMLSVPREEFV--MPEYRMMAYEDRPLPLFAGATISAPHMVAMMCELIE--PRPGMKILEVGTGSGYQAAVCA   91 (205)
T ss_pred             CCHHHHHHHHhCCHhHcC--ChhHHhcCccCCCcccCCCCEechHHHHHHHHHhcC--CCCCCEEEEECcCccHHHHHHH
Confidence            345677889999999999  556788899999999999999999999999999886  7899999999999999999999


Q ss_pred             HHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHH
Q psy7837          87 AMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLC  166 (299)
Q Consensus        87 ~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~  166 (299)
                      +.+++.++++++|+++.+++.+++++...                                                   
T Consensus        92 ~~~~~~g~V~~iD~~~~~~~~a~~~l~~~---------------------------------------------------  120 (205)
T PRK13944         92 EAIERRGKVYTVEIVKELAIYAAQNIERL---------------------------------------------------  120 (205)
T ss_pred             HhcCCCCEEEEEeCCHHHHHHHHHHHHHc---------------------------------------------------
Confidence            99887789999999999999998888761                                                   


Q ss_pred             HHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCCCcceeeeEE
Q psy7837         167 KRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLD  246 (299)
Q Consensus       167 ~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~  246 (299)
                                    ....+++++.+|+...++..++||+|+++....++++++.++|+|||+|+++..... .+.+..++
T Consensus       121 --------------~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi~~~~~~-~~~~~~~~  185 (205)
T PRK13944        121 --------------GYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIPSALVRQLKDGGVLVIPVEEGV-GQVLYKVV  185 (205)
T ss_pred             --------------CCCCcEEEEECCcccCCccCCCccEEEEccCcchhhHHHHHhcCcCcEEEEEEcCCC-ceEEEEEE
Confidence                          223468999999987665557899999999999999999999999999999886543 46677788


Q ss_pred             eecCCceEEEEecceeccccc
Q psy7837         247 KFVNGSVKTTVIHPHVYIHEL  267 (299)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~  267 (299)
                      +. .+.+..+.+..+.|+ |+
T Consensus       186 ~~-~~~~~~~~~~~~~f~-pl  204 (205)
T PRK13944        186 KR-GEKVEKRAITYVLFV-PL  204 (205)
T ss_pred             Ee-CCEEEEEEeceEEEE-ec
Confidence            85 456999999999999 76

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.93  E-value=6.4e-25  Score=185.11  Aligned_cols=193  Identities=33%  Similarity=0.543  Sum_probs=167.6

Q ss_pred             ceeeeeccCCCcCcCccccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHH
Q psy7837           7 PVLTLLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFG   86 (299)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la   86 (299)
                      .....+++...++|+.|+  |+.+...+|.+.+++++.++.++.|.+.+.+++.+.  +++|++|||+|||+|+++..++
T Consensus        21 ~~~~v~~a~~~v~R~~f~--~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDiG~GsG~~a~~la   96 (215)
T TIGR00080        21 KSKRVIDALLSVPREEFV--PEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLE--LKPGMKVLEIGTGSGYQAAVLA   96 (215)
T ss_pred             CCHHHHHHHHhCChhhhC--CchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhC--CCCcCEEEEECCCccHHHHHHH
Confidence            345567788899999999  566788999999999999999999999999999987  8999999999999999999999


Q ss_pred             HHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHH
Q psy7837          87 AMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLC  166 (299)
Q Consensus        87 ~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~  166 (299)
                      +..+++++|+++|+++.+++.+++++..                                                    
T Consensus        97 ~~~~~~g~V~~vD~~~~~~~~A~~~~~~----------------------------------------------------  124 (215)
T TIGR00080        97 EIVGRDGLVVSIERIPELAEKAERRLRK----------------------------------------------------  124 (215)
T ss_pred             HHhCCCCEEEEEeCCHHHHHHHHHHHHH----------------------------------------------------
Confidence            9988888999999999999999988877                                                    


Q ss_pred             HHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCCCcceeeeEE
Q psy7837         167 KRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLD  246 (299)
Q Consensus       167 ~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~  246 (299)
                                    ....+++++.+|+........+||+|+++.....+++.+.+.|+|||++++....  ..+.+..+.
T Consensus       125 --------------~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~~~~--~~~~~~~~~  188 (215)
T TIGR00080       125 --------------LGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAGPKIPEALIDQLKEGGILVMPVGE--YLQVLKRAE  188 (215)
T ss_pred             --------------CCCCCeEEEECCcccCCcccCCCCEEEEcCCcccccHHHHHhcCcCcEEEEEEcC--CceEEEEEE
Confidence                          3457899999998876555578999999999999999999999999999999876  346667777


Q ss_pred             eecCCceEEEEecceeccccccccccc
Q psy7837         247 KFVNGSVKTTVIHPHVYIHELKSLEDQ  273 (299)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (299)
                      +. .+.+....+.++.|. |+..++.+
T Consensus       189 ~~-~~~~~~~~~~~~~~~-pl~~~~~~  213 (215)
T TIGR00080       189 KR-GGEIIIKDVEPVAFV-PLVGGEGF  213 (215)
T ss_pred             Ee-CCEEEEEEeeeEEEE-eCCCCccC
Confidence            64 566999999999999 99876543

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>KOG1661|consensus

Probab=99.91  E-value=1.9e-23  Score=167.49  Aligned_cols=206  Identities=33%  Similarity=0.568  Sum_probs=180.4

Q ss_pred             ccCCCcCcCccccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCC
Q psy7837          13 DIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGIS   92 (299)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~   92 (299)
                      .++..++|+.|.  |..++..+|.|.+..++.+..++.|++++.+++.|...++||-+.||+|+|+||++.+++..++.+
T Consensus        30 ~A~~a~dR~dy~--p~~~~~n~y~d~pq~~G~n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~  107 (237)
T KOG1661|consen   30 QAMRATDRSDYA--PRSERTNPYMDSPQKIGYNLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGAT  107 (237)
T ss_pred             HHHHhhchhhcc--ccccccCCCCCCccccCCceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCC
Confidence            456678899998  556778899999999999999999999999999999999999999999999999999999999988


Q ss_pred             ceE-EEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHH
Q psy7837          93 GKV-YTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMK  171 (299)
Q Consensus        93 g~v-~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~  171 (299)
                      |.. +|+|..+++++.+.+++.+.                                            +..++.    ..
T Consensus       108 g~~~~GIEh~~eLVe~Sk~nl~k~--------------------------------------------i~~~e~----~~  139 (237)
T KOG1661|consen  108 GGNVHGIEHIPELVEYSKKNLDKD--------------------------------------------ITTSES----SS  139 (237)
T ss_pred             CccccchhhhHHHHHHHHHHHHhh--------------------------------------------ccCchh----hh
Confidence            875 99999999999999999883                                            000000    11


Q ss_pred             HHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCCCcceeeeEEeecCC
Q psy7837         172 NIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNG  251 (299)
Q Consensus       172 ~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~  251 (299)
                      .        ....++.++.+|......+.++||.|++.+....+++++..+|++||+|+++.......+.+....+..++
T Consensus       140 ~--------~~~~~l~ivvGDgr~g~~e~a~YDaIhvGAaa~~~pq~l~dqL~~gGrllip~~~~~~~q~~~~~dk~~~g  211 (237)
T KOG1661|consen  140 K--------LKRGELSIVVGDGRKGYAEQAPYDAIHVGAAASELPQELLDQLKPGGRLLIPVGQDGGTQYLRQIDKNEDG  211 (237)
T ss_pred             h--------hccCceEEEeCCccccCCccCCcceEEEccCccccHHHHHHhhccCCeEEEeecccCceeEEEeecccccC
Confidence            1        23468889999999999888999999999999999999999999999999999988888999999999999


Q ss_pred             ceEEEEecceeccccccccccccccc
Q psy7837         252 SVKTTVIHPHVYIHELKSLEDQKRMF  277 (299)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (299)
                      ....+..+.+.|+ |++....+...|
T Consensus       212 ki~~~~~f~v~yv-Plt~~~~q~~~~  236 (237)
T KOG1661|consen  212 KIKLRTLFSVRYV-PLTSRESQPSRF  236 (237)
T ss_pred             ceeeeEeeceEEE-eccccccccCCC
Confidence            9999999999999 999887665544

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.90  E-value=3e-22  Score=168.57  Aligned_cols=188  Identities=29%  Similarity=0.449  Sum_probs=159.3

Q ss_pred             ceeeeeccCCCcCcCccccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHH
Q psy7837           7 PVLTLLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFG   86 (299)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la   86 (299)
                      ....++++...++|+.|+  |+.+...+|.+.++++..++.+++|.+.+.+++.+.  ++++.+|||+|||+|+.+..++
T Consensus        22 ~~~~~~~a~~~~~r~~f~--p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~--~~~~~~VLeiG~GsG~~t~~la   97 (212)
T PRK00312         22 LDERVLEAIEATPRELFV--PEAFKHKAYENRALPIGCGQTISQPYMVARMTELLE--LKPGDRVLEIGTGSGYQAAVLA   97 (212)
T ss_pred             CCHHHHHHHHcCCHhHcC--CchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcC--CCCCCEEEEECCCccHHHHHHH
Confidence            445677888899999999  556888899999999999999999999999998876  8899999999999999999888


Q ss_pred             HHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHH
Q psy7837          87 AMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLC  166 (299)
Q Consensus        87 ~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~  166 (299)
                      +..   ++++++|+++.+++.+++++..                                                    
T Consensus        98 ~~~---~~v~~vd~~~~~~~~a~~~~~~----------------------------------------------------  122 (212)
T PRK00312         98 HLV---RRVFSVERIKTLQWEAKRRLKQ----------------------------------------------------  122 (212)
T ss_pred             HHh---CEEEEEeCCHHHHHHHHHHHHH----------------------------------------------------
Confidence            775   3689999998888888888776                                                    


Q ss_pred             HHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCCCcceeeeEE
Q psy7837         167 KRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLD  246 (299)
Q Consensus       167 ~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~  246 (299)
                                    ....+++++.+|....+...++||+|+++....++++.+.+.|+|||.+++... ....+.+..+.
T Consensus       123 --------------~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~~~l~~~L~~gG~lv~~~~-~~~~~~~~~~~  187 (212)
T PRK00312        123 --------------LGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPEIPRALLEQLKEGGILVAPVG-GEEQQLLTRVR  187 (212)
T ss_pred             --------------CCCCceEEEECCcccCCCcCCCcCEEEEccCchhhhHHHHHhcCCCcEEEEEEc-CCCceEEEEEE
Confidence                          345579999999876555557899999999999999999999999999999998 44456667777


Q ss_pred             eecCCceEEEEecceecccccccc
Q psy7837         247 KFVNGSVKTTVIHPHVYIHELKSL  270 (299)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~  270 (299)
                      + .++.+..+.++++.|. |+..+
T Consensus       188 ~-~~~~~~~~~~~~~~~~-p~~~~  209 (212)
T PRK00312        188 K-RGGRFEREVLEEVRFV-PLVKG  209 (212)
T ss_pred             E-cCCeEEEEEEccEEEE-ecCCC
Confidence            6 5667999999999999 77754

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.85  E-value=4.6e-20  Score=162.93  Aligned_cols=186  Identities=27%  Similarity=0.409  Sum_probs=149.1

Q ss_pred             eeeccCCCcCcCccccCCCCC-Cccccccccccc-ccc---cccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHH
Q psy7837          10 TLLDIPHNIGHNAFMESPSDY-PVLTLLDIPHNI-GHN---AFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTL   84 (299)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~-~~~---~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~   84 (299)
                      ..+++...|+|+.|+  |+.+ ...+|.|.++++ ..+   +.++.|.+.+.+++.+.  ++++++|||+|||+|+++..
T Consensus        22 ~vl~a~~~vpRe~Fv--p~~~~~~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L~--i~~g~~VLDIG~GtG~~a~~   97 (322)
T PRK13943         22 HIAKAFLEVPREEFL--TKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGMRVLEIGGGTGYNAAV   97 (322)
T ss_pred             HHHHHHHcCCHHHcC--CcchhhhhccCCCcccccCCCcccccCCcHHHHHHHHHhcC--CCCCCEEEEEeCCccHHHHH
Confidence            567888999999999  5555 478999999886 555   57788999999988876  88999999999999999999


Q ss_pred             HHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChH
Q psy7837          85 FGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKN  164 (299)
Q Consensus        85 la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~  164 (299)
                      +++..+..++++++|+++.+++.+++++..                                                  
T Consensus        98 LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~--------------------------------------------------  127 (322)
T PRK13943         98 MSRVVGEKGLVVSVEYSRKICEIAKRNVRR--------------------------------------------------  127 (322)
T ss_pred             HHHhcCCCCEEEEEECCHHHHHHHHHHHHH--------------------------------------------------
Confidence            999887678899999999999999888876                                                  


Q ss_pred             HHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCC-Ccceee
Q psy7837         165 LCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHED-DIMTLE  243 (299)
Q Consensus       165 ~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~-~~~~~~  243 (299)
                                      .+..++.++.+|+.......++||+|+++.....+++.+.+.|+|||++++...... ..+...
T Consensus       128 ----------------~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~~~~~l~~~~~~~  191 (322)
T PRK13943        128 ----------------LGIENVIFVCGDGYYGVPEFAPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAF  191 (322)
T ss_pred             ----------------cCCCcEEEEeCChhhcccccCCccEEEECCchHHhHHHHHHhcCCCCEEEEEeCCccCCCCceE
Confidence                            345689999999876555556799999999988899999999999999999875431 223334


Q ss_pred             eEEeecCCceEEEEecceeccccc
Q psy7837         244 LLDKFVNGSVKTTVIHPHVYIHEL  267 (299)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~  267 (299)
                      ...+. .+.++......+.|. +.
T Consensus       192 ~~~r~-~~~~~~~~~~~~~~l-~~  213 (322)
T PRK13943        192 LFKKK-DPYLVGNYKLETRFI-KA  213 (322)
T ss_pred             EEEec-CCCceEEEEEEeeEE-cc
Confidence            44443 345777777777777 44

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.71  E-value=5e-17  Score=135.52  Aligned_cols=131  Identities=25%  Similarity=0.365  Sum_probs=116.5

Q ss_pred             ccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHH
Q psy7837          39 PHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET  118 (299)
Q Consensus        39 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~  118 (299)
                      ...+.++.++.+|.....++..+.  +.||++|+|+|+|||.+|++|+..+++.|+|+++|+.++..+.|++++...   
T Consensus        68 ~~~~~R~tQiIyPKD~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~---  142 (256)
T COG2519          68 LLSMKRRTQIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF---  142 (256)
T ss_pred             HHhCcCCCceecCCCHHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh---
Confidence            334678899999999999999998  999999999999999999999999999999999999999999999999983   


Q ss_pred             HHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC
Q psy7837         119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP  198 (299)
Q Consensus       119 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  198 (299)
                                                                                    ...+++.+..+|+.....
T Consensus       143 --------------------------------------------------------------~l~d~v~~~~~Dv~~~~~  160 (256)
T COG2519         143 --------------------------------------------------------------GLGDRVTLKLGDVREGID  160 (256)
T ss_pred             --------------------------------------------------------------ccccceEEEecccccccc
Confidence                                                                          344558999999987666


Q ss_pred             CCCCeeEEEecchhhh-HHHHHHHhccCCcEEEEEecCCC
Q psy7837         199 DAAPYDVIYISQAIRD-IPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       199 ~~~~fD~v~~~~~~~~-~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      +. .||.|+.+.+-+| ..+++.+.|+|||.+++..+..+
T Consensus       161 ~~-~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~ve  199 (256)
T COG2519         161 EE-DVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTVE  199 (256)
T ss_pred             cc-ccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence            53 8999999998766 67899999999999999998765

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.69  E-value=2.6e-16  Score=132.38  Aligned_cols=113  Identities=31%  Similarity=0.496  Sum_probs=95.9

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCe
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSK  134 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  134 (299)
                      ..+++.+.  +++|++|||+|||||-++..+++..+ +|+++++|+++.|++.+++....                    
T Consensus        41 ~~~i~~~~--~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~--------------------   97 (238)
T COG2226          41 RALISLLG--IKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKK--------------------   97 (238)
T ss_pred             HHHHHhhC--CCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhc--------------------
Confidence            33444444  55999999999999999999999998 89999999999999999988877                    


Q ss_pred             EEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhh
Q psy7837         135 VLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRD  214 (299)
Q Consensus       135 vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~  214 (299)
                                                                    .+..+++|+++|+...+.++++||+|.+...+++
T Consensus        98 ----------------------------------------------~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrn  131 (238)
T COG2226          98 ----------------------------------------------KGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRN  131 (238)
T ss_pred             ----------------------------------------------cCccceEEEEechhhCCCCCCccCEEEeeehhhc
Confidence                                                          3445599999999998888899999999998865


Q ss_pred             H------HHHHHHhccCCcEEEEEecCC
Q psy7837         215 I------PWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       215 ~------~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +      .+++.|+|||||++++.....
T Consensus       132 v~d~~~aL~E~~RVlKpgG~~~vle~~~  159 (238)
T COG2226         132 VTDIDKALKEMYRVLKPGGRLLVLEFSK  159 (238)
T ss_pred             CCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence            4      469999999999988876544

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.67  E-value=8.9e-16  Score=115.71  Aligned_cols=99  Identities=27%  Similarity=0.414  Sum_probs=81.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHH--cCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         131 YGSKVLDIGSGSGYLSALFAY--MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      |+.+|||+|||+|.++..+++  .+.+|+++|+|+.+++.+++++...    ....+++++++|+........+||+|++
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~~i~~~~~d~~~~~~~~~~~D~v~~   76 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEE----GLSDRITFVQGDAEFDPDFLEPFDLVIC   76 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHT----TTTTTEEEEESCCHGGTTTSSCEEEEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc----CCCCCeEEEECccccCcccCCCCCEEEE
Confidence            588999999999999999999  6899999999999999999999442    4678999999999212223356999999


Q ss_pred             cc-hhh---------hHHHHHHHhccCCcEEEEEe
Q psy7837         209 SQ-AIR---------DIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       209 ~~-~~~---------~~~~~~~~~L~~gG~lv~~~  233 (299)
                      .. ...         .+.+++.+.|+|||++++..
T Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   77 SGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             CSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            98 332         13568999999999999875

...

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.67  E-value=3e-16  Score=133.17  Aligned_cols=134  Identities=28%  Similarity=0.377  Sum_probs=106.2

Q ss_pred             ccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhH
Q psy7837          37 DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA  116 (299)
Q Consensus        37 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~  116 (299)
                      +-.+.+.++.++.+|.....++..+.  ++||++|+|.|+|+|.+|..|++.+++.|+|+++|+.++..+.|++++... 
T Consensus        12 ~~~~~l~rrtQIiYpkD~~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~-   88 (247)
T PF08704_consen   12 LWTLSLPRRTQIIYPKDISYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH-   88 (247)
T ss_dssp             HHHHTS-SSS----HHHHHHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT-
T ss_pred             HHHHhccCCcceeeCchHHHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc-
Confidence            34556788999999999999999998  999999999999999999999999999999999999999999999999883 


Q ss_pred             HHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC-
Q psy7837         117 ETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR-  195 (299)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-  195 (299)
                                                                                      +...++++.+.|+.. 
T Consensus        89 ----------------------------------------------------------------gl~~~v~~~~~Dv~~~  104 (247)
T PF08704_consen   89 ----------------------------------------------------------------GLDDNVTVHHRDVCEE  104 (247)
T ss_dssp             ----------------------------------------------------------------TCCTTEEEEES-GGCG
T ss_pred             ----------------------------------------------------------------CCCCCceeEecceecc
Confidence                                                                            455799999999963 


Q ss_pred             CCCC--CCCeeEEEecchhhh-HHHHHHHhc-cCCcEEEEEecCCC
Q psy7837         196 GYPD--AAPYDVIYISQAIRD-IPWHIVDQL-KLGGRMLFIKGHED  237 (299)
Q Consensus       196 ~~~~--~~~fD~v~~~~~~~~-~~~~~~~~L-~~gG~lv~~~~~~~  237 (299)
                      .+..  ...+|.|+.+.+-.| ..+.+.+.| ++||++++..+.-+
T Consensus       105 g~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie  150 (247)
T PF08704_consen  105 GFDEELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSPCIE  150 (247)
T ss_dssp             --STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEESSHH
T ss_pred             cccccccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCHH
Confidence            3422  267999999998877 678999999 89999999988754

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.67  E-value=5e-16  Score=131.79  Aligned_cols=113  Identities=32%  Similarity=0.502  Sum_probs=81.7

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCe
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSK  134 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  134 (299)
                      +.+++.+.  .++|.+|||+|||+|.++..+++.++++++++++|+++.|++.+++.+..                    
T Consensus        37 ~~~~~~~~--~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~--------------------   94 (233)
T PF01209_consen   37 RKLIKLLG--LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKR--------------------   94 (233)
T ss_dssp             SHHHHHHT----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHH--------------------
T ss_pred             HHHHhccC--CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHh--------------------
Confidence            34555554  78999999999999999999999998889999999999999999988877                    


Q ss_pred             EEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhh
Q psy7837         135 VLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRD  214 (299)
Q Consensus       135 vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~  214 (299)
                                                                    ....+++++++|+...+.++++||+|++...++.
T Consensus        95 ----------------------------------------------~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn  128 (233)
T PF01209_consen   95 ----------------------------------------------EGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRN  128 (233)
T ss_dssp             ----------------------------------------------TT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG
T ss_pred             ----------------------------------------------hCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHh
Confidence                                                          3455999999999987777799999999998865


Q ss_pred             HH------HHHHHhccCCcEEEEEecC
Q psy7837         215 IP------WHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       215 ~~------~~~~~~L~~gG~lv~~~~~  235 (299)
                      ++      ++++++|||||++++....
T Consensus       129 ~~d~~~~l~E~~RVLkPGG~l~ile~~  155 (233)
T PF01209_consen  129 FPDRERALREMYRVLKPGGRLVILEFS  155 (233)
T ss_dssp             -SSHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             hCCHHHHHHHHHHHcCCCeEEEEeecc
Confidence            44      6999999999999886543

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.65  E-value=6.1e-15  Score=138.73  Aligned_cols=100  Identities=28%  Similarity=0.293  Sum_probs=83.4

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      .++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++...      ...++++..+|......+.++||+|++
T Consensus       265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~------~~~~v~~~~~d~~~~~~~~~~fD~I~s  338 (475)
T PLN02336        265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIG------RKCSVEFEVADCTKKTYPDNSFDVIYS  338 (475)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhc------CCCceEEEEcCcccCCCCCCCEEEEEE
Confidence            35679999999999999988875 78999999999999999988653      345799999998875545578999999


Q ss_pred             cchhhhH------HHHHHHhccCCcEEEEEecC
Q psy7837         209 SQAIRDI------PWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       209 ~~~~~~~------~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ..++.++      .+++.++|+|||.+++....
T Consensus       339 ~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  371 (475)
T PLN02336        339 RDTILHIQDKPALFRSFFKWLKPGGKVLISDYC  371 (475)
T ss_pred             CCcccccCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence            8887644      46899999999999998643

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.62  E-value=7.1e-15  Score=117.63  Aligned_cols=165  Identities=24%  Similarity=0.286  Sum_probs=122.9

Q ss_pred             ccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhh
Q psy7837          47 FMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFY  126 (299)
Q Consensus        47 ~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~  126 (299)
                      .+..+.+.+..+..|.  +++|+.++|||||+|..+...+ ..++.++++++|.+++.++..+++..+            
T Consensus        16 p~TK~EIRal~ls~L~--~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~------------   80 (187)
T COG2242          16 PMTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAAR------------   80 (187)
T ss_pred             CCcHHHHHHHHHHhhC--CCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHH------------
Confidence            3566677777788887  9999999999999999999999 888899999999999999999988887            


Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI  206 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  206 (299)
                                                                            .+.+|++++.+++...+....++|.|
T Consensus        81 ------------------------------------------------------fg~~n~~vv~g~Ap~~L~~~~~~dai  106 (187)
T COG2242          81 ------------------------------------------------------FGVDNLEVVEGDAPEALPDLPSPDAI  106 (187)
T ss_pred             ------------------------------------------------------hCCCcEEEEeccchHhhcCCCCCCEE
Confidence                                                                  46889999999998766554579999


Q ss_pred             Eecch--hhhHHHHHHHhccCCcEEEEEecCCCCcceeeeEEeecCCceEEEEecceeccccccccccccccceecCCCC
Q psy7837         207 YISQA--IRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYNTPP  284 (299)
Q Consensus       207 ~~~~~--~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (299)
                      |+...  ++.+.+.+...||+||++|+.....+....+....+...+. +...+        ..+.......|+.+...+
T Consensus       107 FIGGg~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~-ei~~v--------~is~~~~lg~~~~~~~~n  177 (187)
T COG2242         107 FIGGGGNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR-EIVQV--------QISRGKPLGGGTMFRPVN  177 (187)
T ss_pred             EECCCCCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc-eEEEE--------EeecceeccCeeEeecCC
Confidence            99886  45678899999999999999987765432222222222221 22221        112344555666666666


Q ss_pred             CCccc
Q psy7837         285 PQMDL  289 (299)
Q Consensus       285 ~~~~~  289 (299)
                      |++.|
T Consensus       178 Pv~i~  182 (187)
T COG2242         178 PVFII  182 (187)
T ss_pred             CEEEE
Confidence            66433

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.60  E-value=1.8e-15  Score=125.33  Aligned_cols=102  Identities=23%  Similarity=0.324  Sum_probs=87.4

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS  209 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  209 (299)
                      .++.+|||+|||-|.++..+|+.|+.|+++|+++.+++.|+..+..      ...++++.+....+.....++||+|+|.
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e------~gv~i~y~~~~~edl~~~~~~FDvV~cm  131 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALE------SGVNIDYRQATVEDLASAGGQFDVVTCM  131 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhh------ccccccchhhhHHHHHhcCCCccEEEEh
Confidence            5699999999999999999999999999999999999999998776      2334667777766654444789999999


Q ss_pred             chhhhHH------HHHHHhccCCcEEEEEecCCC
Q psy7837         210 QAIRDIP------WHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       210 ~~~~~~~------~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      .+++|++      ..+.+++||||.+++++.+..
T Consensus       132 EVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt  165 (243)
T COG2227         132 EVLEHVPDPESFLRACAKLVKPGGILFLSTINRT  165 (243)
T ss_pred             hHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence            9998876      368999999999999987754

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.59  E-value=3.5e-14  Score=116.40  Aligned_cols=105  Identities=24%  Similarity=0.277  Sum_probs=87.6

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCe
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPY  203 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  203 (299)
                      ...+.++.+|||+|||+|..+..+++.  +.+|+++|.++.+++.++++++.     ....+++++.+|+..... .++|
T Consensus        40 ~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~-----~~l~~i~~~~~d~~~~~~-~~~f  113 (187)
T PRK00107         40 APYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAE-----LGLKNVTVVHGRAEEFGQ-EEKF  113 (187)
T ss_pred             HhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH-----cCCCCEEEEeccHhhCCC-CCCc
Confidence            334455899999999999999988864  67899999999999999999988     345569999999887544 5789


Q ss_pred             eEEEecch--hhhHHHHHHHhccCCcEEEEEecCC
Q psy7837         204 DVIYISQA--IRDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       204 D~v~~~~~--~~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      |+|+++..  +..+.+.+.++|+|||++++..+..
T Consensus       114 DlV~~~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~  148 (187)
T PRK00107        114 DVVTSRAVASLSDLVELCLPLLKPGGRFLALKGRD  148 (187)
T ss_pred             cEEEEccccCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence            99999764  3467789999999999999997664

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.58  E-value=4.6e-14  Score=122.30  Aligned_cols=109  Identities=28%  Similarity=0.407  Sum_probs=89.4

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY  144 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~  144 (299)
                      +.++++|||+|||+|.++..+++..++.++++++|+++.|++.+++.....                             
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~-----------------------------  121 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELK-----------------------------  121 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhh-----------------------------
Confidence            788999999999999999999998877789999999999999887765320                             


Q ss_pred             HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhH------HHH
Q psy7837         145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDI------PWH  218 (299)
Q Consensus       145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~------~~~  218 (299)
                                                   ..     ....+++++++|+...+.++++||+|++..+++++      ..+
T Consensus       122 -----------------------------~~-----~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~e  167 (261)
T PLN02233        122 -----------------------------AK-----SCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQE  167 (261)
T ss_pred             -----------------------------hh-----ccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHH
Confidence                                         00     23458999999998766666889999998887654      468


Q ss_pred             HHHhccCCcEEEEEecCC
Q psy7837         219 IVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       219 ~~~~L~~gG~lv~~~~~~  236 (299)
                      +.++|||||++++.....
T Consensus       168 i~rvLkpGG~l~i~d~~~  185 (261)
T PLN02233        168 MYRVLKPGSRVSILDFNK  185 (261)
T ss_pred             HHHHcCcCcEEEEEECCC
Confidence            999999999999986554

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.57  E-value=1.7e-14  Score=127.80  Aligned_cols=104  Identities=21%  Similarity=0.325  Sum_probs=88.0

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      ..++.+|||||||+|.++..+++.|.+|+++|.++.+++.++++.+..    ....+++++++|+.......++||+|++
T Consensus       129 ~~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~----~~~~~i~~~~~dae~l~~~~~~FD~Vi~  204 (322)
T PLN02396        129 PFEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMD----PVTSTIEYLCTTAEKLADEGRKFDAVLS  204 (322)
T ss_pred             CCCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc----CcccceeEEecCHHHhhhccCCCCEEEE
Confidence            356789999999999999999999999999999999999999886552    2335899999998765445578999999


Q ss_pred             cchhhhHH------HHHHHhccCCcEEEEEecCC
Q psy7837         209 SQAIRDIP------WHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       209 ~~~~~~~~------~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ..+++++.      +++.++|||||.+++.+.+.
T Consensus       205 ~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr  238 (322)
T PLN02396        205 LEVIEHVANPAEFCKSLSALTIPNGATVLSTINR  238 (322)
T ss_pred             hhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence            99987654      58999999999999997654

>PLN02244 tocopherol O-methyltransferase

Probab=99.56  E-value=6e-14  Score=126.10  Aligned_cols=102  Identities=20%  Similarity=0.262  Sum_probs=87.2

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      .++.+|||+|||+|.++..+++. +.+|+++|+++.+++.++++++..    +...+++++++|+.....+.++||+|++
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~----g~~~~v~~~~~D~~~~~~~~~~FD~V~s  192 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQ----GLSDKVSFQVADALNQPFEDGQFDLVWS  192 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc----CCCCceEEEEcCcccCCCCCCCccEEEE
Confidence            67889999999999999999886 789999999999999999988763    3446899999999876556689999999


Q ss_pred             cchhhhH------HHHHHHhccCCcEEEEEecC
Q psy7837         209 SQAIRDI------PWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       209 ~~~~~~~------~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ..+++++      .+++.++|||||.+++....
T Consensus       193 ~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~  225 (340)
T PLN02244        193 MESGEHMPDKRKFVQELARVAAPGGRIIIVTWC  225 (340)
T ss_pred             CCchhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence            8887654      36899999999999997643

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.56  E-value=2.6e-14  Score=103.95  Aligned_cols=88  Identities=28%  Similarity=0.462  Sum_probs=74.7

Q ss_pred             EEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhh
Q psy7837         136 LDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRD  214 (299)
Q Consensus       136 LDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~  214 (299)
                      ||+|||+|..+..+++. +.+|+++|+++.+++.++++...        .++.+..+|....+.++++||+|++...+++
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~--------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~   72 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN--------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHH   72 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT--------STEEEEESBTTSSSS-TT-EEEEEEESHGGG
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc--------cCchheeehHHhCccccccccccccccceee
Confidence            89999999999999999 88999999999999999998644        4566999999987777799999999999876


Q ss_pred             H------HHHHHHhccCCcEEEE
Q psy7837         215 I------PWHIVDQLKLGGRMLF  231 (299)
Q Consensus       215 ~------~~~~~~~L~~gG~lv~  231 (299)
                      +      .+++.++|||||++++
T Consensus        73 ~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   73 LEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             SSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccCHHHHHHHHHHHcCcCeEEeC
Confidence            5      3589999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.55  E-value=1e-13  Score=118.10  Aligned_cols=114  Identities=19%  Similarity=0.336  Sum_probs=91.8

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCe
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSK  134 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  134 (299)
                      ..+++.+.  ++++.+|||+|||+|.++..+++..++.++++++|+++.+++.+++++..                    
T Consensus        35 ~~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~--------------------   92 (231)
T TIGR02752        35 KDTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKD--------------------   92 (231)
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHh--------------------
Confidence            34455554  67899999999999999999999888778999999999999888887765                    


Q ss_pred             EEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhh
Q psy7837         135 VLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRD  214 (299)
Q Consensus       135 vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~  214 (299)
                                                                    ....+++++.+|........++||+|+++.++++
T Consensus        93 ----------------------------------------------~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  126 (231)
T TIGR02752        93 ----------------------------------------------AGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRN  126 (231)
T ss_pred             ----------------------------------------------cCCCceEEEEechhcCCCCCCCccEEEEeccccc
Confidence                                                          3446899999998765445578999999877654


Q ss_pred             ------HHHHHHHhccCCcEEEEEecCC
Q psy7837         215 ------IPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       215 ------~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                            +.+++.++|+|||.+++.....
T Consensus       127 ~~~~~~~l~~~~~~Lk~gG~l~~~~~~~  154 (231)
T TIGR02752       127 VPDYMQVLREMYRVVKPGGKVVCLETSQ  154 (231)
T ss_pred             CCCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence                  3467899999999999876543

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.54  E-value=1e-13  Score=115.15  Aligned_cols=98  Identities=22%  Similarity=0.177  Sum_probs=81.6

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      ..++.+|||+|||+|..+..+++.|.+|+++|+|+.+++.++++++.     ....++++...|+...... ++||+|++
T Consensus        28 ~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~-----~~~~~v~~~~~d~~~~~~~-~~fD~I~~  101 (197)
T PRK11207         28 VVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAA-----ENLDNLHTAVVDLNNLTFD-GEYDFILS  101 (197)
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH-----cCCCcceEEecChhhCCcC-CCcCEEEE
Confidence            45678999999999999999999999999999999999999998877     3456788999998764333 57999999


Q ss_pred             cchhhh--------HHHHHHHhccCCcEEEEE
Q psy7837         209 SQAIRD--------IPWHIVDQLKLGGRMLFI  232 (299)
Q Consensus       209 ~~~~~~--------~~~~~~~~L~~gG~lv~~  232 (299)
                      ..++++        +.+++.++|+|||.+++.
T Consensus       102 ~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207        102 TVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             ecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            887643        335889999999996554

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.53  E-value=8.4e-14  Score=110.95  Aligned_cols=100  Identities=25%  Similarity=0.432  Sum_probs=84.2

Q ss_pred             CCCCeEEEEcCCCcHHHHHHH-Hc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCC--CCee
Q psy7837         130 VYGSKVLDIGSGSGYLSALFA-YM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDA--APYD  204 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la-~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~fD  204 (299)
                      .++.+|||+|||+|.++..++ ..  +.+++++|+++.+++.++++++.     ....+++|+++|+.. +...  +.||
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~-----~~~~ni~~~~~d~~~-l~~~~~~~~D   75 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKE-----LGLDNIEFIQGDIED-LPQELEEKFD   75 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHH-----TTSTTEEEEESBTTC-GCGCSSTTEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccc-----ccccccceEEeehhc-cccccCCCee
Confidence            357899999999999999999 44  67899999999999999999887     456699999999998 3321  6899


Q ss_pred             EEEecchhhh------HHHHHHHhccCCcEEEEEecC
Q psy7837         205 VIYISQAIRD------IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       205 ~v~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      +|++..++++      +.+++.+.|+++|.+++....
T Consensus        76 ~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   76 IIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             EEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            9999987754      346899999999999998765

...

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.52  E-value=1.5e-13  Score=118.98  Aligned_cols=104  Identities=18%  Similarity=0.279  Sum_probs=86.9

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-CCCCCeeEEEe
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-PDAAPYDVIYI  208 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~  208 (299)
                      .++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.|+++++..    +...+++++++|+.... ...++||+|++
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~----g~~~~v~~~~~d~~~l~~~~~~~fD~V~~  118 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAK----GVSDNMQFIHCAAQDIAQHLETPVDLILF  118 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc----CCccceEEEEcCHHHHhhhcCCCCCEEEe
Confidence            45679999999999999999999999999999999999999998763    33468899999987532 23468999999


Q ss_pred             cchhhhH------HHHHHHhccCCcEEEEEecCCC
Q psy7837         209 SQAIRDI------PWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       209 ~~~~~~~------~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      ..+++++      .+++.++|||||++++...+..
T Consensus       119 ~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~  153 (255)
T PRK11036        119 HAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNAN  153 (255)
T ss_pred             hhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence            9988765      3589999999999998765543

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.51  E-value=3.3e-13  Score=110.41  Aligned_cols=101  Identities=25%  Similarity=0.270  Sum_probs=82.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      ++.+|||+|||+|.++..++..  +.+|+++|.++.+++.++++++.     ....+++++++|+... ...++||+|++
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~-----~~~~~i~~i~~d~~~~-~~~~~fD~I~s  115 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAE-----LGLNNVEIVNGRAEDF-QHEEQFDVITS  115 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH-----hCCCCeEEEecchhhc-cccCCccEEEe
Confidence            4889999999999999998866  46799999999999999999887     3456799999998874 33468999999


Q ss_pred             cch--hhhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         209 SQA--IRDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       209 ~~~--~~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      +..  +..+.+.+.++|+|||.+++......
T Consensus       116 ~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~  146 (181)
T TIGR00138       116 RALASLNVLLELTLNLLKVGGYFLAYKGKKY  146 (181)
T ss_pred             hhhhCHHHHHHHHHHhcCCCCEEEEEcCCCc
Confidence            862  23344678999999999999876544

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.51  E-value=2.7e-13  Score=117.71  Aligned_cols=108  Identities=27%  Similarity=0.265  Sum_probs=82.7

Q ss_pred             HHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC
Q psy7837         121 KRINFYGHLVYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD  199 (299)
Q Consensus       121 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  199 (299)
                      +.+.....+.+|.+|||||||.|.++..+++. |++|+++++|++..+.++++++..    +...++++...|..+..  
T Consensus        52 ~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~----gl~~~v~v~~~D~~~~~--  125 (273)
T PF02353_consen   52 DLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREA----GLEDRVEVRLQDYRDLP--  125 (273)
T ss_dssp             HHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCS----TSSSTEEEEES-GGG----
T ss_pred             HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhc----CCCCceEEEEeeccccC--
Confidence            34566668899999999999999999999988 999999999999999999999874    45678999999987643  


Q ss_pred             CCCeeEEEecchhhhH--------HHHHHHhccCCcEEEEEecC
Q psy7837         200 AAPYDVIYISQAIRDI--------PWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       200 ~~~fD~v~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~~  235 (299)
                       .+||.|++..+++++        .+.+.++|+|||++++....
T Consensus       126 -~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~  168 (273)
T PF02353_consen  126 -GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT  168 (273)
T ss_dssp             --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred             -CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence             379999999888765        36899999999999987543

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.51  E-value=4.8e-13  Score=108.53  Aligned_cols=101  Identities=30%  Similarity=0.398  Sum_probs=83.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCCe--EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGAK--VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~~--v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      ++.+|||+|||+|.+++.+++.+..  |+++|+++.+++.+++|++.+     ...+++++..|...... ..+||+|++
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n-----~~~~v~~~~~d~~~~~~-~~~fD~Iv~  104 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERN-----GLENVEVVQSDLFEALP-DGKFDLIVS  104 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHT-----TCTTEEEEESSTTTTCC-TTCEEEEEE
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc-----Ccccccccccccccccc-ccceeEEEE
Confidence            5889999999999999999998654  999999999999999999984     44459999999887555 478999999


Q ss_pred             cchhh-----------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837         209 SQAIR-----------DIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       209 ~~~~~-----------~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      +++++           .+.+...+.|+|||.+++......
T Consensus       105 NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~  144 (170)
T PF05175_consen  105 NPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHL  144 (170)
T ss_dssp             ---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred             ccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCC
Confidence            98753           344678999999999988776554

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.51  E-value=3.9e-13  Score=110.86  Aligned_cols=101  Identities=22%  Similarity=0.253  Sum_probs=82.4

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      ...++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.++++++.     ....+++++.+|.....  ..+||+
T Consensus        28 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~-----~~~~~i~~~~~d~~~~~--~~~~D~  100 (187)
T PRK08287         28 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQR-----FGCGNIDIIPGEAPIEL--PGKADA  100 (187)
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-----hCCCCeEEEecCchhhc--CcCCCE
Confidence            4567889999999999999999886  36899999999999999999887     34457899999875432  257999


Q ss_pred             EEecchh---hhHHHHHHHhccCCcEEEEEecC
Q psy7837         206 IYISQAI---RDIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       206 v~~~~~~---~~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      |+++...   ..+.+.+.++|+|||++++....
T Consensus       101 v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~  133 (187)
T PRK08287        101 IFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFIL  133 (187)
T ss_pred             EEECCCccCHHHHHHHHHHhcCCCeEEEEEEec
Confidence            9997753   44667889999999999987543

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.50  E-value=2.7e-13  Score=116.21  Aligned_cols=140  Identities=28%  Similarity=0.316  Sum_probs=104.9

Q ss_pred             ccccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCC
Q psy7837          22 AFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHI  101 (299)
Q Consensus        22 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~  101 (299)
                      .|+++++.|.+..|.+....+...|.    .....+++.|.  ++||++|||||||.|.++.++++..+  .+|+|+++|
T Consensus        33 l~Ld~~~~Yscayf~~~~~tL~eAQ~----~k~~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y~--v~V~GvTlS  104 (283)
T COG2230          33 LFLDPSMTYSCAYFEDPDMTLEEAQR----AKLDLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLS  104 (283)
T ss_pred             HhcCCCCceeeEEeCCCCCChHHHHH----HHHHHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHcC--CEEEEeeCC
Confidence            35677778888888877666655542    22344445554  89999999999999999999998763  467777777


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCccc
Q psy7837         102 PELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIA  181 (299)
Q Consensus       102 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~  181 (299)
                      +...+.+++.+...                                                                 +
T Consensus       105 ~~Q~~~~~~r~~~~-----------------------------------------------------------------g  119 (283)
T COG2230         105 EEQLAYAEKRIAAR-----------------------------------------------------------------G  119 (283)
T ss_pred             HHHHHHHHHHHHHc-----------------------------------------------------------------C
Confidence            77777777766652                                                                 4


Q ss_pred             CCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHH--------HHHHHhccCCcEEEEEecCCC
Q psy7837         182 LAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIP--------WHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       182 ~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~--------~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      ...+++++..|..+..   +.||.|++...++++.        +.+.++|+|||.+++-.....
T Consensus       120 l~~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~  180 (283)
T COG2230         120 LEDNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGP  180 (283)
T ss_pred             CCcccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCC
Confidence            4569999999987754   3399999999987654        578999999999998765543

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.49  E-value=1.2e-12  Score=100.13  Aligned_cols=113  Identities=28%  Similarity=0.376  Sum_probs=86.5

Q ss_pred             hHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCC
Q psy7837          53 DHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYG  132 (299)
Q Consensus        53 ~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~  132 (299)
                      +...+++.+.  +.++++|||+|||+|.++..+++..+. ++++++|.++.+++.+++++..                  
T Consensus         7 ~~~~~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~------------------   65 (124)
T TIGR02469         7 VRALTLSKLR--LRPGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARR------------------   65 (124)
T ss_pred             HHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHH------------------
Confidence            3344555554  677889999999999999999987654 7889999998888888877766                  


Q ss_pred             CeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-CCCCCeeEEEecch
Q psy7837         133 SKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-PDAAPYDVIYISQA  211 (299)
Q Consensus       133 ~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~  211 (299)
                                                                      ....+++++.+|+.... ....+||.|++...
T Consensus        66 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~   97 (124)
T TIGR02469        66 ------------------------------------------------FGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS   97 (124)
T ss_pred             ------------------------------------------------hCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence                                                            23457888888866422 22357999999875


Q ss_pred             hh---hHHHHHHHhccCCcEEEEEec
Q psy7837         212 IR---DIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       212 ~~---~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      ..   .+.+.+.+.|+|||.+++..-
T Consensus        98 ~~~~~~~l~~~~~~Lk~gG~li~~~~  123 (124)
T TIGR02469        98 GGLLQEILEAIWRRLRPGGRIVLNAI  123 (124)
T ss_pred             chhHHHHHHHHHHHcCCCCEEEEEec
Confidence            43   467899999999999998753

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.49  E-value=3.3e-13  Score=111.98  Aligned_cols=98  Identities=21%  Similarity=0.215  Sum_probs=78.1

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      ..++.+|||+|||+|.++..++++|.+|+++|+|+.+++.++++++.+     .. ++.+...|......+ ++||+|++
T Consensus        28 ~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~-----~~-~v~~~~~d~~~~~~~-~~fD~I~~  100 (195)
T TIGR00477        28 TVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARE-----NL-PLRTDAYDINAAALN-EDYDFIFS  100 (195)
T ss_pred             cCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHh-----CC-CceeEeccchhcccc-CCCCEEEE
Confidence            345689999999999999999999999999999999999999887662     22 377777777543333 57999999


Q ss_pred             cchhhh--------HHHHHHHhccCCcEEEEEe
Q psy7837         209 SQAIRD--------IPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       209 ~~~~~~--------~~~~~~~~L~~gG~lv~~~  233 (299)
                      ..++++        +.+++.++|+|||.+++..
T Consensus       101 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~  133 (195)
T TIGR00477       101 TVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA  133 (195)
T ss_pred             ecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence            877643        3458899999999966553

Part of a tellurite-reducing operon tehA and tehB

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.49  E-value=3e-13  Score=112.53  Aligned_cols=119  Identities=24%  Similarity=0.376  Sum_probs=92.1

Q ss_pred             cchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccC
Q psy7837          51 PSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLV  130 (299)
Q Consensus        51 p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~  130 (299)
                      ..+....+..+.  +.++++|||+|||+|.++..+++.+++.++++++|+++.+++.+++++...               
T Consensus        26 ~~~r~~~l~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~---------------   88 (198)
T PRK00377         26 EEIRALALSKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF---------------   88 (198)
T ss_pred             HHHHHHHHHHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh---------------
Confidence            334444455554  889999999999999999999988877789999999999999888887761               


Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC-CCCeeEEEec
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD-AAPYDVIYIS  209 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~~~  209 (299)
                                                                        +...++.++.+|....... .+.||.|+++
T Consensus        89 --------------------------------------------------g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~  118 (198)
T PRK00377         89 --------------------------------------------------GVLNNIVLIKGEAPEILFTINEKFDRIFIG  118 (198)
T ss_pred             --------------------------------------------------CCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence                                                              2246788888888653322 2579999995


Q ss_pred             ch---hhhHHHHHHHhccCCcEEEEEecCC
Q psy7837         210 QA---IRDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       210 ~~---~~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ..   +..+.+.+.++|+|||++++.....
T Consensus       119 ~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  148 (198)
T PRK00377        119 GGSEKLKEIISASWEIIKKGGRIVIDAILL  148 (198)
T ss_pred             CCcccHHHHHHHHHHHcCCCcEEEEEeecH
Confidence            54   4556788999999999999866544

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.49  E-value=2.3e-13  Score=117.76  Aligned_cols=95  Identities=22%  Similarity=0.271  Sum_probs=80.0

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      ...++.+|||+|||+|.++..+++.  +.+|+++|+|+.+++.++++            +++++++|+.... ..++||+
T Consensus        26 ~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~~~~-~~~~fD~   92 (255)
T PRK14103         26 GAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------------GVDARTGDVRDWK-PKPDTDV   92 (255)
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------------CCcEEEcChhhCC-CCCCceE
Confidence            4467899999999999999999887  67899999999999998653            5778999987643 3478999


Q ss_pred             EEecchhhhHH------HHHHHhccCCcEEEEEecC
Q psy7837         206 IYISQAIRDIP------WHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       206 v~~~~~~~~~~------~~~~~~L~~gG~lv~~~~~  235 (299)
                      |+++.++++++      +++.++|||||.+++..+.
T Consensus        93 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~  128 (255)
T PRK14103         93 VVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPG  128 (255)
T ss_pred             EEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence            99999987654      4789999999999998654

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.48  E-value=2.8e-14  Score=115.53  Aligned_cols=154  Identities=21%  Similarity=0.282  Sum_probs=108.2

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      .+.+..+|.|+|||+|..+..++++  ++.++|+|.|+.|++.|+++          ..+++|..+|+....+ ..+.|+
T Consensus        27 p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r----------lp~~~f~~aDl~~w~p-~~~~dl   95 (257)
T COG4106          27 PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR----------LPDATFEEADLRTWKP-EQPTDL   95 (257)
T ss_pred             CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh----------CCCCceecccHhhcCC-CCccch
Confidence            4466789999999999999999987  78999999999999999765          4678999999987544 367999


Q ss_pred             EEecchhhhHHH------HHHHhccCCcEEEEEecCCCCcceeee---------EEee-cCCceEEEEecc-eecccccc
Q psy7837         206 IYISQAIRDIPW------HIVDQLKLGGRMLFIKGHEDDIMTLEL---------LDKF-VNGSVKTTVIHP-HVYIHELK  268 (299)
Q Consensus       206 v~~~~~~~~~~~------~~~~~L~~gG~lv~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~-~~~~~~~~  268 (299)
                      +++|++++++++      ++...|+|||.|.+..+.......-..         +... .+..+....+.. ..|..-+.
T Consensus        96 lfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lLa  175 (257)
T COG4106          96 LFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELLA  175 (257)
T ss_pred             hhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHhC
Confidence            999999988774      788999999999999876543311000         1111 111122222222 22332344


Q ss_pred             ccccccccce-----ecCCCCCCcccccc
Q psy7837         269 SLEDQKRMFH-----YYNTPPPQMDLFDG  292 (299)
Q Consensus       269 ~~~~~~~~~~-----~~~~~~~~~~~~~~  292 (299)
                      ........||     .+..-+++++|+++
T Consensus       176 ~~~~rvDiW~T~Y~h~l~~a~aIvdWvkg  204 (257)
T COG4106         176 PLACRVDIWHTTYYHQLPGADAIVDWVKG  204 (257)
T ss_pred             cccceeeeeeeeccccCCCccchhhheec
Confidence            4556667785     33345678888875

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.47  E-value=4.1e-13  Score=117.14  Aligned_cols=98  Identities=26%  Similarity=0.330  Sum_probs=75.2

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      ..++++|||+|||||.+++..+++|+. |+++|+++.+++.+++|++.|    +...++.+.  .... .. ..+||+|+
T Consensus       159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N----~~~~~~~v~--~~~~-~~-~~~~dlvv  230 (295)
T PF06325_consen  159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELN----GVEDRIEVS--LSED-LV-EGKFDLVV  230 (295)
T ss_dssp             SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHT----T-TTCEEES--CTSC-TC-CS-EEEEE
T ss_pred             ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHc----CCCeeEEEE--Eecc-cc-cccCCEEE
Confidence            456899999999999999999999985 999999999999999999986    344455442  1111 22 27899999


Q ss_pred             ecchh---hhHHHHHHHhccCCcEEEEEec
Q psy7837         208 ISQAI---RDIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       208 ~~~~~---~~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      +|-..   ..+.+.+.++|+|||.++++--
T Consensus       231 ANI~~~vL~~l~~~~~~~l~~~G~lIlSGI  260 (295)
T PF06325_consen  231 ANILADVLLELAPDIASLLKPGGYLILSGI  260 (295)
T ss_dssp             EES-HHHHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred             ECCCHHHHHHHHHHHHHhhCCCCEEEEccc
Confidence            88754   4455788999999999999854

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=1.1e-12  Score=113.40  Aligned_cols=158  Identities=25%  Similarity=0.260  Sum_probs=94.4

Q ss_pred             CCCceeeeeccCCCcCcCccccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHH
Q psy7837           4 EKYPVLTLLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTT   83 (299)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~   83 (299)
                      ++|..+..+..+.-+.+++.-..+.......-.|.-+..+.|.   .|. ....++.|...+++|.+|||+|||||.+++
T Consensus       103 k~~~~P~rig~~f~I~Psw~~~~~~~~~~~i~lDPGlAFGTG~---HpT-T~lcL~~Le~~~~~g~~vlDvGcGSGILaI  178 (300)
T COG2264         103 KKYFHPVRIGERFVIVPSWREYPEPSDELNIELDPGLAFGTGT---HPT-TSLCLEALEKLLKKGKTVLDVGCGSGILAI  178 (300)
T ss_pred             HhcCCcEEeeeeEEECCCCccCCCCCCceEEEEccccccCCCC---Chh-HHHHHHHHHHhhcCCCEEEEecCChhHHHH
Confidence            3556666666666666644322111122223333333444333   232 367788888888999999999999999887


Q ss_pred             HHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCCh
Q psy7837          84 LFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVK  163 (299)
Q Consensus        84 ~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~  163 (299)
                      ..++...  ..++|+|+++..++.++++..                                                  
T Consensus       179 Aa~kLGA--~~v~g~DiDp~AV~aa~eNa~--------------------------------------------------  206 (300)
T COG2264         179 AAAKLGA--KKVVGVDIDPQAVEAARENAR--------------------------------------------------  206 (300)
T ss_pred             HHHHcCC--ceEEEecCCHHHHHHHHHHHH--------------------------------------------------
Confidence            7665432  245555555555555555544                                                  


Q ss_pred             HHHHHHHHHHHhcCCcccCCCC-eEEEEcCCCCCCCCCCCeeEEEecch---hhhHHHHHHHhccCCcEEEEEec
Q psy7837         164 NLCKRAMKNIRRGAPAIALAEN-FEFVCADGRRGYPDAAPYDVIYISQA---IRDIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       164 ~~~~~a~~~~~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~v~~~~~---~~~~~~~~~~~L~~gG~lv~~~~  234 (299)
                                 .|     .... +.....+... ....++||+|++|-.   +..+.+.+.+.|||||+++++--
T Consensus       207 -----------~N-----~v~~~~~~~~~~~~~-~~~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGI  264 (300)
T COG2264         207 -----------LN-----GVELLVQAKGFLLLE-VPENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGI  264 (300)
T ss_pred             -----------Hc-----CCchhhhcccccchh-hcccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEee
Confidence                       42     2222 2222222222 223368999999863   34556799999999999999853

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.47  E-value=1.9e-13  Score=103.74  Aligned_cols=99  Identities=26%  Similarity=0.352  Sum_probs=82.1

Q ss_pred             CCeEEEEcCCCcHHHHHHHHcC-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCCCCeeEEEe
Q psy7837         132 GSKVLDIGSGSGYLSALFAYMG-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDAAPYDVIYI  208 (299)
Q Consensus       132 ~~~vLDiG~G~G~~~~~la~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~  208 (299)
                      |.+|||+|||+|.++..+++.+ .+++++|+++..++.++.+++.+    ....+++++++|.....  ...++||+|++
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~----~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~   76 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRN----GLDDRVEVIVGDARDLPEPLPDGKFDLIVT   76 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHC----TTTTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHc----cCCceEEEEECchhhchhhccCceeEEEEE
Confidence            5689999999999999999998 88999999999999999999884    34578999999987532  34588999999


Q ss_pred             cchhh--------------hHHHHHHHhccCCcEEEEEec
Q psy7837         209 SQAIR--------------DIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       209 ~~~~~--------------~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      +.++.              .+.+++.++|+|||.+++..+
T Consensus        77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            99864              234688999999999999875

...

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.46  E-value=1.5e-12  Score=112.41  Aligned_cols=98  Identities=18%  Similarity=0.236  Sum_probs=82.0

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS  209 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  209 (299)
                      .++.+|||+|||+|.++..++..+.+++++|+|+.+++.++++..          ...++++|+.......++||+|+++
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~----------~~~~~~~d~~~~~~~~~~fD~V~s~  110 (251)
T PRK10258         41 RKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA----------ADHYLAGDIESLPLATATFDLAWSN  110 (251)
T ss_pred             cCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC----------CCCEEEcCcccCcCCCCcEEEEEEC
Confidence            456899999999999999999999999999999999999987632          2467889988755555789999999


Q ss_pred             chhhhH------HHHHHHhccCCcEEEEEecCCC
Q psy7837         210 QAIRDI------PWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       210 ~~~~~~------~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      .++++.      ..++.++|+|||.++++.....
T Consensus       111 ~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~  144 (251)
T PRK10258        111 LAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQG  144 (251)
T ss_pred             chhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence            887653      4689999999999999876543

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.46  E-value=1.4e-12  Score=113.98  Aligned_cols=105  Identities=30%  Similarity=0.375  Sum_probs=87.5

Q ss_pred             cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCc
Q psy7837          64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSG  143 (299)
Q Consensus        64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G  143 (299)
                      .+++|++|||+|||+|..+..+++..++.++++++|+++.+++.++++...                             
T Consensus        74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~-----------------------------  124 (272)
T PRK11873         74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARK-----------------------------  124 (272)
T ss_pred             cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHH-----------------------------
Confidence            478999999999999999998888888878899999999999988887765                             


Q ss_pred             HHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhh------hHHH
Q psy7837         144 YLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIR------DIPW  217 (299)
Q Consensus       144 ~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~------~~~~  217 (299)
                                                           ....+++++.+|+.......++||+|+++.+++      .+.+
T Consensus       125 -------------------------------------~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~~~~d~~~~l~  167 (272)
T PRK11873        125 -------------------------------------AGYTNVEFRLGEIEALPVADNSVDVIISNCVINLSPDKERVFK  167 (272)
T ss_pred             -------------------------------------cCCCCEEEEEcchhhCCCCCCceeEEEEcCcccCCCCHHHHHH
Confidence                                                 344688999999876544457899999988654      3557


Q ss_pred             HHHHhccCCcEEEEEec
Q psy7837         218 HIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       218 ~~~~~L~~gG~lv~~~~  234 (299)
                      ++.++|||||++++...
T Consensus       168 ~~~r~LkpGG~l~i~~~  184 (272)
T PRK11873        168 EAFRVLKPGGRFAISDV  184 (272)
T ss_pred             HHHHHcCCCcEEEEEEe
Confidence            99999999999999643

>KOG1270|consensus

Probab=99.45  E-value=2.2e-13  Score=113.77  Aligned_cols=103  Identities=24%  Similarity=0.407  Sum_probs=80.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCccc--CCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIA--LAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      .|++|||+|||.|.++..+++.|++|+|+|+++.+++.|++..... ..+.  ...++++...|+...-   +.||.|+|
T Consensus        89 ~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~d-P~~~~~~~y~l~~~~~~~E~~~---~~fDaVvc  164 (282)
T KOG1270|consen   89 LGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMD-PVLEGAIAYRLEYEDTDVEGLT---GKFDAVVC  164 (282)
T ss_pred             CCceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcC-chhccccceeeehhhcchhhcc---cccceeee
Confidence            3588999999999999999999999999999999999999984331 1000  1123566666655432   45999999


Q ss_pred             cchhhhHH------HHHHHhccCCcEEEEEecCCC
Q psy7837         209 SQAIRDIP------WHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       209 ~~~~~~~~------~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      ..+++|+.      +.+.++|||+|++++.+-+..
T Consensus       165 sevleHV~dp~~~l~~l~~~lkP~G~lfittinrt  199 (282)
T KOG1270|consen  165 SEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRT  199 (282)
T ss_pred             HHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence            99999873      478899999999999876643

>PRK04266 fibrillarin; Provisional

Probab=99.44  E-value=2.9e-12  Score=108.26  Aligned_cols=116  Identities=26%  Similarity=0.267  Sum_probs=87.8

Q ss_pred             CcchHHHHHHHH-hccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcc
Q psy7837          50 SPSDHCLVLELL-SGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGH  128 (299)
Q Consensus        50 ~p~~~~~~~~~l-~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~  128 (299)
                      .+.+...++..+ .-.+++|++|||+|||+|.++..+++.++ .|+|+++|+++.+++...+....              
T Consensus        54 r~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~--------------  118 (226)
T PRK04266         54 RSKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEE--------------  118 (226)
T ss_pred             ccchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhh--------------
Confidence            345556666644 22478999999999999999999999987 78999999999998877655443              


Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---CCCCCeeE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---PDAAPYDV  205 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~  205 (299)
                                                                            ..|+.++.+|+....   .-..+||+
T Consensus       119 ------------------------------------------------------~~nv~~i~~D~~~~~~~~~l~~~~D~  144 (226)
T PRK04266        119 ------------------------------------------------------RKNIIPILADARKPERYAHVVEKVDV  144 (226)
T ss_pred             ------------------------------------------------------cCCcEEEECCCCCcchhhhccccCCE
Confidence                                                                  147888888876421   11246999


Q ss_pred             EEecchhhh----HHHHHHHhccCCcEEEEEec
Q psy7837         206 IYISQAIRD----IPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       206 v~~~~~~~~----~~~~~~~~L~~gG~lv~~~~  234 (299)
                      |+++....+    +.+++.+.|||||.+++.+.
T Consensus       145 i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~  177 (226)
T PRK04266        145 IYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAIK  177 (226)
T ss_pred             EEECCCChhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            998765432    35789999999999999644

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.44  E-value=2e-12  Score=112.19  Aligned_cols=101  Identities=27%  Similarity=0.253  Sum_probs=83.1

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI  206 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  206 (299)
                      .+.++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++++...       ..++.++.+|+.....+.++||+|
T Consensus        49 ~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-------~~~i~~~~~D~~~~~~~~~~FD~V  121 (263)
T PTZ00098         49 ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-------KNKIEFEANDILKKDFPENTFDMI  121 (263)
T ss_pred             CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-------CCceEEEECCcccCCCCCCCeEEE
Confidence            5678899999999999999888764 77999999999999999987533       357999999988655555789999


Q ss_pred             Eecchhhh--------HHHHHHHhccCCcEEEEEecC
Q psy7837         207 YISQAIRD--------IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       207 ~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ++..++.+        +.+++.++|||||.+++....
T Consensus       122 ~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~  158 (263)
T PTZ00098        122 YSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC  158 (263)
T ss_pred             EEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            99765543        335889999999999998654

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.43  E-value=1.4e-12  Score=116.06  Aligned_cols=129  Identities=13%  Similarity=0.035  Sum_probs=103.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCeeEEEec
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYDVIYIS  209 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~  209 (299)
                      ++.+|||+|||+|.+++.+++.+.+|+++|.++.+++.++++++.+     ...+++++++|+..... ..+.||+|+++
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~-----~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d  247 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAEL-----GLTNVQFQALDSTQFATAQGEVPDLVLVN  247 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHc-----CCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence            5689999999999999999999999999999999999999999883     45789999999875332 22469999999


Q ss_pred             chhhhHHH---HHHHhccCCcEEEEEecCCCCcceeeeEEeecCCceEEEEecceecccccccc
Q psy7837         210 QAIRDIPW---HIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSL  270 (299)
Q Consensus       210 ~~~~~~~~---~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (299)
                      ++-..+.+   ++...++|++.+++++.+......+..+     .+++...+.++.++ |.+.-
T Consensus       248 PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-----~~y~~~~~~~~DmF-P~T~H  305 (315)
T PRK03522        248 PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-----PGYRIERVQLFDMF-PHTAH  305 (315)
T ss_pred             CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-----cCcEEEEEEEeccC-CCCCe
Confidence            88554333   3344467889999999887766555554     35888889899888 77654

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.43  E-value=1.5e-12  Score=114.47  Aligned_cols=97  Identities=22%  Similarity=0.211  Sum_probs=80.4

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS  209 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  209 (299)
                      .++.+|||+|||+|.++..+++.|.+|+++|+|+.+++.++++++.+     .. ++++...|+..... .++||+|++.
T Consensus       119 ~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~-----~l-~v~~~~~D~~~~~~-~~~fD~I~~~  191 (287)
T PRK12335        119 VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKE-----NL-NIRTGLYDINSASI-QEEYDFILST  191 (287)
T ss_pred             cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc-----CC-ceEEEEechhcccc-cCCccEEEEc
Confidence            34569999999999999999999999999999999999999988762     33 78888888875433 4689999998


Q ss_pred             chhhh--------HHHHHHHhccCCcEEEEEe
Q psy7837         210 QAIRD--------IPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       210 ~~~~~--------~~~~~~~~L~~gG~lv~~~  233 (299)
                      .++++        +.+++.++|+|||++++..
T Consensus       192 ~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~  223 (287)
T PRK12335        192 VVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC  223 (287)
T ss_pred             chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            87643        3468899999999977654

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.43  E-value=1.2e-12  Score=121.81  Aligned_cols=141  Identities=17%  Similarity=0.138  Sum_probs=107.7

Q ss_pred             HHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--
Q psy7837         120 IKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--  197 (299)
Q Consensus       120 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--  197 (299)
                      .+.+.......++.+|||+|||+|.+++.+++.+..|+++|+|+.+++.|++|++.     ....+++++.+|+....  
T Consensus       286 ~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~-----~~~~~v~~~~~d~~~~l~~  360 (443)
T PRK13168        286 VARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARR-----NGLDNVTFYHANLEEDFTD  360 (443)
T ss_pred             HHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHH-----cCCCceEEEEeChHHhhhh
Confidence            33333334456788999999999999999999998999999999999999999987     35568999999987532  


Q ss_pred             --CCCCCeeEEEecchhhhH---HHHHHHhccCCcEEEEEecCCCCcceeeeEEeecCCceEEEEecceecccccccc
Q psy7837         198 --PDAAPYDVIYISQAIRDI---PWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSL  270 (299)
Q Consensus       198 --~~~~~fD~v~~~~~~~~~---~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (299)
                        ...++||+|+++++....   .+.+. .+++++++++++.+......+..+   .+.+++...+.++.++ |.+.-
T Consensus       361 ~~~~~~~fD~Vi~dPPr~g~~~~~~~l~-~~~~~~ivyvSCnp~tlaRDl~~L---~~~gY~l~~i~~~DmF-P~T~H  433 (443)
T PRK13168        361 QPWALGGFDKVLLDPPRAGAAEVMQALA-KLGPKRIVYVSCNPATLARDAGVL---VEAGYRLKRAGMLDMF-PHTGH  433 (443)
T ss_pred             hhhhcCCCCEEEECcCCcChHHHHHHHH-hcCCCeEEEEEeChHHhhccHHHH---hhCCcEEEEEEEeccC-CCCCc
Confidence              123579999999886533   33333 368999999999876544444444   3456999999999999 77654

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.43  E-value=3e-12  Score=114.75  Aligned_cols=112  Identities=19%  Similarity=0.139  Sum_probs=92.3

Q ss_pred             HHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCC
Q psy7837         121 KRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDA  200 (299)
Q Consensus       121 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  200 (299)
                      ..+..++...++.+|||+|||+|.++..++..+..++++|+++.+++.++.|++.     .+..++.+..+|+.......
T Consensus       172 ~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~-----~g~~~i~~~~~D~~~l~~~~  246 (329)
T TIGR01177       172 RAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEH-----YGIEDFFVKRGDATKLPLSS  246 (329)
T ss_pred             HHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHH-----hCCCCCeEEecchhcCCccc
Confidence            3344455678899999999999999999988899999999999999999999987     34455889999998755445


Q ss_pred             CCeeEEEecchh---------------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         201 APYDVIYISQAI---------------RDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       201 ~~fD~v~~~~~~---------------~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      ++||.|++++++               ..+.+++.++|+|||++++..++..
T Consensus       247 ~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~  298 (329)
T TIGR01177       247 ESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI  298 (329)
T ss_pred             CCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence            789999998653               2344678999999999999987653

This family is found exclusively in the Archaea.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.42  E-value=3.5e-12  Score=104.16  Aligned_cols=102  Identities=21%  Similarity=0.152  Sum_probs=78.5

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      .....++.++||+|||.|+.++.++++|..|+++|.|+..++.+++.++.     . ...++....|......+ ..||+
T Consensus        25 a~~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~-----~-~l~i~~~~~Dl~~~~~~-~~yD~   97 (192)
T PF03848_consen   25 AVPLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEE-----E-GLDIRTRVADLNDFDFP-EEYDF   97 (192)
T ss_dssp             HCTTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHH-----T-T-TEEEEE-BGCCBS-T-TTEEE
T ss_pred             HHhhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhh-----c-CceeEEEEecchhcccc-CCcCE
Confidence            34556788999999999999999999999999999999999999887766     2 23488999998764443 67999


Q ss_pred             EEecchhh--------hHHHHHHHhccCCcEEEEEec
Q psy7837         206 IYISQAIR--------DIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       206 v~~~~~~~--------~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      |++..++.        .+.+.+...++|||++++.+.
T Consensus        98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~  134 (192)
T PF03848_consen   98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF  134 (192)
T ss_dssp             EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence            99866553        344678889999999888543

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.41  E-value=2.4e-12  Score=105.36  Aligned_cols=100  Identities=21%  Similarity=0.289  Sum_probs=82.7

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS  209 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  209 (299)
                      .++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++++.+     . .+++++.+|......  ++||+|+++
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~-~~~~~~~~d~~~~~~--~~fD~Vi~n   89 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLN-----N-VGLDVVMTDLFKGVR--GKFDVILFN   89 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHc-----C-CceEEEEcccccccC--CcccEEEEC
Confidence            45678999999999999999999889999999999999999998773     2 368889999866432  479999998


Q ss_pred             chhh---------------------------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837         210 QAIR---------------------------DIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       210 ~~~~---------------------------~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      .++.                           .+.+++.++|+|||.+++......
T Consensus        90 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~  144 (179)
T TIGR00537        90 PPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN  144 (179)
T ss_pred             CCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence            7642                           235678899999999999876554

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.41  E-value=2.9e-12  Score=110.30  Aligned_cols=112  Identities=16%  Similarity=0.234  Sum_probs=84.7

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCC
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGS  133 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~-~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~  133 (299)
                      ..+...+...+.++.+|||+|||+|..+..+++.+ .+..+++++|+++.|++.+++++...                  
T Consensus        44 ~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~------------------  105 (247)
T PRK15451         44 SMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY------------------  105 (247)
T ss_pred             HHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc------------------
Confidence            33333334446788999999999999998888764 34567888888888888888777651                  


Q ss_pred             eEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhh
Q psy7837         134 KVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIR  213 (299)
Q Consensus       134 ~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~  213 (299)
                                                                     ....+++++++|+.....  ..+|+|+++.+++
T Consensus       106 -----------------------------------------------~~~~~v~~~~~d~~~~~~--~~~D~vv~~~~l~  136 (247)
T PRK15451        106 -----------------------------------------------KAPTPVDVIEGDIRDIAI--ENASMVVLNFTLQ  136 (247)
T ss_pred             -----------------------------------------------CCCCCeEEEeCChhhCCC--CCCCEEehhhHHH
Confidence                                                           234589999999876443  3489999988765


Q ss_pred             h--------HHHHHHHhccCCcEEEEEe
Q psy7837         214 D--------IPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       214 ~--------~~~~~~~~L~~gG~lv~~~  233 (299)
                      +        +.+++.+.|+|||.+++..
T Consensus       137 ~l~~~~~~~~l~~i~~~LkpGG~l~l~e  164 (247)
T PRK15451        137 FLEPSERQALLDKIYQGLNPGGALVLSE  164 (247)
T ss_pred             hCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            4        3468999999999999975

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.41  E-value=1.5e-12  Score=108.55  Aligned_cols=102  Identities=23%  Similarity=0.264  Sum_probs=83.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCC-CCCC--CCCCCeeE
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADG-RRGY--PDAAPYDV  205 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~--~~~~~fD~  205 (299)
                      ++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.++++++.     ....++.++++|+ ....  ...++||.
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~-----~~~~~v~~~~~d~~~~l~~~~~~~~~D~  114 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEE-----EGLTNLRLLCGDAVEVLLDMFPDGSLDR  114 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHH-----cCCCCEEEEecCHHHHHHHHcCccccce
Confidence            5789999999999999999876  46799999999999999999887     3447899999998 4322  33467999


Q ss_pred             EEecchh--------------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         206 IYISQAI--------------RDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       206 v~~~~~~--------------~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      |+++.+.              ..+.+++.++|+|||.+++......
T Consensus       115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~  160 (202)
T PRK00121        115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG  160 (202)
T ss_pred             EEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH
Confidence            9987542              2356789999999999999876654

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.41  E-value=2.6e-12  Score=111.35  Aligned_cols=97  Identities=21%  Similarity=0.264  Sum_probs=80.8

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      ...++.+|||+|||+|.++..+++.  +.+|+++|+|+.+++.+++++          .++.++.+|+.... ...+||+
T Consensus        28 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----------~~~~~~~~d~~~~~-~~~~fD~   96 (258)
T PRK01683         28 PLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----------PDCQFVEADIASWQ-PPQALDL   96 (258)
T ss_pred             CCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC----------CCCeEEECchhccC-CCCCccE
Confidence            4567889999999999999999876  578999999999999998763          36788999987543 3368999


Q ss_pred             EEecchhhhH------HHHHHHhccCCcEEEEEecC
Q psy7837         206 IYISQAIRDI------PWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       206 v~~~~~~~~~------~~~~~~~L~~gG~lv~~~~~  235 (299)
                      |+++.+++++      .+++.++|+|||.+++..+.
T Consensus        97 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~  132 (258)
T PRK01683         97 IFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPD  132 (258)
T ss_pred             EEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence            9999998654      35899999999999997643

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.40  E-value=2.9e-12  Score=109.15  Aligned_cols=117  Identities=20%  Similarity=0.327  Sum_probs=93.7

Q ss_pred             cchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccC
Q psy7837          51 PSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLV  130 (299)
Q Consensus        51 p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~  130 (299)
                      +.....++..+.. ..++.+|||+|||+|+.+.+++..++.+|+++++|+++...+.|++++...               
T Consensus        53 ~~~~g~~L~~l~~-~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~---------------  116 (234)
T PLN02781         53 PVDEGLFLSMLVK-IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA---------------  116 (234)
T ss_pred             CHHHHHHHHHHHH-HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc---------------
Confidence            3344666666654 667889999999999999999999888899999999999999999998872               


Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC------CCCCee
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP------DAAPYD  204 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------~~~~fD  204 (299)
                                                                        +...+++++.+|+.....      ..++||
T Consensus       117 --------------------------------------------------gl~~~i~~~~gda~~~L~~l~~~~~~~~fD  146 (234)
T PLN02781        117 --------------------------------------------------GVDHKINFIQSDALSALDQLLNNDPKPEFD  146 (234)
T ss_pred             --------------------------------------------------CCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence                                                              344689999999875321      136799


Q ss_pred             EEEecch---hhhHHHHHHHhccCCcEEEEEe
Q psy7837         205 VIYISQA---IRDIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       205 ~v~~~~~---~~~~~~~~~~~L~~gG~lv~~~  233 (299)
                      +|+++..   .....+.+.++|+|||.+++..
T Consensus       147 ~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn  178 (234)
T PLN02781        147 FAFVDADKPNYVHFHEQLLKLVKVGGIIAFDN  178 (234)
T ss_pred             EEEECCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence            9999964   4456678899999999988754

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.40  E-value=1.3e-12  Score=110.14  Aligned_cols=106  Identities=26%  Similarity=0.362  Sum_probs=88.9

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHc-C-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC--CCCCee
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYM-G-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP--DAAPYD  204 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~-~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD  204 (299)
                      .....+|||+|||+|..++.++++ . ++++++|+++.+.+.|+++++.+    ....++++++.|+.+...  ...+||
T Consensus        42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln----~l~~ri~v~~~Di~~~~~~~~~~~fD  117 (248)
T COG4123          42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN----PLEERIQVIEADIKEFLKALVFASFD  117 (248)
T ss_pred             cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhC----cchhceeEehhhHHHhhhcccccccC
Confidence            344889999999999999999988 4 78999999999999999999986    678999999999986432  235799


Q ss_pred             EEEecchhh------------------------hHHHHHHHhccCCcEEEEEecCCCC
Q psy7837         205 VIYISQAIR------------------------DIPWHIVDQLKLGGRMLFIKGHEDD  238 (299)
Q Consensus       205 ~v~~~~~~~------------------------~~~~~~~~~L~~gG~lv~~~~~~~~  238 (299)
                      +|+||+++.                        .+.+...++||+||.+.+..++..-
T Consensus       118 ~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl  175 (248)
T COG4123         118 LIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERL  175 (248)
T ss_pred             EEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHH
Confidence            999999852                        2334678899999999999887653

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.40  E-value=8.8e-12  Score=108.87  Aligned_cols=96  Identities=22%  Similarity=0.250  Sum_probs=78.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc-----CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM-----GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~-----~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      ++.+|||+|||+|.++..+++.     +..++++|+|+.+++.|+++.          .++.+.++|....+...++||+
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----------~~~~~~~~d~~~lp~~~~sfD~  154 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----------PQVTFCVASSHRLPFADQSLDA  154 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----------CCCeEEEeecccCCCcCCceeE
Confidence            4578999999999999988765     247999999999999987652          4688999998876556678999


Q ss_pred             EEecchhhhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         206 IYISQAIRDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       206 v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      |++... ....+++.++|||||++++..+...
T Consensus       155 I~~~~~-~~~~~e~~rvLkpgG~li~~~p~~~  185 (272)
T PRK11088        155 IIRIYA-PCKAEELARVVKPGGIVITVTPGPR  185 (272)
T ss_pred             EEEecC-CCCHHHHHhhccCCCEEEEEeCCCc
Confidence            998665 3456899999999999999987654

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.40  E-value=1.2e-11  Score=108.86  Aligned_cols=112  Identities=22%  Similarity=0.249  Sum_probs=80.4

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCe
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSK  134 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  134 (299)
                      ..+++.+....++|.+|||+|||+|.++..+++. + .++++++|+++.+++.+++++...                   
T Consensus       147 ~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n-------------------  205 (288)
T TIGR00406       147 SLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELN-------------------  205 (288)
T ss_pred             HHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHc-------------------
Confidence            4455666555678999999999999999877753 3 247888888888888777776551                   


Q ss_pred             EEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhh-
Q psy7837         135 VLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIR-  213 (299)
Q Consensus       135 vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~-  213 (299)
                                                                    ....++.+...+....  ..++||+|+++.... 
T Consensus       206 ----------------------------------------------~~~~~~~~~~~~~~~~--~~~~fDlVvan~~~~~  237 (288)
T TIGR00406       206 ----------------------------------------------QVSDRLQVKLIYLEQP--IEGKADVIVANILAEV  237 (288)
T ss_pred             ----------------------------------------------CCCcceEEEecccccc--cCCCceEEEEecCHHH
Confidence                                                          2233456666553222  236799999987654 


Q ss_pred             --hHHHHHHHhccCCcEEEEEecC
Q psy7837         214 --DIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       214 --~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                        .+.+++.++|+|||.++++...
T Consensus       238 l~~ll~~~~~~LkpgG~li~sgi~  261 (288)
T TIGR00406       238 IKELYPQFSRLVKPGGWLILSGIL  261 (288)
T ss_pred             HHHHHHHHHHHcCCCcEEEEEeCc
Confidence              4456889999999999997654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK14967 putative methyltransferase; Provisional

Probab=99.39  E-value=9e-12  Score=105.61  Aligned_cols=101  Identities=25%  Similarity=0.291  Sum_probs=81.8

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      +.++.+|||+|||+|.++..+++.+. +++++|+++.+++.++++++.+     . .++.++.+|+.... ..++||+|+
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~-----~-~~~~~~~~d~~~~~-~~~~fD~Vi  106 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLA-----G-VDVDVRRGDWARAV-EFRPFDVVV  106 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh-----C-CeeEEEECchhhhc-cCCCeeEEE
Confidence            45678999999999999999998876 8999999999999999998772     2 26888899987643 346899999


Q ss_pred             ecchh---------------------------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         208 ISQAI---------------------------RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       208 ~~~~~---------------------------~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ++.+.                           ..+.+++.++|++||++++.....
T Consensus       107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~  162 (223)
T PRK14967        107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL  162 (223)
T ss_pred             ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            98642                           224457889999999999876654

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.38  E-value=4.8e-12  Score=112.73  Aligned_cols=99  Identities=18%  Similarity=0.189  Sum_probs=79.0

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      .++++|||+|||+|+++..++..+. .|+|+|.|+.++..++......    ....++.++.+|+..... .++||+|++
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~----~~~~~i~~~~~d~e~lp~-~~~FD~V~s  195 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLL----GNDQRAHLLPLGIEQLPA-LKAFDTVFS  195 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhc----CCCCCeEEEeCCHHHCCC-cCCcCEEEE
Confidence            4678999999999999999999876 5999999999987655433221    123579999999886544 578999999


Q ss_pred             cchhhhH------HHHHHHhccCCcEEEEEe
Q psy7837         209 SQAIRDI------PWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       209 ~~~~~~~------~~~~~~~L~~gG~lv~~~  233 (299)
                      ..++++.      .+++.+.|+|||.+++..
T Consensus       196 ~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        196 MGVLYHRRSPLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             CChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            8887553      468999999999999874

>KOG2915|consensus

Probab=99.38  E-value=7.9e-12  Score=104.73  Aligned_cols=129  Identities=23%  Similarity=0.305  Sum_probs=107.4

Q ss_pred             ccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHH
Q psy7837          39 PHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET  118 (299)
Q Consensus        39 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~  118 (299)
                      .+.++++.++.++...+.++..|.  ++||.+|+|.|+|+|.++.++++.+++.||++++|+.....+.|++.++..   
T Consensus        79 Tl~LphRTQI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h---  153 (314)
T KOG2915|consen   79 TLALPHRTQILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH---  153 (314)
T ss_pred             hhhccCcceEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh---
Confidence            456778889999999999999998  999999999999999999999999999999999999999999999988873   


Q ss_pred             HHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC-CC
Q psy7837         119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR-GY  197 (299)
Q Consensus       119 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~  197 (299)
                                                                                    +..+++++.+-|+.. .+
T Consensus       154 --------------------------------------------------------------gi~~~vt~~hrDVc~~GF  171 (314)
T KOG2915|consen  154 --------------------------------------------------------------GIGDNVTVTHRDVCGSGF  171 (314)
T ss_pred             --------------------------------------------------------------CCCcceEEEEeecccCCc
Confidence                                                                          567899999999884 23


Q ss_pred             C-CCCCeeEEEecchhhhHH-HHHHHhccCCcEEEEEec
Q psy7837         198 P-DAAPYDVIYISQAIRDIP-WHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       198 ~-~~~~fD~v~~~~~~~~~~-~~~~~~L~~gG~lv~~~~  234 (299)
                      . .+..+|.|+.+.+..|.. ..+...||.+|.-++++.
T Consensus       172 ~~ks~~aDaVFLDlPaPw~AiPha~~~lk~~g~r~csFS  210 (314)
T KOG2915|consen  172 LIKSLKADAVFLDLPAPWEAIPHAAKILKDEGGRLCSFS  210 (314)
T ss_pred             cccccccceEEEcCCChhhhhhhhHHHhhhcCceEEecc
Confidence            2 257899999998876633 566668888774444443

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.36  E-value=1.8e-12  Score=103.78  Aligned_cols=100  Identities=24%  Similarity=0.368  Sum_probs=77.9

Q ss_pred             Hhhhcc-cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCC
Q psy7837         123 INFYGH-LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAA  201 (299)
Q Consensus       123 ~~~~~~-~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  201 (299)
                      +..+.. ..++.+|||+|||+|.++..+++.+.+++++|+++.+++.      .         +......+........+
T Consensus        13 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~---------~~~~~~~~~~~~~~~~~   77 (161)
T PF13489_consen   13 LERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------R---------NVVFDNFDAQDPPFPDG   77 (161)
T ss_dssp             HHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------T---------TSEEEEEECHTHHCHSS
T ss_pred             HHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------h---------hhhhhhhhhhhhhcccc
Confidence            333333 5778999999999999999999999999999999999887      1         22333333223233447


Q ss_pred             CeeEEEecchhhhHH------HHHHHhccCCcEEEEEecCCC
Q psy7837         202 PYDVIYISQAIRDIP------WHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       202 ~fD~v~~~~~~~~~~------~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      +||+|++..++++++      +++.++|||||.+++..+...
T Consensus        78 ~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~  119 (161)
T PF13489_consen   78 SFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRD  119 (161)
T ss_dssp             SEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred             chhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence            899999999997764      589999999999999998753

...

>TIGR00740 methyltransferase, putative

Probab=99.36  E-value=6.7e-12  Score=107.57  Aligned_cols=99  Identities=16%  Similarity=0.206  Sum_probs=81.5

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc----CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM----GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~----~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      .++.+|||+|||+|..+..+++.    +.+++++|+|+.+++.+++++...    ....+++++++|+.....  ..+|+
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~----~~~~~v~~~~~d~~~~~~--~~~d~  125 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY----HSEIPVEILCNDIRHVEI--KNASM  125 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc----CCCCCeEEEECChhhCCC--CCCCE
Confidence            46789999999999999988874    678999999999999999998762    234578999999986543  34899


Q ss_pred             EEecchhhhH--------HHHHHHhccCCcEEEEEec
Q psy7837         206 IYISQAIRDI--------PWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       206 v~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~  234 (299)
                      |++..+++++        .+++.++|+|||.+++...
T Consensus       126 v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~  162 (239)
T TIGR00740       126 VILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK  162 (239)
T ss_pred             EeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence            9988876553        3589999999999999864

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR00452 methyltransferase, putative

Probab=99.36  E-value=7.7e-12  Score=110.44  Aligned_cols=101  Identities=15%  Similarity=0.109  Sum_probs=78.2

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI  206 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  206 (299)
                      ...++++|||+|||+|+++..++..|. .|+|+|.|+.++..++..-+..    ....++.+..+++.+.... .+||+|
T Consensus       118 ~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~----~~~~~v~~~~~~ie~lp~~-~~FD~V  192 (314)
T TIGR00452       118 SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLL----DNDKRAILEPLGIEQLHEL-YAFDTV  192 (314)
T ss_pred             CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHh----ccCCCeEEEECCHHHCCCC-CCcCEE
Confidence            346689999999999999999988886 5999999999987654322210    1235778888887664333 579999


Q ss_pred             EecchhhhH------HHHHHHhccCCcEEEEEe
Q psy7837         207 YISQAIRDI------PWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       207 ~~~~~~~~~------~~~~~~~L~~gG~lv~~~  233 (299)
                      ++..++.++      .++++++|+|||.|++..
T Consensus       193 ~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet  225 (314)
T TIGR00452       193 FSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET  225 (314)
T ss_pred             EEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence            999988654      468999999999999874

Known examples to date are restricted to the proteobacteria.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.36  E-value=2.9e-12  Score=116.56  Aligned_cols=130  Identities=12%  Similarity=0.041  Sum_probs=103.0

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCeeEEEe
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYDVIYI  208 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~  208 (299)
                      .++.+|||+|||+|.+++.++..+.+|+++|+++.+++.+++|++.+     ...+++++.+|+..... ...+||+|++
T Consensus       232 ~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~-----~~~~~~~~~~d~~~~~~~~~~~~D~vi~  306 (374)
T TIGR02085       232 IPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQML-----GLDNLSFAALDSAKFATAQMSAPELVLV  306 (374)
T ss_pred             cCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHc-----CCCcEEEEECCHHHHHHhcCCCCCEEEE
Confidence            45679999999999999999999989999999999999999999883     45689999999865332 1245999999


Q ss_pred             cchhhhHHH---HHHHhccCCcEEEEEecCCCCcceeeeEEeecCCceEEEEecceecccccccc
Q psy7837         209 SQAIRDIPW---HIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSL  270 (299)
Q Consensus       209 ~~~~~~~~~---~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (299)
                      +++...+.+   +....++|++.+++++.+......+..+     .+++.+.+.++.++ |.+.-
T Consensus       307 DPPr~G~~~~~l~~l~~~~p~~ivyvsc~p~TlaRDl~~L-----~gy~l~~~~~~DmF-PqT~H  365 (374)
T TIGR02085       307 NPPRRGIGKELCDYLSQMAPKFILYSSCNAQTMAKDIAEL-----SGYQIERVQLFDMF-PHTSH  365 (374)
T ss_pred             CCCCCCCcHHHHHHHHhcCCCeEEEEEeCHHHHHHHHHHh-----cCceEEEEEEeccC-CCCCc
Confidence            998754333   2234578999999999887655555555     35888899999999 76654

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.36  E-value=2.2e-11  Score=106.78  Aligned_cols=101  Identities=26%  Similarity=0.348  Sum_probs=81.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      ++.+|||+|||+|.++..+++.  +.+|+++|+|+.+++.+++|++.+    +...++.++.+|+..... ..+||+|++
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~----~~~~~i~~~~~D~~~~~~-~~~fD~Iv~  195 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERH----GLEDRVTLIQSDLFAALP-GRKYDLIVS  195 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc----CCCCcEEEEECchhhccC-CCCccEEEE
Confidence            4579999999999999999986  568999999999999999999874    233579999999875443 357999999


Q ss_pred             cchh-------------------------------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         209 SQAI-------------------------------RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       209 ~~~~-------------------------------~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +++.                               ..+...+.+.|+|||++++..+..
T Consensus       196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~  254 (284)
T TIGR03533       196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNS  254 (284)
T ss_pred             CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence            8653                               122346778999999999988753

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PTZ00146 fibrillarin; Provisional

Probab=99.36  E-value=1.4e-11  Score=106.64  Aligned_cols=116  Identities=23%  Similarity=0.247  Sum_probs=85.9

Q ss_pred             chHHHHHHHHhc-cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccC
Q psy7837          52 SDHCLVLELLSG-HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLV  130 (299)
Q Consensus        52 ~~~~~~~~~l~~-~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~  130 (299)
                      .+.+.++.-+.. .+++|++|||+|||+|+++..+++.++++|.|+++|+++.+.+...+....                
T Consensus       116 Klaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~----------------  179 (293)
T PTZ00146        116 KLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK----------------  179 (293)
T ss_pred             HHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh----------------
Confidence            344455444443 379999999999999999999999999999999999998766544443322                


Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---CCCCCeeEEE
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---PDAAPYDVIY  207 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~v~  207 (299)
                                                                          ..|+.++.+|+....   ....++|+|+
T Consensus       180 ----------------------------------------------------r~NI~~I~~Da~~p~~y~~~~~~vDvV~  207 (293)
T PTZ00146        180 ----------------------------------------------------RPNIVPIIEDARYPQKYRMLVPMVDVIF  207 (293)
T ss_pred             ----------------------------------------------------cCCCEEEECCccChhhhhcccCCCCEEE
Confidence                                                                247888899976421   1124799999


Q ss_pred             ecchhhh----HHHHHHHhccCCcEEEEEecC
Q psy7837         208 ISQAIRD----IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       208 ~~~~~~~----~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ++....+    +..++.+.|||||.+++.+..
T Consensus       208 ~Dva~pdq~~il~~na~r~LKpGG~~vI~ika  239 (293)
T PTZ00146        208 ADVAQPDQARIVALNAQYFLKNGGHFIISIKA  239 (293)
T ss_pred             EeCCCcchHHHHHHHHHHhccCCCEEEEEEec
Confidence            9886433    335788899999999996543

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.36  E-value=5.1e-12  Score=104.76  Aligned_cols=102  Identities=18%  Similarity=0.232  Sum_probs=84.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC---CCCCCCeeE
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG---YPDAAPYDV  205 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~fD~  205 (299)
                      ...++||||||+|.++..+++.  ...++++|+++.+++.+++++..     ....|+.++++|+...   ....+++|.
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~-----~~l~ni~~i~~d~~~~~~~~~~~~~~d~   90 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANK-----LGLKNLHVLCGDANELLDKFFPDGSLSK   90 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH-----hCCCCEEEEccCHHHHHHhhCCCCceeE
Confidence            4679999999999999999887  46799999999999999999877     4556999999998742   233458999


Q ss_pred             EEecchhh--------------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837         206 IYISQAIR--------------DIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       206 v~~~~~~~--------------~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      |+++.+..              .+.+++.++|||||.+++.+....
T Consensus        91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~  136 (194)
T TIGR00091        91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP  136 (194)
T ss_pred             EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence            99986532              356789999999999999886654

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.36  E-value=1.9e-12  Score=95.69  Aligned_cols=87  Identities=23%  Similarity=0.341  Sum_probs=68.6

Q ss_pred             EEEEcCCCcHHHHHHHHcC-----CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837         135 VLDIGSGSGYLSALFAYMG-----AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS  209 (299)
Q Consensus       135 vLDiG~G~G~~~~~la~~~-----~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  209 (299)
                      |||+|||+|..+..+.+..     .+++++|+|+++++.++++...     ... +++++++|+.......++||+|++.
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~-----~~~-~~~~~~~D~~~l~~~~~~~D~v~~~   74 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE-----DGP-KVRFVQADARDLPFSDGKFDLVVCS   74 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH-----TTT-TSEEEESCTTCHHHHSSSEEEEEE-
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh-----cCC-ceEEEECCHhHCcccCCCeeEEEEc
Confidence            7999999999999998773     7899999999999999999876     223 8999999998754455789999994


Q ss_pred             ch-hhh--------HHHHHHHhccCCc
Q psy7837         210 QA-IRD--------IPWHIVDQLKLGG  227 (299)
Q Consensus       210 ~~-~~~--------~~~~~~~~L~~gG  227 (299)
                      .. +++        +.+++.++|+|||
T Consensus        75 ~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   75 GLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             CCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            43 543        3468899999998

>PRK08317 hypothetical protein; Provisional

Probab=99.36  E-value=1.9e-11  Score=104.26  Aligned_cols=111  Identities=23%  Similarity=0.293  Sum_probs=88.7

Q ss_pred             HHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC
Q psy7837         119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR  195 (299)
Q Consensus       119 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  195 (299)
                      +.+.+.....+.++.+|||+|||+|.++..+++.   +.+++++|+++.+++.++++...      ...++.+..+|...
T Consensus         7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~------~~~~~~~~~~d~~~   80 (241)
T PRK08317          7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG------LGPNVEFVRGDADG   80 (241)
T ss_pred             HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC------CCCceEEEeccccc
Confidence            3344445566788899999999999999999876   36899999999999999987332      45689999999876


Q ss_pred             CCCCCCCeeEEEecchhhh------HHHHHHHhccCCcEEEEEecC
Q psy7837         196 GYPDAAPYDVIYISQAIRD------IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       196 ~~~~~~~fD~v~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      .....++||+|++..++++      +.+++.++|+|||.+++....
T Consensus        81 ~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  126 (241)
T PRK08317         81 LPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTD  126 (241)
T ss_pred             CCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence            4444578999999887754      457899999999999987653

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.35  E-value=1.2e-11  Score=103.62  Aligned_cols=105  Identities=22%  Similarity=0.213  Sum_probs=77.5

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCC-------cccCCCCeEEEEcCCCCCCCC-CC
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAP-------AIALAENFEFVCADGRRGYPD-AA  201 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~-------~~~~~~~v~~~~~d~~~~~~~-~~  201 (299)
                      .++.+|||+|||.|..+..++++|.+|+++|+|+.+++.+.+.......       +.....+++++++|+...... .+
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~  112 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG  112 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence            3578999999999999999999999999999999999986443211000       000134789999999864432 35


Q ss_pred             CeeEEEecchhhhH--------HHHHHHhccCCcEEEEEec
Q psy7837         202 PYDVIYISQAIRDI--------PWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       202 ~fD~v~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~  234 (299)
                      .||.|+-...+.++        .+.+.++|+|||.+++.+.
T Consensus       113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~  153 (213)
T TIGR03840       113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL  153 (213)
T ss_pred             CcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence            69999877766444        3578999999998666543

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.35  E-value=1.6e-11  Score=106.58  Aligned_cols=109  Identities=17%  Similarity=0.195  Sum_probs=87.4

Q ss_pred             cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCc
Q psy7837          64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSG  143 (299)
Q Consensus        64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G  143 (299)
                      .+++|++|||+|||+|..+..+++.++..|+++++|+++.+++.+++++..                             
T Consensus        68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~-----------------------------  118 (264)
T TIGR00446        68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINR-----------------------------  118 (264)
T ss_pred             CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH-----------------------------
Confidence            378999999999999999999999988778999999999999998888877                             


Q ss_pred             HHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhh----------
Q psy7837         144 YLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIR----------  213 (299)
Q Consensus       144 ~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~----------  213 (299)
                                                           .+..++.++..|+.......+.||.|+++++..          
T Consensus       119 -------------------------------------~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~  161 (264)
T TIGR00446       119 -------------------------------------CGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRKDPS  161 (264)
T ss_pred             -------------------------------------cCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCCCcccccChh
Confidence                                                 344578888888765333335699999987532          


Q ss_pred             ------------------hHHHHHHHhccCCcEEEEEecCCCC
Q psy7837         214 ------------------DIPWHIVDQLKLGGRMLFIKGHEDD  238 (299)
Q Consensus       214 ------------------~~~~~~~~~L~~gG~lv~~~~~~~~  238 (299)
                                        .+.+.+.++|||||+|+.++-+...
T Consensus       162 ~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~  204 (264)
T TIGR00446       162 RKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP  204 (264)
T ss_pred             hhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence                              2445778899999999998765443

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.35  E-value=1.8e-11  Score=110.53  Aligned_cols=101  Identities=16%  Similarity=0.325  Sum_probs=81.5

Q ss_pred             CCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837         132 GSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS  209 (299)
Q Consensus       132 ~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  209 (299)
                      +.+|||+|||+|.++..+++.  +.+|+++|.|+.+++.+++|++.+..  ....+++++..|...... ..+||+|+++
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~--~~~~~v~~~~~D~l~~~~-~~~fDlIlsN  305 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMP--EALDRCEFMINNALSGVE-PFRFNAVLCN  305 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCc--ccCceEEEEEccccccCC-CCCEEEEEEC
Confidence            469999999999999999887  46899999999999999999987421  012478999998875443 3579999999


Q ss_pred             chhh-----------hHHHHHHHhccCCcEEEEEecC
Q psy7837         210 QAIR-----------DIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       210 ~~~~-----------~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ++++           .+...+.+.|+|||.+++....
T Consensus       306 PPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr  342 (378)
T PRK15001        306 PPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR  342 (378)
T ss_pred             cCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEec
Confidence            8864           2345788999999999999643

>PRK14968 putative methyltransferase; Provisional

Probab=99.34  E-value=1.4e-11  Score=101.36  Aligned_cols=101  Identities=25%  Similarity=0.329  Sum_probs=82.5

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCC--eEEEEcCCCCCCCCCCCeeEEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAEN--FEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~--v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      .++.+|||+|||+|.++..+++.+.+++++|+++.+++.+++++..+     ...+  +.++.+|....... .+||+|+
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~-----~~~~~~~~~~~~d~~~~~~~-~~~d~vi   95 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLN-----NIRNNGVEVIRSDLFEPFRG-DKFDVIL   95 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHc-----CCCCcceEEEeccccccccc-cCceEEE
Confidence            46789999999999999999999999999999999999999998763     3233  88999998765443 4799999


Q ss_pred             ecchhh---------------------------hHHHHHHHhccCCcEEEEEecCC
Q psy7837         208 ISQAIR---------------------------DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       208 ~~~~~~---------------------------~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ++.++.                           .+.+++.++|+|||.+++..+..
T Consensus        96 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~  151 (188)
T PRK14968         96 FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL  151 (188)
T ss_pred             ECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc
Confidence            876532                           24568889999999998887654

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.34  E-value=3.2e-11  Score=101.96  Aligned_cols=96  Identities=25%  Similarity=0.293  Sum_probs=76.3

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      ..++.+|||+|||+|.++..++..+.+++++|+++.++..+++++...    ....++.+.++|+....   ++||+|++
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~----~~~~~i~~~~~d~~~~~---~~fD~ii~  125 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGR----DVAGNVEFEVNDLLSLC---GEFDIVVC  125 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----CCCCceEEEECChhhCC---CCcCEEEE
Confidence            567899999999999999999999999999999999999999998762    22358999999987643   67999998


Q ss_pred             cchhhhH--------HHHHHHhccCCcEEEE
Q psy7837         209 SQAIRDI--------PWHIVDQLKLGGRMLF  231 (299)
Q Consensus       209 ~~~~~~~--------~~~~~~~L~~gG~lv~  231 (299)
                      ..++.++        ..++.+++++++.+.+
T Consensus       126 ~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~  156 (219)
T TIGR02021       126 MDVLIHYPASDMAKALGHLASLTKERVIFTF  156 (219)
T ss_pred             hhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence            8776443        2456667775544443

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PLN02476 O-methyltransferase

Probab=99.34  E-value=1.5e-11  Score=106.19  Aligned_cols=117  Identities=16%  Similarity=0.290  Sum_probs=94.4

Q ss_pred             chHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCC
Q psy7837          52 SDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVY  131 (299)
Q Consensus        52 ~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~  131 (299)
                      .....++..+.. ..++.+|||+||++|+.+.+++..++++|+++++|.++...+.|++++.+.                
T Consensus       104 ~~~g~lL~~L~~-~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a----------------  166 (278)
T PLN02476        104 PDQAQLLAMLVQ-ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA----------------  166 (278)
T ss_pred             HHHHHHHHHHHH-hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc----------------
Confidence            344566666654 667899999999999999999999988899999999999999999999873                


Q ss_pred             CCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC------CCCCeeE
Q psy7837         132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP------DAAPYDV  205 (299)
Q Consensus       132 ~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------~~~~fD~  205 (299)
                                                                       +...+++++.+|+...+.      ..++||+
T Consensus       167 -------------------------------------------------Gl~~~I~li~GdA~e~L~~l~~~~~~~~FD~  197 (278)
T PLN02476        167 -------------------------------------------------GVSHKVNVKHGLAAESLKSMIQNGEGSSYDF  197 (278)
T ss_pred             -------------------------------------------------CCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence                                                             345689999999865321      1257999


Q ss_pred             EEecchhh---hHHHHHHHhccCCcEEEEEec
Q psy7837         206 IYISQAIR---DIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       206 v~~~~~~~---~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      ||+++.-.   ...+.+.++|++||.+++..-
T Consensus       198 VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNv  229 (278)
T PLN02476        198 AFVDADKRMYQDYFELLLQLVRVGGVIVMDNV  229 (278)
T ss_pred             EEECCCHHHHHHHHHHHHHhcCCCcEEEEecC
Confidence            99999754   344688899999999998643

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.34  E-value=1.9e-11  Score=105.38  Aligned_cols=94  Identities=29%  Similarity=0.350  Sum_probs=74.2

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      .++.+|||+|||+|.++..+++.|.. |+++|+++.+++.+++|++.+    ....++.+..+|        .+||+|++
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~----~~~~~~~~~~~~--------~~fD~Vva  185 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELN----GVELNVYLPQGD--------LKADVIVA  185 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHc----CCCceEEEccCC--------CCcCEEEE
Confidence            45899999999999999998888775 999999999999999999874    222344433332        26999998


Q ss_pred             cchhh---hHHHHHHHhccCCcEEEEEecC
Q psy7837         209 SQAIR---DIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       209 ~~~~~---~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      +....   .+.+++.++|+|||.++++...
T Consensus       186 ni~~~~~~~l~~~~~~~LkpgG~lilsgi~  215 (250)
T PRK00517        186 NILANPLLELAPDLARLLKPGGRLILSGIL  215 (250)
T ss_pred             cCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence            76543   4557899999999999998543

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.33  E-value=3e-11  Score=100.33  Aligned_cols=105  Identities=24%  Similarity=0.310  Sum_probs=82.9

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC-CCCee
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD-AAPYD  204 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD  204 (299)
                      ...++.+|||+|||+|.++..+++.  +.+|+++|.++.+++.++++++.     ....+++++.+|+...... ...+|
T Consensus        37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~-----~~~~~v~~~~~d~~~~~~~~~~~~d  111 (196)
T PRK07402         37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDR-----FGVKNVEVIEGSAPECLAQLAPAPD  111 (196)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-----hCCCCeEEEECchHHHHhhCCCCCC
Confidence            4567899999999999999999865  47899999999999999999987     3446899999998642211 13367


Q ss_pred             EEEecch--hhhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         205 VIYISQA--IRDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       205 ~v~~~~~--~~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      .+++...  +..+.+++.++|+|||.+++......
T Consensus       112 ~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~  146 (196)
T PRK07402        112 RVCIEGGRPIKEILQAVWQYLKPGGRLVATASSLE  146 (196)
T ss_pred             EEEEECCcCHHHHHHHHHHhcCCCeEEEEEeecHH
Confidence            7776543  35677899999999999999987643

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.33  E-value=1.2e-11  Score=100.00  Aligned_cols=94  Identities=21%  Similarity=0.350  Sum_probs=74.0

Q ss_pred             CeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchh
Q psy7837         133 SKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAI  212 (299)
Q Consensus       133 ~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~  212 (299)
                      .++||+|||.|.++..++.++.+++++|+++.+++.+++++..       ..+++++++|+...+++ ++||+|++..++
T Consensus        45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~-------~~~V~~~~~dvp~~~P~-~~FDLIV~SEVl  116 (201)
T PF05401_consen   45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG-------LPHVEWIQADVPEFWPE-GRFDLIVLSEVL  116 (201)
T ss_dssp             EEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TTT---S-S-EEEEEEES-G
T ss_pred             ceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC-------CCCeEEEECcCCCCCCC-CCeeEEEEehHh
Confidence            6899999999999999999998999999999999999999855       46999999999886654 789999998876


Q ss_pred             hh---------HHHHHHHhccCCcEEEEEec
Q psy7837         213 RD---------IPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       213 ~~---------~~~~~~~~L~~gG~lv~~~~  234 (299)
                      .-         ..+.+...|+|||.|++...
T Consensus       117 YYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen  117 YYLDDAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             GGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             HcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            42         33578889999999999754

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.32  E-value=3.2e-13  Score=99.49  Aligned_cols=89  Identities=24%  Similarity=0.343  Sum_probs=58.2

Q ss_pred             EEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC--CCCCeeEEEecch
Q psy7837         136 LDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP--DAAPYDVIYISQA  211 (299)
Q Consensus       136 LDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD~v~~~~~  211 (299)
                      ||+|||+|.++..+...  ..+++++|+|+.+++.+++++..     ....+......+......  ..++||+|++..+
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~v   75 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAE-----LGNDNFERLRFDVLDLFDYDPPESFDLVVASNV   75 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHH-----CT---EEEEE--SSS---CCC----SEEEEE-T
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh-----cCCcceeEEEeecCChhhcccccccceehhhhh
Confidence            79999999999999887  77899999999999999888877     344444455444443221  1258999999999


Q ss_pred             hhhHH------HHHHHhccCCcEE
Q psy7837         212 IRDIP------WHIVDQLKLGGRM  229 (299)
Q Consensus       212 ~~~~~------~~~~~~L~~gG~l  229 (299)
                      ++++.      +.+.++|+|||+|
T Consensus        76 l~~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   76 LHHLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             TS--S-HHHHHHHHTTT-TSS-EE
T ss_pred             HhhhhhHHHHHHHHHHHcCCCCCC
Confidence            98763      4789999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.32  E-value=4.9e-12  Score=105.09  Aligned_cols=116  Identities=27%  Similarity=0.390  Sum_probs=92.3

Q ss_pred             hHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCC
Q psy7837          53 DHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYG  132 (299)
Q Consensus        53 ~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~  132 (299)
                      ...+++..|.. .....+||||||++||.+.++++.++++|+++++|.++...+.|++.+.+.                 
T Consensus        32 ~~g~lL~~l~~-~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a-----------------   93 (205)
T PF01596_consen   32 ETGQLLQMLVR-LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA-----------------   93 (205)
T ss_dssp             HHHHHHHHHHH-HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT-----------------
T ss_pred             HHHHHHHHHHH-hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc-----------------
Confidence            34666766654 556689999999999999999999998999999999999999999999873                 


Q ss_pred             CeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC------CCCCeeEE
Q psy7837         133 SKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP------DAAPYDVI  206 (299)
Q Consensus       133 ~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------~~~~fD~v  206 (299)
                                                                      +...+++++.+|+.....      ..++||+|
T Consensus        94 ------------------------------------------------g~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V  125 (205)
T PF01596_consen   94 ------------------------------------------------GLDDRIEVIEGDALEVLPELANDGEEGQFDFV  125 (205)
T ss_dssp             ------------------------------------------------TGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred             ------------------------------------------------CCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence                                                            345689999999864211      12579999


Q ss_pred             Eecchhhh---HHHHHHHhccCCcEEEEEec
Q psy7837         207 YISQAIRD---IPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       207 ~~~~~~~~---~~~~~~~~L~~gG~lv~~~~  234 (299)
                      |+++.-..   ..+.+.++|++||.+++..-
T Consensus       126 FiDa~K~~y~~y~~~~~~ll~~ggvii~DN~  156 (205)
T PF01596_consen  126 FIDADKRNYLEYFEKALPLLRPGGVIIADNV  156 (205)
T ss_dssp             EEESTGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred             EEcccccchhhHHHHHhhhccCCeEEEEccc
Confidence            99997654   34578899999999999753

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.32  E-value=3.2e-11  Score=112.06  Aligned_cols=106  Identities=16%  Similarity=0.271  Sum_probs=86.6

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY  144 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~  144 (299)
                      +++|++|||+|||+|..+..+++.++..|+++++|+++.+++.+++++..                              
T Consensus       250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r------------------------------  299 (434)
T PRK14901        250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQR------------------------------  299 (434)
T ss_pred             CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHH------------------------------
Confidence            78999999999999999999999988778999999999999988888876                              


Q ss_pred             HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC----CCCCCeeEEEecchh--------
Q psy7837         145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY----PDAAPYDVIYISQAI--------  212 (299)
Q Consensus       145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~v~~~~~~--------  212 (299)
                                                          .+..++.++.+|+....    ...++||.|+++++.        
T Consensus       300 ------------------------------------~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r  343 (434)
T PRK14901        300 ------------------------------------LGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHR  343 (434)
T ss_pred             ------------------------------------cCCCeEEEEeCChhhcccccccccccCCEEEEeCCCCccccccc
Confidence                                                35567899999987543    223679999998652        


Q ss_pred             --------------------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         213 --------------------RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       213 --------------------~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                                          ..+.+++.++|||||+|+.++-.-
T Consensus       344 ~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi  387 (434)
T PRK14901        344 HPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL  387 (434)
T ss_pred             CcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence                                133457889999999999876544

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.32  E-value=2e-11  Score=108.63  Aligned_cols=97  Identities=16%  Similarity=0.146  Sum_probs=80.3

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      .++.+|||+|||+|.++..+++.  +.+++++|.++++++.++++..        ..+++++.+|+.......++||+|+
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~--------~~~i~~i~gD~e~lp~~~~sFDvVI  183 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------LKECKIIEGDAEDLPFPTDYADRYV  183 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh--------ccCCeEEeccHHhCCCCCCceeEEE
Confidence            46789999999999999988775  4689999999999999998753        2468899999887555557899999


Q ss_pred             ecchhhh------HHHHHHHhccCCcEEEEEec
Q psy7837         208 ISQAIRD------IPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       208 ~~~~~~~------~~~~~~~~L~~gG~lv~~~~  234 (299)
                      +..++++      +.+++.++|+|||++++...
T Consensus       184 s~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~  216 (340)
T PLN02490        184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGP  216 (340)
T ss_pred             EcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence            9887754      44689999999999988643

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=3.1e-11  Score=103.89  Aligned_cols=100  Identities=25%  Similarity=0.329  Sum_probs=83.3

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      ..+.+|||+|||.|.+++.+++..  .+++.+|+|..+++.+++|+..|     ...+..++..|.......  +||.|+
T Consensus       157 ~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N-----~~~~~~v~~s~~~~~v~~--kfd~Ii  229 (300)
T COG2813         157 DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN-----GVENTEVWASNLYEPVEG--KFDLII  229 (300)
T ss_pred             cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHc-----CCCccEEEEecccccccc--cccEEE
Confidence            345599999999999999999985  47999999999999999999984     555556777777765443  799999


Q ss_pred             ecchhh-----------hHHHHHHHhccCCcEEEEEecCC
Q psy7837         208 ISQAIR-----------DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       208 ~~~~~~-----------~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +|++++           .+.....+.|++||.|.+.....
T Consensus       230 sNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~  269 (300)
T COG2813         230 SNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRH  269 (300)
T ss_pred             eCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCC
Confidence            999985           34568899999999999998743

>PRK06922 hypothetical protein; Provisional

Probab=99.31  E-value=2.7e-11  Score=114.49  Aligned_cols=103  Identities=18%  Similarity=0.340  Sum_probs=82.8

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCCC
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDAA  201 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~  201 (299)
                      +....++.+|||+|||+|.++..+++.  +.+++++|+|+.+++.++++...      ...++.++++|.....  .+.+
T Consensus       413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~------~g~~ie~I~gDa~dLp~~fede  486 (677)
T PRK06922        413 ILDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN------EGRSWNVIKGDAINLSSSFEKE  486 (677)
T ss_pred             HhhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh------cCCCeEEEEcchHhCccccCCC
Confidence            344567899999999999999888865  67899999999999999988655      2347888999987543  3457


Q ss_pred             CeeEEEecchhhhH-------------------HHHHHHhccCCcEEEEEec
Q psy7837         202 PYDVIYISQAIRDI-------------------PWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       202 ~fD~v~~~~~~~~~-------------------~~~~~~~L~~gG~lv~~~~  234 (299)
                      +||+|+++.+++++                   .+++.++|||||.+++...
T Consensus       487 SFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        487 SVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             CEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            89999998776543                   3578899999999999764

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.31  E-value=3.7e-11  Score=109.48  Aligned_cols=102  Identities=25%  Similarity=0.145  Sum_probs=82.7

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCC
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAA  201 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  201 (299)
                      +.....+.++.+|||+|||+|.++..+++. +.+|+++|+|+++++.++++.+.        .++++...|....   .+
T Consensus       159 l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~--------l~v~~~~~D~~~l---~~  227 (383)
T PRK11705        159 ICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG--------LPVEIRLQDYRDL---NG  227 (383)
T ss_pred             HHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc--------CeEEEEECchhhc---CC
Confidence            334446678999999999999999988875 88999999999999999998643        2478888887653   36


Q ss_pred             CeeEEEecchhhhH--------HHHHHHhccCCcEEEEEecC
Q psy7837         202 PYDVIYISQAIRDI--------PWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       202 ~fD~v~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~~  235 (299)
                      +||.|++...++++        .+++.++|||||.+++....
T Consensus       228 ~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~  269 (383)
T PRK11705        228 QFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIG  269 (383)
T ss_pred             CCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence            79999988776543        46789999999999997654

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.31  E-value=3.7e-11  Score=111.16  Aligned_cols=109  Identities=21%  Similarity=0.230  Sum_probs=88.1

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY  144 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~  144 (299)
                      +++|.+|||+|||+|..|..+++.++..|+++++|+++.+++.+++++.+                              
T Consensus       235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r------------------------------  284 (431)
T PRK14903        235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR------------------------------  284 (431)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH------------------------------
Confidence            78999999999999999999999988888999999999999998888877                              


Q ss_pred             HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-CCCCCeeEEEecchhh----------
Q psy7837         145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-PDAAPYDVIYISQAIR----------  213 (299)
Q Consensus       145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~~~----------  213 (299)
                                                          .+..+++++++|+.... ...++||.|+++++..          
T Consensus       285 ------------------------------------~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~  328 (431)
T PRK14903        285 ------------------------------------LKLSSIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPE  328 (431)
T ss_pred             ------------------------------------cCCCeEEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChH
Confidence                                                34457889999987532 1236799999987651          


Q ss_pred             ------------------hHHHHHHHhccCCcEEEEEecCCCCc
Q psy7837         214 ------------------DIPWHIVDQLKLGGRMLFIKGHEDDI  239 (299)
Q Consensus       214 ------------------~~~~~~~~~L~~gG~lv~~~~~~~~~  239 (299)
                                        .+.+++.++|||||.+++++-+....
T Consensus       329 ~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~e  372 (431)
T PRK14903        329 VLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKE  372 (431)
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh
Confidence                              12357889999999999987665443

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.31  E-value=4.3e-11  Score=111.51  Aligned_cols=106  Identities=20%  Similarity=0.284  Sum_probs=86.9

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY  144 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~  144 (299)
                      ..+|++|||+|||+|..+..+++.++..++++++|+++.+++.+++++.+                              
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~------------------------------  297 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASA------------------------------  297 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH------------------------------
Confidence            78899999999999999999999887778999999999999988888876                              


Q ss_pred             HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchh------------
Q psy7837         145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAI------------  212 (299)
Q Consensus       145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~------------  212 (299)
                                                          .+..+++++.+|+.... ..++||+|+++++.            
T Consensus       298 ------------------------------------~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~  340 (445)
T PRK14904        298 ------------------------------------LGITIIETIEGDARSFS-PEEQPDAILLDAPCTGTGVLGRRAEL  340 (445)
T ss_pred             ------------------------------------hCCCeEEEEeCcccccc-cCCCCCEEEEcCCCCCcchhhcCcch
Confidence                                                34457899999987644 34679999987542            


Q ss_pred             ----------------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         213 ----------------RDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       213 ----------------~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                                      ..+..++.++|+|||++++++-+..
T Consensus       341 ~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~  381 (445)
T PRK14904        341 RWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE  381 (445)
T ss_pred             hhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence                            1244678899999999999986654

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.31  E-value=1.9e-11  Score=103.59  Aligned_cols=97  Identities=20%  Similarity=0.225  Sum_probs=80.3

Q ss_pred             CeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q psy7837         133 SKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQ  210 (299)
Q Consensus       133 ~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~  210 (299)
                      ++|||+|||+|.++..+++.  +.+++++|+|+++++.+++++...    +...+++++..|...... .++||+|++..
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~----gl~~~i~~~~~d~~~~~~-~~~fD~I~~~~   75 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL----GLQGRIRIFYRDSAKDPF-PDTYDLVFGFE   75 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc----CCCcceEEEecccccCCC-CCCCCEeehHH
Confidence            47999999999999998876  468999999999999999998763    345688999999865433 35799999988


Q ss_pred             hhhh------HHHHHHHhccCCcEEEEEec
Q psy7837         211 AIRD------IPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       211 ~~~~------~~~~~~~~L~~gG~lv~~~~  234 (299)
                      ++++      +.+++.++|+|||.+++...
T Consensus        76 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~  105 (224)
T smart00828       76 VIHHIKDKMDLFSNISRHLKDGGHLVLADF  105 (224)
T ss_pred             HHHhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence            7754      34689999999999999765

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.30  E-value=4e-11  Score=99.67  Aligned_cols=115  Identities=23%  Similarity=0.311  Sum_probs=93.4

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCC
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGS  133 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~  133 (299)
                      ...++..|.. ..+..+|||+|++.||.+.+++..+..+|+++++|+++++.+.|++++.+.                  
T Consensus        47 ~g~~L~~L~~-~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~a------------------  107 (219)
T COG4122          47 TGALLRLLAR-LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA------------------  107 (219)
T ss_pred             HHHHHHHHHH-hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHc------------------
Confidence            3555655553 678899999999999999999999998999999999999999999999983                  


Q ss_pred             eEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEE-cCCCCCCC--CCCCeeEEEecc
Q psy7837         134 KVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVC-ADGRRGYP--DAAPYDVIYISQ  210 (299)
Q Consensus       134 ~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~-~d~~~~~~--~~~~fD~v~~~~  210 (299)
                                                                     +...++.++. +|..+...  ..++||+||++.
T Consensus       108 -----------------------------------------------g~~~~i~~~~~gdal~~l~~~~~~~fDliFIDa  140 (219)
T COG4122         108 -----------------------------------------------GVDDRIELLLGGDALDVLSRLLDGSFDLVFIDA  140 (219)
T ss_pred             -----------------------------------------------CCcceEEEEecCcHHHHHHhccCCCccEEEEeC
Confidence                                                           4455688888 47664332  247899999998


Q ss_pred             hhh---hHHHHHHHhccCCcEEEEEec
Q psy7837         211 AIR---DIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       211 ~~~---~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      .-.   ...+.+.++|+|||.+++..-
T Consensus       141 dK~~yp~~le~~~~lLr~GGliv~DNv  167 (219)
T COG4122         141 DKADYPEYLERALPLLRPGGLIVADNV  167 (219)
T ss_pred             ChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence            754   455788999999999999753

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.30  E-value=6.3e-11  Score=104.83  Aligned_cols=99  Identities=26%  Similarity=0.362  Sum_probs=80.7

Q ss_pred             CeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q psy7837         133 SKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQ  210 (299)
Q Consensus       133 ~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~  210 (299)
                      .+|||+|||+|.++..++..  +.+|+++|+|+.+++.+++|++.+    +...+++++++|+....+ ..+||+|++++
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~----~l~~~i~~~~~D~~~~l~-~~~fDlIvsNP  209 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERH----GLEDRVTLIESDLFAALP-GRRYDLIVSNP  209 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh----CCCCcEEEEECchhhhCC-CCCccEEEECC
Confidence            68999999999999999876  568999999999999999999874    233579999999865443 35799999986


Q ss_pred             hh-------------------------------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         211 AI-------------------------------RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       211 ~~-------------------------------~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +.                               ..+.+.+.++|+|||.+++..+..
T Consensus       210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~  266 (307)
T PRK11805        210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS  266 (307)
T ss_pred             CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence            43                               123356788999999999987754

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.29  E-value=4.6e-11  Score=102.00  Aligned_cols=99  Identities=25%  Similarity=0.379  Sum_probs=81.3

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      ..+.+|||+|||+|.++..+++.+  .+++++|+++.++..+++++.         .++.++.+|+.......++||+|+
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---------~~~~~~~~d~~~~~~~~~~fD~vi  103 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---------ENVQFICGDAEKLPLEDSSFDLIV  103 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---------CCCeEEecchhhCCCCCCceeEEE
Confidence            345799999999999999998875  458999999999998887632         378899999887655557899999


Q ss_pred             ecchhhhH------HHHHHHhccCCcEEEEEecCCC
Q psy7837         208 ISQAIRDI------PWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       208 ~~~~~~~~------~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      ++.+++++      .+++.++|+|||.+++......
T Consensus       104 ~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~  139 (240)
T TIGR02072       104 SNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPG  139 (240)
T ss_pred             EhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence            99887643      4689999999999999875543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>KOG4300|consensus

Probab=99.29  E-value=2.6e-11  Score=97.78  Aligned_cols=111  Identities=21%  Similarity=0.284  Sum_probs=87.4

Q ss_pred             HHHhhhcccCCCCeEEEEcCCCcHHHHHHHH-cCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeE-EEEcCCCCCC-
Q psy7837         121 KRINFYGHLVYGSKVLDIGSGSGYLSALFAY-MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFE-FVCADGRRGY-  197 (299)
Q Consensus       121 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~-~~~~d~~~~~-  197 (299)
                      +.+..+........|||+|||+|..-..+-. .+.+|+++|.+++|-+.+.+.+..     ....++. |++++..+.. 
T Consensus        66 s~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E-----~k~~~~~~fvva~ge~l~~  140 (252)
T KOG4300|consen   66 SGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAE-----KKPLQVERFVVADGENLPQ  140 (252)
T ss_pred             hhhHHHhcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhh-----ccCcceEEEEeechhcCcc
Confidence            3344444444456789999999998777653 588999999999999999999887     4556776 8999988754 


Q ss_pred             CCCCCeeEEEecchhh------hHHHHHHHhccCCcEEEEEecCC
Q psy7837         198 PDAAPYDVIYISQAIR------DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       198 ~~~~~fD~v~~~~~~~------~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      .+++++|.|++..++.      ....++.++|+|||++++.....
T Consensus       141 l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva  185 (252)
T KOG4300|consen  141 LADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVA  185 (252)
T ss_pred             cccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEeccc
Confidence            4568999999988774      34579999999999999976544

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.28  E-value=1.3e-11  Score=114.81  Aligned_cols=142  Identities=18%  Similarity=0.125  Sum_probs=105.3

Q ss_pred             HHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC
Q psy7837         118 TYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY  197 (299)
Q Consensus       118 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  197 (299)
                      .+++.+.......++.+|||+|||+|.+++.+++.+..|+++|+++.+++.+++|++.     ....+++++.+|+....
T Consensus       279 ~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~-----~~~~nv~~~~~d~~~~l  353 (431)
T TIGR00479       279 KLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAEL-----NGIANVEFLAGTLETVL  353 (431)
T ss_pred             HHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHH-----hCCCceEEEeCCHHHHH
Confidence            3444444444566778999999999999999999888999999999999999999988     35679999999986422


Q ss_pred             ----CCCCCeeEEEecchhh----hHHHHHHHhccCCcEEEEEecCCCCcceeeeEEeecCCceEEEEecceeccccccc
Q psy7837         198 ----PDAAPYDVIYISQAIR----DIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKS  269 (299)
Q Consensus       198 ----~~~~~fD~v~~~~~~~----~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (299)
                          ....+||+|+++++-.    .+.+.+. .+++++.+++++.+......+..+   .+.++..+.+.++.++ |.+.
T Consensus       354 ~~~~~~~~~~D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvsc~p~tlard~~~l---~~~gy~~~~~~~~DmF-P~T~  428 (431)
T TIGR00479       354 PKQPWAGQIPDVLLLDPPRKGCAAEVLRTII-ELKPERIVYVSCNPATLARDLEFL---CKEGYGITWVQPVDMF-PHTA  428 (431)
T ss_pred             HHHHhcCCCCCEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEcCCHHHHHHHHHHH---HHCCeeEEEEEEeccC-CCCC
Confidence                1235699999998753    3334433 478999988988765433333333   3345888888888888 6653

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PLN03075 nicotianamine synthase; Provisional

Probab=99.28  E-value=9.9e-11  Score=101.68  Aligned_cols=104  Identities=17%  Similarity=0.216  Sum_probs=82.4

Q ss_pred             CCCCEEEEEccCCC-HHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837          66 KYGDKVLEIGTGSG-YLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY  144 (299)
Q Consensus        66 ~~g~~vldiG~G~G-~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~  144 (299)
                      .++++|+|||||.| +.+..++....++++++++|+++.+++.|++.+...                             
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~-----------------------------  172 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD-----------------------------  172 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc-----------------------------
Confidence            37899999999966 556667767778899999999999999999888541                             


Q ss_pred             HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhh--------hHH
Q psy7837         145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIR--------DIP  216 (299)
Q Consensus       145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~--------~~~  216 (299)
                                                         .....+++|..+|+.+.....+.||+|++. ++.        .+.
T Consensus       173 -----------------------------------~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL  216 (296)
T PLN03075        173 -----------------------------------PDLSKRMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVI  216 (296)
T ss_pred             -----------------------------------cCccCCcEEEECchhhcccccCCcCEEEEe-cccccccccHHHHH
Confidence                                               034568999999998754334679999999 432        345


Q ss_pred             HHHHHhccCCcEEEEEec
Q psy7837         217 WHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       217 ~~~~~~L~~gG~lv~~~~  234 (299)
                      +++.+.|+|||.+++-..
T Consensus       217 ~~l~~~LkPGG~Lvlr~~  234 (296)
T PLN03075        217 EHLGKHMAPGALLMLRSA  234 (296)
T ss_pred             HHHHHhcCCCcEEEEecc
Confidence            789999999999999873

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.27  E-value=9.4e-11  Score=100.92  Aligned_cols=98  Identities=19%  Similarity=0.198  Sum_probs=77.8

Q ss_pred             CCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC--CCCeeEEE
Q psy7837         132 GSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD--AAPYDVIY  207 (299)
Q Consensus       132 ~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~v~  207 (299)
                      +.+|||+|||+|.+++.+++.  +.+|+++|+|+.+++.+++|++.+        +.+++++|.......  .++||+|+
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~--------~~~~~~~D~~~~l~~~~~~~fDlVv  158 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA--------GGTVHEGDLYDALPTALRGRVDILA  158 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--------CCEEEEeechhhcchhcCCCEeEEE
Confidence            458999999999999998865  568999999999999999998773        247889998754321  25799999


Q ss_pred             ecchhh--------------------------------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837         208 ISQAIR--------------------------------DIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       208 ~~~~~~--------------------------------~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      +|++..                                .+.+.+.++|+|||++++......
T Consensus       159 ~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~  220 (251)
T TIGR03704       159 ANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQ  220 (251)
T ss_pred             ECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcch
Confidence            998642                                222456789999999999987654

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.27  E-value=1.2e-10  Score=105.42  Aligned_cols=130  Identities=22%  Similarity=0.288  Sum_probs=88.6

Q ss_pred             ccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHH
Q psy7837          39 PHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET  118 (299)
Q Consensus        39 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~  118 (299)
                      ...+..+..+..|.. ..+++.+.+.+.++.+|||+|||+|.++..++.... ..+++++|+++.+++.+++++..    
T Consensus       224 ~f~V~p~vLIPRpeT-E~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~----  297 (423)
T PRK14966        224 RFAVNPNVLIPRPET-EHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAAD----  297 (423)
T ss_pred             EEEeCCCccCCCccH-HHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHH----
Confidence            344444444444443 566666665577788999999999999988876532 35677777777777766666654    


Q ss_pred             HHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-
Q psy7837         119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-  197 (299)
Q Consensus       119 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-  197 (299)
                                                                                    .. .+++++++|..... 
T Consensus       298 --------------------------------------------------------------~g-~rV~fi~gDl~e~~l  314 (423)
T PRK14966        298 --------------------------------------------------------------LG-ARVEFAHGSWFDTDM  314 (423)
T ss_pred             --------------------------------------------------------------cC-CcEEEEEcchhcccc
Confidence                                                                          22 37899999986532 


Q ss_pred             CCCCCeeEEEecchhh-------------------------------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837         198 PDAAPYDVIYISQAIR-------------------------------DIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       198 ~~~~~fD~v~~~~~~~-------------------------------~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      +..++||+|++|++..                               .+.+.+.+.|+|||.+++..+...
T Consensus       315 ~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q  385 (423)
T PRK14966        315 PSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQ  385 (423)
T ss_pred             ccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccH
Confidence            2235799999988641                               122356679999999998886643

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.26  E-value=1.5e-10  Score=101.20  Aligned_cols=102  Identities=27%  Similarity=0.335  Sum_probs=81.7

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI  206 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  206 (299)
                      ..++.+|||+|||+|.++..++...  .+++++|+++.+++.++++++.     ....++.++.+|...... .++||+|
T Consensus       106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~-----~~~~~i~~~~~d~~~~~~-~~~fD~I  179 (275)
T PRK09328        106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH-----GLGARVEFLQGDWFEPLP-GGRFDLI  179 (275)
T ss_pred             ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh-----CCCCcEEEEEccccCcCC-CCceeEE
Confidence            3567899999999999999998874  7899999999999999999873     345689999999866443 3689999


Q ss_pred             Eecchhh--------------------------------hHHHHHHHhccCCcEEEEEecCC
Q psy7837         207 YISQAIR--------------------------------DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       207 ~~~~~~~--------------------------------~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +++++..                                .+.+++.++|++||.+++..+..
T Consensus       180 v~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~  241 (275)
T PRK09328        180 VSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYD  241 (275)
T ss_pred             EECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECch
Confidence            9986531                                12245669999999999977543

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.26  E-value=1.2e-10  Score=104.51  Aligned_cols=97  Identities=20%  Similarity=0.256  Sum_probs=79.0

Q ss_pred             CCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837         132 GSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS  209 (299)
Q Consensus       132 ~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  209 (299)
                      ..+|||+|||+|.++..+++.+  .+|+++|+++.+++.++++++.+     .. ..+++.+|.....  .++||+|+++
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n-----~l-~~~~~~~D~~~~~--~~~fDlIvsN  268 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN-----GL-EGEVFASNVFSDI--KGRFDMIISN  268 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-----CC-CCEEEEccccccc--CCCccEEEEC
Confidence            4589999999999999999874  58999999999999999999884     22 3567778876532  3679999999


Q ss_pred             chhhh-----------HHHHHHHhccCCcEEEEEecCC
Q psy7837         210 QAIRD-----------IPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       210 ~~~~~-----------~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ++++.           +..++.+.|+|||.+++..+..
T Consensus       269 PPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~  306 (342)
T PRK09489        269 PPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAF  306 (342)
T ss_pred             CCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCC
Confidence            88753           3457889999999999987653

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.26  E-value=9.7e-11  Score=100.05  Aligned_cols=102  Identities=25%  Similarity=0.351  Sum_probs=83.2

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcC---CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMG---AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      ..++.+|||+|||+|.++..++..+   .+++++|+++.+++.+++++...    ....++.++.+|........++||+
T Consensus        49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~----~~~~~~~~~~~d~~~~~~~~~~~D~  124 (239)
T PRK00216         49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL----GLSGNVEFVQGDAEALPFPDNSFDA  124 (239)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc----ccccCeEEEecccccCCCCCCCccE
Confidence            4467899999999999999998775   78999999999999999987652    2345789999998865544578999


Q ss_pred             EEecchhh------hHHHHHHHhccCCcEEEEEec
Q psy7837         206 IYISQAIR------DIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       206 v~~~~~~~------~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      |++...++      .+.+.+.+.|++||.+++...
T Consensus       125 I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~  159 (239)
T PRK00216        125 VTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF  159 (239)
T ss_pred             EEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence            99877654      345688999999999988654

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.26  E-value=1.5e-10  Score=99.76  Aligned_cols=99  Identities=27%  Similarity=0.284  Sum_probs=81.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      .+.+|||+|||+|.++..++..  +..++++|+++.+++.++++++.     ....++.++.+|+.... ..++||+|++
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~-----~~~~~~~~~~~d~~~~~-~~~~fD~Vi~  160 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAAR-----LGLDNVTFLQSDWFEPL-PGGKFDLIVS  160 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-----cCCCeEEEEECchhccC-cCCceeEEEE
Confidence            3569999999999999999886  56899999999999999999987     34557999999987643 3478999999


Q ss_pred             cchhh--------------------------------hHHHHHHHhccCCcEEEEEecC
Q psy7837         209 SQAIR--------------------------------DIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       209 ~~~~~--------------------------------~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ++++.                                .+.+++.+.|+|||.+++....
T Consensus       161 npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~  219 (251)
T TIGR03534       161 NPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY  219 (251)
T ss_pred             CCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc
Confidence            76532                                2335778899999999998754

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.25  E-value=5.9e-11  Score=99.42  Aligned_cols=96  Identities=19%  Similarity=0.200  Sum_probs=73.7

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY  144 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~  144 (299)
                      +++|.+|||+|||+|.++..+++..++.++|+++|+++.          .                              
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----------~------------------------------   88 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----------D------------------------------   88 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----------c------------------------------
Confidence            588999999999999999999999888889999998771          1                              


Q ss_pred             HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--------CCCCCeeEEEecchh----
Q psy7837         145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--------PDAAPYDVIYISQAI----  212 (299)
Q Consensus       145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~fD~v~~~~~~----  212 (299)
                                                           ...++.++++|+....        ...++||+|+++...    
T Consensus        89 -------------------------------------~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g  131 (209)
T PRK11188         89 -------------------------------------PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSG  131 (209)
T ss_pred             -------------------------------------CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCC
Confidence                                                 1235778888877531        234679999987632    


Q ss_pred             -------------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         213 -------------RDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       213 -------------~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                                   ..+.+++.++|+|||.+++.+....
T Consensus       132 ~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~  169 (209)
T PRK11188        132 TPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE  169 (209)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc
Confidence                         2245789999999999999765543

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.25  E-value=3.4e-11  Score=104.44  Aligned_cols=106  Identities=18%  Similarity=0.214  Sum_probs=77.7

Q ss_pred             CCCCeEEEEcCCCcH----HHHHHHHc-------CCeEEEEeCChHHHHHHHHHHHh------c------------CCc-
Q psy7837         130 VYGSKVLDIGSGSGY----LSALFAYM-------GAKVYAIEHVKNLCKRAMKNIRR------G------------APA-  179 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~----~~~~la~~-------~~~v~~~D~~~~~~~~a~~~~~~------~------------~~~-  179 (299)
                      .++.+|||+|||+|.    +++.++..       +.+|+|+|+|+.+++.|++.+-.      .            +.. 
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~  177 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY  177 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence            456799999999995    44445443       35799999999999999985410      0            000 


Q ss_pred             ---ccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhh--------HHHHHHHhccCCcEEEEEecC
Q psy7837         180 ---IALAENFEFVCADGRRGYPDAAPYDVIYISQAIRD--------IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       180 ---~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~  235 (299)
                         .....++.|.++|.....+..++||+|+|.+++.+        +.+++.+.|+|||.|++....
T Consensus       178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E  244 (264)
T smart00138      178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSE  244 (264)
T ss_pred             EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcc
Confidence               00124789999999876555678999999988754        445889999999999986543

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.25  E-value=1.5e-10  Score=107.90  Aligned_cols=106  Identities=24%  Similarity=0.254  Sum_probs=84.9

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY  144 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~  144 (299)
                      +++|++|||+|||+|..+..+++.+++.++++++|+++.+++.+++++.+                              
T Consensus       248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~------------------------------  297 (444)
T PRK14902        248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKR------------------------------  297 (444)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH------------------------------
Confidence            78899999999999999999999887778999999999999888888876                              


Q ss_pred             HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCeeEEEecchhh----------
Q psy7837         145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYDVIYISQAIR----------  213 (299)
Q Consensus       145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~~~----------  213 (299)
                                                          .+..++.++++|+..... -.++||+|+++++..          
T Consensus       298 ------------------------------------~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~  341 (444)
T PRK14902        298 ------------------------------------LGLTNIETKALDARKVHEKFAEKFDKILVDAPCSGLGVIRRKPD  341 (444)
T ss_pred             ------------------------------------cCCCeEEEEeCCcccccchhcccCCEEEEcCCCCCCeeeccCcc
Confidence                                                344568999999875421 126799999987521          


Q ss_pred             ------------------hHHHHHHHhccCCcEEEEEecCC
Q psy7837         214 ------------------DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       214 ------------------~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                                        .+.+.+.++|||||.|+.++-..
T Consensus       342 ~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  382 (444)
T PRK14902        342 IKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI  382 (444)
T ss_pred             hhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence                              24467889999999999875443

>KOG1540|consensus

Probab=99.25  E-value=1.5e-10  Score=96.45  Aligned_cols=114  Identities=19%  Similarity=0.197  Sum_probs=80.4

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY  144 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~  144 (299)
                      ...|+++||++||+|-.+..+.+.+...                     .                              
T Consensus        98 p~~~m~~lDvaGGTGDiaFril~~v~s~---------------------~------------------------------  126 (296)
T KOG1540|consen   98 PGKGMKVLDVAGGTGDIAFRILRHVKSQ---------------------F------------------------------  126 (296)
T ss_pred             CCCCCeEEEecCCcchhHHHHHHhhccc---------------------c------------------------------
Confidence            4677899999999999999988877542                     0                              


Q ss_pred             HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhh------hHHHH
Q psy7837         145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIR------DIPWH  218 (299)
Q Consensus       145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~------~~~~~  218 (299)
                           ...+.+|+.+|+|++|+..++++....  ++.....+.++.+|+.+.+.++++||...+...+.      ...++
T Consensus       127 -----~~~~~~V~v~Dinp~mL~vgkqRa~~~--~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~E  199 (296)
T KOG1540|consen  127 -----GDRESKVTVLDINPHMLAVGKQRAKKR--PLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALRE  199 (296)
T ss_pred             -----CCCCceEEEEeCCHHHHHHHHHHHhhc--CCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHH
Confidence                 012234555555555555555544321  01223459999999999888889999999888764      34469


Q ss_pred             HHHhccCCcEEEEEecCC
Q psy7837         219 IVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       219 ~~~~L~~gG~lv~~~~~~  236 (299)
                      ++|+|||||++.+-..+.
T Consensus       200 AYRVLKpGGrf~cLeFsk  217 (296)
T KOG1540|consen  200 AYRVLKPGGRFSCLEFSK  217 (296)
T ss_pred             HHHhcCCCcEEEEEEccc
Confidence            999999999988765443

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.24  E-value=1.2e-10  Score=104.91  Aligned_cols=103  Identities=19%  Similarity=0.163  Sum_probs=86.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC--CCCCCCeeE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG--YPDAAPYDV  205 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~  205 (299)
                      ..+..+||||||+|.++..+|+.  ...++|+|+++.++..+.+++..     ....|+.++.+|+...  ..+.+++|.
T Consensus       121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~-----~gL~NV~~i~~DA~~ll~~~~~~s~D~  195 (390)
T PRK14121        121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIEL-----LNLKNLLIINYDARLLLELLPSNSVEK  195 (390)
T ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH-----cCCCcEEEEECCHHHhhhhCCCCceeE
Confidence            34679999999999999999988  46799999999999999999887     4667999999998642  234578999


Q ss_pred             EEecchhh------------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837         206 IYISQAIR------------DIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       206 v~~~~~~~------------~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      |+++.+..            .+.+++.++|++||.+.+.+....
T Consensus       196 I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~  239 (390)
T PRK14121        196 IFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSEL  239 (390)
T ss_pred             EEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHH
Confidence            99987654            356789999999999999876543

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.24  E-value=2.6e-10  Score=94.37  Aligned_cols=102  Identities=18%  Similarity=0.171  Sum_probs=78.6

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCeeEEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYDVIY  207 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~  207 (299)
                      .++.+|||+|||+|.+++.++.+ ..+|+++|.++.+++.+++|++.+     ...+++++.+|+..... ...+||+|+
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~-----~~~~v~~~~~D~~~~l~~~~~~fDlV~  126 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATL-----KAGNARVVNTNALSFLAQPGTPHNVVF  126 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHh-----CCCcEEEEEchHHHHHhhcCCCceEEE
Confidence            45789999999999999976555 467999999999999999999883     45689999999875332 224699999


Q ss_pred             ecchh-hhHHH----HHHH--hccCCcEEEEEecCC
Q psy7837         208 ISQAI-RDIPW----HIVD--QLKLGGRMLFIKGHE  236 (299)
Q Consensus       208 ~~~~~-~~~~~----~~~~--~L~~gG~lv~~~~~~  236 (299)
                      +++++ ..+.+    .+..  +|++++++++.....
T Consensus       127 ~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~  162 (199)
T PRK10909        127 VDPPFRKGLLEETINLLEDNGWLADEALIYVESEVE  162 (199)
T ss_pred             ECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence            99994 23333    3333  368899999987654

>PRK05785 hypothetical protein; Provisional

Probab=99.24  E-value=7.2e-11  Score=100.11  Aligned_cols=83  Identities=22%  Similarity=0.151  Sum_probs=69.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS  209 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  209 (299)
                      ++.+|||+|||+|.++..+++. +.+|+++|+|++|++.++++             ..++++|+...+.++++||+|++.
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~-------------~~~~~~d~~~lp~~d~sfD~v~~~  117 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA-------------DDKVVGSFEALPFRDKSFDVVMSS  117 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc-------------cceEEechhhCCCCCCCEEEEEec
Confidence            4789999999999999999988 68999999999999998763             124678888766667899999999


Q ss_pred             chhhhH------HHHHHHhccCC
Q psy7837         210 QAIRDI------PWHIVDQLKLG  226 (299)
Q Consensus       210 ~~~~~~------~~~~~~~L~~g  226 (299)
                      .+++++      .+++.++|||.
T Consensus       118 ~~l~~~~d~~~~l~e~~RvLkp~  140 (226)
T PRK05785        118 FALHASDNIEKVIAEFTRVSRKQ  140 (226)
T ss_pred             ChhhccCCHHHHHHHHHHHhcCc
Confidence            988654      36899999994

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.24  E-value=1.1e-10  Score=98.32  Aligned_cols=103  Identities=19%  Similarity=0.140  Sum_probs=76.3

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCC-------cccCCCCeEEEEcCCCCCCCC-CC
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAP-------AIALAENFEFVCADGRRGYPD-AA  201 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~-------~~~~~~~v~~~~~d~~~~~~~-~~  201 (299)
                      .++.+|||+|||.|..+..++++|.+|+++|+|+.+++.+.+.......       ......++++.++|+...... ..
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~  115 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA  115 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence            3478999999999999999999999999999999999987432111000       001235789999999865432 25


Q ss_pred             CeeEEEecchhhhH--------HHHHHHhccCCcEEEEE
Q psy7837         202 PYDVIYISQAIRDI--------PWHIVDQLKLGGRMLFI  232 (299)
Q Consensus       202 ~fD~v~~~~~~~~~--------~~~~~~~L~~gG~lv~~  232 (299)
                      .||.|+-..++.++        .+.+.++|+|||.+++.
T Consensus       116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~  154 (218)
T PRK13255        116 DVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV  154 (218)
T ss_pred             CeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence            79999977766554        35789999999975543

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.23  E-value=2.4e-10  Score=100.38  Aligned_cols=100  Identities=24%  Similarity=0.298  Sum_probs=80.7

Q ss_pred             CeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q psy7837         133 SKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQ  210 (299)
Q Consensus       133 ~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~  210 (299)
                      .+|||+|||+|.+++.++..  +.+|+++|+|+.+++.+++|++.+    ....++.++.+|....... .+||+|++++
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~----~~~~~v~~~~~d~~~~~~~-~~fDlIvsNP  190 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKN----QLEHRVEFIQSNLFEPLAG-QKIDIIVSNP  190 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc----CCCCcEEEEECchhccCcC-CCccEEEECC
Confidence            68999999999999999886  468999999999999999999873    2334599999998764432 4799999986


Q ss_pred             hhh-------------------------------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837         211 AIR-------------------------------DIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       211 ~~~-------------------------------~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      +..                               .+.+.+.+.|+|||.+++.++...
T Consensus       191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q  248 (284)
T TIGR00536       191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQ  248 (284)
T ss_pred             CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccH
Confidence            431                               223467789999999999988654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.23  E-value=1.7e-10  Score=106.92  Aligned_cols=57  Identities=16%  Similarity=0.154  Sum_probs=48.7

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+...|.  +.+|++|||+|||+|..+..+++.++ +++++++|+++.+++.+++++.+
T Consensus       228 ~~~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r  284 (426)
T TIGR00563       228 QWVATWLA--PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKR  284 (426)
T ss_pred             HHHHHHhC--CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHH
Confidence            33444454  78999999999999999999999886 78999999999999999888876

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.22  E-value=9.5e-11  Score=99.96  Aligned_cols=115  Identities=18%  Similarity=0.277  Sum_probs=92.5

Q ss_pred             hHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCC
Q psy7837          53 DHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYG  132 (299)
Q Consensus        53 ~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~  132 (299)
                      ....++..|.. .....+|||+|++.||.+.++++.++++|+++++|.++...+.|++.+.+.                 
T Consensus        66 ~~g~lL~~l~~-~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a-----------------  127 (247)
T PLN02589         66 DEGQFLNMLLK-LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA-----------------  127 (247)
T ss_pred             HHHHHHHHHHH-HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC-----------------
Confidence            34566666654 556689999999999999999999988999999999999999999999873                 


Q ss_pred             CeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC-------CCCeeE
Q psy7837         133 SKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD-------AAPYDV  205 (299)
Q Consensus       133 ~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~fD~  205 (299)
                                                                      +...+++++.+|+.+.++.       .++||+
T Consensus       128 ------------------------------------------------g~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~  159 (247)
T PLN02589        128 ------------------------------------------------GVAHKIDFREGPALPVLDQMIEDGKYHGTFDF  159 (247)
T ss_pred             ------------------------------------------------CCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence                                                            4567899999988753221       258999


Q ss_pred             EEecchhhh---HHHHHHHhccCCcEEEEEe
Q psy7837         206 IYISQAIRD---IPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       206 v~~~~~~~~---~~~~~~~~L~~gG~lv~~~  233 (299)
                      ||+++.-..   ..+.+.++|++||.+++..
T Consensus       160 iFiDadK~~Y~~y~~~~l~ll~~GGviv~DN  190 (247)
T PLN02589        160 IFVDADKDNYINYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_pred             EEecCCHHHhHHHHHHHHHhcCCCeEEEEcC
Confidence            999987543   3357789999999988864

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.22  E-value=1.8e-10  Score=99.18  Aligned_cols=124  Identities=18%  Similarity=0.138  Sum_probs=84.3

Q ss_pred             eEEEEeCCHHHHH-HHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHH
Q psy7837          94 KVYTIEHIPELLE-AARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMK  171 (299)
Q Consensus        94 ~v~~~d~~~~~~~-~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~  171 (299)
                      .+++++|+.+-.. ...+++..          .+ ....|++|||||||+|+++..++..|++ |+|+|.+.......+.
T Consensus        88 ~l~gi~IDtEWrSd~KW~rl~p----------~l-~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~  156 (315)
T PF08003_consen   88 SLFGIHIDTEWRSDWKWDRLLP----------HL-PDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEA  156 (315)
T ss_pred             ccCCEeecccccccchHHHHHh----------hh-CCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHH
Confidence            5778888776642 22233322          11 2357999999999999999999999986 9999999887666443


Q ss_pred             HHHhcCCcccCCCC-eEEEEcCCCCCCCCCCCeeEEEecchhhhH------HHHHHHhccCCcEEEEEec
Q psy7837         172 NIRRGAPAIALAEN-FEFVCADGRRGYPDAAPYDVIYISQAIRDI------PWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       172 ~~~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~------~~~~~~~L~~gG~lv~~~~  234 (299)
                      .-+-     .+... +.+...-+..... .+.||+|++-+++.|.      ..++...|++||.|++.+.
T Consensus       157 i~~~-----lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETl  220 (315)
T PF08003_consen  157 IKHF-----LGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETL  220 (315)
T ss_pred             HHHH-----hCCCccEEEcCcchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEe
Confidence            2222     11222 2222223333333 5789999999998653      4689999999999998754

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.21  E-value=2.1e-10  Score=92.95  Aligned_cols=101  Identities=20%  Similarity=0.165  Sum_probs=78.4

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      .....++.+|||+|||+|.++..+++.+.+++++|+++.+++.+++++..       ..+++++.+|+.........||.
T Consensus         8 ~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~-------~~~v~ii~~D~~~~~~~~~~~d~   80 (169)
T smart00650        8 AANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA-------ADNLTVIHGDALKFDLPKLQPYK   80 (169)
T ss_pred             hcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc-------CCCEEEEECchhcCCccccCCCE
Confidence            34556788999999999999999999988999999999999999988743       35899999999876554456999


Q ss_pred             EEecchhhhHHH---HHHHh--ccCCcEEEEEe
Q psy7837         206 IYISQAIRDIPW---HIVDQ--LKLGGRMLFIK  233 (299)
Q Consensus       206 v~~~~~~~~~~~---~~~~~--L~~gG~lv~~~  233 (299)
                      |+++.+++...+   .+.+.  +.++|.+++..
T Consensus        81 vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~  113 (169)
T smart00650       81 VVGNLPYNISTPILFKLLEEPPAFRDAVLMVQK  113 (169)
T ss_pred             EEECCCcccHHHHHHHHHhcCCCcceEEEEEEH
Confidence            999988764333   33322  23667776654

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.21  E-value=9.3e-11  Score=110.47  Aligned_cols=99  Identities=23%  Similarity=0.375  Sum_probs=80.0

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC--CCCCCCCeeEE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR--GYPDAAPYDVI  206 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~v  206 (299)
                      ..++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++..       ....++.++++|+..  ...+.++||+|
T Consensus        35 ~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~-------~~~~~i~~~~~d~~~~~~~~~~~~fD~I  107 (475)
T PLN02336         35 PYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESIN-------GHYKNVKFMCADVTSPDLNISDGSVDLI  107 (475)
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHh-------ccCCceEEEEecccccccCCCCCCEEEE
Confidence            346779999999999999999999889999999999998876532       234689999999863  22344789999


Q ss_pred             Eecchhhh--------HHHHHHHhccCCcEEEEEec
Q psy7837         207 YISQAIRD--------IPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       207 ~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~  234 (299)
                      +++.++++        +.+++.++|+|||++++...
T Consensus       108 ~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~  143 (475)
T PLN02336        108 FSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRES  143 (475)
T ss_pred             ehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            99988764        33578999999999998653

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.21  E-value=3e-10  Score=105.29  Aligned_cols=104  Identities=20%  Similarity=0.257  Sum_probs=81.1

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY  144 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~  144 (299)
                      +.+|++|||+|||+|..+..+++..+. ++++++|+++.+++.+++++..                              
T Consensus       242 ~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~------------------------------  290 (427)
T PRK10901        242 PQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQR------------------------------  290 (427)
T ss_pred             CCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHH------------------------------
Confidence            789999999999999999999987743 7899999999888888888766                              


Q ss_pred             HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCCCCeeEEEecchhh---------
Q psy7837         145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDAAPYDVIYISQAIR---------  213 (299)
Q Consensus       145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~~~~~~---------  213 (299)
                                                          .+. ++.++++|+....  ...++||.|+++++..         
T Consensus       291 ------------------------------------~g~-~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p  333 (427)
T PRK10901        291 ------------------------------------LGL-KATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHP  333 (427)
T ss_pred             ------------------------------------cCC-CeEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCc
Confidence                                                222 3678888887532  2346799999887532         


Q ss_pred             -------------------hHHHHHHHhccCCcEEEEEecCC
Q psy7837         214 -------------------DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       214 -------------------~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                                         .+.+.+.++|||||++++++...
T Consensus       334 ~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  375 (427)
T PRK10901        334 DIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI  375 (427)
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence                               24457888999999999887543

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.21  E-value=1.1e-10  Score=106.49  Aligned_cols=101  Identities=23%  Similarity=0.238  Sum_probs=79.9

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCC-CCeEEEEcCCCCCCC----CCCCe
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALA-ENFEFVCADGRRGYP----DAAPY  203 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~----~~~~f  203 (299)
                      .++++|||+|||+|.+++.++..++ +|+++|+|+.+++.+++|++.|    +.. .+++++++|+.....    ...+|
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~N----gl~~~~v~~i~~D~~~~l~~~~~~~~~f  294 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELN----KLDLSKAEFVRDDVFKLLRTYRDRGEKF  294 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----CCCCCcEEEEEccHHHHHHHHHhcCCCC
Confidence            4588999999999999998777765 7999999999999999999984    222 479999999875321    23579


Q ss_pred             eEEEecchhh---------------hHHHHHHHhccCCcEEEEEec
Q psy7837         204 DVIYISQAIR---------------DIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       204 D~v~~~~~~~---------------~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      |+|+++++.-               .+.....++|++||.+++...
T Consensus       295 DlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc  340 (396)
T PRK15128        295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC  340 (396)
T ss_pred             CEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            9999998741               122356889999999987543

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.21  E-value=9.3e-11  Score=94.67  Aligned_cols=99  Identities=20%  Similarity=0.291  Sum_probs=82.4

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHH-cCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCCCCeeE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAY-MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDAAPYDV  205 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~  205 (299)
                      +.++.+|||+|||.|.+...+.. ++.+.+|+|+++..+..+.++            .+.++++|+...+  .++++||.
T Consensus        11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r------------Gv~Viq~Dld~gL~~f~d~sFD~   78 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR------------GVSVIQGDLDEGLADFPDQSFDY   78 (193)
T ss_pred             cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc------------CCCEEECCHHHhHhhCCCCCccE
Confidence            57799999999999999998877 588999999999988777654            6779999998643  45689999


Q ss_pred             EEecchhhhHH---HHHHHhccCCcEEEEEecCCCCc
Q psy7837         206 IYISQAIRDIP---WHIVDQLKLGGRMLFIKGHEDDI  239 (299)
Q Consensus       206 v~~~~~~~~~~---~~~~~~L~~gG~lv~~~~~~~~~  239 (299)
                      |+++.+++++.   .-+.++|+-|...++++++-...
T Consensus        79 VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W  115 (193)
T PF07021_consen   79 VILSQTLQAVRRPDEVLEEMLRVGRRAIVSFPNFGHW  115 (193)
T ss_pred             EehHhHHHhHhHHHHHHHHHHHhcCeEEEEecChHHH
Confidence            99999998765   35677888999999999886544

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.21  E-value=2.3e-10  Score=95.40  Aligned_cols=77  Identities=14%  Similarity=0.183  Sum_probs=64.2

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      .+.++.+|||+|||+|..+..+++.  +.+++|+|+|+.+++.|++++          .++.+.++|+.. +...++||+
T Consensus        40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~----------~~~~~~~~d~~~-~~~~~sfD~  108 (204)
T TIGR03587        40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL----------PNINIIQGSLFD-PFKDNFFDL  108 (204)
T ss_pred             hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC----------CCCcEEEeeccC-CCCCCCEEE
Confidence            3456789999999999999999876  678999999999999998763          246778888877 445578999


Q ss_pred             EEecchhhhH
Q psy7837         206 IYISQAIRDI  215 (299)
Q Consensus       206 v~~~~~~~~~  215 (299)
                      |+++.+++++
T Consensus       109 V~~~~vL~hl  118 (204)
T TIGR03587       109 VLTKGVLIHI  118 (204)
T ss_pred             EEECChhhhC
Confidence            9999998765

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.20  E-value=2.2e-10  Score=97.75  Aligned_cols=102  Identities=21%  Similarity=0.312  Sum_probs=82.6

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-CCCCCeeEE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-PDAAPYDVI  206 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v  206 (299)
                      ...++.+|||+|||+|.++..+++.+.+++++|+++.++..+++++...      ..++.++..|..... ...++||+|
T Consensus        45 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~~~~~~fD~I  118 (233)
T PRK05134         45 GGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALES------GLKIDYRQTTAEELAAEHPGQFDVV  118 (233)
T ss_pred             cCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHc------CCceEEEecCHHHhhhhcCCCccEE
Confidence            4567889999999999999999999999999999999999999887652      226778888776533 233689999


Q ss_pred             Eecchhhh------HHHHHHHhccCCcEEEEEecC
Q psy7837         207 YISQAIRD------IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       207 ~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ++..++.+      +.+.+.+.|+|||.+++....
T Consensus       119 i~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~  153 (233)
T PRK05134        119 TCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN  153 (233)
T ss_pred             EEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence            99876653      446889999999999988654

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.20  E-value=3.3e-10  Score=96.03  Aligned_cols=102  Identities=25%  Similarity=0.390  Sum_probs=82.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC-CCCeeEEEe
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD-AAPYDVIYI  208 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~~  208 (299)
                      ..+.+|||+|||+|.++..+++.+..++++|.++.+++.+++++..     ....++.+...|+...... .++||+|++
T Consensus        44 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~~D~i~~  118 (224)
T TIGR01983        44 LFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKK-----DPLLKIEYRCTSVEDLAEKGAKSFDVVTC  118 (224)
T ss_pred             CCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHH-----cCCCceEEEeCCHHHhhcCCCCCccEEEe
Confidence            3578999999999999999998888999999999999999998876     2333688888887654332 368999999


Q ss_pred             cchhhh------HHHHHHHhccCCcEEEEEecCC
Q psy7837         209 SQAIRD------IPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       209 ~~~~~~------~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ...+++      +.+.+.+.|++||.+++.....
T Consensus       119 ~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~  152 (224)
T TIGR01983       119 MEVLEHVPDPQAFIRACAQLLKPGGILFFSTINR  152 (224)
T ss_pred             hhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence            877654      4468899999999999876543

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.20  E-value=1.1e-10  Score=114.36  Aligned_cols=104  Identities=18%  Similarity=0.237  Sum_probs=83.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCC-CCeEEEEcCCCCCCC-CCCCeeEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALA-ENFEFVCADGRRGYP-DAAPYDVI  206 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~-~~~~fD~v  206 (299)
                      .++++|||+|||+|.+++.+++.|+ .|+++|+|+.+++.+++|++.|    +.. .+++++++|+..... ...+||+|
T Consensus       537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~n----g~~~~~v~~i~~D~~~~l~~~~~~fDlI  612 (702)
T PRK11783        537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALN----GLSGRQHRLIQADCLAWLKEAREQFDLI  612 (702)
T ss_pred             cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh----CCCccceEEEEccHHHHHHHcCCCcCEE
Confidence            4588999999999999999999887 4999999999999999999885    222 479999999865321 13579999


Q ss_pred             Eecchh-----------------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         207 YISQAI-----------------RDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       207 ~~~~~~-----------------~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      +++++.                 ..+...+.++|+|||.+++.+....
T Consensus       613 ilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~  660 (702)
T PRK11783        613 FIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG  660 (702)
T ss_pred             EECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence            999863                 1234567889999999988776543

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=3.5e-10  Score=98.72  Aligned_cols=97  Identities=25%  Similarity=0.288  Sum_probs=79.6

Q ss_pred             eEEEEcCCCcHHHHHHHHcCC--eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecch
Q psy7837         134 KVLDIGSGSGYLSALFAYMGA--KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQA  211 (299)
Q Consensus       134 ~vLDiG~G~G~~~~~la~~~~--~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~  211 (299)
                      +|||+|||||..++.++..+.  +|+++|+|+.+++.|++|++.+     +..++.++.+|......  ++||+|++|++
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~-----~l~~~~~~~~dlf~~~~--~~fDlIVsNPP  185 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERN-----GLVRVLVVQSDLFEPLR--GKFDLIVSNPP  185 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHc-----CCccEEEEeeecccccC--CceeEEEeCCC
Confidence            799999999999999998864  8999999999999999999984     33677777777665444  37999999987


Q ss_pred             hh-------------------------------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837         212 IR-------------------------------DIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       212 ~~-------------------------------~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      .-                               .+..++.+.|++||.+++..+...
T Consensus       186 Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q  242 (280)
T COG2890         186 YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ  242 (280)
T ss_pred             CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc
Confidence            41                               222467889999999999987544

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.20  E-value=3.1e-10  Score=107.02  Aligned_cols=103  Identities=17%  Similarity=0.217  Sum_probs=74.5

Q ss_pred             CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHH
Q psy7837          67 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLS  146 (299)
Q Consensus        67 ~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~  146 (299)
                      ++.+|||+|||+|.++..++.... ..+++++|+++.+++.+++++...                               
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~-------------------------------  185 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKY-------------------------------  185 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHc-------------------------------
Confidence            356899999999999998887653 356777777777777777766541                               


Q ss_pred             HHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhh-------------
Q psy7837         147 ALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIR-------------  213 (299)
Q Consensus       147 ~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~-------------  213 (299)
                                                        ....++.++.+|...... .++||+|+++++..             
T Consensus       186 ----------------------------------~l~~~v~~~~~D~~~~~~-~~~fDlIvsNPPYi~~~~~~~l~~~v~  230 (506)
T PRK01544        186 ----------------------------------EVTDRIQIIHSNWFENIE-KQKFDFIVSNPPYISHSEKSEMAIETI  230 (506)
T ss_pred             ----------------------------------CCccceeeeecchhhhCc-CCCccEEEECCCCCCchhhhhcCchhh
Confidence                                              233578899999765432 35799999987531             


Q ss_pred             -------------------hHHHHHHHhccCCcEEEEEecCC
Q psy7837         214 -------------------DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       214 -------------------~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                                         .+.+.+.+.|+|||.+++.++..
T Consensus       231 ~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~  272 (506)
T PRK01544        231 NYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK  272 (506)
T ss_pred             ccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc
Confidence                               12245678999999999977543

>KOG1271|consensus

Probab=99.18  E-value=2.5e-10  Score=90.31  Aligned_cols=101  Identities=18%  Similarity=0.224  Sum_probs=81.5

Q ss_pred             eEEEEcCCCcHHHHHHHHcCCe--EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecch
Q psy7837         134 KVLDIGSGSGYLSALFAYMGAK--VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQA  211 (299)
Q Consensus       134 ~vLDiG~G~G~~~~~la~~~~~--v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~  211 (299)
                      +|||+|||.|.+...+++.|.+  .+++|.|+.+++.|+..+++.    .....++|.+.|+.++-...+.||+|.--+.
T Consensus        70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~----~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT  145 (227)
T KOG1271|consen   70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERD----GFSNEIRFQQLDITDPDFLSGQFDLVLDKGT  145 (227)
T ss_pred             ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhc----CCCcceeEEEeeccCCcccccceeEEeecCc
Confidence            9999999999999999998754  999999999999999988884    3344499999999986555578998875554


Q ss_pred             hhhH--------------HHHHHHhccCCcEEEEEecCCCC
Q psy7837         212 IRDI--------------PWHIVDQLKLGGRMLFIKGHEDD  238 (299)
Q Consensus       212 ~~~~--------------~~~~~~~L~~gG~lv~~~~~~~~  238 (299)
                      +..+              .+.+.++|+|||+++|..-+...
T Consensus       146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~  186 (227)
T KOG1271|consen  146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTK  186 (227)
T ss_pred             eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccH
Confidence            4321              24788999999999998776653

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.17  E-value=8.2e-11  Score=106.61  Aligned_cols=129  Identities=14%  Similarity=0.061  Sum_probs=100.1

Q ss_pred             CeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC---C----------
Q psy7837         133 SKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP---D----------  199 (299)
Q Consensus       133 ~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~----------  199 (299)
                      .+|||++||+|.+++.+++....|+++|.++.+++.+++|++.     ....+++++.+|+.....   .          
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~-----~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~  282 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAA-----NGIDNVQIIRMSAEEFTQAMNGVREFNRLKGI  282 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHH-----hCCCcEEEEECCHHHHHHHHhhcccccccccc
Confidence            5799999999999999998888899999999999999999988     355689999999864221   0          


Q ss_pred             ---CCCeeEEEecchhhhHHHHH-HHhccCCcEEEEEecCCCCcceeeeEEeecCCceEEEEecceeccccccccc
Q psy7837         200 ---AAPYDVIYISQAIRDIPWHI-VDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLE  271 (299)
Q Consensus       200 ---~~~fD~v~~~~~~~~~~~~~-~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (299)
                         ...||+|+++++-..+.+++ ..+.++++++++++.+......+..+.   . ++..+.+.++.++ |.+.--
T Consensus       283 ~~~~~~~D~v~lDPPR~G~~~~~l~~l~~~~~ivyvSC~p~tlarDl~~L~---~-gY~l~~v~~~DmF-PqT~Hv  353 (362)
T PRK05031        283 DLKSYNFSTIFVDPPRAGLDDETLKLVQAYERILYISCNPETLCENLETLS---Q-THKVERFALFDQF-PYTHHM  353 (362)
T ss_pred             cccCCCCCEEEECCCCCCCcHHHHHHHHccCCEEEEEeCHHHHHHHHHHHc---C-CcEEEEEEEcccC-CCCCcE
Confidence               12589999999976555544 444467999999998865444444443   2 4888999999998 776543

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.16  E-value=6e-10  Score=94.12  Aligned_cols=100  Identities=27%  Similarity=0.390  Sum_probs=80.9

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcC---CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMG---AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      ..++.+|||+|||+|.++..+++..   .+++++|+++.+++.++++..       ...++.++.+|+.......++||+
T Consensus        37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-------~~~~i~~~~~d~~~~~~~~~~~D~  109 (223)
T TIGR01934        37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-------LPLNIEFIQADAEALPFEDNSFDA  109 (223)
T ss_pred             cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-------cCCCceEEecchhcCCCCCCcEEE
Confidence            3478999999999999999998774   379999999999999988753       234788999998865544578999


Q ss_pred             EEecchhh------hHHHHHHHhccCCcEEEEEecC
Q psy7837         206 IYISQAIR------DIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       206 v~~~~~~~------~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      |++...++      .+.+++.++|+|||++++....
T Consensus       110 i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  145 (223)
T TIGR01934       110 VTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS  145 (223)
T ss_pred             EEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence            99877654      3456889999999999986543

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.16  E-value=4.3e-10  Score=99.53  Aligned_cols=83  Identities=23%  Similarity=0.268  Sum_probs=66.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQ  210 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~  210 (299)
                      ++.+|||+|||+|.++..+++.|.+|+++|+|+.|++.++++++..........++.|..+|....   .++||+|++..
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~  220 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLD  220 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcC
Confidence            578999999999999999999999999999999999999998865200001234678888887542   36799999988


Q ss_pred             hhhhHH
Q psy7837         211 AIRDIP  216 (299)
Q Consensus       211 ~~~~~~  216 (299)
                      ++.+++
T Consensus       221 vL~H~p  226 (315)
T PLN02585        221 VLIHYP  226 (315)
T ss_pred             EEEecC
Confidence            876654

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.16  E-value=9.3e-11  Score=105.84  Aligned_cols=128  Identities=14%  Similarity=0.056  Sum_probs=99.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC-------------
Q psy7837         133 SKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD-------------  199 (299)
Q Consensus       133 ~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-------------  199 (299)
                      .+|||++||+|.+++.+++....|+++|.++++++.+++|++.     ....+++++.+|+......             
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~-----~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~  273 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAA-----NNIDNVQIIRMSAEEFTQAMNGVREFRRLKGI  273 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHH-----cCCCcEEEEEcCHHHHHHHHhhcccccccccc
Confidence            4799999999999999998888999999999999999999988     4556899999998742211             


Q ss_pred             ---CCCeeEEEecchhhhHHHHH-HHhccCCcEEEEEecCCCCcceeeeEEeecCCceEEEEecceecccccccc
Q psy7837         200 ---AAPYDVIYISQAIRDIPWHI-VDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSL  270 (299)
Q Consensus       200 ---~~~fD~v~~~~~~~~~~~~~-~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (299)
                         ...||+|+++++-..+.+.+ ..+.++++++++++.+......+..+.   ++ ++...+.++.++ |.+.-
T Consensus       274 ~~~~~~~d~v~lDPPR~G~~~~~l~~l~~~~~ivYvsC~p~tlaRDl~~L~---~~-Y~l~~v~~~DmF-P~T~H  343 (353)
T TIGR02143       274 DLKSYNCSTIFVDPPRAGLDPDTCKLVQAYERILYISCNPETLKANLEQLS---ET-HRVERFALFDQF-PYTHH  343 (353)
T ss_pred             ccccCCCCEEEECCCCCCCcHHHHHHHHcCCcEEEEEcCHHHHHHHHHHHh---cC-cEEEEEEEcccC-CCCCc
Confidence               12389999999865544433 445568999999998876555555443   23 888888899888 77754

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=1.1e-10  Score=107.31  Aligned_cols=145  Identities=19%  Similarity=0.160  Sum_probs=112.1

Q ss_pred             HHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC
Q psy7837         116 AETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR  195 (299)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  195 (299)
                      ++++++.+.......++.++||+.||.|.+++.+|+...+|+|+|+++.+++.|++|++.     ++..|++|+.+++..
T Consensus       278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~-----n~i~N~~f~~~~ae~  352 (432)
T COG2265         278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAA-----NGIDNVEFIAGDAEE  352 (432)
T ss_pred             HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHH-----cCCCcEEEEeCCHHH
Confidence            445666666666778889999999999999999999999999999999999999999999     577789999999885


Q ss_pred             CCCC---CCCeeEEEecchhhhHHH---HHHHhccCCcEEEEEecCCCCcceeeeEEeecCCceEEEEecceeccccccc
Q psy7837         196 GYPD---AAPYDVIYISQAIRDIPW---HIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKS  269 (299)
Q Consensus       196 ~~~~---~~~fD~v~~~~~~~~~~~---~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (299)
                      ....   ...+|.|+.+++-..+.+   +....++|..++++++++......+..+..   .++....+..+.++ |.+.
T Consensus       353 ~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP~TlaRDl~~L~~---~gy~i~~v~~~DmF-P~T~  428 (432)
T COG2265         353 FTPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLKPKRIVYVSCNPATLARDLAILAS---TGYEIERVQPFDMF-PHTH  428 (432)
T ss_pred             HhhhccccCCCCEEEECCCCCCCCHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHh---CCeEEEEEEEeccC-CCcc
Confidence            4332   247899999998765553   334456788999999988765554444444   44556666667666 5543

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.15  E-value=9.1e-10  Score=97.84  Aligned_cols=105  Identities=16%  Similarity=0.180  Sum_probs=82.9

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCC
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDA  200 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  200 (299)
                      +.....+.++.+|||+|||+|.++..+++.  +.+++++|. +.+++.++++++..    +...+++++.+|+.....+ 
T Consensus       141 l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~----gl~~rv~~~~~d~~~~~~~-  214 (306)
T TIGR02716       141 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK----GVADRMRGIAVDIYKESYP-  214 (306)
T ss_pred             HHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhC----CccceEEEEecCccCCCCC-
Confidence            333445677889999999999999999887  467999997 78999999998773    3456899999998753332 


Q ss_pred             CCeeEEEecchhhh--------HHHHHHHhccCCcEEEEEec
Q psy7837         201 APYDVIYISQAIRD--------IPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       201 ~~fD~v~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~  234 (299)
                       .+|+|++...++.        +.+++.+.|+|||++++...
T Consensus       215 -~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~  255 (306)
T TIGR02716       215 -EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM  255 (306)
T ss_pred             -CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence             3699988776542        44688999999999999864

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.14  E-value=1.4e-09  Score=95.49  Aligned_cols=107  Identities=21%  Similarity=0.204  Sum_probs=90.3

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEc-CCCCCCCCCC
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA-DGRRGYPDAA  201 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~  201 (299)
                      +-.++..++|..|||--||||.+.+.+...|+.++|+|++..|++-++.|++.     .......+... |+...+...+
T Consensus       189 mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~-----y~i~~~~~~~~~Da~~lpl~~~  263 (347)
T COG1041         189 MVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEY-----YGIEDYPVLKVLDATNLPLRDN  263 (347)
T ss_pred             HHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhh-----hCcCceeEEEecccccCCCCCC
Confidence            44455678999999999999999999999999999999999999999999998     34556655555 8887666666


Q ss_pred             CeeEEEecchh---------------hhHHHHHHHhccCCcEEEEEec
Q psy7837         202 PYDVIYISQAI---------------RDIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       202 ~fD~v~~~~~~---------------~~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      ++|.|+++++.               ....+.+.++|++||++++..+
T Consensus       264 ~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         264 SVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             ccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence            79999999874               2344688999999999999987

>PRK04457 spermidine synthase; Provisional

Probab=99.14  E-value=4.7e-10  Score=97.16  Aligned_cols=103  Identities=19%  Similarity=0.168  Sum_probs=81.0

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCeeEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYDVI  206 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v  206 (299)
                      .++.+|||||||+|.++..+++.  +.+++++|+++.+++.+++++...    ....+++++.+|+..... ..++||+|
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~----~~~~rv~v~~~Da~~~l~~~~~~yD~I  140 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELP----ENGERFEVIEADGAEYIAVHRHSTDVI  140 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCC----CCCCceEEEECCHHHHHHhCCCCCCEE
Confidence            45689999999999999988776  568999999999999999987652    234689999999865322 12579999


Q ss_pred             Eecchh----------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         207 YISQAI----------RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       207 ~~~~~~----------~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +++..-          ..+.+.+.+.|+|||++++.....
T Consensus       141 ~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~  180 (262)
T PRK04457        141 LVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR  180 (262)
T ss_pred             EEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence            987421          345678999999999999975543

>KOG1541|consensus

Probab=99.13  E-value=9e-11  Score=95.60  Aligned_cols=123  Identities=18%  Similarity=0.204  Sum_probs=94.9

Q ss_pred             EEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHH
Q psy7837          95 VYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIR  174 (299)
Q Consensus        95 v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~  174 (299)
                      .-.++|..+|.+++.+.+..             .-....-+||||||+|..+..+...|...+++|+|+.|++.|.+.  
T Consensus        27 sri~~IQ~em~eRaLELLal-------------p~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~--   91 (270)
T KOG1541|consen   27 SRIVLIQAEMAERALELLAL-------------PGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVER--   91 (270)
T ss_pred             ceeeeehHHHHHHHHHHhhC-------------CCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHh--
Confidence            44567778888888877754             111356799999999999999999999999999999999999863  


Q ss_pred             hcCCcccCCCCeEEEEcCCCCCC-CCCCCeeEEEecchhhhHH-----------------HHHHHhccCCcEEEEEecCC
Q psy7837         175 RGAPAIALAENFEFVCADGRRGY-PDAAPYDVIYISQAIRDIP-----------------WHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       175 ~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~~~~~~-----------------~~~~~~L~~gG~lv~~~~~~  236 (299)
                      .      .  .-.++.+|+-.+. +..+.||-+|+...+.|+-                 ..++..|++|++.|+...+.
T Consensus        92 e------~--egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe  163 (270)
T KOG1541|consen   92 E------L--EGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE  163 (270)
T ss_pred             h------h--hcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence            1      1  1357788877643 4568999999877664332                 35889999999999999887


Q ss_pred             CCcc
Q psy7837         237 DDIM  240 (299)
Q Consensus       237 ~~~~  240 (299)
                      +..+
T Consensus       164 n~~q  167 (270)
T KOG1541|consen  164 NEAQ  167 (270)
T ss_pred             chHH
Confidence            7665

>KOG2899|consensus

Probab=99.12  E-value=6.9e-11  Score=97.58  Aligned_cols=186  Identities=18%  Similarity=0.201  Sum_probs=110.2

Q ss_pred             HHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEE
Q psy7837          57 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVL  136 (299)
Q Consensus        57 ~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vL  136 (299)
                      -+..|.+.+-.+..+|||||.+|.+|..+++.+++ -.+.|+||++.+++.|++.++...       ... ...++.-+.
T Consensus        48 rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~~-------~~~-~~~~~~~~~  118 (288)
T KOG2899|consen   48 RLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRFPC-------DHE-TEVSGKFPA  118 (288)
T ss_pred             hhhhccccccCcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccccc-------ccc-ccccCCCcc
Confidence            34455666778889999999999999999999986 569999999999999999987631       111 111122233


Q ss_pred             EEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhh--
Q psy7837         137 DIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIR--  213 (299)
Q Consensus       137 DiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~--  213 (299)
                      ..+.-.|.++.   +.-+ .....|...+..              ....|..+...|..  ......||+|+|-....  
T Consensus       119 ~~~~~~~~is~---~~~a~~a~t~~~p~n~~--------------f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWI  179 (288)
T KOG2899|consen  119 SFGVQFGPISQ---RNEADRAFTTDFPDNVW--------------FQKENYVLESDDFL--DMIQPEFDIILCLSITKWI  179 (288)
T ss_pred             ccccccccccc---cccccccccccCCcchh--------------cccccEEEecchhh--hhccccccEEEEEEeeeeE
Confidence            33333333322   1111 111112111100              11234444444433  22336799999866543  


Q ss_pred             ----------hHHHHHHHhccCCcEEEEEecCCCCcceeeeEEeecCCceEEEEecceecccccccc
Q psy7837         214 ----------DIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSL  270 (299)
Q Consensus       214 ----------~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (299)
                                .+..++.++|.|||+|++.-.++.......+..+..........+.+-.|.+.+.+.
T Consensus       180 HLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWksY~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~  246 (288)
T KOG2899|consen  180 HLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKSYKKAARRSEKLAANYFKIFLKPEDFEDWLNQI  246 (288)
T ss_pred             ecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHHHHHHHHHHHHhhcCccceecCHHHHHhhhhhh
Confidence                      345689999999999999877776554444443334455555556555555333333

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.11  E-value=1.4e-09  Score=79.44  Aligned_cols=94  Identities=28%  Similarity=0.367  Sum_probs=76.8

Q ss_pred             eEEEEcCCCcHHHHHHHH-cCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCeeEEEecch
Q psy7837         134 KVLDIGSGSGYLSALFAY-MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYDVIYISQA  211 (299)
Q Consensus       134 ~vLDiG~G~G~~~~~la~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~  211 (299)
                      +++|+|||+|.++..+++ .+.+++++|.++..+..+++....     ....++.+...|...... ...+||+|+++.+
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~   75 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAA-----LLADNVEVLKGDAEELPPEADESFDVIISDPP   75 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhc-----ccccceEEEEcChhhhccccCCceEEEEEccc
Confidence            489999999999999987 567899999999999998865444     355789999999886543 3467999999988


Q ss_pred             hhh-------HHHHHHHhccCCcEEEEE
Q psy7837         212 IRD-------IPWHIVDQLKLGGRMLFI  232 (299)
Q Consensus       212 ~~~-------~~~~~~~~L~~gG~lv~~  232 (299)
                      +..       +.+.+.+.|++||.+++.
T Consensus        76 ~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          76 LHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             eeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            743       346788899999999887

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=7.8e-10  Score=88.52  Aligned_cols=76  Identities=29%  Similarity=0.395  Sum_probs=67.4

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI  206 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  206 (299)
                      ....|++|+|+|||||.+++..+-+|+ +|+++|+++++++.+++|...      ...++.|+.+|+.+..   .++|.+
T Consensus        42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~------l~g~v~f~~~dv~~~~---~~~dtv  112 (198)
T COG2263          42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE------LLGDVEFVVADVSDFR---GKFDTV  112 (198)
T ss_pred             CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh------hCCceEEEEcchhhcC---CccceE
Confidence            445688999999999999999999996 599999999999999999887      5678999999998754   558999


Q ss_pred             Eecchh
Q psy7837         207 YISQAI  212 (299)
Q Consensus       207 ~~~~~~  212 (299)
                      ++|+++
T Consensus       113 imNPPF  118 (198)
T COG2263         113 IMNPPF  118 (198)
T ss_pred             EECCCC
Confidence            999987

>PRK00811 spermidine synthase; Provisional

Probab=99.11  E-value=6.6e-10  Score=97.39  Aligned_cols=106  Identities=20%  Similarity=0.174  Sum_probs=81.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc-C-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCeeEEE
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM-G-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYDVIY  207 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~-~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~  207 (299)
                      .+++||++|||+|..+..+++. + .+|+++|+++.+++.+++.+...........+++++.+|+..... ..++||+|+
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  155 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII  155 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence            4679999999999999999887 4 579999999999999999886421110125689999999875332 246899999


Q ss_pred             ecchh----------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         208 ISQAI----------RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       208 ~~~~~----------~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ++..-          ..+.+.+.+.|+|||++++.....
T Consensus       156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~  194 (283)
T PRK00811        156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSP  194 (283)
T ss_pred             ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence            98532          234467899999999999876543

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.10  E-value=1.2e-09  Score=93.01  Aligned_cols=79  Identities=27%  Similarity=0.328  Sum_probs=65.7

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      ..++.+|||+|||+|.++..+++.+..|+++|+++.+++.+++++...    ....++.+..+|...   ..++||+|++
T Consensus        61 ~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~----~~~~~i~~~~~d~~~---~~~~fD~v~~  133 (230)
T PRK07580         61 DLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEA----GLAGNITFEVGDLES---LLGRFDTVVC  133 (230)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc----CCccCcEEEEcCchh---ccCCcCEEEE
Confidence            356789999999999999999999999999999999999999988762    222588999999432   2367999999


Q ss_pred             cchhhh
Q psy7837         209 SQAIRD  214 (299)
Q Consensus       209 ~~~~~~  214 (299)
                      ..++++
T Consensus       134 ~~~l~~  139 (230)
T PRK07580        134 LDVLIH  139 (230)
T ss_pred             cchhhc
Confidence            888754

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.10  E-value=8e-10  Score=99.76  Aligned_cols=105  Identities=20%  Similarity=0.216  Sum_probs=87.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC----CCCCeeE
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP----DAAPYDV  205 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fD~  205 (299)
                      .|++||++.|=||.++..++..|+ +|+++|.|...++.+++|++.|+   ....+..++++|+...+.    ...+||+
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg---~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl  293 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNG---LDGDRHRFIVGDVFKWLRKAERRGEKFDL  293 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcC---CCccceeeehhhHHHHHHHHHhcCCcccE
Confidence            399999999999999999999999 79999999999999999999863   234678999999885332    2358999


Q ss_pred             EEecchh---------------hhHHHHHHHhccCCcEEEEEecCCCC
Q psy7837         206 IYISQAI---------------RDIPWHIVDQLKLGGRMLFIKGHEDD  238 (299)
Q Consensus       206 v~~~~~~---------------~~~~~~~~~~L~~gG~lv~~~~~~~~  238 (299)
                      |+++++.               ..+...+.++|+|||.++++......
T Consensus       294 IilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~  341 (393)
T COG1092         294 IILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHF  341 (393)
T ss_pred             EEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCcc
Confidence            9999973               23456889999999999998876543

>PRK06202 hypothetical protein; Provisional

Probab=99.10  E-value=8.9e-10  Score=93.99  Aligned_cols=94  Identities=22%  Similarity=0.205  Sum_probs=69.0

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc----C--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCe
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM----G--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPY  203 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~----~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  203 (299)
                      .++.+|||+|||+|.++..+++.    |  .+|+++|+++.+++.++++...        .++.+...+........++|
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~--------~~~~~~~~~~~~l~~~~~~f  130 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR--------PGVTFRQAVSDELVAEGERF  130 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc--------CCCeEEEEecccccccCCCc
Confidence            56789999999999999888752    3  5899999999999999887533        34566666554433345789


Q ss_pred             eEEEecchhhhHH--------HHHHHhccCCcEEEEEe
Q psy7837         204 DVIYISQAIRDIP--------WHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       204 D~v~~~~~~~~~~--------~~~~~~L~~gG~lv~~~  233 (299)
                      |+|+++.+++++.        +++.++++  |.+++..
T Consensus       131 D~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~d  166 (232)
T PRK06202        131 DVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHND  166 (232)
T ss_pred             cEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEec
Confidence            9999999887654        35666666  4444443

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.08  E-value=1.6e-09  Score=90.94  Aligned_cols=104  Identities=16%  Similarity=0.099  Sum_probs=81.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHh-------cCCcccCCCCeEEEEcCCCCCCC---CC
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRR-------GAPAIALAENFEFVCADGRRGYP---DA  200 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~-------~~~~~~~~~~v~~~~~d~~~~~~---~~  200 (299)
                      ++.+||+.|||.|.-...|+++|.+|+|+|+|+..++.+.+....       +........++++.++|+.....   ..
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~  122 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL  122 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence            468999999999999999999999999999999999998663210       00000123589999999987542   12


Q ss_pred             CCeeEEEecchhhhHH--------HHHHHhccCCcEEEEEec
Q psy7837         201 APYDVIYISQAIRDIP--------WHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       201 ~~fD~v~~~~~~~~~~--------~~~~~~L~~gG~lv~~~~  234 (299)
                      +.||.|+-.+.+.+++        +.+.++|+|||.+++.+.
T Consensus       123 ~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~  164 (226)
T PRK13256        123 PVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM  164 (226)
T ss_pred             CCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence            6799999888876655        478899999999988765

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.07  E-value=1.7e-09  Score=89.24  Aligned_cols=41  Identities=29%  Similarity=0.454  Sum_probs=35.3

Q ss_pred             cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHH
Q psy7837          64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPEL  104 (299)
Q Consensus        64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~  104 (299)
                      .+++|++|||+|||+|.++..+++.....++++++|+++.+
T Consensus        29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~   69 (188)
T TIGR00438        29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK   69 (188)
T ss_pred             ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc
Confidence            46899999999999999999999887667789999988743

>TIGR03438 probable methyltransferase

Probab=99.05  E-value=4e-09  Score=93.35  Aligned_cols=117  Identities=17%  Similarity=0.158  Sum_probs=79.1

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCe
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSK  134 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  134 (299)
                      ....+.+.+.+.++.+|||+|||+|..+..+.+.+....+++++|+++.|++.+++.+...                   
T Consensus        51 ~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~-------------------  111 (301)
T TIGR03438        51 ERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD-------------------  111 (301)
T ss_pred             HHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh-------------------
Confidence            3334444445678889999999999999999887643456888888888887777776541                   


Q ss_pred             EEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCC---CCeeEEEec
Q psy7837         135 VLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDA---APYDVIYIS  209 (299)
Q Consensus       135 vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~---~~fD~v~~~  209 (299)
                                                                    ....++.++++|+.+..  ...   ....+++++
T Consensus       112 ----------------------------------------------~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~g  145 (301)
T TIGR03438       112 ----------------------------------------------YPQLEVHGICADFTQPLALPPEPAAGRRLGFFPG  145 (301)
T ss_pred             ----------------------------------------------CCCceEEEEEEcccchhhhhcccccCCeEEEEec
Confidence                                                          12346778899987532  211   123344444


Q ss_pred             chhh--------hHHHHHHHhccCCcEEEEEecCC
Q psy7837         210 QAIR--------DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       210 ~~~~--------~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ..+.        .+.+++.+.|+|||.+++.....
T Consensus       146 s~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~  180 (301)
T TIGR03438       146 STIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV  180 (301)
T ss_pred             ccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence            4432        34568899999999999876543

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.04  E-value=8.3e-09  Score=84.99  Aligned_cols=102  Identities=19%  Similarity=0.150  Sum_probs=78.5

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---C-CCCCee
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---P-DAAPYD  204 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~-~~~~fD  204 (299)
                      ..+.+|||++||+|.+++.++++|+ .|+++|.++.+++.+++|++.+    ....+++++.+|+....   . ....||
T Consensus        48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~----~~~~~~~~~~~D~~~~l~~~~~~~~~~d  123 (189)
T TIGR00095        48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALL----KSGEQAEVVRNSALRALKFLAKKPTFDN  123 (189)
T ss_pred             cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHh----CCcccEEEEehhHHHHHHHhhccCCCce
Confidence            4688999999999999999999987 6999999999999999999884    23347899999985421   1 122489


Q ss_pred             EEEecchhhh-----HHHHH--HHhccCCcEEEEEecC
Q psy7837         205 VIYISQAIRD-----IPWHI--VDQLKLGGRMLFIKGH  235 (299)
Q Consensus       205 ~v~~~~~~~~-----~~~~~--~~~L~~gG~lv~~~~~  235 (299)
                      +|+.++++..     +.+.+  ..+|+++|.+++....
T Consensus       124 vv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       124 VIYLDPPFFNGALQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             EEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            9999998742     22222  2368889988887654

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.02  E-value=3.3e-09  Score=87.60  Aligned_cols=126  Identities=19%  Similarity=0.240  Sum_probs=87.6

Q ss_pred             CCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHH--cCCeEEEEeCChHHHHH
Q psy7837          91 ISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAY--MGAKVYAIEHVKNLCKR  168 (299)
Q Consensus        91 ~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~--~~~~v~~~D~~~~~~~~  168 (299)
                      +.|..+-+|....+.......-+         .+......++..|+|+.||.|.+++.+++  .+..|+++|++|..++.
T Consensus        70 E~G~~f~~D~~kvyfs~rl~~Er---------~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~  140 (200)
T PF02475_consen   70 ENGIRFKVDLSKVYFSPRLSTER---------RRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEY  140 (200)
T ss_dssp             ETTEEEEEETTTS---GGGHHHH---------HHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHH
T ss_pred             eCCEEEEEccceEEEccccHHHH---------HHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHH
Confidence            36789999988777543211111         12222467899999999999999999998  57789999999999999


Q ss_pred             HHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchh--hhHHHHHHHhccCCcEEE
Q psy7837         169 AMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAI--RDIPWHIVDQLKLGGRML  230 (299)
Q Consensus       169 a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~--~~~~~~~~~~L~~gG~lv  230 (299)
                      +++|++.|    ....++..+.+|...... ...||.|+++.+-  ..+.+.+.+++++||++.
T Consensus       141 L~~Ni~lN----kv~~~i~~~~~D~~~~~~-~~~~drvim~lp~~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  141 LKENIRLN----KVENRIEVINGDAREFLP-EGKFDRVIMNLPESSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             HHHHHHHT----T-TTTEEEEES-GGG----TT-EEEEEE--TSSGGGGHHHHHHHEEEEEEEE
T ss_pred             HHHHHHHc----CCCCeEEEEcCCHHHhcC-ccccCEEEECChHHHHHHHHHHHHHhcCCcEEE
Confidence            99999996    556778999999987655 5789999998874  356788999999999875

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>TIGR00417 speE spermidine synthase

Probab=99.00  E-value=4.3e-09  Score=91.72  Aligned_cols=105  Identities=15%  Similarity=0.116  Sum_probs=78.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCeeEEE
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYDVIY  207 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~  207 (299)
                      .+++||++|||+|.++..+.+..  .+++++|+++++++.+++.+...+.. ....+++++.+|+..... ..++||+|+
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~-~~~~~v~i~~~D~~~~l~~~~~~yDvIi  150 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGS-YDDPRVDLQIDDGFKFLADTENTFDVII  150 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhccc-ccCCceEEEECchHHHHHhCCCCccEEE
Confidence            34599999999999999888774  57999999999999999987542100 123578888888764221 136799999


Q ss_pred             ecchh----------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         208 ISQAI----------RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       208 ~~~~~----------~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ++...          ....+.+.+.|+|||.+++....+
T Consensus       151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~  189 (270)
T TIGR00417       151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESP  189 (270)
T ss_pred             EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCc
Confidence            97752          234468899999999999985543

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.00  E-value=2.6e-09  Score=88.53  Aligned_cols=95  Identities=22%  Similarity=0.287  Sum_probs=72.4

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCCCCeeEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDAAPYDVI  206 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v  206 (299)
                      .++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++            +++++++|+....  ...++||+|
T Consensus        12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~------------~~~~~~~d~~~~l~~~~~~sfD~V   79 (194)
T TIGR02081        12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR------------GVNVIQGDLDEGLEAFPDKSFDYV   79 (194)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc------------CCeEEEEEhhhcccccCCCCcCEE
Confidence            46789999999999999988765 56799999999999887542            4678888876522  334789999


Q ss_pred             EecchhhhHH---HHHHHhccCCcEEEEEecCC
Q psy7837         207 YISQAIRDIP---WHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       207 ~~~~~~~~~~---~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +++.+++++.   ..+.+++++++.+++.+++.
T Consensus        80 i~~~~l~~~~d~~~~l~e~~r~~~~~ii~~p~~  112 (194)
T TIGR02081        80 ILSQTLQATRNPEEILDEMLRVGRHAIVSFPNF  112 (194)
T ss_pred             EEhhHhHcCcCHHHHHHHHHHhCCeEEEEcCCh
Confidence            9999987664   34555666777777776553

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.99  E-value=7.9e-10  Score=99.78  Aligned_cols=142  Identities=18%  Similarity=0.205  Sum_probs=92.6

Q ss_pred             HHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC
Q psy7837         118 TYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY  197 (299)
Q Consensus       118 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  197 (299)
                      ++++.+..+....++ .+||+.||.|.+++.+++...+|+|+|.++.+++.|++|++.     +...|++|+.+++.+..
T Consensus       184 ~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~-----N~i~n~~f~~~~~~~~~  257 (352)
T PF05958_consen  184 KLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKL-----NGIDNVEFIRGDAEDFA  257 (352)
T ss_dssp             HHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHH-----TT--SEEEEE--SHHCC
T ss_pred             HHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHH-----cCCCcceEEEeeccchh
Confidence            444444445555555 899999999999999999999999999999999999999999     57789999988764321


Q ss_pred             C----------------CCCCeeEEEecchhhhHHHHHHHhc-cCCcEEEEEecCCCCcceeeeEEeecCCceEEEEecc
Q psy7837         198 P----------------DAAPYDVIYISQAIRDIPWHIVDQL-KLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHP  260 (299)
Q Consensus       198 ~----------------~~~~fD~v~~~~~~~~~~~~~~~~L-~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (299)
                      .                ....+|+|+++++-..+.+.+.+.+ +..=++++++.+......+..+.   + +++...+.+
T Consensus       258 ~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~~~~ivYvSCnP~tlaRDl~~L~---~-~y~~~~v~~  333 (352)
T PF05958_consen  258 KALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIKKLKRIVYVSCNPATLARDLKILK---E-GYKLEKVQP  333 (352)
T ss_dssp             CHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHHHSSEEEEEES-HHHHHHHHHHHH---C-CEEEEEEEE
T ss_pred             HHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHhcCCeEEEEECCHHHHHHHHHHHh---h-cCEEEEEEE
Confidence            0                1125899999998654443322222 34568888887765444444443   2 488888989


Q ss_pred             eecccccccc
Q psy7837         261 HVYIHELKSL  270 (299)
Q Consensus       261 ~~~~~~~~~~  270 (299)
                      +.++ |.+.-
T Consensus       334 ~DmF-P~T~H  342 (352)
T PF05958_consen  334 VDMF-PQTHH  342 (352)
T ss_dssp             E-SS-TTSS-
T ss_pred             eecC-CCCCc
Confidence            9888 76653

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.97  E-value=1e-08  Score=95.34  Aligned_cols=106  Identities=17%  Similarity=0.223  Sum_probs=86.3

Q ss_pred             cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCc
Q psy7837          64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSG  143 (299)
Q Consensus        64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G  143 (299)
                      ..++|++|||++||+|.-|..+++.++.+|.+++.|+++.-+...++++.+                             
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r-----------------------------  160 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISR-----------------------------  160 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH-----------------------------
Confidence            478999999999999999999999998889999999999998888888877                             


Q ss_pred             HHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-CCCCCeeEEEecchhh---------
Q psy7837         144 YLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-PDAAPYDVIYISQAIR---------  213 (299)
Q Consensus       144 ~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~~~---------  213 (299)
                                                           .+..++.+...|..... .....||.|+++++..         
T Consensus       161 -------------------------------------~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p  203 (470)
T PRK11933        161 -------------------------------------CGVSNVALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDP  203 (470)
T ss_pred             -------------------------------------cCCCeEEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCH
Confidence                                                 35667888888876421 1125699999988742         


Q ss_pred             -------------------hHHHHHHHhccCCcEEEEEecC
Q psy7837         214 -------------------DIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       214 -------------------~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                                         .+.+.+.++|||||+|+.++-+
T Consensus       204 ~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT  244 (470)
T PRK11933        204 DALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT  244 (470)
T ss_pred             HHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence                               2334678899999999998765

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.96  E-value=3.2e-09  Score=89.24  Aligned_cols=104  Identities=26%  Similarity=0.357  Sum_probs=76.4

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHh--cCCc-----ccCCCCeEEEEcCCCCCCCCC-
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRR--GAPA-----IALAENFEFVCADGRRGYPDA-  200 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~--~~~~-----~~~~~~v~~~~~d~~~~~~~~-  200 (299)
                      ..++.+||..|||.|.-...++.+|.+|+|+|+|+.+++.+.+....  ....     .....++++.++|+....... 
T Consensus        35 ~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~  114 (218)
T PF05724_consen   35 LKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV  114 (218)
T ss_dssp             TSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred             CCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence            45678999999999999999999999999999999999998443211  0000     012347899999998744332 


Q ss_pred             CCeeEEEecchhhhHH--------HHHHHhccCCcEEEEE
Q psy7837         201 APYDVIYISQAIRDIP--------WHIVDQLKLGGRMLFI  232 (299)
Q Consensus       201 ~~fD~v~~~~~~~~~~--------~~~~~~L~~gG~lv~~  232 (299)
                      ++||+|+=...+..++        +.+.++|+|||.+++.
T Consensus       115 g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi  154 (218)
T PF05724_consen  115 GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI  154 (218)
T ss_dssp             HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred             CCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence            5799999888776555        4789999999994443

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.95  E-value=3.5e-09  Score=86.60  Aligned_cols=103  Identities=20%  Similarity=0.306  Sum_probs=76.2

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC----CCCCCee
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY----PDAAPYD  204 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD  204 (299)
                      .++.+|||+.||||.++++..++|+ .|+.+|.++..+...++|++..    ....++.++..|....+    ....+||
T Consensus        41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l----~~~~~~~v~~~d~~~~l~~~~~~~~~fD  116 (183)
T PF03602_consen   41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKL----GLEDKIRVIKGDAFKFLLKLAKKGEKFD  116 (183)
T ss_dssp             HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHH----T-GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred             cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHh----CCCcceeeeccCHHHHHHhhcccCCCce
Confidence            6799999999999999999999987 5999999999999999999883    23346899999976322    1347899


Q ss_pred             EEEecchhhh------HHHHHH--HhccCCcEEEEEecCC
Q psy7837         205 VIYISQAIRD------IPWHIV--DQLKLGGRMLFIKGHE  236 (299)
Q Consensus       205 ~v~~~~~~~~------~~~~~~--~~L~~gG~lv~~~~~~  236 (299)
                      +|+++++...      +.+.+.  .+|+++|.+++.....
T Consensus       117 iIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  117 IIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             EEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             EEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            9999998742      223444  6889999999988665

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK01581 speE spermidine synthase; Validated

Probab=98.94  E-value=1.4e-08  Score=90.38  Aligned_cols=107  Identities=15%  Similarity=0.131  Sum_probs=79.3

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHH--HHhcCCcccCCCCeEEEEcCCCCCCC-CCCCee
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKN--IRRGAPAIALAENFEFVCADGRRGYP-DAAPYD  204 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~--~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD  204 (299)
                      ...++||++|||+|.....+.+..  .+|+++|+++++++.|++.  +...+.......+++++.+|+..... ..++||
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD  228 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD  228 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence            446799999999999998888874  5799999999999999962  11100000235799999999886332 236799


Q ss_pred             EEEecchh-----------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         205 VIYISQAI-----------RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       205 ~v~~~~~~-----------~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +|+++..-           ..+.+.+.+.|+|||++++....+
T Consensus       229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp  271 (374)
T PRK01581        229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP  271 (374)
T ss_pred             EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh
Confidence            99998532           124468899999999998876544

>PLN02366 spermidine synthase

Probab=98.93  E-value=2.7e-08  Score=87.82  Aligned_cols=105  Identities=18%  Similarity=0.107  Sum_probs=80.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC--CCCCeeE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP--DAAPYDV  205 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD~  205 (299)
                      ...++||+||||.|.....+++..  .+|+.+|+++.+++.+++.+...+.. ....+++++.+|+.....  ..++||+
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~-~~dpRv~vi~~Da~~~l~~~~~~~yDv  168 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVG-FDDPRVNLHIGDGVEFLKNAPEGTYDA  168 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccc-cCCCceEEEEChHHHHHhhccCCCCCE
Confidence            447899999999999999998873  47999999999999999987542100 234689999999864322  2367999


Q ss_pred             EEecchhh----------hHHHHHHHhccCCcEEEEEecC
Q psy7837         206 IYISQAIR----------DIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       206 v~~~~~~~----------~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      |+++..-.          .+.+.+.+.|+|||+++....+
T Consensus       169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s  208 (308)
T PLN02366        169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAES  208 (308)
T ss_pred             EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCC
Confidence            99986431          3456889999999999886544

>KOG1499|consensus

Probab=98.93  E-value=6.4e-09  Score=90.94  Aligned_cols=108  Identities=26%  Similarity=0.251  Sum_probs=83.3

Q ss_pred             HHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC
Q psy7837         118 TYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG  196 (299)
Q Consensus       118 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  196 (299)
                      ++...+....++..++.|||+|||+|.+++..|+.|++ |+++|-|.-+ +.+++.+..|    .....++++++.+.+.
T Consensus        47 aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N----~~~~ii~vi~gkvEdi  121 (346)
T KOG1499|consen   47 AYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDN----GLEDVITVIKGKVEDI  121 (346)
T ss_pred             HHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhc----CccceEEEeecceEEE
Confidence            44556666777899999999999999999999999976 9999998776 8888888885    4556799999988864


Q ss_pred             CCCCCCeeEEEecchh-----hhHHH----HHHHhccCCcEEE
Q psy7837         197 YPDAAPYDVIYISQAI-----RDIPW----HIVDQLKLGGRML  230 (299)
Q Consensus       197 ~~~~~~fD~v~~~~~~-----~~~~~----~~~~~L~~gG~lv  230 (299)
                      ..+..+.|+|++--.=     +.+.+    .--+.|+|||.++
T Consensus       122 ~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  122 ELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             ecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence            3335789999874331     22222    3346899999765

>PHA03411 putative methyltransferase; Provisional

Probab=98.92  E-value=1.5e-08  Score=86.99  Aligned_cols=95  Identities=18%  Similarity=0.149  Sum_probs=72.9

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      ....+|||+|||+|.++..++.+  +.+|+++|+++.+++.+++++          .+++++++|+..... ..+||+|+
T Consensus        63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~----------~~v~~v~~D~~e~~~-~~kFDlII  131 (279)
T PHA03411         63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL----------PEAEWITSDVFEFES-NEKFDVVI  131 (279)
T ss_pred             ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----------cCCEEEECchhhhcc-cCCCcEEE
Confidence            34679999999999999988765  568999999999999998763          367899999886543 36799999


Q ss_pred             ecchhhhH--------------------------HHHHHHhccCCcEEEEEecC
Q psy7837         208 ISQAIRDI--------------------------PWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       208 ~~~~~~~~--------------------------~~~~~~~L~~gG~lv~~~~~  235 (299)
                      +++++.+.                          ......+|+|+|.+.+....
T Consensus       132 sNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss  185 (279)
T PHA03411        132 SNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSG  185 (279)
T ss_pred             EcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEec
Confidence            99886421                          12345678888877766443

>KOG3010|consensus

Probab=98.92  E-value=2e-09  Score=89.15  Aligned_cols=107  Identities=16%  Similarity=0.078  Sum_probs=75.1

Q ss_pred             HhhhcccCCCC-eEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCC
Q psy7837         123 INFYGHLVYGS-KVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAA  201 (299)
Q Consensus       123 ~~~~~~~~~~~-~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  201 (299)
                      ...+....++. .++|+|||+|..+..++..-.+|+++|+|+.|++.+++.....    ...........+.....-.++
T Consensus        24 ~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~----y~~t~~~ms~~~~v~L~g~e~   99 (261)
T KOG3010|consen   24 FKKIASRTEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVT----YCHTPSTMSSDEMVDLLGGEE   99 (261)
T ss_pred             HHHHHhhCCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcc----cccCCccccccccccccCCCc
Confidence            33344445554 8999999999888889999888999999999999998765331    111222222223333333358


Q ss_pred             CeeEEEecchhhhHH-----HHHHHhccCCcEEEEEe
Q psy7837         202 PYDVIYISQAIRDIP-----WHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       202 ~fD~v~~~~~~~~~~-----~~~~~~L~~gG~lv~~~  233 (299)
                      +.|+|++.-++|++.     +.+.++||+.|-++...
T Consensus       100 SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW  136 (261)
T KOG3010|consen  100 SVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAVW  136 (261)
T ss_pred             ceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEEE
Confidence            999999999988754     68999999887444443

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.92  E-value=2e-09  Score=93.52  Aligned_cols=105  Identities=21%  Similarity=0.237  Sum_probs=78.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC---CCCCeeE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP---DAAPYDV  205 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~  205 (299)
                      ..+++|||+.|=+|.+++..+..|+ +|+++|.|..+++.+++|++.|+   ....+++++..|+...+.   ..++||+
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg---~~~~~~~~~~~Dvf~~l~~~~~~~~fD~  198 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNG---LDLDRHRFIQGDVFKFLKRLKKGGRFDL  198 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT----CCTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred             cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCccceEEEecCHHHHHHHHhcCCCCCE
Confidence            4589999999999999999999987 59999999999999999999852   224689999999875321   2368999


Q ss_pred             EEecchh------------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         206 IYISQAI------------RDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       206 v~~~~~~------------~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      |+++++.            ..+...+.++|+|||.|+++.....
T Consensus       199 IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~  242 (286)
T PF10672_consen  199 IILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH  242 (286)
T ss_dssp             EEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence            9999973            2455678899999999987766544

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.92  E-value=9.5e-09  Score=90.25  Aligned_cols=95  Identities=22%  Similarity=0.227  Sum_probs=74.3

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCC
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAP  202 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  202 (299)
                      +.......++.+|||||||+|.++..++..+.+|+++|+++.+++.+++++...    ....+++++.+|+.....  ..
T Consensus        28 Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~----~~~~~v~ii~~Dal~~~~--~~  101 (294)
T PTZ00338         28 IVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNS----PLASKLEVIEGDALKTEF--PY  101 (294)
T ss_pred             HHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhc----CCCCcEEEEECCHhhhcc--cc
Confidence            333445678899999999999999999999989999999999999999998762    225689999999876433  35


Q ss_pred             eeEEEecchhhhHHHHHHHhc
Q psy7837         203 YDVIYISQAIRDIPWHIVDQL  223 (299)
Q Consensus       203 fD~v~~~~~~~~~~~~~~~~L  223 (299)
                      ||.|+++.+.....+.+.++|
T Consensus       102 ~d~VvaNlPY~Istpil~~ll  122 (294)
T PTZ00338        102 FDVCVANVPYQISSPLVFKLL  122 (294)
T ss_pred             cCEEEecCCcccCcHHHHHHH
Confidence            899999888754434344444

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.91  E-value=1.6e-08  Score=82.13  Aligned_cols=107  Identities=21%  Similarity=0.280  Sum_probs=72.0

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC----CCC
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY----PDA  200 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~  200 (299)
                      ....++.+|||+|||+|..++.++..  ..+|+.+|.++ .++.++.|++.|+.  ....++.+...|.....    ...
T Consensus        41 ~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~--~~~~~v~v~~L~Wg~~~~~~~~~~  117 (173)
T PF10294_consen   41 PELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS--LLDGRVSVRPLDWGDELDSDLLEP  117 (173)
T ss_dssp             GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT----------EEEE--TTS-HHHHHHS-
T ss_pred             hhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc--cccccccCcEEEecCccccccccc
Confidence            34577899999999999999999999  67899999999 99999999998521  13567888888875422    233


Q ss_pred             CCeeEEEecchh------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         201 APYDVIYISQAI------RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       201 ~~fD~v~~~~~~------~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      .+||+|+...++      ..+.+.+.++|+++|.+++.....
T Consensus       118 ~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R  159 (173)
T PF10294_consen  118 HSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR  159 (173)
T ss_dssp             SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred             ccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence            679999988775      345578899999999977776544

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.91  E-value=9.4e-09  Score=85.03  Aligned_cols=102  Identities=24%  Similarity=0.295  Sum_probs=80.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC---CCCCCCeeEEE
Q psy7837         133 SKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG---YPDAAPYDVIY  207 (299)
Q Consensus       133 ~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~fD~v~  207 (299)
                      ..+||||||.|.+...+|..  ...++|+|++...+..+.+++..     ....|+.++.+|+...   ..+.+++|.|+
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~-----~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~   93 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEK-----RGLKNVRFLRGDARELLRRLFPPGSVDRIY   93 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHH-----HTTSSEEEEES-CTTHHHHHSTTTSEEEEE
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHh-----hcccceEEEEccHHHHHhhcccCCchheEE
Confidence            38999999999999999987  56799999999999999998888     5789999999998852   23457899999


Q ss_pred             ecchhh--------------hHHHHHHHhccCCcEEEEEecCCCCc
Q psy7837         208 ISQAIR--------------DIPWHIVDQLKLGGRMLFIKGHEDDI  239 (299)
Q Consensus       208 ~~~~~~--------------~~~~~~~~~L~~gG~lv~~~~~~~~~  239 (299)
                      ++.+-+              .+.+.+.+.|+|||.+.+.+......
T Consensus        94 i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~  139 (195)
T PF02390_consen   94 INFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYA  139 (195)
T ss_dssp             EES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHH
T ss_pred             EeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHH
Confidence            988743              34468899999999999998765543

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.90  E-value=8.9e-09  Score=84.09  Aligned_cols=110  Identities=17%  Similarity=0.159  Sum_probs=77.2

Q ss_pred             HHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcC--Ce---------EEEEeCChHHHHHHHHHHHhcCCcccCCCCeE
Q psy7837         119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMG--AK---------VYAIEHVKNLCKRAMKNIRRGAPAIALAENFE  187 (299)
Q Consensus       119 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~--~~---------v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~  187 (299)
                      +...+-.++...++..|+|.-||+|.+.++.+..+  ..         ++|.|+++.+++.+++|++..    +....+.
T Consensus        16 lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a----g~~~~i~   91 (179)
T PF01170_consen   16 LAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA----GVEDYID   91 (179)
T ss_dssp             HHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT----T-CGGEE
T ss_pred             HHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc----ccCCceE
Confidence            33445566777889999999999999999887763  33         779999999999999999874    4456789


Q ss_pred             EEEcCCCCCCCCCCCeeEEEecchhh--------------hHHHHHHHhccCCcEEEEEe
Q psy7837         188 FVCADGRRGYPDAAPYDVIYISQAIR--------------DIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       188 ~~~~d~~~~~~~~~~fD~v~~~~~~~--------------~~~~~~~~~L~~gG~lv~~~  233 (299)
                      +.++|+.......+++|.|++++++-              .+.+++.++|++ ..+++..
T Consensus        92 ~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~  150 (179)
T PF01170_consen   92 FIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT  150 (179)
T ss_dssp             EEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred             EEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence            99999987664457899999999851              234577888888 4344433

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.90  E-value=1.2e-07  Score=76.61  Aligned_cols=107  Identities=21%  Similarity=0.271  Sum_probs=85.0

Q ss_pred             hcc-cCCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC---CCCC
Q psy7837         126 YGH-LVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG---YPDA  200 (299)
Q Consensus       126 ~~~-~~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~  200 (299)
                      +.+ ...|.++||+.+|||.++++.+++|+. ++.+|.+...+..+++|++..    ....+..++..|+...   ....
T Consensus        37 l~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l----~~~~~~~~~~~da~~~L~~~~~~  112 (187)
T COG0742          37 LAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKAL----GLEGEARVLRNDALRALKQLGTR  112 (187)
T ss_pred             ccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh----CCccceEEEeecHHHHHHhcCCC
Confidence            444 478999999999999999999999875 999999999999999999872    3357889999998742   1222


Q ss_pred             CCeeEEEecchhhh-HH--H------HHHHhccCCcEEEEEecCC
Q psy7837         201 APYDVIYISQAIRD-IP--W------HIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       201 ~~fD~v~~~~~~~~-~~--~------~~~~~L~~gG~lv~~~~~~  236 (299)
                      ++||+|++++++.. +.  .      .-..+|+|+|.+++.....
T Consensus       113 ~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         113 EPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             CcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            35999999999862 22  1      1246799999999987654

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.89  E-value=2.4e-08  Score=86.50  Aligned_cols=80  Identities=26%  Similarity=0.292  Sum_probs=67.0

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      .....++.+|||+|||+|.++..+++.+.+++++|+++.+++.+++++..       ..+++++++|+.....  ..||.
T Consensus        24 ~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~-------~~~v~ii~~D~~~~~~--~~~d~   94 (258)
T PRK14896         24 YAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA-------AGNVEIIEGDALKVDL--PEFNK   94 (258)
T ss_pred             hcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc-------CCCEEEEEeccccCCc--hhceE
Confidence            34556789999999999999999999988999999999999999988643       3589999999986433  34899


Q ss_pred             EEecchhhh
Q psy7837         206 IYISQAIRD  214 (299)
Q Consensus       206 v~~~~~~~~  214 (299)
                      |+++.+...
T Consensus        95 Vv~NlPy~i  103 (258)
T PRK14896         95 VVSNLPYQI  103 (258)
T ss_pred             EEEcCCccc
Confidence            999988753

>KOG2904|consensus

Probab=98.89  E-value=6.2e-08  Score=81.73  Aligned_cols=102  Identities=21%  Similarity=0.129  Sum_probs=79.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC----CC-CCCCCe
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR----GY-PDAAPY  203 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~----~~-~~~~~f  203 (299)
                      .+..+||+|||+|..++.++..  ..+|+++|.|+.++..|.+|++++    ....++.+++.+...    .. ...+++
T Consensus       148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~----~l~g~i~v~~~~me~d~~~~~~l~~~~~  223 (328)
T KOG2904|consen  148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRL----KLSGRIEVIHNIMESDASDEHPLLEGKI  223 (328)
T ss_pred             ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHH----hhcCceEEEecccccccccccccccCce
Confidence            3558999999999999988765  567999999999999999999985    566778888655442    22 233789


Q ss_pred             eEEEecchhh--------------------------------hHHHHHHHhccCCcEEEEEecCC
Q psy7837         204 DVIYISQAIR--------------------------------DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       204 D~v~~~~~~~--------------------------------~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      |++++|++.-                                ++..-..++|+|||.+.+.....
T Consensus       224 dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~  288 (328)
T KOG2904|consen  224 DLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER  288 (328)
T ss_pred             eEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence            9999998741                                22235689999999999998743

>PHA03412 putative methyltransferase; Provisional

Probab=98.89  E-value=1.3e-08  Score=85.32  Aligned_cols=70  Identities=17%  Similarity=0.207  Sum_probs=58.6

Q ss_pred             CCeEEEEcCCCcHHHHHHHHc-----CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837         132 GSKVLDIGSGSGYLSALFAYM-----GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI  206 (299)
Q Consensus       132 ~~~vLDiG~G~G~~~~~la~~-----~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  206 (299)
                      +.+|||+|||+|.+++.+++.     ..+|+++|+++.+++.++++.          .++.++.+|+..... .++||+|
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~----------~~~~~~~~D~~~~~~-~~~FDlI  118 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV----------PEATWINADALTTEF-DTLFDMA  118 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc----------cCCEEEEcchhcccc-cCCccEE
Confidence            679999999999999988764     457999999999999999763          247889999875433 3689999


Q ss_pred             Eecchh
Q psy7837         207 YISQAI  212 (299)
Q Consensus       207 ~~~~~~  212 (299)
                      ++|+++
T Consensus       119 IsNPPY  124 (241)
T PHA03412        119 ISNPPF  124 (241)
T ss_pred             EECCCC
Confidence            999986

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.88  E-value=1.3e-08  Score=85.82  Aligned_cols=114  Identities=21%  Similarity=0.213  Sum_probs=73.0

Q ss_pred             HHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHH-HHHHHHhcCCcccCCCCeEEEEcCC
Q psy7837         116 AETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKR-AMKNIRRGAPAIALAENFEFVCADG  193 (299)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~-a~~~~~~~~~~~~~~~~v~~~~~d~  193 (299)
                      +.++...+.......++.+|||+|||+|.++..+++.|+ +|+++|++++++.. .+++.+..   .....|++  ..+.
T Consensus        60 ~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~---~~~~~ni~--~~~~  134 (228)
T TIGR00478        60 GEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVK---VLERTNIR--YVTP  134 (228)
T ss_pred             HHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCee---EeecCCcc--cCCH
Confidence            344445555555556889999999999999999999975 69999999987765 33322100   00112222  1111


Q ss_pred             CCCCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         194 RRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       194 ~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      .....+-..+|++|+...  .+.+.+...|++ |.+++-+.+..
T Consensus       135 ~~~~~d~~~~DvsfiS~~--~~l~~i~~~l~~-~~~~~L~KPqF  175 (228)
T TIGR00478       135 ADIFPDFATFDVSFISLI--SILPELDLLLNP-NDLTLLFKPQF  175 (228)
T ss_pred             hHcCCCceeeeEEEeehH--hHHHHHHHHhCc-CeEEEEcChHh
Confidence            122222245777665444  377899999999 88888776554

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK03612 spermidine synthase; Provisional

Probab=98.88  E-value=9.1e-09  Score=97.60  Aligned_cols=107  Identities=15%  Similarity=0.102  Sum_probs=80.4

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHH--HHhcCCcccCCCCeEEEEcCCCCCCC-CCCCee
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKN--IRRGAPAIALAENFEFVCADGRRGYP-DAAPYD  204 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~--~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD  204 (299)
                      .++++|||+|||+|..+..+.+..  .+++++|+++++++.++++  +...+.......+++++.+|+..... ..++||
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            457899999999999999998874  5799999999999999984  22210000123689999999875322 236899


Q ss_pred             EEEecchhh-----------hHHHHHHHhccCCcEEEEEecCC
Q psy7837         205 VIYISQAIR-----------DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       205 ~v~~~~~~~-----------~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +|+++....           .+.+.+.+.|+|||.+++...++
T Consensus       376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~  418 (521)
T PRK03612        376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP  418 (521)
T ss_pred             EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCc
Confidence            999986532           24468899999999999976544

>PLN02672 methionine S-methyltransferase

Probab=98.87  E-value=2.1e-08  Score=100.76  Aligned_cols=109  Identities=23%  Similarity=0.183  Sum_probs=82.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcc-----------cCCCCeEEEEcCCCCCC
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAI-----------ALAENFEFVCADGRRGY  197 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~-----------~~~~~v~~~~~d~~~~~  197 (299)
                      ++.+|||+|||+|.+++.+++.  ..+|+++|+|+.+++.|++|++.++-+.           ....+++++++|.....
T Consensus       118 ~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~  197 (1082)
T PLN02672        118 RDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC  197 (1082)
T ss_pred             CCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence            3578999999999999999876  3689999999999999999998742100           11247999999988655


Q ss_pred             CCC-CCeeEEEecchhh--------------------------------------------hHHHHHHHhccCCcEEEEE
Q psy7837         198 PDA-APYDVIYISQAIR--------------------------------------------DIPWHIVDQLKLGGRMLFI  232 (299)
Q Consensus       198 ~~~-~~fD~v~~~~~~~--------------------------------------------~~~~~~~~~L~~gG~lv~~  232 (299)
                      ... .+||+|++|++.-                                            .+..+..++|+|||.+++.
T Consensus       198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE  277 (1082)
T PLN02672        198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN  277 (1082)
T ss_pred             cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence            322 3699999998731                                            0113556799999999999


Q ss_pred             ecCCCCc
Q psy7837         233 KGHEDDI  239 (299)
Q Consensus       233 ~~~~~~~  239 (299)
                      ++.....
T Consensus       278 iG~~q~~  284 (1082)
T PLN02672        278 MGGRPGQ  284 (1082)
T ss_pred             ECccHHH
Confidence            8866443

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.87  E-value=1.7e-08  Score=88.04  Aligned_cols=88  Identities=19%  Similarity=0.153  Sum_probs=68.6

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      ...++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++.        ..+++++++|+.....+.-.+|.|+
T Consensus        39 ~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~--------~~~v~~i~~D~~~~~~~~~~~~~vv  110 (272)
T PRK00274         39 GPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA--------EDNLTIIEGDALKVDLSELQPLKVV  110 (272)
T ss_pred             CCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc--------cCceEEEEChhhcCCHHHcCcceEE
Confidence            45678899999999999999999998899999999999999988752        2589999999887543321158899


Q ss_pred             ecchhhhHHHHHHHhc
Q psy7837         208 ISQAIRDIPWHIVDQL  223 (299)
Q Consensus       208 ~~~~~~~~~~~~~~~L  223 (299)
                      +|.+.....+-+.++|
T Consensus       111 ~NlPY~iss~ii~~~l  126 (272)
T PRK00274        111 ANLPYNITTPLLFHLL  126 (272)
T ss_pred             EeCCccchHHHHHHHH
Confidence            8888654444444444

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.86  E-value=6e-09  Score=85.81  Aligned_cols=106  Identities=23%  Similarity=0.272  Sum_probs=86.2

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC--CCCCCCeeE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG--YPDAAPYDV  205 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~  205 (299)
                      .+.|.+|||...|-|++++..+++|+ .|+.+|.+++.++.|.-|--..  . ....+++++.||+.+.  -..+.+||+
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr--~-l~~~~i~iilGD~~e~V~~~~D~sfDa  208 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSR--E-LFEIAIKIILGDAYEVVKDFDDESFDA  208 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCc--c-ccccccEEecccHHHHHhcCCccccce
Confidence            45699999999999999999999999 7999999999999998774321  0 2234689999998742  234578999


Q ss_pred             EEecchh---------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         206 IYISQAI---------RDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       206 v~~~~~~---------~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      |+-+++-         ..+.++++++|++||+++-.++++.
T Consensus       209 IiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg  249 (287)
T COG2521         209 IIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG  249 (287)
T ss_pred             EeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence            9998873         2455799999999999999998876

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.86  E-value=4.7e-08  Score=84.43  Aligned_cols=92  Identities=23%  Similarity=0.162  Sum_probs=73.3

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCee--
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYD--  204 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD--  204 (299)
                      ....++.+|||+|||+|.++..+++.+..++++|+++.+++.+++++..       ..+++++.+|+......  .+|  
T Consensus        25 ~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~-------~~~v~v~~~D~~~~~~~--~~d~~   95 (253)
T TIGR00755        25 ANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL-------YERLEVIEGDALKVDLP--DFPKQ   95 (253)
T ss_pred             cCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc-------CCcEEEEECchhcCChh--HcCCc
Confidence            3456789999999999999999999998999999999999999887632       35899999998865433  366  


Q ss_pred             -EEEecchhhhHHHHHHHhc-cCCc
Q psy7837         205 -VIYISQAIRDIPWHIVDQL-KLGG  227 (299)
Q Consensus       205 -~v~~~~~~~~~~~~~~~~L-~~gG  227 (299)
                       .|+++.+++...+.+.++| .+++
T Consensus        96 ~~vvsNlPy~i~~~il~~ll~~~~~  120 (253)
T TIGR00755        96 LKVVSNLPYNISSPLIFKLLEKPKF  120 (253)
T ss_pred             ceEEEcCChhhHHHHHHHHhccCCC
Confidence             8888888766656666666 4544

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>KOG1663|consensus

Probab=98.86  E-value=2e-08  Score=82.84  Aligned_cols=115  Identities=18%  Similarity=0.300  Sum_probs=93.0

Q ss_pred             hHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCC
Q psy7837          53 DHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYG  132 (299)
Q Consensus        53 ~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~  132 (299)
                      ....+++.+.. +..+.++||+|.=+||.+...|..+.++|+++++|+++.-.+.+.+..+..                 
T Consensus        60 d~g~fl~~li~-~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~a-----------------  121 (237)
T KOG1663|consen   60 DKGQFLQMLIR-LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLA-----------------  121 (237)
T ss_pred             HHHHHHHHHHH-HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhc-----------------
Confidence            34555555553 566789999999999999999999999999999999999999987766652                 


Q ss_pred             CeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC------CCCCCeeEE
Q psy7837         133 SKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY------PDAAPYDVI  206 (299)
Q Consensus       133 ~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~v  206 (299)
                                                                      +....++++++++...+      .+.+.||++
T Consensus       122 ------------------------------------------------gv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa  153 (237)
T KOG1663|consen  122 ------------------------------------------------GVDHKITFIEGPALESLDELLADGESGTFDFA  153 (237)
T ss_pred             ------------------------------------------------cccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence                                                            56778999999876422      134789999


Q ss_pred             Eecchhh---hHHHHHHHhccCCcEEEEEe
Q psy7837         207 YISQAIR---DIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       207 ~~~~~~~---~~~~~~~~~L~~gG~lv~~~  233 (299)
                      |++..-.   ...+++.+++|+||.|++..
T Consensus       154 FvDadK~nY~~y~e~~l~Llr~GGvi~~DN  183 (237)
T KOG1663|consen  154 FVDADKDNYSNYYERLLRLLRVGGVIVVDN  183 (237)
T ss_pred             EEccchHHHHHHHHHHHhhcccccEEEEec
Confidence            9998643   45579999999999999975

>KOG2361|consensus

Probab=98.84  E-value=6.5e-09  Score=86.13  Aligned_cols=98  Identities=21%  Similarity=0.221  Sum_probs=78.8

Q ss_pred             eEEEEcCCCcHHHHHHHHc----CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC----CCCCCCCeeE
Q psy7837         134 KVLDIGSGSGYLSALFAYM----GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR----GYPDAAPYDV  205 (299)
Q Consensus       134 ~vLDiG~G~G~~~~~la~~----~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~fD~  205 (299)
                      ++||+|||.|.....+.+-    +..++++|.|+.+++..+++...      ...++...+.|...    ...+.+++|.
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~------~e~~~~afv~Dlt~~~~~~~~~~~svD~  147 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY------DESRVEAFVWDLTSPSLKEPPEEGSVDI  147 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc------chhhhcccceeccchhccCCCCcCccce
Confidence            8999999999999988765    36799999999999999998765      34667777777763    2345589999


Q ss_pred             EEecchhhhHH--------HHHHHhccCCcEEEEEecCCC
Q psy7837         206 IYISQAIRDIP--------WHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       206 v~~~~~~~~~~--------~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      +++..++..+.        +++.++|||||.|++-.....
T Consensus       148 it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~  187 (264)
T KOG2361|consen  148 ITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRY  187 (264)
T ss_pred             EEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccc
Confidence            99988875443        589999999999999876543

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.84  E-value=2.9e-08  Score=87.93  Aligned_cols=133  Identities=20%  Similarity=0.227  Sum_probs=103.9

Q ss_pred             CceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHH
Q psy7837          92 SGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAM  170 (299)
Q Consensus        92 ~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~  170 (299)
                      .|..+-+|++..|.......=+         .+......+|.+|+|..||-|++++.+|+.|.. |+++|+||.+++.++
T Consensus       158 ~G~~f~vD~~Kv~Fsprl~~ER---------~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~  228 (341)
T COG2520         158 NGCRFKVDVAKVYFSPRLSTER---------ARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLK  228 (341)
T ss_pred             CCEEEEEchHHeEECCCchHHH---------HHHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHH
Confidence            5778888877766432211111         111223466999999999999999999999876 999999999999999


Q ss_pred             HHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchh--hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         171 KNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAI--RDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       171 ~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~--~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      +|++.|    .....+..+++|.....+..+.+|.|+++.+.  +...+...+.+++||.+.+....+.
T Consensus       229 eNi~LN----~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~~a~~fl~~A~~~~k~~g~iHyy~~~~e  293 (341)
T COG2520         229 ENIRLN----KVEGRVEPILGDAREVAPELGVADRIIMGLPKSAHEFLPLALELLKDGGIIHYYEFVPE  293 (341)
T ss_pred             HHHHhc----CccceeeEEeccHHHhhhccccCCEEEeCCCCcchhhHHHHHHHhhcCcEEEEEeccch
Confidence            999995    34455999999998765554789999999875  5677889999999999998876554

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.80  E-value=2.2e-09  Score=88.15  Aligned_cols=98  Identities=16%  Similarity=0.220  Sum_probs=74.4

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCCCCeeEEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDAAPYDVIY  207 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~  207 (299)
                      .+-.++||+|||||..+..+..+..+.+++|+|.+|++.|.++        ...+.  +.++|.....  ....+||+|.
T Consensus       124 g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eK--------g~YD~--L~~Aea~~Fl~~~~~er~DLi~  193 (287)
T COG4976         124 GPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEK--------GLYDT--LYVAEAVLFLEDLTQERFDLIV  193 (287)
T ss_pred             CccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhc--------cchHH--HHHHHHHHHhhhccCCcccchh
Confidence            3457999999999999999999999999999999999999876        22221  2233333222  2347899999


Q ss_pred             ecchhh------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837         208 ISQAIR------DIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       208 ~~~~~~------~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      +..++.      .+.......|+|||.+.+++..-.
T Consensus       194 AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~  229 (287)
T COG4976         194 AADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLP  229 (287)
T ss_pred             hhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccC
Confidence            888764      344578899999999999986544

>PRK04148 hypothetical protein; Provisional

Probab=98.79  E-value=2e-07  Score=71.55  Aligned_cols=93  Identities=16%  Similarity=0.149  Sum_probs=72.4

Q ss_pred             CCCCeEEEEcCCCcH-HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC-CCCeeEEE
Q psy7837         130 VYGSKVLDIGSGSGY-LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD-AAPYDVIY  207 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~-~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~  207 (299)
                      .++.+++|+|||+|. ++..+++.|.+|+++|+++..++.++++            .++++.+|......+ -..+|+|+
T Consensus        15 ~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~------------~~~~v~dDlf~p~~~~y~~a~liy   82 (134)
T PRK04148         15 GKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL------------GLNAFVDDLFNPNLEIYKNAKLIY   82 (134)
T ss_pred             ccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh------------CCeEEECcCCCCCHHHHhcCCEEE
Confidence            456899999999996 8889999999999999999998888765            467889998864433 25699999


Q ss_pred             ecchhhhHHHHHHHhccC-CcEEEEEec
Q psy7837         208 ISQAIRDIPWHIVDQLKL-GGRMLFIKG  234 (299)
Q Consensus       208 ~~~~~~~~~~~~~~~L~~-gG~lv~~~~  234 (299)
                      +..+...+...+.++-+. |.-+++...
T Consensus        83 sirpp~el~~~~~~la~~~~~~~~i~~l  110 (134)
T PRK04148         83 SIRPPRDLQPFILELAKKINVPLIIKPL  110 (134)
T ss_pred             EeCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence            998888777766655544 555555543

>KOG3191|consensus

Probab=98.79  E-value=8.2e-08  Score=76.22  Aligned_cols=102  Identities=19%  Similarity=0.214  Sum_probs=81.4

Q ss_pred             CCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         132 GSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       132 ~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      ..-++|||||||..+..+++.   +.-+.++|+|+.+++..++.++.      ...++..++.|....... ++.|+++.
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~------n~~~~~~V~tdl~~~l~~-~~VDvLvf  116 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC------NRVHIDVVRTDLLSGLRN-ESVDVLVF  116 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh------cCCccceeehhHHhhhcc-CCccEEEE
Confidence            678999999999999999887   34599999999999998888876      345688999998876655 88999999


Q ss_pred             cchhh---------------------------hHHHHHHHhccCCcEEEEEecCCCCcc
Q psy7837         209 SQAIR---------------------------DIPWHIVDQLKLGGRMLFIKGHEDDIM  240 (299)
Q Consensus       209 ~~~~~---------------------------~~~~~~~~~L~~gG~lv~~~~~~~~~~  240 (299)
                      +.+..                           .+++.+-..|.|.|.+++.....+..+
T Consensus       117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~  175 (209)
T KOG3191|consen  117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPK  175 (209)
T ss_pred             CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHH
Confidence            88641                           122345678889999999887666544

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.75  E-value=9.4e-08  Score=80.50  Aligned_cols=102  Identities=25%  Similarity=0.302  Sum_probs=84.6

Q ss_pred             CeEEEEcCCCcHHHHHHHHcCC--eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC---CCCCCCCeeEEE
Q psy7837         133 SKVLDIGSGSGYLSALFAYMGA--KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR---GYPDAAPYDVIY  207 (299)
Q Consensus       133 ~~vLDiG~G~G~~~~~la~~~~--~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~~~~fD~v~  207 (299)
                      ..+||||||.|.+...+|+...  .++|+|+....+..+.+.+..     ....|+.+++.|+..   ...+.++.|.|+
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~-----~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~  124 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKE-----LGLKNLRLLCGDAVEVLDYLIPDGSLDKIY  124 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHH-----cCCCcEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence            5899999999999999999864  599999999999999888877     455599999999884   344556899999


Q ss_pred             ecchhh--------------hHHHHHHHhccCCcEEEEEecCCCCc
Q psy7837         208 ISQAIR--------------DIPWHIVDQLKLGGRMLFIKGHEDDI  239 (299)
Q Consensus       208 ~~~~~~--------------~~~~~~~~~L~~gG~lv~~~~~~~~~  239 (299)
                      ++.+-+              ...+.+.+.|++||.|.+.+......
T Consensus       125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~  170 (227)
T COG0220         125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYF  170 (227)
T ss_pred             EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHH
Confidence            988743              34568999999999999998766543

>KOG3420|consensus

Probab=98.75  E-value=2.5e-08  Score=76.17  Aligned_cols=79  Identities=18%  Similarity=0.219  Sum_probs=68.6

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI  206 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  206 (299)
                      .-..|++++|+|||+|.++...+-.+.+ |+|+|+++++++.+++|++.      ...++++.++|+....+..+.||.+
T Consensus        45 gdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeE------fEvqidlLqcdildle~~~g~fDta  118 (185)
T KOG3420|consen   45 GDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEE------FEVQIDLLQCDILDLELKGGIFDTA  118 (185)
T ss_pred             ccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHH------hhhhhheeeeeccchhccCCeEeeE
Confidence            3457999999999999999888777665 99999999999999999887      4567799999999877777889999


Q ss_pred             Eecchh
Q psy7837         207 YISQAI  212 (299)
Q Consensus       207 ~~~~~~  212 (299)
                      +++.++
T Consensus       119 viNppF  124 (185)
T KOG3420|consen  119 VINPPF  124 (185)
T ss_pred             EecCCC
Confidence            999986

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.74  E-value=7e-08  Score=85.40  Aligned_cols=81  Identities=17%  Similarity=0.240  Sum_probs=60.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEc-CCCC---CC-CCCCCe
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA-DGRR---GY-PDAAPY  203 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-d~~~---~~-~~~~~f  203 (299)
                      ++.++||||||+|.+...++..  +++++++|+++.+++.|++|++.+.   ....++.+... |...   .. ...+.|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np---~l~~~I~~~~~~~~~~i~~~i~~~~~~f  190 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANP---GLNGAIRLRLQKDSKAIFKGIIHKNERF  190 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcc---CCcCcEEEEEccchhhhhhcccccCCce
Confidence            4679999999999877776654  7899999999999999999999841   13456777643 3222   11 134689


Q ss_pred             eEEEecchhhh
Q psy7837         204 DVIYISQAIRD  214 (299)
Q Consensus       204 D~v~~~~~~~~  214 (299)
                      |+|+||+++..
T Consensus       191 DlivcNPPf~~  201 (321)
T PRK11727        191 DATLCNPPFHA  201 (321)
T ss_pred             EEEEeCCCCcC
Confidence            99999999853

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.72  E-value=3.8e-07  Score=82.44  Aligned_cols=110  Identities=24%  Similarity=0.318  Sum_probs=86.0

Q ss_pred             cCCCCCEEEEEccCCCHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCC
Q psy7837          64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISG-KVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGS  142 (299)
Q Consensus        64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g-~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~  142 (299)
                      ..+||++|||++++.|.-|..+++.+..+| .|+++|+++.-+...++++.+                            
T Consensus       153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~R----------------------------  204 (355)
T COG0144         153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKR----------------------------  204 (355)
T ss_pred             CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHH----------------------------
Confidence            489999999999999999999999987754 458888888888888888777                            


Q ss_pred             cHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC---CCCCCCeeEEEecchhh------
Q psy7837         143 GYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG---YPDAAPYDVIYISQAIR------  213 (299)
Q Consensus       143 G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~fD~v~~~~~~~------  213 (299)
                                                            .+..|+..+..|....   .....+||.|+++++..      
T Consensus       205 --------------------------------------lG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~ir  246 (355)
T COG0144         205 --------------------------------------LGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIR  246 (355)
T ss_pred             --------------------------------------cCCCceEEEecccccccccccccCcCcEEEECCCCCCCcccc
Confidence                                                  4667788888887642   22223699999998742      


Q ss_pred             ----------------------hHHHHHHHhccCCcEEEEEecCCCCc
Q psy7837         214 ----------------------DIPWHIVDQLKLGGRMLFIKGHEDDI  239 (299)
Q Consensus       214 ----------------------~~~~~~~~~L~~gG~lv~~~~~~~~~  239 (299)
                                            .+.+...+.|||||.|+.++-+....
T Consensus       247 r~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e  294 (355)
T COG0144         247 RDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE  294 (355)
T ss_pred             cCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh
Confidence                                  23357889999999999997654443

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.72  E-value=6.4e-08  Score=88.07  Aligned_cols=96  Identities=22%  Similarity=0.164  Sum_probs=77.2

Q ss_pred             CCeEEEEcCCCcHHHHHHHHc-C-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837         132 GSKVLDIGSGSGYLSALFAYM-G-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS  209 (299)
Q Consensus       132 ~~~vLDiG~G~G~~~~~la~~-~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  209 (299)
                      +.+|||++||+|.+++.++.. + ..|+++|+++.+++.+++|++.|     ...++++..+|+.........||+|+++
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N-----~~~~~~v~~~Da~~~l~~~~~fD~V~lD  132 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELN-----GLENEKVFNKDANALLHEERKFDVVDID  132 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh-----CCCceEEEhhhHHHHHhhcCCCCEEEEC
Confidence            468999999999999999865 4 37999999999999999999884     4567789999987533213569999998


Q ss_pred             chh--hhHHHHHHHhccCCcEEEEE
Q psy7837         210 QAI--RDIPWHIVDQLKLGGRMLFI  232 (299)
Q Consensus       210 ~~~--~~~~~~~~~~L~~gG~lv~~  232 (299)
                      +.-  ..+.+...+.+++||.++++
T Consensus       133 P~Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        133 PFGSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             CCCCcHHHHHHHHHHhcCCCEEEEE
Confidence            742  23445667778999999998

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.69  E-value=2.1e-07  Score=82.97  Aligned_cols=107  Identities=20%  Similarity=0.189  Sum_probs=75.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCc-----ccCCCCeEEEEcCCCCC-----CCC
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPA-----IALAENFEFVCADGRRG-----YPD  199 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~-----~~~~~~v~~~~~d~~~~-----~~~  199 (299)
                      ++.+|||+|||-|.-..-+...+. .++|+|++...++.|+++.+.....     ....-...++.+|....     +..
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~  141 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP  141 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence            789999999999998888777764 5999999999999999998321000     01123567888887631     222


Q ss_pred             -CCCeeEEEecchhhh----------HHHHHHHhccCCcEEEEEecCCC
Q psy7837         200 -AAPYDVIYISQAIRD----------IPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       200 -~~~fD~v~~~~~~~~----------~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                       ...||+|-|...+|.          +...+...|+|||+++..++...
T Consensus       142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~  190 (331)
T PF03291_consen  142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD  190 (331)
T ss_dssp             TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred             cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence             258999999988763          45689999999999999988654

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.68  E-value=3.3e-07  Score=84.99  Aligned_cols=95  Identities=25%  Similarity=0.256  Sum_probs=69.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcC------CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCee
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMG------AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYD  204 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~------~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  204 (299)
                      ++..|+|+|||+|.+....++.+      .+|+++|-++.+....++.+..+    +...+|+++.+|+.....+ .+.|
T Consensus       186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n----~w~~~V~vi~~d~r~v~lp-ekvD  260 (448)
T PF05185_consen  186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN----GWGDKVTVIHGDMREVELP-EKVD  260 (448)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT----TTTTTEEEEES-TTTSCHS-S-EE
T ss_pred             cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc----CCCCeEEEEeCcccCCCCC-Ccee
Confidence            46789999999999998776664      47999999999998887775553    4668999999999975444 5899


Q ss_pred             EEEecch--------hhhHHHHHHHhccCCcEEE
Q psy7837         205 VIYISQA--------IRDIPWHIVDQLKLGGRML  230 (299)
Q Consensus       205 ~v~~~~~--------~~~~~~~~~~~L~~gG~lv  230 (299)
                      +|++-..        .....+...+.|||||+++
T Consensus       261 IIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  261 IIVSELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             EEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             EEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            9987321        2334467788999998654

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>KOG1500|consensus

Probab=98.67  E-value=1.6e-07  Score=81.36  Aligned_cols=105  Identities=29%  Similarity=0.246  Sum_probs=82.0

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCC
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAA  201 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  201 (299)
                      +-....-..++.|||+|||+|.++...++.|++ |+++|.| +|.+.|++.++.|    +..+++.++.|-+.+...+ +
T Consensus       169 il~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N----~~~~rItVI~GKiEdieLP-E  242 (517)
T KOG1500|consen  169 ILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASN----NLADRITVIPGKIEDIELP-E  242 (517)
T ss_pred             HHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcC----CccceEEEccCccccccCc-h
Confidence            333444578999999999999999999999876 9999986 5788898888876    6778999999988864443 5


Q ss_pred             CeeEEEecchh-----hhHHH---HHHHhccCCcEEEEEe
Q psy7837         202 PYDVIYISQAI-----RDIPW---HIVDQLKLGGRMLFIK  233 (299)
Q Consensus       202 ~fD~v~~~~~~-----~~~~~---~~~~~L~~gG~lv~~~  233 (299)
                      +.|+++.-+.-     +.+.+   ...+.|+|.|.++=.+
T Consensus       243 k~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~  282 (517)
T KOG1500|consen  243 KVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFPTV  282 (517)
T ss_pred             hccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence            79999986642     22333   4668999999887544

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.67  E-value=6.3e-07  Score=76.84  Aligned_cols=97  Identities=25%  Similarity=0.293  Sum_probs=75.0

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCC
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDA  200 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  200 (299)
                      +.......+..+|+|||+|+|.++..+++.  +.+++..|. |..++.+++           ..+++++.+|+....+. 
T Consensus        92 ~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----------~~rv~~~~gd~f~~~P~-  158 (241)
T PF00891_consen   92 LLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----------ADRVEFVPGDFFDPLPV-  158 (241)
T ss_dssp             HHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----------TTTEEEEES-TTTCCSS-
T ss_pred             hhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----------ccccccccccHHhhhcc-
Confidence            333444556679999999999999999877  678999998 777777766           25899999999854443 


Q ss_pred             CCeeEEEecchhhhH--------HHHHHHhccCC--cEEEEEec
Q psy7837         201 APYDVIYISQAIRDI--------PWHIVDQLKLG--GRMLFIKG  234 (299)
Q Consensus       201 ~~fD~v~~~~~~~~~--------~~~~~~~L~~g--G~lv~~~~  234 (299)
                        +|++++..+++..        .+++.+.|+||  |+|+|...
T Consensus       159 --~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~  200 (241)
T PF00891_consen  159 --ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEM  200 (241)
T ss_dssp             --ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred             --ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence              9999999998754        35789999999  99999754

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>KOG0820|consensus

Probab=98.66  E-value=2.2e-07  Score=78.39  Aligned_cols=86  Identities=19%  Similarity=0.195  Sum_probs=73.5

Q ss_pred             HHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCC
Q psy7837         121 KRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDA  200 (299)
Q Consensus       121 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  200 (299)
                      +.|..-+.+++.+.|||+|.|||.+|..+...|..|+++|+++.|+....++.+..    ......+++++|......  
T Consensus        48 ~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gt----p~~~kLqV~~gD~lK~d~--  121 (315)
T KOG0820|consen   48 DQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGT----PKSGKLQVLHGDFLKTDL--  121 (315)
T ss_pred             HHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCC----CccceeeEEecccccCCC--
Confidence            44666678899999999999999999999999999999999999999999998774    345789999999886443  


Q ss_pred             CCeeEEEecchh
Q psy7837         201 APYDVIYISQAI  212 (299)
Q Consensus       201 ~~fD~v~~~~~~  212 (299)
                      ..||.++.+.+.
T Consensus       122 P~fd~cVsNlPy  133 (315)
T KOG0820|consen  122 PRFDGCVSNLPY  133 (315)
T ss_pred             cccceeeccCCc
Confidence            349999997764

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=3.3e-07  Score=78.23  Aligned_cols=99  Identities=19%  Similarity=0.144  Sum_probs=77.4

Q ss_pred             HHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC
Q psy7837         120 IKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD  199 (299)
Q Consensus       120 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  199 (299)
                      .+.|-..+...++..|||||+|.|.+|..+++.+.+|+++|+++.++...++.+.       ...|++++++|+......
T Consensus        19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~-------~~~n~~vi~~DaLk~d~~   91 (259)
T COG0030          19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA-------PYDNLTVINGDALKFDFP   91 (259)
T ss_pred             HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc-------cccceEEEeCchhcCcch
Confidence            4445556677789999999999999999999999999999999999999998864       257999999999865443


Q ss_pred             CC-CeeEEEecchhhhHHHHHHHhccC
Q psy7837         200 AA-PYDVIYISQAIRDIPWHIVDQLKL  225 (299)
Q Consensus       200 ~~-~fD~v~~~~~~~~~~~~~~~~L~~  225 (299)
                      .- .++.|+.|-+..-..+-+.++|+.
T Consensus        92 ~l~~~~~vVaNlPY~Isspii~kll~~  118 (259)
T COG0030          92 SLAQPYKVVANLPYNISSPILFKLLEE  118 (259)
T ss_pred             hhcCCCEEEEcCCCcccHHHHHHHHhc
Confidence            21 589999988865444434444433

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.62  E-value=3.3e-07  Score=77.49  Aligned_cols=89  Identities=25%  Similarity=0.334  Sum_probs=70.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQ  210 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~  210 (299)
                      ...++||||+|.|..+..++..-.+|+++|.|+.|....+++            +.+++..|-.  .....+||+|.|.+
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~k------------g~~vl~~~~w--~~~~~~fDvIscLN  159 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKK------------GFTVLDIDDW--QQTDFKFDVISCLN  159 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhC------------CCeEEehhhh--hccCCceEEEeehh
Confidence            467899999999999999999999999999999998877653            3333333221  12235799999999


Q ss_pred             hhh------hHHHHHHHhccCCcEEEEEe
Q psy7837         211 AIR------DIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       211 ~~~------~~~~~~~~~L~~gG~lv~~~  233 (299)
                      ++.      .+.+.+++.|+|+|++++..
T Consensus       160 vLDRc~~P~~LL~~i~~~l~p~G~lilAv  188 (265)
T PF05219_consen  160 VLDRCDRPLTLLRDIRRALKPNGRLILAV  188 (265)
T ss_pred             hhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence            985      35579999999999999864

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.61  E-value=5.8e-08  Score=77.19  Aligned_cols=76  Identities=26%  Similarity=0.297  Sum_probs=56.4

Q ss_pred             CeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC---CCCeeEEEec
Q psy7837         133 SKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD---AAPYDVIYIS  209 (299)
Q Consensus       133 ~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~v~~~  209 (299)
                      ..|+|+.||.|..++.+|+....|+++|+++..++.++.|++.+    +...++.++++|.......   ...+|+|+++
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vY----Gv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVY----GVADNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHT----T-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHc----CCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence            36999999999999999999999999999999999999999985    3467999999998853221   1228999998


Q ss_pred             chh
Q psy7837         210 QAI  212 (299)
Q Consensus       210 ~~~  212 (299)
                      +++
T Consensus        77 PPW   79 (163)
T PF09445_consen   77 PPW   79 (163)
T ss_dssp             --B
T ss_pred             CCC
Confidence            874

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.61  E-value=7.9e-07  Score=72.62  Aligned_cols=113  Identities=24%  Similarity=0.271  Sum_probs=87.1

Q ss_pred             HHHHHHhhhcccCCCC-eEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCC
Q psy7837         118 TYIKRINFYGHLVYGS-KVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGR  194 (299)
Q Consensus       118 ~~~~~~~~~~~~~~~~-~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  194 (299)
                      .+.+.+.....+.... +++|+|+|.|.-++.++-.  ..+++.+|.+..-+...+.....     .+..|++++++.+.
T Consensus        34 Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~-----L~L~nv~v~~~R~E  108 (184)
T PF02527_consen   34 HILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRE-----LGLSNVEVINGRAE  108 (184)
T ss_dssp             HHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHH-----HT-SSEEEEES-HH
T ss_pred             HHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHH-----hCCCCEEEEEeeec
Confidence            4455555566655554 8999999999999888654  67899999999998888888777     57789999999988


Q ss_pred             CCCCCCCCeeEEEecchh--hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         195 RGYPDAAPYDVIYISQAI--RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       195 ~~~~~~~~fD~v~~~~~~--~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      . .....+||+|++.++.  ..+.+-+...|++||.+++.-+..
T Consensus       109 ~-~~~~~~fd~v~aRAv~~l~~l~~~~~~~l~~~G~~l~~KG~~  151 (184)
T PF02527_consen  109 E-PEYRESFDVVTARAVAPLDKLLELARPLLKPGGRLLAYKGPD  151 (184)
T ss_dssp             H-TTTTT-EEEEEEESSSSHHHHHHHHGGGEEEEEEEEEEESS-
T ss_pred             c-cccCCCccEEEeehhcCHHHHHHHHHHhcCCCCEEEEEcCCC
Confidence            8 3344789999998864  456678889999999999987754

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.60  E-value=7.9e-07  Score=79.46  Aligned_cols=140  Identities=18%  Similarity=0.156  Sum_probs=102.6

Q ss_pred             ceEEEEeCCHHHHHH-HHHHHHH---hHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCC--------------
Q psy7837          93 GKVYTIEHIPELLEA-ARKRVKA---KAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGA--------------  154 (299)
Q Consensus        93 g~v~~~d~~~~~~~~-a~~~l~~---~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~--------------  154 (299)
                      ...+++|.+.+-+.. .-+....   .-+.+...|..++.-.++..++|.-||+|.+.++.|.++.              
T Consensus       149 ~~~l~iDttG~sLhkRGyR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~  228 (381)
T COG0116         149 TATLGIDTTGDSLHKRGYRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEF  228 (381)
T ss_pred             EEEEEEeCCCcchhhccccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhh
Confidence            345677766653321 1111111   1245666788888888899999999999999999887764              


Q ss_pred             ---------------------------eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         155 ---------------------------KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       155 ---------------------------~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                                                 .++|+|+++.+++.|+.|++..    +..+.++|.++|+.....+.+.+|+|+
T Consensus       229 w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~A----Gv~d~I~f~~~d~~~l~~~~~~~gvvI  304 (381)
T COG0116         229 WDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAA----GVGDLIEFKQADATDLKEPLEEYGVVI  304 (381)
T ss_pred             hhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhc----CCCceEEEEEcchhhCCCCCCcCCEEE
Confidence                                       2779999999999999999985    677899999999987554436799999


Q ss_pred             ecchhh--------------hHHHHHHHhccCCcEEEEEecCC
Q psy7837         208 ISQAIR--------------DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       208 ~~~~~~--------------~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +|++.-              .+.+.+.+.++.-+..+++....
T Consensus       305 ~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e~  347 (381)
T COG0116         305 SNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTSED  347 (381)
T ss_pred             eCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEccHH
Confidence            999851              22245667777777888776544

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.59  E-value=1.9e-07  Score=74.94  Aligned_cols=78  Identities=14%  Similarity=0.160  Sum_probs=61.3

Q ss_pred             EEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhH------HHHHHHhccCCcEEE
Q psy7837         157 YAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDI------PWHIVDQLKLGGRML  230 (299)
Q Consensus       157 ~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~------~~~~~~~L~~gG~lv  230 (299)
                      +|+|+|++|++.|+++.+..+.  ....+++++++|+.+.+...++||+|++..+++++      .++++++|||||.++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~--~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~   78 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKAR--SCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVS   78 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccc--cCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEE
Confidence            4899999999999877653100  12357999999998876666799999999887653      468999999999999


Q ss_pred             EEecCC
Q psy7837         231 FIKGHE  236 (299)
Q Consensus       231 ~~~~~~  236 (299)
                      +.....
T Consensus        79 i~d~~~   84 (160)
T PLN02232         79 ILDFNK   84 (160)
T ss_pred             EEECCC
Confidence            876543

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.59  E-value=5.1e-07  Score=78.53  Aligned_cols=111  Identities=20%  Similarity=0.157  Sum_probs=86.6

Q ss_pred             hhhcccCCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCC-
Q psy7837         124 NFYGHLVYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDA-  200 (299)
Q Consensus       124 ~~~~~~~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-  200 (299)
                      ...++..+ ++||-||.|.|..+..+.+..  .+++.+|+++..++.+++-+...... ....+++++..|+....... 
T Consensus        70 ~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~-~~dpRv~i~i~Dg~~~v~~~~  147 (282)
T COG0421          70 PLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGG-ADDPRVEIIIDDGVEFLRDCE  147 (282)
T ss_pred             hhhhCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccc-cCCCceEEEeccHHHHHHhCC
Confidence            33444555 699999999999999999996  57999999999999999988762111 11579999999988644322 


Q ss_pred             CCeeEEEecchhh----------hHHHHHHHhccCCcEEEEEecCC
Q psy7837         201 APYDVIYISQAIR----------DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       201 ~~fD~v~~~~~~~----------~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      .+||+|+++..-.          .+.+.+.+.|+++|+++.....+
T Consensus       148 ~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~  193 (282)
T COG0421         148 EKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSP  193 (282)
T ss_pred             CcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence            3799999987532          45578999999999999995543

>PLN02823 spermine synthase

Probab=98.57  E-value=4.2e-07  Score=81.17  Aligned_cols=104  Identities=18%  Similarity=0.177  Sum_probs=79.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCeeEEE
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYDVIY  207 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~  207 (299)
                      ..++||.+|+|.|..+..+.+.  ..+++.+|+++.+++.+++.+..+... ....+++++.+|+..... ..++||+|+
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~-~~dprv~v~~~Da~~~L~~~~~~yDvIi  181 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREA-FCDKRLELIINDARAELEKRDEKFDVII  181 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccccc-ccCCceEEEEChhHHHHhhCCCCccEEE
Confidence            4579999999999999988876  356999999999999999987642111 235789999999886432 236799999


Q ss_pred             ecchh------------hhHHH-HHHHhccCCcEEEEEecC
Q psy7837         208 ISQAI------------RDIPW-HIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       208 ~~~~~------------~~~~~-~~~~~L~~gG~lv~~~~~  235 (299)
                      ++..-            ....+ .+.+.|+|||++++....
T Consensus       182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s  222 (336)
T PLN02823        182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGP  222 (336)
T ss_pred             ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccC
Confidence            98421            12344 678899999999987654

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.57  E-value=8.1e-07  Score=72.97  Aligned_cols=114  Identities=19%  Similarity=0.213  Sum_probs=76.9

Q ss_pred             HHHHHHHhccCCCCCE-EEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCC
Q psy7837          55 CLVLELLSGHLKYGDK-VLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGS  133 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~-vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~  133 (299)
                      ..+++.|...+..... |||||||+|..+.++++.+.. -+-.-.|.++......+..+...                  
T Consensus        12 ~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~-l~WqPSD~~~~~~~sI~a~~~~~------------------   72 (204)
T PF06080_consen   12 DPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPH-LTWQPSDPDDNLRPSIRAWIAEA------------------   72 (204)
T ss_pred             hHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCC-CEEcCCCCChHHHhhHHHHHHhc------------------
Confidence            4566666665665555 999999999999999998863 44556777777766666655541                  


Q ss_pred             eEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC-CC-------CCCCeeE
Q psy7837         134 KVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG-YP-------DAAPYDV  205 (299)
Q Consensus       134 ~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~-------~~~~fD~  205 (299)
                                                                     ....-...+..|+... ++       ...+||.
T Consensus        73 -----------------------------------------------~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~  105 (204)
T PF06080_consen   73 -----------------------------------------------GLPNVRPPLALDVSAPPWPWELPAPLSPESFDA  105 (204)
T ss_pred             -----------------------------------------------CCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence                                                           1111112233444432 11       2368999


Q ss_pred             EEecchhhh--------HHHHHHHhccCCcEEEEEec
Q psy7837         206 IYISQAIRD--------IPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       206 v~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~  234 (299)
                      |++.++++-        +...+.++|++||.|++.-+
T Consensus       106 i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGP  142 (204)
T PF06080_consen  106 IFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGP  142 (204)
T ss_pred             eeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence            999998763        44678899999999999754

The function of this family is unknown.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.55  E-value=2.3e-06  Score=81.03  Aligned_cols=103  Identities=22%  Similarity=0.125  Sum_probs=82.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC--CCCCCCCeeEE
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR--GYPDAAPYDVI  206 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~v  206 (299)
                      .+..+||||||.|.++..+|...  ..++|+|++...+..+.+.+..     ....|+.++..|+..  ...+.+++|.|
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~-----~~l~N~~~~~~~~~~~~~~~~~~sv~~i  421 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGE-----QNITNFLLFPNNLDLILNDLPNNSLDGI  421 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH-----cCCCeEEEEcCCHHHHHHhcCcccccEE
Confidence            46789999999999999999885  5699999999988888887766     467899988888652  23345789999


Q ss_pred             Eecchhh--------------hHHHHHHHhccCCcEEEEEecCCCC
Q psy7837         207 YISQAIR--------------DIPWHIVDQLKLGGRMLFIKGHEDD  238 (299)
Q Consensus       207 ~~~~~~~--------------~~~~~~~~~L~~gG~lv~~~~~~~~  238 (299)
                      +++.+-+              ...+.+.+.|+|||.+.+.+.....
T Consensus       422 ~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y  467 (506)
T PRK01544        422 YILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENY  467 (506)
T ss_pred             EEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHH
Confidence            9988743              3446899999999999998876543

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.54  E-value=1.7e-07  Score=81.44  Aligned_cols=42  Identities=36%  Similarity=0.482  Sum_probs=39.3

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHH
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMK  171 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~  171 (299)
                      .++++|||+|||||.+++..++.|+. |+++|+++.+++.+++
T Consensus       161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~e  203 (300)
T COG2264         161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARE  203 (300)
T ss_pred             cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHH
Confidence            36999999999999999999999986 9999999999999876

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.54  E-value=2.2e-07  Score=81.38  Aligned_cols=59  Identities=37%  Similarity=0.487  Sum_probs=51.2

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .+.+++.|....++|.+|||+|||||.++...++...  .+|+++|+++..++.++++...
T Consensus       148 T~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~  206 (295)
T PF06325_consen  148 TRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAEL  206 (295)
T ss_dssp             HHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHH
Confidence            4777888888889999999999999999998887643  5899999999999999999876

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.53  E-value=1.9e-06  Score=71.31  Aligned_cols=115  Identities=25%  Similarity=0.269  Sum_probs=81.5

Q ss_pred             chHHHHHHHHh-ccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccC
Q psy7837          52 SDHCLVLELLS-GHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLV  130 (299)
Q Consensus        52 ~~~~~~~~~l~-~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~  130 (299)
                      .+.+.++.-+. -.+++|.+||-+|+++|..-..++..++++|.||+++++++..+.-.....+                
T Consensus        57 KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~----------------  120 (229)
T PF01269_consen   57 KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK----------------  120 (229)
T ss_dssp             HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH----------------
T ss_pred             HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc----------------
Confidence            44455554443 3479999999999999999999999999999999999999876544433332                


Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC---CCCCeeEEE
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP---DAAPYDVIY  207 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~v~  207 (299)
                                                                          ..|+-.+..|+..+..   --+..|+|+
T Consensus       121 ----------------------------------------------------R~NIiPIl~DAr~P~~Y~~lv~~VDvI~  148 (229)
T PF01269_consen  121 ----------------------------------------------------RPNIIPILEDARHPEKYRMLVEMVDVIF  148 (229)
T ss_dssp             ----------------------------------------------------STTEEEEES-TTSGGGGTTTS--EEEEE
T ss_pred             ----------------------------------------------------CCceeeeeccCCChHHhhcccccccEEE
Confidence                                                                4689999999985321   125799999


Q ss_pred             ecchhh----hHHHHHHHhccCCcEEEEEec
Q psy7837         208 ISQAIR----DIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       208 ~~~~~~----~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      ++-.-.    -+..++...||+||.+++...
T Consensus       149 ~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iK  179 (229)
T PF01269_consen  149 QDVAQPDQARIAALNARHFLKPGGHLIISIK  179 (229)
T ss_dssp             EE-SSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ecCCChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence            986543    344678889999999998864

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PRK00536 speE spermidine synthase; Provisional

Probab=98.53  E-value=9.7e-07  Score=75.90  Aligned_cols=104  Identities=14%  Similarity=0.004  Sum_probs=79.7

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS  209 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  209 (299)
                      ...++||-+|.|.|....++.+...+|+.+|+++.+++.+++-+..... .....+++++.. ...  ...++||+|+++
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~-~~~DpRv~l~~~-~~~--~~~~~fDVIIvD  146 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHE-VKNNKNFTHAKQ-LLD--LDIKKYDLIICL  146 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHH-hhcCCCEEEeeh-hhh--ccCCcCCEEEEc
Confidence            3468999999999999999999977999999999999999996554211 134567777752 111  112679999999


Q ss_pred             chh-hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         210 QAI-RDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       210 ~~~-~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      ... ....+.+.+.|+|||+++....++.
T Consensus       147 s~~~~~fy~~~~~~L~~~Gi~v~Qs~sp~  175 (262)
T PRK00536        147 QEPDIHKIDGLKRMLKEDGVFISVAKHPL  175 (262)
T ss_pred             CCCChHHHHHHHHhcCCCcEEEECCCCcc
Confidence            544 4566789999999999999876554

>KOG2187|consensus

Probab=98.50  E-value=5.5e-07  Score=82.43  Aligned_cols=118  Identities=16%  Similarity=0.146  Sum_probs=92.4

Q ss_pred             hHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCC
Q psy7837         115 KAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGR  194 (299)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  194 (299)
                      .++.+++.+...+.+..+..++|+.||||.+++.+++...+|+|+|+++..++.|+.|++.     ++..|.+|+++-+.
T Consensus       367 ~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~-----NgisNa~Fi~gqaE  441 (534)
T KOG2187|consen  367 AAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQI-----NGISNATFIVGQAE  441 (534)
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchh-----cCccceeeeecchh
Confidence            4678889999999999999999999999999999999999999999999999999999999     58899999999555


Q ss_pred             CCCC---CC--CCee-EEEecchhhh----HHHHHHHhccCCcEEEEEecCCC
Q psy7837         195 RGYP---DA--APYD-VIYISQAIRD----IPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       195 ~~~~---~~--~~fD-~v~~~~~~~~----~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      +...   ..  ++=+ +++++.+-..    +...+.+.-++--.+++++..+.
T Consensus       442 ~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~t  494 (534)
T KOG2187|consen  442 DLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPHT  494 (534)
T ss_pred             hccchhcccCCCCCceEEEECCCcccccHHHHHHHHhccCccceEEEEcCHHH
Confidence            4222   11  2345 5666665432    23344444447778888887664

>KOG1975|consensus

Probab=98.50  E-value=6.2e-07  Score=77.46  Aligned_cols=111  Identities=20%  Similarity=0.145  Sum_probs=82.6

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHHHHHhcC-CcccCCCCeEEEEcCCCC-----CC-C
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGA-PAIALAENFEFVCADGRR-----GY-P  198 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~~~-~~~~~~~~v~~~~~d~~~-----~~-~  198 (299)
                      ....++..++|+|||-|.-.+-+-+.|.. ++++|+.+..++.|+++.+..- ......-.+.|+.+|...     .. +
T Consensus       113 ~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~  192 (389)
T KOG1975|consen  113 LYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF  192 (389)
T ss_pred             HHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence            34577899999999999999888888865 9999999999999999876520 000011247889998762     12 2


Q ss_pred             CCCCeeEEEecchhh----------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837         199 DAAPYDVIYISQAIR----------DIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       199 ~~~~fD~v~~~~~~~----------~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      ...+||+|=|..++|          .+..++.+.|+|||.++-.+|...
T Consensus       193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd  241 (389)
T KOG1975|consen  193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD  241 (389)
T ss_pred             CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence            223499998887764          244688999999999999887654

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.49  E-value=4.4e-07  Score=74.95  Aligned_cols=105  Identities=18%  Similarity=0.250  Sum_probs=64.4

Q ss_pred             CCCeEEEEcCCCcH----HHHHHHH-----cC--CeEEEEeCChHHHHHHHHHH--------------HhcC-Cccc---
Q psy7837         131 YGSKVLDIGSGSGY----LSALFAY-----MG--AKVYAIEHVKNLCKRAMKNI--------------RRGA-PAIA---  181 (299)
Q Consensus       131 ~~~~vLDiG~G~G~----~~~~la~-----~~--~~v~~~D~~~~~~~~a~~~~--------------~~~~-~~~~---  181 (299)
                      +.-+|+..||++|.    +++.+..     .+  .+++|+|+|+.+++.|++-.              +++- ...+   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            45699999999994    3333333     12  47999999999999998632              1100 0000   


Q ss_pred             -----CCCCeEEEEcCCCCCCCCCCCeeEEEecchhh--------hHHHHHHHhccCCcEEEEEecC
Q psy7837         182 -----LAENFEFVCADGRRGYPDAAPYDVIYISQAIR--------DIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       182 -----~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~--------~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                           ...++.|...|..+..+..+.||+|+|.+++.        .+.+.+++.|+|||.|++....
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE  177 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSE  177 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCc
Confidence                 12578999999888444457899999999974        4557899999999999997654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.47  E-value=1.5e-06  Score=75.90  Aligned_cols=153  Identities=18%  Similarity=0.198  Sum_probs=89.0

Q ss_pred             ccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCH----HHHHHHHHhCC---CceEEEEeCCHHHHHHHHHHHHHh
Q psy7837          43 GHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGY----LTTLFGAMVGI---SGKVYTIEHIPELLEAARKRVKAK  115 (299)
Q Consensus        43 ~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~----~~~~la~~~~~---~g~v~~~d~~~~~~~~a~~~l~~~  115 (299)
                      ....+...|.....+.+.+... .+.-+|+.+||++|.    +++.+.+..+.   +-+++|.|++...++.|++.....
T Consensus        92 neT~FFRd~~~f~~L~~~~~~~-~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~  170 (287)
T PRK10611         92 NLTAFFREAHHFPILAEHARRR-SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQ  170 (287)
T ss_pred             CCCCccCCcHHHHHHHHHHHhc-CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCH
Confidence            3344555555555555544322 223689999999994    34444443322   357999999999999999886441


Q ss_pred             HHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcC---CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcC
Q psy7837         116 AETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMG---AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCAD  192 (299)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  192 (299)
                       ..+.. +..                 ......+.+.+   ...+-  +.+                 .....+.|...|
T Consensus       171 -~~~r~-~p~-----------------~~~~ryF~~~~~~~~~~~~--v~~-----------------~lr~~V~F~~~N  212 (287)
T PRK10611        171 -EELKT-LSP-----------------QQLQRYFMRGTGPHEGLVR--VRQ-----------------ELANYVDFQQLN  212 (287)
T ss_pred             -HHHhc-CCH-----------------HHHHHHcccccCCCCceEE--ECh-----------------HHHccCEEEccc
Confidence             00000 000                 00000000000   00000  001                 123578999999


Q ss_pred             CCCC-CCCCCCeeEEEecchhhh--------HHHHHHHhccCCcEEEEEec
Q psy7837         193 GRRG-YPDAAPYDVIYISQAIRD--------IPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       193 ~~~~-~~~~~~fD~v~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~  234 (299)
                      .... ++..+.||+|+|.+++..        +.+.+.+.|+|||.|++...
T Consensus       213 L~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~s  263 (287)
T PRK10611        213 LLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHS  263 (287)
T ss_pred             CCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence            8863 333478999999888743        44689999999999887654

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.45  E-value=5.5e-07  Score=67.38  Aligned_cols=47  Identities=32%  Similarity=0.605  Sum_probs=41.7

Q ss_pred             CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          67 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        67 ~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ||.+|||+|||+|.++..+++... ..+++++|+++.+++.++++...
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~   47 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAE   47 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHh
Confidence            689999999999999999999443 46899999999999999999843

...

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.44  E-value=9.3e-07  Score=76.27  Aligned_cols=51  Identities=31%  Similarity=0.230  Sum_probs=46.1

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHH
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNI  173 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~  173 (299)
                      +....++.+|++|||||||.|.+++.+|+. +.+|+|+++|+++.+.+++++
T Consensus        64 ~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~  115 (283)
T COG2230          64 ILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRI  115 (283)
T ss_pred             HHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHH
Confidence            445668899999999999999999999987 899999999999999998873

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.44  E-value=8.3e-07  Score=80.45  Aligned_cols=97  Identities=19%  Similarity=0.124  Sum_probs=79.4

Q ss_pred             CCeEEEEcCCCcHHHHHHHHc--CC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC-CCCeeEEE
Q psy7837         132 GSKVLDIGSGSGYLSALFAYM--GA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD-AAPYDVIY  207 (299)
Q Consensus       132 ~~~vLDiG~G~G~~~~~la~~--~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~  207 (299)
                      +-+|||+.||+|..++.+++.  |. .|+++|+++.+++.+++|++.|     ...+++++++|+...... ...||+|+
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N-----~~~~~~v~~~Da~~~l~~~~~~fDvId  119 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN-----SVENIEVPNEDAANVLRYRNRKFHVID  119 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh-----CCCcEEEEchhHHHHHHHhCCCCCEEE
Confidence            358999999999999999987  54 6999999999999999999884     455788999998754322 25699999


Q ss_pred             ecchhh--hHHHHHHHhccCCcEEEEEe
Q psy7837         208 ISQAIR--DIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       208 ~~~~~~--~~~~~~~~~L~~gG~lv~~~  233 (299)
                      +++.-.  .+.+.+.+.+++||.|++..
T Consensus       120 lDPfGs~~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       120 IDPFGTPAPFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             eCCCCCcHHHHHHHHHhcccCCEEEEEe
Confidence            988322  46678889999999999983

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.43  E-value=4.2e-07  Score=83.29  Aligned_cols=116  Identities=16%  Similarity=0.185  Sum_probs=75.3

Q ss_pred             hHHHHHHHHhhhccc--CCC--CeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEE
Q psy7837         115 KAETYIKRINFYGHL--VYG--SKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVC  190 (299)
Q Consensus       115 ~~~~~~~~~~~~~~~--~~~--~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  190 (299)
                      ++.+|++.|..+...  ..+  ..+||+|||+|+++..+..++..+.++-.....-...+-.+++     +...-+. +.
T Consensus        97 Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR-----Gvpa~~~-~~  170 (506)
T PF03141_consen   97 GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER-----GVPAMIG-VL  170 (506)
T ss_pred             CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc-----Ccchhhh-hh
Confidence            445555555555544  333  4799999999999999999998877776654433333333333     2211111 11


Q ss_pred             cCCCCCCCCCCCeeEEEecchhhhHH-------HHHHHhccCCcEEEEEecCCC
Q psy7837         191 ADGRRGYPDAAPYDVIYISQAIRDIP-------WHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       191 ~d~~~~~~~~~~fD~v~~~~~~~~~~-------~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      + ....+.+.+.||+|.|..++....       -++-|+|+|||.++++.++..
T Consensus       171 ~-s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~  223 (506)
T PF03141_consen  171 G-SQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY  223 (506)
T ss_pred             c-cccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc
Confidence            1 123455568999999988764322       378999999999999988755

; GO: 0008168 methyltransferase activity

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.43  E-value=4.3e-07  Score=79.01  Aligned_cols=84  Identities=29%  Similarity=0.346  Sum_probs=51.6

Q ss_pred             cccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCH
Q psy7837          23 FMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP  102 (299)
Q Consensus        23 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~  102 (299)
                      |..+.+.|.+..|.+....+...|.    +....+++.+.  +++|++|||||||.|.++..+++..|  .+|+|+.+++
T Consensus        24 ~Ld~~m~YS~~~~~~~~~~Le~AQ~----~k~~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~   95 (273)
T PF02353_consen   24 FLDPTMKYSCAYFDEGDDTLEEAQE----RKLDLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLSE   95 (273)
T ss_dssp             TS-TT---S----SSTT--HHHHHH----HHHHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-H
T ss_pred             hcCCCCCCCCeecCCchhhHHHHHH----HHHHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECCH
Confidence            4454566777777775555554441    22344444444  89999999999999999999999874  4899999999


Q ss_pred             HHHHHHHHHHHH
Q psy7837         103 ELLEAARKRVKA  114 (299)
Q Consensus       103 ~~~~~a~~~l~~  114 (299)
                      ...+.+++.+.+
T Consensus        96 ~Q~~~a~~~~~~  107 (273)
T PF02353_consen   96 EQAEYARERIRE  107 (273)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            999999999886

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.41  E-value=3.3e-06  Score=83.15  Aligned_cols=117  Identities=21%  Similarity=0.184  Sum_probs=85.4

Q ss_pred             HHHHHHHhhhccc-CCCCeEEEEcCCCcHHHHHHHHc-------------------------------------------
Q psy7837         117 ETYIKRINFYGHL-VYGSKVLDIGSGSGYLSALFAYM-------------------------------------------  152 (299)
Q Consensus       117 ~~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~la~~-------------------------------------------  152 (299)
                      +.+...+..++.. .++..++|.+||+|.+.++.+..                                           
T Consensus       175 etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~  254 (702)
T PRK11783        175 ENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE  254 (702)
T ss_pred             HHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence            3555556566665 56889999999999999987652                                           


Q ss_pred             -CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC--CCCeeEEEecchhh----------hHHHHH
Q psy7837         153 -GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD--AAPYDVIYISQAIR----------DIPWHI  219 (299)
Q Consensus       153 -~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~v~~~~~~~----------~~~~~~  219 (299)
                       ...++|+|+++.+++.|++|+..+    +....+.+.++|+......  .++||+|++|+++-          .+...+
T Consensus       255 ~~~~i~G~Did~~av~~A~~N~~~~----g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~l  330 (702)
T PRK11783        255 LPSKFYGSDIDPRVIQAARKNARRA----GVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQL  330 (702)
T ss_pred             cCceEEEEECCHHHHHHHHHHHHHc----CCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHH
Confidence             125899999999999999999984    3445789999998764322  25799999998862          121222


Q ss_pred             ---HHhccCCcEEEEEecCCC
Q psy7837         220 ---VDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       220 ---~~~L~~gG~lv~~~~~~~  237 (299)
                         .+...+|+.+++.++...
T Consensus       331 g~~lk~~~~g~~~~llt~~~~  351 (702)
T PRK11783        331 GRRLKQQFGGWNAALFSSSPE  351 (702)
T ss_pred             HHHHHHhCCCCeEEEEeCCHH
Confidence               333348999988877654

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.41  E-value=1e-06  Score=72.79  Aligned_cols=102  Identities=20%  Similarity=0.269  Sum_probs=71.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHH-HcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837         131 YGSKVLDIGSGSGYLSALFA-YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS  209 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  209 (299)
                      ...++||.|+|-|+.+..+. .....|-.+|.++..++.|++.+..     ......++.+....+..++.++||+|++.
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~-----~~~~v~~~~~~gLQ~f~P~~~~YDlIW~Q  129 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGK-----DNPRVGEFYCVGLQDFTPEEGKYDLIWIQ  129 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCC-----GGCCEEEEEES-GGG----TT-EEEEEEE
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcc-----cCCCcceEEecCHhhccCCCCcEeEEEeh
Confidence            45799999999999998664 5566799999999999999987644     23345667777666655666799999998


Q ss_pred             chhhhHH--------HHHHHhccCCcEEEEEecCCC
Q psy7837         210 QAIRDIP--------WHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       210 ~~~~~~~--------~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      -++-++.        .++...|+|+|.+++-.+...
T Consensus       130 W~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~  165 (218)
T PF05891_consen  130 WCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSS  165 (218)
T ss_dssp             S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred             HhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCC
Confidence            8775443        588999999999999866543

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.41  E-value=1.7e-06  Score=74.56  Aligned_cols=127  Identities=19%  Similarity=0.243  Sum_probs=82.5

Q ss_pred             CCEEEEEccCCC----HHHHHHHHHhCC----CceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEc
Q psy7837          68 GDKVLEIGTGSG----YLTTLFGAMVGI----SGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIG  139 (299)
Q Consensus        68 g~~vldiG~G~G----~~~~~la~~~~~----~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG  139 (299)
                      .-+|+.+||++|    .+++.+.+..+.    .-+++|.|++...++.|+.......+..                    
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~--------------------  156 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELL--------------------  156 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhh--------------------
Confidence            458899999999    455556666643    5689999999999999987764410000                    


Q ss_pred             CCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCc-----ccCCCCeEEEEcCCCCCCCCCCCeeEEEecchh--
Q psy7837         140 SGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPA-----IALAENFEFVCADGRRGYPDAAPYDVIYISQAI--  212 (299)
Q Consensus       140 ~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~-----~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~--  212 (299)
                                         .+++++..+   +-+.+.+.+     ......|.|...|.....+..+.||+|+|.+++  
T Consensus       157 -------------------~~~~~~~~~---ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIY  214 (268)
T COG1352         157 -------------------RGLPPELLR---RYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIY  214 (268)
T ss_pred             -------------------ccCCHHHHh---hhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEe
Confidence                               001111110   000000000     013357899999988655344779999999987  


Q ss_pred             ------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         213 ------RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       213 ------~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                            ..+.+.++..|+|||.|++-....
T Consensus       215 Fd~~~q~~il~~f~~~L~~gG~LflG~sE~  244 (268)
T COG1352         215 FDEETQERILRRFADSLKPGGLLFLGHSET  244 (268)
T ss_pred             eCHHHHHHHHHHHHHHhCCCCEEEEccCcc
Confidence                  356678999999999999976543

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.40  E-value=3.4e-06  Score=72.42  Aligned_cols=106  Identities=20%  Similarity=0.206  Sum_probs=80.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC-CC-CeeEE
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD-AA-PYDVI  206 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~-~fD~v  206 (299)
                      ..++||-||.|.|..+..+.+..  .+++.+|+++..++.+++-+...... ....+++++.+|+...... .+ +||+|
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~-~~d~r~~i~~~Dg~~~l~~~~~~~yDvI  154 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG-LDDPRVRIIIGDGRKFLKETQEEKYDVI  154 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT-GGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc-cCCCceEEEEhhhHHHHHhccCCcccEE
Confidence            58899999999999999999885  67999999999999999977642110 2346999999998743221 13 79999


Q ss_pred             Eecchh----------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         207 YISQAI----------RDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       207 ~~~~~~----------~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      +++..-          ....+.+.+.|+|||.+++......
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~  195 (246)
T PF01564_consen  155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPF  195 (246)
T ss_dssp             EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred             EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcc
Confidence            987653          2455789999999999999875443

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.40  E-value=1.3e-06  Score=76.47  Aligned_cols=105  Identities=21%  Similarity=0.320  Sum_probs=83.6

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY  144 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~  144 (299)
                      ..+|+.|||+++++|.-|..+++.+...|.+++.|++..-+...++++.+                              
T Consensus        83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r------------------------------  132 (283)
T PF01189_consen   83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKR------------------------------  132 (283)
T ss_dssp             TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHH------------------------------
T ss_pred             ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHh------------------------------
Confidence            88999999999999999999999999889999999999888888888877                              


Q ss_pred             HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCCCCeeEEEecchhh---------
Q psy7837         145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDAAPYDVIYISQAIR---------  213 (299)
Q Consensus       145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~~~~~~---------  213 (299)
                                                          .+..++.....|.....  .....||.|+++++..         
T Consensus       133 ------------------------------------~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p  176 (283)
T PF01189_consen  133 ------------------------------------LGVFNVIVINADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNP  176 (283)
T ss_dssp             ------------------------------------TT-SSEEEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCT
T ss_pred             ------------------------------------cCCceEEEEeeccccccccccccccchhhcCCCccchhhhhhcc
Confidence                                                46667777777766431  1223599999988631         


Q ss_pred             -------------------hHHHHHHHhc----cCCcEEEEEecC
Q psy7837         214 -------------------DIPWHIVDQL----KLGGRMLFIKGH  235 (299)
Q Consensus       214 -------------------~~~~~~~~~L----~~gG~lv~~~~~  235 (299)
                                         .+.+.+.+.+    +|||+++.++-+
T Consensus       177 ~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS  221 (283)
T PF01189_consen  177 DIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS  221 (283)
T ss_dssp             THHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred             chhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence                               2335788899    999999998754

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.40  E-value=1.2e-05  Score=69.43  Aligned_cols=59  Identities=34%  Similarity=0.490  Sum_probs=48.8

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ...+++.+...+.++.+|||+|||+|.++..+++. +. .+++++|+++.+++.+++++..
T Consensus       106 t~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g~-~~v~giDis~~~l~~A~~n~~~  164 (250)
T PRK00517        106 TRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-GA-KKVLAVDIDPQAVEAARENAEL  164 (250)
T ss_pred             HHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHH
Confidence            35567777666789999999999999999877654 43 4699999999999999998876

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.39  E-value=8.7e-07  Score=77.54  Aligned_cols=61  Identities=23%  Similarity=0.306  Sum_probs=53.0

Q ss_pred             cchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          51 PSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        51 p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      |=+...+++.|.  +++|..++|++||.|..|..+++.+++.++|+|+|.++.+++.+++.+.
T Consensus         5 pVll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~   65 (296)
T PRK00050          5 PVLLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK   65 (296)
T ss_pred             cccHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc
Confidence            345567777776  7899999999999999999999999878999999999999999987663

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.38  E-value=1.4e-06  Score=69.23  Aligned_cols=49  Identities=29%  Similarity=0.483  Sum_probs=43.9

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.+.+|||+|||+|.++..+++..++.++++++|+++.+++.++..+..
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~   50 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKE   50 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccc
Confidence            4678999999999999999998777788999999999999999998876

...

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.37  E-value=2.7e-06  Score=69.66  Aligned_cols=94  Identities=18%  Similarity=0.143  Sum_probs=59.9

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCC
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAP  202 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  202 (299)
                      |..+....+...|.|+|||.+.++..+ ..+..|...|+..                    .+-.++.+|+...+.+.++
T Consensus        64 I~~l~~~~~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva--------------------~n~~Vtacdia~vPL~~~s  122 (219)
T PF05148_consen   64 IEWLKKRPKSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVA--------------------PNPRVTACDIANVPLEDES  122 (219)
T ss_dssp             HHHHCTS-TTS-EEEES-TT-HHHHH---S---EEEEESS---------------------SSTTEEES-TTS-S--TT-
T ss_pred             HHHHHhcCCCEEEEECCCchHHHHHhc-ccCceEEEeeccC--------------------CCCCEEEecCccCcCCCCc
Confidence            344444555679999999999998554 3456799999743                    3445788999887778899


Q ss_pred             eeEEEecchh-----hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         203 YDVIYISQAI-----RDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       203 fD~v~~~~~~-----~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      .|++++-..+     .....++.|+||+||.|.|.....+
T Consensus       123 vDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SR  162 (219)
T PF05148_consen  123 VDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSR  162 (219)
T ss_dssp             EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG
T ss_pred             eeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEeccc
Confidence            9999875554     4566899999999999999865543

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.36  E-value=2.1e-06  Score=69.25  Aligned_cols=107  Identities=22%  Similarity=0.238  Sum_probs=83.7

Q ss_pred             HHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC
Q psy7837         121 KRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD  199 (299)
Q Consensus       121 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  199 (299)
                      ..+......-.+++|||+|+|+|..++..++.|+. |++.|+.+.....++.|++.|      ..++.+...|...   .
T Consensus        69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~an------gv~i~~~~~d~~g---~  139 (218)
T COG3897          69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAAN------GVSILFTHADLIG---S  139 (218)
T ss_pred             HHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhc------cceeEEeeccccC---C
Confidence            34666667788999999999999999999999876 999999999999999998874      3677888877655   2


Q ss_pred             CCCeeEEEecchhh------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837         200 AAPYDVIYISQAIR------DIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       200 ~~~fD~v~~~~~~~------~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      ...||+++....+.      .+.+ +...|+..|..++...+.+
T Consensus       140 ~~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R  182 (218)
T COG3897         140 PPAFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGR  182 (218)
T ss_pred             CcceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence            35699999887652      2223 7777888887777665554

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.35  E-value=2.7e-06  Score=70.61  Aligned_cols=64  Identities=22%  Similarity=0.375  Sum_probs=51.1

Q ss_pred             cCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          48 MESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        48 ~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ++.+.....+++.+.  +.++++|||+|||+|.++..+++.. +.++++++|+++.+++.+++++..
T Consensus        23 ~t~~~v~~~l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~   86 (196)
T PRK07402         23 LTKREVRLLLISQLR--LEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDR   86 (196)
T ss_pred             CCHHHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH
Confidence            333444445566664  7889999999999999999998654 458999999999999999998865

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=98.34  E-value=2.6e-06  Score=70.14  Aligned_cols=64  Identities=22%  Similarity=0.325  Sum_probs=51.7

Q ss_pred             cCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          48 MESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        48 ~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ++.+...+.+++.+.  +.++.+|||+|||+|.++..+++.. +.++++++|+++.+++.+++++..
T Consensus        14 ~~~~~~r~~~~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~   77 (187)
T PRK08287         14 MTKEEVRALALSKLE--LHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQR   77 (187)
T ss_pred             CchHHHHHHHHHhcC--CCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence            334444455556665  6789999999999999999998874 458999999999999999988765

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=1.7e-06  Score=71.23  Aligned_cols=48  Identities=38%  Similarity=0.612  Sum_probs=44.0

Q ss_pred             hhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHH
Q psy7837         125 FYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       125 ~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~  172 (299)
                      ....+.++.+|||||||||+.+..+++...+|+++|..+.+.+.|++|
T Consensus        66 ~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~  113 (209)
T COG2518          66 QLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRN  113 (209)
T ss_pred             HHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHH
Confidence            345678899999999999999999999988999999999999999876

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.30  E-value=5.7e-06  Score=73.69  Aligned_cols=110  Identities=22%  Similarity=0.159  Sum_probs=73.9

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHHHHHH---------cCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCC
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSALFAY---------MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADG  193 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~---------~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  193 (299)
                      +..+....++.+|+|..||+|.+...+.+         ....++|+|+++.++..++-++.-.+   ....+..+..+|.
T Consensus        38 ~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~---~~~~~~~i~~~d~  114 (311)
T PF02384_consen   38 MVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG---IDNSNINIIQGDS  114 (311)
T ss_dssp             HHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT---HHCBGCEEEES-T
T ss_pred             HHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc---ccccccccccccc
Confidence            33344556778999999999999988766         35679999999999999988775421   1233456888887


Q ss_pred             CCCCCC--CCCeeEEEecchhh---------------------------hHHHHHHHhccCCcEEEEEecC
Q psy7837         194 RRGYPD--AAPYDVIYISQAIR---------------------------DIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       194 ~~~~~~--~~~fD~v~~~~~~~---------------------------~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ......  ...||+|++++++.                           .+...+.+.|++||++.+..+.
T Consensus       115 l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~  185 (311)
T PF02384_consen  115 LENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN  185 (311)
T ss_dssp             TTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred             ccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence            643222  36899999998752                           1224678999999998887764

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=98.28  E-value=7.4e-07  Score=78.89  Aligned_cols=159  Identities=19%  Similarity=0.131  Sum_probs=112.4

Q ss_pred             cCCCCCEEEE----EccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH------Hh-----HHHH-------HH
Q psy7837          64 HLKYGDKVLE----IGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK------AK-----AETY-------IK  121 (299)
Q Consensus        64 ~~~~g~~vld----iG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~------~~-----~~~~-------~~  121 (299)
                      .++.||+|.-    .+||.+..|..-.+.++++.++++++.+-.+.+...-.-.      ..     +-++       ++
T Consensus        78 ~~k~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~~gy~~~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaGiT~y~  157 (339)
T COG1064          78 GLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGYTTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYR  157 (339)
T ss_pred             cCCCCCEEEecCccCCCCCCccccCcccccCCCccccceeecCcceeEEEEchHHeEECCCCCChhhhhhhhcCeeeEee
Confidence            3788999854    6999999999888889988889999877766554322100      00     0011       12


Q ss_pred             HHhhhcccCCCCeEEEEcCC-CcHHHHHHHH-cCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEc-CCCCCCC
Q psy7837         122 RINFYGHLVYGSKVLDIGSG-SGYLSALFAY-MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA-DGRRGYP  198 (299)
Q Consensus       122 ~~~~~~~~~~~~~vLDiG~G-~G~~~~~la~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~  198 (299)
                      .+. .....||++|+-+|+| .|..+.++++ +|++|+++|.+++-.+.|++.-..           .++.. |......
T Consensus       158 alk-~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd-----------~~i~~~~~~~~~~  225 (339)
T COG1064         158 ALK-KANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD-----------HVINSSDSDALEA  225 (339)
T ss_pred             ehh-hcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc-----------EEEEcCCchhhHH
Confidence            222 2577899999999998 5567777887 699999999999999999875211           12222 2111111


Q ss_pred             CCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecC
Q psy7837         199 DAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       199 ~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      -.+.||+|+...+ ....+...+.|++||++++.-.+
T Consensus       226 ~~~~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         226 VKEIADAIIDTVG-PATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             hHhhCcEEEECCC-hhhHHHHHHHHhcCCEEEEECCC
Confidence            1123999999888 88889999999999999998665

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.26  E-value=3e-06  Score=73.94  Aligned_cols=64  Identities=25%  Similarity=0.256  Sum_probs=53.4

Q ss_pred             ccc-ccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Q psy7837          44 HNA-FMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV  112 (299)
Q Consensus        44 ~~~-~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l  112 (299)
                      .|| ...++.+...+++.+.  +.++++|||+|||+|.++..+++...   +++++|+++.+++.+++++
T Consensus        20 ~gq~fl~~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~   84 (272)
T PRK00274         20 LGQNFLIDENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETF   84 (272)
T ss_pred             cCcCcCCCHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhh
Confidence            455 4456677778888775  78999999999999999999998853   7999999999999988765

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.25  E-value=8.9e-06  Score=66.87  Aligned_cols=39  Identities=23%  Similarity=0.487  Sum_probs=35.6

Q ss_pred             cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCH
Q psy7837          64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP  102 (299)
Q Consensus        64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~  102 (299)
                      -+++|..|+|+|+.+|.|++++++.+++.+.|+++|+.+
T Consensus        42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p   80 (205)
T COG0293          42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP   80 (205)
T ss_pred             eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence            468999999999999999999999999988899999754

>KOG1122|consensus

Probab=98.23  E-value=1.3e-05  Score=71.94  Aligned_cols=106  Identities=16%  Similarity=0.243  Sum_probs=84.8

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY  144 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~  144 (299)
                      .+||++|||.++.+|.-|.++|..+..+|.+++.|.+..-+.....++.+                              
T Consensus       239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~r------------------------------  288 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHR------------------------------  288 (460)
T ss_pred             CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHH------------------------------
Confidence            68999999999999999999999999999999999999888888888877                              


Q ss_pred             HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---CCCCCeeEEEecchhhh-------
Q psy7837         145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---PDAAPYDVIYISQAIRD-------  214 (299)
Q Consensus       145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~v~~~~~~~~-------  214 (299)
                                                          .+..+..+...|....+   .. ++||.|+.+++...       
T Consensus       289 ------------------------------------lGv~ntiv~n~D~~ef~~~~~~-~~fDRVLLDAPCSGtgvi~K~  331 (460)
T KOG1122|consen  289 ------------------------------------LGVTNTIVSNYDGREFPEKEFP-GSFDRVLLDAPCSGTGVISKD  331 (460)
T ss_pred             ------------------------------------hCCCceEEEccCcccccccccC-cccceeeecCCCCCCcccccc
Confidence                                                35667777777776432   22 37999999887431       


Q ss_pred             ---------------------HHHHHHHhccCCcEEEEEecCCC
Q psy7837         215 ---------------------IPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       215 ---------------------~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                                           +......++++||+||.++-+..
T Consensus       332 ~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~  375 (460)
T KOG1122|consen  332 QSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT  375 (460)
T ss_pred             cccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence                                 22356789999999999875543

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.23  E-value=1.1e-05  Score=67.23  Aligned_cols=96  Identities=26%  Similarity=0.268  Sum_probs=77.7

Q ss_pred             CCeEEEEcCCCcHHHHHHHH--cCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCC-eeEEEe
Q psy7837         132 GSKVLDIGSGSGYLSALFAY--MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAP-YDVIYI  208 (299)
Q Consensus       132 ~~~vLDiG~G~G~~~~~la~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~  208 (299)
                      +.+++|||+|.|.-++.++-  ...+|+-+|....-+...+.....     .+..|++++++.+...... .. ||+|.+
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~e-----L~L~nv~i~~~RaE~~~~~-~~~~D~vts  141 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKE-----LGLENVEIVHGRAEEFGQE-KKQYDVVTS  141 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHH-----hCCCCeEEehhhHhhcccc-cccCcEEEe
Confidence            68999999999999998773  366699999998888888877777     6788999999998875433 23 999999


Q ss_pred             cchh--hhHHHHHHHhccCCcEEEEEe
Q psy7837         209 SQAI--RDIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       209 ~~~~--~~~~~~~~~~L~~gG~lv~~~  233 (299)
                      .++.  ..+.+-+..++++||.+++.-
T Consensus       142 RAva~L~~l~e~~~pllk~~g~~~~~k  168 (215)
T COG0357         142 RAVASLNVLLELCLPLLKVGGGFLAYK  168 (215)
T ss_pred             ehccchHHHHHHHHHhcccCCcchhhh
Confidence            8764  556678889999999876543

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.23  E-value=4.8e-06  Score=69.58  Aligned_cols=45  Identities=42%  Similarity=0.605  Sum_probs=39.7

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~  172 (299)
                      ...++.+|||+|||+|+.+..+++.   +.+|+++|+++++++.++++
T Consensus        69 ~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~  116 (205)
T PRK13944         69 EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQN  116 (205)
T ss_pred             CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH
Confidence            4567899999999999999988875   36899999999999999876

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.22  E-value=9.4e-06  Score=63.83  Aligned_cols=98  Identities=16%  Similarity=0.185  Sum_probs=76.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCC---eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-----CCCC
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGA---KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-----PDAA  201 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~  201 (299)
                      ..|.-|||+|.|+|.++..+.++|.   .++++|.|+.......+..          ..+.++.||+....     ....
T Consensus        47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~----------p~~~ii~gda~~l~~~l~e~~gq  116 (194)
T COG3963          47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY----------PGVNIINGDAFDLRTTLGEHKGQ  116 (194)
T ss_pred             ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC----------CCccccccchhhHHHHHhhcCCC
Confidence            4588999999999999999998864   4999999999998888764          34558888876421     2335


Q ss_pred             CeeEEEecchhh--------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837         202 PYDVIYISQAIR--------DIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       202 ~fD~v~~~~~~~--------~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      .||.|++.-++.        .+.+.+...|..||.++.....+.
T Consensus       117 ~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~  160 (194)
T COG3963         117 FFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPL  160 (194)
T ss_pred             eeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence            699999988764        344788899999999998776643

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.20  E-value=9.3e-06  Score=71.49  Aligned_cols=43  Identities=37%  Similarity=0.451  Sum_probs=39.2

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHH
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~  172 (299)
                      .++.+|||+|||+|.++..+++.|. +|+++|+++.+++.+++|
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n  201 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKN  201 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHH
Confidence            4579999999999999999988875 699999999999999887

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK10742 putative methyltransferase; Provisional

Probab=98.20  E-value=6e-06  Score=69.87  Aligned_cols=87  Identities=20%  Similarity=0.250  Sum_probs=67.9

Q ss_pred             ccCCCC--eEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhc-CCcccC---CCCeEEEEcCCCCCCCC-C
Q psy7837         128 HLVYGS--KVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRG-APAIAL---AENFEFVCADGRRGYPD-A  200 (299)
Q Consensus       128 ~~~~~~--~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~---~~~v~~~~~d~~~~~~~-~  200 (299)
                      .+.++.  +|||+-+|+|..++.++.+|++|+++|.++.+....+.++++. ......   ..+++++.+|....+.. .
T Consensus        83 glk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~  162 (250)
T PRK10742         83 GIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT  162 (250)
T ss_pred             CCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC
Confidence            445566  9999999999999999999999999999999999999988872 100001   25789999998753321 2


Q ss_pred             CCeeEEEecchhhh
Q psy7837         201 APYDVIYISQAIRD  214 (299)
Q Consensus       201 ~~fD~v~~~~~~~~  214 (299)
                      .+||+|++++++.+
T Consensus       163 ~~fDVVYlDPMfp~  176 (250)
T PRK10742        163 PRPQVVYLDPMFPH  176 (250)
T ss_pred             CCCcEEEECCCCCC
Confidence            46999999999854

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.20  E-value=2.4e-05  Score=74.72  Aligned_cols=70  Identities=17%  Similarity=0.181  Sum_probs=47.2

Q ss_pred             cccccCCcchHHHHHHHHhccCC-----CCCEEEEEccCCCHHHHHHHHHhCC-------CceEEEEeCCHHHHHHHHHH
Q psy7837          44 HNAFMESPSDHCLVLELLSGHLK-----YGDKVLEIGTGSGYLTTLFGAMVGI-------SGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        44 ~~~~~~~p~~~~~~~~~l~~~~~-----~g~~vldiG~G~G~~~~~la~~~~~-------~g~v~~~d~~~~~~~~a~~~  111 (299)
                      .|+....+.+...|++.+.....     ...+|||.+||+|.+...+++.+..       .-.++++|+++..+..++.+
T Consensus         3 ~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~   82 (524)
T TIGR02987         3 YGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL   82 (524)
T ss_pred             CcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence            47777888888888888754322     4468999999999998888776531       12455555555555555544


Q ss_pred             HH
Q psy7837         112 VK  113 (299)
Q Consensus       112 l~  113 (299)
                      +.
T Consensus        83 l~   84 (524)
T TIGR02987        83 LG   84 (524)
T ss_pred             Hh
Confidence            43

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=98.19  E-value=5.6e-06  Score=70.11  Aligned_cols=45  Identities=24%  Similarity=0.379  Sum_probs=40.9

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHH
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~  172 (299)
                      ...+|.+|||+|||||-++..+++..  .+|+++|+|+.|++.++++
T Consensus        48 ~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k   94 (238)
T COG2226          48 GIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREK   94 (238)
T ss_pred             CCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHH
Confidence            34489999999999999999999885  7899999999999999886

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.19  E-value=4.9e-06  Score=70.05  Aligned_cols=45  Identities=40%  Similarity=0.617  Sum_probs=39.7

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCC---eEEEEeCChHHHHHHHHH
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGA---KVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~---~v~~~D~~~~~~~~a~~~  172 (299)
                      .+.++.+|||+|||+|+++..+++...   .|+++|+++.+++.++++
T Consensus        74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~  121 (215)
T TIGR00080        74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERR  121 (215)
T ss_pred             CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence            457789999999999999999988743   499999999999999875

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=98.18  E-value=6.3e-06  Score=67.69  Aligned_cols=50  Identities=20%  Similarity=0.321  Sum_probs=44.0

Q ss_pred             cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .+.++.+|||+|||+|..+..++... +.++++++|.++.+++.++++...
T Consensus        42 ~l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~   91 (187)
T PRK00107         42 YLPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAE   91 (187)
T ss_pred             hcCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHH
Confidence            35668999999999999999998754 457999999999999999998876

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=98.16  E-value=9.2e-06  Score=65.40  Aligned_cols=40  Identities=38%  Similarity=0.610  Sum_probs=36.5

Q ss_pred             cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHH
Q psy7837          64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPE  103 (299)
Q Consensus        64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~  103 (299)
                      .+++|++|+|+-.|.||+|..++..++++|.|+++--.+.
T Consensus        45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~   84 (238)
T COG4798          45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAEL   84 (238)
T ss_pred             ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhh
Confidence            4899999999999999999999999999999999876544

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.16  E-value=5.9e-05  Score=64.87  Aligned_cols=115  Identities=13%  Similarity=0.058  Sum_probs=85.7

Q ss_pred             HHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc-C---CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCe-EEEEcC
Q psy7837         118 TYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM-G---AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENF-EFVCAD  192 (299)
Q Consensus       118 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~-~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v-~~~~~d  192 (299)
                      .+...+..+..-...-+||||.||.|...+..... .   .+|...|.++..++..++.++.     .+..++ +|.++|
T Consensus       122 ~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~-----~gL~~i~~f~~~d  196 (311)
T PF12147_consen  122 LIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAE-----RGLEDIARFEQGD  196 (311)
T ss_pred             HHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHH-----cCCccceEEEecC
Confidence            33444555555556789999999999988866544 2   4699999999999999999988     455555 999999


Q ss_pred             CCCC--CC-CCCCeeEEEecchhhhHH---------HHHHHhccCCcEEEEEecCCC
Q psy7837         193 GRRG--YP-DAAPYDVIYISQAIRDIP---------WHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       193 ~~~~--~~-~~~~fD~v~~~~~~~~~~---------~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      +.+.  +. -....+++++.+.++-++         ..+...+.|||.|+....++.
T Consensus       197 Afd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwH  253 (311)
T PF12147_consen  197 AFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWH  253 (311)
T ss_pred             CCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCC
Confidence            8852  11 123478999888765333         457889999999999886654

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.15  E-value=7.5e-06  Score=68.78  Aligned_cols=46  Identities=43%  Similarity=0.629  Sum_probs=40.3

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~  172 (299)
                      ..+.++.+|||+|||+|+++..+++.   +.+|+++|+++++++.++++
T Consensus        72 l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~  120 (212)
T PRK13942         72 LDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKT  120 (212)
T ss_pred             cCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH
Confidence            34577999999999999999988876   35899999999999999875

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.15  E-value=6e-06  Score=66.08  Aligned_cols=93  Identities=24%  Similarity=0.246  Sum_probs=75.7

Q ss_pred             CCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecch
Q psy7837         132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQA  211 (299)
Q Consensus       132 ~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~  211 (299)
                      ...+.|+|+|+|.++...+....+|+++|.+|...+.+.+|+..     .+..|++++.+|+...-+  ...|+|+|-..
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v-----~g~~n~evv~gDA~~y~f--e~ADvvicEml  105 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHV-----PGDVNWEVVVGDARDYDF--ENADVVICEML  105 (252)
T ss_pred             hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCC-----CCCcceEEEecccccccc--cccceeHHHHh
Confidence            47899999999999999999988899999999999999999877     678999999999987544  34799988553


Q ss_pred             hh--------hHHHHHHHhccCCcEEEE
Q psy7837         212 IR--------DIPWHIVDQLKLGGRMLF  231 (299)
Q Consensus       212 ~~--------~~~~~~~~~L~~gG~lv~  231 (299)
                      -.        .+...+.+.|+.++.++=
T Consensus       106 DTaLi~E~qVpV~n~vleFLr~d~tiiP  133 (252)
T COG4076         106 DTALIEEKQVPVINAVLEFLRYDPTIIP  133 (252)
T ss_pred             hHHhhcccccHHHHHHHHHhhcCCcccc
Confidence            22        223467778888887764

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.14  E-value=8.1e-06  Score=71.81  Aligned_cols=66  Identities=30%  Similarity=0.419  Sum_probs=56.6

Q ss_pred             ccccc-CCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          44 HNAFM-ESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        44 ~~~~~-~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .||+. .++.+...+++.+.  +.++++|||||||+|.+|..+++..   .+++++|+++.+++.+++.+..
T Consensus        14 ~GQnFL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~   80 (294)
T PTZ00338         14 FGQHILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQN   80 (294)
T ss_pred             CCccccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHh
Confidence            46655 57888888888776  8899999999999999999998864   4699999999999999988764

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.13  E-value=7.9e-06  Score=70.66  Aligned_cols=53  Identities=23%  Similarity=0.397  Sum_probs=44.4

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK  110 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~  110 (299)
                      ..+++.+.  ..++.+|||+|||+|.++..+++.. +.++++++|+++.+++.+++
T Consensus        19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~   71 (255)
T PRK14103         19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARE   71 (255)
T ss_pred             HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHh
Confidence            45555554  5788999999999999999999876 45789999999999998865

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=98.11  E-value=1.2e-05  Score=60.97  Aligned_cols=45  Identities=33%  Similarity=0.465  Sum_probs=39.4

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHH
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~  172 (299)
                      ...++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.++++
T Consensus        16 ~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~   62 (124)
T TIGR02469        16 RLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERN   62 (124)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHH
Confidence            4556789999999999999999886  46899999999999998865

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.11  E-value=9.7e-06  Score=67.65  Aligned_cols=48  Identities=19%  Similarity=0.243  Sum_probs=41.9

Q ss_pred             cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Q psy7837          64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV  112 (299)
Q Consensus        64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l  112 (299)
                      .+.++.+|||+|||+|..+..+++..+ ...++|+|+++.+++.+++.+
T Consensus        40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~   87 (204)
T TIGR03587        40 RLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYL   87 (204)
T ss_pred             hcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhC
Confidence            467888999999999999999988753 468999999999999998754

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=98.10  E-value=8.3e-06  Score=66.74  Aligned_cols=47  Identities=21%  Similarity=0.272  Sum_probs=41.3

Q ss_pred             CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          67 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        67 ~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +|.+|||+|||+|.++..++.. .+.++++++|.++.+++.++++..+
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~   88 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAE   88 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHH
Confidence            4899999999999999999854 4568899999999999999888765

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>KOG3045|consensus

Probab=98.09  E-value=1.9e-05  Score=66.48  Aligned_cols=89  Identities=18%  Similarity=0.162  Sum_probs=68.4

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      +........|.|+|||.+.++.   +.-..|++.|+                    ...|-.++.+|+...+.++++.|+
T Consensus       175 ik~r~~~~vIaD~GCGEakiA~---~~~~kV~SfDL--------------------~a~~~~V~~cDm~~vPl~d~svDv  231 (325)
T KOG3045|consen  175 IKRRPKNIVIADFGCGEAKIAS---SERHKVHSFDL--------------------VAVNERVIACDMRNVPLEDESVDV  231 (325)
T ss_pred             HHhCcCceEEEecccchhhhhh---ccccceeeeee--------------------ecCCCceeeccccCCcCccCcccE
Confidence            3334556799999999988766   44556999986                    345777889999988888899999


Q ss_pred             EEecchh-----hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         206 IYISQAI-----RDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       206 v~~~~~~-----~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      +++-..+     ..+..++.++|++||.++|..-...
T Consensus       232 aV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SR  268 (325)
T KOG3045|consen  232 AVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSR  268 (325)
T ss_pred             EEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhh
Confidence            8764443     4566899999999999999865543

>PRK05785 hypothetical protein; Provisional

Probab=98.08  E-value=1.2e-05  Score=68.20  Aligned_cols=55  Identities=16%  Similarity=0.198  Sum_probs=44.4

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~  111 (299)
                      ..+++.+.....++.+|||+|||+|.++..+++..  .++++++|+++.|++.+++.
T Consensus        39 ~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~   93 (226)
T PRK05785         39 AELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA   93 (226)
T ss_pred             HHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc
Confidence            44555555444568899999999999999998876  36899999999999988753

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.07  E-value=1.4e-05  Score=67.13  Aligned_cols=47  Identities=36%  Similarity=0.597  Sum_probs=41.3

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHH
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~  172 (299)
                      .....++.+|||+|||+|+++..+++.+.+++++|.++++++.++++
T Consensus        73 ~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~  119 (212)
T PRK00312         73 LLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRR  119 (212)
T ss_pred             hcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHH
Confidence            34557789999999999999998888877899999999999988865

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.07  E-value=4.3e-05  Score=66.33  Aligned_cols=84  Identities=23%  Similarity=0.161  Sum_probs=65.7

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCC--
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDA--  200 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--  200 (299)
                      |.......++..|+|+|+|.|.+|..+...+.+++++|.++.+++..++.+.       ...+++++.+|+.......  
T Consensus        22 Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~-------~~~~~~vi~~D~l~~~~~~~~   94 (262)
T PF00398_consen   22 IVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA-------SNPNVEVINGDFLKWDLYDLL   94 (262)
T ss_dssp             HHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT-------TCSSEEEEES-TTTSCGGGHC
T ss_pred             HHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh-------hcccceeeecchhccccHHhh
Confidence            3333455589999999999999999999999999999999999999998754       2468999999998643321  


Q ss_pred             -CCeeEEEecchhh
Q psy7837         201 -APYDVIYISQAIR  213 (299)
Q Consensus       201 -~~fD~v~~~~~~~  213 (299)
                       .....|+.+.+..
T Consensus        95 ~~~~~~vv~NlPy~  108 (262)
T PF00398_consen   95 KNQPLLVVGNLPYN  108 (262)
T ss_dssp             SSSEEEEEEEETGT
T ss_pred             cCCceEEEEEeccc
Confidence             3456778777763

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.07  E-value=1.2e-05  Score=67.24  Aligned_cols=46  Identities=43%  Similarity=0.702  Sum_probs=38.1

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHc-C--CeEEEEeCChHHHHHHHHH
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYM-G--AKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~-~--~~v~~~D~~~~~~~~a~~~  172 (299)
                      ..+.++.+|||||||+|+++..++.. +  ..|+++|.++.+.+.|+++
T Consensus        68 L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~  116 (209)
T PF01135_consen   68 LDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRN  116 (209)
T ss_dssp             TTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHH
T ss_pred             HhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHH
Confidence            34788999999999999999999987 3  3699999999999999876

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=98.07  E-value=7.8e-06  Score=69.59  Aligned_cols=47  Identities=26%  Similarity=0.327  Sum_probs=35.1

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~  172 (299)
                      .....++.+|||+|||+|.++..+++.   ..+|+++|+|++|++.++++
T Consensus        42 ~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k   91 (233)
T PF01209_consen   42 LLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKK   91 (233)
T ss_dssp             HHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHH
T ss_pred             ccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHH
Confidence            345677899999999999999999876   35799999999999999986

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR00740 methyltransferase, putative

Probab=98.06  E-value=2e-05  Score=67.50  Aligned_cols=50  Identities=18%  Similarity=0.268  Sum_probs=44.2

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVG-ISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~-~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.++.+|||+|||+|..+..+++.+. +..+++++|+++.+++.+++++..
T Consensus        51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~  101 (239)
T TIGR00740        51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA  101 (239)
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh
Confidence            46888999999999999999998764 468999999999999999988765

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.06  E-value=1.7e-05  Score=64.89  Aligned_cols=103  Identities=18%  Similarity=0.206  Sum_probs=64.4

Q ss_pred             HHHHHHhhhcccC--CCCeEEEEcCCCcHHHHHHHHcC---CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcC
Q psy7837         118 TYIKRINFYGHLV--YGSKVLDIGSGSGYLSALFAYMG---AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCAD  192 (299)
Q Consensus       118 ~~~~~~~~~~~~~--~~~~vLDiG~G~G~~~~~la~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  192 (299)
                      |+.+......-+.  ++.+|||+||++|.++..+..++   ..|+++|+.+.                ....++.++++|
T Consensus         8 KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------------~~~~~~~~i~~d   71 (181)
T PF01728_consen    8 KLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------------DPLQNVSFIQGD   71 (181)
T ss_dssp             HHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------------GS-TTEEBTTGG
T ss_pred             HHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc----------------ccccceeeeecc
Confidence            3343333343233  45899999999999999999997   67999999765                122456666666


Q ss_pred             CCCC--------CC--CCCCeeEEEecchhh-----------h------HHHHHHHhccCCcEEEEEecCC
Q psy7837         193 GRRG--------YP--DAAPYDVIYISQAIR-----------D------IPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       193 ~~~~--------~~--~~~~fD~v~~~~~~~-----------~------~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ....        ..  ...++|+|+++....           .      ...-+...|++||.+++.....
T Consensus        72 ~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~  142 (181)
T PF01728_consen   72 ITNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG  142 (181)
T ss_dssp             GEEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred             cchhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence            5421        11  125899999999321           1      1124567899999999877553

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.05  E-value=1.1e-05  Score=69.57  Aligned_cols=43  Identities=21%  Similarity=0.329  Sum_probs=38.5

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHH----cCCeEEEEeCChHHHHHHHHH
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAY----MGAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~----~~~~v~~~D~~~~~~~~a~~~  172 (299)
                      .++.+|||+|||+|..+..+++    .+.+++++|+|+.|++.++++
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~  101 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRH  101 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHH
Confidence            4678999999999999988876    267899999999999999987

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.05  E-value=1.4e-05  Score=69.16  Aligned_cols=55  Identities=25%  Similarity=0.375  Sum_probs=45.8

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV  112 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l  112 (299)
                      ..+++.+.  +.++.+|||+|||+|.++..+++.. +.++++++|+++.+++.+++.+
T Consensus        21 ~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~   75 (258)
T PRK01683         21 RDLLARVP--LENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL   75 (258)
T ss_pred             HHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC
Confidence            44555544  6788999999999999999999876 3579999999999999988765

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.04  E-value=3.5e-05  Score=67.94  Aligned_cols=109  Identities=15%  Similarity=0.092  Sum_probs=81.5

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHH--HHhcCCcccCCCCeEEEEcCCCCCCC-CCCCee
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKN--IRRGAPAIALAENFEFVCADGRRGYP-DAAPYD  204 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~--~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD  204 (299)
                      ..-.+||-+|.|.|....++.+.-  .+++-+|.+|.|++.++++  ++.-+.......+++++..|+.+... ..+.||
T Consensus       288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD  367 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD  367 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence            445799999999999999999883  4699999999999999943  33322112345789999999886432 235799


Q ss_pred             EEEecchhhh-----------HHHHHHHhccCCcEEEEEecCCCC
Q psy7837         205 VIYISQAIRD-----------IPWHIVDQLKLGGRMLFIKGHEDD  238 (299)
Q Consensus       205 ~v~~~~~~~~-----------~~~~~~~~L~~gG~lv~~~~~~~~  238 (299)
                      .||.+..-+.           +..-+.+.|+++|.+++....+-.
T Consensus       368 ~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~  412 (508)
T COG4262         368 VVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYF  412 (508)
T ss_pred             EEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCcc
Confidence            9999765322           224678899999999999876653

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.04  E-value=1.4e-05  Score=69.25  Aligned_cols=65  Identities=32%  Similarity=0.322  Sum_probs=55.0

Q ss_pred             ccccc-CCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          44 HNAFM-ESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        44 ~~~~~-~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      .||+. .++.....+++.+.  +.++++|||+|||+|.+|..+++..   .+++++|+++.+++.+++.+.
T Consensus         7 ~GQnfl~d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~   72 (258)
T PRK14896          7 LGQHFLIDDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEI   72 (258)
T ss_pred             CCccccCCHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhc
Confidence            45644 67888888888775  7889999999999999999999873   479999999999999887764

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.04  E-value=1.5e-05  Score=64.39  Aligned_cols=54  Identities=33%  Similarity=0.437  Sum_probs=45.6

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      ..+++.+.  +.++++|||+|||+|.++..+++.   .++++++|+++.+++.+++++.
T Consensus         3 ~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~   56 (169)
T smart00650        3 DKIVRAAN--LRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFA   56 (169)
T ss_pred             HHHHHhcC--CCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhc
Confidence            45556555  778899999999999999999987   2579999999999999987764

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.04  E-value=1.8e-05  Score=68.73  Aligned_cols=47  Identities=28%  Similarity=0.364  Sum_probs=40.7

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHc-C--CeEEEEeCChHHHHHHHHHH
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYM-G--AKVYAIEHVKNLCKRAMKNI  173 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~-~--~~v~~~D~~~~~~~~a~~~~  173 (299)
                      ..+.++.+|||+|||+|.++..+++. +  .+|+++|+|++|++.|+++.
T Consensus        69 ~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~  118 (261)
T PLN02233         69 SGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQ  118 (261)
T ss_pred             hCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHh
Confidence            35567899999999999999988875 3  58999999999999998764

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.03  E-value=6.9e-05  Score=66.30  Aligned_cols=87  Identities=18%  Similarity=0.208  Sum_probs=64.7

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      .+.+|.++||+||++|.++..+.++|.+|+++|..+ +-...           ....++....+|.....+..+.+|+++
T Consensus       208 ~~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~~~L-----------~~~~~V~h~~~d~fr~~p~~~~vDwvV  275 (357)
T PRK11760        208 RLAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MAQSL-----------MDTGQVEHLRADGFKFRPPRKNVDWLV  275 (357)
T ss_pred             ccCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cCHhh-----------hCCCCEEEEeccCcccCCCCCCCCEEE
Confidence            357899999999999999999999999999999543 21111           234689999999876554357899999


Q ss_pred             ecchhh--hHHHHHHHhccCC
Q psy7837         208 ISQAIR--DIPWHIVDQLKLG  226 (299)
Q Consensus       208 ~~~~~~--~~~~~~~~~L~~g  226 (299)
                      ++.+..  .+.+-+.++|..|
T Consensus       276 cDmve~P~rva~lm~~Wl~~g  296 (357)
T PRK11760        276 CDMVEKPARVAELMAQWLVNG  296 (357)
T ss_pred             EecccCHHHHHHHHHHHHhcC
Confidence            998753  3444555555544

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.02  E-value=1.9e-05  Score=65.44  Aligned_cols=55  Identities=18%  Similarity=0.156  Sum_probs=44.7

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+++.+.  ..++.+|||+|||+|..+.++++..   .+|+++|+++.+++.+++....
T Consensus        20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~   74 (195)
T TIGR00477        20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKAR   74 (195)
T ss_pred             HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHH
Confidence            45555554  4556799999999999999999853   4799999999999998877654

Part of a tellurite-reducing operon tehA and tehB

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.02  E-value=5.4e-05  Score=62.98  Aligned_cols=61  Identities=26%  Similarity=0.368  Sum_probs=43.3

Q ss_pred             cchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          51 PSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        51 p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      |.....+++.+.  +.+++.++|+|||.|......+...+ -.+.+|+|+.+...+.+......
T Consensus        28 ~~~~~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~   88 (205)
T PF08123_consen   28 PEFVSKILDELN--LTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEE   88 (205)
T ss_dssp             HHHHHHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHH
Confidence            344567777765  89999999999999999888776654 24699999999999888876655

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.01  E-value=6.5e-05  Score=62.51  Aligned_cols=96  Identities=25%  Similarity=0.308  Sum_probs=66.6

Q ss_pred             EEEEcCCCcHHHHHHHHcCC--eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecch-
Q psy7837         135 VLDIGSGSGYLSALFAYMGA--KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQA-  211 (299)
Q Consensus       135 vLDiG~G~G~~~~~la~~~~--~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~-  211 (299)
                      |+||||--|+++..+.+.|.  .++++|+++..++.|+++++.+    +...++++..+|......+....|.|++.++ 
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~----~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMG   76 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY----GLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMG   76 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT----T-TTTEEEEE-SGGGG--GGG---EEEEEEE-
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc----CCcccEEEEECCcccccCCCCCCCEEEEecCC
Confidence            68999999999999999986  5999999999999999999985    4578899999998876555344777766554 


Q ss_pred             ---hhhHHHHHHHhccCCcEEEEEec
Q psy7837         212 ---IRDIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       212 ---~~~~~~~~~~~L~~gG~lv~~~~  234 (299)
                         ...+.++....++..-.|++.-.
T Consensus        77 G~lI~~ILe~~~~~~~~~~~lILqP~  102 (205)
T PF04816_consen   77 GELIIEILEAGPEKLSSAKRLILQPN  102 (205)
T ss_dssp             HHHHHHHHHHTGGGGTT--EEEEEES
T ss_pred             HHHHHHHHHhhHHHhccCCeEEEeCC
Confidence               23444455555555556666544

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.01  E-value=2.3e-05  Score=66.09  Aligned_cols=57  Identities=23%  Similarity=0.394  Sum_probs=45.5

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+++.+.....++.+|||+|||+|.++..++..   ..+++++|+++.+++.+++.+..
T Consensus        43 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~   99 (219)
T TIGR02021        43 RKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQG   99 (219)
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHh
Confidence            3444454422457899999999999999999875   34799999999999999988865

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>KOG2940|consensus

Probab=98.00  E-value=1.4e-05  Score=65.96  Aligned_cols=101  Identities=15%  Similarity=0.051  Sum_probs=81.7

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      +....++||||+.|.....+...+. +++-+|.|-.|++.++..-       .....+...++|-......++++|+|+.
T Consensus        71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-------dp~i~~~~~v~DEE~Ldf~ens~DLiis  143 (325)
T KOG2940|consen   71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-------DPSIETSYFVGDEEFLDFKENSVDLIIS  143 (325)
T ss_pred             hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-------CCceEEEEEecchhcccccccchhhhhh
Confidence            3467899999999999999988875 5999999999999887641       1233566778887776677799999999


Q ss_pred             cchhhhHHH------HHHHhccCCcEEEEEecCCC
Q psy7837         209 SQAIRDIPW------HIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       209 ~~~~~~~~~------~~~~~L~~gG~lv~~~~~~~  237 (299)
                      ...++|+.+      .++..|||+|.++.+.....
T Consensus       144 SlslHW~NdLPg~m~~ck~~lKPDg~Fiasmlggd  178 (325)
T KOG2940|consen  144 SLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGD  178 (325)
T ss_pred             hhhhhhhccCchHHHHHHHhcCCCccchhHHhccc
Confidence            999988763      78899999999998766543

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.00  E-value=2.8e-05  Score=62.79  Aligned_cols=45  Identities=27%  Similarity=0.412  Sum_probs=40.4

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHH
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~  172 (299)
                      .+.++.+++|||||||+.+..++..  ..+|+++|.++++++..++|
T Consensus        31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N   77 (187)
T COG2242          31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERN   77 (187)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHH
Confidence            5678999999999999999999954  67899999999999988876

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.00  E-value=4e-05  Score=61.76  Aligned_cols=67  Identities=22%  Similarity=0.300  Sum_probs=50.3

Q ss_pred             cccCCcchHHHHHHHH-hccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          46 AFMESPSDHCLVLELL-SGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        46 ~~~~~p~~~~~~~~~l-~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      |....+.+.+.++... ......|..|+|+|||+|.++...+....  .+|+++|++++.++.++++..+
T Consensus        23 QY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~   90 (198)
T COG2263          23 QYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEE   90 (198)
T ss_pred             ecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHh
Confidence            4444445555555443 33456788999999999999887765543  5899999999999999999876

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.00  E-value=2.4e-05  Score=66.46  Aligned_cols=46  Identities=17%  Similarity=0.246  Sum_probs=39.8

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~  172 (299)
                      ..+.++.+|||+|||+|.++..+++.   +.+|+++|+++++++.++++
T Consensus        41 l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~   89 (231)
T TIGR02752        41 MNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQK   89 (231)
T ss_pred             cCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence            35567899999999999999999875   35899999999999988865

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=97.99  E-value=2.2e-05  Score=67.86  Aligned_cols=65  Identities=34%  Similarity=0.297  Sum_probs=54.1

Q ss_pred             cccc-cCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          44 HNAF-MESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        44 ~~~~-~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      .||+ +..+.+...+++.+.  +.++++|||+|||+|.++..+++...   .++++|+++.+++.+++.+.
T Consensus         7 ~gq~fl~d~~i~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~   72 (253)
T TIGR00755         7 LGQNFLIDESVIQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLS   72 (253)
T ss_pred             CCCccCCCHHHHHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhC
Confidence            4553 357778888888775  77899999999999999999998864   49999999999998887653

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.99  E-value=6.7e-05  Score=62.68  Aligned_cols=119  Identities=23%  Similarity=0.217  Sum_probs=84.9

Q ss_pred             HHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHH-HHHHHHhcCCcccCCCCe
Q psy7837         109 RKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKR-AMKNIRRGAPAIALAENF  186 (299)
Q Consensus       109 ~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~-a~~~~~~~~~~~~~~~~v  186 (299)
                      .....+++.++...+....-..++..|||+|+.||.|+..+.+.|+. |+++|..-+.+.- .|.           ..++
T Consensus        57 ~~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~-----------d~rV  125 (245)
T COG1189          57 QPYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN-----------DPRV  125 (245)
T ss_pred             cCccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc-----------CCcE
Confidence            33455666777778888887889999999999999999999999876 9999997654432 221           2232


Q ss_pred             -EEEEcCCCCCCCC--CCCeeEEEecchhh---hHHHHHHHhccCCcEEEEEecCCCC
Q psy7837         187 -EFVCADGRRGYPD--AAPYDVIYISQAIR---DIPWHIVDQLKLGGRMLFIKGHEDD  238 (299)
Q Consensus       187 -~~~~~d~~~~~~~--~~~fD~v~~~~~~~---~~~~~~~~~L~~gG~lv~~~~~~~~  238 (299)
                       .+...|+....++  .+..|+++++..+.   .+...+..++++++.+++-+.+...
T Consensus       126 ~~~E~tN~r~l~~~~~~~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~LvKPQFE  183 (245)
T COG1189         126 IVLERTNVRYLTPEDFTEKPDLIVIDVSFISLKLILPALLLLLKDGGDLVLLVKPQFE  183 (245)
T ss_pred             EEEecCChhhCCHHHcccCCCeEEEEeehhhHHHHHHHHHHhcCCCceEEEEecchhh
Confidence             3333444432111  13578999988764   4567899999999999998877643

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=97.98  E-value=2.3e-05  Score=65.01  Aligned_cols=55  Identities=22%  Similarity=0.215  Sum_probs=45.0

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+++.+.  ..++.+|||+|||+|..+..+++..   .+|+++|+++.+++.+++....
T Consensus        20 ~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~   74 (197)
T PRK11207         20 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAA   74 (197)
T ss_pred             HHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHH
Confidence            34455554  5677899999999999999999852   3799999999999999987765

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=97.95  E-value=1.8e-05  Score=58.14  Aligned_cols=44  Identities=34%  Similarity=0.615  Sum_probs=35.5

Q ss_pred             EEEEccCCCHHHHHHHHHh--CCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          71 VLEIGTGSGYLTTLFGAMV--GISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        71 vldiG~G~G~~~~~la~~~--~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      |||+|||+|..+..+.+.+  +++.+++++|+++.+++.+++....
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~   46 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE   46 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh
Confidence            7999999999999999987  4347999999999999999988865

>KOG4589|consensus

Probab=97.95  E-value=2.5e-05  Score=62.61  Aligned_cols=38  Identities=24%  Similarity=0.358  Sum_probs=35.6

Q ss_pred             cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCC
Q psy7837          64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHI  101 (299)
Q Consensus        64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~  101 (299)
                      .++|+++|||+||.+|.|++..-+..++.|.+.|+|+.
T Consensus        66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll  103 (232)
T KOG4589|consen   66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL  103 (232)
T ss_pred             ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence            46899999999999999999999999999999999973

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.94  E-value=3.9e-05  Score=63.73  Aligned_cols=46  Identities=28%  Similarity=0.455  Sum_probs=40.5

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~  172 (299)
                      ..+.++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.++++
T Consensus        36 l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n   84 (198)
T PRK00377         36 LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRN   84 (198)
T ss_pred             cCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence            35678999999999999999998764   35799999999999999887

>PLN02244 tocopherol O-methyltransferase

Probab=97.94  E-value=3.3e-05  Score=69.64  Aligned_cols=47  Identities=21%  Similarity=0.275  Sum_probs=41.9

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +++++|||+|||+|.++..+++..+  .+++++|+++.+++.+++....
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g--~~v~gvD~s~~~i~~a~~~~~~  163 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYG--ANVKGITLSPVQAARANALAAA  163 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHh
Confidence            6789999999999999999998763  5899999999999999887765

>PRK08317 hypothetical protein; Provisional

Probab=97.93  E-value=3.9e-05  Score=65.21  Aligned_cols=55  Identities=33%  Similarity=0.559  Sum_probs=47.4

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~  111 (299)
                      ..+++.+.  +.++.+|||+|||+|.++..+++..++.++++++|+++.+++.+++.
T Consensus         9 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~   63 (241)
T PRK08317          9 ARTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER   63 (241)
T ss_pred             HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence            34445544  78899999999999999999999887778999999999999998887

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.92  E-value=4.9e-05  Score=65.13  Aligned_cols=142  Identities=15%  Similarity=0.135  Sum_probs=78.0

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCe
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSK  134 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  134 (299)
                      ..+.+.+...-..|.++||+|||+-..-...+....  ..++..|..+.-.+..++.++..                  .
T Consensus        44 ~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f--~~I~l~dy~~~N~~el~kWl~~~------------------~  103 (256)
T PF01234_consen   44 KNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWF--EEIVLSDYSEQNREELEKWLRKE------------------G  103 (256)
T ss_dssp             HHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTE--EEEEEEESSHHHHHHHHHHHTT-------------------T
T ss_pred             HHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhh--cceEEeeccHhhHHHHHHHHCCC------------------C
Confidence            344455555556788999999999655433333322  36999999998888877777651                  0


Q ss_pred             EEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC------CCCeeEEEe
Q psy7837         135 VLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD------AAPYDVIYI  208 (299)
Q Consensus       135 vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~------~~~fD~v~~  208 (299)
                      ..|    +-.+...++.+-.   --+...+..+..|+.+            -.++.+|+.+..+-      ..+||+|++
T Consensus       104 a~D----Ws~~~~~v~~lEg---~~~~~~e~e~~lR~~V------------k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s  164 (256)
T PF01234_consen  104 AFD----WSPFWKYVCELEG---KREKWEEKEEKLRRAV------------KQVVPCDVTQPNPLDPPVVLPPKFDCVIS  164 (256)
T ss_dssp             S------THHHHHHHHHHTT---SSSGHHHHHHHHHHHE------------EEEEE--TTSSSTTTTS-SS-SSEEEEEE
T ss_pred             CCC----ccHHHHHHHhccC---CcchhhhHHHHHHHhh------------ceEEEeeccCCCCCCccccCccchhhhhh
Confidence            000    1122222222211   0000122233333332            23677888753321      124999999


Q ss_pred             cchhhh----------HHHHHHHhccCCcEEEEEecC
Q psy7837         209 SQAIRD----------IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       209 ~~~~~~----------~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ..+++.          ..+++.++|||||.|++...-
T Consensus       165 ~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l  201 (256)
T PF01234_consen  165 SFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL  201 (256)
T ss_dssp             ESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             hHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence            888753          335899999999999997653

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.91  E-value=0.00017  Score=58.72  Aligned_cols=115  Identities=24%  Similarity=0.274  Sum_probs=85.8

Q ss_pred             cchHHHHHHHHh-ccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhccc
Q psy7837          51 PSDHCLVLELLS-GHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHL  129 (299)
Q Consensus        51 p~~~~~~~~~l~-~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~  129 (299)
                      ..+.+.++.-|. -.+++|++||=+|+.+|......+..++ +|.+|+++++++....-.....+               
T Consensus        59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~---------------  122 (231)
T COG1889          59 SKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK---------------  122 (231)
T ss_pred             hHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh---------------
Confidence            345566666654 3478999999999999999999999998 89999999999877654444433               


Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC---CCCCeeEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP---DAAPYDVI  206 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~v  206 (299)
                                                                           ..|+-.+.+|+..+..   --+..|+|
T Consensus       123 -----------------------------------------------------R~Ni~PIL~DA~~P~~Y~~~Ve~VDvi  149 (231)
T COG1889         123 -----------------------------------------------------RPNIIPILEDARKPEKYRHLVEKVDVI  149 (231)
T ss_pred             -----------------------------------------------------CCCceeeecccCCcHHhhhhcccccEE
Confidence                                                                 3588888899875321   11458999


Q ss_pred             Eecchhh----hHHHHHHHhccCCcEEEEEec
Q psy7837         207 YISQAIR----DIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       207 ~~~~~~~----~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      +.+-.-.    -+..++...|++||.+++...
T Consensus       150 y~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iK  181 (231)
T COG1889         150 YQDVAQPNQAEILADNAEFFLKKGGYVVIAIK  181 (231)
T ss_pred             EEecCCchHHHHHHHHHHHhcccCCeEEEEEE
Confidence            9887643    244678889999997777653

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.90  E-value=3.4e-06  Score=62.62  Aligned_cols=95  Identities=31%  Similarity=0.478  Sum_probs=38.5

Q ss_pred             EEEccCCCHHHHHHHHHhCCCc--eEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHH
Q psy7837          72 LEIGTGSGYLTTLFGAMVGISG--KVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALF  149 (299)
Q Consensus        72 ldiG~G~G~~~~~la~~~~~~g--~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l  149 (299)
                      ||+|+..|+.+.++++.+.+.+  +++++|..+. .+..++.+++.                                  
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~----------------------------------   45 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA----------------------------------   45 (106)
T ss_dssp             --------------------------EEEESS-------------G----------------------------------
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhc----------------------------------
Confidence            6899999999999998887654  7888888886 22222222210                                  


Q ss_pred             HHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC--CCCCeeEEEecchh--h---hHHHHHHHh
Q psy7837         150 AYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP--DAAPYDVIYISQAI--R---DIPWHIVDQ  222 (299)
Q Consensus       150 a~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD~v~~~~~~--~---~~~~~~~~~  222 (299)
                                                     ....+++++.++......  ...+||++++++.-  .   .-.+.+.+.
T Consensus        46 -------------------------------~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~~~~~~~dl~~~~~~   94 (106)
T PF13578_consen   46 -------------------------------GLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHSYEAVLRDLENALPR   94 (106)
T ss_dssp             -------------------------------GG-BTEEEEES-THHHHHHHHH--EEEEEEES---HHHHHHHHHHHGGG
T ss_pred             -------------------------------CCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCCHHHHHHHHHHHHHH
Confidence                                           344579999998764221  13689999999862  2   233578889


Q ss_pred             ccCCcEEEEE
Q psy7837         223 LKLGGRMLFI  232 (299)
Q Consensus       223 L~~gG~lv~~  232 (299)
                      |+|||.+++-
T Consensus        95 l~~ggviv~d  104 (106)
T PF13578_consen   95 LAPGGVIVFD  104 (106)
T ss_dssp             EEEEEEEEEE
T ss_pred             cCCCeEEEEe
Confidence            9999999874

>KOG2730|consensus

Probab=97.90  E-value=1.1e-05  Score=66.13  Aligned_cols=78  Identities=23%  Similarity=0.266  Sum_probs=66.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC----CCCCCeeEE
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY----PDAAPYDVI  206 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~v  206 (299)
                      ....|+|..||.|..+..++..+..|+++|+++.-+..|++|++.+    +...+++|++||+.+..    .....+|+|
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiY----GI~~rItFI~GD~ld~~~~lq~~K~~~~~v  169 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVY----GVPDRITFICGDFLDLASKLKADKIKYDCV  169 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceee----cCCceeEEEechHHHHHHHHhhhhheeeee
Confidence            3678999999999999999999999999999999999999999986    56779999999987422    222457888


Q ss_pred             Eecchh
Q psy7837         207 YISQAI  212 (299)
Q Consensus       207 ~~~~~~  212 (299)
                      +..++.
T Consensus       170 f~sppw  175 (263)
T KOG2730|consen  170 FLSPPW  175 (263)
T ss_pred             ecCCCC
Confidence            887764

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=97.89  E-value=2.2e-05  Score=64.39  Aligned_cols=49  Identities=24%  Similarity=0.413  Sum_probs=44.4

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.+..+|.|+|||+|..|..|++.++ ...++|+|.|+.|++.|+..+..
T Consensus        28 ~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rlp~   76 (257)
T COG4106          28 LERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRLPD   76 (257)
T ss_pred             ccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhCCC
Confidence            57788999999999999999999985 58999999999999999888765

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=97.88  E-value=7.2e-05  Score=65.69  Aligned_cols=74  Identities=15%  Similarity=0.238  Sum_probs=54.2

Q ss_pred             cccccccccCCcchHHHHHHHHhccC--CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          40 HNIGHNAFMESPSDHCLVLELLSGHL--KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        40 ~~~~~~~~~~~p~~~~~~~~~l~~~~--~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+..+..+..|.....+...+...+  .++.+|||+|||+|.++..+++... ..+++++|+++.+++.+++++..
T Consensus        92 f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~  167 (284)
T TIGR03533        92 FYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIER  167 (284)
T ss_pred             EEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHH
Confidence            34445555555555444444443222  3467999999999999999998753 46899999999999999999876

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=97.88  E-value=6.5e-05  Score=60.81  Aligned_cols=57  Identities=30%  Similarity=0.497  Sum_probs=48.1

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+++.+...  ++.+|||+|||+|..+..+++.. +..+++++|+++..++.+++++..
T Consensus        21 ~lL~~~l~~~--~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~   77 (170)
T PF05175_consen   21 RLLLDNLPKH--KGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAER   77 (170)
T ss_dssp             HHHHHHHHHH--TTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhc--cCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHh
Confidence            4566666633  78899999999999999999865 456799999999999999999887

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>KOG1541|consensus

Probab=97.87  E-value=3e-05  Score=63.83  Aligned_cols=71  Identities=30%  Similarity=0.399  Sum_probs=52.8

Q ss_pred             CCcchHHHHHHHHhccCCC--CCEEEEEccCCCHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhh
Q psy7837          49 ESPSDHCLVLELLSGHLKY--GDKVLEIGTGSGYLTTLFGAMVGISG-KVYTIEHIPELLEAARKRVKAKAETYIKRINF  125 (299)
Q Consensus        49 ~~p~~~~~~~~~l~~~~~~--g~~vldiG~G~G~~~~~la~~~~~~g-~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~  125 (299)
                      ++-.+.++.++.|.  +.+  ..-+||||||+|-.+..+.+    +| ..+|+|+++.|++.|.+..-++          
T Consensus        32 IQ~em~eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~----~Gh~wiGvDiSpsML~~a~~~e~eg----------   95 (270)
T KOG1541|consen   32 IQAEMAERALELLA--LPGPKSGLILDIGCGSGLSGSVLSD----SGHQWIGVDISPSMLEQAVERELEG----------   95 (270)
T ss_pred             ehHHHHHHHHHHhh--CCCCCCcEEEEeccCCCcchheecc----CCceEEeecCCHHHHHHHHHhhhhc----------
Confidence            34556677888876  554  56789999999999888875    34 4679999999999998743331          


Q ss_pred             hcccCCCCeEEEEcCC
Q psy7837         126 YGHLVYGSKVLDIGSG  141 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G  141 (299)
                            +-..-|.|.|
T Consensus        96 ------dlil~DMG~G  105 (270)
T KOG1541|consen   96 ------DLILCDMGEG  105 (270)
T ss_pred             ------CeeeeecCCC
Confidence                  4456677777

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.86  E-value=5.1e-05  Score=69.44  Aligned_cols=54  Identities=31%  Similarity=0.362  Sum_probs=45.1

Q ss_pred             HHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          56 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        56 ~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      .+++.+.  +++|.+|||+|||+|.++..+++..+  .+|+++|+++.+++.++++..
T Consensus       158 ~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~  211 (383)
T PRK11705        158 LICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCA  211 (383)
T ss_pred             HHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhc
Confidence            3444444  78999999999999999999988754  489999999999999988764

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=97.86  E-value=4e-05  Score=63.87  Aligned_cols=48  Identities=21%  Similarity=0.131  Sum_probs=42.5

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++..
T Consensus        39 ~~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~   86 (202)
T PRK00121         39 NDAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEE   86 (202)
T ss_pred             CCCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHH
Confidence            367899999999999999998875 457899999999999999988765

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=97.85  E-value=0.00026  Score=66.18  Aligned_cols=61  Identities=20%  Similarity=0.268  Sum_probs=48.2

Q ss_pred             cchHHHHHHHHhcc--CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          51 PSDHCLVLELLSGH--LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        51 p~~~~~~~~~l~~~--~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +...+.+++.+.+.  +.++++|||+|||+|.++..+++..   .+++++|+++.+++.+++++..
T Consensus       279 ~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~  341 (443)
T PRK13168        279 AQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARR  341 (443)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHH
Confidence            33344444444332  4688999999999999999999875   4799999999999999998865

>PRK04266 fibrillarin; Provisional

Probab=97.85  E-value=6.6e-05  Score=63.60  Aligned_cols=45  Identities=27%  Similarity=0.321  Sum_probs=39.6

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHH
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMK  171 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~  171 (299)
                      ..+.++.+|||+|||+|.++..+++..  ..|+++|+++.|++.+.+
T Consensus        68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~  114 (226)
T PRK04266         68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLE  114 (226)
T ss_pred             CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHH
Confidence            467789999999999999999999873  589999999999987754

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.85  E-value=0.00014  Score=63.85  Aligned_cols=61  Identities=20%  Similarity=0.226  Sum_probs=52.7

Q ss_pred             cchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          51 PSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        51 p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      |=+...+++.|.  +++|..++|..+|.|..|..+++.++. |+|+++|.++..++.+++.+..
T Consensus         6 pVll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~   66 (305)
T TIGR00006         6 SVLLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSD   66 (305)
T ss_pred             chhHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhh
Confidence            345566777776  789999999999999999999998865 9999999999999999988765

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PRK14967 putative methyltransferase; Provisional

Probab=97.84  E-value=0.00011  Score=62.22  Aligned_cols=48  Identities=31%  Similarity=0.423  Sum_probs=42.0

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ++++++|||+|||+|.++..+++. + .++++++|+++.+++.+++++..
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~   81 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALL   81 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHH
Confidence            678999999999999999998875 3 35899999999999999988765

>PRK06202 hypothetical protein; Provisional

Probab=97.84  E-value=5e-05  Score=64.66  Aligned_cols=48  Identities=25%  Similarity=0.333  Sum_probs=40.7

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMV---GISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~---~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      .++.+|||+|||+|.++..+++..   ++..+++++|+++.+++.+++...
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~  109 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR  109 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc
Confidence            577899999999999999988764   334589999999999999987654

>TIGR03438 probable methyltransferase

Probab=97.83  E-value=6.9e-05  Score=66.43  Aligned_cols=43  Identities=21%  Similarity=0.275  Sum_probs=38.6

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~  172 (299)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+|+.|++.++++
T Consensus        62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~  107 (301)
T TIGR03438        62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAA  107 (301)
T ss_pred             CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHH
Confidence            45789999999999999998877   57899999999999999876

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.82  E-value=0.00062  Score=58.79  Aligned_cols=105  Identities=22%  Similarity=0.158  Sum_probs=72.9

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHh----cCCc--------------------------
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRR----GAPA--------------------------  179 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~----~~~~--------------------------  179 (299)
                      ....+||-.|||.|+++..++.+|..+.+.|.|--|+-..+-.+..    ++..                          
T Consensus        55 ~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv  134 (270)
T PF07942_consen   55 RSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV  134 (270)
T ss_pred             CCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence            4467999999999999999999999999999999987655543321    0000                          


Q ss_pred             -----ccCCCCeEEEEcCCCCCCCCC---CCeeEEEecchh---hh---HHHHHHHhccCCcEEEEEecC
Q psy7837         180 -----IALAENFEFVCADGRRGYPDA---APYDVIYISQAI---RD---IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       180 -----~~~~~~v~~~~~d~~~~~~~~---~~fD~v~~~~~~---~~---~~~~~~~~L~~gG~lv~~~~~  235 (299)
                           .....+.....||........   +.||+|+...-+   +.   ..+.+.++||||| +.|..++
T Consensus       135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG-~WIN~GP  203 (270)
T PF07942_consen  135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGG-YWINFGP  203 (270)
T ss_pred             CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCC-EEEecCC
Confidence                 011235666777777544443   689998765433   22   3368999999999 5666654

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG1596|consensus

Probab=97.82  E-value=9.4e-05  Score=61.63  Aligned_cols=105  Identities=27%  Similarity=0.294  Sum_probs=77.1

Q ss_pred             cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCc
Q psy7837          64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSG  143 (299)
Q Consensus        64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G  143 (299)
                      +++||.+||=+|+++|+.-...+..++++|-||+++.+..--.   +.+.-                             
T Consensus       153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGR---dL~nm-----------------------------  200 (317)
T KOG1596|consen  153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGR---DLINM-----------------------------  200 (317)
T ss_pred             eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchH---HHHHH-----------------------------
Confidence            5799999999999999999999999999999999998764221   11111                             


Q ss_pred             HHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC---CCCCeeEEEecchhhhHH----
Q psy7837         144 YLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP---DAAPYDVIYISQAIRDIP----  216 (299)
Q Consensus       144 ~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~v~~~~~~~~~~----  216 (299)
                                               |           .-..|+-.+.-|+..+..   .-+..|+||++..-....    
T Consensus       201 -------------------------A-----------kkRtNiiPIiEDArhP~KYRmlVgmVDvIFaDvaqpdq~Riva  244 (317)
T KOG1596|consen  201 -------------------------A-----------KKRTNIIPIIEDARHPAKYRMLVGMVDVIFADVAQPDQARIVA  244 (317)
T ss_pred             -------------------------h-----------hccCCceeeeccCCCchheeeeeeeEEEEeccCCCchhhhhhh
Confidence                                     1           124578888888875321   114689999887654332    


Q ss_pred             HHHHHhccCCcEEEEEecCC
Q psy7837         217 WHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       217 ~~~~~~L~~gG~lv~~~~~~  236 (299)
                      -+....||+||.+++++...
T Consensus       245 LNA~~FLk~gGhfvisikan  264 (317)
T KOG1596|consen  245 LNAQYFLKNGGHFVISIKAN  264 (317)
T ss_pred             hhhhhhhccCCeEEEEEecc
Confidence            36778899999999987543

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.82  E-value=7.6e-05  Score=64.55  Aligned_cols=46  Identities=20%  Similarity=0.288  Sum_probs=40.5

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .++.+|||+|||+|.++..+++..   .+|+++|+++.+++.++++...
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~   88 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEA   88 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHh
Confidence            456899999999999999999863   4799999999999999988765

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=97.82  E-value=5e-05  Score=57.15  Aligned_cols=45  Identities=31%  Similarity=0.419  Sum_probs=41.3

Q ss_pred             CCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          68 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        68 g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      |.+|||+|||+|.+...+++..  ..+++++|+++..++.++.++..
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~   45 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPR   45 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHH
T ss_pred             CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHH
Confidence            6799999999999999999886  57899999999999999998876

...

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.81  E-value=0.0003  Score=55.07  Aligned_cols=104  Identities=23%  Similarity=0.287  Sum_probs=66.4

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHH------cCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCC
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAY------MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAA  201 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~------~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  201 (299)
                      ...+...|+|+|||.|+++..++.      .+.+|+++|.++..++.+++..+....  ....+..+..++...... ..
T Consensus        22 ~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~   98 (141)
T PF13679_consen   22 ESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGS--DLEKRLSFIQGDIADESS-SD   98 (141)
T ss_pred             ccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcc--hhhccchhhccchhhhcc-cC
Confidence            346788999999999999999988      478899999999999999888876310  022566677666543222 24


Q ss_pred             CeeEEEecchhhhHHHHH-HHhccCCcEEEEEec
Q psy7837         202 PYDVIYISQAIRDIPWHI-VDQLKLGGRMLFIKG  234 (299)
Q Consensus       202 ~fD~v~~~~~~~~~~~~~-~~~L~~gG~lv~~~~  234 (299)
                      ..++++.--..-.+.+.+ ...++++-..++..+
T Consensus        99 ~~~~~vgLHaCG~Ls~~~l~~~~~~~~~~l~~vp  132 (141)
T PF13679_consen   99 PPDILVGLHACGDLSDRALRLFIRPNARFLVLVP  132 (141)
T ss_pred             CCeEEEEeecccchHHHHHHHHHHcCCCEEEEcC
Confidence            456666544333333222 222235544444433

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=97.79  E-value=7e-05  Score=65.53  Aligned_cols=72  Identities=22%  Similarity=0.383  Sum_probs=51.8

Q ss_pred             ccccccccCCcchHHHHHHHHhccCCCCC-EEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          41 NIGHNAFMESPSDHCLVLELLSGHLKYGD-KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        41 ~~~~~~~~~~p~~~~~~~~~l~~~~~~g~-~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .+..+..+..|.. ..+++.+...+...+ +|||+|||||..+..++.... ...|+++|+++..++.|+++...
T Consensus        84 ~v~~~vliPr~dT-e~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~  156 (280)
T COG2890          84 KVDEGVLIPRPDT-ELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAER  156 (280)
T ss_pred             eeCCCceecCCch-HHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHH
Confidence            3334444555554 344444322233333 799999999999999998875 36899999999999999999987

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=97.78  E-value=7.8e-05  Score=64.75  Aligned_cols=55  Identities=22%  Similarity=0.295  Sum_probs=45.0

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      ..+++.+.  +.++.+|||+|||+|..+..+++..  ..+++++|+++.+++.++++..
T Consensus        42 ~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~   96 (263)
T PTZ00098         42 TKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNS   96 (263)
T ss_pred             HHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcC
Confidence            44444443  7899999999999999999888754  3589999999999999987654

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.78  E-value=8.1e-05  Score=66.30  Aligned_cols=45  Identities=33%  Similarity=0.593  Sum_probs=39.3

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcC---CeEEEEeCChHHHHHHHHH
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMG---AKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~---~~v~~~D~~~~~~~~a~~~  172 (299)
                      .+.++.+|||+|||+|+++..+++..   ..|+++|+++.+++.++++
T Consensus        77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~  124 (322)
T PRK13943         77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRN  124 (322)
T ss_pred             CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHH
Confidence            45678999999999999999998863   3699999999999998875

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.76  E-value=0.00017  Score=63.08  Aligned_cols=84  Identities=19%  Similarity=0.198  Sum_probs=47.7

Q ss_pred             CCeEEEEcCCCc-HHHHHHHH-cCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC----CC-CCCCCee
Q psy7837         132 GSKVLDIGSGSG-YLSALFAY-MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR----GY-PDAAPYD  204 (299)
Q Consensus       132 ~~~vLDiG~G~G-~~~~~la~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~----~~-~~~~~fD  204 (299)
                      ..++||||||.. .+.+..++ .+++++|+|+++..++.|+++++.|.   ....+|+++...-..    .. .....||
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~---~L~~~I~l~~~~~~~~i~~~i~~~~e~~d  179 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNP---NLESRIELRKQKNPDNIFDGIIQPNERFD  179 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT----T-TTTEEEEE--ST-SSTTTSTT--S-EE
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcc---ccccceEEEEcCCccccchhhhcccceee
Confidence            568999999955 44554444 49999999999999999999999852   255678887664332    11 1235799


Q ss_pred             EEEecchhhhHHHH
Q psy7837         205 VIYISQAIRDIPWH  218 (299)
Q Consensus       205 ~v~~~~~~~~~~~~  218 (299)
                      +..|++++..-.++
T Consensus       180 ftmCNPPFy~s~~e  193 (299)
T PF05971_consen  180 FTMCNPPFYSSQEE  193 (299)
T ss_dssp             EEEE-----SS---
T ss_pred             EEecCCccccChhh
Confidence            99999998765543

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=97.75  E-value=0.0001  Score=60.13  Aligned_cols=47  Identities=26%  Similarity=0.294  Sum_probs=41.2

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..++.+|||+|||+|.++..+++...   +++++|+++.+++.+++++..
T Consensus        17 ~~~~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~   63 (179)
T TIGR00537        17 ELKPDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKL   63 (179)
T ss_pred             hcCCCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHH
Confidence            45678999999999999999988642   799999999999999998865

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=97.74  E-value=8.1e-05  Score=60.49  Aligned_cols=47  Identities=23%  Similarity=0.364  Sum_probs=38.9

Q ss_pred             hccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy7837          62 SGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK  110 (299)
Q Consensus        62 ~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~  110 (299)
                      .+.+.||.+|||+|||.|.+-..|.+.  ++...+|+|+++..+..+.+
T Consensus         8 ~~~I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~   54 (193)
T PF07021_consen    8 AEWIEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVA   54 (193)
T ss_pred             HHHcCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHH
Confidence            344889999999999999999888875  35689999999998766544

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=97.74  E-value=0.00013  Score=61.90  Aligned_cols=57  Identities=28%  Similarity=0.362  Sum_probs=45.0

Q ss_pred             HHHHHHHhc-cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSG-HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~-~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+++.+.. ...++.+|||+|||+|.++..+++..   .+++++|+++.+++.+++....
T Consensus        50 ~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~  107 (230)
T PRK07580         50 DTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPE  107 (230)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHh
Confidence            344455442 24578899999999999999998753   3599999999999999988765

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=97.73  E-value=0.00012  Score=65.12  Aligned_cols=57  Identities=23%  Similarity=0.240  Sum_probs=45.0

Q ss_pred             HHHHHHHhcc-CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGH-LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~-~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+++.+... -.++.+|||+|||+|.++..+++.   ..+++++|+++.+++.++++...
T Consensus       131 ~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~  188 (315)
T PLN02585        131 EKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKE  188 (315)
T ss_pred             HHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHh
Confidence            4455555421 136789999999999999999975   24799999999999999988765

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.71  E-value=0.00011  Score=62.92  Aligned_cols=65  Identities=28%  Similarity=0.279  Sum_probs=54.2

Q ss_pred             ccccc-CCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          44 HNAFM-ESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        44 ~~~~~-~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      .||+. .++.....+++...  +.+++.|||||+|.|.+|..|++...   +|+++|+++.+++..++.+.
T Consensus         8 ~GQnFL~d~~v~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~   73 (259)
T COG0030           8 LGQNFLIDKNVIDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFA   73 (259)
T ss_pred             cccccccCHHHHHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhcc
Confidence            35543 46667778887776  78899999999999999999999875   49999999999998888765

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=97.71  E-value=0.00014  Score=63.58  Aligned_cols=58  Identities=24%  Similarity=0.351  Sum_probs=43.8

Q ss_pred             HHHHHHHhccC-CCCCEEEEEccCCCHHHHHHHHHhCCC--ceEEEEeCCHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHL-KYGDKVLEIGTGSGYLTTLFGAMVGIS--GKVYTIEHIPELLEAARKRV  112 (299)
Q Consensus        55 ~~~~~~l~~~~-~~g~~vldiG~G~G~~~~~la~~~~~~--g~v~~~d~~~~~~~~a~~~l  112 (299)
                      ..+.+.+...+ ....+|||+|||+|+++..+++.+...  ..++|+|+++.+++.+.+..
T Consensus        72 ~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~  132 (272)
T PRK11088         72 DAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY  132 (272)
T ss_pred             HHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC
Confidence            44444444333 355789999999999999999877543  37999999999999887653

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=97.71  E-value=7.4e-05  Score=68.24  Aligned_cols=42  Identities=31%  Similarity=0.318  Sum_probs=37.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHH
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~  172 (299)
                      ++.+|||+|||+|.+++.+++.  +.+|+++|+|+.+++.+++|
T Consensus       251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreN  294 (423)
T PRK14966        251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKN  294 (423)
T ss_pred             CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence            4679999999999999998864  67899999999999999876

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=97.71  E-value=9.7e-05  Score=63.66  Aligned_cols=45  Identities=22%  Similarity=0.460  Sum_probs=38.1

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      .++.+|||+|||+|.++..+++.   ..+++++|+++.+++.+++...
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~   85 (251)
T PRK10258         41 RKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA   85 (251)
T ss_pred             cCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC
Confidence            35789999999999999988764   3589999999999999887643

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.70  E-value=0.00018  Score=63.81  Aligned_cols=74  Identities=15%  Similarity=0.229  Sum_probs=52.8

Q ss_pred             cccccccccCCcchHHHHHHHHhccCC--CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          40 HNIGHNAFMESPSDHCLVLELLSGHLK--YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        40 ~~~~~~~~~~~p~~~~~~~~~l~~~~~--~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+..+..+..|.....+...+...+.  +..+|||+|||+|.++..++... +..+++++|+++.+++.+++++..
T Consensus       104 f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~  179 (307)
T PRK11805        104 FYVDERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIER  179 (307)
T ss_pred             EEECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH
Confidence            334444555555554444444432222  23689999999999999998865 346899999999999999999876

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=97.70  E-value=0.00014  Score=66.04  Aligned_cols=57  Identities=16%  Similarity=0.294  Sum_probs=46.6

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.+++.+.  ...+.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++..
T Consensus       218 rllL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~  274 (378)
T PRK15001        218 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVET  274 (378)
T ss_pred             HHHHHhCC--cccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence            55556554  2334699999999999999999875 457999999999999999998865

>KOG0820|consensus

Probab=97.70  E-value=0.0001  Score=62.55  Aligned_cols=69  Identities=30%  Similarity=0.352  Sum_probs=57.3

Q ss_pred             ccccccccC-CcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          41 NIGHNAFME-SPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        41 ~~~~~~~~~-~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +...||.+. .|.+...+++...  +++++.|||+|.|+|.+|..+.+...   .|+++|+++.|+....++...
T Consensus        33 nkd~GQHilkNp~v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~~k---kVvA~E~Dprmvael~krv~g  102 (315)
T KOG0820|consen   33 NKDFGQHILKNPLVIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEAGK---KVVAVEIDPRMVAELEKRVQG  102 (315)
T ss_pred             ccccchhhhcCHHHHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHhcC---eEEEEecCcHHHHHHHHHhcC
Confidence            445677664 5666677776665  99999999999999999999998765   599999999999998888876

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=97.70  E-value=6.4e-05  Score=63.00  Aligned_cols=46  Identities=24%  Similarity=0.352  Sum_probs=41.2

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .+|.+|||+|||.|.++..+|+.-   ..|+|+|+++..++.|+....+
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e  103 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALE  103 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhh
Confidence            489999999999999999999865   4699999999999999977766

>TIGR00536 hemK_fam HemK family putative methylases

Probab=97.70  E-value=0.00016  Score=63.57  Aligned_cols=46  Identities=22%  Similarity=0.382  Sum_probs=40.8

Q ss_pred             CCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          68 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        68 g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.+|||+|||+|..+..++.... ..+++++|+++..++.+++++..
T Consensus       115 ~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~  160 (284)
T TIGR00536       115 ILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEK  160 (284)
T ss_pred             CCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHH
Confidence            36999999999999999998763 46899999999999999998875

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK14968 putative methyltransferase; Provisional

Probab=97.69  E-value=0.00021  Score=58.47  Aligned_cols=55  Identities=35%  Similarity=0.421  Sum_probs=45.6

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+++.+.  ..++.+|||+|||+|.++..+++.   ..+++++|+++.+++.+++++..
T Consensus        13 ~~l~~~~~--~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~   67 (188)
T PRK14968         13 FLLAENAV--DKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKL   67 (188)
T ss_pred             HHHHHhhh--ccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHH
Confidence            34445554  478899999999999999999887   36899999999999999888764

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=97.68  E-value=0.00016  Score=64.93  Aligned_cols=61  Identities=23%  Similarity=0.250  Sum_probs=49.6

Q ss_pred             CCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          49 ESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        49 ~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..|.+...++....  +++|++|||.|||+|.+...++..   ..+++++|+++.+++.++.++..
T Consensus       166 l~~~la~~~~~l~~--~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~  226 (329)
T TIGR01177       166 MDPKLARAMVNLAR--VTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEH  226 (329)
T ss_pred             CCHHHHHHHHHHhC--CCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHH
Confidence            45666666666554  889999999999999998776654   35799999999999999998876

This family is found exclusively in the Archaea.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.67  E-value=0.00035  Score=60.99  Aligned_cols=84  Identities=20%  Similarity=0.224  Sum_probs=52.8

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCee
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYD  204 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  204 (299)
                      ......+|||+|||.|..+..+...   -.+++++|.|+.+++.++..++...    ....... ..+......+..+.|
T Consensus        30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~----~~~~~~~-~~~~~~~~~~~~~~D  104 (274)
T PF09243_consen   30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP----NNRNAEW-RRVLYRDFLPFPPDD  104 (274)
T ss_pred             cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc----ccccchh-hhhhhcccccCCCCc
Confidence            3456789999999999877665543   3469999999999999998876621    1111111 111111111112349


Q ss_pred             EEEecchhhhHH
Q psy7837         205 VIYISQAIRDIP  216 (299)
Q Consensus       205 ~v~~~~~~~~~~  216 (299)
                      +|++..++..++
T Consensus       105 Lvi~s~~L~EL~  116 (274)
T PF09243_consen  105 LVIASYVLNELP  116 (274)
T ss_pred             EEEEehhhhcCC
Confidence            999999875444

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=97.67  E-value=0.00019  Score=61.09  Aligned_cols=58  Identities=26%  Similarity=0.513  Sum_probs=48.2

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+++.+.  ..++.+|||+|||+|.++..++...+...+++++|+++.+++.+++++..
T Consensus        41 ~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~   98 (239)
T PRK00216         41 RKTIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRD   98 (239)
T ss_pred             HHHHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcc
Confidence            44555554  56789999999999999999999886568999999999999999887654

>KOG2198|consensus

Probab=97.67  E-value=0.0006  Score=60.60  Aligned_cols=59  Identities=24%  Similarity=0.238  Sum_probs=44.3

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHHH
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGI---SGKVYTIEHIPELLEAARKRV  112 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~---~g~v~~~d~~~~~~~~a~~~l  112 (299)
                      ...++.-|.-.++||++|||+++.+|.-|..+.+.+..   .|.+++=|.+..-...-+..+
T Consensus       142 avSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~  203 (375)
T KOG2198|consen  142 AVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQL  203 (375)
T ss_pred             hhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHH
Confidence            34444334335899999999999999999998887764   368999998877666555555

>PHA03412 putative methyltransferase; Provisional

Probab=97.67  E-value=7.1e-05  Score=63.11  Aligned_cols=67  Identities=13%  Similarity=0.044  Sum_probs=51.7

Q ss_pred             ccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhC--CCceEEEEeCCHHHHHHHHHHHH
Q psy7837          43 GHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVG--ISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        43 ~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~--~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      ..|++...+.+.+.+...    ...+.+|||+|||+|.++..+++.+.  +...++++|+++.+++.+++++.
T Consensus        29 ~~GqFfTP~~iAr~~~i~----~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~   97 (241)
T PHA03412         29 ELGAFFTPIGLARDFTID----ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP   97 (241)
T ss_pred             cCCccCCCHHHHHHHHHh----ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc
Confidence            357777777776655322    23478999999999999999988653  24689999999999999997753

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.66  E-value=0.00016  Score=56.51  Aligned_cols=56  Identities=27%  Similarity=0.311  Sum_probs=47.2

Q ss_pred             eEEEEcCCCcHHHHHHHHcCC--eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCC
Q psy7837         134 KVLDIGSGSGYLSALFAYMGA--KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGR  194 (299)
Q Consensus       134 ~vLDiG~G~G~~~~~la~~~~--~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  194 (299)
                      +++|+|||.|.++..+++.+.  +++++|.++.+.+.++++++.+     ...++.++...+.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n-----~~~~v~~~~~al~   58 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLN-----NLPNVVLLNAAVG   58 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHc-----CCCcEEEEEeeee
Confidence            489999999999999998864  5999999999999999999873     4456777776654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=97.65  E-value=0.00014  Score=64.01  Aligned_cols=54  Identities=22%  Similarity=0.283  Sum_probs=42.5

Q ss_pred             HHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          56 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        56 ~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .+++.+. .++ +.+|||+|||+|..+..+++..   .+|+++|+++.+++.++++...
T Consensus       111 ~~~~~~~-~~~-~~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~  164 (287)
T PRK12335        111 EVLEAVQ-TVK-PGKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEK  164 (287)
T ss_pred             HHHHHhh-ccC-CCCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHH
Confidence            3444443 234 4599999999999999998852   5799999999999999887765

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=97.64  E-value=0.00011  Score=65.41  Aligned_cols=45  Identities=24%  Similarity=0.400  Sum_probs=38.8

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      .+|.+|||||||+|.++..+++.   ..+|+++|.++.+++.++....
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~  174 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHAD  174 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHH
Confidence            46789999999999999999864   3579999999999999987654

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=97.63  E-value=0.00015  Score=59.99  Aligned_cols=48  Identities=25%  Similarity=0.303  Sum_probs=38.2

Q ss_pred             HhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy7837          61 LSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK  110 (299)
Q Consensus        61 l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~  110 (299)
                      +...+.++++|||+|||+|.++..+++..+  ..++++|+++.+++.++.
T Consensus         7 i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~   54 (194)
T TIGR02081         7 ILNLIPPGSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVA   54 (194)
T ss_pred             HHHhcCCCCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHH
Confidence            333466889999999999999998876543  357999999999887753

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=97.62  E-value=0.00025  Score=60.28  Aligned_cols=63  Identities=21%  Similarity=0.331  Sum_probs=52.1

Q ss_pred             CcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          50 SPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        50 ~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ++.+-+.++..... +....+|||+|||+|.++..++++..+ .++.++|+++++.+.|++++..
T Consensus        28 ~~~~DaiLL~~~~~-~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~l   90 (248)
T COG4123          28 RYGTDAILLAAFAP-VPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVAL   90 (248)
T ss_pred             ccccHHHHHHhhcc-cccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHh
Confidence            34444666666654 444889999999999999999998654 7999999999999999999976

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.62  E-value=0.00063  Score=57.26  Aligned_cols=102  Identities=17%  Similarity=0.189  Sum_probs=60.9

Q ss_pred             CCCCeEEEEcCCCc-HHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCC--CCeeEE
Q psy7837         130 VYGSKVLDIGSGSG-YLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDA--APYDVI  206 (299)
Q Consensus       130 ~~~~~vLDiG~G~G-~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~fD~v  206 (299)
                      ..|++||-+|=..- +++..+.....+|+.+|+++.+++..++.++.     .+.. ++.+..|....+++.  ++||++
T Consensus        43 L~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~-----~gl~-i~~~~~DlR~~LP~~~~~~fD~f  116 (243)
T PF01861_consen   43 LEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEE-----EGLP-IEAVHYDLRDPLPEELRGKFDVF  116 (243)
T ss_dssp             STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHH-----HT---EEEE---TTS---TTTSS-BSEE
T ss_pred             ccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHH-----cCCc-eEEEEecccccCCHHHhcCCCEE
Confidence            56899999995543 33334445577899999999999999999887     3444 999999999877764  899999


Q ss_pred             Eecchh-----hhHHHHHHHhccCCc-EEEEEecCCC
Q psy7837         207 YISQAI-----RDIPWHIVDQLKLGG-RMLFIKGHED  237 (299)
Q Consensus       207 ~~~~~~-----~~~~~~~~~~L~~gG-~lv~~~~~~~  237 (299)
                      +.+++.     .-+..+....||..| ..++......
T Consensus       117 ~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~  153 (243)
T PF01861_consen  117 FTDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKE  153 (243)
T ss_dssp             EE---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT
T ss_pred             EeCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCc
Confidence            999975     334467777887755 6666665544

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.62  E-value=0.0018  Score=56.25  Aligned_cols=60  Identities=22%  Similarity=0.211  Sum_probs=53.9

Q ss_pred             hHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          53 DHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        53 ~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +...+++.|.  ++++...+|..-|.|..+..+.+.++..|+++++|.++..++.+++.+..
T Consensus        11 Ll~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~   70 (314)
T COG0275          11 LLNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE   70 (314)
T ss_pred             HHHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc
Confidence            4566677776  78999999999999999999999999889999999999999999998876

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=97.61  E-value=0.00014  Score=63.55  Aligned_cols=46  Identities=35%  Similarity=0.507  Sum_probs=39.0

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHc-C--CeEEEEeCChHHHHHHHHH
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYM-G--AKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~-~--~~v~~~D~~~~~~~~a~~~  172 (299)
                      ..+.++.+|||+|||+|..+..+++. +  .+|+++|+++.+++.++++
T Consensus        73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~  121 (272)
T PRK11873         73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARAN  121 (272)
T ss_pred             ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHH
Confidence            45678999999999999988877664 3  4699999999999999875

>KOG2904|consensus

Probab=97.61  E-value=0.00036  Score=59.45  Aligned_cols=83  Identities=16%  Similarity=0.197  Sum_probs=64.8

Q ss_pred             CcccccccccccccccccCCcch---HHHHHHHHh-ccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHH
Q psy7837          31 PVLTLLDIPHNIGHNAFMESPSD---HCLVLELLS-GHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLE  106 (299)
Q Consensus        31 ~~~~y~~~~~~~~~~~~~~~p~~---~~~~~~~l~-~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~  106 (299)
                      .+..+.|..+....|..+..|..   +..+++.+. +....+..+||+|||+|..+..++..++ +++++++|.++..+.
T Consensus       108 g~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~  186 (328)
T KOG2904|consen  108 GSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIK  186 (328)
T ss_pred             ccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHH
Confidence            44456666666777888888876   344444442 2234566899999999999999999998 799999999999999


Q ss_pred             HHHHHHHH
Q psy7837         107 AARKRVKA  114 (299)
Q Consensus       107 ~a~~~l~~  114 (299)
                      .|.++..+
T Consensus       187 La~eN~qr  194 (328)
T KOG2904|consen  187 LAKENAQR  194 (328)
T ss_pred             HHHHHHHH
Confidence            99998877

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=97.61  E-value=0.00032  Score=60.48  Aligned_cols=59  Identities=14%  Similarity=0.187  Sum_probs=45.4

Q ss_pred             HHHHHHHhccCC---CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLK---YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~~---~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+++.+...+.   ++.+|||+|||+|.++..+++... ..+++++|+++.+++.+++++..
T Consensus        71 e~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~  132 (251)
T TIGR03704        71 EFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLAD  132 (251)
T ss_pred             HHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHH
Confidence            445544433222   345899999999999999987753 35799999999999999999875

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=97.61  E-value=0.00015  Score=61.79  Aligned_cols=51  Identities=20%  Similarity=0.278  Sum_probs=42.6

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHH
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNI  173 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~  173 (299)
                      +..+....++++|||+|||+|+.++.+++.   +.+++++|+++.+++.|++++
T Consensus        60 L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~  113 (234)
T PLN02781         60 LSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFI  113 (234)
T ss_pred             HHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH
Confidence            444555677899999999999998888764   468999999999999999873

>TIGR00452 methyltransferase, putative

Probab=97.59  E-value=0.00021  Score=63.40  Aligned_cols=43  Identities=21%  Similarity=0.214  Sum_probs=35.4

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAAR  109 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~  109 (299)
                      ..+|.+|||+|||+|+++..++....  ..++|+|.++.++..+.
T Consensus       119 ~~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~  161 (314)
T TIGR00452       119 PLKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFE  161 (314)
T ss_pred             CCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHH
Confidence            57789999999999999888876532  47999999999987543

Known examples to date are restricted to the proteobacteria.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.59  E-value=0.00044  Score=57.19  Aligned_cols=106  Identities=25%  Similarity=0.322  Sum_probs=78.0

Q ss_pred             Hhhhccc-CCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC
Q psy7837         123 INFYGHL-VYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD  199 (299)
Q Consensus       123 ~~~~~~~-~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  199 (299)
                      +...+.+ ..+.+++|+||--++++..+.+.+  ..+++.|+++..++.|.+++..+    ....+++...+|.......
T Consensus         7 L~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~----~l~~~i~vr~~dgl~~l~~   82 (226)
T COG2384           7 LTTVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKN----NLSERIDVRLGDGLAVLEL   82 (226)
T ss_pred             HHHHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhc----CCcceEEEeccCCccccCc
Confidence            3344443 446679999999999999999885  46999999999999999999886    6778999999999766555


Q ss_pred             CCCeeEEEecch----hhhHHHHHHHhccCCcEEEEE
Q psy7837         200 AAPYDVIYISQA----IRDIPWHIVDQLKLGGRMLFI  232 (299)
Q Consensus       200 ~~~fD~v~~~~~----~~~~~~~~~~~L~~gG~lv~~  232 (299)
                      ...+|.+++.++    ...+.++-...|+.==++++.
T Consensus        83 ~d~~d~ivIAGMGG~lI~~ILee~~~~l~~~~rlILQ  119 (226)
T COG2384          83 EDEIDVIVIAGMGGTLIREILEEGKEKLKGVERLILQ  119 (226)
T ss_pred             cCCcCEEEEeCCcHHHHHHHHHHhhhhhcCcceEEEC
Confidence            557898876554    234445555555433345444

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=97.58  E-value=0.00018  Score=59.47  Aligned_cols=47  Identities=21%  Similarity=0.198  Sum_probs=41.5

Q ss_pred             CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          67 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        67 ~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ...++||+|||+|.++..+++.. ++..++++|++..+++.+++.+..
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~   62 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANK   62 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHH
Confidence            45689999999999999999875 467999999999999999888765

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=97.58  E-value=0.00033  Score=55.60  Aligned_cols=50  Identities=32%  Similarity=0.536  Sum_probs=41.3

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEA  107 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~  107 (299)
                      ...++.+.+...++.+|||+|||.|.++..+++. +.  +++++|+++.+++.
T Consensus        10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~--~~~g~D~~~~~~~~   59 (161)
T PF13489_consen   10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR-GF--EVTGVDISPQMIEK   59 (161)
T ss_dssp             HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT-TS--EEEEEESSHHHHHH
T ss_pred             HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh-CC--EEEEEECCHHHHhh
Confidence            4556666655788999999999999999999665 33  89999999999987

...

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.57  E-value=0.0014  Score=50.98  Aligned_cols=97  Identities=27%  Similarity=0.346  Sum_probs=66.4

Q ss_pred             EEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC--CCCCC-CCeeEEEe
Q psy7837         135 VLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR--GYPDA-APYDVIYI  208 (299)
Q Consensus       135 vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~-~~fD~v~~  208 (299)
                      ++|+|||+|... .+...   +..++++|.++.++...+......     ....+.+...|...  ..... ..||++..
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  125 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGA-----GLGLVDFVVADALGGVLPFEDSASFDLVIS  125 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhc-----CCCceEEEEeccccCCCCCCCCCceeEEee
Confidence            999999999976 33333   347999999999998854443110     00116778888765  23332 37999944


Q ss_pred             cchh-----hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         209 SQAI-----RDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       209 ~~~~-----~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      ....     .....++.+.|+++|.+++......
T Consensus       126 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  159 (257)
T COG0500         126 LLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD  159 (257)
T ss_pred             eeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence            4443     4566789999999999999877654

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.57  E-value=0.00013  Score=52.20  Aligned_cols=41  Identities=37%  Similarity=0.527  Sum_probs=35.3

Q ss_pred             EEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          72 LEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        72 ldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ||+|||+|..+..+++.  +...++++|+++.+++.+++....
T Consensus         1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~   41 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKN   41 (95)
T ss_dssp             EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTT
T ss_pred             CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccc
Confidence            79999999999999998  457899999999999999988765

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.56  E-value=0.0002  Score=60.36  Aligned_cols=117  Identities=19%  Similarity=0.253  Sum_probs=64.4

Q ss_pred             eEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCC--CeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHH
Q psy7837          94 KVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYG--SKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMK  171 (299)
Q Consensus        94 ~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~--~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~  171 (299)
                      .-+.+|+.+.....-++......+.+.+    -..+.++  .+|||.-+|-|.-++.++..|++|+++|.|+.+....+.
T Consensus        40 ~p~~vDF~~g~~~~R~~~~~g~~~~l~k----A~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~d  115 (234)
T PF04445_consen   40 GPLFVDFHPGAAAYRRKHGGGKGDPLAK----AVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKD  115 (234)
T ss_dssp             -EE---SSSHHHHHHHHHSSGGGSHHHH----HTT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHH
T ss_pred             CCEEEEcCCcHHHHHHhhcCCCccHHHH----HhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHH
Confidence            3677788877665555433221223332    3344444  399999999999999999999999999999988766665


Q ss_pred             HHHhcCCcc----cCCCCeEEEEcCCCCCCC-CCCCeeEEEecchhhh
Q psy7837         172 NIRRGAPAI----ALAENFEFVCADGRRGYP-DAAPYDVIYISQAIRD  214 (299)
Q Consensus       172 ~~~~~~~~~----~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~~~~  214 (299)
                      -+++...+.    ....+++++++|..+.+. +..+||+|++++.+.+
T Consensus       116 GL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY~DPMFp~  163 (234)
T PF04445_consen  116 GLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVYFDPMFPE  163 (234)
T ss_dssp             HHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEEE--S---
T ss_pred             HHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEEECCCCCC
Confidence            443321110    112589999999886443 3478999999998754

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=97.55  E-value=0.00027  Score=63.26  Aligned_cols=52  Identities=27%  Similarity=0.208  Sum_probs=39.2

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK  110 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~  110 (299)
                      ..+...+.  ...|.+|||+|||+|+++..++....  ..|+|+|.++.++...+.
T Consensus       112 ~~l~~~l~--~l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a  163 (322)
T PRK15068        112 DRVLPHLS--PLKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEA  163 (322)
T ss_pred             HHHHHhhC--CCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHH
Confidence            34444443  35689999999999999999887632  369999999998865443

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=97.55  E-value=0.00034  Score=62.98  Aligned_cols=57  Identities=25%  Similarity=0.348  Sum_probs=46.0

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.+++.+..  ....+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++..
T Consensus       186 ~lLl~~l~~--~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~  242 (342)
T PRK09489        186 QLLLSTLTP--HTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAA  242 (342)
T ss_pred             HHHHHhccc--cCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence            455555542  334589999999999999999875 346899999999999999998876

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=97.55  E-value=0.00023  Score=63.51  Aligned_cols=61  Identities=11%  Similarity=0.061  Sum_probs=47.2

Q ss_pred             cchHHHHHHHHhccC--CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          51 PSDHCLVLELLSGHL--KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        51 p~~~~~~~~~l~~~~--~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.....+++.+.+.+  .++.+|||+|||+|.++..+++..   .+++++|+++.+++.+++++..
T Consensus       155 ~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~  217 (315)
T PRK03522        155 PAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAE  217 (315)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHH
Confidence            334455554443322  357899999999999999999843   4799999999999999998876

>KOG2899|consensus

Probab=97.54  E-value=0.00014  Score=60.86  Aligned_cols=47  Identities=32%  Similarity=0.437  Sum_probs=41.9

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHc-CCe-EEEEeCChHHHHHHHHHHHh
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYM-GAK-VYAIEHVKNLCKRAMKNIRR  175 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~-~~~-v~~~D~~~~~~~~a~~~~~~  175 (299)
                      ...+..+|||||.+|.+++.+++. +++ +.|+|+++..+..|+++++.
T Consensus        56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~  104 (288)
T KOG2899|consen   56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF  104 (288)
T ss_pred             ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence            356789999999999999999987 554 99999999999999999865

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=97.53  E-value=0.00049  Score=59.09  Aligned_cols=58  Identities=29%  Similarity=0.369  Sum_probs=45.2

Q ss_pred             HHHHHHhccC-CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          56 LVLELLSGHL-KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        56 ~~~~~l~~~~-~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .+++.+.+.+ ..+.+|||+|||+|.++..+++... ..+++++|+++.+++.+++++..
T Consensus        75 ~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~  133 (251)
T TIGR03534        75 ELVEAALERLKKGPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAAR  133 (251)
T ss_pred             HHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHH
Confidence            3444443333 3345899999999999999998753 46899999999999999988865

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=97.53  E-value=0.00019  Score=60.20  Aligned_cols=41  Identities=15%  Similarity=0.035  Sum_probs=35.9

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAAR  109 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~  109 (299)
                      .++.+|||+|||.|..+.+|++..-   .|+|+|+++..++.+.
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~   73 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFF   73 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHH
Confidence            5788999999999999999997533   6999999999999753

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=97.53  E-value=0.00034  Score=57.40  Aligned_cols=55  Identities=24%  Similarity=0.285  Sum_probs=41.4

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+++.+.  ..++.++||+|||.|..+.+||+..-   .|+++|+++..++.+.+...+
T Consensus        20 s~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~   74 (192)
T PF03848_consen   20 SEVLEAVP--LLKPGKALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEE   74 (192)
T ss_dssp             HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHH
T ss_pred             HHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhh
Confidence            34455443  44567999999999999999998744   599999999999988776654

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=97.53  E-value=0.00052  Score=61.54  Aligned_cols=46  Identities=24%  Similarity=0.390  Sum_probs=40.2

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV  112 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l  112 (299)
                      .++.+|||+|||+|.++..+++..+ ..+++++|.++.+++.++++.
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~  157 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE  157 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhh
Confidence            5788999999999999999988764 368999999999999888764

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=97.51  E-value=0.00033  Score=60.94  Aligned_cols=58  Identities=31%  Similarity=0.442  Sum_probs=49.7

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .+.+++.|.  ...+.+|||+|||.|.++..+++..+ ..+++-+|++...++.+++++..
T Consensus       147 S~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~  204 (300)
T COG2813         147 SRLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAA  204 (300)
T ss_pred             HHHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHH
Confidence            356667766  44455999999999999999999876 68999999999999999999986

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.51  E-value=0.00049  Score=60.04  Aligned_cols=48  Identities=33%  Similarity=0.465  Sum_probs=42.7

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      ..++.+|||+|||+|..+..++... +..+++++|+++.+++.+++++.
T Consensus       106 ~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~  153 (275)
T PRK09328        106 LKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAK  153 (275)
T ss_pred             ccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHH
Confidence            4577899999999999999999877 35789999999999999998876

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=97.51  E-value=0.0007  Score=56.14  Aligned_cols=56  Identities=14%  Similarity=0.084  Sum_probs=43.3

Q ss_pred             HHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          56 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        56 ~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .++..+.. ..++.+|||+|||+|.++..+....  ..+++++|+++..++.+++++..
T Consensus        43 ~l~~~l~~-~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~   98 (199)
T PRK10909         43 TLFNWLAP-VIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLAT   98 (199)
T ss_pred             HHHHHHhh-hcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHH
Confidence            34555542 3568899999999999998543332  25899999999999999998876

>PRK04457 spermidine synthase; Provisional

Probab=97.50  E-value=0.00094  Score=57.94  Aligned_cols=48  Identities=21%  Similarity=0.365  Sum_probs=42.0

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      ..++.+|||+|||+|.++.++++.. +..+++++|+++.+++.+++.+.
T Consensus        64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~  111 (262)
T PRK04457         64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFE  111 (262)
T ss_pred             CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcC
Confidence            3456799999999999999999876 46789999999999999998764

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.49  E-value=0.0023  Score=56.92  Aligned_cols=56  Identities=13%  Similarity=0.171  Sum_probs=36.9

Q ss_pred             HHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHHHH
Q psy7837          58 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGI---SGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        58 ~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~---~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      ...+.+.+.++..++|+|||+|.-+..|.+.+.+   .-+.+++|++..+++.+.+.+.
T Consensus        67 ~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~  125 (319)
T TIGR03439        67 SSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELP  125 (319)
T ss_pred             HHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhh
Confidence            3344455678889999999999988877765532   2345556666555555555554

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.49  E-value=0.00099  Score=57.73  Aligned_cols=98  Identities=26%  Similarity=0.340  Sum_probs=62.6

Q ss_pred             CCeEEEEcCCCcHHHH-HHHHc---CCeEEEEeCChHHHHHHHHHHH-hcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837         132 GSKVLDIGSGSGYLSA-LFAYM---GAKVYAIEHVKNLCKRAMKNIR-RGAPAIALAENFEFVCADGRRGYPDAAPYDVI  206 (299)
Q Consensus       132 ~~~vLDiG~G~G~~~~-~la~~---~~~v~~~D~~~~~~~~a~~~~~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  206 (299)
                      ..+|+=||||.=.+|. .+++.   +..|+++|+++.+.+.+++.+. ..    +...++.|+.+|......+-..||+|
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~----~L~~~m~f~~~d~~~~~~dl~~~DvV  196 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL----GLSKRMSFITADVLDVTYDLKEYDVV  196 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH-------HH-SSEEEEES-GGGG-GG----SEE
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc----cccCCeEEEecchhccccccccCCEE
Confidence            3599999999776665 44543   4679999999999999999877 21    35678999999987544333679999


Q ss_pred             Eecchhh-------hHHHHHHHhccCCcEEEEEe
Q psy7837         207 YISQAIR-------DIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       207 ~~~~~~~-------~~~~~~~~~L~~gG~lv~~~  233 (299)
                      +..+...       .+.+++.+.++||..+++-.
T Consensus       197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs  230 (276)
T PF03059_consen  197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVVRS  230 (276)
T ss_dssp             EE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred             EEhhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence            9887653       57789999999999888863

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=97.48  E-value=0.00046  Score=57.96  Aligned_cols=56  Identities=29%  Similarity=0.456  Sum_probs=45.7

Q ss_pred             HHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          56 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        56 ~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      .+++.+.  ..++.+|||+|||+|.++..+++..+..++++++|+++.+++.++++..
T Consensus        30 ~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~   85 (223)
T TIGR01934        30 RAVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE   85 (223)
T ss_pred             HHHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc
Confidence            3344443  4578999999999999999999888655799999999999998887664

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>KOG2671|consensus

Probab=97.47  E-value=0.00024  Score=62.25  Aligned_cols=108  Identities=19%  Similarity=0.173  Sum_probs=82.2

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHH-------HHHHHHHhcCCcccCCCCeEEEEcCCCCC-C
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCK-------RAMKNIRRGAPAIALAENFEFVCADGRRG-Y  197 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~-------~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~  197 (299)
                      .+...+|+-|.|--.|||.+....+..|+-|+|.|++=.++.       ..+.|+++++   ....-+.+..+|.... +
T Consensus       203 ~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg---~~~~fldvl~~D~sn~~~  279 (421)
T KOG2671|consen  203 QAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYG---SSSQFLDVLTADFSNPPL  279 (421)
T ss_pred             hhccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhC---CcchhhheeeecccCcch
Confidence            345688999999999999999999999999999999988776       3566777752   1234467778887753 3


Q ss_pred             CCCCCeeEEEecchhh---------------------------------------hHHHHHHHhccCCcEEEEEecCC
Q psy7837         198 PDAAPYDVIYISQAIR---------------------------------------DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       198 ~~~~~fD~v~~~~~~~---------------------------------------~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      -....||.|+|+++.-                                       .+..-..++|..||++++-.+..
T Consensus       280 rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~  357 (421)
T KOG2671|consen  280 RSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI  357 (421)
T ss_pred             hhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence            3346899999998731                                       12234678999999999977754

>KOG1270|consensus

Probab=97.46  E-value=0.00015  Score=61.37  Aligned_cols=41  Identities=27%  Similarity=0.531  Sum_probs=37.4

Q ss_pred             CCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837          68 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        68 g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~  111 (299)
                      |.+|||+|||+|-++.-|++.-.   .|.|+|.++.+++.|+.-
T Consensus        90 g~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h  130 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEH  130 (282)
T ss_pred             CceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHh
Confidence            58899999999999999998753   699999999999999987

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=97.46  E-value=0.00051  Score=58.75  Aligned_cols=55  Identities=33%  Similarity=0.417  Sum_probs=43.8

Q ss_pred             HHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHH
Q psy7837         119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNI  173 (299)
Q Consensus       119 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~  173 (299)
                      -...|.....+.||.+|+|.|+|+|.++..+++.   ...|+..|..++..+.|++|+
T Consensus        28 D~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~   85 (247)
T PF08704_consen   28 DISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNF   85 (247)
T ss_dssp             HHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHH
Confidence            3456777888999999999999999999999986   358999999999999999984

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK06922 hypothetical protein; Provisional

Probab=97.46  E-value=0.00047  Score=66.20  Aligned_cols=49  Identities=16%  Similarity=0.458  Sum_probs=42.5

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.++.+|||+|||+|.++..+++.. +.+.++++|+++.+++.++++...
T Consensus       416 ~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~  464 (677)
T PRK06922        416 YIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQN  464 (677)
T ss_pred             hcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhh
Confidence            4578999999999999999888875 468999999999999999877643

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.43  E-value=0.00014  Score=60.34  Aligned_cols=59  Identities=15%  Similarity=0.266  Sum_probs=46.6

Q ss_pred             cCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837          48 MESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        48 ~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~  111 (299)
                      .+-|.+.+.++..+.  ..+=.++||+|||+|-.+..+-....   ++.|+|+|+.|++.|.+.
T Consensus       108 Y~vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eK  166 (287)
T COG4976         108 YSVPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEK  166 (287)
T ss_pred             CccHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhc
Confidence            345666666666655  44567999999999999999988775   599999999999988654

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=97.43  E-value=0.0004  Score=60.37  Aligned_cols=47  Identities=19%  Similarity=0.225  Sum_probs=37.3

Q ss_pred             CCCCEEEEEccCCCH----HHHHHHHHhCC----CceEEEEeCCHHHHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGY----LTTLFGAMVGI----SGKVYTIEHIPELLEAARKRV  112 (299)
Q Consensus        66 ~~g~~vldiG~G~G~----~~~~la~~~~~----~g~v~~~d~~~~~~~~a~~~l  112 (299)
                      .++.+|||+|||+|.    ++..+++....    +.+++|+|+++.+++.|++.+
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~  152 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI  152 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence            355799999999996    45566665432    468999999999999999865

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=97.42  E-value=0.00048  Score=64.27  Aligned_cols=61  Identities=20%  Similarity=0.232  Sum_probs=48.1

Q ss_pred             cchHHHHHHHHhcc--CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          51 PSDHCLVLELLSGH--LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        51 p~~~~~~~~~l~~~--~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.....+++.+...  +.++++|||+|||+|.++..+++..   .+++++|+++.+++.+++++..
T Consensus       274 ~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~  336 (431)
T TIGR00479       274 SGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAEL  336 (431)
T ss_pred             HHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHH
Confidence            33444455544432  4678899999999999999999864   3799999999999999998865

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>KOG1331|consensus

Probab=97.41  E-value=0.00015  Score=62.21  Aligned_cols=98  Identities=18%  Similarity=0.163  Sum_probs=75.6

Q ss_pred             hhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCe-EEEEcCCCCCCCCCCCe
Q psy7837         125 FYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENF-EFVCADGRRGYPDAAPY  203 (299)
Q Consensus       125 ~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~f  203 (299)
                      |+.....+..++|+|||.|-.+..-  ..+-++++|++...+..+++.            +. ....+|+...+....+|
T Consensus        39 fl~~~~~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~------------~~~~~~~ad~l~~p~~~~s~  104 (293)
T KOG1331|consen   39 FLDSQPTGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRS------------GGDNVCRADALKLPFREESF  104 (293)
T ss_pred             HHhccCCcceeeecccCCcccCcCC--CcceeeecchhhhhccccccC------------CCceeehhhhhcCCCCCCcc
Confidence            3444456889999999998765433  345699999999888777543            22 56778888777777899


Q ss_pred             eEEEecchhhhHH---------HHHHHhccCCcEEEEEecCC
Q psy7837         204 DVIYISQAIRDIP---------WHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       204 D~v~~~~~~~~~~---------~~~~~~L~~gG~lv~~~~~~  236 (299)
                      |.++...+++|+.         +++.+.|+|||...+.+...
T Consensus       105 d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~  146 (293)
T KOG1331|consen  105 DAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL  146 (293)
T ss_pred             ccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence            9999999988765         58899999999988876654

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.41  E-value=0.00058  Score=53.43  Aligned_cols=51  Identities=27%  Similarity=0.438  Sum_probs=43.8

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHHHHHh
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMV---GISGKVYTIEHIPELLEAARKRVKAK  115 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~---~~~g~v~~~d~~~~~~~~a~~~l~~~  115 (299)
                      ..+...|+|+|||.||++..++..+   .++-+++++|.++.+.+.+.+.....
T Consensus        23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~   76 (141)
T PF13679_consen   23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKL   76 (141)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHh
Confidence            3678899999999999999999954   34569999999999999988887764

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.40  E-value=1.3e-05  Score=58.50  Aligned_cols=42  Identities=29%  Similarity=0.471  Sum_probs=35.8

Q ss_pred             EEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          72 LEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        72 ldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ||+|||+|.++..+.+.. +..+++++|+++.+++.+++++..
T Consensus         1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~   42 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAE   42 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHH
T ss_pred             CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhh
Confidence            799999999999999887 568999999999999888888876

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=97.39  E-value=0.00069  Score=61.55  Aligned_cols=48  Identities=21%  Similarity=0.151  Sum_probs=42.5

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+..+||||||+|.++..+|+.. ++..++|+|+++.+++.+.+.+..
T Consensus       121 ~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~  168 (390)
T PRK14121        121 NQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIEL  168 (390)
T ss_pred             CCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHH
Confidence            456789999999999999999987 568999999999999999888765

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=97.37  E-value=0.00052  Score=57.17  Aligned_cols=51  Identities=25%  Similarity=0.322  Sum_probs=43.1

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHH
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNI  173 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~  173 (299)
                      +..+......++||||||++|+.++.+++.   +.+++.+|.++...+.|++++
T Consensus        37 L~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~   90 (205)
T PF01596_consen   37 LQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENF   90 (205)
T ss_dssp             HHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHH
T ss_pred             HHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHH
Confidence            445555677899999999999999999975   679999999999999998873

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>KOG3420|consensus

Probab=97.36  E-value=0.00036  Score=53.70  Aligned_cols=72  Identities=19%  Similarity=0.282  Sum_probs=56.9

Q ss_pred             ccccccccCCcchHHHHHHHHhccC--CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          41 NIGHNAFMESPSDHCLVLELLSGHL--KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        41 ~~~~~~~~~~p~~~~~~~~~l~~~~--~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .+...|...+|++.+.|+..+....  -.|..++|+|||+|.++..++..  ....+.|+|++++.++..+++..+
T Consensus        20 k~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeE   93 (185)
T KOG3420|consen   20 KLLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEE   93 (185)
T ss_pred             chhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHH
Confidence            3445677778999888888876534  46889999999999998554433  346899999999999999998877

>KOG1269|consensus

Probab=97.36  E-value=0.0003  Score=63.55  Aligned_cols=104  Identities=25%  Similarity=0.264  Sum_probs=82.3

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      ....++..++|+|||-|......+.. ++.+++++.++.....+.......    .......++.+|....+.+++.||.
T Consensus       106 ~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~----~l~~k~~~~~~~~~~~~fedn~fd~  181 (364)
T KOG1269|consen  106 ESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKA----YLDNKCNFVVADFGKMPFEDNTFDG  181 (364)
T ss_pred             hcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHH----HhhhhcceehhhhhcCCCCccccCc
Confidence            34567779999999999999999988 478999999998887776655432    2344555688888888888899999


Q ss_pred             EEecchhhh------HHHHHHHhccCCcEEEEEec
Q psy7837         206 IYISQAIRD------IPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       206 v~~~~~~~~------~~~~~~~~L~~gG~lv~~~~  234 (299)
                      +.+..+..+      +.+++.++++|||..+....
T Consensus       182 v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~  216 (364)
T KOG1269|consen  182 VRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEW  216 (364)
T ss_pred             EEEEeecccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence            988776644      44799999999999998643

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=97.36  E-value=0.00069  Score=57.50  Aligned_cols=58  Identities=24%  Similarity=0.338  Sum_probs=43.9

Q ss_pred             HHHHHHHhccC-CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHL-KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        55 ~~~~~~l~~~~-~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      ..+++.+.... ..+.+|||+|||+|.++..+++.. +..+++++|+++.+++.++..+.
T Consensus        21 ~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~   79 (240)
T TIGR02072        21 KRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS   79 (240)
T ss_pred             HHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC
Confidence            44445444321 345789999999999999998875 45779999999999988877653

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.34  E-value=0.00046  Score=56.74  Aligned_cols=98  Identities=19%  Similarity=0.131  Sum_probs=72.2

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--  197 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--  197 (299)
                      ......+.++.+|||+|||+|.++..+++.   ..+++++|+++.+         .       ..++.++++|..+..  
T Consensus        24 ~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~-------~~~i~~~~~d~~~~~~~   87 (188)
T TIGR00438        24 NQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------P-------IENVDFIRGDFTDEEVL   87 (188)
T ss_pred             HHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------c-------CCCceEEEeeCCChhHH
Confidence            344556688999999999999999988765   2469999999854         1       135778888876531  


Q ss_pred             ------CCCCCeeEEEecchh-----------------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         198 ------PDAAPYDVIYISQAI-----------------RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       198 ------~~~~~fD~v~~~~~~-----------------~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                            ...++||+|+++...                 ..+.+.+.+.|+|||++++.....
T Consensus        88 ~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~  149 (188)
T TIGR00438        88 NKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG  149 (188)
T ss_pred             HHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence                  234679999986531                 234567899999999999976443

>PLN02672 methionine S-methyltransferase

Probab=97.34  E-value=0.00062  Score=69.29  Aligned_cols=76  Identities=18%  Similarity=0.214  Sum_probs=55.9

Q ss_pred             ccccccccccccCCcchHHHHHHHHhccC---CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          37 DIPHNIGHNAFMESPSDHCLVLELLSGHL---KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        37 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~---~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      ...+.+..+..+..|.. ..+++.|....   .++.+|||+|||+|..+..+++... ..+++++|+++.+++.|++++.
T Consensus        86 ~l~~~V~p~VLIPRpeT-E~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~  163 (1082)
T PLN02672         86 KLTMMEIPSIFIPEDWS-FTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLY  163 (1082)
T ss_pred             CCceeeCCCcccCchhH-HHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH
Confidence            34455556666666665 34455553211   1356899999999999999998864 4689999999999999999986


Q ss_pred             H
Q psy7837         114 A  114 (299)
Q Consensus       114 ~  114 (299)
                      .
T Consensus       164 ~  164 (1082)
T PLN02672        164 L  164 (1082)
T ss_pred             H
Confidence            5

>KOG3191|consensus

Probab=97.33  E-value=0.00041  Score=55.54  Aligned_cols=47  Identities=30%  Similarity=0.490  Sum_probs=42.5

Q ss_pred             CCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          68 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        68 g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      -.-++|||||||..+.+|++..++.....+.|+++...+..++....
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~   90 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC   90 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh
Confidence            55689999999999999999999989999999999999988777665

>KOG3201|consensus

Probab=97.30  E-value=0.0002  Score=56.09  Aligned_cols=106  Identities=14%  Similarity=0.240  Sum_probs=73.1

Q ss_pred             CCCCeEEEEcCC-CcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCC--CCCCCCCCee
Q psy7837         130 VYGSKVLDIGSG-SGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGR--RGYPDAAPYD  204 (299)
Q Consensus       130 ~~~~~vLDiG~G-~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~--~~~~~~~~fD  204 (299)
                      ..|.+|||+|.| +|..++.+|..  ...|..+|-++..++..++....|-.  .....+.+...+..  +...+...||
T Consensus        28 ~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~--s~~tsc~vlrw~~~~aqsq~eq~tFD  105 (201)
T KOG3201|consen   28 IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMA--SSLTSCCVLRWLIWGAQSQQEQHTFD  105 (201)
T ss_pred             HhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccc--cccceehhhHHHHhhhHHHHhhCccc
Confidence            347899999999 77777777766  45699999999999999887655311  12233323333322  2223446899


Q ss_pred             EEEecchh------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         205 VIYISQAI------RDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       205 ~v~~~~~~------~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      +|++..++      ..+.+.+..+|+|.|.-++..|-..
T Consensus       106 iIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg  144 (201)
T KOG3201|consen  106 IILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRG  144 (201)
T ss_pred             EEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCccc
Confidence            99998775      3466789999999999777666544

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=97.30  E-value=0.00083  Score=56.86  Aligned_cols=53  Identities=34%  Similarity=0.413  Sum_probs=46.5

Q ss_pred             HHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc-C--CeEEEEeCChHHHHHHHHHH
Q psy7837         121 KRINFYGHLVYGSKVLDIGSGSGYLSALFAYM-G--AKVYAIEHVKNLCKRAMKNI  173 (299)
Q Consensus       121 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~-~--~~v~~~D~~~~~~~~a~~~~  173 (299)
                      ..|.....+.+|.+|+|.|+|||.++..+++. |  .+|+..|+.+...+.|++|+
T Consensus        84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl  139 (256)
T COG2519          84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENL  139 (256)
T ss_pred             HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHH
Confidence            34566678899999999999999999999975 3  57999999999999999984

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=97.29  E-value=0.00074  Score=57.03  Aligned_cols=45  Identities=24%  Similarity=0.291  Sum_probs=39.4

Q ss_pred             CEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          69 DKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        69 ~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .+|||+|||+|.++..+++..+ ..+++++|+++.+++.+++++..
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~   45 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRA   45 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHh
Confidence            3799999999999999988763 46899999999999999988765

>KOG3178|consensus

Probab=97.28  E-value=0.0037  Score=55.39  Aligned_cols=92  Identities=17%  Similarity=0.215  Sum_probs=73.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQ  210 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~  210 (299)
                      .-...+|+|.|.|..+..+...-..+-+++.+...+..++..+.         ..++.+.+|..+..|.   -|+|++--
T Consensus       177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~---------~gV~~v~gdmfq~~P~---~daI~mkW  244 (342)
T KOG3178|consen  177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA---------PGVEHVAGDMFQDTPK---GDAIWMKW  244 (342)
T ss_pred             cCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc---------CCcceecccccccCCC---cCeEEEEe
Confidence            34789999999999999998866669999999888777766532         3588899999877444   46998877


Q ss_pred             hhhhH--------HHHHHHhccCCcEEEEEec
Q psy7837         211 AIRDI--------PWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       211 ~~~~~--------~~~~~~~L~~gG~lv~~~~  234 (299)
                      +++++        .++++..|+|+|.+++...
T Consensus       245 iLhdwtDedcvkiLknC~~sL~~~GkIiv~E~  276 (342)
T KOG3178|consen  245 ILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN  276 (342)
T ss_pred             ecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence            77544        4688999999999999876

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=97.24  E-value=0.0012  Score=58.68  Aligned_cols=48  Identities=13%  Similarity=0.196  Sum_probs=41.7

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ++++.+|||+|||+|.++..+++.. ++.+++++|. +.+++.+++++..
T Consensus       147 ~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~  194 (306)
T TIGR02716       147 LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAE  194 (306)
T ss_pred             CCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHh
Confidence            6788999999999999999999887 4578999997 7888888888765

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=97.24  E-value=0.00089  Score=62.36  Aligned_cols=47  Identities=23%  Similarity=0.202  Sum_probs=40.9

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHH
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~  172 (299)
                      .....++.+|||+|||+|..+..+++..  ..|+++|.++.+++.++++
T Consensus       239 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n  287 (427)
T PRK10901        239 LLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVREN  287 (427)
T ss_pred             HcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence            3355789999999999999999998874  5899999999999999875

>KOG2352|consensus

Probab=97.22  E-value=0.0027  Score=58.51  Aligned_cols=101  Identities=15%  Similarity=0.180  Sum_probs=80.0

Q ss_pred             ccCCCC-eEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         128 HLVYGS-KVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       128 ~~~~~~-~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      .+.+.. +++.+|||.-.+...+..-|.. ++.+|.|+..++.....-..      ......+...|......+.++||+
T Consensus        44 ~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~------~~~~~~~~~~d~~~l~fedESFdi  117 (482)
T KOG2352|consen   44 YLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK------ERPEMQMVEMDMDQLVFEDESFDI  117 (482)
T ss_pred             hhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc------CCcceEEEEecchhccCCCcceeE
Confidence            344555 9999999999999999998875 99999999998887665322      345678889999988888899999


Q ss_pred             EEecchhhhH----------------HHHHHHhccCCcEEEEEec
Q psy7837         206 IYISQAIRDI----------------PWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       206 v~~~~~~~~~----------------~~~~~~~L~~gG~lv~~~~  234 (299)
                      |+.-+.++++                ..+++++|++||+.+....
T Consensus       118 VIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl  162 (482)
T KOG2352|consen  118 VIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL  162 (482)
T ss_pred             EEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence            9987665322                2478999999999777655

>PRK04148 hypothetical protein; Provisional

Probab=97.22  E-value=0.0013  Score=50.51  Aligned_cols=84  Identities=20%  Similarity=0.217  Sum_probs=53.2

Q ss_pred             CCCCEEEEEccCCCH-HHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837          66 KYGDKVLEIGTGSGY-LTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY  144 (299)
Q Consensus        66 ~~g~~vldiG~G~G~-~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~  144 (299)
                      ..+.+++|||||+|. ++..|++. |  ..|+++|+++..++.+++....                  ..+-|+..-+  
T Consensus        15 ~~~~kileIG~GfG~~vA~~L~~~-G--~~ViaIDi~~~aV~~a~~~~~~------------------~v~dDlf~p~--   71 (134)
T PRK04148         15 GKNKKIVELGIGFYFKVAKKLKES-G--FDVIVIDINEKAVEKAKKLGLN------------------AFVDDLFNPN--   71 (134)
T ss_pred             ccCCEEEEEEecCCHHHHHHHHHC-C--CEEEEEECCHHHHHHHHHhCCe------------------EEECcCCCCC--
Confidence            356899999999996 77777754 3  3799999999988877655322                  2233333221  


Q ss_pred             HHHHHHHcCCe-EEEEeCChHHHHHHHHHHHh
Q psy7837         145 LSALFAYMGAK-VYAIEHVKNLCKRAMKNIRR  175 (299)
Q Consensus       145 ~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~  175 (299)
                        ..+. .++. ++++-.-+++.....+.+..
T Consensus        72 --~~~y-~~a~liysirpp~el~~~~~~la~~  100 (134)
T PRK04148         72 --LEIY-KNAKLIYSIRPPRDLQPFILELAKK  100 (134)
T ss_pred             --HHHH-hcCCEEEEeCCCHHHHHHHHHHHHH
Confidence              1112 2444 78887766666655555444

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=97.22  E-value=0.0013  Score=59.71  Aligned_cols=61  Identities=18%  Similarity=0.195  Sum_probs=48.1

Q ss_pred             cchHHHHHHHHhccCC-CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          51 PSDHCLVLELLSGHLK-YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        51 p~~~~~~~~~l~~~~~-~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.....+++.+.+.+. .+.+|||++||+|.++..+++...   +++++|+++.+++.+++++..
T Consensus       180 ~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~  241 (353)
T TIGR02143       180 AAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAA  241 (353)
T ss_pred             HHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHH
Confidence            4445566666555443 235799999999999999998763   799999999999999998866

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PHA03411 putative methyltransferase; Provisional

Probab=97.22  E-value=0.0013  Score=56.76  Aligned_cols=64  Identities=19%  Similarity=0.234  Sum_probs=46.6

Q ss_pred             cccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Q psy7837          44 HNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV  112 (299)
Q Consensus        44 ~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l  112 (299)
                      .|++...+.+....+  +  ..+.+.+|||+|||+|.++..++...+ ..+++++|+++.+++.+++++
T Consensus        45 ~G~FfTP~~i~~~f~--~--~~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~  108 (279)
T PHA03411         45 SGAFFTPEGLAWDFT--I--DAHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL  108 (279)
T ss_pred             ceeEcCCHHHHHHHH--h--ccccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC
Confidence            466655555543321  1  245567999999999999988877643 258999999999999888754

>PTZ00146 fibrillarin; Provisional

Probab=97.22  E-value=0.0008  Score=58.71  Aligned_cols=43  Identities=28%  Similarity=0.324  Sum_probs=36.6

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcC---CeEEEEeCChHHHHHHH
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMG---AKVYAIEHVKNLCKRAM  170 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~---~~v~~~D~~~~~~~~a~  170 (299)
                      .+.++.+|||+|||+|+++..++...   ..|+++|+++.+.+...
T Consensus       129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl  174 (293)
T PTZ00146        129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLT  174 (293)
T ss_pred             ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHH
Confidence            46789999999999999999999873   57999999988766543

>PLN02476 O-methyltransferase

Probab=97.20  E-value=0.0011  Score=57.62  Aligned_cols=52  Identities=17%  Similarity=0.221  Sum_probs=44.7

Q ss_pred             HHhhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHH
Q psy7837         122 RINFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNI  173 (299)
Q Consensus       122 ~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~  173 (299)
                      .+..+....+.++|||+||++|+.++.++..   +..++++|.+++..+.|++++
T Consensus       109 lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~  163 (278)
T PLN02476        109 LLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYY  163 (278)
T ss_pred             HHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH
Confidence            4556667778999999999999999999874   457999999999999999873

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=97.20  E-value=0.0011  Score=55.44  Aligned_cols=52  Identities=21%  Similarity=0.363  Sum_probs=44.8

Q ss_pred             HHhhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHH
Q psy7837         122 RINFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNI  173 (299)
Q Consensus       122 ~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~  173 (299)
                      .+..+....+.++|||||++.|+.++.++..   ..+++.+|+++++.+.|++|+
T Consensus        50 ~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~  104 (219)
T COG4122          50 LLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENL  104 (219)
T ss_pred             HHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHH
Confidence            4555666678999999999999999999865   468999999999999999983

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=97.19  E-value=0.0011  Score=60.51  Aligned_cols=62  Identities=11%  Similarity=0.064  Sum_probs=48.2

Q ss_pred             CcchHHHHHHHHhccC--CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          50 SPSDHCLVLELLSGHL--KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        50 ~p~~~~~~~~~l~~~~--~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .+...+.+++.+...+  .++.+|||++||+|.++..++...   .+++++|+++..++.++++...
T Consensus       214 n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~  277 (374)
T TIGR02085       214 NPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQM  277 (374)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHH
Confidence            4444555555544332  467899999999999999998543   4799999999999999999876

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR00478 tly hemolysin TlyA family protein

Probab=97.18  E-value=0.00081  Score=56.91  Aligned_cols=40  Identities=23%  Similarity=0.276  Sum_probs=34.4

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEA  107 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~  107 (299)
                      ..|..|||+|||+|.+|..+++. | ..+++++|+++.++..
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~  113 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAE  113 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHH
Confidence            47889999999999999999986 2 3689999999977654

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=97.18  E-value=0.0013  Score=55.51  Aligned_cols=42  Identities=19%  Similarity=0.066  Sum_probs=36.3

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAAR  109 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~  109 (299)
                      +.++.+|||+|||.|..+.+|++..   -.|+|+|+++..++.+.
T Consensus        35 ~~~~~rvL~~gCG~G~da~~LA~~G---~~V~avD~s~~Ai~~~~   76 (218)
T PRK13255         35 LPAGSRVLVPLCGKSLDMLWLAEQG---HEVLGVELSELAVEQFF   76 (218)
T ss_pred             CCCCCeEEEeCCCChHhHHHHHhCC---CeEEEEccCHHHHHHHH
Confidence            4677899999999999999999753   36999999999999764

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=97.18  E-value=0.00082  Score=56.28  Aligned_cols=44  Identities=18%  Similarity=0.086  Sum_probs=33.4

Q ss_pred             HHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcC---CeEEEEeC
Q psy7837         118 TYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMG---AKVYAIEH  161 (299)
Q Consensus       118 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~---~~v~~~D~  161 (299)
                      ++.+.......+.++.+|||+|||+|.++..+++..   ..|+++|+
T Consensus        38 kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi   84 (209)
T PRK11188         38 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDI   84 (209)
T ss_pred             hhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEec
Confidence            333334444446788999999999999999988763   47999985

>KOG1709|consensus

Probab=97.17  E-value=0.0069  Score=49.96  Aligned_cols=101  Identities=23%  Similarity=0.276  Sum_probs=76.7

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCCCCeeEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDAAPYDVI  206 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v  206 (299)
                      .+|.+||.+|-|-|...-.+.+... +-+-||.+|..++..+...-.      ...|+.+..+-..+..  .+++.||-|
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~------ek~nViil~g~WeDvl~~L~d~~FDGI  173 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWR------EKENVIILEGRWEDVLNTLPDKHFDGI  173 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccc------cccceEEEecchHhhhccccccCccee
Confidence            6799999999999999988888764 588899999999988886433      2357777766554322  234679999


Q ss_pred             Eecchh------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         207 YISQAI------RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       207 ~~~~~~------~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +-+.-.      .++.+.+.++|||+|.+-......
T Consensus       174 ~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~  209 (271)
T KOG1709|consen  174 YYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLG  209 (271)
T ss_pred             EeechhhHHHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence            987652      345578999999999988876543

>KOG1661|consensus

Probab=97.15  E-value=0.0008  Score=55.15  Aligned_cols=48  Identities=50%  Similarity=0.814  Sum_probs=42.1

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc----CCeEEEEeCChHHHHHHHHHHHh
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM----GAKVYAIEHVKNLCKRAMKNIRR  175 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~----~~~v~~~D~~~~~~~~a~~~~~~  175 (299)
                      ++.||.+.||+|+|||+++.+++++    |..++|+|.-+++++..++|+..
T Consensus        79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k  130 (237)
T KOG1661|consen   79 HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDK  130 (237)
T ss_pred             hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHh
Confidence            3567999999999999999999977    33459999999999999999876

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=97.14  E-value=0.0012  Score=57.35  Aligned_cols=63  Identities=22%  Similarity=0.171  Sum_probs=48.5

Q ss_pred             CceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHH
Q psy7837          92 SGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKR  168 (299)
Q Consensus        92 ~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~  168 (299)
                      .|.++-.|.+..+...+                  ....++.+|||+|||+|..+..++..   ...|+++|+++.+++.
T Consensus        50 ~G~~~~qd~~s~~~~~~------------------l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~  111 (264)
T TIGR00446        50 SGLYYIQEASSMIPPLA------------------LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKV  111 (264)
T ss_pred             CCeEEEECHHHHHHHHH------------------hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHH
Confidence            46677777655544321                  23457899999999999999988775   3579999999999999


Q ss_pred             HHHH
Q psy7837         169 AMKN  172 (299)
Q Consensus       169 a~~~  172 (299)
                      ++++
T Consensus       112 ~~~n  115 (264)
T TIGR00446       112 LIAN  115 (264)
T ss_pred             HHHH
Confidence            9876

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.13  E-value=0.0011  Score=57.66  Aligned_cols=64  Identities=30%  Similarity=0.396  Sum_probs=54.2

Q ss_pred             ccc-cCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          45 NAF-MESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        45 ~~~-~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      ||+ +.++.+...+++.+.  +.+++.|+|+|+|.|.+|..|.+..   .+++++|+++.+.+..++.+.
T Consensus         9 gQnFL~~~~~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~   73 (262)
T PF00398_consen    9 GQNFLVDPNIADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA   73 (262)
T ss_dssp             TSSEEEHHHHHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT
T ss_pred             CcCeeCCHHHHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh
Confidence            443 357788888888887  7799999999999999999999887   479999999999888877654

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=97.11  E-value=0.0013  Score=61.55  Aligned_cols=47  Identities=19%  Similarity=0.230  Sum_probs=40.2

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~  172 (299)
                      .....++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.++++
T Consensus       245 ~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~  294 (445)
T PRK14904        245 LLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSH  294 (445)
T ss_pred             hcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHH
Confidence            335567899999999999999888764   45899999999999999876

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=97.11  E-value=0.0015  Score=60.85  Aligned_cols=106  Identities=21%  Similarity=0.195  Sum_probs=80.7

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCC-CeEEEEcCCCCCCC--CCC
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAE-NFEFVCADGRRGYP--DAA  201 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~--~~~  201 (299)
                      ....++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.+++++++.     +.. .+.+..+|......  ..+
T Consensus       234 L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~-----g~~~~v~~~~~d~~~~~~~~~~~  308 (426)
T TIGR00563       234 LAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRL-----GLTIKAETKDGDGRGPSQWAENE  308 (426)
T ss_pred             hCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHc-----CCCeEEEEecccccccccccccc
Confidence            34567899999999999999998876  368999999999999999999883     332 33446666554322  346


Q ss_pred             CeeEEEecchhh----------------------------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837         202 PYDVIYISQAIR----------------------------DIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       202 ~fD~v~~~~~~~----------------------------~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      +||.|+++++..                            .+.+++.++|||||+|++++-+..
T Consensus       309 ~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~  372 (426)
T TIGR00563       309 QFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL  372 (426)
T ss_pred             ccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            799999876421                            244578899999999999876553

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=97.11  E-value=0.0027  Score=51.83  Aligned_cols=66  Identities=26%  Similarity=0.233  Sum_probs=48.1

Q ss_pred             ccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCc--------eEEEEeCCHHHHHHHHHHHHH
Q psy7837          47 FMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISG--------KVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        47 ~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g--------~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ....|.+.+.++....  +++|+.|||--||+|.+....+.....--        .++|+|+++.+++.++.++..
T Consensus        10 a~L~~~lA~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~   83 (179)
T PF01170_consen   10 APLRPTLAAALLNLAG--WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKA   83 (179)
T ss_dssp             TSS-HHHHHHHHHHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHh
Confidence            3456777777776555  89999999999999999887766554322        388999999999999999987

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.10  E-value=0.01  Score=51.12  Aligned_cols=109  Identities=17%  Similarity=0.157  Sum_probs=63.4

Q ss_pred             hhhcccCCCCeEEEEcCC--CcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC--
Q psy7837         124 NFYGHLVYGSKVLDIGSG--SGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG--  196 (299)
Q Consensus       124 ~~~~~~~~~~~vLDiG~G--~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--  196 (299)
                      ++++.-..=...||||||  +-....++++.   .++|+-+|.+|..+..++..+..+     ......++.+|+.+.  
T Consensus        61 r~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~-----~~g~t~~v~aD~r~p~~  135 (267)
T PF04672_consen   61 RYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN-----PRGRTAYVQADLRDPEA  135 (267)
T ss_dssp             HHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT------TTSEEEEEE--TT-HHH
T ss_pred             HHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC-----CCccEEEEeCCCCCHHH
Confidence            333333344689999999  44455666654   789999999999999999988662     223489999998841  


Q ss_pred             ---------CCCCCCeeEEEecchhhhHH---------HHHHHhccCCcEEEEEecCCC
Q psy7837         197 ---------YPDAAPYDVIYISQAIRDIP---------WHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       197 ---------~~~~~~fD~v~~~~~~~~~~---------~~~~~~L~~gG~lv~~~~~~~  237 (299)
                               ...-..-=.+++..++++++         ..+.+.|.||..|+++.....
T Consensus       136 iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d  194 (267)
T PF04672_consen  136 ILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD  194 (267)
T ss_dssp             HHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred             HhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence                     11111122455666665544         578999999999999987654

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=97.09  E-value=0.0016  Score=60.70  Aligned_cols=45  Identities=22%  Similarity=0.268  Sum_probs=39.8

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~  172 (299)
                      ...++.+|||+|||+|..+..++..   +.+|+++|+++.+++.++++
T Consensus       234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n  281 (431)
T PRK14903        234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKH  281 (431)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHH
Confidence            4567899999999999999988875   56899999999999999876

>TIGR00095 RNA methyltransferase, RsmD family

Probab=97.08  E-value=0.0033  Score=51.79  Aligned_cols=56  Identities=16%  Similarity=0.150  Sum_probs=45.1

Q ss_pred             HHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          56 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        56 ~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .++..+.. ...|.+|||++||+|.++..++....  .+++++|.++..++.+++++..
T Consensus        39 a~f~~l~~-~~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~   94 (189)
T TIGR00095        39 LFFNILRP-EIQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLAL   94 (189)
T ss_pred             HHHHHHHH-hcCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHH
Confidence            34444432 34689999999999999999888753  3799999999999999999876

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=97.08  E-value=0.0019  Score=58.78  Aligned_cols=62  Identities=21%  Similarity=0.177  Sum_probs=49.2

Q ss_pred             CcchHHHHHHHHhccCCC-CCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          50 SPSDHCLVLELLSGHLKY-GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        50 ~p~~~~~~~~~l~~~~~~-g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .+...+.+++.+.+.+.+ +.+|||++||+|.++..+++...   +++++|+++.+++.+++++..
T Consensus       188 N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~  250 (362)
T PRK05031        188 NAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAA  250 (362)
T ss_pred             CHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHH
Confidence            344456677666654543 35799999999999999998753   799999999999999998866

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=97.06  E-value=0.0017  Score=60.87  Aligned_cols=45  Identities=24%  Similarity=0.192  Sum_probs=39.5

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~  172 (299)
                      ...++.+|||+|||+|..+..+++.   ...|+++|+++.+++.+++|
T Consensus       247 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n  294 (444)
T PRK14902        247 DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEEN  294 (444)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence            4567899999999999999998875   46899999999999998875

>PLN03075 nicotianamine synthase; Provisional

Probab=96.99  E-value=0.003  Score=55.35  Aligned_cols=42  Identities=19%  Similarity=0.101  Sum_probs=33.7

Q ss_pred             CCCeEEEEcCCCcHHHH-HHH-Hc--CCeEEEEeCChHHHHHHHHH
Q psy7837         131 YGSKVLDIGSGSGYLSA-LFA-YM--GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~-~la-~~--~~~v~~~D~~~~~~~~a~~~  172 (299)
                      ++++|+|||||.|.++. .++ ..  +.+++++|+++.+++.|++.
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~  168 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRL  168 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH
Confidence            78999999999775543 343 33  56799999999999999876

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=96.98  E-value=0.0037  Score=48.67  Aligned_cols=44  Identities=25%  Similarity=0.435  Sum_probs=38.8

Q ss_pred             EEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          70 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        70 ~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .++|+|||.|+++..+++.. +.++++++|.++.+.+..++++..
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~   44 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKL   44 (143)
T ss_pred             CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHH
Confidence            37999999999999998764 456999999999999999988875

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.95  E-value=0.0028  Score=55.30  Aligned_cols=54  Identities=24%  Similarity=0.226  Sum_probs=41.4

Q ss_pred             CcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHH
Q psy7837          50 SPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEA  107 (299)
Q Consensus        50 ~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~  107 (299)
                      +-..+..+...+.  -..|.+|||||||.||.+..++..-.  ..|+|+|.+....-.
T Consensus       100 Sd~KW~rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~Q  153 (315)
T PF08003_consen  100 SDWKWDRLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQ  153 (315)
T ss_pred             ccchHHHHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHH
Confidence            3445666666664  35789999999999999988877643  479999999887654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>KOG1227|consensus

Probab=96.94  E-value=0.00071  Score=58.34  Aligned_cols=122  Identities=17%  Similarity=0.199  Sum_probs=82.6

Q ss_pred             CceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHH-HHHHcCCe-EEEEeCChHHHHHH
Q psy7837          92 SGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSA-LFAYMGAK-VYAIEHVKNLCKRA  169 (299)
Q Consensus        92 ~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~-~la~~~~~-v~~~D~~~~~~~~a  169 (299)
                      +|..+.+|.-..|.++....-+         .+...-...+..|+|+.+|-||+++ .+...|+. |+++|.+|..++..
T Consensus       164 NGI~~~~d~t~~MFS~GN~~EK---------~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaL  234 (351)
T KOG1227|consen  164 NGITQIWDPTKTMFSRGNIKEK---------KRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEAL  234 (351)
T ss_pred             cCeEEEechhhhhhhcCcHHHH---------HHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHH
Confidence            5778888877777654332111         1222223456899999999999999 66777765 99999999999999


Q ss_pred             HHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhh--hHHHHHHHhccCCc
Q psy7837         170 MKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIR--DIPWHIVDQLKLGG  227 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~--~~~~~~~~~L~~gG  227 (299)
                      +++++.|    ....+...+.+|-...-+ ....|.|.......  .--..+..+|+|.|
T Consensus       235 rR~~~~N----~V~~r~~i~~gd~R~~~~-~~~AdrVnLGLlPSse~~W~~A~k~Lk~eg  289 (351)
T KOG1227|consen  235 RRNAEAN----NVMDRCRITEGDNRNPKP-RLRADRVNLGLLPSSEQGWPTAIKALKPEG  289 (351)
T ss_pred             HHHHHhc----chHHHHHhhhccccccCc-cccchheeeccccccccchHHHHHHhhhcC
Confidence            9999885    345566666666554333 36788888754331  11234666777744

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=96.93  E-value=0.0025  Score=59.54  Aligned_cols=46  Identities=17%  Similarity=0.224  Sum_probs=40.1

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~  172 (299)
                      ....++.+|||+|||+|..+..+++.   ...|+++|+++.+++.++++
T Consensus       248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n  296 (434)
T PRK14901        248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQEN  296 (434)
T ss_pred             hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHH
Confidence            34567899999999999999998876   35799999999999999876

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=96.92  E-value=0.0027  Score=56.47  Aligned_cols=47  Identities=23%  Similarity=0.311  Sum_probs=40.5

Q ss_pred             CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          67 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        67 ~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .+.++||||||+|.....++.... ..+++++|+++..++.|++++..
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~  160 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISA  160 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHh
Confidence            467999999999988888876543 46899999999999999999987

>PHA01634 hypothetical protein

Probab=96.90  E-value=0.0062  Score=45.93  Aligned_cols=46  Identities=24%  Similarity=0.275  Sum_probs=42.5

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHHHHHh
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRR  175 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~  175 (299)
                      ..+++|+|||++.|..++.++-+|++ |+++|.++...+..+++++.
T Consensus        27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~   73 (156)
T PHA01634         27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAY   73 (156)
T ss_pred             ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhh
Confidence            45899999999999999999999986 99999999999999998876

>KOG1501|consensus

Probab=96.87  E-value=0.0023  Score=58.03  Aligned_cols=57  Identities=30%  Similarity=0.437  Sum_probs=49.7

Q ss_pred             eEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCC
Q psy7837         134 KVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGR  194 (299)
Q Consensus       134 ~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  194 (299)
                      .|||||+|||.++...++.|++ |+++|....|.+.|++....+    +..+++.++.--..
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kn----g~SdkI~vInkrSt  126 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKN----GMSDKINVINKRST  126 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcC----CCccceeeeccccc
Confidence            6999999999999999999876 999999999999999999886    67788888765433

>KOG1499|consensus

Probab=96.85  E-value=0.0023  Score=56.60  Aligned_cols=48  Identities=35%  Similarity=0.480  Sum_probs=40.4

Q ss_pred             cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ++-.+..|||+|||+|.++++.++...  .+|+++|.+... +.+++.+..
T Consensus        57 ~lf~dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~ia-~~a~~iv~~  104 (346)
T KOG1499|consen   57 HLFKDKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSIA-DFARKIVKD  104 (346)
T ss_pred             hhcCCCEEEEcCCCccHHHHHHHHhCc--ceEEEEechHHH-HHHHHHHHh
Confidence            356889999999999999999998774  499999998776 777777654

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=96.83  E-value=0.0045  Score=52.58  Aligned_cols=47  Identities=28%  Similarity=0.431  Sum_probs=40.3

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..++.+|||+|||+|.++..+++..   ..++++|+++.+++.+++++..
T Consensus        46 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~   92 (233)
T PRK05134         46 GLFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALE   92 (233)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHH
Confidence            4578899999999999999888753   4699999999999998887754

>KOG3987|consensus

Probab=96.80  E-value=0.0003  Score=57.43  Aligned_cols=90  Identities=21%  Similarity=0.232  Sum_probs=65.7

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS  209 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  209 (299)
                      ..+.++||+|+|.|-.+..++..-..|++.|.|..|....+++            +..++..  ......+-+||+|.|.
T Consensus       111 ~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk------------~ynVl~~--~ew~~t~~k~dli~cl  176 (288)
T KOG3987|consen  111 QEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK------------NYNVLTE--IEWLQTDVKLDLILCL  176 (288)
T ss_pred             CCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc------------CCceeee--hhhhhcCceeehHHHH
Confidence            3457999999999999999998888899999999999888764            2222211  1111122459999998


Q ss_pred             chhh------hHHHHHHHhccC-CcEEEEEe
Q psy7837         210 QAIR------DIPWHIVDQLKL-GGRMLFIK  233 (299)
Q Consensus       210 ~~~~------~~~~~~~~~L~~-gG~lv~~~  233 (299)
                      +.+.      .+.+.++.+|+| .|+.++..
T Consensus       177 NlLDRc~~p~kLL~Di~~vl~psngrvivaL  207 (288)
T KOG3987|consen  177 NLLDRCFDPFKLLEDIHLVLAPSNGRVIVAL  207 (288)
T ss_pred             HHHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence            8775      355788999999 88777653

>PLN02366 spermidine synthase

Probab=96.79  E-value=0.027  Score=50.00  Aligned_cols=86  Identities=13%  Similarity=0.079  Sum_probs=57.1

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY  144 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~  144 (299)
                      .....+||++|||.|.....+++. ....++..+|+++.+++.+++.+...           .....+.+ +.+=+|.|.
T Consensus        89 ~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~-----------~~~~~dpR-v~vi~~Da~  155 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDL-----------AVGFDDPR-VNLHIGDGV  155 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhh-----------ccccCCCc-eEEEEChHH
Confidence            356789999999999999988865 23468999999999999999987651           00111222 244456654


Q ss_pred             HHHHHH-HcCCeEEEEeCCh
Q psy7837         145 LSALFA-YMGAKVYAIEHVK  163 (299)
Q Consensus       145 ~~~~la-~~~~~v~~~D~~~  163 (299)
                      .-+.-. ....+++.+|.+.
T Consensus       156 ~~l~~~~~~~yDvIi~D~~d  175 (308)
T PLN02366        156 EFLKNAPEGTYDAIIVDSSD  175 (308)
T ss_pred             HHHhhccCCCCCEEEEcCCC
Confidence            433211 2235677888754

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=96.77  E-value=0.0044  Score=51.35  Aligned_cols=124  Identities=15%  Similarity=0.034  Sum_probs=79.3

Q ss_pred             CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcC-CeEE
Q psy7837          79 GYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMG-AKVY  157 (299)
Q Consensus        79 G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~-~~v~  157 (299)
                      |--+...|...|. ..--|-|.+..++++.++.....           ......-++|||||=+......  ..+ .+|+
T Consensus        11 Gl~~YQ~AS~~Gq-~~~RGGdSSK~lv~wL~~~~~~~-----------~~~~~~lrlLEVGals~~N~~s--~~~~fdvt   76 (219)
T PF11968_consen   11 GLEAYQRASKQGQ-SKDRGGDSSKWLVEWLKELGVRP-----------KNGRPKLRLLEVGALSTDNACS--TSGWFDVT   76 (219)
T ss_pred             CHHHHHHHHHhcC-CCCCCCchhHHHHHHhhhhcccc-----------ccccccceEEeecccCCCCccc--ccCceeeE
Confidence            5556666766664 33345566666666555544331           1112236999999986654443  233 3499


Q ss_pred             EEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC---CCCCeeEEEecchhhh---------HHHHHHHhccC
Q psy7837         158 AIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP---DAAPYDVIYISQAIRD---------IPWHIVDQLKL  225 (299)
Q Consensus       158 ~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~v~~~~~~~~---------~~~~~~~~L~~  225 (299)
                      .||+++                    ..-.+.+.|+...+.   +.+.||+|.+..++.-         +..++.+.|++
T Consensus        77 ~IDLns--------------------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~  136 (219)
T PF11968_consen   77 RIDLNS--------------------QHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKP  136 (219)
T ss_pred             EeecCC--------------------CCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence            999865                    234456777775332   3478999999888753         44688999999


Q ss_pred             CcE-----EEEEecCC
Q psy7837         226 GGR-----MLFIKGHE  236 (299)
Q Consensus       226 gG~-----lv~~~~~~  236 (299)
                      +|.     |++..|.+
T Consensus       137 ~g~~~~~~LFlVlP~~  152 (219)
T PF11968_consen  137 PGLSLFPSLFLVLPLP  152 (219)
T ss_pred             CCccCcceEEEEeCch
Confidence            999     88877643

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=96.77  E-value=0.0045  Score=54.44  Aligned_cols=76  Identities=14%  Similarity=0.081  Sum_probs=60.5

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcC---CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC---CCC-CC
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMG---AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG---YPD-AA  201 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~-~~  201 (299)
                      ..++..++|.+||.|..+..+++..   .+|+|+|.++.+++.+++++..       ..++.++++|....   ... ..
T Consensus        17 ~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-------~~ri~~i~~~f~~l~~~l~~~~~   89 (296)
T PRK00050         17 IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-------FGRFTLVHGNFSNLKEVLAEGLG   89 (296)
T ss_pred             CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-------CCcEEEEeCCHHHHHHHHHcCCC
Confidence            3578899999999999999998873   6899999999999999987632       35899999988742   111 12


Q ss_pred             CeeEEEecch
Q psy7837         202 PYDVIYISQA  211 (299)
Q Consensus       202 ~fD~v~~~~~  211 (299)
                      ++|.|+++..
T Consensus        90 ~vDgIl~DLG   99 (296)
T PRK00050         90 KVDGILLDLG   99 (296)
T ss_pred             ccCEEEECCC
Confidence            6999988764

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.77  E-value=0.031  Score=46.22  Aligned_cols=62  Identities=24%  Similarity=0.262  Sum_probs=43.8

Q ss_pred             hHHHHHHHHhccCC--CCCEEEEEccCCCHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHH
Q psy7837          53 DHCLVLELLSGHLK--YGDKVLEIGTGSGYLTTLFGAMVGIS-GKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        53 ~~~~~~~~l~~~~~--~g~~vldiG~G~G~~~~~la~~~~~~-g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +..-++++....+.  ..-++.|-+||+||+-..+.-.-+.. ..+++.|+++..++.|++++.-
T Consensus        35 LAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~L   99 (246)
T PF11599_consen   35 LASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSL   99 (246)
T ss_dssp             HHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhh
Confidence            34444454443332  23367899999999999988766654 6799999999999999999864

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=96.77  E-value=0.0034  Score=52.90  Aligned_cols=45  Identities=29%  Similarity=0.495  Sum_probs=38.7

Q ss_pred             CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          67 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        67 ~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .+.+|||+|||+|.++..+++..   .+++++|.++.+++.+++++..
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~   89 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKK   89 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHH
Confidence            47899999999999999888753   3599999999999999887765

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>KOG1540|consensus

Probab=96.75  E-value=0.0039  Score=52.79  Aligned_cols=25  Identities=28%  Similarity=0.313  Sum_probs=20.8

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM  152 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~  152 (299)
                      ....+.++||++||||-++.-+.+.
T Consensus        97 ~p~~~m~~lDvaGGTGDiaFril~~  121 (296)
T KOG1540|consen   97 GPGKGMKVLDVAGGTGDIAFRILRH  121 (296)
T ss_pred             CCCCCCeEEEecCCcchhHHHHHHh
Confidence            3456789999999999999888765

>PRK00811 spermidine synthase; Provisional

Probab=96.73  E-value=0.0059  Score=53.62  Aligned_cols=48  Identities=23%  Similarity=0.193  Sum_probs=40.7

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ....+||++|||.|..+..+.+..+ ..++..+|+++.+++.+++.+..
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~~vv~~a~~~~~~  122 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDERVVEVCRKYLPE  122 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCHHHHHHHHHHhHH
Confidence            4668999999999999998876422 35899999999999999998765

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=96.73  E-value=0.005  Score=56.59  Aligned_cols=48  Identities=21%  Similarity=0.196  Sum_probs=40.3

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.+|.+|||+|||+|.++..++.  +...+++++|+++.+++.+++++..
T Consensus       218 ~~~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~  265 (396)
T PRK15128        218 YVENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVEL  265 (396)
T ss_pred             hcCCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHH
Confidence            45689999999999999876553  2345899999999999999999876

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.72  E-value=0.011  Score=50.11  Aligned_cols=99  Identities=18%  Similarity=0.175  Sum_probs=66.2

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI  206 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  206 (299)
                      ..+..+|+|||||.-.+++.+...  +..++++|++..+++.....+..      ...+..+...|.....+. ...|+.
T Consensus       103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~------l~~~~~~~v~Dl~~~~~~-~~~Dla  175 (251)
T PF07091_consen  103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAV------LGVPHDARVRDLLSDPPK-EPADLA  175 (251)
T ss_dssp             S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHH------TT-CEEEEEE-TTTSHTT-SEESEE
T ss_pred             CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHh------hCCCcceeEeeeeccCCC-CCcchh
Confidence            345789999999999998877655  57899999999999999988766      346778888888865443 568999


Q ss_pred             EecchhhhHHH-------HHHHhccCCcEEEEEecC
Q psy7837         207 YISQAIRDIPW-------HIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       207 ~~~~~~~~~~~-------~~~~~L~~gG~lv~~~~~  235 (299)
                      ++.=.++-+.+       ++.+.++ .=.++++++.
T Consensus       176 LllK~lp~le~q~~g~g~~ll~~~~-~~~~vVSfPt  210 (251)
T PF07091_consen  176 LLLKTLPCLERQRRGAGLELLDALR-SPHVVVSFPT  210 (251)
T ss_dssp             EEET-HHHHHHHSTTHHHHHHHHSC-ESEEEEEEES
T ss_pred             hHHHHHHHHHHHhcchHHHHHHHhC-CCeEEEeccc
Confidence            98776655443       2333332 2355666654

>KOG0024|consensus

Probab=96.72  E-value=0.053  Score=47.72  Aligned_cols=112  Identities=21%  Similarity=0.264  Sum_probs=73.9

Q ss_pred             hccCCCCCEEEEEccCC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcC
Q psy7837          62 SGHLKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGS  140 (299)
Q Consensus        62 ~~~~~~g~~vldiG~G~-G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~  140 (299)
                      ...+++|.+||-+|+|+ |-.+...++.+|. .+|+.+|..+.-++.|++ +.                           
T Consensus       164 ~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA-~~VVi~d~~~~Rle~Ak~-~G---------------------------  214 (354)
T KOG0024|consen  164 RAGVKKGSKVLVLGAGPIGLLTGLVAKAMGA-SDVVITDLVANRLELAKK-FG---------------------------  214 (354)
T ss_pred             hcCcccCCeEEEECCcHHHHHHHHHHHHcCC-CcEEEeecCHHHHHHHHH-hC---------------------------
Confidence            34589999999999998 8888888888874 678888888887777776 21                           


Q ss_pred             CCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHHHHH
Q psy7837         141 GSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIV  220 (299)
Q Consensus       141 G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~  220 (299)
                                   ++++--.......+..++..+.                     ......+|+.|--..++...+...
T Consensus       215 -------------a~~~~~~~~~~~~~~~~~~v~~---------------------~~g~~~~d~~~dCsG~~~~~~aai  260 (354)
T KOG0024|consen  215 -------------ATVTDPSSHKSSPQELAELVEK---------------------ALGKKQPDVTFDCSGAEVTIRAAI  260 (354)
T ss_pred             -------------CeEEeeccccccHHHHHHHHHh---------------------hccccCCCeEEEccCchHHHHHHH
Confidence                         2222111111122222222222                     111133888888777888888889


Q ss_pred             HhccCCcEEEEEecCC
Q psy7837         221 DQLKLGGRMLFIKGHE  236 (299)
Q Consensus       221 ~~L~~gG~lv~~~~~~  236 (299)
                      ..++.||.+++.....
T Consensus       261 ~a~r~gGt~vlvg~g~  276 (354)
T KOG0024|consen  261 KATRSGGTVVLVGMGA  276 (354)
T ss_pred             HHhccCCEEEEeccCC
Confidence            9999999977765443

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=96.69  E-value=0.0091  Score=46.25  Aligned_cols=78  Identities=15%  Similarity=0.228  Sum_probs=53.4

Q ss_pred             eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC--CCCCCCCeeEEEecchh---------------hhHHH
Q psy7837         155 KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR--GYPDAAPYDVIYISQAI---------------RDIPW  217 (299)
Q Consensus       155 ~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~v~~~~~~---------------~~~~~  217 (299)
                      +|+++|+.+++++..+++++..    ....+++++..+=..  ...+.+++|+++.|...               -...+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~----~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~   76 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEA----GLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALE   76 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHT----T-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhc----CCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence            5899999999999999999884    344579988876442  12222579999988753               12336


Q ss_pred             HHHHhccCCcEEEEEecCC
Q psy7837         218 HIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       218 ~~~~~L~~gG~lv~~~~~~  236 (299)
                      .+.++|++||++++.+.+.
T Consensus        77 ~al~lL~~gG~i~iv~Y~G   95 (140)
T PF06962_consen   77 AALELLKPGGIITIVVYPG   95 (140)
T ss_dssp             HHHHHEEEEEEEEEEE--S
T ss_pred             HHHHhhccCCEEEEEEeCC
Confidence            8899999999999987653

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PRK11524 putative methyltransferase; Provisional

Probab=96.68  E-value=0.0071  Score=53.14  Aligned_cols=46  Identities=26%  Similarity=0.178  Sum_probs=43.7

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHh
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRR  175 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~  175 (299)
                      .+|..|||..+|||+.+.+..++|.+.+|+|++++.++.++++++.
T Consensus       207 ~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        207 NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence            6899999999999999999999999999999999999999999764

>KOG4058|consensus

Probab=96.67  E-value=0.021  Score=44.28  Aligned_cols=100  Identities=20%  Similarity=0.158  Sum_probs=71.9

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      .+..+.+|+|+|.|...+..++.|. ..+++|+++-++...+-..-+.    +......|..-|.......  .|..+++
T Consensus        71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~----g~~k~trf~RkdlwK~dl~--dy~~vvi  144 (199)
T KOG4058|consen   71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRA----GCAKSTRFRRKDLWKVDLR--DYRNVVI  144 (199)
T ss_pred             CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHH----hcccchhhhhhhhhhcccc--ccceEEE
Confidence            5667999999999999999999995 5999999999999888776553    4567778887777654332  2444443


Q ss_pred             cch---hhhHHHHHHHhccCCcEEEEEecC
Q psy7837         209 SQA---IRDIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       209 ~~~---~~~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ...   +..+.+.+..-+..+..++..-.+
T Consensus       145 Fgaes~m~dLe~KL~~E~p~nt~vvacRFP  174 (199)
T KOG4058|consen  145 FGAESVMPDLEDKLRTELPANTRVVACRFP  174 (199)
T ss_pred             eehHHHHhhhHHHHHhhCcCCCeEEEEecC
Confidence            333   334456777777777777765433

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.64  E-value=0.017  Score=53.67  Aligned_cols=63  Identities=29%  Similarity=0.317  Sum_probs=51.4

Q ss_pred             CCcchHHHHHHHHhccC--CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          49 ESPSDHCLVLELLSGHL--KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        49 ~~p~~~~~~~~~l~~~~--~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+...+.|++...+.+  .++++|||+=||.|.++..+|+...   +|+|+|+++..++.|+++.+.
T Consensus       273 ~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~---~V~gvEi~~~aV~~A~~NA~~  337 (432)
T COG2265         273 VNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK---KVHGVEISPEAVEAAQENAAA  337 (432)
T ss_pred             cCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC---EEEEEecCHHHHHHHHHHHHH
Confidence            34555566666655544  5788999999999999999997664   599999999999999999876

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.61  E-value=0.0057  Score=53.91  Aligned_cols=61  Identities=30%  Similarity=0.315  Sum_probs=46.4

Q ss_pred             cchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          51 PSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        51 p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      |=+...+++.|.  .+++..++|..-|.|..+..+.+..++ ++++++|.++..++.+++.+..
T Consensus         6 PVll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~   66 (310)
T PF01795_consen    6 PVLLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKK   66 (310)
T ss_dssp             -TTHHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCC
T ss_pred             cccHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhh
Confidence            445678888887  889999999999999999999998877 9999999999999988877754

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=96.56  E-value=0.036  Score=52.55  Aligned_cols=66  Identities=17%  Similarity=0.152  Sum_probs=45.1

Q ss_pred             ccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHHH
Q psy7837          45 NAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGI---SGKVYTIEHIPELLEAARKRV  112 (299)
Q Consensus        45 ~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~---~g~v~~~d~~~~~~~~a~~~l  112 (299)
                      |+......+...+.+.+.  ..+..+|.|..||+|.+-....+.++.   +...+|.|+++.....++-++
T Consensus       166 GEfyTP~~v~~liv~~l~--~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~  234 (489)
T COG0286         166 GEFYTPREVSELIVELLD--PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNL  234 (489)
T ss_pred             CccCChHHHHHHHHHHcC--CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHH
Confidence            666666666666666666  478889999999999887777766653   244566666555555555444

>TIGR00417 speE spermidine synthase

Probab=96.55  E-value=0.048  Score=47.51  Aligned_cols=48  Identities=19%  Similarity=0.155  Sum_probs=39.6

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+.+||++|||+|..+..+.+.. ...++..+|+++.+++.+++.+..
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~  118 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPS  118 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHh
Confidence            445699999999999988777653 245899999999999999987765

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=96.54  E-value=0.0064  Score=52.12  Aligned_cols=51  Identities=20%  Similarity=0.296  Sum_probs=42.4

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHH
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNI  173 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~  173 (299)
                      +..+......++|||||+++|+-++.+++.   +.+++++|.++...+.|++++
T Consensus        71 L~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~  124 (247)
T PLN02589         71 LNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVI  124 (247)
T ss_pred             HHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHH
Confidence            344445567889999999999999999864   568999999999999988873

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=96.51  E-value=0.01  Score=47.06  Aligned_cols=63  Identities=19%  Similarity=0.175  Sum_probs=51.6

Q ss_pred             CCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          49 ESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        49 ~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      +++.+.++|.....  ...|-.|||+|.|+|-+|..+.+..-++..++++|++++++..-.+...
T Consensus        32 sSs~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p   94 (194)
T COG3963          32 SSSILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP   94 (194)
T ss_pred             CcHHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC
Confidence            45556666666665  7888999999999999999888877778899999999999987766544

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=96.50  E-value=0.0035  Score=51.26  Aligned_cols=45  Identities=24%  Similarity=0.409  Sum_probs=37.3

Q ss_pred             CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          67 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        67 ~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .-.++||+|||.|.+|..|+...   .++.++|+++..++.|++++..
T Consensus        43 ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~   87 (201)
T PF05401_consen   43 RYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG   87 (201)
T ss_dssp             SEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT
T ss_pred             ccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC
Confidence            34689999999999999999875   3799999999999999999876

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=96.49  E-value=0.0089  Score=49.55  Aligned_cols=70  Identities=19%  Similarity=0.291  Sum_probs=46.8

Q ss_pred             ccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          43 GHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        43 ~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .....+-+|++..-- .++...+++|+.|+|+-||.|+++..+++. ++..+|+++|+++..++..++++..
T Consensus        78 D~~kvyfs~rl~~Er-~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~l  147 (200)
T PF02475_consen   78 DLSKVYFSPRLSTER-RRIANLVKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRL  147 (200)
T ss_dssp             ETTTS---GGGHHHH-HHHHTC--TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHH
T ss_pred             ccceEEEccccHHHH-HHHHhcCCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHH
Confidence            344556666653222 244445889999999999999999999874 3456899999999999999998876

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.49  E-value=0.015  Score=52.33  Aligned_cols=98  Identities=15%  Similarity=0.086  Sum_probs=62.5

Q ss_pred             ccCCCCeEEEEcCC-CcHHHHHHHHc-CC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCe-EEEEcCCCCCCCCCCCe
Q psy7837         128 HLVYGSKVLDIGSG-SGYLSALFAYM-GA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENF-EFVCADGRRGYPDAAPY  203 (299)
Q Consensus       128 ~~~~~~~vLDiG~G-~G~~~~~la~~-~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~f  203 (299)
                      ...++.+||-.||| .|.++..+++. |+ +|+++|.+++.++.+++.         +...+ .....+........+.+
T Consensus       166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l---------Ga~~vi~~~~~~~~~~~~~~g~~  236 (343)
T PRK09880        166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM---------GADKLVNPQNDDLDHYKAEKGYF  236 (343)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc---------CCcEEecCCcccHHHHhccCCCC
Confidence            34578899999886 45555666655 77 599999999888877653         11111 10011111111112358


Q ss_pred             eEEEecchhhhHHHHHHHhccCCcEEEEEec
Q psy7837         204 DVIYISQAIRDIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       204 D~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      |+|+-...-....+...+.|++||++++.-.
T Consensus       237 D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        237 DVSFEVSGHPSSINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             CEEEECCCCHHHHHHHHHHhhcCCEEEEEcc
Confidence            9998766655566788899999999988643

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=96.43  E-value=0.0073  Score=43.11  Aligned_cols=39  Identities=36%  Similarity=0.607  Sum_probs=33.9

Q ss_pred             EEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy7837          70 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK  110 (299)
Q Consensus        70 ~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~  110 (299)
                      +++|+|||.|..+..+++  ....+++++|.++...+.+++
T Consensus         1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~   39 (107)
T cd02440           1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARK   39 (107)
T ss_pred             CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHH
Confidence            489999999999998887  345799999999999988875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.40  E-value=0.012  Score=49.48  Aligned_cols=43  Identities=30%  Similarity=0.314  Sum_probs=36.3

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHH
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMK  171 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~  171 (299)
                      ..+|..|||..||+|+.+.+..++|.+.+++|+++..++.|++
T Consensus       189 t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  189 TNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             S-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred             hccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence            3568999999999999999999999999999999999998864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=96.34  E-value=0.015  Score=48.41  Aligned_cols=105  Identities=21%  Similarity=0.190  Sum_probs=57.8

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHc-CCe-EEEEeCChHHHHHHHHHHHhcCCc----ccCCCCeEEEEcCCCCCCCC-
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYM-GAK-VYAIEHVKNLCKRAMKNIRRGAPA----IALAENFEFVCADGRRGYPD-  199 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~-~~~-v~~~D~~~~~~~~a~~~~~~~~~~----~~~~~~v~~~~~d~~~~~~~-  199 (299)
                      ..+.++...+|+|||.|.....++.. +++ .+|||+.+...+.++...+....-    .....++++..+|+...... 
T Consensus        38 ~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~  117 (205)
T PF08123_consen   38 LNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVK  117 (205)
T ss_dssp             TT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHH
T ss_pred             hCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHh
Confidence            35678999999999999998877644 665 999999999887776544321000    01245778888887642110 


Q ss_pred             --CCCeeEEEecchh--hhHH---HHHHHhccCCcEEEE
Q psy7837         200 --AAPYDVIYISQAI--RDIP---WHIVDQLKLGGRMLF  231 (299)
Q Consensus       200 --~~~fD~v~~~~~~--~~~~---~~~~~~L~~gG~lv~  231 (299)
                        -..-|+|++++..  +.+.   .+....||+|-+++.
T Consensus       118 ~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  118 DIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIS  156 (205)
T ss_dssp             HHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred             hhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEE
Confidence              0236999998764  1222   355567788777654

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.31  E-value=0.029  Score=49.75  Aligned_cols=125  Identities=14%  Similarity=0.155  Sum_probs=74.1

Q ss_pred             HHHHHHHhHHHHHHHHhhhcc---cCCCCeEEEEcCCCcHHHHHHHHc--C-CeEEEEeCChHHHHHHHHHHHhcCCccc
Q psy7837         108 ARKRVKAKAETYIKRINFYGH---LVYGSKVLDIGSGSGYLSALFAYM--G-AKVYAIEHVKNLCKRAMKNIRRGAPAIA  181 (299)
Q Consensus       108 a~~~l~~~~~~~~~~~~~~~~---~~~~~~vLDiG~G~G~~~~~la~~--~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~  181 (299)
                      ....+.....++++.+..+..   -...+++||+|.|.|....++...  . .+++-++.|+.+-+......+.     .
T Consensus        87 ias~lp~~Yasv~asL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~n-----v  161 (484)
T COG5459          87 IASRLPQTYASVRASLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAEN-----V  161 (484)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhh-----c
Confidence            333444444455555555443   345578999999999877666543  2 3477788887765554443332     2


Q ss_pred             CCCCeEEEEcCCCC---CCCCCCCeeEEEecchh---------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         182 LAENFEFVCADGRR---GYPDAAPYDVIYISQAI---------RDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       182 ~~~~v~~~~~d~~~---~~~~~~~fD~v~~~~~~---------~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      ..........|+..   .++....|+++++..-+         ....+.+..+++|||.||+......
T Consensus       162 ~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp  229 (484)
T COG5459         162 STEKTDWRASDVTEDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP  229 (484)
T ss_pred             ccccCCCCCCccchhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence            22233333444432   22333567777665433         1245788999999999999886543

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=96.30  E-value=0.0079  Score=54.51  Aligned_cols=62  Identities=24%  Similarity=0.308  Sum_probs=47.2

Q ss_pred             CcchHHHHHHHHhccCCC-CCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          50 SPSDHCLVLELLSGHLKY-GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        50 ~p~~~~~~~~~l~~~~~~-g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .+.....+++.+.+.+.+ +..|||+-||.|.++..+|....   +|+|+|+++..++.|++++..
T Consensus       178 N~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~---~V~gvE~~~~av~~A~~Na~~  240 (352)
T PF05958_consen  178 NPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAK---KVIGVEIVEEAVEDARENAKL  240 (352)
T ss_dssp             BHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSS---EEEEEES-HHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCC---eEEEeeCCHHHHHHHHHHHHH
Confidence            444556666666554432 23899999999999999998764   699999999999999999876

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=96.27  E-value=0.015  Score=50.89  Aligned_cols=69  Identities=17%  Similarity=0.111  Sum_probs=54.1

Q ss_pred             eEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC--CCCeeEEEecc
Q psy7837         134 KVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD--AAPYDVIYISQ  210 (299)
Q Consensus       134 ~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~v~~~~  210 (299)
                      +|+|+.||.|.++..+.+.|.+ +.++|+++..++..+.|...           .++.+|+......  ...+|+++.+.
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-----------~~~~~Di~~~~~~~~~~~~D~l~~gp   70 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-----------KLIEGDITKIDEKDFIPDIDLLTGGF   70 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-----------CCccCccccCchhhcCCCCCEEEeCC
Confidence            6899999999999999999887 88999999999999888533           1456666643321  25699999988


Q ss_pred             hhh
Q psy7837         211 AIR  213 (299)
Q Consensus       211 ~~~  213 (299)
                      +..
T Consensus        71 PCq   73 (275)
T cd00315          71 PCQ   73 (275)
T ss_pred             CCh
Confidence            753

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=96.23  E-value=0.012  Score=52.24  Aligned_cols=68  Identities=26%  Similarity=0.265  Sum_probs=48.1

Q ss_pred             cccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHh------CCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          44 HNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMV------GISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        44 ~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~------~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      .|+......+...|.+.+.  ..++++|+|.+||+|.+-..+.+.+      .....++|+|+++..+..++-++.
T Consensus        25 ~G~~~TP~~i~~l~~~~~~--~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~   98 (311)
T PF02384_consen   25 LGQFYTPREIVDLMVKLLN--PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL   98 (311)
T ss_dssp             CGGC---HHHHHHHHHHHT--T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH
T ss_pred             cceeehHHHHHHHHHhhhh--ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh
Confidence            4566666666677777774  7889999999999999988777654      245689999999999988876653

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=96.22  E-value=0.02  Score=46.37  Aligned_cols=49  Identities=24%  Similarity=0.379  Sum_probs=37.8

Q ss_pred             cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ....+.+|||+|||+|..+..++... ...+|+..|.++ .++..+.++..
T Consensus        42 ~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~   90 (173)
T PF10294_consen   42 ELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIEL   90 (173)
T ss_dssp             GGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHT
T ss_pred             hhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHh
Confidence            46788999999999999999998884 346899999999 88888888775

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG3010|consensus

Probab=96.18  E-value=0.01  Score=49.82  Aligned_cols=47  Identities=19%  Similarity=0.261  Sum_probs=38.0

Q ss_pred             CCCCC-EEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGD-KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~-~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..++. ..+|+|||+|..+..+++...   .|+++|.++.|++.+++....
T Consensus        30 ~~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~   77 (261)
T KOG3010|consen   30 RTEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPV   77 (261)
T ss_pred             hCCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCc
Confidence            44555 678999999988888888765   599999999999988776544

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.18  E-value=0.14  Score=45.29  Aligned_cols=153  Identities=14%  Similarity=0.112  Sum_probs=81.2

Q ss_pred             hccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEE-EEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcC
Q psy7837          62 SGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVY-TIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGS  140 (299)
Q Consensus        62 ~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~-~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~  140 (299)
                      .+.+++|..|+ +|++.-+....+.+.   .-.++ ..+.+...+..+   .......+...+........+.+|+-+|+
T Consensus        88 l~~l~~~~~v~-~G~~~~~~~~~~~~~---gi~~~~~~~~~~~~~~ns---~~~aegav~~a~~~~~~~l~g~kvlViG~  160 (296)
T PRK08306         88 LELTPEHCTIF-SGIANPYLKELAKET---NRKLVELFERDDVAILNS---IPTAEGAIMMAIEHTPITIHGSNVLVLGF  160 (296)
T ss_pred             HHhcCCCCEEE-EecCCHHHHHHHHHC---CCeEEEEeccchhhhhcc---HhHHHHHHHHHHHhCCCCCCCCEEEEECC
Confidence            33477786555 799988877554422   12233 222211111111   11111122222322223346899999999


Q ss_pred             CC-cHHHH-HHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEc-CCCCCCCCCCCeeEEEecchhhhHHH
Q psy7837         141 GS-GYLSA-LFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA-DGRRGYPDAAPYDVIYISQAIRDIPW  217 (299)
Q Consensus       141 G~-G~~~~-~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~fD~v~~~~~~~~~~~  217 (299)
                      |. |.... .+...|++|+.+|.++...+.++..         +   ..++.. +....   -..+|+|+...+...+.+
T Consensus       161 G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~---------G---~~~~~~~~l~~~---l~~aDiVI~t~p~~~i~~  225 (296)
T PRK08306        161 GRTGMTLARTLKALGANVTVGARKSAHLARITEM---------G---LSPFHLSELAEE---VGKIDIIFNTIPALVLTK  225 (296)
T ss_pred             cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc---------C---CeeecHHHHHHH---hCCCCEEEECCChhhhhH
Confidence            83 33333 2345599999999997765554321         1   122211 11111   145899998766555667


Q ss_pred             HHHHhccCCcEEEEEecCC
Q psy7837         218 HIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       218 ~~~~~L~~gG~lv~~~~~~  236 (299)
                      +..+.+++|+.++-....+
T Consensus       226 ~~l~~~~~g~vIIDla~~p  244 (296)
T PRK08306        226 EVLSKMPPEALIIDLASKP  244 (296)
T ss_pred             HHHHcCCCCcEEEEEccCC
Confidence            7888899988766444433

>KOG1271|consensus

Probab=96.15  E-value=0.016  Score=46.73  Aligned_cols=63  Identities=21%  Similarity=0.308  Sum_probs=47.4

Q ss_pred             cchHHHHHHHHhccC------CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          51 PSDHCLVLELLSGHL------KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        51 p~~~~~~~~~l~~~~------~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .....+++++|.+..      +..++|||+|||.|.+-..|++.- -++.++|+|.++..++.|.....+
T Consensus        45 ~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~  113 (227)
T KOG1271|consen   45 EDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAER  113 (227)
T ss_pred             CcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHh
Confidence            334467777776533      245599999999999988888753 356799999999999987765544

>KOG3115|consensus

Probab=96.13  E-value=0.03  Score=45.90  Aligned_cols=104  Identities=15%  Similarity=0.141  Sum_probs=68.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCCe--EEEEeCChHHHHHHHHHHHhc--CCcccCCCCeEEEEcCCCCCCC---CCCCe
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGAK--VYAIEHVKNLCKRAMKNIRRG--APAIALAENFEFVCADGRRGYP---DAAPY  203 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~~--v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~v~~~~~d~~~~~~---~~~~f  203 (299)
                      ....+.|||||=|.+...++....+  +.|.|+-....+..+++++..  .++.+...|+.+...+.....+   ..+..
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL  139 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL  139 (249)
T ss_pred             ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence            4568999999999999999988554  999999888888887777541  1111335677777777664322   22222


Q ss_pred             eEEEecchh--------------hhHHHHHHHhccCCcEEEEEec
Q psy7837         204 DVIYISQAI--------------RDIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       204 D~v~~~~~~--------------~~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      +-.+.-.+-              ..+..+..-+|++||.++..+.
T Consensus       140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD  184 (249)
T KOG3115|consen  140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD  184 (249)
T ss_pred             ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence            222222211              2344577779999999998754

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.10  E-value=0.059  Score=51.07  Aligned_cols=97  Identities=25%  Similarity=0.281  Sum_probs=64.6

Q ss_pred             cCCCCeEEEEcCC-CcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEE--EEcCCC---------C
Q psy7837         129 LVYGSKVLDIGSG-SGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF--VCADGR---------R  195 (299)
Q Consensus       129 ~~~~~~vLDiG~G-~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~--~~~d~~---------~  195 (299)
                      ..++.+|+-+||| .|..++..++. |++|+++|.+++.++.+++.         +...+.+  ...+..         .
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl---------GA~~v~i~~~e~~~~~~gya~~~s~  232 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM---------GAEFLELDFEEEGGSGDGYAKVMSE  232 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc---------CCeEEEeccccccccccchhhhcch
Confidence            4678999999999 66677666654 99999999999999988763         1111111  000000         0


Q ss_pred             C--------CCC-CCCeeEEEecchhh-----hH-HHHHHHhccCCcEEEEEec
Q psy7837         196 G--------YPD-AAPYDVIYISQAIR-----DI-PWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       196 ~--------~~~-~~~fD~v~~~~~~~-----~~-~~~~~~~L~~gG~lv~~~~  234 (299)
                      .        +.+ ...+|+|+......     .+ .++..+.+|+||.++....
T Consensus       233 ~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        233 EFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             hHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence            0        000 13599999877652     24 5899999999999887654

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.10  E-value=0.019  Score=47.95  Aligned_cols=85  Identities=15%  Similarity=0.147  Sum_probs=57.1

Q ss_pred             CCCeEEEEcCCCcHHH--HHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCC-CCCC----CCCCe
Q psy7837         131 YGSKVLDIGSGSGYLS--ALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGR-RGYP----DAAPY  203 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~--~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~-~~~~----~~~~f  203 (299)
                      ++-++||||.|.--.=  +-....|.+.+|.|+++..++.|+.++..|.   .....+++....-. ..+.    ..+.|
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~---~l~~~I~lr~qk~~~~if~giig~nE~y  154 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANP---GLERAIRLRRQKDSDAIFNGIIGKNERY  154 (292)
T ss_pred             CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCc---chhhheeEEeccCcccccccccccccee
Confidence            4568999998854322  2223459999999999999999999998742   22334555443222 2111    23679


Q ss_pred             eEEEecchhhhHHHH
Q psy7837         204 DVIYISQAIRDIPWH  218 (299)
Q Consensus       204 D~v~~~~~~~~~~~~  218 (299)
                      |++.|+++++.-.++
T Consensus       155 d~tlCNPPFh~s~~d  169 (292)
T COG3129         155 DATLCNPPFHDSAAD  169 (292)
T ss_pred             eeEecCCCcchhHHH
Confidence            999999999866543

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=96.09  E-value=0.011  Score=52.71  Aligned_cols=63  Identities=19%  Similarity=0.189  Sum_probs=51.8

Q ss_pred             cCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHh
Q psy7837          48 MESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK  115 (299)
Q Consensus        48 ~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~  115 (299)
                      ...|.+.+.++....  +++|+.|||-=||||.+...+.-..   .+++|.|++..|++-++.|+...
T Consensus       180 s~~P~lAR~mVNLa~--v~~G~~vlDPFcGTGgiLiEagl~G---~~viG~Did~~mv~gak~Nl~~y  242 (347)
T COG1041         180 SMDPRLARAMVNLAR--VKRGELVLDPFCGTGGILIEAGLMG---ARVIGSDIDERMVRGAKINLEYY  242 (347)
T ss_pred             CcCHHHHHHHHHHhc--cccCCEeecCcCCccHHHHhhhhcC---ceEeecchHHHHHhhhhhhhhhh
Confidence            346777666666555  9999999999999999877766543   47999999999999999999874

>PRK03612 spermidine synthase; Provisional

Probab=96.07  E-value=0.053  Score=51.85  Aligned_cols=46  Identities=22%  Similarity=0.195  Sum_probs=38.8

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~  111 (299)
                      .++..+|||+|||+|..+..+.+. +...+++.+|+++.+++.++++
T Consensus       295 ~~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~  340 (521)
T PRK03612        295 SARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTS  340 (521)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhC
Confidence            356789999999999999888764 2236999999999999999983

>PRK13699 putative methylase; Provisional

Probab=96.06  E-value=0.018  Score=48.86  Aligned_cols=47  Identities=19%  Similarity=0.169  Sum_probs=43.6

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHh
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRR  175 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~  175 (299)
                      ..+|..|||..||+|+.+.+..+.|.+++|+|+++...+.+.++++.
T Consensus       161 s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~  207 (227)
T PRK13699        161 THPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA  207 (227)
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999999888865

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.03  E-value=0.051  Score=45.02  Aligned_cols=99  Identities=11%  Similarity=0.124  Sum_probs=52.9

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc------CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC-------
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM------GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG-------  196 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~------~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-------  196 (299)
                      .+...|+|+|.-.|.-+..+|++      ..+|+++|++-........  +..    ....++++++||..+.       
T Consensus        31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~--e~h----p~~~rI~~i~Gds~d~~~~~~v~  104 (206)
T PF04989_consen   31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAI--ESH----PMSPRITFIQGDSIDPEIVDQVR  104 (206)
T ss_dssp             H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GG--GG--------TTEEEEES-SSSTHHHHTSG
T ss_pred             hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHH--hhc----cccCceEEEECCCCCHHHHHHHH
Confidence            34789999999999888877654      3679999996443322111  110    2347999999998742       


Q ss_pred             -CCCCCCeeEEEecchh--hhHH---HHHHHhccCCcEEEEEec
Q psy7837         197 -YPDAAPYDVIYISQAI--RDIP---WHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       197 -~~~~~~fD~v~~~~~~--~~~~---~~~~~~L~~gG~lv~~~~  234 (299)
                       ........+|+.+..-  .++.   +....++++|+++++...
T Consensus       105 ~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt  148 (206)
T PF04989_consen  105 ELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDT  148 (206)
T ss_dssp             SS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred             HhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence             1112344577766651  2333   457889999999998654

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=96.00  E-value=0.042  Score=49.72  Aligned_cols=95  Identities=16%  Similarity=0.214  Sum_probs=60.0

Q ss_pred             cCCCCeEEEEcCC-CcHHHHHHHHc-CCeEEEEeC---ChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCe
Q psy7837         129 LVYGSKVLDIGSG-SGYLSALFAYM-GAKVYAIEH---VKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPY  203 (299)
Q Consensus       129 ~~~~~~vLDiG~G-~G~~~~~la~~-~~~v~~~D~---~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  203 (299)
                      ..++.+||-+|+| .|.++..+++. |++|++++.   ++...+.+++.         +...+.....+... ......+
T Consensus       170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~---------Ga~~v~~~~~~~~~-~~~~~~~  239 (355)
T cd08230         170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEEL---------GATYVNSSKTPVAE-VKLVGEF  239 (355)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc---------CCEEecCCccchhh-hhhcCCC
Confidence            4578999999987 45666666655 789999987   56666655532         11111111111111 1112469


Q ss_pred             eEEEecchhhhHHHHHHHhccCCcEEEEEe
Q psy7837         204 DVIYISQAIRDIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       204 D~v~~~~~~~~~~~~~~~~L~~gG~lv~~~  233 (299)
                      |+|+-............+.|+++|++++.-
T Consensus       240 d~vid~~g~~~~~~~~~~~l~~~G~~v~~G  269 (355)
T cd08230         240 DLIIEATGVPPLAFEALPALAPNGVVILFG  269 (355)
T ss_pred             CEEEECcCCHHHHHHHHHHccCCcEEEEEe
Confidence            999877665556778899999999988754

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=95.98  E-value=0.014  Score=47.53  Aligned_cols=48  Identities=23%  Similarity=0.308  Sum_probs=36.5

Q ss_pred             HHHHHHhc--cCCCC--CEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHH
Q psy7837          56 LVLELLSG--HLKYG--DKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPE  103 (299)
Q Consensus        56 ~~~~~l~~--~~~~g--~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~  103 (299)
                      ++.+.+..  .+.++  .+|||+||++|.|+.++.+..++.++++|+|..+.
T Consensus         8 KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen    8 KLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             HHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             HHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            44444433  13454  89999999999999999999877789999999876

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PRK01581 speE spermidine synthase; Validated

Probab=95.93  E-value=0.026  Score=50.88  Aligned_cols=45  Identities=18%  Similarity=0.152  Sum_probs=37.3

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK  110 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~  110 (299)
                      .....+||++|||.|.....+.+. .+..+++.+|+++.+++.|++
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~  192 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARN  192 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHh
Confidence            455679999999999987777764 234689999999999999996

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=95.89  E-value=0.017  Score=48.61  Aligned_cols=44  Identities=30%  Similarity=0.387  Sum_probs=37.1

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~  111 (299)
                      ..++.+||..|||.|+...+|++..   -.|+|+|+++..++.+.+.
T Consensus        35 ~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e   78 (218)
T PF05724_consen   35 LKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEE   78 (218)
T ss_dssp             TSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHH
T ss_pred             CCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHH
Confidence            7788899999999999999999863   3799999999999887543

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=95.81  E-value=0.02  Score=45.72  Aligned_cols=44  Identities=30%  Similarity=0.341  Sum_probs=37.1

Q ss_pred             CEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHh
Q psy7837          69 DKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK  115 (299)
Q Consensus        69 ~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~  115 (299)
                      +.|+|+.||.|..+..+|+...   +|+++|+++..++.++.+..-+
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vY   44 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVY   44 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHT
T ss_pred             CEEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHc
Confidence            3689999999999999999854   6999999999999999998763

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=95.78  E-value=0.073  Score=47.64  Aligned_cols=89  Identities=19%  Similarity=0.184  Sum_probs=59.6

Q ss_pred             CCCHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc---
Q psy7837          77 GSGYLTTLFGAMVGISG-KVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM---  152 (299)
Q Consensus        77 G~G~~~~~la~~~~~~g-~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~---  152 (299)
                      +.||.+.  +...|..| .+++.+++..+-+..-..+.+.        +........-.++|+|+|+|.++.-+.+.   
T Consensus        32 ~~GYYs~--~~~~G~~GDFiTApels~lFGella~~~~~~--------wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~  101 (370)
T COG1565          32 EHGYYSS--AVKIGRKGDFITAPELSQLFGELLAEQFLQL--------WQELGRPAPLKLVEIGAGRGTLASDILRTLRR  101 (370)
T ss_pred             CCccccc--chhccccCCeeechhHHHHHHHHHHHHHHHH--------HHHhcCCCCceEEEeCCCcChHHHHHHHHHHH
Confidence            4577766  44555544 6777887776655443333321        11112233568999999999999876542   


Q ss_pred             -------CCeEEEEeCChHHHHHHHHHHHh
Q psy7837         153 -------GAKVYAIEHVKNLCKRAMKNIRR  175 (299)
Q Consensus       153 -------~~~v~~~D~~~~~~~~a~~~~~~  175 (299)
                             ..++.-+|+|++..+.=+++++.
T Consensus       102 L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~  131 (370)
T COG1565         102 LYPELYEALSYYIIEPSPELRARQKETLKA  131 (370)
T ss_pred             hCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence                   46799999999999888888766

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=95.76  E-value=0.038  Score=50.42  Aligned_cols=98  Identities=20%  Similarity=0.184  Sum_probs=72.2

Q ss_pred             CCeEEEEcCCCcHHHHHHHHc--C-CeEEEEeCChHHHHHHHHHHHhcCCcccCCC-CeEEEEcCCCCCC-CCCCCeeEE
Q psy7837         132 GSKVLDIGSGSGYLSALFAYM--G-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAE-NFEFVCADGRRGY-PDAAPYDVI  206 (299)
Q Consensus       132 ~~~vLDiG~G~G~~~~~la~~--~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~-~v~~~~~d~~~~~-~~~~~fD~v  206 (299)
                      +-++||.=+|+|.=++-++.-  + ..|+.-|+|+++++.+++|++.|    +... .+++.+.|+.... .....||+|
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N----~~~~~~~~v~~~DAn~ll~~~~~~fD~I  125 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN----GLEDERIEVSNMDANVLLYSRQERFDVI  125 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC----T-SGCCEEEEES-HHHHHCHSTT-EEEE
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc----cccCceEEEehhhHHHHhhhccccCCEE
Confidence            458999999999999887765  3 46999999999999999999985    3333 5888898987543 234779999


Q ss_pred             Eecch--hhhHHHHHHHhccCCcEEEEEe
Q psy7837         207 YISQA--IRDIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       207 ~~~~~--~~~~~~~~~~~L~~gG~lv~~~  233 (299)
                      =+++-  .....+.+.+.++.||.|.+..
T Consensus       126 DlDPfGSp~pfldsA~~~v~~gGll~vTa  154 (377)
T PF02005_consen  126 DLDPFGSPAPFLDSALQAVKDGGLLCVTA  154 (377)
T ss_dssp             EE--SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeCCCCCccHhHHHHHHHhhcCCEEEEec
Confidence            88763  3356688889999999999964

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>KOG2793|consensus

Probab=95.75  E-value=0.09  Score=44.90  Aligned_cols=105  Identities=19%  Similarity=0.190  Sum_probs=62.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCccc-CCCCeEEEEcCCCCCC---CCCCC-ee
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIA-LAENFEFVCADGRRGY---PDAAP-YD  204 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~-~~~~v~~~~~d~~~~~---~~~~~-fD  204 (299)
                      ...+|||+|+|+|..++.++.. +..|...|....... .+.+...++..+. ....+.+...+.....   ..... +|
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~-L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D  164 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVEN-LKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD  164 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHH-HHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence            4567999999999888888874 778888887544322 2222211110001 1224444444333211   11122 89


Q ss_pred             EEEecchh------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         205 VIYISQAI------RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       205 ~v~~~~~~------~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +|++..++      +.+...+..+|..+|.+++...-.
T Consensus       165 lilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr  202 (248)
T KOG2793|consen  165 LILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLR  202 (248)
T ss_pred             EEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence            88887764      456678888888999666665543

>KOG4589|consensus

Probab=95.73  E-value=0.03  Score=45.31  Aligned_cols=97  Identities=16%  Similarity=0.118  Sum_probs=66.5

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEc-CCCCC------
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA-DGRRG------  196 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-d~~~~------  196 (299)
                      .-+.|+.+|||+||..|.++....++   ...|.++|+-+-                .....+.++.+ |+.++      
T Consensus        65 ~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~----------------~p~~Ga~~i~~~dvtdp~~~~ki  128 (232)
T KOG4589|consen   65 RFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI----------------EPPEGATIIQGNDVTDPETYRKI  128 (232)
T ss_pred             cccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec----------------cCCCCcccccccccCCHHHHHHH
Confidence            34678999999999999999988776   456999998542                12345566666 55532      


Q ss_pred             --CCCCCCeeEEEecchhh--------h---------HHHHHHHhccCCcEEEEEecCCCCc
Q psy7837         197 --YPDAAPYDVIYISQAIR--------D---------IPWHIVDQLKLGGRMLFIKGHEDDI  239 (299)
Q Consensus       197 --~~~~~~fD~v~~~~~~~--------~---------~~~~~~~~L~~gG~lv~~~~~~~~~  239 (299)
                        ..+..+.|+|++++.-.        +         +.--....++|+|.+++-.......
T Consensus       129 ~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~  190 (232)
T KOG4589|consen  129 FEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEE  190 (232)
T ss_pred             HHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCch
Confidence              12346789999887531        1         1123456788999999988765433

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=95.68  E-value=0.12  Score=46.84  Aligned_cols=99  Identities=17%  Similarity=0.195  Sum_probs=68.4

Q ss_pred             cCCCCeEEEEcCC-CcHHHHHHHHc-C-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEc-CCC-C--CCCCCC
Q psy7837         129 LVYGSKVLDIGSG-SGYLSALFAYM-G-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA-DGR-R--GYPDAA  201 (299)
Q Consensus       129 ~~~~~~vLDiG~G-~G~~~~~la~~-~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-d~~-~--~~~~~~  201 (299)
                      ..++.+|+-+||| -|.++..+++. | .+|+.+|.++.-++.|++...        ...+..... +.. .  ......
T Consensus       166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g--------~~~~~~~~~~~~~~~~~~~t~g~  237 (350)
T COG1063         166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG--------ADVVVNPSEDDAGAEILELTGGR  237 (350)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCC--------CeEeecCccccHHHHHHHHhCCC
Confidence            3455599999999 67777777766 5 469999999999999988421        111111111 111 0  111123


Q ss_pred             CeeEEEecchhhhHHHHHHHhccCCcEEEEEecC
Q psy7837         202 PYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       202 ~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      .+|+++-..........+.+.+++||.+++.--.
T Consensus       238 g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         238 GADVVIEAVGSPPALDQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             CCCEEEECCCCHHHHHHHHHHhcCCCEEEEEecc
Confidence            6999998888777788999999999999987544

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=95.68  E-value=0.052  Score=49.71  Aligned_cols=47  Identities=21%  Similarity=0.240  Sum_probs=41.2

Q ss_pred             CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          67 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        67 ~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ++.+|||++||+|..+..++...+ ..+|+++|+++..++.+++++..
T Consensus        57 ~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~  103 (382)
T PRK04338         57 PRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLEL  103 (382)
T ss_pred             CCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHH
Confidence            457999999999999999988765 34799999999999999999865

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=95.65  E-value=0.039  Score=45.62  Aligned_cols=44  Identities=20%  Similarity=0.211  Sum_probs=37.4

Q ss_pred             EEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          70 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        70 ~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      -+||||||.|.+...+|.... +-.++|+|+....+..+.+.+..
T Consensus        20 l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~   63 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEK   63 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHH
T ss_pred             eEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHh
Confidence            779999999999999999874 67899999999999988888776

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=95.64  E-value=0.11  Score=46.60  Aligned_cols=93  Identities=19%  Similarity=0.131  Sum_probs=61.3

Q ss_pred             cccCCCCeEEEEcCC-CcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCee
Q psy7837         127 GHLVYGSKVLDIGSG-SGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYD  204 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G-~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  204 (299)
                      ..+.++.+||-.|+| .|..+..+++. |++|++++.++...+.+++.         +.+.+  +  |....  ....+|
T Consensus       161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~---------Ga~~v--i--~~~~~--~~~~~d  225 (329)
T TIGR02822       161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL---------GAASA--G--GAYDT--PPEPLD  225 (329)
T ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh---------CCcee--c--ccccc--Ccccce
Confidence            567889999999975 44444555554 88899999998887777663         22111  1  11111  113588


Q ss_pred             EEEecchhhhHHHHHHHhccCCcEEEEEec
Q psy7837         205 VIYISQAIRDIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       205 ~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      +++.............+.|+++|++++.-.
T Consensus       226 ~~i~~~~~~~~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       226 AAILFAPAGGLVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             EEEECCCcHHHHHHHHHhhCCCcEEEEEec
Confidence            776555445567788899999999987643

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>KOG2187|consensus

Probab=95.62  E-value=0.011  Score=55.00  Aligned_cols=55  Identities=22%  Similarity=0.314  Sum_probs=45.7

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .-+-+++.  +.++..++|+.||+|.++..+++.+.   +|+|+++++..++-|+.+...
T Consensus       373 s~i~e~~~--l~~~k~llDv~CGTG~iglala~~~~---~ViGvEi~~~aV~dA~~nA~~  427 (534)
T KOG2187|consen  373 STIGEWAG--LPADKTLLDVCCGTGTIGLALARGVK---RVIGVEISPDAVEDAEKNAQI  427 (534)
T ss_pred             HHHHHHhC--CCCCcEEEEEeecCCceehhhhcccc---ceeeeecChhhcchhhhcchh
Confidence            33334444  67788889999999999999999876   499999999999999988765

>KOG1500|consensus

Probab=95.62  E-value=0.027  Score=49.58  Aligned_cols=46  Identities=35%  Similarity=0.452  Sum_probs=37.7

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      -.|..|||+|||+|.++.+.+....+  +|++++.+ .|.+.|++.+..
T Consensus       176 F~~kiVlDVGaGSGILS~FAaqAGA~--~vYAvEAS-~MAqyA~~Lv~~  221 (517)
T KOG1500|consen  176 FQDKIVLDVGAGSGILSFFAAQAGAK--KVYAVEAS-EMAQYARKLVAS  221 (517)
T ss_pred             cCCcEEEEecCCccHHHHHHHHhCcc--eEEEEehh-HHHHHHHHHHhc
Confidence            35778999999999999988877654  89999975 577888887765

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=95.54  E-value=0.21  Score=44.46  Aligned_cols=98  Identities=23%  Similarity=0.187  Sum_probs=65.1

Q ss_pred             hhhcccCCCCeEEEEcCC-CcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC-----
Q psy7837         124 NFYGHLVYGSKVLDIGSG-SGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG-----  196 (299)
Q Consensus       124 ~~~~~~~~~~~vLDiG~G-~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-----  196 (299)
                      .....+.++.+||..|+| .|..+..+++. |.+|++++.++...+.+++.         +..   .+..+-...     
T Consensus       158 ~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~---------g~~---~~~~~~~~~~~~~~  225 (338)
T cd08254         158 VRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKEL---------GAD---EVLNSLDDSPKDKK  225 (338)
T ss_pred             HhccCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---------CCC---EEEcCCCcCHHHHH
Confidence            344567788899998876 46676666664 88899999999888777542         111   111111100     


Q ss_pred             -CCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEe
Q psy7837         197 -YPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       197 -~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~  233 (299)
                       ......+|+++-........++..+.|+++|.++...
T Consensus       226 ~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~g  263 (338)
T cd08254         226 AAGLGGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVVG  263 (338)
T ss_pred             HHhcCCCceEEEECCCCHHHHHHHHHHhhcCCEEEEEC
Confidence             1223569998865545567778899999999998764

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=95.41  E-value=0.034  Score=46.96  Aligned_cols=44  Identities=16%  Similarity=-0.018  Sum_probs=37.5

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~  111 (299)
                      +.++.+||..|||.|....+|++..-   .|+|+|+++..++.+.+.
T Consensus        41 ~~~~~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e   84 (226)
T PRK13256         41 INDSSVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQ   84 (226)
T ss_pred             CCCCCeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHH
Confidence            34678999999999999999998643   599999999999987653

>KOG1562|consensus

Probab=95.41  E-value=0.052  Score=47.07  Aligned_cols=103  Identities=18%  Similarity=0.130  Sum_probs=77.2

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCCCCeeE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDAAPYDV  205 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~  205 (299)
                      ...++||-||-|.|.+....+++.  .++.-+|++.+.++..++-++.-.-+ ....++.+..||.....  ...++||+
T Consensus       120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~g-y~~~~v~l~iGDG~~fl~~~~~~~~dV  198 (337)
T KOG1562|consen  120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACG-YEGKKVKLLIGDGFLFLEDLKENPFDV  198 (337)
T ss_pred             CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcc-cCCCceEEEeccHHHHHHHhccCCceE
Confidence            457899999999999999888773  35999999999998888766542111 34578999999987432  23488999


Q ss_pred             EEecchhh----------hHHHHHHHhccCCcEEEEEe
Q psy7837         206 IYISQAIR----------DIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       206 v~~~~~~~----------~~~~~~~~~L~~gG~lv~~~  233 (299)
                      |+.+..-.          .....+.+.||+||+++...
T Consensus       199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~  236 (337)
T KOG1562|consen  199 IITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG  236 (337)
T ss_pred             EEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence            99876422          22347889999999998865

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=95.22  E-value=0.076  Score=43.43  Aligned_cols=60  Identities=18%  Similarity=0.166  Sum_probs=44.8

Q ss_pred             hHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          53 DHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        53 ~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +-+.++..|.....+|.+|||+-||||.++........  .+++.+|.+.......++++..
T Consensus        28 vrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~   87 (183)
T PF03602_consen   28 VREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEK   87 (183)
T ss_dssp             HHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHH
Confidence            44666777764326799999999999999986555443  3799999999999999999987

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=95.11  E-value=0.11  Score=47.16  Aligned_cols=100  Identities=18%  Similarity=0.120  Sum_probs=62.4

Q ss_pred             hcccCCCCeEEEEcCC-CcHHHHHHHHc-CCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCC-eEEEEcCCCC---CCC
Q psy7837         126 YGHLVYGSKVLDIGSG-SGYLSALFAYM-GAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAEN-FEFVCADGRR---GYP  198 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G-~G~~~~~la~~-~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~-v~~~~~d~~~---~~~  198 (299)
                      ...+.++.+||-.|+| .|..+..+++. |.+ |+++|.++...+.+++.         +.+. +.....+...   ...
T Consensus       171 ~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~---------Ga~~~i~~~~~~~~~~i~~~~  241 (358)
T TIGR03451       171 TGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF---------GATHTVNSSGTDPVEAIRALT  241 (358)
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc---------CCceEEcCCCcCHHHHHHHHh
Confidence            4567889999999875 34555556654 775 99999999888877542         1111 1111111100   011


Q ss_pred             CCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEec
Q psy7837         199 DAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       199 ~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      ....+|+|+-...-....+...+.++++|++++.-.
T Consensus       242 ~~~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       242 GGFGADVVIDAVGRPETYKQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             CCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECC
Confidence            223589998655444556777889999999987643

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=94.98  E-value=0.15  Score=46.00  Aligned_cols=90  Identities=14%  Similarity=0.168  Sum_probs=58.4

Q ss_pred             ccCCCCeEEEEcCC-CcHHHHHHHH--cC-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCe
Q psy7837         128 HLVYGSKVLDIGSG-SGYLSALFAY--MG-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPY  203 (299)
Q Consensus       128 ~~~~~~~vLDiG~G-~G~~~~~la~--~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  203 (299)
                      ...++.+||-+||| .|.++..+++  .| .+|+++|.++.-++.+++ +.       ..    ....+    ..+...+
T Consensus       160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~-------~~----~~~~~----~~~~~g~  223 (341)
T cd08237         160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-AD-------ET----YLIDD----IPEDLAV  223 (341)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cC-------ce----eehhh----hhhccCC
Confidence            35679999999987 4555555555  33 579999999887777754 11       10    10011    1111248


Q ss_pred             eEEEecch---hhhHHHHHHHhccCCcEEEEEe
Q psy7837         204 DVIYISQA---IRDIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       204 D~v~~~~~---~~~~~~~~~~~L~~gG~lv~~~  233 (299)
                      |+|+-...   .....+...+.|+++|++++.-
T Consensus       224 d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G  256 (341)
T cd08237         224 DHAFECVGGRGSQSAINQIIDYIRPQGTIGLMG  256 (341)
T ss_pred             cEEEECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence            99985544   3456677889999999998764

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=94.83  E-value=0.088  Score=39.98  Aligned_cols=84  Identities=19%  Similarity=0.184  Sum_probs=59.4

Q ss_pred             CcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC------CCCCCCCeeEEEecchhhh
Q psy7837         142 SGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR------GYPDAAPYDVIYISQAIRD  214 (299)
Q Consensus       142 ~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~fD~v~~~~~~~~  214 (299)
                      .|..+..+++. |++|+++|.++..++.+++.         +..  .++..+-..      .......+|+|+-......
T Consensus         2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~---------Ga~--~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~   70 (130)
T PF00107_consen    2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKEL---------GAD--HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGD   70 (130)
T ss_dssp             HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT---------TES--EEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHH
T ss_pred             hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh---------ccc--ccccccccccccccccccccccceEEEEecCcHH
Confidence            46777777765 88999999999998888764         211  112221110      1122247999998777778


Q ss_pred             HHHHHHHhccCCcEEEEEecCC
Q psy7837         215 IPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       215 ~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ..+....+|+++|++++.-...
T Consensus        71 ~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   71 TLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             HHHHHHHHEEEEEEEEEESSTS
T ss_pred             HHHHHHHHhccCCEEEEEEccC
Confidence            8889999999999999987665

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=94.82  E-value=0.11  Score=46.67  Aligned_cols=45  Identities=29%  Similarity=0.224  Sum_probs=32.7

Q ss_pred             CCCEEEEEccCCCHHHH-HHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          67 YGDKVLEIGTGSGYLTT-LFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        67 ~g~~vldiG~G~G~~~~-~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ++.+|||+|||-|.... +....   -++++|+|++..-++.|+++...
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~---i~~~vg~Dis~~si~ea~~Ry~~  107 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAK---IKHYVGIDISEESIEEARERYKQ  107 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT----SEEEEEES-HHHHHHHHHHHHH
T ss_pred             CCCeEEEecCCCchhHHHHHhcC---CCEEEEEeCCHHHHHHHHHHHHH
Confidence            89999999999776544 44432   36899999999999999998844

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.81  E-value=0.24  Score=42.32  Aligned_cols=101  Identities=23%  Similarity=0.264  Sum_probs=64.3

Q ss_pred             hhhcccCCCCeEEEEcCCC-cHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC-----
Q psy7837         124 NFYGHLVYGSKVLDIGSGS-GYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG-----  196 (299)
Q Consensus       124 ~~~~~~~~~~~vLDiG~G~-G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-----  196 (299)
                      .....+.++.+||..|+|+ |.....+++. |.+|++++.++...+.+++.         +...  ++.......     
T Consensus       127 ~~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~---------g~~~--~~~~~~~~~~~~~~  195 (271)
T cd05188         127 RRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL---------GADH--VIDYKEEDLEEELR  195 (271)
T ss_pred             HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh---------CCce--eccCCcCCHHHHHH
Confidence            3344557899999999986 5555555554 88999999998777666442         1111  111100000     


Q ss_pred             CCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecC
Q psy7837         197 YPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       197 ~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ......+|+++.............+.|+++|.++.....
T Consensus       196 ~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~  234 (271)
T cd05188         196 LTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGT  234 (271)
T ss_pred             HhcCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEccC
Confidence            112356999987655435667788899999999876544

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=94.81  E-value=0.12  Score=45.22  Aligned_cols=61  Identities=25%  Similarity=0.272  Sum_probs=46.2

Q ss_pred             HHHHHHHhccC--CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHh
Q psy7837          55 CLVLELLSGHL--KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK  115 (299)
Q Consensus        55 ~~~~~~l~~~~--~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~  115 (299)
                      ..++..+...+  ....+|||+|||+|...-.+.+.++.-..++.+|.++.+.+.++..+...
T Consensus        19 ~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~   81 (274)
T PF09243_consen   19 YRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG   81 (274)
T ss_pred             HHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence            45555554332  23468999999999887777777775578999999999999988877653

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>KOG2798|consensus

Probab=94.80  E-value=0.14  Score=44.79  Aligned_cols=39  Identities=23%  Similarity=0.186  Sum_probs=32.6

Q ss_pred             CCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHH
Q psy7837         132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAM  170 (299)
Q Consensus       132 ~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~  170 (299)
                      .-+||-.|||.|.++..++..|..+-|=|.|--|+-.-.
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~  189 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSS  189 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHH
Confidence            458999999999999999999988888888877754433

>PRK10742 putative methyltransferase; Provisional

Probab=94.68  E-value=0.13  Score=43.94  Aligned_cols=54  Identities=15%  Similarity=0.167  Sum_probs=45.8

Q ss_pred             HHHHHHhccCCCCC--EEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          56 LVLELLSGHLKYGD--KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        56 ~~~~~l~~~~~~g~--~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .+++.+.  +++|.  +|||+.+|+|..+..++...+   .|+.+|.++.+....++++.+
T Consensus        77 ~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~G~---~V~~vEr~p~vaalL~dgL~r  132 (250)
T PRK10742         77 AVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLDDGLAR  132 (250)
T ss_pred             HHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHH
Confidence            4444444  78888  999999999999999998743   599999999999999988887

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=94.65  E-value=0.13  Score=46.63  Aligned_cols=70  Identities=17%  Similarity=0.159  Sum_probs=51.7

Q ss_pred             cccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCC-------------------------------C
Q psy7837          44 HNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGI-------------------------------S   92 (299)
Q Consensus        44 ~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~-------------------------------~   92 (299)
                      .+..-..+.+.+.++.+.  ..+++..++|--||||.+.+..|.....                               .
T Consensus       170 ~g~ApLketLAaAil~la--gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~  247 (381)
T COG0116         170 DGPAPLKETLAAAILLLA--GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEER  247 (381)
T ss_pred             CCCCCchHHHHHHHHHHc--CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHH
Confidence            334444455556665443  4889999999999999999887765531                               0


Q ss_pred             c-------eEEEEeCCHHHHHHHHHHHHHh
Q psy7837          93 G-------KVYTIEHIPELLEAARKRVKAK  115 (299)
Q Consensus        93 g-------~v~~~d~~~~~~~~a~~~l~~~  115 (299)
                      .       +++++|+++++++.|+.+....
T Consensus       248 a~~~~~~~~~~G~Did~r~i~~Ak~NA~~A  277 (381)
T COG0116         248 ARRGKELPIIYGSDIDPRHIEGAKANARAA  277 (381)
T ss_pred             HhhcCccceEEEecCCHHHHHHHHHHHHhc
Confidence            1       4789999999999999999873

>KOG2915|consensus

Probab=94.64  E-value=0.12  Score=44.43  Aligned_cols=51  Identities=29%  Similarity=0.353  Sum_probs=42.2

Q ss_pred             HHhhhcccCCCCeEEEEcCCCcHHHHHHHHcC---CeEEEEeCChHHHHHHHHH
Q psy7837         122 RINFYGHLVYGSKVLDIGSGSGYLSALFAYMG---AKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       122 ~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~---~~v~~~D~~~~~~~~a~~~  172 (299)
                      .|..+....||.+|+|-|+|+|+++..+++.-   ..++..|+.+...+.+++.
T Consensus        96 ~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~ee  149 (314)
T KOG2915|consen   96 MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEE  149 (314)
T ss_pred             HHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHH
Confidence            35556678999999999999999999999984   5699999988776666654

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=94.58  E-value=0.19  Score=46.06  Aligned_cols=102  Identities=24%  Similarity=0.246  Sum_probs=65.2

Q ss_pred             hhcccCCCCeEEEEcCCC-cHHHHHHHHc-CC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcC-CCC---CC
Q psy7837         125 FYGHLVYGSKVLDIGSGS-GYLSALFAYM-GA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCAD-GRR---GY  197 (299)
Q Consensus       125 ~~~~~~~~~~vLDiG~G~-G~~~~~la~~-~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d-~~~---~~  197 (299)
                      ....+.++.+||..|||. |..+..+++. |. ++++++.++...+.+++..        ....+.....+ ...   ..
T Consensus       178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~--------~~~vi~~~~~~~~~~~l~~~  249 (386)
T cd08283         178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL--------GAETINFEEVDDVVEALREL  249 (386)
T ss_pred             hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC--------CcEEEcCCcchHHHHHHHHH
Confidence            345678899999999886 7777777765 65 5999999999888877641        11111111111 110   11


Q ss_pred             CCCCCeeEEEecchh---------------------hhHHHHHHHhccCCcEEEEEec
Q psy7837         198 PDAAPYDVIYISQAI---------------------RDIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       198 ~~~~~fD~v~~~~~~---------------------~~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      .....+|+++-...-                     ....+++.+.|+++|+++....
T Consensus       250 ~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~  307 (386)
T cd08283         250 TGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV  307 (386)
T ss_pred             cCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence            122468988764321                     2345678899999999988743

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=94.57  E-value=0.045  Score=48.80  Aligned_cols=35  Identities=20%  Similarity=0.208  Sum_probs=30.2

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP  102 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~  102 (299)
                      +.+|.++||+||++|.||.++.+..   .+|+++|..+
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~rG---~~V~AVD~g~  243 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRRG---MFVTAVDNGP  243 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHcC---CEEEEEechh
Confidence            5789999999999999999999873   3799999543

>PHA01634 hypothetical protein

Probab=94.56  E-value=0.15  Score=38.60  Aligned_cols=47  Identities=15%  Similarity=0.057  Sum_probs=41.1

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      -.+.+|+|||++.|..+++++-...+  +|++++.++.+.+..+++++.
T Consensus        27 vk~KtV~dIGA~iGdSaiYF~l~GAK--~Vva~E~~~kl~k~~een~k~   73 (156)
T PHA01634         27 VYQRTIQIVGADCGSSALYFLLRGAS--FVVQYEKEEKLRKKWEEVCAY   73 (156)
T ss_pred             ecCCEEEEecCCccchhhHHhhcCcc--EEEEeccCHHHHHHHHHHhhh
Confidence            46789999999999999999877654  899999999999999887765

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=94.54  E-value=0.2  Score=44.46  Aligned_cols=86  Identities=21%  Similarity=0.186  Sum_probs=57.4

Q ss_pred             CCCCeEEEEcCC-CcHHHHHHHHc-CCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837         130 VYGSKVLDIGSG-SGYLSALFAYM-GAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI  206 (299)
Q Consensus       130 ~~~~~vLDiG~G-~G~~~~~la~~-~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  206 (299)
                      .++.+||-+||| .|.++..+++. |++ |+.+|.++..++.+...        .      +  .|....  ....+|+|
T Consensus       143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~--------~------~--i~~~~~--~~~g~Dvv  204 (308)
T TIGR01202       143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY--------E------V--LDPEKD--PRRDYRAI  204 (308)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc--------c------c--cChhhc--cCCCCCEE
Confidence            357789999887 56666666654 776 77788887666554321        0      0  111110  12468999


Q ss_pred             EecchhhhHHHHHHHhccCCcEEEEEe
Q psy7837         207 YISQAIRDIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       207 ~~~~~~~~~~~~~~~~L~~gG~lv~~~  233 (299)
                      +-...-....+...+.|+++|++++.-
T Consensus       205 id~~G~~~~~~~~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       205 YDASGDPSLIDTLVRRLAKGGEIVLAG  231 (308)
T ss_pred             EECCCCHHHHHHHHHhhhcCcEEEEEe
Confidence            876666666788899999999999764

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=94.53  E-value=0.18  Score=45.86  Aligned_cols=99  Identities=16%  Similarity=0.042  Sum_probs=62.2

Q ss_pred             hcccCCCCeEEEEcCC-CcHHHHHHHHc-CC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCe-EEEEcCCCC---CCC
Q psy7837         126 YGHLVYGSKVLDIGSG-SGYLSALFAYM-GA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENF-EFVCADGRR---GYP  198 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G-~G~~~~~la~~-~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v-~~~~~d~~~---~~~  198 (299)
                      ...+.++.+||-.|+| .|.++..+++. |+ .|+++|.++..++.+++.         +...+ .....|...   ...
T Consensus       186 ~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~---------Ga~~~i~~~~~~~~~~i~~~~  256 (371)
T cd08281         186 TAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL---------GATATVNAGDPNAVEQVRELT  256 (371)
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc---------CCceEeCCCchhHHHHHHHHh
Confidence            4567889999999876 34555555554 77 599999999888877652         11111 100111110   011


Q ss_pred             CCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEec
Q psy7837         199 DAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       199 ~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      . +.+|+++-........+...+.|+++|++++.-.
T Consensus       257 ~-~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         257 G-GGVDYAFEMAGSVPALETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             C-CCCCEEEECCCChHHHHHHHHHHhcCCEEEEEcc
Confidence            1 2589998655445566778889999999987643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=94.51  E-value=0.18  Score=45.26  Aligned_cols=98  Identities=20%  Similarity=0.201  Sum_probs=75.6

Q ss_pred             CCeEEEEcCCCcHHHHHHHHc-CC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC-CCCeeEEEe
Q psy7837         132 GSKVLDIGSGSGYLSALFAYM-GA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD-AAPYDVIYI  208 (299)
Q Consensus       132 ~~~vLDiG~G~G~~~~~la~~-~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~~  208 (299)
                      ..+|+|.=+|+|.=++-++.- +. .|+.-|+||.+++.+++|++.|     ...+...+..|+...... ...||+|=+
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N-----~~~~~~v~n~DAN~lm~~~~~~fd~IDi  127 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN-----SGEDAEVINKDANALLHELHRAFDVIDI  127 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc-----CcccceeecchHHHHHHhcCCCccEEec
Confidence            789999999999999877755 44 7999999999999999999984     455666666776643322 367999977


Q ss_pred             cch--hhhHHHHHHHhccCCcEEEEEec
Q psy7837         209 SQA--IRDIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       209 ~~~--~~~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      ++-  ..-..+...+.++.+|.+.+...
T Consensus       128 DPFGSPaPFlDaA~~s~~~~G~l~vTAT  155 (380)
T COG1867         128 DPFGSPAPFLDAALRSVRRGGLLCVTAT  155 (380)
T ss_pred             CCCCCCchHHHHHHHHhhcCCEEEEEec
Confidence            653  23455788888899999999753

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=94.50  E-value=0.089  Score=47.13  Aligned_cols=68  Identities=19%  Similarity=0.227  Sum_probs=52.3

Q ss_pred             cccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          44 HNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        44 ~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ....+-+|++..-=. ++....++|++|+|.=||.|+++..++....+.  |+++|+++..++..++++..
T Consensus       166 ~~Kv~Fsprl~~ER~-Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~--V~A~diNP~A~~~L~eNi~L  233 (341)
T COG2520         166 VAKVYFSPRLSTERA-RVAELVKEGETVLDMFAGVGPFSIPIAKKGRPK--VYAIDINPDAVEYLKENIRL  233 (341)
T ss_pred             hHHeEECCCchHHHH-HHHhhhcCCCEEEEccCCcccchhhhhhcCCce--EEEEecCHHHHHHHHHHHHh
Confidence            345666777642211 222336789999999999999999999877653  99999999999999999876

>KOG0822|consensus

Probab=94.46  E-value=0.21  Score=46.75  Aligned_cols=94  Identities=17%  Similarity=0.129  Sum_probs=67.4

Q ss_pred             CCeEEEEcCCCcHHHHHHHH------cCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         132 GSKVLDIGSGSGYLSALFAY------MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       132 ~~~vLDiG~G~G~~~~~la~------~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      -.+++-+|+|.|.+.....+      +-.+++++|-+|+++...+..--.     ....+++++..|+....++....|+
T Consensus       368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~-----~W~~~Vtii~~DMR~w~ap~eq~DI  442 (649)
T KOG0822|consen  368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFE-----CWDNRVTIISSDMRKWNAPREQADI  442 (649)
T ss_pred             eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchh-----hhcCeeEEEeccccccCCchhhccc
Confidence            45788999999988765432      245699999999998777653222     3678999999999975544467898


Q ss_pred             EEecc--------hhhhHHHHHHHhccCCcEEE
Q psy7837         206 IYISQ--------AIRDIPWHIVDQLKLGGRML  230 (299)
Q Consensus       206 v~~~~--------~~~~~~~~~~~~L~~gG~lv  230 (299)
                      +++-.        .-....+-+.+.|||+|+.+
T Consensus       443 ~VSELLGSFGDNELSPECLDG~q~fLkpdgIsI  475 (649)
T KOG0822|consen  443 IVSELLGSFGDNELSPECLDGAQKFLKPDGISI  475 (649)
T ss_pred             hHHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence            87521        12345567888999997654

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=94.41  E-value=0.7  Score=38.44  Aligned_cols=102  Identities=15%  Similarity=0.169  Sum_probs=67.9

Q ss_pred             CCCCeEEEEcCCCc--HHHHHH--HHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCC-CCCCCCCC
Q psy7837         130 VYGSKVLDIGSGSG--YLSALF--AYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGR-RGYPDAAP  202 (299)
Q Consensus       130 ~~~~~vLDiG~G~G--~~~~~l--a~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~  202 (299)
                      ...+.++++.|+.|  ..++.|  |.+  |.+++++-.+++.+...++.+...    ...+.++|+.++.. .....-..
T Consensus        40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~----~~~~~vEfvvg~~~e~~~~~~~~  115 (218)
T PF07279_consen   40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEA----GLSDVVEFVVGEAPEEVMPGLKG  115 (218)
T ss_pred             ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhc----cccccceEEecCCHHHHHhhccC
Confidence            44578899866643  233333  332  899999999999888888887652    23455799999854 23333356


Q ss_pred             eeEEEecchhhhHHHHHHHhcc--CCcEEEEEecC
Q psy7837         203 YDVIYISQAIRDIPWHIVDQLK--LGGRMLFIKGH  235 (299)
Q Consensus       203 fD~v~~~~~~~~~~~~~~~~L~--~gG~lv~~~~~  235 (299)
                      .|+++++.-......++.+.++  +.|-+++..+.
T Consensus       116 iDF~vVDc~~~d~~~~vl~~~~~~~~GaVVV~~Na  150 (218)
T PF07279_consen  116 IDFVVVDCKREDFAARVLRAAKLSPRGAVVVCYNA  150 (218)
T ss_pred             CCEEEEeCCchhHHHHHHHHhccCCCceEEEEecc
Confidence            9999999988777755555554  45766665443

The function of this family is unknown.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=94.34  E-value=0.26  Score=41.75  Aligned_cols=45  Identities=27%  Similarity=0.217  Sum_probs=39.9

Q ss_pred             CEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          69 DKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        69 ~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+||||||.|.+...+|..-. +--.+|+|+....+..+.+.+.+
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~   94 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKE   94 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHH
Confidence            4789999999999999999875 46799999999999988888877

>KOG1253|consensus

Probab=94.21  E-value=0.052  Score=50.27  Aligned_cols=100  Identities=20%  Similarity=0.148  Sum_probs=79.6

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--C-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC----CCCCCCC
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--G-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR----GYPDAAP  202 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~  202 (299)
                      .++-+|||.=|++|.-++.++..  | .+|++-|.+++.+...++|.+.|    .....++....|+..    .......
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N----~v~~ive~~~~DA~~lM~~~~~~~~~  183 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELN----GVEDIVEPHHSDANVLMYEHPMVAKF  183 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhc----CchhhcccccchHHHHHHhccccccc
Confidence            45678999999999999988876  4 45999999999999999999885    345667777888763    1222367


Q ss_pred             eeEEEecc--hhhhHHHHHHHhccCCcEEEEEe
Q psy7837         203 YDVIYISQ--AIRDIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       203 fD~v~~~~--~~~~~~~~~~~~L~~gG~lv~~~  233 (299)
                      ||+|=+++  ....+.+.+.+.++.||.|++..
T Consensus       184 FDvIDLDPyGs~s~FLDsAvqav~~gGLL~vT~  216 (525)
T KOG1253|consen  184 FDVIDLDPYGSPSPFLDSAVQAVRDGGLLCVTC  216 (525)
T ss_pred             cceEecCCCCCccHHHHHHHHHhhcCCEEEEEe
Confidence            99998875  34567789999999999999964

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=94.11  E-value=0.14  Score=42.46  Aligned_cols=105  Identities=17%  Similarity=0.096  Sum_probs=59.3

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc---C-CeEEEEeCChHHHHHHHHHHHh-------------------cCC--------
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM---G-AKVYAIEHVKNLCKRAMKNIRR-------------------GAP--------  178 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~---~-~~v~~~D~~~~~~~~a~~~~~~-------------------~~~--------  178 (299)
                      ..+-++.|..||+|++.-.+.-.   . ..|++.|+++.+++.|++|+.-                   .++        
T Consensus        50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~  129 (246)
T PF11599_consen   50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE  129 (246)
T ss_dssp             -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred             CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence            44569999999999988766433   2 3599999999999999998721                   000        


Q ss_pred             ----------cccCCCCeEEEEcCCCCCC-----CCCCCeeEEEecchh---------------hhHHHHHHHhccCCcE
Q psy7837         179 ----------AIALAENFEFVCADGRRGY-----PDAAPYDVIYISQAI---------------RDIPWHIVDQLKLGGR  228 (299)
Q Consensus       179 ----------~~~~~~~v~~~~~d~~~~~-----~~~~~fD~v~~~~~~---------------~~~~~~~~~~L~~gG~  228 (299)
                                ..+..........|+.++.     ......|+|+.+-+.               ..+.+.+..+|-++++
T Consensus       130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV  209 (246)
T PF11599_consen  130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV  209 (246)
T ss_dssp             HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred             HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence                      0002234567777777521     122336999987653               3455788999966666


Q ss_pred             EEEEec
Q psy7837         229 MLFIKG  234 (299)
Q Consensus       229 lv~~~~  234 (299)
                      ++++..
T Consensus       210 V~v~~k  215 (246)
T PF11599_consen  210 VAVSDK  215 (246)
T ss_dssp             EEEEES
T ss_pred             EEEecC
Confidence            666433

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PLN02823 spermine synthase

Probab=94.10  E-value=0.43  Score=42.94  Aligned_cols=84  Identities=13%  Similarity=0.041  Sum_probs=55.0

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYL  145 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~  145 (299)
                      ....+||.+|+|.|..+..+.+..+ ..++..+|+++.+++.+++.+...           .....+.+ +.+=.|.|..
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~-----------~~~~~dpr-v~v~~~Da~~  168 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVN-----------REAFCDKR-LELIINDARA  168 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccc-----------cccccCCc-eEEEEChhHH
Confidence            3457999999999999987776432 358999999999999999887531           00111222 2455566654


Q ss_pred             HHHHHHcCCeEEEEeCC
Q psy7837         146 SALFAYMGAKVYAIEHV  162 (299)
Q Consensus       146 ~~~la~~~~~v~~~D~~  162 (299)
                      -+.-.....+++.+|..
T Consensus       169 ~L~~~~~~yDvIi~D~~  185 (336)
T PLN02823        169 ELEKRDEKFDVIIGDLA  185 (336)
T ss_pred             HHhhCCCCccEEEecCC
Confidence            33222224568888853

>KOG1099|consensus

Probab=93.99  E-value=0.14  Score=42.86  Aligned_cols=88  Identities=19%  Similarity=0.139  Sum_probs=63.6

Q ss_pred             CCeEEEEcCCCcHHHHHHHHc--------CC---eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC----
Q psy7837         132 GSKVLDIGSGSGYLSALFAYM--------GA---KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG----  196 (299)
Q Consensus       132 ~~~vLDiG~G~G~~~~~la~~--------~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~----  196 (299)
                      -.+++|+.+..|+++..+++.        +.   .++++|+.+-                .....+.-+++|+...    
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M----------------aPI~GV~qlq~DIT~~stae  105 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM----------------APIEGVIQLQGDITSASTAE  105 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC----------------CccCceEEeecccCCHhHHH
Confidence            468999999999999998764        22   2999998652                2346777889998852    


Q ss_pred             ----CCCCCCeeEEEecchh-----hhHHH------------HHHHhccCCcEEEEEecC
Q psy7837         197 ----YPDAAPYDVIYISQAI-----RDIPW------------HIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       197 ----~~~~~~fD~v~~~~~~-----~~~~~------------~~~~~L~~gG~lv~~~~~  235 (299)
                          .+...+.|+|++++..     |.+.+            -...+|++||.+|.-+.-
T Consensus       106 ~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifR  165 (294)
T KOG1099|consen  106 AIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFR  165 (294)
T ss_pred             HHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhc
Confidence                2334689999999863     33332            345689999999986543

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=93.80  E-value=0.25  Score=44.19  Aligned_cols=99  Identities=17%  Similarity=0.132  Sum_probs=60.2

Q ss_pred             cccCCCCeEEEEcCC-CcHHHHHHHHc-CCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCe-EEEEcCCCC--CCCCC
Q psy7837         127 GHLVYGSKVLDIGSG-SGYLSALFAYM-GAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENF-EFVCADGRR--GYPDA  200 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G-~G~~~~~la~~-~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v-~~~~~d~~~--~~~~~  200 (299)
                      ..+.++.+||-+|+| .|..+..+++. |++ |++++.+++..+.+++.         +...+ .....+...  .....
T Consensus       159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~---------ga~~~i~~~~~~~~~~~~~~~~  229 (339)
T cd08239         159 VGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL---------GADFVINSGQDDVQEIRELTSG  229 (339)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh---------CCCEEEcCCcchHHHHHHHhCC
Confidence            456779999999875 33444445543 888 99999998877776543         11111 000011000  01122


Q ss_pred             CCeeEEEecchhhhHHHHHHHhccCCcEEEEEec
Q psy7837         201 APYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       201 ~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      ..+|+++-...-........+.|+++|++++.-.
T Consensus       230 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~  263 (339)
T cd08239         230 AGADVAIECSGNTAARRLALEAVRPWGRLVLVGE  263 (339)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcC
Confidence            4699998655555555677889999999987543

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=93.75  E-value=0.14  Score=43.85  Aligned_cols=40  Identities=23%  Similarity=0.381  Sum_probs=34.0

Q ss_pred             CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Q psy7837          67 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAAR  109 (299)
Q Consensus        67 ~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~  109 (299)
                      ...++||+|+|.|..|..++..+..   |++.|.+..|..+-+
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~---v~aTE~S~~Mr~rL~  133 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKE---VYATEASPPMRWRLS  133 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcce---EEeecCCHHHHHHHH
Confidence            4568999999999999999988865   999999999965433

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=93.72  E-value=0.48  Score=42.30  Aligned_cols=99  Identities=23%  Similarity=0.243  Sum_probs=60.6

Q ss_pred             HhhhcccCCCCeEEEEcCCC-cHHHHHHHHc-CC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcC---CCCC
Q psy7837         123 INFYGHLVYGSKVLDIGSGS-GYLSALFAYM-GA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCAD---GRRG  196 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~-G~~~~~la~~-~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d---~~~~  196 (299)
                      +...... ++.+||..|+|. |..+..+++. |. .+++++.++...+.+++.         +..  .++..+   ....
T Consensus       158 l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~---------g~~--~vi~~~~~~~~~~  225 (339)
T cd08232         158 VNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM---------GAD--ETVNLARDPLAAY  225 (339)
T ss_pred             HHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc---------CCC--EEEcCCchhhhhh
Confidence            3334445 789999988764 5565556554 87 699999888877755442         111  111111   1111


Q ss_pred             CCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEe
Q psy7837         197 YPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       197 ~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~  233 (299)
                      ......+|+++-........+...+.|+++|+++...
T Consensus       226 ~~~~~~vd~vld~~g~~~~~~~~~~~L~~~G~~v~~g  262 (339)
T cd08232         226 AADKGDFDVVFEASGAPAALASALRVVRPGGTVVQVG  262 (339)
T ss_pred             hccCCCccEEEECCCCHHHHHHHHHHHhcCCEEEEEe
Confidence            1122459999875544445677889999999988754

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=93.69  E-value=0.23  Score=43.38  Aligned_cols=95  Identities=21%  Similarity=0.179  Sum_probs=59.3

Q ss_pred             cCCCCeEEEEcCC-CcHHHHHHHHc-CCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCC---CCCCCCCC
Q psy7837         129 LVYGSKVLDIGSG-SGYLSALFAYM-GAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGR---RGYPDAAP  202 (299)
Q Consensus       129 ~~~~~~vLDiG~G-~G~~~~~la~~-~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~---~~~~~~~~  202 (299)
                      ..++.+||-.|+| .|..+..+++. |.+ |+.+|.++...+.+++.         +...+ +-..+..   ........
T Consensus       118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~---------Ga~~~-i~~~~~~~~~~~~~~~~g  187 (280)
T TIGR03366       118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF---------GATAL-AEPEVLAERQGGLQNGRG  187 (280)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc---------CCcEe-cCchhhHHHHHHHhCCCC
Confidence            3578999999875 44444555544 776 99999998877776653         11110 0000100   00112245


Q ss_pred             eeEEEecchhhhHHHHHHHhccCCcEEEEEe
Q psy7837         203 YDVIYISQAIRDIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       203 fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~  233 (299)
                      +|+++-...-....+...+.|+++|++++.-
T Consensus       188 ~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G  218 (280)
T TIGR03366       188 VDVALEFSGATAAVRACLESLDVGGTAVLAG  218 (280)
T ss_pred             CCEEEECCCChHHHHHHHHHhcCCCEEEEec
Confidence            8999876555566778899999999998765

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=93.67  E-value=0.41  Score=42.96  Aligned_cols=105  Identities=19%  Similarity=0.118  Sum_probs=66.9

Q ss_pred             HhhhcccCCCCeEEEEcCC--CcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC---
Q psy7837         123 INFYGHLVYGSKVLDIGSG--SGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG---  196 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G--~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---  196 (299)
                      +.....+.++.+||-.|+.  .|.++.++++. |..++++-.+++-.+.+++.        +...-+.+...|....   
T Consensus       134 l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~l--------GAd~vi~y~~~~~~~~v~~  205 (326)
T COG0604         134 LFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKEL--------GADHVINYREEDFVEQVRE  205 (326)
T ss_pred             HHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhc--------CCCEEEcCCcccHHHHHHH
Confidence            4446678889999999955  55677778776 66777777777666655543        2222233333333221   


Q ss_pred             CCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCC
Q psy7837         197 YPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       197 ~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ......+|+|+-... .....+....|+++|+++..-...
T Consensus       206 ~t~g~gvDvv~D~vG-~~~~~~~l~~l~~~G~lv~ig~~~  244 (326)
T COG0604         206 LTGGKGVDVVLDTVG-GDTFAASLAALAPGGRLVSIGALS  244 (326)
T ss_pred             HcCCCCceEEEECCC-HHHHHHHHHHhccCCEEEEEecCC
Confidence            122246999985444 445556888999999999976654

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=93.64  E-value=0.24  Score=46.35  Aligned_cols=46  Identities=33%  Similarity=0.470  Sum_probs=33.5

Q ss_pred             CCEEEEEccCCCHHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          68 GDKVLEIGTGSGYLTTLFGAMV---GISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        68 g~~vldiG~G~G~~~~~la~~~---~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      +..|+|||||+|-+....++..   +...+|+++|.++......++.+.
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~  235 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVN  235 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHH
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHH
Confidence            4579999999999987765543   345699999999987766655543

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	299
1i1n_A	226	Human Protein L-Isoaspartate O-Methyltransferase Wi		4e-22
1r18_A	227	Drosophila Protein Isoaspartyl Methyltransferase Wi		3e-18
1dl5_A	317	Protein-L-Isoaspartate O-Methyltransferase Length =		2e-13
1jg4_A	235	Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-		3e-13
2yxe_A	215	Crystal Structure Of L-Isoaspartyl Protein Carboxyl		1e-09
3lbf_A	210	Crystal Structure Of Protein L-Isoaspartyl Methyltr		2e-09
2pbf_A	227	Crystal Structure Of A Putative Protein-L-Isoaspart		1e-07
1vbf_A	231	Crystal Structure Of Protein L-Isoaspartate O-Methy		2e-05
2yvl_A	248	Crystal Structure Of Trna (m1a58) Methyltransferase		2e-04

>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S- Adenosyl Homocysteine Length = 226

Iteration: 1
 Score =  101 bits (252), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 86/160 (53%), Gaps = 7/160 (4%)
Query: 125 FYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIA 181
            +  L  G+K LD+GSGSG L+A FA M     KV  I+H+K L   ++ N+R+  P + 
Sbjct: 71  LFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLL 130
Query: 182 LAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMT 241
            +   + V  DGR GY + APYD I++  A   +P  ++DQLK GGR++   G       
Sbjct: 131 SSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQM 190
Query: 242 LELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYN 281
           LE  DK  +GS+K   +   +Y+     L D+++ +  + 
Sbjct: 191 LEQYDKLQDGSIKMKPLMGVIYV----PLTDKEKQWSRWK 226

>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With S-Adenosyl-L- Homocysteine Length = 227

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 79/145 (54%), Gaps = 8/145 (5%)
Query: 128 HLVYGSKVLDIGSGSGYLSALF-AYMGAK-------VYAIEHVKNLCKRAMKNIRRGAPA 179
           HL  G+++LD+GSGSGYL+A F  Y+ AK       +  IEH   L +R+  N+     +
Sbjct: 81  HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS 140
Query: 180 IALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDI 239
           +  +     V  DGR+GYP  APY+ I++  A  D P  +++QL  GGR++   G +   
Sbjct: 141 MLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVGPDGGS 200
Query: 240 MTLELLDKFVNGSVKTTVIHPHVYI 264
             ++  DK  NG V+ T +   +Y+
Sbjct: 201 QYMQQYDKDANGKVEMTRLMGVMYV 225

>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase Length = 317

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 63/102 (61%), Gaps = 8/102 (7%)
Query: 132 GSKVLDIGSGSGYLSALFA-YMGAK--VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
           G +VL+IG G+GY +A+ +  +G K  V ++E+ + +C+ A +N+ R        EN  F
Sbjct: 76  GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG-----IENVIF 130
Query: 189 VCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRML 230
           VC DG  G P+ +PYDVI+++  + ++P     QLK GGR++
Sbjct: 131 VCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVI 172

>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O- Methyltransferase With S-Adenosylmethionine Length = 235

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 62/106 (58%), Gaps = 6/106 (5%)
Query: 127 GHLVYGSKVLDIGSGSGYLSALFA-YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAEN 185
            +L  G  +L++G+GSG+ +AL +  +   VY IE +  L + A +N+ R     A  +N
Sbjct: 87  ANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLER-----AGVKN 141
Query: 186 FEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLF 231
              +  DG +G+P  APYDVI ++     IP  +++QLK+GG+++ 
Sbjct: 142 VHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLII 187

>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl Methyltranferase Length = 215

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 8/107 (7%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAK---VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
           G KVL+IG+G GY +A+ A +  +   V +IE +  L ++A + +R+        +N   
Sbjct: 78  GMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG-----YDNVIV 132
Query: 189 VCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGH 235
           +  DG  GY   APYD IY + A   IP  ++ QLK GG++L   G 
Sbjct: 133 IVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVGR 179

>pdb|3LBF|A Chain A, Crystal Structure Of Protein L-Isoaspartyl Methyltransferase From Escherichia Coli Length = 210

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 120 IKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNL---CKRAMKNIRRG 176
           + R+     L   S+VL+IG+GSGY +A+ A++   V ++E +K L    +R +KN+   
Sbjct: 66  VARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLD-- 123
Query: 177 APAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHE 236
                   N      DG +G+   AP+D I ++ A  +IP  ++ QL  GG ++   G E
Sbjct: 124 ------LHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGEE 177

>pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O- Methyltransferase Beta-Aspartate Methyltransferase (Pcmt) From Plasmodium Falciparum In Complex With S-Adenosyl-L-Homocysteine Length = 227

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 11/111 (9%)
Query: 132 GSKVLDIGSGSGYLSALFAY-------MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAE 184
           GS+ +D+GSGSGYL+   A          + V  +E VK+L   +++NI+R  P +   +
Sbjct: 81  GSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKID 140
Query: 185 NFEFVCAD----GRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLF 231
           NF+ +  +          +   +D I++  +  ++P  +VD L   G+++ 
Sbjct: 141 NFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELPEILVDLLAENGKLII 191

>pdb|1VBF|A Chain A, Crystal Structure Of Protein L-Isoaspartate O-Methyltransferase Homologue From Sulfolobus Tokodaii Length = 231

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
           G KVL+IG+G GY +AL A +  KV ++E  +     A K        ++   N + +  
Sbjct: 71  GQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKXYNYASK-------LLSYYNNIKLILG 123
Query: 192 DGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGG 227
           DG  GY +  PYD + +      +     +QLK GG
Sbjct: 124 DGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGG 159

>pdb|2YVL|A Chain A, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi From Aquifex Aeolicus Length = 248

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 11/93 (11%)
Query: 133 SKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCAD 192
            +VL+ G+GSG L A+ + +  +V+  E V+   K A KN+++      L +N +F   D
Sbjct: 93  KRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKK----FNLGKNVKFFNVD 148
Query: 193 GRRGYPDAAPYDVIYISQAIRDI--PWHIVDQL 223
               + DA   + I+   A  D+  PWH ++++
Sbjct: 149 ----FKDAEVPEGIF-HAAFVDVREPWHYLEKV 176

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	299
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	4e-40
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	5e-27
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	1e-38
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	2e-24
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	2e-36
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	9e-21
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	4e-35
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	2e-22
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	2e-34
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	1e-20
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	3e-34
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	7e-24
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	5e-34
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	2e-32
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	3e-20
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	1e-13
2b25_A	336	Hypothetical protein; structural genomics, methyl	3e-13
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	9e-13
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	8e-12
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	6e-05
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	1e-11
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	4e-07
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	2e-11
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	3e-11
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	2e-05
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	6e-11
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	1e-10
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	1e-10
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	1e-10
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	1e-08
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	2e-10
3i9f_A	170	Putative type 11 methyltransferase; structural gen	2e-10
3i9f_A	170	Putative type 11 methyltransferase; structural gen	6e-06
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	6e-10
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	7e-10
3f4k_A	257	Putative methyltransferase; structural genomics, P	8e-10
3ege_A	261	Putative methyltransferase from antibiotic biosyn	9e-10
3ll7_A	410	Putative methyltransferase; methytransferase, stru	1e-09
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	2e-09
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	2e-09
1xxl_A	239	YCGJ protein; structural genomics, protein structu	3e-09
1xxl_A	239	YCGJ protein; structural genomics, protein structu	6e-04
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	3e-09
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	7e-09
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	3e-05
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	8e-09
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	5e-08
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	1e-08
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	7e-04
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	1e-08
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	2e-08
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	7e-07
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	2e-08
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	3e-08
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	5e-06
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	3e-08
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	3e-04
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	3e-08
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	1e-04
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	4e-08
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	5e-08
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	6e-08
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	6e-08
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	6e-08
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	6e-08
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	6e-08
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	8e-08
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	1e-07
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	1e-07
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	2e-07
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	3e-04
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	2e-07
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	2e-07
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	3e-05
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	2e-07
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	5e-07
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	5e-07
3lcc_A	235	Putative methyl chloride transferase; halide methy	7e-07
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	8e-07
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	6e-04
2p7i_A	250	Hypothetical protein; putative methyltransferase,	8e-07
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	9e-07
3ocj_A	305	Putative exported protein; structural genomics, PS	1e-06
3ocj_A	305	Putative exported protein; structural genomics, PS	2e-05
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	1e-06
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	2e-06
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	2e-06
3cc8_A	230	Putative methyltransferase; structural genomics, j	2e-06
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	3e-06
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	3e-06
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	4e-06
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	4e-06
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	9e-06
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	9e-06
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	9e-06
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	9e-06
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	1e-05
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	4e-04
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	1e-05
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	1e-05
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	1e-05
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	2e-05
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	2e-05
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	2e-05
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	2e-05
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	8e-04
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	2e-05
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	3e-05
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	3e-05
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	3e-05
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	2e-04
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	4e-05
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	5e-04
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	4e-05
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	4e-05
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	5e-05
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	5e-05
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	7e-05
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	8e-05
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	8e-05
3lpm_A	259	Putative methyltransferase; structural genomics, p	8e-05
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	8e-05
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	9e-05
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	9e-05
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	1e-04
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	1e-04
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	2e-04
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	2e-04
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	2e-04
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	2e-04
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	3e-04
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	3e-04
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	3e-04
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	3e-04
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	4e-04
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	4e-04
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	4e-04
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	4e-04
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	5e-04
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	5e-04
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	5e-04
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	6e-04
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	7e-04
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	8e-04
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	8e-04
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	8e-04

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* Length = 226

 Score =  138 bits (351), Expect = 4e-40
 Identities = 52/136 (38%), Positives = 75/136 (55%), Gaps = 3/136 (2%)

Query: 128 HLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAE 184
            L  G+K LD+GSGSG L+A FA M     KV  I+H+K L   ++ N+R+  P +  + 
Sbjct: 74  QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSG 133

Query: 185 NFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLEL 244
             + V  DGR GY + APYD I++  A   +P  ++DQLK GGR++   G       LE 
Sbjct: 134 RVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQ 193

Query: 245 LDKFVNGSVKTTVIHP 260
            DK  +GS+K   +  
Sbjct: 194 YDKLQDGSIKMKPLMG 209

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* Length = 226

 Score =  104 bits (261), Expect = 5e-27
 Identities = 38/96 (39%), Positives = 51/96 (53%), Gaps = 2/96 (2%)

Query: 37  DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVY 96
           D P +IG  A + +P  H   LELL   L  G K L++G+GSG LT  F  MVG +GKV 
Sbjct: 47  DSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVI 106

Query: 97  TIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYG 132
            I+HI EL++ +   V+    T +        LV G
Sbjct: 107 GIDHIKELVDDSVNNVRKDDPTLLSSGRV--QLVVG 140

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 Length = 227

 Score =  135 bits (341), Expect = 1e-38
 Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 8/141 (5%)

Query: 128 HLVYGSKVLDIGSGSGYLSALFAYM--------GAKVYAIEHVKNLCKRAMKNIRRGAPA 179
           HL  G+++LD+GSGSGYL+A F             ++  IEH   L +R+  N+     +
Sbjct: 81  HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS 140

Query: 180 IALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDI 239
           +  +     V  DGR+GYP  APY+ I++  A  D P  +++QL  GGR++   G +   
Sbjct: 141 MLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVGPDGGS 200

Query: 240 MTLELLDKFVNGSVKTTVIHP 260
             ++  DK  NG V+ T +  
Sbjct: 201 QYMQQYDKDANGKVEMTRLMG 221

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 Length = 227

 Score = 97.7 bits (244), Expect = 2e-24
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 7/101 (6%)

Query: 37  DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISG--- 93
           D P  IG    + +P  H   LE L  HLK G ++L++G+GSGYLT  F   +   G   
Sbjct: 54  DAPQPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDA 113

Query: 94  --KVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYG 132
             ++  IEH  EL+  ++  +     + +        +V G
Sbjct: 114 DTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQL--LIVEG 152

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Length = 231

 Score =  129 bits (326), Expect = 2e-36
 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 8/126 (6%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
           G KVL+IG+G GY +AL A +  KV ++E  + +   A K +           N + +  
Sbjct: 71  GQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSY-------YNNIKLILG 123

Query: 192 DGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNG 251
           DG  GY +  PYD + +      +     +QLK GG M+   G    +  L  + K  N 
Sbjct: 124 DGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIG-VGRVQKLYKVIKKGNS 182

Query: 252 SVKTTV 257
                +
Sbjct: 183 PSLENL 188

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Length = 231

 Score = 87.7 bits (218), Expect = 9e-21
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 42  IGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHI 101
           I       + +    +L+ L   L  G KVLEIGTG GY T L   +V    KV ++E  
Sbjct: 47  ILPGINTTALNLGIFMLDEL--DLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEIN 101

Query: 102 PELLEAARKRVKA 114
            ++   A K +  
Sbjct: 102 EKMYNYASKLLSY 114

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Length = 235

 Score =  125 bits (317), Expect = 4e-35
 Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 6/131 (4%)

Query: 128 HLVYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENF 186
           +L  G  +L++G+GSG+ +AL + +    VY IE +  L + A +N+ R     A  +N 
Sbjct: 88  NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLER-----AGVKNV 142

Query: 187 EFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLD 246
             +  DG +G+P  APYDVI ++     IP  +++QLK+GG+++   G       L  + 
Sbjct: 143 HVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHLWQELLEVR 202

Query: 247 KFVNGSVKTTV 257
           K  +G      
Sbjct: 203 KTKDGIKIKNH 213

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Length = 235

 Score = 92.3 bits (230), Expect = 2e-22
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 4/78 (5%)

Query: 37  DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVY 96
           D P  I     + +P    ++LE+   +LK G  +LE+GTGSG+   L   +V     VY
Sbjct: 63  DEPLPIPAGQTVSAPHMVAIMLEIA--NLKPGMNILEVGTGSGWNAALISEIVK--TDVY 118

Query: 97  TIEHIPELLEAARKRVKA 114
           TIE IPEL+E A++ ++ 
Sbjct: 119 TIERIPELVEFAKRNLER 136

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Length = 210

 Score =  123 bits (311), Expect = 2e-34
 Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 5/111 (4%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
            S+VL+IG+GSGY +A+ A++   V ++E +K L  +A + ++          N      
Sbjct: 78  QSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKN-----LDLHNVSTRHG 132

Query: 192 DGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTL 242
           DG +G+   AP+D I ++ A  +IP  ++ QL  GG ++   G E   +  
Sbjct: 133 DGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGEEHQYLKR 183

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Length = 210

 Score = 86.9 bits (216), Expect = 1e-20
 Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 37  DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVY 96
           +I   IG    +  P     + ELL   L    +VLEIGTGSGY T +   +V     V 
Sbjct: 49  NIALPIGQGQTISQPYMVARMTELL--ELTPQSRVLEIGTGSGYQTAILAHLV---QHVC 103

Query: 97  TIEHIPELLEAARKRVKA 114
           ++E I  L   AR+R+K 
Sbjct: 104 SVERIKGLQWQARRRLKN 121

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Length = 215

 Score =  123 bits (310), Expect = 3e-34
 Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 10/129 (7%)

Query: 132 GSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
           G KVL+IG+G GY +A+ A +      V +IE +  L ++A + +R+        +N   
Sbjct: 78  GMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK-----LGYDNVIV 132

Query: 189 VCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKF 248
           +  DG  GY   APYD IY + A   IP  ++ QLK GG++L   G    +  L L +K 
Sbjct: 133 IVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVG--RYLQRLVLAEKR 190

Query: 249 VNGSVKTTV 257
            +  +    
Sbjct: 191 GDEIIIKDC 199

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Length = 215

 Score = 95.7 bits (239), Expect = 7e-24
 Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 2/78 (2%)

Query: 37  DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVY 96
           D P  IG+   + +     ++ ELL   LK G KVLEIGTG GY   +   +VG  G V 
Sbjct: 49  DTPLEIGYGQTISAIHMVGMMCELL--DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVV 106

Query: 97  TIEHIPELLEAARKRVKA 114
           +IE IPEL E A + ++ 
Sbjct: 107 SIERIPELAEKAERTLRK 124

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} Length = 227

 Score =  122 bits (309), Expect = 5e-34
 Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 13/144 (9%)

Query: 128 HLVYGSKVLDIGSGSGYLSALFAYM-------GAKVYAIEHVKNLCKRAMKNIRRGAPAI 180
            L  GS+ +D+GSGSGYL+   A          + V  +E VK+L   +++NI+R  P +
Sbjct: 77  VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPEL 136

Query: 181 ALAENFEFVCAD----GRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHE 236
              +NF+ +  +          +   +D I++  +  ++P  +VD L   G+++     E
Sbjct: 137 LKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELPEILVDLLAENGKLIIPIE-E 195

Query: 237 DDIMTLELLDKFVNGSVKTTVIHP 260
           D    L  + K  NG +    +  
Sbjct: 196 DYTQVLYEITK-KNGKIIKDRLFD 218

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317

 Score =  121 bits (305), Expect = 2e-32
 Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 8/132 (6%)

Query: 132 GSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
           G +VL+IG G+GY +A+ + +      V ++E+ + +C+ A +N+ R        EN  F
Sbjct: 76  GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER-----LGIENVIF 130

Query: 189 VCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKF 248
           VC DG  G P+ +PYDVI+++  + ++P     QLK GGR++     +        L K 
Sbjct: 131 VCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKK 190

Query: 249 VNGSVKTTVIHP 260
            +  +       
Sbjct: 191 KDPYLVGNYKLE 202

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317

 Score = 87.9 bits (218), Expect = 3e-20
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 36  LDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKV 95
           L    +    +    PS   L +E +   L  G +VLEIG G+GY   +   +VG  G V
Sbjct: 46  LVSYDDGEEYSTSSQPSLMALFMEWV--GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLV 103

Query: 96  YTIEHIPELLEAARKRVKA 114
            ++E+  ++ E A++ V+ 
Sbjct: 104 VSVEYSRKICEIAKRNVER 122

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 67.4 bits (165), Expect = 1e-13
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 7/101 (6%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
               +D+G G+G ++   A    +VYAI+           N++R      L +N   +  
Sbjct: 34  NDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQR----HGLGDNVTLMEG 89

Query: 192 DGRRGYPDAAPYDVIYI---SQAIRDIPWHIVDQLKLGGRM 229
           D           D+  +      +++I   I D+LK GGR+
Sbjct: 90  DAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRI 130

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336

 Score = 68.3 bits (166), Expect = 3e-13
 Identities = 29/142 (20%), Positives = 51/142 (35%), Gaps = 13/142 (9%)

Query: 34  TLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISG 93
            L D    +     +  P D  ++L ++  +   GD VLE G+GSG ++      VG  G
Sbjct: 74  ALEDYVVLMKRGTAITFPKDINMILSMMDIN--PGDTVLEAGSGSGGMSLFLSKAVGSQG 131

Query: 94  KVYTIEHIPELLEAARKRVKA--------KAETYIKRINFYGHLVYGSKVLDIGSGSGYL 145
           +V + E   +  + A+K  K           E +   ++F    + G+        S   
Sbjct: 132 RVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE---DIKSLTF 188

Query: 146 SALFAYMGAKVYAIEHVKNLCK 167
            A+   M      +       K
Sbjct: 189 DAVALDMLNPHVTLPVFYPHLK 210

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277

 Score = 66.2 bits (161), Expect = 9e-13
 Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 10/136 (7%)

Query: 33  LTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGIS 92
            +L+D   N+     +  P D   +  +L   +K GD++++ G GSG +  +    VG S
Sbjct: 80  PSLIDEIMNMKRRTQIVYPKDSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSS 137

Query: 93  GKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM 152
           GKV+  E   E  + A           + +      +    + +  G     + ALF  +
Sbjct: 138 GKVFAYEKREEFAKLAES--------NLTKWGLIERVTIKVRDISEGFDEKDVDALFLDV 189

Query: 153 GAKVYAIEHVKNLCKR 168
                 I+      K 
Sbjct: 190 PDPWNYIDKCWEALKG 205

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 62.7 bits (152), Expect = 8e-12
 Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 12/108 (11%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
            ++VL+ G G G  +A F    A+  A +    L K A    R  AP        +    
Sbjct: 49  QTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLA----RANAPHA------DVYEW 98

Query: 192 DGRRG--YPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHED 237
           +G+        AP+ +I   +    +   + +        L++    +
Sbjct: 99  NGKGELPAGLGAPFGLIVSRRGPTSVILRLPELAAPDAHFLYVGPRLN 146

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 42.3 bits (99), Expect = 6e-05
 Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 3/68 (4%)

Query: 45  NAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPEL 104
              +  P         LS  L    +VLE G G G     FG       +    +  PEL
Sbjct: 26  ARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPEL 82

Query: 105 LEAARKRV 112
           L+ AR   
Sbjct: 83  LKLARANA 90

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 63.3 bits (153), Expect = 1e-11
 Identities = 22/141 (15%), Positives = 49/141 (34%), Gaps = 13/141 (9%)

Query: 127 GHLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAE 184
           G    G + + IG G   L+ +      G +V  +E   ++ + + K I          +
Sbjct: 118 GRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEG-----LGVD 172

Query: 185 NFEFVCADGRRGYPDAAPYDVIYISQAIRD---IPWHIVDQLKLGGRMLFIKGHE-DDIM 240
               +  D      D   +DV+ ++        +  +I   +    R+++        I+
Sbjct: 173 GVNVITGDETV--IDGLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTYTGMRAIL 230

Query: 241 TLELLDKFVNGSVKTTVIHPH 261
              + D  + G  +  V+ P 
Sbjct: 231 YAPVSDDDITGFRRAGVVLPS 251

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 49.4 bits (117), Expect = 4e-07
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 37  DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVY 96
           D P     + +        L  E   G  + G++ + IG G   LT +  + V    +V 
Sbjct: 92  DSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVY-GMRVN 150

Query: 97  TIEHIPELLEAARKRVKA 114
            +E  P++ E +RK ++ 
Sbjct: 151 VVEIEPDIAELSRKVIEG 168

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 62.3 bits (151), Expect = 2e-11
 Identities = 25/176 (14%), Positives = 53/176 (30%), Gaps = 24/176 (13%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
               L++G G+G ++      G +  A++    + +      R+      +    + V A
Sbjct: 40  EPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVF----RQKIA--GVDRKVQVVQA 93

Query: 192 DGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQ----------LKLGGRMLFIKGHEDDIM 240
           D R    PD +    + +          + D           LK GG +L      +   
Sbjct: 94  DARAIPLPDES-VHGVIVVHLW----HLVPDWPKVLAEAIRVLKPGGALLEGWDQAEASP 148

Query: 241 TLELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYNTPPPQMDLFDGLTPR 296
              L +++   +       P       K L++ +         P   ++      R
Sbjct: 149 EWTLQERWR--AFAAEEGFPVERGLHAKRLKEVEEALRRLGLKPRTREVARWREER 202

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 61.4 bits (149), Expect = 3e-11
 Identities = 25/209 (11%), Positives = 58/209 (27%), Gaps = 33/209 (15%)

Query: 94  KVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMG 153
           + +           +R  +    E Y+K+          ++VLD+G G GY +   +  G
Sbjct: 25  EFWNQNSQEMWDSGSRSTIIPFFEQYVKK---------EAEVLDVGCGDGYGTYKLSRTG 75

Query: 154 AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR-GYPDAAPYDVIYISQAI 212
            K   ++  + + ++  +             +  F+  D     + +   ++ I    ++
Sbjct: 76  YKAVGVDISEVMIQKGKER--------GEGPDLSFIKGDLSSLPFENEQ-FEAIMAINSL 126

Query: 213 RDIP--------WHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYI 264
                          V  LK  G                   +     V    + P  + 
Sbjct: 127 EWTEEPLRALNEIKRV--LKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFE 184

Query: 265 HELK----SLEDQKRMFHYYNTPPPQMDL 289
             +K     + D   ++           L
Sbjct: 185 QLVKEQGFKVVDGIGVYKRGVNEKMLGQL 213

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 13/78 (16%), Positives = 32/78 (41%), Gaps = 3/78 (3%)

Query: 44  HNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPE 103
           ++  M        ++     ++K   +VL++G G GY T           K   ++    
Sbjct: 30  NSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTG---YKAVGVDISEV 86

Query: 104 LLEAARKRVKAKAETYIK 121
           +++  ++R +    ++IK
Sbjct: 87  MIQKGKERGEGPDLSFIK 104

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255

 Score = 60.8 bits (147), Expect = 6e-11
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 10/135 (7%)

Query: 34  TLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISG 93
            ++D    +     +  P D  L++      +  GD ++E G GSG LT     +VG  G
Sbjct: 62  RIVDYLDKMKRGPQIVHPKDAALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEG 119

Query: 94  KVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMG 153
           +V + E   +  + A + +K     +  R+      +Y       G     +  +   + 
Sbjct: 120 RVVSYEIREDFAKLAWENIKWA--GFDDRVTIKLKDIY------EGIEEENVDHVILDLP 171

Query: 154 AKVYAIEHVKNLCKR 168
                +EH     K 
Sbjct: 172 QPERVVEHAAKALKP 186

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 60.2 bits (146), Expect = 1e-10
 Identities = 30/176 (17%), Positives = 51/176 (28%), Gaps = 21/176 (11%)

Query: 106 EAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFA-YMGAKVYAIEHVKN 164
           +  R+      E     +   G L   +K LD+G+G G  +       G  +  +     
Sbjct: 57  DEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPV 116

Query: 165 LCKRAMKNIRRGAPAIALAENFEFVCADGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQ- 222
             KR             LA+N              D + YD I+   A      H  D+ 
Sbjct: 117 QNKRN----EEYNNQAGLADNITVKYGSFLEIPCEDNS-YDFIWSQDAFL----HSPDKL 167

Query: 223 ---------LKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKS 269
                    LK  G M      ++D +    +   ++      +    +Y    K 
Sbjct: 168 KVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKE 223

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Length = 258

 Score = 59.7 bits (144), Expect = 1e-10
 Identities = 33/154 (21%), Positives = 54/154 (35%), Gaps = 15/154 (9%)

Query: 14  IPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLE 73
           +  ++G    +  P      TL +   ++  +A    P D   ++ LL      G +VLE
Sbjct: 51  VRTHLGEELSVHRP------TLEEYLLHMKRSATPTYPKDASAMVTLLDLA--PGMRVLE 102

Query: 74  IGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGS 133
            GTGSG LT      VG  G V + E  P  L  A + V+A  +             +  
Sbjct: 103 AGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVEN-------VRFHLG 155

Query: 134 KVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCK 167
           K+ +          +   +      +E      K
Sbjct: 156 KLEEAELEEAAYDGVALDLMEPWKVLEKAALALK 189

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Length = 248

 Score = 59.6 bits (144), Expect = 1e-10
 Identities = 38/219 (17%), Positives = 75/219 (34%), Gaps = 40/219 (18%)

Query: 63  GHLKYGDKVLEIGTGSGYLTTL---------FGA-----MVGIS--GKVYTIEH----IP 102
              K G+ VL       +L  L                 ++G     K+   E     + 
Sbjct: 2   NSFKEGEYVLIRFGEKKFLRKLLPKQSLSVKKSVLKFDEVIGKPEGVKINGFEVYRPTLE 61

Query: 103 ELLEAARKRVKAKAETY-IKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEH 161
           E++    +R            I    +L    +VL+ G+GSG L A+ + +  +V+  E 
Sbjct: 62  EIILLGFERKTQIIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEA 121

Query: 162 VKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS-QAIRDIPWHIV 220
           V+   K A KN+++      L +N +F   D +        +   ++  +        + 
Sbjct: 122 VEEFYKTAQKNLKK----FNLGKNVKFFNVDFKDAEVPEGIFHAAFVDVREPWHYLEKVH 177

Query: 221 DQLKLGGRMLF--------------IKGHEDDIMTLELL 245
             L  G  + F              I+ +  ++  +E+L
Sbjct: 178 KSLMEGAPVGFLLPTANQVIKLLESIENYFGNLEVVEIL 216

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Length = 248

 Score = 53.8 bits (129), Expect = 1e-08
 Identities = 27/139 (19%), Positives = 44/139 (31%), Gaps = 16/139 (11%)

Query: 37  DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVY 96
            I         +  P D   +   L  +L    +VLE GTGSG L  +   +    G+V+
Sbjct: 63  IILLGFERKTQIIYPKDSFYIALKL--NLNKEKRVLEFGTGSGALLAVLSEVA---GEVW 117

Query: 97  TIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKV 156
           T E + E  + A+K +K           F          +D          +F      V
Sbjct: 118 TFEAVEEFYKTAQKNLK----------KFNLGKNVKFFNVDFKDA-EVPEGIFHAAFVDV 166

Query: 157 YAIEHVKNLCKRAMKNIRR 175
               H      +++     
Sbjct: 167 REPWHYLEKVHKSLMEGAP 185

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 59.8 bits (145), Expect = 2e-10
 Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 17/106 (16%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
           G  +LD+G G+G L+   A  GA+V   ++   + ++A    R+  P +       F  A
Sbjct: 58  GEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKA----RQNYPHL------HFDVA 107

Query: 192 DGRRGYPDAAPYDVIYISQAIRDIP------WHIVDQLKLGGRMLF 231
           D R  +    P D ++ +  +  +         I   LK GGR + 
Sbjct: 108 DARN-FRVDKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVA 152

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 28/151 (18%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
              ++D G G+G+          K+Y I+      K   +        I L++  E    
Sbjct: 18  KGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDS---VITLSDPKEI--- 71

Query: 192 DGRRGYPDAAPYDVIYISQAIRDIP------WHIVDQLKLGGRMLFI--KGHEDDI---- 239
                 PD +  D I  + +  D+         +   LK  GR++ I  +     I    
Sbjct: 72  ------PDNS-VDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPL 124

Query: 240 ---MTLELLDKFVNGSVKTTVIHPHVYIHEL 267
              M  +    + +  V     +P  Y   L
Sbjct: 125 SIRMDEKDYMGWFSNFVVEKRFNPTPYHFGL 155

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 8/66 (12%)

Query: 48  MESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEA 107
           +E P +    L  +         +++ G G+G+             K+Y I+     L+ 
Sbjct: 3   LERPEE---YLPNI--FEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKE 54

Query: 108 ARKRVK 113
            +++  
Sbjct: 55  VKEKFD 60

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 57.2 bits (138), Expect = 6e-10
 Identities = 27/177 (15%), Positives = 51/177 (28%), Gaps = 37/177 (20%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
              VL+ G G+G L+      G  VY IE  + +   A +          L + F     
Sbjct: 46  FGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEK---------LPKEFSITEG 96

Query: 192 DGRRGYPDAAPYDVIYISQAIRDIPWHIVDQ------------LKLGGRMLFIKGHEDDI 239
           D    +      D I  + A      H+ D             L  GG+++F      D 
Sbjct: 97  DFLS-FEVPTSIDTIVSTYAF----HHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQ 151

Query: 240 MTLELLDKFVNGSVKTTV---IHPHVY--IHELKSL------EDQKRMFHYYNTPPP 285
              +   +         +   +    Y  I  ++++             +++     
Sbjct: 152 DAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRLNHFVWVME 208

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275

 Score = 57.4 bits (138), Expect = 7e-10
 Identities = 20/135 (14%), Positives = 47/135 (34%), Gaps = 10/135 (7%)

Query: 33  LTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGIS 92
            + +     I  N  + S  D   ++      L+ G  +LE+G GSG +++     +   
Sbjct: 78  FSPMYFGRVIRRNTQIISEIDASYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGK 135

Query: 93  GKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM 152
           G +  +E   + L+ A   +              G++      +          A+ A +
Sbjct: 136 GTLTVVERDEDNLKKAMDNL--------SEFYDIGNVRTSRSDIADFISDQMYDAVIADI 187

Query: 153 GAKVYAIEHVKNLCK 167
                 ++ + ++ K
Sbjct: 188 PDPWNHVQKIASMMK 202

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 57.2 bits (138), Expect = 8e-10
 Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 20/126 (15%)

Query: 117 ETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFA-YMGAKVYAIEHVKNLCKRAMKNIRR 175
           E   K ++F   L   +K+ DIG G+G  +   A Y+  ++  I+   +  +        
Sbjct: 32  EATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIF----NE 87

Query: 176 GAPAIALAENFEFVCADGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQ---------LKL 225
            A     A+  + +        + +    D+I+   AI    ++I  +         LK 
Sbjct: 88  NAVKANCADRVKGITGSMDNLPFQNEE-LDLIWSEGAI----YNIGFERGMNEWSKYLKK 142

Query: 226 GGRMLF 231
           GG +  
Sbjct: 143 GGFIAV 148

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 57.2 bits (138), Expect = 9e-10
 Identities = 25/117 (21%), Positives = 36/117 (30%), Gaps = 27/117 (23%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
           GS + DIG+G+G  S   A  G  VYA+E         M+      P        E+   
Sbjct: 35  GSVIADIGAGTGGYSVALANQGLFVYAVEPS-----IVMRQQAVVHP------QVEWFTG 83

Query: 192 DGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQ----------LKLGGRMLFIKGHED 237
                  PD +  D +    AI     H              ++ G  +L       
Sbjct: 84  YAENLALPDKS-VDGVISILAI----HHFSHLEKSFQEMQRIIRDGTIVLLTFDIRL 135

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410

 Score = 57.5 bits (138), Expect = 1e-09
 Identities = 22/140 (15%), Positives = 40/140 (28%), Gaps = 27/140 (19%)

Query: 99  EHIPELLE--AARKRVKAKAETYIKRINFY--------------------GHLVYGSKVL 136
           E+   +        R++ K   +    + Y                      +  G+KV+
Sbjct: 39  EYRAAVATQIELWPRLRNKLPQWAGISSLYIPSRLSLEQSSGAVTSSYKSRFIREGTKVV 98

Query: 137 DIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG 196
           D+  G G          ++   IE        A  NI      +   ++   +  D +  
Sbjct: 99  DLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPL---LLNEGKDVNILTGDFKEY 155

Query: 197 YP--DAAPYDVIYISQAIRD 214
            P       D IY+  A R 
Sbjct: 156 LPLIKTFHPDYIYVDPARRS 175

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 56.1 bits (135), Expect = 2e-09
 Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 16/113 (14%)

Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFE 187
           ++    KVLD+  G G  S L    G +V  ++  +++ ++A +  +     +      E
Sbjct: 35  YMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNV------E 88

Query: 188 FVCADGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQ--------LKLGGRMLF 231
           F+  D R+  + D   +D +    +I       ++Q        LK  G+ + 
Sbjct: 89  FIVGDARKLSFEDKT-FDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIM 140

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 5/103 (4%)

Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFE 187
               G  + DIG GSG +S  +   G +   IE   +  +   KNI        L+    
Sbjct: 52  APRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDT----YGLSPRMR 107

Query: 188 FVCADGRRGYPDAAPYDVIYI-SQAIRDIPWHIVDQLKLGGRM 229
            V         D    + ++I     + +   + + L  G R+
Sbjct: 108 AVQGTAPAALADLPLPEAVFIGGGGSQALYDRLWEWLAPGTRI 150

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 55.6 bits (134), Expect = 3e-09
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 21/112 (18%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
             +VLDIG+G+G+ +  F+    +   ++  K + + A    +         EN  F   
Sbjct: 22  EHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKG-----VENVRFQQG 76

Query: 192 DGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQ----------LKLGGRMLFI 232
                 +PD + +D+I    A      H  D           LK  GR L +
Sbjct: 77  TAESLPFPDDS-FDIITCRYAAH----HFSDVRKAVREVARVLKQDGRFLLV 123

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 68  GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 115
             +VL+IG G+G+    F   V    +   ++   E++E A    + K
Sbjct: 22  EHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEK 66

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 54.9 bits (132), Expect = 3e-09
 Identities = 25/174 (14%), Positives = 54/174 (31%), Gaps = 37/174 (21%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
              VL++ SG+GY +   + +  +V A++    +   A    R G   +      EF   
Sbjct: 47  RGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAG---RHGLDNV------EFRQQ 97

Query: 192 DGRRGYPDAAPYDVIYISQAIRDIPWHIVDQ------------LKLGGRMLFIKGHEDDI 239
           D    +     +D ++ +  +     H+ D             +  GG + F+   + + 
Sbjct: 98  DLFD-WTPDRQWDAVFFAHWL----AHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHE- 151

Query: 240 MTLELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYNTPPPQMDLFDGL 293
                         +     P V +          R+   + +P    +    L
Sbjct: 152 ----------RRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTAL 195

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 53.8 bits (129), Expect = 7e-09
 Identities = 12/55 (21%), Positives = 28/55 (50%)

Query: 59  ELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113
           + +   +K GD V++   G+G  T    ++VG +G+V+  +   + +    K++ 
Sbjct: 14  DYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLT 68

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 19/139 (13%), Positives = 43/139 (30%), Gaps = 25/139 (17%)

Query: 132 GSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
           G  V+D   G+G  +A  A +     +V+  +          K +      + L +    
Sbjct: 23  GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTD----LNLIDRVTL 78

Query: 189 VCADGRRGYP------DAAPYDVIYISQAIRDIPWH----------IVDQLKLGGRMLFI 232
           +    +           A  +++ Y+      I              ++ L  GG +  +
Sbjct: 79  IKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVV 138

Query: 233 --KGHEDDIMTLELLDKFV 249
              G +      E + +F+
Sbjct: 139 IYYGGDTGFEEKEKVLEFL 157

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 53.9 bits (130), Expect = 8e-09
 Identities = 20/52 (38%), Positives = 29/52 (55%)

Query: 64  HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 115
            LK G  VL++GTG+G+       MVG  GKVY I+   E++  A ++V   
Sbjct: 34  GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKL 85

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 51.6 bits (124), Expect = 5e-08
 Identities = 28/150 (18%), Positives = 57/150 (38%), Gaps = 21/150 (14%)

Query: 93  GKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM 152
              +    I +L + +R  +    E  +K       L  G  VLD+G+G+G+     + M
Sbjct: 4   AHKFDPSKIKKLDDPSRLEL-FDPEKVLKEFG----LKEGMTVLDVGTGAGFYLPYLSKM 58

Query: 153 ---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR-GYPDAAPYDVIYI 208
                KVYAI+  + +   A + + +        +N E + ++  +   PD    D I++
Sbjct: 59  VGEKGKVYAIDVQEEMVNYAWEKVNKLG-----LKNVEVLKSEENKIPLPDNT-VDFIFM 112

Query: 209 SQAIRDIP------WHIVDQLKLGGRMLFI 232
           +    ++         +    K    +  I
Sbjct: 113 AFTFHELSEPLKFLEELKRVAKPFAYLAII 142

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 54.1 bits (130), Expect = 1e-08
 Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 20/126 (15%)

Query: 117 ETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFA-YMGAKVYAIEHVKNLCKRAMKNIRR 175
           E  +K ++F  +L   S + DIG G+G  + + A ++  +V  ++ +            R
Sbjct: 32  EVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIF----NR 87

Query: 176 GAPAIALAENFEFVCADGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQ---------LKL 225
            A    L      +        + +    D+I+   AI    ++I  +         LK 
Sbjct: 88  NARQSGLQNRVTGIVGSMDDLPFRNEE-LDLIWSEGAI----YNIGFERGLNEWRKYLKK 142

Query: 226 GGRMLF 231
           GG +  
Sbjct: 143 GGYLAV 148

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 39.5 bits (92), Expect = 7e-04
 Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 24  MESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLS--GHLKYGDKVLEIGTGSGYL 81
           M + +       L++  +   N   + P    + L+ LS   +L     + +IG G+G  
Sbjct: 1   MSNENKTIHDFELNLICDFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQ 60

Query: 82  TTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 115
           T +    V   G+V  ++ +   ++   +  +  
Sbjct: 61  TMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQS 92

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 16/111 (14%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
             +VLD+G G G+L    A  G +   ++  + L   A    R             +   
Sbjct: 53  PERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAA----RAAGA--GEVHLASYAQL 106

Query: 192 DGRRGYPDAAPYDVIYISQAI--RDIP-----WHIVDQLKLGGRMLFIKGH 235
              +  P    YD+I  + A+  +DI         +  L  GG ++    H
Sbjct: 107 AEAK-VPVGKDYDLICANFALLHQDIIELLSAMRTL--LVPGGALVIQTLH 154

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 53.9 bits (129), Expect = 2e-08
 Identities = 25/135 (18%), Positives = 48/135 (35%), Gaps = 28/135 (20%)

Query: 132 GSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAI---ALAEN 185
           G+ VLD+G G+G    L + +     KV  ++ + N  + A K +   A          N
Sbjct: 84  GATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSN 143

Query: 186 FEFVCAD-------GRRGYPDAAPYDVIYISQAIRDIPWHIVDQ----------LKLGGR 228
             F+             G PD++  D++  +           ++          L+ GG 
Sbjct: 144 VRFLKGFIENLATAEPEGVPDSS-VDIVISNCVCN----LSTNKLALFKEIHRVLRDGGE 198

Query: 229 MLFIKGHEDDIMTLE 243
           + F   + D  ++  
Sbjct: 199 LYFSDVYADRRLSEA 213

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 49.3 bits (117), Expect = 7e-07
 Identities = 20/58 (34%), Positives = 29/58 (50%)

Query: 65  LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKR 122
              G  VL++G G+G    L   +VG  GKV  ++ +   LE ARK V+  AE +   
Sbjct: 81  SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGS 138

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280

 Score = 53.2 bits (127), Expect = 2e-08
 Identities = 31/135 (22%), Positives = 49/135 (36%), Gaps = 7/135 (5%)

Query: 34  TLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISG 93
            L+D   ++     +  P D   ++      +  G +VLE G GSG LT      VG +G
Sbjct: 68  LLVDYVMSMPRGPQVIYPKDAAQIVHEG--DIFPGARVLEAGAGSGALTLSLLRAVGPAG 125

Query: 94  KVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMG 153
           +V + E   +  E AR+ V         +      LV    + D     G +      M 
Sbjct: 126 QVISYEQRADHAEHARRNV----SGCYGQPPDNWRLVVS-DLADSELPDGSVDRAVLDML 180

Query: 154 AKVYAIEHVKNLCKR 168
           A    ++ V  L   
Sbjct: 181 APWEVLDAVSRLLVA 195

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 53.0 bits (127), Expect = 3e-08
 Identities = 30/138 (21%), Positives = 59/138 (42%), Gaps = 19/138 (13%)

Query: 106 EAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVK 163
           E    R+  +AET  K ++       G+KVL+ G G G  + + A     A++ +I+   
Sbjct: 12  EREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISP 71

Query: 164 NLCKRAMKNIRRGAPAIALAENFEFVCADGRR-GYPDAAPYDVIYISQAIRDIP------ 216
              ++A +N  +        +N +F+ A+     + D++ +D I++   +  +       
Sbjct: 72  ESLEKARENTEK-----NGIKNVKFLQANIFSLPFEDSS-FDHIFVCFVLEHLQSPEEAL 125

Query: 217 --WHIVDQLKLGGRMLFI 232
                V  LK GG +  I
Sbjct: 126 KSLKKV--LKPGGTITVI 141

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 46.1 bits (109), Expect = 5e-06
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 64  HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 115
               G KVLE G G G  T +  A      ++ +I+  PE LE AR+  +  
Sbjct: 34  VYPPGAKVLEAGCGIGAQTVIL-AKNNPDAEITSIDISPESLEKARENTEKN 84

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 52.1 bits (125), Expect = 3e-08
 Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 17/129 (13%)

Query: 132 GSKVLDIGSGSGYLSALFA-YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVC 190
               +DIGSG G LS   A      + A++  K++ + A+KNI        L +  + V 
Sbjct: 44  AGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADA----NLNDRIQIVQ 99

Query: 191 ADGRR-GYPDAAPYDVIYISQAIRDIP--------WHIVDQLKLGGRMLFIKGHEDDIMT 241
            D       D    D+I    ++             + +  LK GG+     G  +  + 
Sbjct: 100 GDVHNIPIEDNY-ADLIVSRGSVFFWEDVATAFREIYRI--LKSGGKTYIGGGFGNKELR 156

Query: 242 LELLDKFVN 250
             +  + + 
Sbjct: 157 DSISAEMIR 165

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 4/58 (6%)

Query: 68  GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINF 125
               ++IG+G G L+            +  ++    + E A K           RI  
Sbjct: 44  AGTCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALK--NIADANLNDRIQI 97

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230

 Score = 52.2 bits (125), Expect = 3e-08
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 7/107 (6%)

Query: 121 KRINFYGHLV-YGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGA 177
           KR+    + V  G+++LD+GS   YL      MG      A E V    + A+KN+    
Sbjct: 10  KRLQKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSE-- 67

Query: 178 PAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLK 224
               L    +   A+G   + +A   D I I      +   I++   
Sbjct: 68  --HGLTSKIDVRLANGLSAFEEADNIDTITICGMGGRLIADILNNDI 112

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 58  LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114
           L+ ++ ++  G ++L++G+   YL  +F   +G        E +    ++A K V  
Sbjct: 12  LQKVANYVPKGARLLDVGSDHAYL-PIFLLQMGYCDFAIAGEVVNGPYQSALKNVSE 67

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 51.7 bits (124), Expect = 4e-08
 Identities = 17/108 (15%), Positives = 38/108 (35%), Gaps = 18/108 (16%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
              +LD+GSG+G  +   A +G ++  +E    L + A    R+  P++       F   
Sbjct: 42  DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELA----RQTHPSV------TFHHG 91

Query: 192 DGRRGYPDAAPYDVIYISQAIRDIPWH--------IVDQLKLGGRMLF 231
                      +  +    ++  +           +   ++ GG +L 
Sbjct: 92  TITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLM 139

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 52.3 bits (125), Expect = 5e-08
 Identities = 29/140 (20%), Positives = 49/140 (35%), Gaps = 26/140 (18%)

Query: 123 INFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPA 179
           +N    +     ++D G G GYL  +   +   G+K   I+  + L   A +  R     
Sbjct: 14  VNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL---- 69

Query: 180 IALAENFEFVCADGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQ----------LKLGGR 228
             L  + EF+  D       D   YD+      +     H+             +K GG+
Sbjct: 70  --LPYDSEFLEGDATEIELNDK--YDIAICHAFL----LHMTTPETMLQKMIHSVKKGGK 121

Query: 229 MLFIKGHEDDIMTLELLDKF 248
           ++  + H    M   LLD  
Sbjct: 122 IICFEPHWISNMASYLLDGE 141

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 51.9 bits (124), Expect = 6e-08
 Identities = 13/62 (20%), Positives = 24/62 (38%)

Query: 53  DHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV 112
           D+   L      +     +++ G G GYL  +   ++    K   I+    LL  AR+  
Sbjct: 8   DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELF 67

Query: 113 KA 114
           + 
Sbjct: 68  RL 69

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 52.1 bits (125), Expect = 6e-08
 Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 24/153 (15%)

Query: 132 GSKVLDIGSGSGYLSALFA-YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVC 190
           G +VLD+G G G  +   A     +V  I   +    +A       A A  LA    F  
Sbjct: 62  GDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQA----NARATAAGLANRVTFSY 117

Query: 191 ADGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQ----------LKLGGRMLF---IKGHE 236
           AD     + D A +D ++  +++     H+ D+          L+ GG +     +    
Sbjct: 118 ADAMDLPFED-ASFDAVWALESLH----HMPDRGRALREMARVLRPGGTVAIADFVLLAP 172

Query: 237 DDIMTLELLDKFVNGSVKTTVIHPHVYIHELKS 269
            +    E +D F  G    ++     Y  +++ 
Sbjct: 173 VEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQ 205

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 51.7 bits (124), Expect = 6e-08
 Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 21/112 (18%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
             +VLD+ +G G+++  FA    KV A +  +++ K A   I          +  E+V  
Sbjct: 38  NEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNG-----HQQVEYVQG 92

Query: 192 DGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQ----------LKLGGRMLFI 232
           D  +  + D   + ++    A      H  +           LK GG++L +
Sbjct: 93  DAEQMPFTDER-FHIVTCRIAAH----HFPNPASFVSEAYRVLKKGGQLLLV 139

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183

 Score = 50.7 bits (122), Expect = 6e-08
 Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 12/101 (11%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRR-GAPAIALAENFEFVC 190
              V+D+G GSG ++   A     VYAI+++    +   +N+ +          N + + 
Sbjct: 36  DDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIK------NCQIIK 89

Query: 191 ADGRRGYPDAAPYDVIYI--SQAIRDIPWHIVDQLKLGGRM 229
                        +  +I  ++ I  I   +    K    +
Sbjct: 90  GRAEDVLDKLEF-NKAFIGGTKNIEKIIEIL--DKKKINHI 127

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204

 Score = 51.1 bits (122), Expect = 6e-08
 Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 10/103 (9%)

Query: 132 GSKVLDIGSGSGYLS--ALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
              + DIG+GS  +S  A       +++A+E           N+++      +A N   V
Sbjct: 41  DLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKK-----FVARNVTLV 95

Query: 190 CADGRRGYPDAAPYDVIYIS---QAIRDIPWHIVDQLKLGGRM 229
            A    G  D    D ++I      + +I   +  +LK  G +
Sbjct: 96  EAFAPEGLDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVI 138

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 50.9 bits (122), Expect = 8e-08
 Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 15/113 (13%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
             ++LDIG GSG +S   A  G  V  I+      + A    R            EF   
Sbjct: 31  DDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVE 90

Query: 192 DGRR-GYPDAAPYDVIYISQAIRDIP-----------WHIVDQLKLGGRMLFI 232
           +     + D++ +D   +   +  +P              V  LK G  +  +
Sbjct: 91  NASSLSFHDSS-FDFAVMQAFLTSVPDPKERSRIIKEVFRV--LKPGAYLYLV 140

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 18/110 (16%)

Query: 132 GSKVLDIGSGSGYLSALFA--YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
              +LD+G+G+G LSA     Y  A    ++  + + + A    R            +++
Sbjct: 45  NPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL-------KVKYI 97

Query: 190 CADGRRGYPDAAPYDVIYISQAIRDIPW--------HIVDQLKLGGRMLF 231
            AD  + Y     YD++  + +I  +               LK  G  + 
Sbjct: 98  EADYSK-YDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFIN 146

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 50.3 bits (120), Expect = 1e-07
 Identities = 33/194 (17%), Positives = 57/194 (29%), Gaps = 41/194 (21%)

Query: 116 AETYIKR-INFYGHLVYGSKVLDIGSGSGYLS-ALFAYMGAKVYAIEHVKNLCKRAMKNI 173
            +  + R + +         VLD G+G      ++F   G K Y IE      K+A    
Sbjct: 7   RQPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFS 66

Query: 174 RRGAPAIALAENFEFVCADGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQ---------- 222
           R     +           D R+  + D +    +Y    I    +H+             
Sbjct: 67  RENNFKL------NISKGDIRKLPFKDES-MSFVYSYGTI----FHMRKNDVKEAIDEIK 115

Query: 223 --LKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYY 280
             LK GG          D       +++  G          +   E   LE  +++ H Y
Sbjct: 116 RVLKPGGLACINFLTTKD-------ERYNKGE--------KIGEGEFLQLERGEKVIHSY 160

Query: 281 NTPPPQMDLFDGLT 294
            +       F  + 
Sbjct: 161 VSLEEADKYFKDMK 174

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 24/134 (17%), Positives = 39/134 (29%), Gaps = 11/134 (8%)

Query: 121 KRINFYGHLV-YGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGA 177
           KR+      +    ++ DIGS   YL          +   A E V    + A K +R   
Sbjct: 10  KRLEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRS-- 67

Query: 178 PAIALAENFEFVCADGRRGYPDAAPYDVIYIS----QAIRDIPWHIVDQLKLGGRMLFIK 233
               L E  +    +G          D I I+      IR I      +L    +++   
Sbjct: 68  --SGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLILQP 125

Query: 234 GHEDDIMTLELLDK 247
                 +       
Sbjct: 126 NIAAWQLREWSEQN 139

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 11/57 (19%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 58  LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114
           LE ++ ++   +++ +IG+   YL   F      +      E +    ++A+K+V++
Sbjct: 12  LEKVASYITKNERIADIGSDHAYL-PCFAVKNQTASFAIAGEVVDGPFQSAQKQVRS 67

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 10/103 (9%)

Query: 132 GSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
              + DIG GSG ++  +            E  +   +R + N            +   V
Sbjct: 26  HETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLG-----VSDRIAV 80

Query: 190 CADGRRGYPDAAPY-DVIYI--SQAIRDIPWHIVDQLKLGGRM 229
                R + D     DVI+I        +      +L +GGR+
Sbjct: 81  QQGAPRAFDDVPDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRL 123

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 121 KRINFYGHLV-YGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGA 177
           KR+      V  G+ +LD+GS   YL       G      A E V+   + A+KN+    
Sbjct: 4   KRLELVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEA-- 61

Query: 178 PAIALAENFEFVCADGRRGYPDAAPYDVIYIS 209
               L E  +   A+G   + +     VI I+
Sbjct: 62  --HGLKEKIQVRLANGLAAFEETDQVSVITIA 91

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 58  LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114
           LEL++  +  G  +L++G+   YL  +     G        E +    ++A K V+A
Sbjct: 6   LELVASFVSQGAILLDVGSDHAYL-PIELVERGQIKSAIAGEVVEGPYQSAVKNVEA 61

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 29/149 (19%), Positives = 45/149 (30%), Gaps = 31/149 (20%)

Query: 102 PELLEAARKRVKA----KAETYIKRIN-------FYGHLVYGSKVLDIGSGSGYLSALFA 150
           P++ +A            A  Y +R         F G L  G+K+L++G G+GY +    
Sbjct: 3   PDMTQAFDDDTLRFYRGNATAYAERQPRSATLTKFLGELPAGAKILELGCGAGYQAEAML 62

Query: 151 YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQ 210
             G  V A +    L   A     R                   +       YD ++   
Sbjct: 63  AAGFDVDATDGSPELAAEA----SRRLGR-------PVRTMLFHQ-LDAIDAYDAVWAHA 110

Query: 211 AIRDIPWH--------IVDQLKLGGRMLF 231
            +  +P          I   LK GG    
Sbjct: 111 CLLHVPRDELADVLKLIWRALKPGGLFYA 139

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 49.1 bits (117), Expect = 5e-07
 Identities = 23/173 (13%), Positives = 55/173 (31%), Gaps = 22/173 (12%)

Query: 119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAP 178
           +++ I          +VLD+  G+G  +   A  G +V  ++  + + + A +  +    
Sbjct: 29  FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL 88

Query: 179 AIALAENFEFVCADGRRGYPDAAPYDVIYI---------SQAIRDIPWHIVDQLKLGGRM 229
            I      EF+  D          +D + +          + +R +   + + LK GG  
Sbjct: 89  KI------EFLQGDVLE-IAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVF 141

Query: 230 LFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYNT 282
           +       D        +              + I + + +E   +   +   
Sbjct: 142 IT------DFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQKLRFKRL 188

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 48.2 bits (115), Expect = 5e-07
 Identities = 21/113 (18%), Positives = 35/113 (30%), Gaps = 27/113 (23%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
           G+K+LD G G G +    +  G  V   +    L   A    ++  P         +V  
Sbjct: 47  GAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYA----KQDFPEA------RWVVG 96

Query: 192 DGRRGYPDAAPYDVIYIS-------------QAIRDIPWHIVDQLKLGGRMLF 231
           D          +D+I  +              A+     +I   L   GR + 
Sbjct: 97  DLSVDQISETDFDLIVSAGNVMGFLAEDGREPALA----NIHRALGADGRAVI 145

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score = 48.5 bits (115), Expect = 7e-07
 Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 13/109 (11%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
             + L  G G G+     A     V  ++    + + A+        +   AE F FV  
Sbjct: 67  LGRALVPGCGGGHDVVAMASPERFVVGLD----ISESALAKANETYGSSPKAEYFSFVKE 122

Query: 192 DGRRGYPDAAPYDVIYISQAIRDIP--------WHIVDQLKLGGRMLFI 232
           D     P    +D+I+       I           + + LK  G ++ +
Sbjct: 123 DVFTWRPT-ELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITL 170

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 47.9 bits (114), Expect = 8e-07
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 28/111 (25%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
           G  +L++G+G+GY          +   +E  + +        RR AP         +V A
Sbjct: 37  GESLLEVGAGTGYWLRRLP--YPQKVGVEPSEAMLAVG----RRRAPEA------TWVRA 84

Query: 192 DGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQ----------LKLGGRMLF 231
            G    +P  + +DV+ +   +      + D           L+ GG ++ 
Sbjct: 85  WGEALPFPGES-FDVVLLFTTLE----FVEDVERVLLEARRVLRPGGALVV 130

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 58  LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV 112
              L G L  G+ +LE+G G+GY             +   +E    +L   R+R 
Sbjct: 27  ERALKGLLPPGESLLEVGAGTGYWLRRLPY-----PQKVGVEPSEAMLAVGRRRA 76

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 48.3 bits (115), Expect = 8e-07
 Identities = 27/165 (16%), Positives = 48/165 (29%), Gaps = 29/165 (17%)

Query: 122 RINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIA 181
            +  +        +L++GS  G  ++        +  +E  +     A   ++ G   I 
Sbjct: 33  MVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYI- 91

Query: 182 LAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQ-----------LKLGGRML 230
               FE      R        YD I ++  +     HI D            L  GGR+ 
Sbjct: 92  -HSRFEDAQLPRR--------YDNIVLTHVL----EHIDDPVALLKRINDDWLAEGGRLF 138

Query: 231 F----IKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLE 271
                       I     +    +   +    H H   + L +LE
Sbjct: 139 LVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLE 183

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 47.9 bits (114), Expect = 9e-07
 Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 21/114 (18%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVC 190
           G +++D+G G G+        GA  V  ++  + +  RA    R   P         +  
Sbjct: 44  GLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARA----RAAGP----DTGITYER 95

Query: 191 ADGRR-GYPDAAPYDVIYISQAIRDIP--------WHIVDQLKLGGRMLFIKGH 235
           AD  +   P  + +D+ Y S A+  +          H    L  GG  +F   H
Sbjct: 96  ADLDKLHLPQDS-FDLAYSSLALHYVEDVARLFRTVHQA--LSPGGHFVFSTEH 146

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 48.2 bits (114), Expect = 1e-06
 Identities = 20/112 (17%), Positives = 31/112 (27%), Gaps = 17/112 (15%)

Query: 132 GSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
           G  V  +  G         Y    G ++  I++       A     R A   ALA     
Sbjct: 119 GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGA----TRLAAGHALAGQITL 174

Query: 189 VCADGRRGYPDAAPYDVIYISQAIRDIPW---------HIVDQLKLGGRMLF 231
              D  +       YD++  +      P               LK GG ++ 
Sbjct: 175 HRQDAWK-LDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVT 225

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 1/95 (1%)

Query: 20  HNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSG 79
           H      P    +  L  + +     A + +   H      L  HL+ G  V  +  G  
Sbjct: 72  HRLVTHQPGSGALAPLERVFYERL-PAVLATRERHGHFRRALQRHLRPGCVVASVPCGWM 130

Query: 80  YLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114
                         ++  I++ PE L+ A +    
Sbjct: 131 SELLALDYSACPGVQLVGIDYDPEALDGATRLAAG 165

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A Length = 258

 Score = 47.4 bits (112), Expect = 1e-06
 Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 10/179 (5%)

Query: 98  IEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVY 157
           ++ +   +   RK    + E   K +   G   Y   V+D  +G G  + + A +G +V 
Sbjct: 57  VDFVGGAMAHRRKFGGGRGEAVAKAVGIKGD--YLPDVVDATAGLGRDAFVLASVGCRVR 114

Query: 158 AIEHVKNLCKRAMKNIRRGA----PAIALAENFEFVCADGRRGYPDAAP-YDVIYISQAI 212
            +E    +       + RG         L E  + + A       D  P   V+Y+    
Sbjct: 115 MLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMF 174

Query: 213 RDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLE 271
                     L      +F      D+    LL+     + K  V+    Y   L ++ 
Sbjct: 175 PHKQKSA---LVKKEMRVFQSLVGPDLDADGLLEPARLLATKRVVVKRPDYAPPLANVA 230

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 22/112 (19%)

Query: 132 GSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVC 190
            SKVLDIGSG G          GA  + I+   N+   A +        ++      F  
Sbjct: 56  NSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANER-------VSGNNKIIFEA 108

Query: 191 ADGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQ----------LKLGGRMLF 231
            D     +P+   +D+IY   AI  +   + ++          LK  G +L 
Sbjct: 109 NDILTKEFPENN-FDLIYSRDAILAL--SLENKNKLFQKCYKWLKPTGTLLI 157

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 19/115 (16%)

Query: 132 GSKVLDIGSGSGYLSALFA--YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
                D+G G G  + L    Y    +  I+         M  + +   A     N  F 
Sbjct: 34  VLNGYDLGCGPGNSTELLTDRYGVNVITGID-----SDDDM--LEK---AADRLPNTNFG 83

Query: 190 CADGRRGYPDAAPYDVIYISQAIRDIP------WHIVDQLKLGGRMLFIKGHEDD 238
            AD    +  A   D++Y +   + +P        ++DQL+ GG +         
Sbjct: 84  KADLAT-WKPAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQ 137

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 18/107 (16%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
             +VLDIG  SG L A     G +V  IE      ++A + +           +  +   
Sbjct: 33  WKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPY--- 89

Query: 192 DGRRGYPDAAPYDVIYISQAI---RDIPWHIVDQ----LKLGGRMLF 231
                  +   +D +     +    D PW ++++    +K  G +L 
Sbjct: 90  -------EEEQFDCVIFGDVLEHLFD-PWAVIEKVKPYIKQNGVILA 128

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 25/113 (22%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
            S  L+IG  +G  +   A    ++  I+          + I R         +  +   
Sbjct: 52  VSNGLEIGCAAGAFTEKLAPHCKRLTVID-------VMPRAIGRACQRTKRWSHISWAAT 104

Query: 192 DGRRGYPDAAPYDVI-------------YISQAIRDIPWHIVDQLKLGGRMLF 231
           D  +       +D+I              +  AI     ++V  L  GG ++F
Sbjct: 105 DILQFSTA-ELFDLIVVAEVLYYLEDMTQMRTAID----NMVKMLAPGGHLVF 152

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 10/84 (11%)

Query: 135 VLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGR 194
           V+D   G G  +  FA  G +V AI+        A  N    A    +A+  EF+C D  
Sbjct: 82  VVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNN----AEVYGIADKIEFICGDFL 137

Query: 195 RGYPDAAPYDVIYISQAIRDIPWH 218
                    DV+++       PW 
Sbjct: 138 L-LASFLKADVVFL-----SPPWG 155

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 21/114 (18%), Positives = 33/114 (28%), Gaps = 16/114 (14%)

Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNI-RRGAPAIALAENF 186
            +V   K LD+G G+G  S   A  G  V A +          +         +      
Sbjct: 29  KVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNL------ 82

Query: 187 EFVCADGRRGYPDAAPYDVIYIS--------QAIRDIPWHIVDQLKLGGRMLFI 232
                D          YD I  +        + I  +  ++    K GG  L +
Sbjct: 83  HTRVVDLNN-LTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 135

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 45.6 bits (108), Expect = 4e-06
 Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 12/110 (10%)

Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFE 187
           + +   K+L +  G G  +   A +G +V A++         +   ++ A    +     
Sbjct: 26  NQIPQGKILCLAEGEGRNACFLASLGYEVTAVD----QSSVGLAKAKQLAQEKGV--KIT 79

Query: 188 FVCADGRRGYPDAAPYDVIYISQAIRDIPWH------IVDQLKLGGRMLF 231
            V ++       A  ++ I                  +   LK GG  + 
Sbjct: 80  TVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFIL 129

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 45.1 bits (107), Expect = 9e-06
 Identities = 32/177 (18%), Positives = 57/177 (32%), Gaps = 33/177 (18%)

Query: 119 YIKRINFY-GHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGA 177
           Y + + +    +  G ++ DIG G+G  + L A    +V  ++  + + + A +      
Sbjct: 20  YPEWVAWVLEQVEPGKRIADIGCGTGTATLLLA-DHYEVTGVDLSEEMLEIAQEKAMETN 78

Query: 178 PAIALAENFEFVCADGRRGYPDAAPYDVIYIS--------------QAIRDIPWHIVDQL 223
             +      +F   D R       P D I I               Q            L
Sbjct: 79  RHV------DFWVQDMRE-LELPEPVDAITILCDSLNYLQTEADVKQTFDSAARL----L 127

Query: 224 KLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYY 280
             GG++LF      D+ +   ++   NG    T      YI      E+   + H  
Sbjct: 128 TDGGKLLF------DVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHEL 178

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 45.3 bits (107), Expect = 9e-06
 Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 15/111 (13%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVC 190
              VLD+G G G+     A  GAK V  I+  + +   A +  +  +P +       +  
Sbjct: 45  QKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKR--KTTSPVV------CYEQ 96

Query: 191 ADGRRGYPDAAPYDVIYISQAIRDIP------WHIVDQLKLGGRMLFIKGH 235
                   +   Y+V+  S A+  I         +   LK  G  +F   H
Sbjct: 97  KAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEH 147

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 45.3 bits (107), Expect = 9e-06
 Identities = 15/123 (12%), Positives = 38/123 (30%), Gaps = 16/123 (13%)

Query: 132 GSKVLDIGSGSGYLSALFA--YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
             ++ D+G+G+G      A     A+V   E  + + + A +++       A +   E +
Sbjct: 37  ACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLEL-PDNAAFSARIEVL 95

Query: 190 CADGRRGYPDAAP-------YDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTL 242
            AD                 +  + ++      P++     +    +        +    
Sbjct: 96  EADVTLRAKARVEAGLPDEHFHHVIMNP-----PYNDAGDRRTPDALKAEAHAMTE-GLF 149

Query: 243 ELL 245
           E  
Sbjct: 150 EDW 152

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 45.4 bits (107), Expect = 9e-06
 Identities = 10/70 (14%), Positives = 26/70 (37%), Gaps = 1/70 (1%)

Query: 56  LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 115
               +   H      ++++G G G  T      +    ++   +    +++ A    +  
Sbjct: 25  FYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS 84

Query: 116 AETYIKRINF 125
            +TY K ++F
Sbjct: 85  PDTY-KNVSF 93

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 43.9 bits (103), Expect = 3e-05
 Identities = 17/138 (12%), Positives = 34/138 (24%), Gaps = 27/138 (19%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGA---KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
              ++D+G G G  +   A       ++   +    + K A         +    +N  F
Sbjct: 37  RKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAE---VIKEGSPDTYKNVSF 93

Query: 189 VCADG------RRGYPDAAPYDVIYISQAIRDIPWHIVDQ----------LKLGGRMLFI 232
             +             D    D+I   +       H  D           L+  G +   
Sbjct: 94  KISSSDDFKFLGADSVDKQKIDMITAVEC-----AHWFDFEKFQRSAYANLRKDGTIAIW 148

Query: 233 KGHEDDIMTLELLDKFVN 250
              +         D  + 
Sbjct: 149 GYADPIFPDYPEFDDLMI 166

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 40/338 (11%), Positives = 96/338 (28%), Gaps = 98/338 (28%)

Query: 7   PVLTLLDIPH--NIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESP--SDHCLVLELLS 62
            +L+  +I H           S +     TLL     +    F+E     ++  ++  + 
Sbjct: 44  SILSKEEIDHIIMSKDA---VSGTLRLFWTLLSKQEEM-VQKFVEEVLRINYKFLMSPI- 98

Query: 63  GHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP--ELLEAARKRV-KAKAETY 119
              +     +           L+        +V+   ++   +     R+ + + +    
Sbjct: 99  -KTEQRQPSMMTRMYIEQRDRLYN-----DNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 120 IKRINFYGHLVYGSKVLDIGSGSGYL--SALFAY-----MGAKVY------------AIE 160
           +        L+ G     +GSG  ++      +Y     M  K++             +E
Sbjct: 153 V--------LIDG----VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 161 HVKNLCKRAMKN-IRRGAPAIALAENFEFVCADGRR-----GYPDAAPYDVIYISQAIRD 214
            ++ L  +   N   R   +  +      + A+ RR      Y +     V+       +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC--LLVL------LN 252

Query: 215 IPWH--IVDQLKLGGRMLFI---KGHEDDIM--------------------TLELLDKFV 249
           +  +    +   L  ++L     K   D +                        LL K++
Sbjct: 253 V-QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 250 NGSVKT-----TVIHPHVY--IHELKSLEDQKRMFHYY 280
           +   +         +P     I E   + D    +  +
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAES--IRDGLATWDNW 347

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 27/177 (15%), Positives = 55/177 (31%), Gaps = 31/177 (17%)

Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFE 187
           +L    +VLD+G G+G  S      G +V  ++  K + + A +   +            
Sbjct: 51  YLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK-----------N 99

Query: 188 FVCADGRR-GYPDAAPYD-VIYISQAIRDIP--------WHIVDQLKLGGRMLFIKGHED 237
            V A      +P  A ++ V+ +   +  +            V  L   G ++       
Sbjct: 100 VVEAKAEDLPFPSGA-FEAVLALGDVLSYVENKDKAFSEIRRV--LVPDGLLIA-----T 151

Query: 238 DIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYNTPPPQMDLFDGLT 294
                  L + +       +        +  S+      F+ Y   P  +D  +G  
Sbjct: 152 VDNFYTFLQQMIEKDAWDQI--TRFLKTQTTSVGTTLFSFNSYAFKPEDLDSLEGFE 206

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 8/78 (10%)

Query: 45  NAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPEL 104
               +    H L+   L  +LK   +VL++G G+G  +           +V  ++   E+
Sbjct: 32  YETPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEM 88

Query: 105 LEAARKR-----VKAKAE 117
           LE AR++     V+AKAE
Sbjct: 89  LEVAREKGVKNVVEAKAE 106

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 28/155 (18%), Positives = 49/155 (31%), Gaps = 23/155 (14%)

Query: 65  LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTI----EHIPELLEAARKRVKAKAETYI 120
           +K G+K+LEIG G G L+ +    VG SG V  I          L   +      A    
Sbjct: 41  VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLG 100

Query: 121 KRINFYGHLVYGSKVLDIGSGSGYLSALF--AYMGAKVYAIEHV--KNLCKRAMKNIRRG 176
            R+  + +      +  I          F    +    +++ +    N      KN+   
Sbjct: 101 DRLTVHFNTNLSDDLGPIADQH------FDRVVLA---HSLWYFASANALALLFKNMAAV 151

Query: 177 APAIALAENFEFVCADGRRGYPDAAPYDVIYISQA 211
              + +AE         +    D   +    + Q 
Sbjct: 152 CDHVDVAEW------SMQPTALDQIGHLQAAMIQG 180

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} Length = 258

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 26/159 (16%), Positives = 44/159 (27%), Gaps = 14/159 (8%)

Query: 107 AARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLC 166
           A  +R K   E   K +N          V D  +G G  S + A +G  V A E    + 
Sbjct: 63  AQYRRTKGGGELIAKAVNHTA----HPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVA 118

Query: 167 ---KRAMKNIRRGAPAIALAENFEFVCADG----RRGYPDAAPYDVIYISQAIRDIPWHI 219
                 ++           A        +               D++Y+     +     
Sbjct: 119 CLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKPDIVYLDPMYPERRKSA 178

Query: 220 VDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVI 258
             + K       + G   D   + LL      + K  V+
Sbjct: 179 AVK-KEMAYFHRLVGEAQD--EVVLLHTARQTAKKRVVV 214

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 27/137 (19%), Positives = 46/137 (33%), Gaps = 24/137 (17%)

Query: 103 ELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHV 162
           E    +R+ VKA+   YI             +VLDIG G G    L    G +   ++  
Sbjct: 19  EKFRGSRELVKARLRRYIPYFK------GCRRVLDIGCGRGEFLELCKEEGIESIGVDIN 72

Query: 163 KNLCKRAMKNIRRGAPAIALAENFEFVCADGR---RGYPDAAPYDVIYISQAIRDIP-WH 218
           +++ K                  F  V +D     +  PD    D + IS  +  +    
Sbjct: 73  EDMIKFC-------------EGKFNVVKSDAIEYLKSLPD-KYLDGVMISHFVEHLDPER 118

Query: 219 IVDQLKLGGRMLFIKGH 235
           + + L L    +    +
Sbjct: 119 LFELLSLCYSKMKYSSY 135

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 23/165 (13%), Positives = 49/165 (29%), Gaps = 37/165 (22%)

Query: 119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAP 178
           Y+  +     L+   + ++IG G+G     FA        +E  + + + A K       
Sbjct: 35  YLSELQAVKCLLPEGRGVEIGVGTGR----FAVPLKIKIGVEPSERMAEIARKR------ 84

Query: 179 AIALAENFEFVCADGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQ----------LKLGG 227
                     +          D + +D   +   I      + D           LK GG
Sbjct: 85  ------GVFVLKGTAENLPLKDES-FDFALMVTTIC----FVDDPERALKEAYRILKKGG 133

Query: 228 RMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLED 272
            ++        +     L +    + + +V + +      + L D
Sbjct: 134 YLIVG-----IVDRESFLGREYEKNKEKSVFYKNARFFSTEELMD 173

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* Length = 416

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 28/185 (15%), Positives = 53/185 (28%), Gaps = 34/185 (18%)

Query: 113 KAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKN 172
              A  ++              +++IG   G +       G +    E    +  +A + 
Sbjct: 93  AMLARDFLATEL----TGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK 148

Query: 173 IRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIP------WHIVDQLKLG 226
                  I +  +F F  A          P +VIY +  +  IP        +   L   
Sbjct: 149 G------IRVRTDF-FEKATADDVRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPD 201

Query: 227 GRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYNTPPPQ 286
           G  +F   +  DI+     D          +   H ++    S+   + M          
Sbjct: 202 GVFVFEDPYLGDIVAKTSFD---------QIFDEHFFLFSATSV---QGMAQRCG----- 244

Query: 287 MDLFD 291
            +L D
Sbjct: 245 FELVD 249

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 1/84 (1%)

Query: 27  PSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFG 86
           P +   L  L   +    +++M +      ++  +   L    K +E+G  +GY   L  
Sbjct: 31  PREAGFLKELREANESHPDSYMSTSPLAGQLMSFVL-KLVNAKKTIEVGVFTGYSLLLTA 89

Query: 87  AMVGISGKVYTIEHIPELLEAARK 110
             +   GK+  I+   E  E    
Sbjct: 90  LSIPDDGKITAIDFDREAYEIGLP 113

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 64  HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113
            +K GD++L +G  SG   +    ++G  G++Y +E  P ++      V+
Sbjct: 74  PVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVR 123

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233

 Score = 39.3 bits (91), Expect = 8e-04
 Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 18/130 (13%)

Query: 120 IKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRG 176
           + +      +  G ++L +G  SG  ++  + +     ++Y +E    + +  +  +R  
Sbjct: 66  LLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD- 124

Query: 177 APAIALAENFEFVCADGRR--GYPDAAPY-DVIYISQAIRDIPWHIVDQ----LKLGGR- 228
                   N   +  D R    Y       D +Y   A  +    +V      L+ GG  
Sbjct: 125 ------RRNIFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYM 178

Query: 229 MLFIKGHEDD 238
           ++ IK    D
Sbjct: 179 LMAIKARSID 188

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 26  SPSDYPVLT-LLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTL 84
           S  + P+L  L +          M++  +   +L LL   L    KV++IGT +GY    
Sbjct: 23  SLREPPLLAELREETTRSFSTYAMQTAPEQAQLLALLV-KLMQAKKVIDIGTFTGYSAIA 81

Query: 85  FGAMVGISGKVYTIEHIPELLEAARK 110
            G  +   G + T +   +    A++
Sbjct: 82  MGLALPKDGTLITCDVDEKSTALAKE 107

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207

 Score = 43.1 bits (101), Expect = 3e-05
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 11/102 (10%)

Query: 130 VYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
           + G  V D+G+G+G LS     +GAK V  +E  K      ++N+            F+ 
Sbjct: 48  IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGE------FKGKFKV 101

Query: 189 VCADGRRGYPDAAPYDVIYISQ-AIRDIPWHIVDQLKLGGRM 229
              D        +  D++ ++              L     +
Sbjct: 102 FIGDVS---EFNSRVDIVIMNPPFGSQRKHADRPFLLKAFEI 140

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} Length = 480

 Score = 44.4 bits (104), Expect = 3e-05
 Identities = 33/151 (21%), Positives = 54/151 (35%), Gaps = 23/151 (15%)

Query: 113 KAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMK 171
             +  TY + I           VLD+G GSG LS   A  GA K+YA+E    + + A  
Sbjct: 140 YVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEA-STMAQHAEV 198

Query: 172 NIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPW---------HIVDQ 222
            ++       L +    +              D+I IS+ +  + +         H    
Sbjct: 199 LVKSN----NLTDRIVVIPGKVEEVSLP-EQVDII-ISEPMGYMLFNERMLESYLHAKKY 252

Query: 223 LKLGGRM------LFIKGHEDDIMTLELLDK 247
           LK  G M      + +    D+ + +E   K
Sbjct: 253 LKPSGNMFPTIGDVHLAPFTDEQLYMEQFTK 283

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292

 Score = 43.8 bits (102), Expect = 3e-05
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 51  PSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 110
           PS     L +L      G  VL++G   G+LT       G   ++  ++    L+ +AR+
Sbjct: 30  PSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSARQ 88

Query: 111 RVKAKAETYIK 121
            ++      ++
Sbjct: 89  NIRHYLSEELR 99

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 2/76 (2%)

Query: 128 HLVYGSKVLDIGSGSGYLSALFA--YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAEN 185
               G  VLD+G   G+L+   A  +  +++  ++    L   A +NIR           
Sbjct: 43  EWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPP 102

Query: 186 FEFVCADGRRGYPDAA 201
                  G  G     
Sbjct: 103 QTLEGDPGAEGEEGTT 118

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 23/136 (16%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
            S V+D   G+G  +A  A +  KVYA +  +    +  + +          EN E +  
Sbjct: 23  ESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSD-----LGIENTELILD 77

Query: 192 DGR------RGYPDAAPYDVIYISQAIRDIPWH----------IVDQLKLGGRMLFIK-- 233
                    R    AA +++ Y+  A + +             I+D+L++GGR+  +   
Sbjct: 78  GHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137

Query: 234 GHEDDIMTLELLDKFV 249
           GH+   M  + + ++V
Sbjct: 138 GHDGGDMEKDAVLEYV 153

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 59  ELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 118
           + L+  L     V++   G+G  T     + G+S KVY  +   + L    +R+    + 
Sbjct: 14  DFLAEVLDDESIVVDATMGNGNDTAF---LAGLSKKVYAFDVQEQALGKTSQRLS---DL 67

Query: 119 YIKRINFY 126
            I+     
Sbjct: 68  GIENTELI 75

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 24/162 (14%), Positives = 45/162 (27%), Gaps = 32/162 (19%)

Query: 119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAP 178
           +I       + +     LD+  G+G L+          +A++  + +   A    R    
Sbjct: 26  FIIEK-CVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL 84

Query: 179 AIALAENFEFVCADGRRGYPDAAPYDVIYI--------------SQAIRDIPWHIVDQLK 224
                      C D          +D+I                 +  + +  H    LK
Sbjct: 85  KP------RLACQDISN-LNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNH----LK 133

Query: 225 LGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHE 266
            GG  +F      DI +   L + +  +          Y  E
Sbjct: 134 EGGVFIF------DINSYYKLSQVLGNNDFNYDDDEVFYYWE 169

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 28/112 (25%), Positives = 40/112 (35%), Gaps = 22/112 (19%)

Query: 132 GSKVLDIGSGSGYLSALFA--YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
           G+++LD+GSGSG +         G     I+       +A    +R A  + ++E   F+
Sbjct: 37  GTRILDLGSGSGEM-LCTWARDHGITGTGIDMSSLFTAQA----KRRAEELGVSERVHFI 91

Query: 190 CADGRRGYPDAAPYDVIYISQAIRDIPWHIVD----------QLKLGGRMLF 231
             D   GY      DV     A     W               LK GG ML 
Sbjct: 92  HNDA-AGYVANEKCDVAACVGAT----WIAGGFAGAEELLAQSLKPGGIMLI 138

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 1/84 (1%)

Query: 27  PSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFG 86
           P ++  +  L           M + +D    L +L   L      +EIG  +GY      
Sbjct: 40  PREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLL-KLINAKNTMEIGVYTGYSLLATA 98

Query: 87  AMVGISGKVYTIEHIPELLEAARK 110
             +   GK+  ++   E  E    
Sbjct: 99  LAIPEDGKILAMDINKENYELGLP 122

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 45  NAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPEL 104
                       +L LL+  +K    V+  G G G  +  F   + IS +V  I+   + 
Sbjct: 35  RNIPIVDRQTGRLLYLLA-RIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDN 93

Query: 105 LEAARK 110
           +E AR+
Sbjct: 94  VEHARR 99

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 42.4 bits (99), Expect = 7e-05
 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 16/110 (14%)

Query: 131 YGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
             S+ LD G+G G ++             +E VK++ + A + +       A     +F+
Sbjct: 93  GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKREL-------AGMPVGKFI 145

Query: 190 CADGRRGYPDAAPYDVIYISQAIRDIPW--------HIVDQLKLGGRMLF 231
            A           YD+I I      +          H    L   G + F
Sbjct: 146 LASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFF 195

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Length = 348

 Score = 42.7 bits (100), Expect = 8e-05
 Identities = 33/151 (21%), Positives = 54/151 (35%), Gaps = 23/151 (15%)

Query: 113 KAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMK 171
             +  TY + I           VLD+G GSG LS   A  GA K+YA+E    + + A  
Sbjct: 32  YVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEA-STMAQHAEV 90

Query: 172 NIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPW---------HIVDQ 222
            ++       L +    +              D+I IS+ +  + +         H    
Sbjct: 91  LVKSN----NLTDRIVVIPGKVEEVSLP-EQVDII-ISEPMGYMLFNERMLESYLHAKKY 144

Query: 223 LKLGGRM------LFIKGHEDDIMTLELLDK 247
           LK  G M      + +    D+ + +E   K
Sbjct: 145 LKPSGNMFPTIGDVHLAPFTDEQLYMEQFTK 175

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* Length = 375

 Score = 42.8 bits (100), Expect = 8e-05
 Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 17/119 (14%)

Query: 129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
           L  G   +D+G+  G  +         VY++++        M      A ++       +
Sbjct: 209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP------M------AQSLMDTGQVTW 256

Query: 189 VCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDK 247
           +  DG +  P  +    +       D+         L  + L      + I  L+L  K
Sbjct: 257 LREDGFKFRPTRSNISWMVC-----DMVEKPAKVAALMAQWLVNGWCRETIFNLKLPMK 310

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 42.5 bits (100), Expect = 8e-05
 Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 7/81 (8%)

Query: 132 GSKVLDIGSGSGYLSALFAY-MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVC 190
             K++D+ SG+G +  L +    AK+  +E  + L   A +++        L +  E + 
Sbjct: 50  KGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYN----QLEDQIEIIE 105

Query: 191 ADGRRGYPDAAP--YDVIYIS 209
            D ++          D++  +
Sbjct: 106 YDLKKITDLIPKERADIVTCN 126

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Length = 239

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 44  HNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPE 103
             A M+   +    L +L+  +    +++EIGT +GY +  F + +   GK+   +   E
Sbjct: 38  AQANMQISPEEGQFLNILT-KISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEE 96

Query: 104 LLEAARK 110
               ARK
Sbjct: 97  WTNVARK 103

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 2/81 (2%)

Query: 44  HNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPE 103
                    +   +L  L+  L    K L++GT +GY        +   G+V T E   +
Sbjct: 47  PQGDSMMTCEQAQLLANLA-RLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQ 105

Query: 104 LLEAARKRV-KAKAETYIKRI 123
             E  R    +A+AE  I   
Sbjct: 106 PPELGRPLWRQAEAEHKIDLR 126

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* Length = 340

 Score = 42.3 bits (99), Expect = 9e-05
 Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 7/107 (6%)

Query: 113 KAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMK 171
           K + E+Y   I    H+     VLD+G G+G LS   A  GAK V  ++  + L + AM 
Sbjct: 46  KIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMD 104

Query: 172 NIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWH 218
            IR       L +    +       +      DVI IS+ +      
Sbjct: 105 IIR----LNKLEDTITLIKGKIEEVHLPVEKVDVI-ISEWMGYFLLF 146

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 70  KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINF 125
             + I   +G +       +  +  +  I+   E    A+   + +A     R+ F
Sbjct: 59  GAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFR-EAGYSPSRVRF 113

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 23/120 (19%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEH----VKNLCKRAMKNIRR-GAPAIALAENF 186
           G KVLD+G+GSG L+     +G K   ++     +      A  N +R G     L  + 
Sbjct: 121 GDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQ----AEANAKRNGVRPRFLEGSL 176

Query: 187 EFVCADGRRGYPDAAPYDVIY---ISQAIRDIPWHIVDQLKLGGRML---FIKGHEDDIM 240
           E     G        P+D++     ++    +     + L  GGR L    +K     + 
Sbjct: 177 EAALPFG--------PFDLLVANLYAELHAALAPRYREALVPGGRALLTGILKDRAPLVR 228

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 46  AFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELL 105
           A M+   +    +++L   L    KVLE+GT +GY        +   G+V T +      
Sbjct: 40  ANMQVAPEQAQFMQMLI-RLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWT 98

Query: 106 EAARK 110
           + A  
Sbjct: 99  KHAHP 103

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 21/138 (15%), Positives = 47/138 (34%), Gaps = 18/138 (13%)

Query: 111 RVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAM 170
             +++   Y   +          +VLD+  G+G  S +    G  V +++    + K A+
Sbjct: 37  DTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYAL 96

Query: 171 KNIRRGAPAIALAENFEFVCADGR---RGYPDAAPYDVI--------YISQAIRDIPWH- 218
           K         A  + +    A+     +  P    +D +        ++  +  D   H 
Sbjct: 97  KERWNRRKEPAFDK-WVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHR 155

Query: 219 -----IVDQLKLGGRMLF 231
                I   ++ GG ++ 
Sbjct: 156 LALKNIASMVRPGGLLVI 173

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 35/121 (28%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAE------- 184
           G +VLD+G+G G L+   A MGA+V  +E           ++     ++   +       
Sbjct: 234 GRQVLDLGAGYGALTLPLARMGAEVVGVE----------DDLA----SVLSLQKGLEANA 279

Query: 185 -NFEFVCADGRRGYPDAAPYDVIYIS--------QAIRDIPWHIVDQ----LKLGGRMLF 231
              + + +D      + A +D+I ++          I D+    V+     L+ GG    
Sbjct: 280 LKAQALHSDVDEALTEEARFDII-VTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFL 338

Query: 232 I 232
           +
Sbjct: 339 V 339

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 15/124 (12%)

Query: 123 INFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIAL 182
           +     ++   KVLD+G G G  S   + +G  V + +H +N    ++  +        L
Sbjct: 112 VVDAAKIISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNEN----SIAFLNETKEKENL 167

Query: 183 AENFEFVCADGRRGYPDAAPYDVIYIS--------QAIRDIPWHIVDQLKLGGRMLFIKG 234
             N      D          YD I  +        + +  I  ++ +   +GG  L +  
Sbjct: 168 --NISTALYDINAANIQ-ENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA 224

Query: 235 HEDD 238
              D
Sbjct: 225 MSTD 228

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Length = 223

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 46  AFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELL 105
              +        L+LL   ++    +LEIGT  GY T      +   G+V T+E   +  
Sbjct: 38  PAHDVSPTQGKFLQLLV-QIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHA 96

Query: 106 EAARK 110
           + AR 
Sbjct: 97  DIARS 101

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 15/105 (14%), Positives = 29/105 (27%), Gaps = 12/105 (11%)

Query: 104 LLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVK 163
           L    R +  A   + I  +         S +LD+  G+G     F         +E  +
Sbjct: 14  LFYLGRGKDYAAEASDIADL-VRSRTPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSE 72

Query: 164 NLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI 208
           ++   A K             +      D R  +     +  +  
Sbjct: 73  DMLTHARKR----------LPDATLHQGDMRD-FRLGRKFSAVVS 106

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 22/158 (13%), Positives = 48/158 (30%), Gaps = 10/158 (6%)

Query: 23  FMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLT 82
                  Y       + H+  H    E        +    G  K   K+L IG G+G + 
Sbjct: 8   LFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEID 67

Query: 83  -----TLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLD 137
                 +     G+      +E   E +   ++ V   +   ++ + F  H    S+   
Sbjct: 68  LQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSN--LENVKFAWHKETSSEYQS 125

Query: 138 IGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRR 175
                      + ++   +  + +VK++    +K    
Sbjct: 126 R-MLEKKELQKWDFIHM-IQMLYYVKDI-PATLKFFHS 160

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Length = 203

 Score = 40.1 bits (93), Expect = 3e-04
 Identities = 21/124 (16%), Positives = 34/124 (27%), Gaps = 18/124 (14%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
           G++VL    G     +  +  G  V   E  +   +R         P I    +F+   A
Sbjct: 23  GARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGE-QPHITSQGDFKVYAA 81

Query: 192 DGRRGY---------PDAAPYDVIYISQAIRDIP--------WHIVDQLKLGGRMLFIKG 234
            G   +          D       Y   A+  +P         H+   +      L I  
Sbjct: 82  PGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITL 141

Query: 235 HEDD 238
             D 
Sbjct: 142 EYDQ 145

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFE 187
                  VL++ +G G L+  F  +G +V A+E   ++     K  R       + +   
Sbjct: 79  TGPVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRK--RLAEAPADVRDRCT 136

Query: 188 FVCADGRRGYPDAAPYDVIYI 208
            V  D    +     +  + I
Sbjct: 137 LVQGDMSA-FALDKRFGTVVI 156

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 45  NAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPEL 104
           N           +++ L         +LEIGT  GY +++  A +     V TIE    +
Sbjct: 50  NEVPIVDRLTLDLIKQLIRMNNV-KNILEIGTAIGY-SSMQFASISDDIHVTTIERNETM 107

Query: 105 LEAARK 110
           ++ A++
Sbjct: 108 IQYAKQ 113

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 15/110 (13%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
              +LD+G G G +    A         +  +   K A +NI+          +   V +
Sbjct: 53  DDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLD---NYDIRVVHS 109

Query: 192 DGRRGYPDAAPYDVI-----YISQAIRDIPWHIVDQ----LKLGGRMLFI 232
           D      D   Y+ I       +   +++   I+++    LK  G +  +
Sbjct: 110 DLYENVKD-RKYNKIITNPPIRAG--KEVLHRIIEEGKELLKDNGEIWVV 156

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 11/81 (13%), Positives = 23/81 (28%), Gaps = 11/81 (13%)

Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFE 187
           H    + +LD+  G+G      A     V  +E   ++   A +             +  
Sbjct: 47  HSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRR----------NPDAV 96

Query: 188 FVCADGRRGYPDAAPYDVIYI 208
               D R  +     +  +  
Sbjct: 97  LHHGDMRD-FSLGRRFSAVTC 116

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 2/87 (2%)

Query: 132 GSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
             +V+D+G G G L  +        ++  ++      + A + + R        E  + +
Sbjct: 30  ARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLI 89

Query: 190 CADGRRGYPDAAPYDVIYISQAIRDIP 216
                        YD   + + I  + 
Sbjct: 90  QGALTYQDKRFHGYDAATVIEVIEHLD 116

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Length = 376

 Score = 40.2 bits (93), Expect = 5e-04
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 113 KAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMK 171
           + + + Y   +    H   G  VLD+G+GSG L+   A  GA KVYA+E    +   A  
Sbjct: 45  RVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEA-TKMADHARA 103

Query: 172 NIRR 175
            ++ 
Sbjct: 104 LVKA 107

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 3/86 (3%)

Query: 26  SPSDYPVLT-LLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTL 84
           S  D   L  L     ++       SP +    L LL   L    +VLEIG   GY    
Sbjct: 32  SADDSFYLAQLRRETAHLPGAPMQISP-EQAQFLGLLI-SLTGAKQVLEIGVFRGYSALA 89

Query: 85  FGAMVGISGKVYTIEHIPELLEAARK 110
               +   G++   +  P     A+K
Sbjct: 90  MALQLPPDGQIIACDQDPNATAIAKK 115

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 39.7 bits (92), Expect = 6e-04
 Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 16/135 (11%)

Query: 119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGA 177
           +IK      +   G  VLD+G G G     +   G    Y +    ++ + ++ + R  A
Sbjct: 52  FIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGV----DIAEVSINDARVRA 107

Query: 178 PAIALAENFEFVCADG-RRGYPDAAPYDVIYISQAI----------RDIPWHIVDQLKLG 226
             +       F   D   R       +DVI    +                +I   L+ G
Sbjct: 108 RNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPG 167

Query: 227 GRMLFIKGHEDDIMT 241
           G  +      D I+ 
Sbjct: 168 GYFIMTVPSRDVILE 182

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* Length = 349

 Score = 39.7 bits (92), Expect = 7e-04
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 113 KAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMK 171
           + +  TY   +    HL     VLD+GSG+G L    A  GA KV  IE   ++   A+K
Sbjct: 48  EVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIE-CSSISDYAVK 106

Query: 172 NIRR 175
            ++ 
Sbjct: 107 IVKA 110

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 46  AFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELL 105
              +  ++    L LL   L    ++LEIGT  GY T      +   G++ T+E      
Sbjct: 43  PAHDVAANQGQFLALLV-RLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHA 101

Query: 106 EAARK 110
           + AR+
Sbjct: 102 QVARE 106

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 39.2 bits (91), Expect = 8e-04
 Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 8/80 (10%)

Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENF 186
            L    ++L +G G+  LS      G   V ++++   +                     
Sbjct: 39  ELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH-------VPQL 91

Query: 187 EFVCADGRRGYPDAAPYDVI 206
            +   D R+    +A +DV+
Sbjct: 92  RWETMDVRKLDFPSASFDVV 111

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Length = 328

 Score = 39.7 bits (92), Expect = 8e-04
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 117 ETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRR 175
            +Y   I     L     VLD+G G+G LS   A  GAK V  ++   ++ + A + +  
Sbjct: 24  LSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDM-SSIIEMAKELVEL 82

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	299
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.9
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.89
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.89
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.88
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.88
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.87
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.82
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.8
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.64
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.63
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.62
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.61
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.61
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.6
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.6
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.6
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.59
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.59
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.58
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.58
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.58
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.57
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.57
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.57
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.56
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.56
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.56
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.56
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.56
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.55
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.55
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.55
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.55
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.54
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.54
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.54
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.54
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.54
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.54
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.53
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.53
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.53
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.53
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.53
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.53
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.53
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.53
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.52
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.52
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.52
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.52
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.52
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.52
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.51
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.51
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.51
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.51
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.51
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.5
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.5
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.5
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.5
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.5
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.5
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.5
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.5
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.49
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.49
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.49
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.49
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.49
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.48
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.48
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.48
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.48
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.48
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.48
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.48
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.48
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.48
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.48
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.48
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.48
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.47
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.47
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.47
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.47
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.47
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.47
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.47
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.47
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.47
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.47
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.46
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.46
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.46
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.46
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.46
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.46
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.45
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.45
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.45
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.45
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.45
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.45
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.45
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.45
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.45
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.45
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.44
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.44
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.44
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.44
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.44
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.44
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.43
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.43
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.43
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.43
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.43
3ocj_A	305	Putative exported protein; structural genomics, PS	99.43
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.43
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.43
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.42
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.42
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.42
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.42
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.42
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.41
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.41
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.41
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.41
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.41
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.41
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.41
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.41
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.41
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.4
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.4
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.4
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.4
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.4
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.4
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.4
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.39
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.39
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.39
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.39
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.39
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.38
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.38
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.38
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.38
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.38
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.38
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.38
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.38
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.37
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.36
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.36
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.36
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.36
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.36
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.36
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.36
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.35
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.35
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.35
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.35
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.34
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.34
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.34
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.34
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.34
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.33
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.33
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.33
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.32
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.32
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.31
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.31
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.31
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.31
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.31
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.3
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.3
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.3
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.3
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.3
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.3
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.3
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.29
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.29
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.29
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.29
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.29
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.28
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.27
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.27
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.27
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.26
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.26
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.26
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.26
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.25
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.25
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.25
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.25
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.25
2o07_A	304	Spermidine synthase; structural genomics, structur	99.24
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.24
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.24
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.23
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.23
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.23
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.23
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.23
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.22
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.21
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.21
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.21
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.2
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.2
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.2
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.19
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.18
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.18
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.18
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.17
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.17
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.17
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.17
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.16
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.16
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.16
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.14
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.13
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.13
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.12
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.11
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.11
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.1
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.09
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.09
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.08
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.08
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.05
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.03
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.03
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.02
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.02
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.02
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.01
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.01
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.0
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.98
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.98
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.96
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.96
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.95
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.93
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.92
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.88
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.88
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.86
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.85
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.83
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.81
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.79
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.78
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.77
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.74
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.7
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.67
3lkd_A	542	Type I restriction-modification system methyltrans	98.65
3khk_A	544	Type I restriction-modification system methylation	98.63
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.6
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.55
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.55
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.52
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.46
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.46
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.46
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	98.46
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	98.43
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	98.43
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	98.43
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.42
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	98.4
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.39
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.39
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	98.38
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.37
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.35
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.35
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.34
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.33
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.33
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.31
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.29
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.28
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.28
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.25
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.24
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.24
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.23
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.23
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.23
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.23
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.22
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.22
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.21
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.21
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.21
1ws6_A	171	Methyltransferase; structural genomics, riken stru	98.21
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.19
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.19
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.19
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.18
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.17
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.17
2esr_A	177	Methyltransferase; structural genomics, hypothetic	98.17
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.17
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.16
3ufb_A	530	Type I restriction-modification system methyltran	98.16
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	98.16
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.16
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	98.14
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.14
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	98.14
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.14
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.14
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.13
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.13
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.13
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.12
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.12
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.12
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.12
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.12
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.11
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.11
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	98.1
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	98.1
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.09
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.09
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.09
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	98.09
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.09
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	98.08
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.08
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.08
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.08
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.08
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	98.07
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.07
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.06
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.06
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	98.05
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.05
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.05
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.05
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.05
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.04
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.04
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.04
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.03
2b3t_A	276	Protein methyltransferase HEMK; translation termin	98.03
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	98.03
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.03
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.03
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.02
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.02
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	98.02
2frn_A	278	Hypothetical protein PH0793; structural genomics,	98.02
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.02
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.01
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.01
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.01
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.01
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.01
3lpm_A	259	Putative methyltransferase; structural genomics, p	98.0
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	97.99
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	97.99
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	97.99
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.99
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	97.98
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	97.98
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	97.97
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	97.97
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	97.97
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	97.96
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	97.96
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	97.96
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	97.96
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	97.96
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.95
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	97.95
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	97.95
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	97.95
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	97.94
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	97.94
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	97.94
3ege_A	261	Putative methyltransferase from antibiotic biosyn	97.93
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	97.93
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	97.93
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	97.93
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	97.93
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.93
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.93
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	97.93
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	97.92
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	97.92
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	97.91
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.91
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	97.91
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	97.91
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	97.91
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	97.91
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.91
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	97.9
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	97.89
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.89
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	97.88
3ocj_A	305	Putative exported protein; structural genomics, PS	97.88
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.87
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	97.87
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	97.87
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	97.87
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	97.85
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	97.85
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	97.85
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	97.85
3i9f_A	170	Putative type 11 methyltransferase; structural gen	97.85
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.85
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	97.84
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.84
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	97.83
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	97.83
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	97.83
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.83
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	97.83
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	97.82
2p7i_A	250	Hypothetical protein; putative methyltransferase,	97.82
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	97.82
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	97.81
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	97.8
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	97.8
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	97.8
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.79
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	97.79
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	97.79
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	97.79
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	97.79
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	97.78
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	97.78
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	97.78
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	97.77
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	97.77
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	97.77
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	97.76
3k6r_A	278	Putative transferase PH0793; structural genomics,	97.76
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	97.76
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	97.75
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	97.75
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	97.74
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	97.73
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	97.73
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	97.73
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	97.72
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	97.72
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	97.72
3lcc_A	235	Putative methyl chloride transferase; halide methy	97.71
2oo3_A	283	Protein involved in catabolism of external DNA; st	97.71
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	97.7
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	97.69
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	97.69
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	97.69
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	97.68
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.68
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	97.67
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	97.67
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	97.65
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	97.64
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	97.64
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	97.63
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	97.63
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	97.63
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	97.62
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	97.57
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	97.57
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.56
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	97.56
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	97.56
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	97.56
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	97.55
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.54
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	97.54
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	97.54
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	97.53

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.90  E-value=1.2e-23  Score=177.51  Aligned_cols=189  Identities=29%  Similarity=0.525  Sum_probs=158.1

Q ss_pred             eeccCCCcCcCccccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhC
Q psy7837          11 LLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVG   90 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~   90 (299)
                      ..++...++|+.|++.  .    +|.|.++++++++.++.|.+.+.+++.+...++++.+|||+|||+|+++..+++..+
T Consensus        34 ~~~a~~~~~r~~f~~~--~----~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~  107 (227)
T 1r18_A           34 VAQAMKETDRKHYSPR--N----PYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIK  107 (227)
T ss_dssp             HHHHHHTSCGGGTCSS--C----TTBSSCEEEETTEEECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHcCCc--c----cccCCCcccCCCCccCChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcc
Confidence            4556667899999843  2    899999999999999999999999999976689999999999999999999998775


Q ss_pred             C-----CceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHH
Q psy7837          91 I-----SGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNL  165 (299)
Q Consensus        91 ~-----~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~  165 (299)
                      .     .++++++|+++.+++.+++++....                                                 
T Consensus       108 ~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-------------------------------------------------  138 (227)
T 1r18_A          108 AKGVDADTRIVGIEHQAELVRRSKANLNTDD-------------------------------------------------  138 (227)
T ss_dssp             HSCCCTTCEEEEEESCHHHHHHHHHHHHHHH-------------------------------------------------
T ss_pred             cccCCccCEEEEEEcCHHHHHHHHHHHHhcC-------------------------------------------------
Confidence            3     3689999999999998888776510                                                 


Q ss_pred             HHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCCCcceeeeE
Q psy7837         166 CKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELL  245 (299)
Q Consensus       166 ~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~  245 (299)
                          ...        ....+++++.+|....+...++||+|+++..++++++++.++|||||++++.+......+.+..+
T Consensus       139 ----~~~--------~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~l~~~  206 (227)
T 1r18_A          139 ----RSM--------LDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVGPDGGSQYMQQY  206 (227)
T ss_dssp             ----HHH--------HHHTSEEEEESCGGGCCGGGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEEESCSSSCEEEEEE
T ss_pred             ----ccc--------cCCCceEEEECCcccCCCcCCCccEEEECCchHHHHHHHHHHhcCCCEEEEEEecCCCceEEEEE
Confidence                000        00357999999988755444789999999999999999999999999999999876666888888


Q ss_pred             EeecCCceEEEEecceeccccc
Q psy7837         246 DKFVNGSVKTTVIHPHVYIHEL  267 (299)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~  267 (299)
                      .+..++.+..+.+.++.|+ |+
T Consensus       207 ~~~~~~~~~~~~l~~~~~~-p~  227 (227)
T 1r18_A          207 DKDANGKVEMTRLMGVMYV-PL  227 (227)
T ss_dssp             EECTTSCEEEEEEEEECCC-CC
T ss_pred             EEcCCCcEEEEEeccEEEe-eC
Confidence            8887888999999999998 75

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.89  E-value=3e-22  Score=168.77  Aligned_cols=198  Identities=33%  Similarity=0.563  Sum_probs=161.6

Q ss_pred             eccCCCcCcCccccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCC
Q psy7837          12 LDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGI   91 (299)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~   91 (299)
                      .++...++|+.|....      .|.+.+.++..++.++.|.....+++.+...++++.+|||+|||+|+.+..+++..++
T Consensus        28 ~~a~~~~~r~~f~~~~------~y~~~~~~~~~~~~~~~p~~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~  101 (226)
T 1i1n_A           28 FEVMLATDRSHYAKCN------PYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGC  101 (226)
T ss_dssp             HHHHHTSCGGGTCSSC------TTSSSCEEEETTEEECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCT
T ss_pred             HHHHHhCCHHHcCCCc------cCCCCccccCCCceecCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCC
Confidence            3444557888887422      7888888888899999999999999988766889999999999999999999999877


Q ss_pred             CceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHH
Q psy7837          92 SGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMK  171 (299)
Q Consensus        92 ~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~  171 (299)
                      .++++++|+++.+++.+++++....                                                       
T Consensus       102 ~~~v~~vD~s~~~~~~a~~~~~~~~-------------------------------------------------------  126 (226)
T 1i1n_A          102 TGKVIGIDHIKELVDDSVNNVRKDD-------------------------------------------------------  126 (226)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHHHC-------------------------------------------------------
T ss_pred             CcEEEEEeCCHHHHHHHHHHHHhhc-------------------------------------------------------
Confidence            7899999999999999988876510                                                       


Q ss_pred             HHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCCCcceeeeEEeecCC
Q psy7837         172 NIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNG  251 (299)
Q Consensus       172 ~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~  251 (299)
                       ...     ....++.++.+|+.......++||+|+++.+++++++++.++|||||++++++.+....+.+..+.+..++
T Consensus       127 -~~~-----~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~  200 (226)
T 1i1n_A          127 -PTL-----LSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDG  200 (226)
T ss_dssp             -THH-----HHTSSEEEEESCGGGCCGGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEESCTTSCEEEEEEEECTTS
T ss_pred             -ccc-----cCCCcEEEEECCcccCcccCCCcCEEEECCchHHHHHHHHHhcCCCcEEEEEEecCCCceEEEEEEEcCCC
Confidence             000     01458999999988655445789999999999999999999999999999999877666777778887788


Q ss_pred             ceEEEEecceeccccccccccccccc
Q psy7837         252 SVKTTVIHPHVYIHELKSLEDQKRMF  277 (299)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (299)
                      .+....+.++.|+ |+......+..|
T Consensus       201 ~~~~~~~~~~~f~-p~~~~~~~~~~~  225 (226)
T 1i1n_A          201 SIKMKPLMGVIYV-PLTDKEKQWSRW  225 (226)
T ss_dssp             CEEEEEEEEECCC-BCCCHHHHCCCC
T ss_pred             cEEEEEcCceEEE-eccCCccccccc
Confidence            8999999999999 998875444444

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.89  E-value=1.9e-22  Score=168.01  Aligned_cols=182  Identities=26%  Similarity=0.401  Sum_probs=155.3

Q ss_pred             eccCCCcCcCccccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCC
Q psy7837          12 LDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGI   91 (299)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~   91 (299)
                      +++...++|+.|+  |..+...+|.+.+.+++.++.++.|.....+++.+.  ++++.+|||+|||+|+++..+++.   
T Consensus        26 ~~~~~~~~r~~f~--~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~---   98 (210)
T 3lbf_A           26 LNALAAVPREKFV--DEAFEQKAWDNIALPIGQGQTISQPYMVARMTELLE--LTPQSRVLEIGTGSGYQTAILAHL---   98 (210)
T ss_dssp             HHHHHHSCGGGGS--CGGGGGGTTSSSCEECTTSCEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH---
T ss_pred             HHHHHhCCHHHcC--CcchhhhccCCCccccCCCCEeCCHHHHHHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHh---
Confidence            3455678899998  556778899999999999999999999999999886  889999999999999999999887   


Q ss_pred             CceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHH
Q psy7837          92 SGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMK  171 (299)
Q Consensus        92 ~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~  171 (299)
                      .++++++|+++.+++.+++++..                                                         
T Consensus        99 ~~~v~~vD~~~~~~~~a~~~~~~---------------------------------------------------------  121 (210)
T 3lbf_A           99 VQHVCSVERIKGLQWQARRRLKN---------------------------------------------------------  121 (210)
T ss_dssp             SSEEEEEESCHHHHHHHHHHHHH---------------------------------------------------------
T ss_pred             CCEEEEEecCHHHHHHHHHHHHH---------------------------------------------------------
Confidence            35788888888888888887766                                                         


Q ss_pred             HHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCCCcceeeeEEeecCC
Q psy7837         172 NIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNG  251 (299)
Q Consensus       172 ~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~  251 (299)
                               ....+++++.+|........++||+|+++.+++++++.+.++|+|||++++++++  ..+.+..+.+ ..+
T Consensus       122 ---------~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~pgG~lv~~~~~--~~~~~~~~~~-~~~  189 (210)
T 3lbf_A          122 ---------LDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGE--EHQYLKRVRR-RGG  189 (210)
T ss_dssp             ---------TTCCSEEEEESCGGGCCGGGCCEEEEEESSBCSSCCTHHHHTEEEEEEEEEEECS--SSCEEEEEEE-ETT
T ss_pred             ---------cCCCceEEEECCcccCCccCCCccEEEEccchhhhhHHHHHhcccCcEEEEEEcC--CceEEEEEEE-cCC
Confidence                     3455899999999876655678999999999999999999999999999999988  3466777777 456


Q ss_pred             ceEEEEecceecccccccc
Q psy7837         252 SVKTTVIHPHVYIHELKSL  270 (299)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~  270 (299)
                      .+..+.+.++.|+ |+.++
T Consensus       190 ~~~~~~~~~~~f~-pl~~~  207 (210)
T 3lbf_A          190 EFIIDTVEAVRFV-PLVKG  207 (210)
T ss_dssp             EEEEEEEEECCCC-BCCCS
T ss_pred             eEEEEEeccEEEE-EccCc
Confidence            7999999999999 98875

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.88  E-value=1.8e-22  Score=170.24  Aligned_cols=186  Identities=20%  Similarity=0.373  Sum_probs=156.6

Q ss_pred             eeeccCCCcCcCccccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHh
Q psy7837          10 TLLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMV   89 (299)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~   89 (299)
                      ..+++...++|+.|++.  .    +|.+.+.++..++.++.|...+.+++.+...++++.+|||+|||+|+++..+++..
T Consensus        29 ~v~~~~~~~~r~~f~p~--~----~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~  102 (227)
T 2pbf_A           29 DVYNTMLQVDRGKYIKE--I----PYIDTPVYISHGVTISAPHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKM  102 (227)
T ss_dssp             HHHHHHHTSCGGGTCSS--S----TTSSSCEEEETTEEECCHHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHT
T ss_pred             HHHHHHHhCCHHHcCCc--c----cCCCCccccCCCCccCChHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHh
Confidence            34556678899999843  2    78899999999999999999999999987668999999999999999999999988


Q ss_pred             C----CCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHH
Q psy7837          90 G----ISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNL  165 (299)
Q Consensus        90 ~----~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~  165 (299)
                      +    +.++++++|+++.+++.+++++...                                                  
T Consensus       103 ~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------------------------------------------------  132 (227)
T 2pbf_A          103 NVLENKNSYVIGLERVKDLVNFSLENIKRD--------------------------------------------------  132 (227)
T ss_dssp             TTTTCTTCEEEEEESCHHHHHHHHHHHHHH--------------------------------------------------
T ss_pred             cccCCCCCEEEEEeCCHHHHHHHHHHHHHc--------------------------------------------------
Confidence            6    6678999999999999888887761                                                  


Q ss_pred             HHHHHHHHHhcCCccc----CCCCeEEEEcCCCCCC----CCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         166 CKRAMKNIRRGAPAIA----LAENFEFVCADGRRGY----PDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       166 ~~~a~~~~~~~~~~~~----~~~~v~~~~~d~~~~~----~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                                     .    ...+++++.+|+....    ...++||+|+++..++++++++.++|+|||++++.+++. 
T Consensus       133 ---------------~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lv~~~~~~-  196 (227)
T 2pbf_A          133 ---------------KPELLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELPEILVDLLAENGKLIIPIEED-  196 (227)
T ss_dssp             ---------------CGGGGSSTTEEEEECCGGGCCHHHHHHHCCEEEEEECSBBSSCCHHHHHHEEEEEEEEEEEEET-
T ss_pred             ---------------CccccccCCEEEEECChHhcccccCccCCCcCEEEECCchHHHHHHHHHhcCCCcEEEEEEccC-
Confidence                           1    1468999999988754    444789999999999999999999999999999999863 


Q ss_pred             CcceeeeEEeecCCceEEEEecceeccccccc
Q psy7837         238 DIMTLELLDKFVNGSVKTTVIHPHVYIHELKS  269 (299)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (299)
                      ..+.+..+.+ .++.+..+.+..+.|+ |+++
T Consensus       197 ~~~~~~~~~~-~~~~~~~~~~~~~~~~-pl~~  226 (227)
T 2pbf_A          197 YTQVLYEITK-KNGKIIKDRLFDVCFV-SLKK  226 (227)
T ss_dssp             TEEEEEEEEC-SCC-CEEEEEEEECCC-BCCC
T ss_pred             CceEEEEEEE-eCCeEEEEEeccEEEE-eccC
Confidence            3467777777 6778999999999999 8865

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.88  E-value=3.3e-22  Score=169.67  Aligned_cols=189  Identities=29%  Similarity=0.445  Sum_probs=159.5

Q ss_pred             eeccCCCcCcCccccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhC
Q psy7837          11 LLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVG   90 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~   90 (299)
                      ..++...++|+.|+  |+.+...+|.+.+.++..++.++.|.+...+++.+.  ++++.+|||+|||+|+++..+++..+
T Consensus        39 ~~~a~~~v~r~~f~--~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~  114 (235)
T 1jg1_A           39 VERAFLKYPRYLSV--EDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK  114 (235)
T ss_dssp             HHHHHHHSCGGGGS--CGGGGGGTTSSSCEECSTTCEECCHHHHHHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC
T ss_pred             HHHHHHhCCHhhhC--CchhhhcCccCCCcccCCCceeccHHHHHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC
Confidence            34455678899998  556888899999999999999999999999999886  88999999999999999999999875


Q ss_pred             CCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHH
Q psy7837          91 ISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAM  170 (299)
Q Consensus        91 ~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~  170 (299)
                        ++++++|+++.+++.+++++..                                                        
T Consensus       115 --~~v~~vD~~~~~~~~a~~~~~~--------------------------------------------------------  136 (235)
T 1jg1_A          115 --TDVYTIERIPELVEFAKRNLER--------------------------------------------------------  136 (235)
T ss_dssp             --SCEEEEESCHHHHHHHHHHHHH--------------------------------------------------------
T ss_pred             --CEEEEEeCCHHHHHHHHHHHHH--------------------------------------------------------
Confidence              5799999999988888888776                                                        


Q ss_pred             HHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCCCcceeeeEEeecC
Q psy7837         171 KNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVN  250 (299)
Q Consensus       171 ~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~  250 (299)
                                ....+++++.+|....+....+||+|+++.+++++++++.++|+|||++++++++....+.+..+.+ .+
T Consensus       137 ----------~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~~L~pgG~lvi~~~~~~~~~~l~~~~~-~~  205 (235)
T 1jg1_A          137 ----------AGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHLWQELLEVRK-TK  205 (235)
T ss_dssp             ----------TTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEECSSSSCEEEEEEEE-ET
T ss_pred             ----------cCCCCcEEEECCcccCCCCCCCccEEEECCcHHHHHHHHHHhcCCCcEEEEEEecCCCccEEEEEEE-eC
Confidence                      3455799999998554444456999999999999999999999999999999988765567777777 56


Q ss_pred             CceEEEEecceeccccccccccc
Q psy7837         251 GSVKTTVIHPHVYIHELKSLEDQ  273 (299)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~  273 (299)
                      +.+..+.+.++.|+ |++.....
T Consensus       206 ~~~~~~~~~~~~f~-p~~~~~~~  227 (235)
T 1jg1_A          206 DGIKIKNHGGVAFV-PLIGEYGW  227 (235)
T ss_dssp             TEEEEEEEEEECCC-BCBSTTSB
T ss_pred             CeEEEEEeccEEEE-EccCCCcc
Confidence            78999999999999 99877433

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.87  E-value=1.9e-21  Score=162.51  Aligned_cols=187  Identities=33%  Similarity=0.483  Sum_probs=157.8

Q ss_pred             eeeccCCCcCcCccccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHh
Q psy7837          10 TLLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMV   89 (299)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~   89 (299)
                      ..+++...++|+.|+  |..+...+|.+.+.++..++.++.|.....+++.+.  +.++.+|||+|||+|.++..+++..
T Consensus        24 ~v~~a~~~~~r~~~~--~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~   99 (215)
T 2yxe_A           24 RVIDALLKVPREEFL--PEHLKEYAYVDTPLEIGYGQTISAIHMVGMMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIV   99 (215)
T ss_dssp             HHHHHHHHSCGGGGS--CGGGGGGTTSCSCEEEETTEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHcC--CchhhhhcccCCCccCCCCcEeCcHHHHHHHHHhhC--CCCCCEEEEECCCccHHHHHHHHHh
Confidence            345566678899998  556778889999999999999999999988888875  8899999999999999999999988


Q ss_pred             CCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHH
Q psy7837          90 GISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRA  169 (299)
Q Consensus        90 ~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a  169 (299)
                      ++.++++++|+++.+++.+++++..                                                       
T Consensus       100 ~~~~~v~~vD~~~~~~~~a~~~~~~-------------------------------------------------------  124 (215)
T 2yxe_A          100 GEDGLVVSIERIPELAEKAERTLRK-------------------------------------------------------  124 (215)
T ss_dssp             CTTSEEEEEESCHHHHHHHHHHHHH-------------------------------------------------------
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHH-------------------------------------------------------
Confidence            7667899999999999888887766                                                       


Q ss_pred             HHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCCCcceeeeEEeec
Q psy7837         170 MKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFV  249 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~  249 (299)
                                 ....+++++.+|........++||+|+++.+++++++++.++|+|||++++.+++..  +.+..+.+. 
T Consensus       125 -----------~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~pgG~lv~~~~~~~--~~~~~~~~~-  190 (215)
T 2yxe_A          125 -----------LGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVGRYL--QRLVLAEKR-  190 (215)
T ss_dssp             -----------HTCTTEEEEESCGGGCCGGGCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEEESSSS--EEEEEEEEE-
T ss_pred             -----------cCCCCeEEEECCcccCCCCCCCeeEEEECCchHHHHHHHHHHcCCCcEEEEEECCCC--cEEEEEEEe-
Confidence                       244579999999876554457899999999999999999999999999999998764  677777775 


Q ss_pred             CCceEEEEecceecccccccc
Q psy7837         250 NGSVKTTVIHPHVYIHELKSL  270 (299)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~  270 (299)
                      .+.+....+.++.|+ |+...
T Consensus       191 ~~~~~~~~~~~~~~~-p~~~~  210 (215)
T 2yxe_A          191 GDEIIIKDCGPVAFV-PLVGK  210 (215)
T ss_dssp             TTEEEEEEEEEECCC-BCBST
T ss_pred             CCEEEEEEeccEEEE-ecccc
Confidence            457999999999999 77654

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.82  E-value=9.5e-20  Score=161.36  Aligned_cols=189  Identities=28%  Similarity=0.406  Sum_probs=153.4

Q ss_pred             eeeccCCCcCcCccccCCCCCC-ccccccccc-ccccc---cccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHH
Q psy7837          10 TLLDIPHNIGHNAFMESPSDYP-VLTLLDIPH-NIGHN---AFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTL   84 (299)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~-~~~y~~~~~-~~~~~---~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~   84 (299)
                      ..+++...++|+.|++.  ... ..+|.+.+. ++..+   +..+.|.+...+++.+.  +++|++|||+|||+|.++..
T Consensus        17 ~v~~a~~~vpr~~fl~~--~~~y~~~y~~~~~~~l~~~~f~q~~~~~~~~~~l~~~l~--~~~~~~VLDiGcG~G~~~~~   92 (317)
T 1dl5_A           17 HIAKAFLEIPREEFLTK--SYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGMRVLEIGGGTGYNAAV   92 (317)
T ss_dssp             HHHHHHHHSCGGGGCSS--CCCHHHHTSSSCEEEEECSSCEEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHH
T ss_pred             HHHHHHHhCCHHHhCCc--hhccccCccCCCcccccCCCcceeccCHHHHHHHHHhcC--CCCcCEEEEecCCchHHHHH
Confidence            45567778999999844  344 557888888 88888   88889999988888886  88999999999999999999


Q ss_pred             HHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChH
Q psy7837          85 FGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKN  164 (299)
Q Consensus        85 la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~  164 (299)
                      +++..+..++++++|+++.+++.+++++..                                                  
T Consensus        93 la~~~~~~~~v~gvD~s~~~~~~a~~~~~~--------------------------------------------------  122 (317)
T 1dl5_A           93 MSRVVGEKGLVVSVEYSRKICEIAKRNVER--------------------------------------------------  122 (317)
T ss_dssp             HHHHHCTTCEEEEEESCHHHHHHHHHHHHH--------------------------------------------------
T ss_pred             HHHhcCCCCEEEEEECCHHHHHHHHHHHHH--------------------------------------------------
Confidence            999876567899999999999888888766                                                  


Q ss_pred             HHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCC-Ccceee
Q psy7837         165 LCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHED-DIMTLE  243 (299)
Q Consensus       165 ~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~-~~~~~~  243 (299)
                                      .+..+++++.+|+....+..++||+|+++.+++++.+.+.++|||||++++.+.+.. ..+.+.
T Consensus       123 ----------------~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~  186 (317)
T 1dl5_A          123 ----------------LGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAF  186 (317)
T ss_dssp             ----------------TTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSCCCHHHHHHEEEEEEEEEEBCBGGGTBCEEE
T ss_pred             ----------------cCCCCeEEEECChhhccccCCCeEEEEEcCCHHHHHHHHHHhcCCCcEEEEEECCCCcccceEE
Confidence                            345679999999987555457899999999999999999999999999999986653 124455


Q ss_pred             eEEeecCCceEEEEecceecccccccc
Q psy7837         244 LLDKFVNGSVKTTVIHPHVYIHELKSL  270 (299)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (299)
                      .+.+.. ..+..+.+++..|. |....
T Consensus       187 ~~~~~~-~~~~~~~i~~~~~~-p~~~~  211 (317)
T 1dl5_A          187 LFKKKD-PYLVGNYKLETRFI-TAGGN  211 (317)
T ss_dssp             EEEEET-TEEEEEEEEECCCC-BCCGG
T ss_pred             EEEEeC-CcEEEEEeccEEEE-EccCc
Confidence            555543 46888888888888 77653

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.80  E-value=1.9e-19  Score=151.90  Aligned_cols=182  Identities=25%  Similarity=0.334  Sum_probs=146.3

Q ss_pred             eeccCCCcCcCccccCCCCCCccccc--ccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHH
Q psy7837          11 LLDIPHNIGHNAFMESPSDYPVLTLL--DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAM   88 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~y~--~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~   88 (299)
                      .+++...++|+.|+  ++.+...+|.  +...++..++.+..|.+...+++.+.  +.++.+|||+|||+|.++..+++.
T Consensus        16 v~~a~~~v~r~~f~--~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~   91 (231)
T 1vbf_A           16 LAEAFNKVDRSLFL--PENLKDYAYAHTHEALPILPGINTTALNLGIFMLDELD--LHKGQKVLEIGTGIGYYTALIAEI   91 (231)
T ss_dssp             HHHHHHHSCHHHHS--CGGGGGGSSSSTTCCEEEETTEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH
T ss_pred             HHHHHHhCCHHHcC--CcchhhhccccCCCceeeCCCCccCCHHHHHHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHH
Confidence            34566678999997  5567888899  99999999999999999988888886  889999999999999999999876


Q ss_pred             hCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHH
Q psy7837          89 VGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKR  168 (299)
Q Consensus        89 ~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~  168 (299)
                      .   .+++++|+++.+++.+++++..                                                      
T Consensus        92 ~---~~v~~vD~~~~~~~~a~~~~~~------------------------------------------------------  114 (231)
T 1vbf_A           92 V---DKVVSVEINEKMYNYASKLLSY------------------------------------------------------  114 (231)
T ss_dssp             S---SEEEEEESCHHHHHHHHHHHTT------------------------------------------------------
T ss_pred             c---CEEEEEeCCHHHHHHHHHHHhh------------------------------------------------------
Confidence            4   4688888888777777766654                                                      


Q ss_pred             HHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCCCcceeeeEEee
Q psy7837         169 AMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKF  248 (299)
Q Consensus       169 a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~  248 (299)
                                  ..  +++++.+|+....+..++||+|+++.+++++.+++.++|+|||++++..++.. ...+..+.+ 
T Consensus       115 ------------~~--~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~pgG~l~~~~~~~~-~~~~~~~~~-  178 (231)
T 1vbf_A          115 ------------YN--NIKLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGVGR-VQKLYKVIK-  178 (231)
T ss_dssp             ------------CS--SEEEEESCGGGCCGGGCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEEECSSS-SEEEEEEEC-
T ss_pred             ------------cC--CeEEEECCcccccccCCCccEEEECCcHHHHHHHHHHHcCCCcEEEEEEcCCC-ccEEEEEEE-
Confidence                        22  89999999887444457899999999999999999999999999999987664 344555555 


Q ss_pred             cCCceEEEEecceecccccccc
Q psy7837         249 VNGSVKTTVIHPHVYIHELKSL  270 (299)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~  270 (299)
                      ..+.+....+.+..|. |+...
T Consensus       179 ~~~~~~~~~~~~~~~~-~~~~~  199 (231)
T 1vbf_A          179 KGNSPSLENLGEVMFG-RIGGL  199 (231)
T ss_dssp             CTTSCEEEEEEEECCC-BCCST
T ss_pred             cCCeeEEEEeccEEEE-EcCCc
Confidence            3455777777787787 66544

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.64  E-value=5.7e-15  Score=122.34  Aligned_cols=105  Identities=19%  Similarity=0.195  Sum_probs=90.0

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCC-CeEEEEcCCCCCCCCCCCeeEE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAE-NFEFVCADGRRGYPDAAPYDVI  206 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~v  206 (299)
                      ...++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++++.     .+.. +++++.+|+........+||+|
T Consensus        52 ~~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~-----~g~~~~v~~~~~d~~~~~~~~~~~D~v  126 (204)
T 3njr_A           52 APRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDT-----YGLSPRMRAVQGTAPAALADLPLPEAV  126 (204)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----TTCTTTEEEEESCTTGGGTTSCCCSEE
T ss_pred             CCCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH-----cCCCCCEEEEeCchhhhcccCCCCCEE
Confidence            456789999999999999999999999999999999999999999987     3444 8999999998744444679999


Q ss_pred             Eecchhhh-HHHHHHHhccCCcEEEEEecCCC
Q psy7837         207 YISQAIRD-IPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       207 ~~~~~~~~-~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      +++..... +.+++.++|+|||++++......
T Consensus       127 ~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  158 (204)
T 3njr_A          127 FIGGGGSQALYDRLWEWLAPGTRIVANAVTLE  158 (204)
T ss_dssp             EECSCCCHHHHHHHHHHSCTTCEEEEEECSHH
T ss_pred             EECCcccHHHHHHHHHhcCCCcEEEEEecCcc
Confidence            99876533 78899999999999999887643

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.63  E-value=1.6e-15  Score=130.38  Aligned_cols=115  Identities=16%  Similarity=0.222  Sum_probs=89.7

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCC
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGIS-GKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYG  132 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~-g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~  132 (299)
                      +..+...+...+++|.+|||+|||+|..+..+++.+... .+++|+|+++.|++.|++++...                 
T Consensus        57 ~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~-----------------  119 (261)
T 4gek_A           57 ISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY-----------------  119 (261)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTS-----------------
T ss_pred             HHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhh-----------------
Confidence            344444445568999999999999999999999887653 37888888888888877777652                 


Q ss_pred             CeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchh
Q psy7837         133 SKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAI  212 (299)
Q Consensus       133 ~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~  212 (299)
                                                                      ....+++++++|+.....  +.||+|+++.++
T Consensus       120 ------------------------------------------------~~~~~v~~~~~D~~~~~~--~~~d~v~~~~~l  149 (261)
T 4gek_A          120 ------------------------------------------------KAPTPVDVIEGDIRDIAI--ENASMVVLNFTL  149 (261)
T ss_dssp             ------------------------------------------------CCSSCEEEEESCTTTCCC--CSEEEEEEESCG
T ss_pred             ------------------------------------------------ccCceEEEeecccccccc--cccccceeeeee
Confidence                                                            345689999999987544  459999999887


Q ss_pred             hhH--------HHHHHHhccCCcEEEEEecC
Q psy7837         213 RDI--------PWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       213 ~~~--------~~~~~~~L~~gG~lv~~~~~  235 (299)
                      +++        .++++++|||||.+++....
T Consensus       150 ~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~  180 (261)
T 4gek_A          150 QFLEPSERQALLDKIYQGLNPGGALVLSEKF  180 (261)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             eecCchhHhHHHHHHHHHcCCCcEEEEEecc
Confidence            643        46899999999999997654

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.62  E-value=1.4e-14  Score=119.72  Aligned_cols=104  Identities=21%  Similarity=0.226  Sum_probs=89.8

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      ...++.+|||+|||+|.++..+++.+  .+|+++|+++.+++.++++++.     ....+++++.+|+........+||+
T Consensus        37 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~v~~~~~d~~~~~~~~~~~D~  111 (204)
T 3e05_A           37 RLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKK-----FVARNVTLVEAFAPEGLDDLPDPDR  111 (204)
T ss_dssp             TCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHH-----HTCTTEEEEECCTTTTCTTSCCCSE
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-----hCCCcEEEEeCChhhhhhcCCCCCE
Confidence            55778999999999999999999886  7899999999999999999987     3457899999999765554467999


Q ss_pred             EEecchh---hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         206 IYISQAI---RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       206 v~~~~~~---~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      |+++.+.   ..+.+++.++|+|||++++.....
T Consensus       112 i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  145 (204)
T 3e05_A          112 VFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVTL  145 (204)
T ss_dssp             EEESCCTTCHHHHHHHHHHHCCTTCEEEEEECBH
T ss_pred             EEECCCCcCHHHHHHHHHHhcCCCeEEEEEeccc
Confidence            9999874   556689999999999999987653

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.61  E-value=4.6e-15  Score=124.55  Aligned_cols=115  Identities=23%  Similarity=0.293  Sum_probs=90.8

Q ss_pred             chHHHHHHHHhc-cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccC
Q psy7837          52 SDHCLVLELLSG-HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLV  130 (299)
Q Consensus        52 ~~~~~~~~~l~~-~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~  130 (299)
                      .+.+.++..|.. .++||++|||+|||+|+++..+++.+|++|+|+++|+++.+++.+++....                
T Consensus        61 klaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~----------------  124 (233)
T 4df3_A           61 KLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD----------------  124 (233)
T ss_dssp             HHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT----------------
T ss_pred             HHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh----------------
Confidence            344555544432 379999999999999999999999999999999999999999887765543                


Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC---CCCCCCeeEEE
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG---YPDAAPYDVIY  207 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~fD~v~  207 (299)
                                                                          ..|+..+.+|....   .....++|+|+
T Consensus       125 ----------------------------------------------------~~ni~~V~~d~~~p~~~~~~~~~vDvVf  152 (233)
T 4df3_A          125 ----------------------------------------------------RRNIFPILGDARFPEKYRHLVEGVDGLY  152 (233)
T ss_dssp             ----------------------------------------------------CTTEEEEESCTTCGGGGTTTCCCEEEEE
T ss_pred             ----------------------------------------------------hcCeeEEEEeccCccccccccceEEEEE
Confidence                                                                35888898887642   23347899999


Q ss_pred             ecchhhh----HHHHHHHhccCCcEEEEEec
Q psy7837         208 ISQAIRD----IPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       208 ~~~~~~~----~~~~~~~~L~~gG~lv~~~~  234 (299)
                      ++...++    +..++.+.|||||++++++.
T Consensus       153 ~d~~~~~~~~~~l~~~~r~LKpGG~lvI~ik  183 (233)
T 4df3_A          153 ADVAQPEQAAIVVRNARFFLRDGGYMLMAIK  183 (233)
T ss_dssp             ECCCCTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EeccCChhHHHHHHHHHHhccCCCEEEEEEe
Confidence            8877654    45688899999999999753

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.61  E-value=1.4e-15  Score=125.86  Aligned_cols=105  Identities=17%  Similarity=0.121  Sum_probs=81.9

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCC-------cccCCCCeEEEEcCCCCCCCCC-
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAP-------AIALAENFEFVCADGRRGYPDA-  200 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~-------~~~~~~~v~~~~~d~~~~~~~~-  200 (299)
                      +.++.+|||+|||+|..+..+++.|.+|+|+|+|+.|++.|+++......       ......+++++++|+....... 
T Consensus        20 ~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~   99 (203)
T 1pjz_A           20 VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI   99 (203)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred             cCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccC
Confidence            45788999999999999999999999999999999999999987642000       0001358999999998765443 


Q ss_pred             CCeeEEEecchhhhH--------HHHHHHhccCCcEEEEEe
Q psy7837         201 APYDVIYISQAIRDI--------PWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       201 ~~fD~v~~~~~~~~~--------~~~~~~~L~~gG~lv~~~  233 (299)
                      ++||+|++..+++++        .+++.++|||||++++.+
T Consensus       100 ~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~  140 (203)
T 1pjz_A          100 GHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT  140 (203)
T ss_dssp             HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             CCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            689999987776543        357899999999855443

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.60  E-value=9.2e-15  Score=124.87  Aligned_cols=104  Identities=23%  Similarity=0.241  Sum_probs=88.6

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCee
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYD  204 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  204 (299)
                      ...+.++.+|||+|||+|.++..+++. +.+|+++|+++.+++.++++++..    +...+++++++|+..... .++||
T Consensus        31 ~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~v~~~~~d~~~~~~-~~~fD  105 (256)
T 1nkv_A           31 VLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEEL----GVSERVHFIHNDAAGYVA-NEKCD  105 (256)
T ss_dssp             HTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHT----TCTTTEEEEESCCTTCCC-SSCEE
T ss_pred             hcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc----CCCcceEEEECChHhCCc-CCCCC
Confidence            345678899999999999999999876 789999999999999999998763    233589999999987655 57899


Q ss_pred             EEEecchhhhH------HHHHHHhccCCcEEEEEec
Q psy7837         205 VIYISQAIRDI------PWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       205 ~v~~~~~~~~~------~~~~~~~L~~gG~lv~~~~  234 (299)
                      +|++..+++++      .+++.++|||||++++..+
T Consensus       106 ~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  141 (256)
T 1nkv_A          106 VAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEP  141 (256)
T ss_dssp             EEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             EEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecC
Confidence            99998877654      5789999999999999764

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.60  E-value=7.3e-15  Score=125.95  Aligned_cols=102  Identities=23%  Similarity=0.285  Sum_probs=87.8

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      ...++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.++++++.     ....++.++.+|+.....+.++||+|+
T Consensus        34 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~~v~~~~~d~~~l~~~~~~fD~V~  108 (260)
T 1vl5_A           34 ALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEG-----NGHQQVEYVQGDAEQMPFTDERFHIVT  108 (260)
T ss_dssp             TCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHH-----TTCCSEEEEECCC-CCCSCTTCEEEEE
T ss_pred             CCCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHh-----cCCCceEEEEecHHhCCCCCCCEEEEE
Confidence            446789999999999999999999988999999999999999999877     345689999999987655567899999


Q ss_pred             ecchhhh------HHHHHHHhccCCcEEEEEec
Q psy7837         208 ISQAIRD------IPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       208 ~~~~~~~------~~~~~~~~L~~gG~lv~~~~  234 (299)
                      +..++++      +.+++.++|||||.+++...
T Consensus       109 ~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~  141 (260)
T 1vl5_A          109 CRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDN  141 (260)
T ss_dssp             EESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence            9988865      44689999999999999743

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.60  E-value=1.1e-14  Score=118.24  Aligned_cols=103  Identities=21%  Similarity=0.216  Sum_probs=82.8

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-CCCCCeeEE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-PDAAPYDVI  206 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v  206 (299)
                      .+.++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.++++++.     ....++++++.|..... ...++||+|
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~-----~~~~~v~~~~~~~~~l~~~~~~~fD~v   93 (185)
T 3mti_A           19 VLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSD-----LGIENTELILDGHENLDHYVREPIRAA   93 (185)
T ss_dssp             TCCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHH-----HTCCCEEEEESCGGGGGGTCCSCEEEE
T ss_pred             hCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHH-----cCCCcEEEEeCcHHHHHhhccCCcCEE
Confidence            456789999999999999999999999999999999999999999987     34478999997765421 124689999


Q ss_pred             Eecchh-h--------------hHHHHHHHhccCCcEEEEEecC
Q psy7837         207 YISQAI-R--------------DIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       207 ~~~~~~-~--------------~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      +++... +              ...+++.++|||||++++....
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  137 (185)
T 3mti_A           94 IFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY  137 (185)
T ss_dssp             EEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             EEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence            987321 1              2336889999999999998754

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.59  E-value=8.1e-15  Score=130.61  Aligned_cols=146  Identities=21%  Similarity=0.267  Sum_probs=111.4

Q ss_pred             cccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          34 TLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        34 ~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      .|.+....+..++.+..|.....+++.+.  +.+|.+|||+|||+|+++..+++.+++.++++++|+++.+++.+++++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~  151 (336)
T 2b25_A           74 ALEDYVVLMKRGTAITFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYK  151 (336)
T ss_dssp             CHHHHHHHSCCSSCCCCHHHHHHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHH
T ss_pred             CHHHHhhhhcCCCcccCHHHHHHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Confidence            45556667888899999998889998886  8999999999999999999999998888899999999999999998887


Q ss_pred             HhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCC
Q psy7837         114 AKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADG  193 (299)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  193 (299)
                      ....                                                      ....+.- .....+++++.+|+
T Consensus       152 ~~~~------------------------------------------------------~~~ln~~-~~~~~~v~~~~~d~  176 (336)
T 2b25_A          152 HWRD------------------------------------------------------SWKLSHV-EEWPDNVDFIHKDI  176 (336)
T ss_dssp             HHHH------------------------------------------------------HHTTTCS-SCCCCCEEEEESCT
T ss_pred             Hhhc------------------------------------------------------ccccccc-cccCCceEEEECCh
Confidence            5200                                                      0000000 00236899999999


Q ss_pred             CCCC--CCCCCeeEEEecchhhh-HHHHHHHhccCCcEEEEEecCC
Q psy7837         194 RRGY--PDAAPYDVIYISQAIRD-IPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       194 ~~~~--~~~~~fD~v~~~~~~~~-~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ....  ...++||+|+++....+ +.+++.++|+|||.+++..+..
T Consensus       177 ~~~~~~~~~~~fD~V~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  222 (336)
T 2b25_A          177 SGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNI  222 (336)
T ss_dssp             TCCC-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred             HHcccccCCCCeeEEEECCCCHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            8753  23467999999876544 5789999999999999987653

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.59  E-value=2.1e-14  Score=124.24  Aligned_cols=104  Identities=16%  Similarity=0.217  Sum_probs=87.4

Q ss_pred             hhcccCCCCeEEEEcCCCcHHH-HHHHH-cCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCC
Q psy7837         125 FYGHLVYGSKVLDIGSGSGYLS-ALFAY-MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAP  202 (299)
Q Consensus       125 ~~~~~~~~~~vLDiG~G~G~~~-~~la~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  202 (299)
                      .++.+.++.+|||||||+|.++ ..+++ .+++|+++|+++.+++.|+++++..     +..+++++++|+....  .++
T Consensus       116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~-----gl~~v~~v~gDa~~l~--d~~  188 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGL-----GVDGVNVITGDETVID--GLE  188 (298)
T ss_dssp             HHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHH-----TCCSEEEEESCGGGGG--GCC
T ss_pred             HHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhc-----CCCCeEEEECchhhCC--CCC
Confidence            3567899999999999998766 45565 4899999999999999999999873     3489999999998743  478


Q ss_pred             eeEEEecchhh---hHHHHHHHhccCCcEEEEEecC
Q psy7837         203 YDVIYISQAIR---DIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       203 fD~v~~~~~~~---~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ||+|++.....   .+.+++.++|||||++++....
T Consensus       189 FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~~  224 (298)
T 3fpf_A          189 FDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTYT  224 (298)
T ss_dssp             CSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             cCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence            99999877654   5778999999999999998754

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.58  E-value=6.4e-15  Score=125.93  Aligned_cols=104  Identities=14%  Similarity=0.061  Sum_probs=81.2

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhc-------C-Ccc----cCCCCeEEEEcCCCCCC
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRG-------A-PAI----ALAENFEFVCADGRRGY  197 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~-------~-~~~----~~~~~v~~~~~d~~~~~  197 (299)
                      .++.+|||+|||+|..+..+++.|.+|+|+|+|+.+++.|+++....       . ...    ....+++++++|+....
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~  146 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLP  146 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGG
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCC
Confidence            46889999999999999999999999999999999999998765310       0 000    01358999999998754


Q ss_pred             CCC-CCeeEEEecchhhh--------HHHHHHHhccCCcEEEEEe
Q psy7837         198 PDA-APYDVIYISQAIRD--------IPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       198 ~~~-~~fD~v~~~~~~~~--------~~~~~~~~L~~gG~lv~~~  233 (299)
                      ... ++||+|++..++.+        +.+++.++|||||++++.+
T Consensus       147 ~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~  191 (252)
T 2gb4_A          147 RANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAV  191 (252)
T ss_dssp             GGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            432 78999998777643        3457899999999997543

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.58  E-value=2.8e-14  Score=122.85  Aligned_cols=108  Identities=20%  Similarity=0.211  Sum_probs=90.9

Q ss_pred             hhhcccCCCCeEEEEcCCCcHHHHHHHHcC-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCC
Q psy7837         124 NFYGHLVYGSKVLDIGSGSGYLSALFAYMG-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAP  202 (299)
Q Consensus       124 ~~~~~~~~~~~vLDiG~G~G~~~~~la~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  202 (299)
                      ..+..+.++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.++++++..    +...+++++++|+.......++
T Consensus        39 ~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~~v~~~~~d~~~~~~~~~~  114 (267)
T 3kkz_A           39 SFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQS----GLQNRVTGIVGSMDDLPFRNEE  114 (267)
T ss_dssp             TTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHT----TCTTTEEEEECCTTSCCCCTTC
T ss_pred             HhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHc----CCCcCcEEEEcChhhCCCCCCC
Confidence            334456789999999999999999999885 48999999999999999998873    3446799999999876555688


Q ss_pred             eeEEEecchhhhH-----HHHHHHhccCCcEEEEEecC
Q psy7837         203 YDVIYISQAIRDI-----PWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       203 fD~v~~~~~~~~~-----~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ||+|++..+++++     .+++.++|||||.+++....
T Consensus       115 fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  152 (267)
T 3kkz_A          115 LDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSECS  152 (267)
T ss_dssp             EEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred             EEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEee
Confidence            9999999987654     46899999999999998653

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.58  E-value=2.6e-14  Score=115.09  Aligned_cols=106  Identities=19%  Similarity=0.226  Sum_probs=87.5

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCC-CCe
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDA-APY  203 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~f  203 (299)
                      ....++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.++++++.+    +...++ ++.+|.....+.. ++|
T Consensus        21 ~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~----~~~~~~-~~~~d~~~~~~~~~~~~   95 (178)
T 3hm2_A           21 LAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINL----GVSDRI-AVQQGAPRAFDDVPDNP   95 (178)
T ss_dssp             HCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTT----TCTTSE-EEECCTTGGGGGCCSCC
T ss_pred             hcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHh----CCCCCE-EEecchHhhhhccCCCC
Confidence            35677889999999999999999987  678999999999999999999873    223378 8888886544332 689


Q ss_pred             eEEEecchhhh--HHHHHHHhccCCcEEEEEecCCC
Q psy7837         204 DVIYISQAIRD--IPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       204 D~v~~~~~~~~--~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      |+|+++.++++  +.+++.++|+|||++++......
T Consensus        96 D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  131 (178)
T 3hm2_A           96 DVIFIGGGLTAPGVFAAAWKRLPVGGRLVANAVTVE  131 (178)
T ss_dssp             SEEEECC-TTCTTHHHHHHHTCCTTCEEEEEECSHH
T ss_pred             CEEEECCcccHHHHHHHHHHhcCCCCEEEEEeeccc
Confidence            99999998876  78899999999999999876543

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.57  E-value=2.6e-14  Score=122.10  Aligned_cols=109  Identities=18%  Similarity=0.194  Sum_probs=91.2

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCC
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAA  201 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  201 (299)
                      +..+..+.++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++++..    +...+++++++|+.......+
T Consensus        38 l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~~~d~~~~~~~~~  113 (257)
T 3f4k_A           38 VSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKA----NCADRVKGITGSMDNLPFQNE  113 (257)
T ss_dssp             HTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHT----TCTTTEEEEECCTTSCSSCTT
T ss_pred             HHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHc----CCCCceEEEECChhhCCCCCC
Confidence            33445667889999999999999999998854 9999999999999999998873    334569999999987655568


Q ss_pred             CeeEEEecchhhh-----HHHHHHHhccCCcEEEEEecC
Q psy7837         202 PYDVIYISQAIRD-----IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       202 ~fD~v~~~~~~~~-----~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      +||+|++..++++     +.+++.++|+|||++++....
T Consensus       114 ~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~  152 (257)
T 3f4k_A          114 ELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEAS  152 (257)
T ss_dssp             CEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             CEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEee
Confidence            8999999888765     457899999999999998743

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.57  E-value=2.4e-14  Score=121.32  Aligned_cols=108  Identities=19%  Similarity=0.216  Sum_probs=91.9

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCC
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAP  202 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  202 (299)
                      +.....+.++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++++.     ....++.++.+|+.......++
T Consensus        13 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~v~~~~~d~~~~~~~~~~   87 (239)
T 1xxl_A           13 MIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQE-----KGVENVRFQQGTAESLPFPDDS   87 (239)
T ss_dssp             HHHHHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHH-----HTCCSEEEEECBTTBCCSCTTC
T ss_pred             HHHHhCcCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHH-----cCCCCeEEEecccccCCCCCCc
Confidence            33445667899999999999999999999999999999999999999999877     3556899999999876555678


Q ss_pred             eeEEEecchhhh------HHHHHHHhccCCcEEEEEecC
Q psy7837         203 YDVIYISQAIRD------IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       203 fD~v~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ||+|++..++++      +.+++.++|+|||.+++....
T Consensus        88 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  126 (239)
T 1xxl_A           88 FDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHY  126 (239)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence            999999988754      346899999999999997543

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.57  E-value=2.4e-14  Score=122.35  Aligned_cols=125  Identities=28%  Similarity=0.286  Sum_probs=102.2

Q ss_pred             cccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHH
Q psy7837          44 HNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRI  123 (299)
Q Consensus        44 ~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~  123 (299)
                      .......|.....+++.+.  +.++.+|||+|||+|.++..+++.+++.++++++|+++.+++.+++++..         
T Consensus        75 ~~~~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~---------  143 (258)
T 2pwy_A           75 RSATPTYPKDASAMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRA---------  143 (258)
T ss_dssp             CSSCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH---------
T ss_pred             cccccccchHHHHHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH---------
Confidence            3445566666677777765  88999999999999999999999987778899999999999888887766         


Q ss_pred             hhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCccc-CCCCeEEEEcCCCCCCCCCCC
Q psy7837         124 NFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIA-LAENFEFVCADGRRGYPDAAP  202 (299)
Q Consensus       124 ~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~  202 (299)
                                                                               . +..+++++.+|+.....+.++
T Consensus       144 ---------------------------------------------------------~~g~~~v~~~~~d~~~~~~~~~~  166 (258)
T 2pwy_A          144 ---------------------------------------------------------FWQVENVRFHLGKLEEAELEEAA  166 (258)
T ss_dssp             ---------------------------------------------------------HCCCCCEEEEESCGGGCCCCTTC
T ss_pred             ---------------------------------------------------------hcCCCCEEEEECchhhcCCCCCC
Confidence                                                                     3 346899999998876344468


Q ss_pred             eeEEEecchhh-hHHHHHHHhccCCcEEEEEecCC
Q psy7837         203 YDVIYISQAIR-DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       203 fD~v~~~~~~~-~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ||+|+++..-. .+.+++.++|+|||++++..+..
T Consensus       167 ~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  201 (258)
T 2pwy_A          167 YDGVALDLMEPWKVLEKAALALKPDRFLVAYLPNI  201 (258)
T ss_dssp             EEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESCH
T ss_pred             cCEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            99999976543 67789999999999999998765

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.56  E-value=1.3e-14  Score=124.36  Aligned_cols=95  Identities=19%  Similarity=0.131  Sum_probs=82.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQ  210 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~  210 (299)
                      .+.+|||||||+|.++..+++.+.+|+++|+|+.|++.|++           ..++.++++|+.....+.++||+|++..
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~-----------~~~v~~~~~~~e~~~~~~~sfD~v~~~~  107 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALR-----------HPRVTYAVAPAEDTGLPPASVDVAIAAQ  107 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCC-----------CTTEEEEECCTTCCCCCSSCEEEEEECS
T ss_pred             CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhh-----------cCCceeehhhhhhhcccCCcccEEEEee
Confidence            45799999999999999999999999999999999987642           3589999999998777778999999999


Q ss_pred             hhhh-----HHHHHHHhccCCcEEEEEecCC
Q psy7837         211 AIRD-----IPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       211 ~~~~-----~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ++++     ...++.++|||||+|++.....
T Consensus       108 ~~h~~~~~~~~~e~~rvLkpgG~l~~~~~~~  138 (257)
T 4hg2_A          108 AMHWFDLDRFWAELRRVARPGAVFAAVTYGL  138 (257)
T ss_dssp             CCTTCCHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             ehhHhhHHHHHHHHHHHcCCCCEEEEEECCC
Confidence            8865     3468999999999999876543

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.56  E-value=1.5e-14  Score=120.39  Aligned_cols=104  Identities=18%  Similarity=0.217  Sum_probs=87.8

Q ss_pred             hhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCe
Q psy7837         124 NFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPY  203 (299)
Q Consensus       124 ~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  203 (299)
                      .......++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++..       ..+++++++|+.... ..++|
T Consensus        44 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~~~~-~~~~f  115 (216)
T 3ofk_A           44 RLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKR-------WSHISWAATDILQFS-TAELF  115 (216)
T ss_dssp             HHHTTTSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTT-------CSSEEEEECCTTTCC-CSCCE
T ss_pred             HHHcccCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhccc-------CCCeEEEEcchhhCC-CCCCc
Confidence            3344556788999999999999999999998999999999999999998755       238999999998765 45789


Q ss_pred             eEEEecchhhhH---------HHHHHHhccCCcEEEEEecC
Q psy7837         204 DVIYISQAIRDI---------PWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       204 D~v~~~~~~~~~---------~~~~~~~L~~gG~lv~~~~~  235 (299)
                      |+|++..+++++         .+++.++|+|||.+++..+.
T Consensus       116 D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  156 (216)
T 3ofk_A          116 DLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR  156 (216)
T ss_dssp             EEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             cEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence            999999877543         45788999999999997654

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.56  E-value=5.1e-14  Score=123.47  Aligned_cols=106  Identities=18%  Similarity=0.031  Sum_probs=90.4

Q ss_pred             hhhcccCCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCC
Q psy7837         124 NFYGHLVYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAP  202 (299)
Q Consensus       124 ~~~~~~~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  202 (299)
                      .....+.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...    +...+++++.+|+...   .++
T Consensus        65 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~~v~~~~~d~~~~---~~~  137 (302)
T 3hem_A           65 LDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEV----DSPRRKEVRIQGWEEF---DEP  137 (302)
T ss_dssp             HHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHS----CCSSCEEEEECCGGGC---CCC
T ss_pred             HHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc----CCCCceEEEECCHHHc---CCC
Confidence            33445678999999999999999999988 899999999999999999998873    3445899999999775   478


Q ss_pred             eeEEEecchhhhH---------------HHHHHHhccCCcEEEEEecCC
Q psy7837         203 YDVIYISQAIRDI---------------PWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       203 fD~v~~~~~~~~~---------------~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ||+|++..+++++               .+++.++|||||++++.....
T Consensus       138 fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  186 (302)
T 3hem_A          138 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI  186 (302)
T ss_dssp             CSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEEC
T ss_pred             ccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEec
Confidence            9999999888666               468999999999999987644

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.56  E-value=2.6e-14  Score=122.53  Aligned_cols=103  Identities=26%  Similarity=0.222  Sum_probs=89.1

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCee
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYD  204 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  204 (299)
                      ...+.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++..     .  .+++++++|+.....+.++||
T Consensus        50 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~--~~~~~~~~d~~~~~~~~~~fD  122 (266)
T 3ujc_A           50 DIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSG-----N--NKIIFEANDILTKEFPENNFD  122 (266)
T ss_dssp             TCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCS-----C--TTEEEEECCTTTCCCCTTCEE
T ss_pred             hcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhc-----C--CCeEEEECccccCCCCCCcEE
Confidence            345678899999999999999999987 89999999999999999988654     2  789999999987655568899


Q ss_pred             EEEecchhhhH--------HHHHHHhccCCcEEEEEecC
Q psy7837         205 VIYISQAIRDI--------PWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       205 ~v~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~~  235 (299)
                      +|++..+++++        .+++.++|+|||.+++....
T Consensus       123 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  161 (266)
T 3ujc_A          123 LIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYC  161 (266)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            99999888776        35899999999999998753

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.56  E-value=5.6e-14  Score=117.13  Aligned_cols=113  Identities=25%  Similarity=0.327  Sum_probs=94.7

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCe
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSK  134 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  134 (299)
                      ..+++.+.  +.++.+|||+|||+|.++..+++..++..+++++|+++.+++.+++.+..                    
T Consensus        27 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~--------------------   84 (219)
T 3dh0_A           27 EKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNK--------------------   84 (219)
T ss_dssp             HHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH--------------------
T ss_pred             HHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH--------------------
Confidence            56677765  78899999999999999999999887777899999999998888888766                    


Q ss_pred             EEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhh
Q psy7837         135 VLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRD  214 (299)
Q Consensus       135 vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~  214 (299)
                                                                    ....+++++.+|+.......++||+|++..++++
T Consensus        85 ----------------------------------------------~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  118 (219)
T 3dh0_A           85 ----------------------------------------------LGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFHE  118 (219)
T ss_dssp             ----------------------------------------------HTCTTEEEEECBTTBCSSCSSCEEEEEEESCGGG
T ss_pred             ----------------------------------------------cCCCcEEEEecccccCCCCCCCeeEEEeehhhhh
Confidence                                                          2445899999999876555678999999988764


Q ss_pred             ------HHHHHHHhccCCcEEEEEecC
Q psy7837         215 ------IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       215 ------~~~~~~~~L~~gG~lv~~~~~  235 (299)
                            +.+++.++|+|||.+++....
T Consensus       119 ~~~~~~~l~~~~~~LkpgG~l~i~~~~  145 (219)
T 3dh0_A          119 LSEPLKFLEELKRVAKPFAYLAIIDWK  145 (219)
T ss_dssp             CSSHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cCCHHHHHHHHHHHhCCCeEEEEEEec
Confidence                  446899999999999998654

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.55  E-value=4.1e-14  Score=122.61  Aligned_cols=129  Identities=22%  Similarity=0.257  Sum_probs=106.9

Q ss_pred             cccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHH
Q psy7837          40 HNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETY  119 (299)
Q Consensus        40 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~  119 (299)
                      ..+..+.....|.....+++.+.  +.++.+|||+|||+|.++..+++.+++.++++++|+++.+++.+++++..     
T Consensus        74 ~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-----  146 (280)
T 1i9g_A           74 MSMPRGPQVIYPKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSG-----  146 (280)
T ss_dssp             TTSCSCSCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH-----
T ss_pred             hhccccceeecHHHHHHHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-----
Confidence            34556666778888888888776  89999999999999999999999887778999999999999998888765     


Q ss_pred             HHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCccc-C--CCCeEEEEcCCCCC
Q psy7837         120 IKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIA-L--AENFEFVCADGRRG  196 (299)
Q Consensus       120 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~-~--~~~v~~~~~d~~~~  196 (299)
                                                                                   . +  ..+++++.+|+...
T Consensus       147 -------------------------------------------------------------~~g~~~~~v~~~~~d~~~~  165 (280)
T 1i9g_A          147 -------------------------------------------------------------CYGQPPDNWRLVVSDLADS  165 (280)
T ss_dssp             -------------------------------------------------------------HHTSCCTTEEEECSCGGGC
T ss_pred             -------------------------------------------------------------hcCCCCCcEEEEECchHhc
Confidence                                                                         2 2  46899999998876


Q ss_pred             CCCCCCeeEEEecchhh-hHHHHHHHhccCCcEEEEEecCC
Q psy7837         197 YPDAAPYDVIYISQAIR-DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       197 ~~~~~~fD~v~~~~~~~-~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ..+.++||+|+++..-. .+.+++.++|+|||++++.++..
T Consensus       166 ~~~~~~~D~v~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  206 (280)
T 1i9g_A          166 ELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATV  206 (280)
T ss_dssp             CCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             CCCCCceeEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            54457899999976543 57789999999999999998764

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.55  E-value=4.8e-14  Score=124.29  Aligned_cols=105  Identities=15%  Similarity=0.140  Sum_probs=90.1

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      ..+.++.+|||+|||+|.++..+++. +.+|+++|+++.+++.++++++.+    +...+++++.+|+.......++||+
T Consensus       113 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~~v~~~~~d~~~~~~~~~~fD~  188 (312)
T 3vc1_A          113 GQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRAREL----RIDDHVRSRVCNMLDTPFDKGAVTA  188 (312)
T ss_dssp             CCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT----TCTTTEEEEECCTTSCCCCTTCEEE
T ss_pred             ccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc----CCCCceEEEECChhcCCCCCCCEeE
Confidence            33778999999999999999999988 899999999999999999999873    3445899999999876555688999


Q ss_pred             EEecchhhh-----HHHHHHHhccCCcEEEEEecC
Q psy7837         206 IYISQAIRD-----IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       206 v~~~~~~~~-----~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      |++..++++     +.+++.++|||||++++....
T Consensus       189 V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~~  223 (312)
T 3vc1_A          189 SWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGC  223 (312)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEcc
Confidence            999887654     456899999999999998754

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.55  E-value=4.4e-14  Score=115.29  Aligned_cols=103  Identities=17%  Similarity=0.090  Sum_probs=85.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCCCCeeEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDAAPYDVI  206 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v  206 (299)
                      .++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++++.+     ...+++++++|+....  ...++||+|
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~fD~i  117 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEAL-----GLSGATLRRGAVAAVVAAGTTSPVDLV  117 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHH-----TCSCEEEEESCHHHHHHHCCSSCCSEE
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc-----CCCceEEEEccHHHHHhhccCCCccEE
Confidence            4688999999999999998888765 6999999999999999999883     4478999999987532  224789999


Q ss_pred             Eecchhhh-------HHHHHHH--hccCCcEEEEEecCCC
Q psy7837         207 YISQAIRD-------IPWHIVD--QLKLGGRMLFIKGHED  237 (299)
Q Consensus       207 ~~~~~~~~-------~~~~~~~--~L~~gG~lv~~~~~~~  237 (299)
                      +++.++.+       +.+.+.+  +|+|||.+++......
T Consensus       118 ~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~  157 (189)
T 3p9n_A          118 LADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATTC  157 (189)
T ss_dssp             EECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred             EECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence            99987654       3356777  9999999999886543

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.55  E-value=6.3e-14  Score=114.99  Aligned_cols=107  Identities=16%  Similarity=0.249  Sum_probs=88.2

Q ss_pred             cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCc
Q psy7837          64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSG  143 (299)
Q Consensus        64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G  143 (299)
                      .++++.+|||+|||+|.++..+++.+++.++++++|+++.+++.+++++...                            
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------------------------   70 (197)
T 3eey_A           19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDL----------------------------   70 (197)
T ss_dssp             HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHT----------------------------
T ss_pred             cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----------------------------
Confidence            4789999999999999999999999877778999999999999988888761                            


Q ss_pred             HHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-CCCCCeeEEEecchh----------
Q psy7837         144 YLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-PDAAPYDVIYISQAI----------  212 (299)
Q Consensus       144 ~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~~----------  212 (299)
                                                           +...+++++++|+.... ...++||+|+++.++          
T Consensus        71 -------------------------------------~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~  113 (197)
T 3eey_A           71 -------------------------------------NLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSIST  113 (197)
T ss_dssp             -------------------------------------TCGGGEEEECSCGGGGGGTCCSCEEEEEEEESBCTTSCTTCBC
T ss_pred             -------------------------------------CCCCCeEEEECCHHHHhhhccCCceEEEEcCCcccCccccccc
Confidence                                                 22368999999987542 233789999998754          


Q ss_pred             -----hhHHHHHHHhccCCcEEEEEecC
Q psy7837         213 -----RDIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       213 -----~~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                           ..+.+++.++|+|||++++....
T Consensus       114 ~~~~~~~~l~~~~~~Lk~gG~l~~~~~~  141 (197)
T 3eey_A          114 RPETTIQALSKAMELLVTGGIITVVIYY  141 (197)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence                 24668899999999999998643

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.54  E-value=6.6e-14  Score=120.71  Aligned_cols=106  Identities=20%  Similarity=0.271  Sum_probs=89.5

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCee
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYD  204 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  204 (299)
                      ...+.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++++..    +...++.++.+|+.....+.++||
T Consensus        56 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~~~~~~~~d~~~~~~~~~~fD  131 (273)
T 3bus_A           56 LLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAA----GLANRVTFSYADAMDLPFEDASFD  131 (273)
T ss_dssp             HSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHT----TCTTTEEEEECCTTSCCSCTTCEE
T ss_pred             hcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhc----CCCcceEEEECccccCCCCCCCcc
Confidence            345678899999999999999999875 889999999999999999998763    334589999999987655567899


Q ss_pred             EEEecchhhhH------HHHHHHhccCCcEEEEEecC
Q psy7837         205 VIYISQAIRDI------PWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       205 ~v~~~~~~~~~------~~~~~~~L~~gG~lv~~~~~  235 (299)
                      +|++..+++++      .+++.++|||||++++....
T Consensus       132 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  168 (273)
T 3bus_A          132 AVWALESLHHMPDRGRALREMARVLRPGGTVAIADFV  168 (273)
T ss_dssp             EEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             EEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEee
Confidence            99999887654      46899999999999998643

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.54  E-value=1e-13  Score=118.40  Aligned_cols=125  Identities=22%  Similarity=0.314  Sum_probs=102.5

Q ss_pred             cccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHH
Q psy7837          44 HNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRI  123 (299)
Q Consensus        44 ~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~  123 (299)
                      .+.....|.....+++.+.  +.++.+|||+|||+|.++..+++.+++.++++++|+++.+++.+++++...        
T Consensus        72 ~~~~~~~~~~~~~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~--------  141 (255)
T 3mb5_A           72 RGPQIVHPKDAALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWA--------  141 (255)
T ss_dssp             CCSCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHH--------
T ss_pred             cccccccHhHHHHHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHc--------
Confidence            4445556777777777765  889999999999999999999999887889999999999999998888762        


Q ss_pred             hhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCe
Q psy7837         124 NFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPY  203 (299)
Q Consensus       124 ~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  203 (299)
                                                                               +...+++++.+|+..... .++|
T Consensus       142 ---------------------------------------------------------~~~~~v~~~~~d~~~~~~-~~~~  163 (255)
T 3mb5_A          142 ---------------------------------------------------------GFDDRVTIKLKDIYEGIE-EENV  163 (255)
T ss_dssp             ---------------------------------------------------------TCTTTEEEECSCGGGCCC-CCSE
T ss_pred             ---------------------------------------------------------CCCCceEEEECchhhccC-CCCc
Confidence                                                                     233459999999987543 4679


Q ss_pred             eEEEecchhh-hHHHHHHHhccCCcEEEEEecCC
Q psy7837         204 DVIYISQAIR-DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       204 D~v~~~~~~~-~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      |+|+++..-. .+.+++.++|+|||++++..+..
T Consensus       164 D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  197 (255)
T 3mb5_A          164 DHVILDLPQPERVVEHAAKALKPGGFFVAYTPCS  197 (255)
T ss_dssp             EEEEECSSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             CEEEECCCCHHHHHHHHHHHcCCCCEEEEEECCH
Confidence            9999987654 37789999999999999987654

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.54  E-value=4.3e-14  Score=122.13  Aligned_cols=112  Identities=21%  Similarity=0.273  Sum_probs=94.3

Q ss_pred             HHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC
Q psy7837         119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG  196 (299)
Q Consensus       119 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  196 (299)
                      +...+.....+.++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.+++++..     ....+++++.+|+...
T Consensus        25 l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~~~d~~~~   99 (276)
T 3mgg_A           25 LEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEK-----NGIKNVKFLQANIFSL   99 (276)
T ss_dssp             HHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH-----TTCCSEEEEECCGGGC
T ss_pred             HHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-----cCCCCcEEEEcccccC
Confidence            3344555556678999999999999999999988  67899999999999999999887     4556899999999876


Q ss_pred             CCCCCCeeEEEecchhhh------HHHHHHHhccCCcEEEEEecC
Q psy7837         197 YPDAAPYDVIYISQAIRD------IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       197 ~~~~~~fD~v~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ....++||+|++..++++      +.+++.++|+|||.+++..+.
T Consensus       100 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  144 (276)
T 3mgg_A          100 PFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGD  144 (276)
T ss_dssp             CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence            656688999999988754      446899999999999997643

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.54  E-value=9.4e-14  Score=121.34  Aligned_cols=104  Identities=20%  Similarity=0.184  Sum_probs=89.8

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI  206 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  206 (299)
                      .+.++.+|||+|||+|.++..+++. +.+|+++|+++.+++.++++++..    +...+++++.+|+.....+.++||+|
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~~~~~~~~d~~~~~~~~~~fD~v  154 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQA----GLADNITVKYGSFLEIPCEDNSYDFI  154 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHH----TCTTTEEEEECCTTSCSSCTTCEEEE
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhc----CCCcceEEEEcCcccCCCCCCCEeEE
Confidence            5678899999999999999999887 889999999999999999988763    34468999999998765556789999


Q ss_pred             Eecchhhh------HHHHHHHhccCCcEEEEEecC
Q psy7837         207 YISQAIRD------IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       207 ~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ++..++++      +.+++.++|||||++++..+.
T Consensus       155 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  189 (297)
T 2o57_A          155 WSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPM  189 (297)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence            99988755      457899999999999998653

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.54  E-value=5.7e-14  Score=115.94  Aligned_cols=102  Identities=21%  Similarity=0.182  Sum_probs=83.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCC--CCeEEEEcCCCCCCC--CCCC-ee
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALA--ENFEFVCADGRRGYP--DAAP-YD  204 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~--~~~~-fD  204 (299)
                      ++.+|||+|||+|.++..++..+. +|+++|+|+.+++.++++++.+     ..  .+++++.+|+.....  ..++ ||
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-----~~~~~~v~~~~~d~~~~~~~~~~~~~fD  127 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTL-----KCSSEQAEVINQSSLDFLKQPQNQPHFD  127 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHT-----TCCTTTEEEECSCHHHHTTSCCSSCCEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHh-----CCCccceEEEECCHHHHHHhhccCCCCC
Confidence            578999999999999998877764 7999999999999999999873     44  689999999875332  2468 99


Q ss_pred             EEEecchhh-----hHHHHH--HHhccCCcEEEEEecCCC
Q psy7837         205 VIYISQAIR-----DIPWHI--VDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       205 ~v~~~~~~~-----~~~~~~--~~~L~~gG~lv~~~~~~~  237 (299)
                      +|+++.++.     .+.+.+  .++|+|||.+++...+..
T Consensus       128 ~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          128 VVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             EEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             EEEECCCCCCccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            999998842     344555  557999999999887654

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.54  E-value=6e-14  Score=120.12  Aligned_cols=102  Identities=16%  Similarity=0.124  Sum_probs=87.8

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI  206 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  206 (299)
                      ..+.++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.+++++ .     ....++.++.+|+.......++||+|
T Consensus        35 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~-----~~~~~~~~~~~d~~~~~~~~~~fD~v  108 (263)
T 2yqz_A           35 HPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI-A-----GVDRKVQVVQADARAIPLPDESVHGV  108 (263)
T ss_dssp             CCSSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT-T-----TSCTTEEEEESCTTSCCSCTTCEEEE
T ss_pred             cCCCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-h-----ccCCceEEEEcccccCCCCCCCeeEE
Confidence            35677899999999999999999999999999999999999999987 3     35678999999998755556789999


Q ss_pred             EecchhhhH------HHHHHHhccCCcEEEEEec
Q psy7837         207 YISQAIRDI------PWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       207 ~~~~~~~~~------~~~~~~~L~~gG~lv~~~~  234 (299)
                      ++..+++++      .+++.++|+|||.+++...
T Consensus       109 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (263)
T 2yqz_A          109 IVVHLWHLVPDWPKVLAEAIRVLKPGGALLEGWD  142 (263)
T ss_dssp             EEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EECCchhhcCCHHHHHHHHHHHCCCCcEEEEEec
Confidence            999887654      4688999999999999844

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.53  E-value=7.2e-14  Score=117.71  Aligned_cols=103  Identities=18%  Similarity=0.210  Sum_probs=87.4

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCe
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPY  203 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  203 (299)
                      +....++.+|||+|||+|.++..+++.  +.+++++|+++.+++.+++++..       ..+++++++|+...... ++|
T Consensus        39 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~~~~~~-~~f  110 (234)
T 3dtn_A           39 ASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG-------NLKVKYIEADYSKYDFE-EKY  110 (234)
T ss_dssp             CCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCS-------CTTEEEEESCTTTCCCC-SCE
T ss_pred             hhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhcc-------CCCEEEEeCchhccCCC-CCc
Confidence            334667899999999999999999988  78999999999999999998765       22899999999876555 789


Q ss_pred             eEEEecchhhh--------HHHHHHHhccCCcEEEEEecCC
Q psy7837         204 DVIYISQAIRD--------IPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       204 D~v~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      |+|++..++++        +.+++.++|+|||.+++.....
T Consensus       111 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  151 (234)
T 3dtn_A          111 DMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVH  151 (234)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             eEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence            99999988754        3468899999999999987543

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.53  E-value=9e-14  Score=113.88  Aligned_cols=101  Identities=21%  Similarity=0.146  Sum_probs=85.7

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      ...++.+|||+|||+|.++..+++.+.+++++|+++.+++.+++++..     ....+++++.+|+..... .++||+|+
T Consensus        29 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~~~d~~~~~~-~~~~D~v~  102 (199)
T 2xvm_A           29 KVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSI-----ENLDNLHTRVVDLNNLTF-DRQYDFIL  102 (199)
T ss_dssp             TTSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----HTCTTEEEEECCGGGCCC-CCCEEEEE
T ss_pred             hccCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHh-----CCCCCcEEEEcchhhCCC-CCCceEEE
Confidence            345678999999999999999999999999999999999999999876     344579999999887554 57899999


Q ss_pred             ecchhhhH--------HHHHHHhccCCcEEEEEec
Q psy7837         208 ISQAIRDI--------PWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       208 ~~~~~~~~--------~~~~~~~L~~gG~lv~~~~  234 (299)
                      +..+++++        .+++.++|+|||.+++...
T Consensus       103 ~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (199)
T 2xvm_A          103 STVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA  137 (199)
T ss_dssp             EESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence            99877543        4688999999999887653

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.53  E-value=7.1e-14  Score=116.48  Aligned_cols=106  Identities=11%  Similarity=0.104  Sum_probs=82.7

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI  206 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  206 (299)
                      ..++.+|||+|||+|.++..+++.+  .+|+++|+++.+++.++++++.++-......+++++++|+.......++||+|
T Consensus        27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  106 (217)
T 3jwh_A           27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA  106 (217)
T ss_dssp             HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred             hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence            3568899999999999999999985  58999999999999999998762100000128999999987544444789999


Q ss_pred             EecchhhhH--------HHHHHHhccCCcEEEEEec
Q psy7837         207 YISQAIRDI--------PWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       207 ~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~  234 (299)
                      ++..+++++        .+++.++|||||.+++...
T Consensus       107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  142 (217)
T 3jwh_A          107 TVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPN  142 (217)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred             eeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence            999887643        3578899999997766543

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.53  E-value=1.1e-13  Score=116.27  Aligned_cols=118  Identities=24%  Similarity=0.311  Sum_probs=88.2

Q ss_pred             CcchHHHHHHHHh-ccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcc
Q psy7837          50 SPSDHCLVLELLS-GHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGH  128 (299)
Q Consensus        50 ~p~~~~~~~~~l~-~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~  128 (299)
                      ...+.+.+++.+. -.+++|++|||+|||+|+++..+++.++++|+|+++|+++.+++...+....              
T Consensus        58 ~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~--------------  123 (232)
T 3id6_C           58 RSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR--------------  123 (232)
T ss_dssp             TCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH--------------
T ss_pred             HHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--------------
Confidence            3344555555553 2478999999999999999999999999999999999999987654433322              


Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---CCCCCeeE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---PDAAPYDV  205 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~  205 (299)
                                                                            ..|+.++.+|+....   ...++||+
T Consensus       124 ------------------------------------------------------r~nv~~i~~Da~~~~~~~~~~~~~D~  149 (232)
T 3id6_C          124 ------------------------------------------------------RPNIFPLLADARFPQSYKSVVENVDV  149 (232)
T ss_dssp             ------------------------------------------------------CTTEEEEECCTTCGGGTTTTCCCEEE
T ss_pred             ------------------------------------------------------cCCeEEEEcccccchhhhccccceEE
Confidence                                                                  248999999987532   11367999


Q ss_pred             EEecchhhhHH----HHHHHhccCCcEEEEEecC
Q psy7837         206 IYISQAIRDIP----WHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       206 v~~~~~~~~~~----~~~~~~L~~gG~lv~~~~~  235 (299)
                      |+++.+.....    ..+.+.|||||+|++++..
T Consensus       150 I~~d~a~~~~~~il~~~~~~~LkpGG~lvisik~  183 (232)
T 3id6_C          150 LYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKA  183 (232)
T ss_dssp             EEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             EEecCCChhHHHHHHHHHHHhCCCCeEEEEEEcc
Confidence            99998765433    3455699999999998643

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.53  E-value=1.4e-13  Score=115.62  Aligned_cols=103  Identities=23%  Similarity=0.314  Sum_probs=85.9

Q ss_pred             ccCCCCeEEEEcCC-CcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC-CCCCCCee
Q psy7837         128 HLVYGSKVLDIGSG-SGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG-YPDAAPYD  204 (299)
Q Consensus       128 ~~~~~~~vLDiG~G-~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD  204 (299)
                      .+.++.+|||+||| +|.++..+++. +.+|+++|+++.+++.++++++.+     .. +++++++|+... ....++||
T Consensus        52 ~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~-~v~~~~~d~~~~~~~~~~~fD  125 (230)
T 3evz_A           52 FLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERN-----NS-NVRLVKSNGGIIKGVVEGTFD  125 (230)
T ss_dssp             TCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHT-----TC-CCEEEECSSCSSTTTCCSCEE
T ss_pred             hcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHh-----CC-CcEEEeCCchhhhhcccCcee
Confidence            35678999999999 99999999998 899999999999999999999883     33 899999997422 12237899


Q ss_pred             EEEecchh-------------------------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         205 VIYISQAI-------------------------RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       205 ~v~~~~~~-------------------------~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +|+++.++                         ..+.+++.++|+|||++++..+..
T Consensus       126 ~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  182 (230)
T 3evz_A          126 VIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK  182 (230)
T ss_dssp             EEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC
T ss_pred             EEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence            99998764                         345678899999999999987653

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.53  E-value=4.9e-14  Score=119.43  Aligned_cols=100  Identities=16%  Similarity=0.259  Sum_probs=85.8

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      ...++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.++++..        . +++++++|+... ...++||+|+
T Consensus        39 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~--------~-~v~~~~~d~~~~-~~~~~fD~v~  108 (250)
T 2p7i_A           39 PFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK--------D-GITYIHSRFEDA-QLPRRYDNIV  108 (250)
T ss_dssp             GGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSC--------S-CEEEEESCGGGC-CCSSCEEEEE
T ss_pred             hhcCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhh--------C-CeEEEEccHHHc-CcCCcccEEE
Confidence            34578899999999999999999999999999999999999998742        2 899999998876 3457899999


Q ss_pred             ecchhhhH------HHHHH-HhccCCcEEEEEecCCC
Q psy7837         208 ISQAIRDI------PWHIV-DQLKLGGRMLFIKGHED  237 (299)
Q Consensus       208 ~~~~~~~~------~~~~~-~~L~~gG~lv~~~~~~~  237 (299)
                      +..+++++      .+++. ++|||||.+++..++..
T Consensus       109 ~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~  145 (250)
T 2p7i_A          109 LTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNAN  145 (250)
T ss_dssp             EESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred             EhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCChH
Confidence            99988654      46889 99999999999987654

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.53  E-value=5.8e-14  Score=116.61  Aligned_cols=103  Identities=26%  Similarity=0.292  Sum_probs=86.9

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI  206 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  206 (299)
                      ...++ +|||+|||+|.++..+++. +.+++++|+++.+++.++++++..    ....+++++++|+.......++||+|
T Consensus        41 ~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~----~~~~~~~~~~~d~~~~~~~~~~~D~v  115 (219)
T 3dlc_A           41 GITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADA----NLNDRIQIVQGDVHNIPIEDNYADLI  115 (219)
T ss_dssp             CCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHT----TCTTTEEEEECBTTBCSSCTTCEEEE
T ss_pred             CCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhc----cccCceEEEEcCHHHCCCCcccccEE
Confidence            33444 9999999999999999987 778999999999999999998873    33458999999998765556889999


Q ss_pred             Eecchhhh------HHHHHHHhccCCcEEEEEecC
Q psy7837         207 YISQAIRD------IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       207 ~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ++..++++      +.+++.++|+|||.+++....
T Consensus       116 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  150 (219)
T 3dlc_A          116 VSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGF  150 (219)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EECchHhhccCHHHHHHHHHHhCCCCCEEEEEecc
Confidence            99988764      456899999999999998644

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.53  E-value=7.4e-14  Score=119.12  Aligned_cols=101  Identities=23%  Similarity=0.233  Sum_probs=86.6

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      ....++.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++.        ..++.++.+|+.......++||+
T Consensus        40 ~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~~d~~~~~~~~~~fD~  111 (253)
T 3g5l_A           40 LPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT--------SPVVCYEQKAIEDIAIEPDAYNV  111 (253)
T ss_dssp             CCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC--------CTTEEEEECCGGGCCCCTTCEEE
T ss_pred             hhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc--------cCCeEEEEcchhhCCCCCCCeEE
Confidence            3445789999999999999999999987 89999999999999998843        46899999999876555688999


Q ss_pred             EEecchhhh------HHHHHHHhccCCcEEEEEecC
Q psy7837         206 IYISQAIRD------IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       206 v~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      |++..++++      +.+++.++|+|||.+++.+.+
T Consensus       112 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  147 (253)
T 3g5l_A          112 VLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEH  147 (253)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            999998764      346899999999999998654

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.52  E-value=2.5e-13  Score=110.50  Aligned_cols=104  Identities=20%  Similarity=0.199  Sum_probs=88.1

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCC--eEEEEcCCCCCCCCCCCeeE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAEN--FEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~--v~~~~~d~~~~~~~~~~fD~  205 (299)
                      ...++.+|||+|||+|.++..+++.+.+++++|+++.+++.+++++..     ....+  ++++.+|+..... .++||+
T Consensus        49 ~~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~d~~~~~~-~~~~D~  122 (194)
T 1dus_A           49 VVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKL-----NNLDNYDIRVVHSDLYENVK-DRKYNK  122 (194)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHH-----TTCTTSCEEEEECSTTTTCT-TSCEEE
T ss_pred             ccCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHH-----cCCCccceEEEECchhcccc-cCCceE
Confidence            345788999999999999999998888999999999999999999887     34455  9999999887443 468999


Q ss_pred             EEecchhh-------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837         206 IYISQAIR-------DIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       206 v~~~~~~~-------~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      |+++.+++       .+.+++.++|+|||.+++..+...
T Consensus       123 v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  161 (194)
T 1dus_A          123 IITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQ  161 (194)
T ss_dssp             EEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTH
T ss_pred             EEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence            99988754       344688999999999999988753

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.52  E-value=1.5e-13  Score=114.39  Aligned_cols=101  Identities=16%  Similarity=0.184  Sum_probs=85.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCCCCeeEE
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDAAPYDVI  206 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v  206 (299)
                      ++.+|||+|||+|.++..+++.  +.+++++|+++.+++.+++++..     ....++.++.+|+....  ...++||+|
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~-----~~~~~v~~~~~d~~~~~~~~~~~~~D~i  115 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLE-----VGVPNIKLLWVDGSDLTDYFEDGEIDRL  115 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH-----HCCSSEEEEECCSSCGGGTSCTTCCSEE
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHH-----cCCCCEEEEeCCHHHHHhhcCCCCCCEE
Confidence            4789999999999999999887  57899999999999999999987     34579999999998633  344789999


Q ss_pred             Eecchhh--------------hHHHHHHHhccCCcEEEEEecCC
Q psy7837         207 YISQAIR--------------DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       207 ~~~~~~~--------------~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +++.+..              .+.+++.++|+|||.+++.+...
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  159 (214)
T 1yzh_A          116 YLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR  159 (214)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCH
T ss_pred             EEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCH
Confidence            9987652              47788999999999999987543

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.52  E-value=1.3e-13  Score=114.95  Aligned_cols=97  Identities=22%  Similarity=0.251  Sum_probs=84.6

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS  209 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  209 (299)
                      .++.+|||+|||+|.++..+++.+.+++++|+++.+++.+++++.         .+++++.+|+...... ++||+|++.
T Consensus        44 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~d~~~~~~~-~~fD~v~~~  113 (220)
T 3hnr_A           44 KSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP---------KEFSITEGDFLSFEVP-TSIDTIVST  113 (220)
T ss_dssp             TCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC---------TTCCEESCCSSSCCCC-SCCSEEEEE
T ss_pred             cCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC---------CceEEEeCChhhcCCC-CCeEEEEEC
Confidence            468899999999999999999999999999999999999998742         4788999999876555 889999999


Q ss_pred             chhhh--------HHHHHHHhccCCcEEEEEecCC
Q psy7837         210 QAIRD--------IPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       210 ~~~~~--------~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      .++++        +.+++.++|||||.+++..+..
T Consensus       114 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  148 (220)
T 3hnr_A          114 YAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIF  148 (220)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECB
T ss_pred             cchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence            98864        4568899999999999997543

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.52  E-value=1.4e-13  Score=114.43  Aligned_cols=103  Identities=17%  Similarity=0.238  Sum_probs=87.4

Q ss_pred             hhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCe
Q psy7837         124 NFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPY  203 (299)
Q Consensus       124 ~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  203 (299)
                      ..+....++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++.         ...+++++.+|+... ...++|
T Consensus        39 ~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~---------~~~~~~~~~~d~~~~-~~~~~~  108 (218)
T 3ou2_A           39 ERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRH---------GLDNVEFRQQDLFDW-TPDRQW  108 (218)
T ss_dssp             HHHTTTTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGGG---------CCTTEEEEECCTTSC-CCSSCE
T ss_pred             HHHhcCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHhc---------CCCCeEEEecccccC-CCCCce
Confidence            3444567788999999999999999999999999999999999999872         346899999999876 455889


Q ss_pred             eEEEecchhhhH--------HHHHHHhccCCcEEEEEecCC
Q psy7837         204 DVIYISQAIRDI--------PWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       204 D~v~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      |+|++..+++++        .+++.++|+|||.+++.....
T Consensus       109 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  149 (218)
T 3ou2_A          109 DAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTD  149 (218)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             eEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            999999887543        457889999999999998765

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.52  E-value=1e-13  Score=114.57  Aligned_cols=106  Identities=22%  Similarity=0.175  Sum_probs=86.3

Q ss_pred             hhcccCCCCeEEEEcCCCcHHH-HHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCe
Q psy7837         125 FYGHLVYGSKVLDIGSGSGYLS-ALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPY  203 (299)
Q Consensus       125 ~~~~~~~~~~vLDiG~G~G~~~-~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  203 (299)
                      .+....++.+|||+|||+|..+ ..++..+.+|+++|+|+.+++.++++++..      ..++.++++|+.....+.++|
T Consensus        17 ~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~d~~~~~~~~~~f   90 (209)
T 2p8j_A           17 YCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSREN------NFKLNISKGDIRKLPFKDESM   90 (209)
T ss_dssp             HHHHSSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHH------TCCCCEEECCTTSCCSCTTCE
T ss_pred             HHhccCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc------CCceEEEECchhhCCCCCCce
Confidence            3445567899999999999984 455677889999999999999999998762      257889999998755555789


Q ss_pred             eEEEecchhhhH--------HHHHHHhccCCcEEEEEecCC
Q psy7837         204 DVIYISQAIRDI--------PWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       204 D~v~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      |+|++..+++++        .+++.++|+|||.+++.....
T Consensus        91 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  131 (209)
T 2p8j_A           91 SFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTT  131 (209)
T ss_dssp             EEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred             eEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            999998876654        257899999999999987654

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.52  E-value=1.5e-13  Score=114.25  Aligned_cols=101  Identities=21%  Similarity=0.267  Sum_probs=79.4

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY  144 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~  144 (299)
                      +++|++|||+|||+|.++..+++.++ .++|+++|+++.+++...+....                              
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~------------------------------  103 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRE------------------------------  103 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHH------------------------------
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhc------------------------------
Confidence            67899999999999999999999887 68999999999987665554333                              


Q ss_pred             HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC---CCCCCCeeEEEecchhhh----HHH
Q psy7837         145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG---YPDAAPYDVIYISQAIRD----IPW  217 (299)
Q Consensus       145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~fD~v~~~~~~~~----~~~  217 (299)
                                                            ..++.++.+|+...   .+..++||+|+++...+.    +.+
T Consensus       104 --------------------------------------~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~l~  145 (210)
T 1nt2_A          104 --------------------------------------RNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKA  145 (210)
T ss_dssp             --------------------------------------CSSEEEECSCTTCGGGTTTTCCCEEEEEECCCSTTHHHHHHH
T ss_pred             --------------------------------------CCCeEEEEcCCCCchhhcccccceeEEEEeccChhHHHHHHH
Confidence                                                  13788888888753   122378999999854332    357


Q ss_pred             HHHHhccCCcEEEEEec
Q psy7837         218 HIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       218 ~~~~~L~~gG~lv~~~~  234 (299)
                      ++.++|||||++++...
T Consensus       146 ~~~r~LkpgG~l~i~~~  162 (210)
T 1nt2_A          146 NAEFFLKEKGEVVIMVK  162 (210)
T ss_dssp             HHHHHEEEEEEEEEEEE
T ss_pred             HHHHHhCCCCEEEEEEe
Confidence            89999999999999863

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.51  E-value=1.1e-13  Score=115.40  Aligned_cols=101  Identities=15%  Similarity=0.203  Sum_probs=82.0

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCC----CCeEEEEcCCCCCCCCCCCe
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALA----ENFEFVCADGRRGYPDAAPY  203 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~----~~v~~~~~d~~~~~~~~~~f  203 (299)
                      .++.+|||+|||+|.++..+++.+  .+|+++|+|+.+++.+++++..+    ...    .+++++.+|+.......++|
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~~~~~~v~~~~~d~~~~~~~~~~f  103 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKID----RLPEMQRKRISLFQSSLVYRDKRFSGY  103 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGG----GSCHHHHTTEEEEECCSSSCCGGGTTC
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhh----ccccccCcceEEEeCcccccccccCCC
Confidence            568899999999999999999886  68999999999999999998662    122    28999999987654445789


Q ss_pred             eEEEecchhhhHH--------HHHHHhccCCcEEEEEec
Q psy7837         204 DVIYISQAIRDIP--------WHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       204 D~v~~~~~~~~~~--------~~~~~~L~~gG~lv~~~~  234 (299)
                      |+|++..+++++.        +++.++|||||.++....
T Consensus       104 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  142 (219)
T 3jwg_A          104 DAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPN  142 (219)
T ss_dssp             SEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred             CEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccc
Confidence            9999998876543        468899999996655443

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.51  E-value=2.5e-13  Score=118.04  Aligned_cols=104  Identities=18%  Similarity=0.072  Sum_probs=87.1

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHH-HcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCee
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFA-YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYD  204 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  204 (299)
                      ...+.++.+|||+|||+|.++..++ ..+.+|+++|+|+.+++.+++++...    +...+++++.+|+....   ++||
T Consensus        59 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~----~~~~~~~~~~~d~~~~~---~~fD  131 (287)
T 1kpg_A           59 KLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANS----ENLRSKRVLLAGWEQFD---EPVD  131 (287)
T ss_dssp             TTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTC----CCCSCEEEEESCGGGCC---CCCS
T ss_pred             HcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc----CCCCCeEEEECChhhCC---CCee
Confidence            3456788999999999999999998 55889999999999999999998763    33468999999987543   6799


Q ss_pred             EEEecchhhhH--------HHHHHHhccCCcEEEEEecCC
Q psy7837         205 VIYISQAIRDI--------PWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       205 ~v~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +|++..+++++        .+++.++|||||.+++.....
T Consensus       132 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  171 (287)
T 1kpg_A          132 RIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITG  171 (287)
T ss_dssp             EEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred             EEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence            99999887655        358899999999999987543

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.51  E-value=1.8e-13  Score=118.89  Aligned_cols=98  Identities=21%  Similarity=0.241  Sum_probs=85.0

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS  209 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  209 (299)
                      .++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++..+     .. +++++.+|+..... .++||+|+++
T Consensus       119 ~~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~-----~~-~~~~~~~d~~~~~~-~~~fD~i~~~  191 (286)
T 3m70_A          119 ISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKE-----NL-NISTALYDINAANI-QENYDFIVST  191 (286)
T ss_dssp             SCSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-----TC-CEEEEECCGGGCCC-CSCEEEEEEC
T ss_pred             cCCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHc-----CC-ceEEEEeccccccc-cCCccEEEEc
Confidence            36899999999999999999999999999999999999999998873     33 89999999987554 5789999999


Q ss_pred             chhhh--------HHHHHHHhccCCcEEEEEec
Q psy7837         210 QAIRD--------IPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       210 ~~~~~--------~~~~~~~~L~~gG~lv~~~~  234 (299)
                      .++++        +.+++.++|+|||.+++...
T Consensus       192 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  224 (286)
T 3m70_A          192 VVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA  224 (286)
T ss_dssp             SSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            87753        44688999999999887654

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.51  E-value=1.1e-13  Score=118.67  Aligned_cols=106  Identities=21%  Similarity=0.269  Sum_probs=87.6

Q ss_pred             ccC-CCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCCCCe
Q psy7837         128 HLV-YGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDAAPY  203 (299)
Q Consensus       128 ~~~-~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~f  203 (299)
                      ... ++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++++.+    ....+++++++|+....  ...++|
T Consensus        45 ~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~----~~~~~v~~~~~D~~~~~~~~~~~~f  120 (259)
T 3lpm_A           45 YLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYN----QLEDQIEIIEYDLKKITDLIPKERA  120 (259)
T ss_dssp             CCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHT----TCTTTEEEECSCGGGGGGTSCTTCE
T ss_pred             cCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHC----CCcccEEEEECcHHHhhhhhccCCc
Confidence            445 789999999999999999998865 8999999999999999999874    34457999999998643  234789


Q ss_pred             eEEEecchhh--------------------------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837         204 DVIYISQAIR--------------------------DIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       204 D~v~~~~~~~--------------------------~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      |+|++++++.                          .+.+.+.++|+|||++++..+...
T Consensus       121 D~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  180 (259)
T 3lpm_A          121 DIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPER  180 (259)
T ss_dssp             EEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTT
T ss_pred             cEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHH
Confidence            9999986642                          345688999999999999876554

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.51  E-value=1.5e-13  Score=116.25  Aligned_cols=101  Identities=16%  Similarity=0.167  Sum_probs=87.3

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      +.++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++.        ...+++++.+|+.......++||+|++
T Consensus        51 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~--------~~~~~~~~~~d~~~~~~~~~~fD~v~~  122 (242)
T 3l8d_A           51 VKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERG--------EGPDLSFIKGDLSSLPFENEQFEAIMA  122 (242)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTT--------CBTTEEEEECBTTBCSSCTTCEEEEEE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhc--------ccCCceEEEcchhcCCCCCCCccEEEE
Confidence            357889999999999999999999999999999999999998873        346899999999876555688999999


Q ss_pred             cchhhh------HHHHHHHhccCCcEEEEEecCCC
Q psy7837         209 SQAIRD------IPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       209 ~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      ..++++      +.+++.++|+|||.+++......
T Consensus       123 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~  157 (242)
T 3l8d_A          123 INSLEWTEEPLRALNEIKRVLKSDGYACIAILGPT  157 (242)
T ss_dssp             ESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             cChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCc
Confidence            988764      45689999999999999886544

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.50  E-value=2.1e-13  Score=123.20  Aligned_cols=102  Identities=23%  Similarity=0.301  Sum_probs=88.2

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS  209 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  209 (299)
                      .++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.++++++.+     . .+++++.+|+.......++||+|+++
T Consensus       232 ~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~-----~-~~v~~~~~D~~~~~~~~~~fD~Ii~n  305 (381)
T 3dmg_A          232 VRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEAN-----A-LKAQALHSDVDEALTEEARFDIIVTN  305 (381)
T ss_dssp             TTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHT-----T-CCCEEEECSTTTTSCTTCCEEEEEEC
T ss_pred             CCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHc-----C-CCeEEEEcchhhccccCCCeEEEEEC
Confidence            46889999999999999999999999999999999999999999873     2 24899999998766555789999999


Q ss_pred             chhhh-----------HHHHHHHhccCCcEEEEEecCCC
Q psy7837         210 QAIRD-----------IPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       210 ~~~~~-----------~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      .++++           +.+++.++|+|||.++++.....
T Consensus       306 pp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l  344 (381)
T 3dmg_A          306 PPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFL  344 (381)
T ss_dssp             CCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTS
T ss_pred             CchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCC
Confidence            77653           45688999999999999987653

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.50  E-value=3.6e-13  Score=112.66  Aligned_cols=100  Identities=20%  Similarity=0.305  Sum_probs=85.6

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS  209 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  209 (299)
                      .++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++++.+     . .+++++.+|+.......++||+|+++
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~-~~~~~~~~d~~~~~~~~~~~D~v~~~  110 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSR-----E-SNVEFIVGDARKLSFEDKTFDYVIFI  110 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-----T-CCCEEEECCTTSCCSCTTCEEEEEEE
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc-----C-CCceEEECchhcCCCCCCcEEEEEEc
Confidence            45889999999999999999999889999999999999999998762     2 68999999988754445789999998


Q ss_pred             ch--hhh------HHHHHHHhccCCcEEEEEecC
Q psy7837         210 QA--IRD------IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       210 ~~--~~~------~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      .+  +.+      +.+++.++|+|||.+++..+.
T Consensus       111 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          111 DSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             SCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            88  433      346889999999999998765

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.50  E-value=1e-13  Score=120.37  Aligned_cols=101  Identities=19%  Similarity=0.267  Sum_probs=86.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-CCCCCeeEEEec
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-PDAAPYDVIYIS  209 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~  209 (299)
                      ++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++++..    +...+++++++|+.... ...++||+|++.
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~  143 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAK----GVSDNMQFIHCAAQDVASHLETPVDLILFH  143 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-----CCGGGEEEEESCGGGTGGGCSSCEEEEEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----CCCcceEEEEcCHHHhhhhcCCCceEEEEC
Confidence            3679999999999999999999999999999999999999998773    23368999999998754 345789999999


Q ss_pred             chhhh------HHHHHHHhccCCcEEEEEecC
Q psy7837         210 QAIRD------IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       210 ~~~~~------~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      .++++      +.+++.++|+|||.+++...+
T Consensus       144 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  175 (285)
T 4htf_A          144 AVLEWVADPRSVLQTLWSVLRPGGVLSLMFYN  175 (285)
T ss_dssp             SCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             chhhcccCHHHHHHHHHHHcCCCeEEEEEEeC
Confidence            98864      446899999999999998754

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.50  E-value=1e-13  Score=121.08  Aligned_cols=106  Identities=22%  Similarity=0.285  Sum_probs=82.9

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCc----------------------------
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPA----------------------------  179 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~----------------------------  179 (299)
                      .++.+|||||||+|.++..+++.  +.+|+++|+++.+++.|+++++.....                            
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS  124 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence            46899999999999999999987  678999999999999999987652100                            


Q ss_pred             -------------------------ccCCCCeEEEEcCCCCCC-----CCCCCeeEEEecchhhhH------------HH
Q psy7837         180 -------------------------IALAENFEFVCADGRRGY-----PDAAPYDVIYISQAIRDI------------PW  217 (299)
Q Consensus       180 -------------------------~~~~~~v~~~~~d~~~~~-----~~~~~fD~v~~~~~~~~~------------~~  217 (299)
                                               .....+++|+++|+....     ...++||+|++..++.++            .+
T Consensus       125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~  204 (292)
T 3g07_A          125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR  204 (292)
T ss_dssp             -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence                                     001158999999987543     245789999999987554            35


Q ss_pred             HHHHhccCCcEEEEEecC
Q psy7837         218 HIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       218 ~~~~~L~~gG~lv~~~~~  235 (299)
                      ++.++|+|||+|++...+
T Consensus       205 ~~~~~LkpGG~lil~~~~  222 (292)
T 3g07_A          205 RIYRHLRPGGILVLEPQP  222 (292)
T ss_dssp             HHHHHEEEEEEEEEECCC
T ss_pred             HHHHHhCCCcEEEEecCC
Confidence            889999999999997654

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.50  E-value=3.3e-14  Score=123.91  Aligned_cols=105  Identities=16%  Similarity=0.194  Sum_probs=83.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---CCCCCeeEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---PDAAPYDVI  206 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~v  206 (299)
                      .++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.++++....... ....++.+..+|+....   ...++||+|
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~fD~V  134 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKE-PAFDKWVIEEANWLTLDKDVPAGDGFDAV  134 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTS-HHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccc-cccceeeEeecChhhCccccccCCCeEEE
Confidence            46789999999999999999999999999999999999999887431100 12347888999987643   445789999


Q ss_pred             Eec-chhhh-------------HHHHHHHhccCCcEEEEEecC
Q psy7837         207 YIS-QAIRD-------------IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       207 ~~~-~~~~~-------------~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ++. .++++             +.+++.++|||||++++..++
T Consensus       135 ~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  177 (293)
T 3thr_A          135 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  177 (293)
T ss_dssp             EECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             EEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            997 55533             446899999999999998754

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.50  E-value=1.9e-13  Score=112.46  Aligned_cols=102  Identities=17%  Similarity=0.131  Sum_probs=84.5

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      +.++ +|||+|||+|.++..+++.+.+|+++|+++.+++.+++++...     .. ++.++.+|+.......++||+|++
T Consensus        28 ~~~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~-~~~~~~~d~~~~~~~~~~fD~v~~  100 (202)
T 2kw5_A           28 IPQG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEK-----GV-KITTVQSNLADFDIVADAWEGIVS  100 (202)
T ss_dssp             SCSS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHH-----TC-CEEEECCBTTTBSCCTTTCSEEEE
T ss_pred             CCCC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhc-----CC-ceEEEEcChhhcCCCcCCccEEEE
Confidence            3456 9999999999999999999999999999999999999998762     22 899999998875545578999998


Q ss_pred             cchh------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         209 SQAI------RDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       209 ~~~~------~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      ....      ..+.+++.++|+|||.+++......
T Consensus       101 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  135 (202)
T 2kw5_A          101 IFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPE  135 (202)
T ss_dssp             ECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTT
T ss_pred             EhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence            6432      2345688999999999999986554

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.50  E-value=2.2e-13  Score=112.49  Aligned_cols=102  Identities=19%  Similarity=0.155  Sum_probs=82.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC-CCCCCCeeEEEe
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG-YPDAAPYDVIYI  208 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~v~~  208 (299)
                      ++.+|||+|||+|.+++.+++.+. +|+++|+++.+++.++++++.+     ...+++++++|+... ....++||+|++
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~-----~~~~v~~~~~D~~~~~~~~~~~fD~V~~  128 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATL-----KAGNARVVNSNAMSFLAQKGTPHNIVFV  128 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHT-----TCCSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHc-----CCCcEEEEECCHHHHHhhcCCCCCEEEE
Confidence            578999999999999999887774 8999999999999999999873     447899999998752 223468999999


Q ss_pred             cchhh-----hHHHHHHH--hccCCcEEEEEecCCC
Q psy7837         209 SQAIR-----DIPWHIVD--QLKLGGRMLFIKGHED  237 (299)
Q Consensus       209 ~~~~~-----~~~~~~~~--~L~~gG~lv~~~~~~~  237 (299)
                      +.+++     .+.+.+.+  +|+|||++++.+....
T Consensus       129 ~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~  164 (202)
T 2fpo_A          129 DPPFRRGLLEETINLLEDNGWLADEALIYVESEVEN  164 (202)
T ss_dssp             CCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEGGG
T ss_pred             CCCCCCCcHHHHHHHHHhcCccCCCcEEEEEECCCc
Confidence            98743     34455644  5999999999886543

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.50  E-value=1.3e-13  Score=119.40  Aligned_cols=122  Identities=25%  Similarity=0.396  Sum_probs=98.9

Q ss_pred             ccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhh
Q psy7837          47 FMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFY  126 (299)
Q Consensus        47 ~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~  126 (299)
                      ....|.....+++.+.  +.++.+|||+|||+|.++..+++.+++.++++++|+++.+++.+++++...           
T Consensus        94 ~~~~~~~~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----------  160 (277)
T 1o54_A           94 QIVYPKDSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW-----------  160 (277)
T ss_dssp             CCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT-----------
T ss_pred             CccCHHHHHHHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc-----------
Confidence            3455666666676665  889999999999999999999998877788999999999999888887661           


Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI  206 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  206 (299)
                                                                            ....+++++.+|+.... ..++||+|
T Consensus       161 ------------------------------------------------------~~~~~v~~~~~d~~~~~-~~~~~D~V  185 (277)
T 1o54_A          161 ------------------------------------------------------GLIERVTIKVRDISEGF-DEKDVDAL  185 (277)
T ss_dssp             ------------------------------------------------------TCGGGEEEECCCGGGCC-SCCSEEEE
T ss_pred             ------------------------------------------------------CCCCCEEEEECCHHHcc-cCCccCEE
Confidence                                                                  22257999999988763 33679999


Q ss_pred             Eecchhh-hHHHHHHHhccCCcEEEEEecCC
Q psy7837         207 YISQAIR-DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       207 ~~~~~~~-~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +++..-. .+.+++.++|+|||.+++..+..
T Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (277)
T 1o54_A          186 FLDVPDPWNYIDKCWEALKGGGRFATVCPTT  216 (277)
T ss_dssp             EECCSCGGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred             EECCcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            9987654 67789999999999999998754

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.49  E-value=1.8e-13  Score=115.73  Aligned_cols=101  Identities=22%  Similarity=0.290  Sum_probs=85.9

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      ....++.+|||+|||+|.++..+++.+. +++++|+++.+++.++++...        .++.++.+|+.......++||+
T Consensus        39 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~d~~~~~~~~~~fD~  110 (243)
T 3bkw_A           39 LPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD--------TGITYERADLDKLHLPQDSFDL  110 (243)
T ss_dssp             SCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS--------SSEEEEECCGGGCCCCTTCEEE
T ss_pred             ccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc--------CCceEEEcChhhccCCCCCceE
Confidence            3445789999999999999999999988 899999999999999987532        4799999999875555578999


Q ss_pred             EEecchhhh------HHHHHHHhccCCcEEEEEecC
Q psy7837         206 IYISQAIRD------IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       206 v~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      |++..++++      +.+++.++|+|||.+++..++
T Consensus       111 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  146 (243)
T 3bkw_A          111 AYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEH  146 (243)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCC
Confidence            999988754      346899999999999998754

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.49  E-value=3.2e-13  Score=113.45  Aligned_cols=108  Identities=20%  Similarity=0.219  Sum_probs=88.0

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      +.++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++...+-......++.++.+|+.......++||+|++
T Consensus        28 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  107 (235)
T 3sm3_A           28 LQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM  107 (235)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence            45789999999999999999999999999999999999999998876311101124789999999876555688999999


Q ss_pred             cchhhh---------HHHHHHHhccCCcEEEEEecCC
Q psy7837         209 SQAIRD---------IPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       209 ~~~~~~---------~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ..++++         +.+++.++|+|||.+++.....
T Consensus       108 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (235)
T 3sm3_A          108 QAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQ  144 (235)
T ss_dssp             ESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             cchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence            887653         4468899999999999986543

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.49  E-value=1.6e-13  Score=114.32  Aligned_cols=101  Identities=15%  Similarity=0.222  Sum_probs=84.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCCCCeeEE
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDAAPYDVI  206 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v  206 (299)
                      ++.+|||+|||+|.++..+++.  +.+++|+|+|+.+++.++++++.     ....++.++.+|+....  ...++||.|
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~-----~~~~nv~~~~~d~~~l~~~~~~~~~d~v  112 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKD-----SEAQNVKLLNIDADTLTDVFEPGEVKRV  112 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH-----SCCSSEEEECCCGGGHHHHCCTTSCCEE
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHH-----cCCCCEEEEeCCHHHHHhhcCcCCcCEE
Confidence            5789999999999999999987  67899999999999999999987     45578999999987632  334679999


Q ss_pred             Eecchh--------------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         207 YISQAI--------------RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       207 ~~~~~~--------------~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +++.+.              ..+.+++.++|+|||.+++.+...
T Consensus       113 ~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~  156 (213)
T 2fca_A          113 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR  156 (213)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH
T ss_pred             EEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            886532              346788999999999999987553

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.49  E-value=2.1e-13  Score=116.63  Aligned_cols=103  Identities=16%  Similarity=0.137  Sum_probs=78.7

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC--CCCCCCCe
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR--GYPDAAPY  203 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~f  203 (299)
                      ...+.++.+|||+|||+|.++..+++.+.+|+++|+|+.|++.+++++..     .   .+.....+...  .....++|
T Consensus        40 ~l~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~-----~---~v~~~~~~~~~~~~~~~~~~f  111 (261)
T 3iv6_A           40 LENIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALAD-----R---CVTIDLLDITAEIPKELAGHF  111 (261)
T ss_dssp             TTTCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSS-----S---CCEEEECCTTSCCCGGGTTCC
T ss_pred             hcCCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHh-----c---cceeeeeecccccccccCCCc
Confidence            44567889999999999999999999999999999999999999998755     1   22222222222  11113689


Q ss_pred             eEEEecchhhhH--------HHHHHHhccCCcEEEEEecCCC
Q psy7837         204 DVIYISQAIRDI--------PWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       204 D~v~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      |+|+++.+++++        ..++.++| |||++++++....
T Consensus       112 D~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g~  152 (261)
T 3iv6_A          112 DFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLGF  152 (261)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBSC
T ss_pred             cEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccCc
Confidence            999999887643        35778899 9999999987643

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.49  E-value=1.2e-13  Score=114.48  Aligned_cols=98  Identities=20%  Similarity=0.254  Sum_probs=83.6

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      .+.++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++           ++.++.+|+.... ..++||+|+
T Consensus        40 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~d~~~~~-~~~~fD~v~  107 (211)
T 3e23_A           40 ELPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL-----------GRPVRTMLFHQLD-AIDAYDAVW  107 (211)
T ss_dssp             TSCTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----------TSCCEECCGGGCC-CCSCEEEEE
T ss_pred             hcCCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc-----------CCceEEeeeccCC-CCCcEEEEE
Confidence            4567899999999999999999999999999999999999999874           4567788887655 558899999


Q ss_pred             ecchhhhH--------HHHHHHhccCCcEEEEEecCCC
Q psy7837         208 ISQAIRDI--------PWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       208 ~~~~~~~~--------~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      +..+++++        .+++.++|+|||.+++......
T Consensus       108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  145 (211)
T 3e23_A          108 AHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGE  145 (211)
T ss_dssp             ECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCS
T ss_pred             ecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCC
Confidence            99987654        3588999999999999976654

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.48  E-value=3e-13  Score=112.05  Aligned_cols=101  Identities=17%  Similarity=0.207  Sum_probs=85.4

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      +.++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++..       ..++.++.+|+.......++||+|+
T Consensus        40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~-------~~~i~~~~~d~~~~~~~~~~fD~v~  112 (215)
T 2pxx_A           40 LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH-------VPQLRWETMDVRKLDFPSASFDVVL  112 (215)
T ss_dssp             CCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT-------CTTCEEEECCTTSCCSCSSCEEEEE
T ss_pred             cCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc-------CCCcEEEEcchhcCCCCCCcccEEE
Confidence            36788999999999999999999986 799999999999999998643       3589999999987554557899999


Q ss_pred             ecchhhh---------------------HHHHHHHhccCCcEEEEEecCC
Q psy7837         208 ISQAIRD---------------------IPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       208 ~~~~~~~---------------------~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +..+++.                     +.+++.++|+|||.+++.....
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          113 EKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             EESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             ECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence            9877633                     3457899999999999988765

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.48  E-value=2.4e-13  Score=110.39  Aligned_cols=105  Identities=22%  Similarity=0.273  Sum_probs=87.5

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      ...++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++++.+    ....++.+..+|........++||+|+
T Consensus        30 ~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~----~~~~~~~~~~~d~~~~~~~~~~~D~v~  105 (192)
T 1l3i_A           30 EPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRH----GLGDNVTLMEGDAPEALCKIPDIDIAV  105 (192)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHT----TCCTTEEEEESCHHHHHTTSCCEEEEE
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHc----CCCcceEEEecCHHHhcccCCCCCEEE
Confidence            5677899999999999999999998889999999999999999998873    223689999999876333325799999


Q ss_pred             ecchhh---hHHHHHHHhccCCcEEEEEecCC
Q psy7837         208 ISQAIR---DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       208 ~~~~~~---~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ++.+++   .+.+.+.++|+|||.+++.....
T Consensus       106 ~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~~~  137 (192)
T 1l3i_A          106 VGGSGGELQEILRIIKDKLKPGGRIIVTAILL  137 (192)
T ss_dssp             ESCCTTCHHHHHHHHHHTEEEEEEEEEEECBH
T ss_pred             ECCchHHHHHHHHHHHHhcCCCcEEEEEecCc
Confidence            998754   45578899999999999987654

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.48  E-value=1.5e-13  Score=119.20  Aligned_cols=102  Identities=22%  Similarity=0.151  Sum_probs=87.6

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      ..++.+|||+|||+|.++..+++.+.. |+++|+|+.+++.+++|++.+    +...+++++++|+..... .++||+|+
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n----~~~~~v~~~~~D~~~~~~-~~~fD~Vi  197 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLN----KVEDRMSAYNMDNRDFPG-ENIADRIL  197 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHT----TCTTTEEEECSCTTTCCC-CSCEEEEE
T ss_pred             CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHc----CCCceEEEEECCHHHhcc-cCCccEEE
Confidence            456899999999999999999999874 999999999999999999884    333459999999987655 57899999


Q ss_pred             ecchhh--hHHHHHHHhccCCcEEEEEecC
Q psy7837         208 ISQAIR--DIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       208 ~~~~~~--~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ++.+..  .+.+++.++|+|||.+++....
T Consensus       198 ~~~p~~~~~~l~~~~~~LkpgG~l~~~~~~  227 (278)
T 2frn_A          198 MGYVVRTHEFIPKALSIAKDGAIIHYHNTV  227 (278)
T ss_dssp             ECCCSSGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             ECCchhHHHHHHHHHHHCCCCeEEEEEEee
Confidence            987753  5678899999999999997654

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.48  E-value=1.1e-13  Score=116.71  Aligned_cols=101  Identities=20%  Similarity=0.153  Sum_probs=84.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQ  210 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~  210 (299)
                      ++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++...    ....+++++++|+....+ ..+||+|++..
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~  140 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSS----PKAEYFSFVKEDVFTWRP-TELFDLIFDYV  140 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTS----GGGGGEEEECCCTTTCCC-SSCEEEEEEES
T ss_pred             CCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhcc----CCCcceEEEECchhcCCC-CCCeeEEEECh
Confidence            3469999999999999999999999999999999999999998652    244689999999987554 36899999988


Q ss_pred             hhhhH--------HHHHHHhccCCcEEEEEecCC
Q psy7837         211 AIRDI--------PWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       211 ~~~~~--------~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +++++        .+++.++|+|||.+++.....
T Consensus       141 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  174 (235)
T 3lcc_A          141 FFCAIEPEMRPAWAKSMYELLKPDGELITLMYPI  174 (235)
T ss_dssp             STTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             hhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecc
Confidence            77543        468899999999999876543

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.48  E-value=5.5e-13  Score=117.67  Aligned_cols=107  Identities=18%  Similarity=0.065  Sum_probs=88.9

Q ss_pred             hhhcccCCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCC
Q psy7837         124 NFYGHLVYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAP  202 (299)
Q Consensus       124 ~~~~~~~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  202 (299)
                      .....+.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...    +...+++++.+|+....   ++
T Consensus        83 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~~v~~~~~d~~~~~---~~  155 (318)
T 2fk8_A           83 LDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASI----DTNRSRQVLLQGWEDFA---EP  155 (318)
T ss_dssp             HTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTS----CCSSCEEEEESCGGGCC---CC
T ss_pred             HHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----CCCCceEEEECChHHCC---CC
Confidence            33445678899999999999999999987 899999999999999999998763    23457999999987642   67


Q ss_pred             eeEEEecchhhhH--------HHHHHHhccCCcEEEEEecCCC
Q psy7837         203 YDVIYISQAIRDI--------PWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       203 fD~v~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      ||+|++..+++++        .+++.++|+|||++++......
T Consensus       156 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  198 (318)
T 2fk8_A          156 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSY  198 (318)
T ss_dssp             CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred             cCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence            9999999877654        3588999999999999876543

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.48  E-value=1.5e-13  Score=116.49  Aligned_cols=102  Identities=15%  Similarity=0.131  Sum_probs=83.7

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHH--cCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC---CCCee
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAY--MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD---AAPYD  204 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD  204 (299)
                      .++.+|||+|||+|..+..++.  .+.+|+++|+++.+++.++++++.     ....+++++++|+......   .++||
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~v~~~~~d~~~~~~~~~~~~~fD  143 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEA-----LQLENTTFCHDRAETFGQRKDVRESYD  143 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH-----HTCSSEEEEESCHHHHTTCTTTTTCEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-----cCCCCEEEEeccHHHhcccccccCCcc
Confidence            5788999999999999999985  477899999999999999999987     3455799999998753321   46899


Q ss_pred             EEEecchh--hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         205 VIYISQAI--RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       205 ~v~~~~~~--~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +|++....  ..+.+.+.++|+|||.+++.....
T Consensus       144 ~V~~~~~~~~~~~l~~~~~~LkpgG~l~~~~g~~  177 (240)
T 1xdz_A          144 IVTARAVARLSVLSELCLPLVKKNGLFVALKAAS  177 (240)
T ss_dssp             EEEEECCSCHHHHHHHHGGGEEEEEEEEEEECC-
T ss_pred             EEEEeccCCHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            99987743  346678899999999999976543

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.48  E-value=1.2e-13  Score=116.50  Aligned_cols=100  Identities=21%  Similarity=0.267  Sum_probs=83.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHH--cCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC--CCCCeeE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAY--MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP--DAAPYDV  205 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD~  205 (299)
                      .++.+|||+|||+|..+..+++  .+.+|+++|+++.+++.++++++..    +...+++++.+|+....+  ..++||+
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~----~~~~~v~~~~~d~~~~~~~~~~~~fD~  145 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATY----HFENQVRIIEGNALEQFENVNDKVYDM  145 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHT----TCTTTEEEEESCGGGCHHHHTTSCEEE
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----CCCCcEEEEECCHHHHHHhhccCCccE
Confidence            4688999999999999999998  4688999999999999999999873    233589999999986533  1478999


Q ss_pred             EEecchhhh---HHHHHHHhccCCcEEEEEe
Q psy7837         206 IYISQAIRD---IPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       206 v~~~~~~~~---~~~~~~~~L~~gG~lv~~~  233 (299)
                      |+++.....   +.+.+.++|+|||++++..
T Consensus       146 V~~~~~~~~~~~~l~~~~~~LkpgG~lv~d~  176 (232)
T 3ntv_A          146 IFIDAAKAQSKKFFEIYTPLLKHQGLVITDN  176 (232)
T ss_dssp             EEEETTSSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             EEEcCcHHHHHHHHHHHHHhcCCCeEEEEee
Confidence            999886644   4578899999999998843

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.48  E-value=1.6e-13  Score=117.14  Aligned_cols=102  Identities=13%  Similarity=0.158  Sum_probs=85.6

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC---CCCee
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD---AAPYD  204 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD  204 (299)
                      .++.+|||+|||+|..++.++..  +.+|+++|+++.+++.++++++.     .+..+++++++|+......   .++||
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~l~~v~~~~~d~~~~~~~~~~~~~fD  153 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEV-----LGLKGARALWGRAEVLAREAGHREAYA  153 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH-----HTCSSEEEEECCHHHHTTSTTTTTCEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-----hCCCceEEEECcHHHhhcccccCCCce
Confidence            56889999999999999999876  67899999999999999999988     4556799999998764332   36899


Q ss_pred             EEEecchh--hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         205 VIYISQAI--RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       205 ~v~~~~~~--~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +|++....  ..+.+.+.++|+|||++++..+..
T Consensus       154 ~I~s~a~~~~~~ll~~~~~~LkpgG~l~~~~g~~  187 (249)
T 3g89_A          154 RAVARAVAPLCVLSELLLPFLEVGGAAVAMKGPR  187 (249)
T ss_dssp             EEEEESSCCHHHHHHHHGGGEEEEEEEEEEECSC
T ss_pred             EEEECCcCCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            99997653  456788999999999999877543

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.48  E-value=3.1e-13  Score=117.47  Aligned_cols=103  Identities=21%  Similarity=0.339  Sum_probs=87.9

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCC
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAP  202 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  202 (299)
                      +..+.++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.+++++..      ...+++++++|+..... .++
T Consensus        17 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~------~~~~v~~~~~d~~~~~~-~~~   89 (284)
T 3gu3_A           17 VWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL------LPYDSEFLEGDATEIEL-NDK   89 (284)
T ss_dssp             TSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHS------SSSEEEEEESCTTTCCC-SSC
T ss_pred             HhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHh------cCCceEEEEcchhhcCc-CCC
Confidence            345678899999999999999999987   57999999999999999999876      22389999999987544 468


Q ss_pred             eeEEEecchhhh------HHHHHHHhccCCcEEEEEecC
Q psy7837         203 YDVIYISQAIRD------IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       203 fD~v~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ||+|++..++++      +.+++.++|+|||.+++..+.
T Consensus        90 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           90 YDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             EEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             eeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence            999999988754      346899999999999998776

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.48  E-value=9.4e-14  Score=116.16  Aligned_cols=102  Identities=16%  Similarity=0.139  Sum_probs=85.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC---CCCCCCeeE
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG---YPDAAPYDV  205 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~fD~  205 (299)
                      ++.+|||||||+|.++..+++.  +..|+|+|+++.+++.++++++.     .+..|+.++.+|+...   ..+.++||.
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~-----~~l~nv~~~~~Da~~~l~~~~~~~~~d~  108 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHE-----EGLSNLRVMCHDAVEVLHKMIPDNSLRM  108 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH-----TTCSSEEEECSCHHHHHHHHSCTTCEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHH-----hCCCcEEEEECCHHHHHHHHcCCCChhe
Confidence            5789999999999999999987  46799999999999999999987     4667899999998753   134578999


Q ss_pred             EEecchhh--------------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837         206 IYISQAIR--------------DIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       206 v~~~~~~~--------------~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      |+++.+..              .+.+++.++|||||.+++.+....
T Consensus       109 v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~  154 (218)
T 3dxy_A          109 VQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEP  154 (218)
T ss_dssp             EEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHH
T ss_pred             EEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHH
Confidence            99974321              377899999999999999987553

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.48  E-value=2.7e-13  Score=114.72  Aligned_cols=100  Identities=18%  Similarity=0.214  Sum_probs=85.3

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS  209 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  209 (299)
                      .++.+|||+|||+|.++..+++.+.+++++|+++.+++.+++++...     .. ++.++++|+...... ++||+|++.
T Consensus        36 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~-----~~-~~~~~~~d~~~~~~~-~~fD~v~~~  108 (246)
T 1y8c_A           36 LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQ-----GL-KPRLACQDISNLNIN-RKFDLITCC  108 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHT-----TC-CCEEECCCGGGCCCS-CCEEEEEEC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhc-----CC-CeEEEecccccCCcc-CCceEEEEc
Confidence            36789999999999999999999999999999999999999998762     22 799999998875444 789999999


Q ss_pred             c-hhhhH---------HHHHHHhccCCcEEEEEecCC
Q psy7837         210 Q-AIRDI---------PWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       210 ~-~~~~~---------~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      . +++++         .+++.++|+|||.+++.+++.
T Consensus       109 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  145 (246)
T 1y8c_A          109 LDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSY  145 (246)
T ss_dssp             TTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             CccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCH
Confidence            8 77655         257889999999999977653

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.48  E-value=1.3e-13  Score=116.63  Aligned_cols=99  Identities=17%  Similarity=0.122  Sum_probs=80.3

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC--CCCCCCeeEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG--YPDAAPYDVI  206 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~v  206 (299)
                      .++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++.+..      ..++.++++|+...  ....++||+|
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~------~~~v~~~~~d~~~~~~~~~~~~fD~V  132 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQ------THKVIPLKGLWEDVAPTLPDGHFDGI  132 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGC------SSEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhc------CCCeEEEecCHHHhhcccCCCceEEE
Confidence            4578999999999999999988765 7999999999999999988762      26899999998764  3445789999


Q ss_pred             Ee-cch-----hh-----hHHHHHHHhccCCcEEEEEec
Q psy7837         207 YI-SQA-----IR-----DIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       207 ~~-~~~-----~~-----~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      ++ ...     .+     .+.+++.++|||||++++...
T Consensus       133 ~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  171 (236)
T 1zx0_A          133 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL  171 (236)
T ss_dssp             EECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred             EECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence            99 222     11     235789999999999998653

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.47  E-value=1e-13  Score=117.37  Aligned_cols=127  Identities=18%  Similarity=0.146  Sum_probs=89.7

Q ss_pred             cccccccccccccccCC-cchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHH---hCCCceEEEEeCCHHHHHHHH
Q psy7837          34 TLLDIPHNIGHNAFMES-PSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAM---VGISGKVYTIEHIPELLEAAR  109 (299)
Q Consensus        34 ~y~~~~~~~~~~~~~~~-p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~---~~~~g~v~~~d~~~~~~~~a~  109 (299)
                      .|.+.......+..+.. |.....+.+.+.  ..++.+|||+|||+|+.+..+++.   +++.++|+++|+++.+++.++
T Consensus        49 g~~~~~~~~~~~~~~~~~p~~~~~l~~~l~--~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~  126 (236)
T 2bm8_A           49 GYSDFSPYQWRGLRMLKDPDTQAVYHDMLW--ELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA  126 (236)
T ss_dssp             SSCCSSCCEETTEECCSCHHHHHHHHHHHH--HHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG
T ss_pred             CCCcccccccccccccCCHHHHHHHHHHHH--hcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh
Confidence            34444333334555555 666666656555  346789999999999999999987   466678888888887766554


Q ss_pred             HHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEE
Q psy7837         110 KRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV  189 (299)
Q Consensus       110 ~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~  189 (299)
                          .                                                                   ...+++++
T Consensus       127 ----~-------------------------------------------------------------------~~~~v~~~  135 (236)
T 2bm8_A          127 ----S-------------------------------------------------------------------DMENITLH  135 (236)
T ss_dssp             ----G-------------------------------------------------------------------GCTTEEEE
T ss_pred             ----c-------------------------------------------------------------------cCCceEEE
Confidence                1                                                                   12589999


Q ss_pred             EcCCCCC----CCCCCCeeEEEecchh---hhHHHHHHH-hccCCcEEEEEe
Q psy7837         190 CADGRRG----YPDAAPYDVIYISQAI---RDIPWHIVD-QLKLGGRMLFIK  233 (299)
Q Consensus       190 ~~d~~~~----~~~~~~fD~v~~~~~~---~~~~~~~~~-~L~~gG~lv~~~  233 (299)
                      ++|+...    .....+||+|+++...   ..+..++.+ +|||||+|++..
T Consensus       136 ~gD~~~~~~l~~~~~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~d  187 (236)
T 2bm8_A          136 QGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIED  187 (236)
T ss_dssp             ECCSSCSGGGGGGSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred             ECcchhHHHHHhhccCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEEEEEe
Confidence            9998864    1233479999987763   334567776 999999999964

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.47  E-value=4.9e-13  Score=116.51  Aligned_cols=104  Identities=19%  Similarity=0.197  Sum_probs=86.9

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCeeEE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYDVI  206 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v  206 (299)
                      +.++.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++...    ....++.++++|+..... ..++||+|
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~~v~~~~~d~~~~~~~~~~~fD~v  137 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNM----KRRFKVFFRAQDSYGRHMDLGKEFDVI  137 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTS----CCSSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc----CCCccEEEEECCccccccCCCCCcCEE
Confidence            46789999999999999999988876 8999999999999999998763    233579999999986543 45789999


Q ss_pred             Eecchhhh----------HHHHHHHhccCCcEEEEEecCC
Q psy7837         207 YISQAIRD----------IPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       207 ~~~~~~~~----------~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ++..++++          +.+++.++|+|||.+++..+..
T Consensus       138 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  177 (298)
T 1ri5_A          138 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR  177 (298)
T ss_dssp             EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             EECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            99887743          3357899999999999998764

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.47  E-value=5.4e-13  Score=116.74  Aligned_cols=100  Identities=13%  Similarity=0.060  Sum_probs=84.2

Q ss_pred             CCCCeEEEEcCCCcHHHHHHH---HcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCC------
Q psy7837         130 VYGSKVLDIGSGSGYLSALFA---YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDA------  200 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la---~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~------  200 (299)
                      .++.+|||+|||+|.++..++   ..+.+|+++|+|+.+++.++++++...   ....+++++++|+.......      
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~~v~~~~~d~~~~~~~~~~~~~~  111 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSP---DTYKNVSFKISSSDDFKFLGADSVDK  111 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC----CCTTEEEEECCTTCCGGGCTTTTTS
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcc---CCCCceEEEEcCHHhCCccccccccC
Confidence            478999999999999999999   457889999999999999999987620   13579999999998754444      


Q ss_pred             CCeeEEEecchhhh-----HHHHHHHhccCCcEEEEE
Q psy7837         201 APYDVIYISQAIRD-----IPWHIVDQLKLGGRMLFI  232 (299)
Q Consensus       201 ~~fD~v~~~~~~~~-----~~~~~~~~L~~gG~lv~~  232 (299)
                      ++||+|++..++++     +.+++.++|+|||.+++.
T Consensus       112 ~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i~  148 (299)
T 3g5t_A          112 QKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAIW  148 (299)
T ss_dssp             SCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEEE
Confidence            78999999988764     456899999999999983

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.47  E-value=3.8e-13  Score=120.64  Aligned_cols=113  Identities=20%  Similarity=0.092  Sum_probs=93.0

Q ss_pred             HHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcC---CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC
Q psy7837         119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMG---AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR  195 (299)
Q Consensus       119 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  195 (299)
                      +...+..+....++.+|||+|||+|.++..++..+   .+++++|+++.+++.|++|++.+     +..++++.++|+..
T Consensus       191 la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~-----g~~~i~~~~~D~~~  265 (354)
T 3tma_A          191 LAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALAS-----GLSWIRFLRADARH  265 (354)
T ss_dssp             HHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHT-----TCTTCEEEECCGGG
T ss_pred             HHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHc-----CCCceEEEeCChhh
Confidence            33445555667788999999999999999999875   78999999999999999999883     44489999999987


Q ss_pred             CCCCCCCeeEEEecchh--------------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         196 GYPDAAPYDVIYISQAI--------------RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       196 ~~~~~~~fD~v~~~~~~--------------~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      .......||+|++++++              ..+.+++.++|+|||.+++.++..
T Consensus       266 ~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~  320 (354)
T 3tma_A          266 LPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP  320 (354)
T ss_dssp             GGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH
T ss_pred             CccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            55444669999998774              234468899999999999998765

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.47  E-value=1.4e-13  Score=113.41  Aligned_cols=97  Identities=15%  Similarity=0.179  Sum_probs=83.7

Q ss_pred             CCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecch
Q psy7837         132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQA  211 (299)
Q Consensus       132 ~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~  211 (299)
                      +.+|||+|||+|.++..+++.+.+++++|+++.+++.++++.          .++.++++|+.......++||+|++..+
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~----------~~~~~~~~d~~~~~~~~~~fD~v~~~~~  111 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTH----------PSVTFHHGTITDLSDSPKRWAGLLAWYS  111 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHC----------TTSEEECCCGGGGGGSCCCEEEEEEESS
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC----------CCCeEEeCcccccccCCCCeEEEEehhh
Confidence            889999999999999999999999999999999999998762          3789999998875545578999999887


Q ss_pred             hhhH--------HHHHHHhccCCcEEEEEecCCCC
Q psy7837         212 IRDI--------PWHIVDQLKLGGRMLFIKGHEDD  238 (299)
Q Consensus       212 ~~~~--------~~~~~~~L~~gG~lv~~~~~~~~  238 (299)
                      ++++        .+++.++|+|||.+++.......
T Consensus       112 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~  146 (203)
T 3h2b_A          112 LIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPS  146 (203)
T ss_dssp             STTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSS
T ss_pred             HhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCc
Confidence            6544        46899999999999999876543

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.47  E-value=1.5e-13  Score=115.08  Aligned_cols=118  Identities=11%  Similarity=0.121  Sum_probs=91.2

Q ss_pred             CcchHHHHHHHHhccC--CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhc
Q psy7837          50 SPSDHCLVLELLSGHL--KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYG  127 (299)
Q Consensus        50 ~p~~~~~~~~~l~~~~--~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~  127 (299)
                      .|.. ..++..+....  +++.+|||+|||+|+.+..+++.+++.++++++|+++.+++.+++++...            
T Consensus        38 ~~~~-~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------------  104 (221)
T 3dr5_A           38 DEMT-GQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREA------------  104 (221)
T ss_dssp             CHHH-HHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHT------------
T ss_pred             CHHH-HHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc------------
Confidence            3443 45555554322  34459999999999999999999877789999999999999999888772            


Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCC-CCeEEEEcCCCCCCC--CCCCee
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALA-ENFEFVCADGRRGYP--DAAPYD  204 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~--~~~~fD  204 (299)
                                                                           +.. .+++++.+|+.+...  ..++||
T Consensus       105 -----------------------------------------------------g~~~~~i~~~~gda~~~l~~~~~~~fD  131 (221)
T 3dr5_A          105 -----------------------------------------------------GYSPSRVRFLLSRPLDVMSRLANDSYQ  131 (221)
T ss_dssp             -----------------------------------------------------TCCGGGEEEECSCHHHHGGGSCTTCEE
T ss_pred             -----------------------------------------------------CCCcCcEEEEEcCHHHHHHHhcCCCcC
Confidence                                                                 233 589999999875322  247899


Q ss_pred             EEEecchhhh---HHHHHHHhccCCcEEEEEe
Q psy7837         205 VIYISQAIRD---IPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       205 ~v~~~~~~~~---~~~~~~~~L~~gG~lv~~~  233 (299)
                      +|+++.....   ..+++.++|+|||.+++..
T Consensus       132 ~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~dn  163 (221)
T 3dr5_A          132 LVFGQVSPMDLKALVDAAWPLLRRGGALVLAD  163 (221)
T ss_dssp             EEEECCCTTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred             eEEEcCcHHHHHHHHHHHHHHcCCCcEEEEeC
Confidence            9999887654   4578899999999999854

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.47  E-value=5.3e-13  Score=113.78  Aligned_cols=103  Identities=14%  Similarity=0.219  Sum_probs=84.8

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC---CCCCC
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG---YPDAA  201 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~  201 (299)
                      ...++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.++++++..    +...+++++.+|+...   ....+
T Consensus        60 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~----g~~~~v~~~~~d~~~~l~~~~~~~  135 (248)
T 3tfw_A           60 RLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLA----GVDQRVTLREGPALQSLESLGECP  135 (248)
T ss_dssp             HHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHT----TCTTTEEEEESCHHHHHHTCCSCC
T ss_pred             hhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc----CCCCcEEEEEcCHHHHHHhcCCCC
Confidence            3456899999999999999999987   679999999999999999999873    3345899999998642   22235


Q ss_pred             CeeEEEecchhhh---HHHHHHHhccCCcEEEEEec
Q psy7837         202 PYDVIYISQAIRD---IPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       202 ~fD~v~~~~~~~~---~~~~~~~~L~~gG~lv~~~~  234 (299)
                      +||+|+++.....   ..+++.++|+|||++++...
T Consensus       136 ~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~  171 (248)
T 3tfw_A          136 AFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNV  171 (248)
T ss_dssp             CCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             CeEEEEECCchHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence            8999999887654   45688999999999998754

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.47  E-value=2.3e-13  Score=115.24  Aligned_cols=103  Identities=17%  Similarity=0.220  Sum_probs=85.5

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcC-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMG-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      ..++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.+++++..     ....++.++.+|+.......++||+|+
T Consensus        77 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~fD~v~  151 (241)
T 2ex4_A           77 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGE-----EGKRVRNYFCCGLQDFTPEPDSYDVIW  151 (241)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGG-----GGGGEEEEEECCGGGCCCCSSCEEEEE
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhh-----cCCceEEEEEcChhhcCCCCCCEEEEE
Confidence            3468899999999999999988874 5899999999999999999866     224578999999877655556899999


Q ss_pred             ecchhhh--------HHHHHHHhccCCcEEEEEecCC
Q psy7837         208 ISQAIRD--------IPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       208 ~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +..++++        +.+++.++|+|||++++..+..
T Consensus       152 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  188 (241)
T 2ex4_A          152 IQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA  188 (241)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             EcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccC
Confidence            9987654        3467899999999999976543

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.47  E-value=4e-13  Score=108.95  Aligned_cols=106  Identities=21%  Similarity=0.180  Sum_probs=84.6

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcC-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC----CCCCe
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMG-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP----DAAPY  203 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~f  203 (299)
                      ..++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.++++++.+    ....+++++++|+.....    ..++|
T Consensus        42 ~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~f  117 (187)
T 2fhp_A           42 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAIT----KEPEKFEVRKMDANRALEQFYEEKLQF  117 (187)
T ss_dssp             CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHH----TCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred             hcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHh----CCCcceEEEECcHHHHHHHHHhcCCCC
Confidence            3568899999999999999888876 58999999999999999999873    223579999999875321    14679


Q ss_pred             eEEEecchhh-----hHHHHH--HHhccCCcEEEEEecCCCC
Q psy7837         204 DVIYISQAIR-----DIPWHI--VDQLKLGGRMLFIKGHEDD  238 (299)
Q Consensus       204 D~v~~~~~~~-----~~~~~~--~~~L~~gG~lv~~~~~~~~  238 (299)
                      |+|+++.++.     .....+  .++|+|||.+++..+....
T Consensus       118 D~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~  159 (187)
T 2fhp_A          118 DLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKTVK  159 (187)
T ss_dssp             EEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred             CEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCCccc
Confidence            9999998743     233455  7789999999999877653

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.47  E-value=3.8e-13  Score=116.22  Aligned_cols=104  Identities=20%  Similarity=0.129  Sum_probs=89.4

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCee
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYD  204 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  204 (299)
                      ..+.++.+|||+|||+|.+++.+++.+  .+|+++|+++.+++.+++|++.     ....++.++.+|+... +..++||
T Consensus       115 ~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~-----n~l~~~~~~~~d~~~~-~~~~~~D  188 (272)
T 3a27_A          115 FISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKL-----NKLNNVIPILADNRDV-ELKDVAD  188 (272)
T ss_dssp             TSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHH-----TTCSSEEEEESCGGGC-CCTTCEE
T ss_pred             HhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-----cCCCCEEEEECChHHc-CccCCce
Confidence            346788999999999999999999884  4899999999999999999988     4556899999999876 3356899


Q ss_pred             EEEecchh--hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         205 VIYISQAI--RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       205 ~v~~~~~~--~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +|+++.+.  ..+...+.+.|+|||++++++...
T Consensus       189 ~Vi~d~p~~~~~~l~~~~~~LkpgG~l~~s~~~~  222 (272)
T 3a27_A          189 RVIMGYVHKTHKFLDKTFEFLKDRGVIHYHETVA  222 (272)
T ss_dssp             EEEECCCSSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             EEEECCcccHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence            99999874  556788999999999999988654

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.46  E-value=4.2e-13  Score=110.78  Aligned_cols=101  Identities=19%  Similarity=0.168  Sum_probs=85.1

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      +.++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++++.     ....+++++.+|+....  .++||+|+
T Consensus        58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~v~~~~~d~~~~~--~~~fD~i~  130 (205)
T 3grz_A           58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAAL-----NGIYDIALQKTSLLADV--DGKFDLIV  130 (205)
T ss_dssp             CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH-----TTCCCCEEEESSTTTTC--CSCEEEEE
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-----cCCCceEEEeccccccC--CCCceEEE
Confidence            35688999999999999999999865 899999999999999999987     34455999999987643  36899999


Q ss_pred             ecchhhhHH---HHHHHhccCCcEEEEEecCC
Q psy7837         208 ISQAIRDIP---WHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       208 ~~~~~~~~~---~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ++.+++++.   +++.++|+|||++++.....
T Consensus       131 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  162 (205)
T 3grz_A          131 ANILAEILLDLIPQLDSHLNEDGQVIFSGIDY  162 (205)
T ss_dssp             EESCHHHHHHHGGGSGGGEEEEEEEEEEEEEG
T ss_pred             ECCcHHHHHHHHHHHHHhcCCCCEEEEEecCc
Confidence            998887653   57888999999999975443

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.46  E-value=8.9e-13  Score=112.24  Aligned_cols=100  Identities=19%  Similarity=0.213  Sum_probs=83.0

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      ..++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.+++++...      ..++.++++|+...... ++||+|++
T Consensus        39 ~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~------~~~v~~~~~d~~~~~~~-~~fD~v~~  111 (252)
T 1wzn_A           39 KREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKER------NLKIEFLQGDVLEIAFK-NEFDAVTM  111 (252)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCCEEEESCGGGCCCC-SCEEEEEE
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhc------CCceEEEECChhhcccC-CCccEEEE
Confidence            356789999999999999999999999999999999999999998762      23799999999875443 67999997


Q ss_pred             cch-h--------hhHHHHHHHhccCCcEEEEEecC
Q psy7837         209 SQA-I--------RDIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       209 ~~~-~--------~~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ... .        ..+.+++.++|+|||.+++..++
T Consensus       112 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~  147 (252)
T 1wzn_A          112 FFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (252)
T ss_dssp             CSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence            532 2        23446889999999999998765

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.46  E-value=4.7e-13  Score=117.11  Aligned_cols=100  Identities=21%  Similarity=0.286  Sum_probs=83.7

Q ss_pred             CCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCC---CCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALA---ENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       132 ~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      +.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++...     ..   .+++++++|+..... .++||+|++
T Consensus        83 ~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~  156 (299)
T 3g2m_A           83 SGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEA-----PADVRDRCTLVQGDMSAFAL-DKRFGTVVI  156 (299)
T ss_dssp             CSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTS-----CHHHHTTEEEEECBTTBCCC-SCCEEEEEE
T ss_pred             CCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhc-----ccccccceEEEeCchhcCCc-CCCcCEEEE
Confidence            459999999999999999999999999999999999999998762     21   689999999987544 578999986


Q ss_pred             cc-hhh--------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837         209 SQ-AIR--------DIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       209 ~~-~~~--------~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      .. .++        .+.+++.++|+|||.|++.+....
T Consensus       157 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  194 (299)
T 3g2m_A          157 SSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSE  194 (299)
T ss_dssp             CHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred             CCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence            53 332        344689999999999999987654

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.46  E-value=3.4e-13  Score=108.61  Aligned_cols=106  Identities=15%  Similarity=0.155  Sum_probs=84.6

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcC-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-CCCCCeeEE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMG-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-PDAAPYDVI  206 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v  206 (299)
                      ..++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.++++++.+    ....+++++.+|+.... ...++||+|
T Consensus        29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~----~~~~~~~~~~~d~~~~~~~~~~~fD~i  104 (177)
T 2esr_A           29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMT----KAENRFTLLKMEAERAIDCLTGRFDLV  104 (177)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTT----TCGGGEEEECSCHHHHHHHBCSCEEEE
T ss_pred             hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHc----CCCCceEEEECcHHHhHHhhcCCCCEE
Confidence            5678899999999999999999886 58999999999999999999873    22347999999987521 122569999


Q ss_pred             Eecchhh-----hHHHHHH--HhccCCcEEEEEecCCCC
Q psy7837         207 YISQAIR-----DIPWHIV--DQLKLGGRMLFIKGHEDD  238 (299)
Q Consensus       207 ~~~~~~~-----~~~~~~~--~~L~~gG~lv~~~~~~~~  238 (299)
                      +++.++.     ...+.+.  ++|+|||.+++.......
T Consensus       105 ~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~  143 (177)
T 2esr_A          105 FLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKTVL  143 (177)
T ss_dssp             EECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred             EECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECCccc
Confidence            9997753     2334555  889999999999877653

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.46  E-value=7.5e-13  Score=118.05  Aligned_cols=107  Identities=25%  Similarity=0.320  Sum_probs=86.1

Q ss_pred             HHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC
Q psy7837         119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY  197 (299)
Q Consensus       119 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  197 (299)
                      +.+.+.......++.+|||+|||+|.++..+++.+. +|+++|+++ +++.++++++.+    +...+++++.+|+....
T Consensus        52 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~----~~~~~i~~~~~d~~~~~  126 (340)
T 2fyt_A           52 YRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLN----KLEDTITLIKGKIEEVH  126 (340)
T ss_dssp             HHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHT----TCTTTEEEEESCTTTSC
T ss_pred             HHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHc----CCCCcEEEEEeeHHHhc
Confidence            334455555667899999999999999999999976 799999997 999999998874    33478999999998755


Q ss_pred             CCCCCeeEEEecch---h------hhHHHHHHHhccCCcEEE
Q psy7837         198 PDAAPYDVIYISQA---I------RDIPWHIVDQLKLGGRML  230 (299)
Q Consensus       198 ~~~~~fD~v~~~~~---~------~~~~~~~~~~L~~gG~lv  230 (299)
                      .+.++||+|+++..   +      ..+..++.++|||||.++
T Consensus       127 ~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          127 LPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             CSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             CCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            55578999998762   2      235567789999999987

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.46  E-value=4.8e-13  Score=115.77  Aligned_cols=118  Identities=19%  Similarity=0.167  Sum_probs=88.1

Q ss_pred             CcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhccc
Q psy7837          50 SPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHL  129 (299)
Q Consensus        50 ~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~  129 (299)
                      .|.....+++.+.  +.++.+|||+|||+|.++..+++.+.+.++++++|+++.+++.+++++..               
T Consensus        95 ~~~~~~~~~~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~---------------  157 (275)
T 1yb2_A           95 SEIDASYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSE---------------  157 (275)
T ss_dssp             -----------CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHT---------------
T ss_pred             ChhhHHHHHHHcC--CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHh---------------
Confidence            3333344555544  78999999999999999999998876667888888888888888877765               


Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCccc-CCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIA-LAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                                                                         . +..+++++.+|+.... ..++||+|++
T Consensus       158 ---------------------------------------------------~~g~~~v~~~~~d~~~~~-~~~~fD~Vi~  185 (275)
T 1yb2_A          158 ---------------------------------------------------FYDIGNVRTSRSDIADFI-SDQMYDAVIA  185 (275)
T ss_dssp             ---------------------------------------------------TSCCTTEEEECSCTTTCC-CSCCEEEEEE
T ss_pred             ---------------------------------------------------cCCCCcEEEEECchhccC-cCCCccEEEE
Confidence                                                               3 4568999999998743 3468999999


Q ss_pred             cchh-hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         209 SQAI-RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       209 ~~~~-~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +..- ..+.+++.++|+|||++++..+..
T Consensus       186 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  214 (275)
T 1yb2_A          186 DIPDPWNHVQKIASMMKPGSVATFYLPNF  214 (275)
T ss_dssp             CCSCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred             cCcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            7653 357789999999999999998765

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.45  E-value=6.4e-13  Score=110.89  Aligned_cols=111  Identities=23%  Similarity=0.291  Sum_probs=87.0

Q ss_pred             HHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEE
Q psy7837          58 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLD  137 (299)
Q Consensus        58 ~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLD  137 (299)
                      ++.+.+.+.+|++|+|+|||+|+++..++.. ++.++++++|+++..++.|++++...                      
T Consensus         6 L~~l~~~v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~----------------------   62 (225)
T 3kr9_A            6 LELVASFVSQGAILLDVGSDHAYLPIELVER-GQIKSAIAGEVVEGPYQSAVKNVEAH----------------------   62 (225)
T ss_dssp             HHHHHTTSCTTEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHT----------------------
T ss_pred             HHHHHHhCCCCCEEEEeCCCcHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHc----------------------
Confidence            4455666889999999999999999999875 45567888888888888888887762                      


Q ss_pred             EcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecch----hh
Q psy7837         138 IGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQA----IR  213 (299)
Q Consensus       138 iG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~----~~  213 (299)
                                                                 +...+++++.+|.........+||+|++.+.    +.
T Consensus        63 -------------------------------------------gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~Gg~~i~   99 (225)
T 3kr9_A           63 -------------------------------------------GLKEKIQVRLANGLAAFEETDQVSVITIAGMGGRLIA   99 (225)
T ss_dssp             -------------------------------------------TCTTTEEEEECSGGGGCCGGGCCCEEEEEEECHHHHH
T ss_pred             -------------------------------------------CCCceEEEEECchhhhcccCcCCCEEEEcCCChHHHH
Confidence                                                       3445799999999765554336998876543    45


Q ss_pred             hHHHHHHHhccCCcEEEEEec
Q psy7837         214 DIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       214 ~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      .+.+.....|+++|+++++-.
T Consensus       100 ~Il~~~~~~L~~~~~lVlq~~  120 (225)
T 3kr9_A          100 RILEEGLGKLANVERLILQPN  120 (225)
T ss_dssp             HHHHHTGGGCTTCCEEEEEES
T ss_pred             HHHHHHHHHhCCCCEEEEECC
Confidence            677888999999999999765

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.45  E-value=5.2e-13  Score=114.05  Aligned_cols=98  Identities=20%  Similarity=0.216  Sum_probs=84.1

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      ...++.+|||+|||+|.++..+++.  +.+++++|+++.+++.++++          ..++.++.+|+.... ..++||+
T Consensus        30 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~----------~~~~~~~~~d~~~~~-~~~~fD~   98 (259)
T 2p35_A           30 PLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR----------LPNTNFGKADLATWK-PAQKADL   98 (259)
T ss_dssp             CCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH----------STTSEEEECCTTTCC-CSSCEEE
T ss_pred             CCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh----------CCCcEEEECChhhcC-ccCCcCE
Confidence            4567889999999999999999988  88999999999999999876          247899999998755 5578999


Q ss_pred             EEecchhhhH------HHHHHHhccCCcEEEEEecCC
Q psy7837         206 IYISQAIRDI------PWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       206 v~~~~~~~~~------~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      |++..+++++      .+++.++|+|||.+++..+..
T Consensus        99 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  135 (259)
T 2p35_A           99 LYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDN  135 (259)
T ss_dssp             EEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred             EEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence            9999987654      357899999999999988643

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.45  E-value=1.8e-13  Score=117.47  Aligned_cols=97  Identities=22%  Similarity=0.240  Sum_probs=81.8

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      ...++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.++++           .+++++++|+.....+.++||+|+
T Consensus        31 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~~d~~~~~~~~~~fD~v~   99 (261)
T 3ege_A           31 NLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVH-----------PQVEWFTGYAENLALPDKSVDGVI   99 (261)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCC-----------TTEEEECCCTTSCCSCTTCBSEEE
T ss_pred             CCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhc-----------cCCEEEECchhhCCCCCCCEeEEE
Confidence            346789999999999999999999999999999999998876543           289999999987655568899999


Q ss_pred             ecchhhh------HHHHHHHhccCCcEEEEEecCC
Q psy7837         208 ISQAIRD------IPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       208 ~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +..++++      +.+++.++|| ||.+++.....
T Consensus       100 ~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~  133 (261)
T 3ege_A          100 SILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDI  133 (261)
T ss_dssp             EESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECG
T ss_pred             EcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCC
Confidence            9998765      3468999999 99888876553

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.45  E-value=6.5e-13  Score=111.05  Aligned_cols=112  Identities=21%  Similarity=0.322  Sum_probs=87.9

Q ss_pred             HHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEE
Q psy7837          58 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLD  137 (299)
Q Consensus        58 ~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLD  137 (299)
                      ++.+...+.+|++|+|+|||+|+++..+++. ++..+++++|+++..++.|++++...                      
T Consensus        12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~AvDi~~~al~~A~~N~~~~----------------------   68 (230)
T 3lec_A           12 LQKVANYVPKGARLLDVGSDHAYLPIFLLQM-GYCDFAIAGEVVNGPYQSALKNVSEH----------------------   68 (230)
T ss_dssp             HHHHHTTSCTTEEEEEETCSTTHHHHHHHHT-TCEEEEEEEESSHHHHHHHHHHHHHT----------------------
T ss_pred             HHHHHHhCCCCCEEEEECCchHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHc----------------------
Confidence            3455666889999999999999999999876 44567888888888888888887762                      


Q ss_pred             EcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecch----hh
Q psy7837         138 IGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQA----IR  213 (299)
Q Consensus       138 iG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~----~~  213 (299)
                                                                 +...+++++.+|......+..+||+|++.+.    +.
T Consensus        69 -------------------------------------------gl~~~I~~~~gD~l~~~~~~~~~D~IviaGmGg~lI~  105 (230)
T 3lec_A           69 -------------------------------------------GLTSKIDVRLANGLSAFEEADNIDTITICGMGGRLIA  105 (230)
T ss_dssp             -------------------------------------------TCTTTEEEEECSGGGGCCGGGCCCEEEEEEECHHHHH
T ss_pred             -------------------------------------------CCCCcEEEEECchhhccccccccCEEEEeCCchHHHH
Confidence                                                       3456799999999876655447999875543    45


Q ss_pred             hHHHHHHHhccCCcEEEEEecC
Q psy7837         214 DIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       214 ~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      .+.+.....|+++|+|+++-..
T Consensus       106 ~IL~~~~~~l~~~~~lIlqp~~  127 (230)
T 3lec_A          106 DILNNDIDKLQHVKTLVLQPNN  127 (230)
T ss_dssp             HHHHHTGGGGTTCCEEEEEESS
T ss_pred             HHHHHHHHHhCcCCEEEEECCC
Confidence            6667888899999999988754

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.45  E-value=7.2e-13  Score=116.90  Aligned_cols=106  Identities=15%  Similarity=0.162  Sum_probs=87.1

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY  144 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~  144 (299)
                      +++|++|||+|||+|..+..+++.++..++++++|+++.+++.+++++..                              
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~------------------------------  165 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSR------------------------------  165 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH------------------------------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHH------------------------------
Confidence            88999999999999999999999887778899999999999988888876                              


Q ss_pred             HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchh------------
Q psy7837         145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAI------------  212 (299)
Q Consensus       145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~------------  212 (299)
                                                          .+..++.++++|+.......++||+|+++.+.            
T Consensus       166 ------------------------------------~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~  209 (315)
T 1ixk_A          166 ------------------------------------LGVLNVILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPER  209 (315)
T ss_dssp             ------------------------------------HTCCSEEEESSCGGGGGGGCCCEEEEEEECCTTSTTTCC-----
T ss_pred             ------------------------------------hCCCeEEEEECChhhcccccccCCEEEEeCCCCCcccccCChhH
Confidence                                                34558999999987643334679999997652            


Q ss_pred             ----------------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         213 ----------------RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       213 ----------------~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                                      ..+.+++.++|||||++++++...
T Consensus       210 ~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~  249 (315)
T 1ixk_A          210 KWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  249 (315)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             hhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence                            244568899999999999976543

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.45  E-value=3.2e-13  Score=112.96  Aligned_cols=104  Identities=19%  Similarity=0.246  Sum_probs=84.4

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC-----
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD-----  199 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-----  199 (299)
                      ...++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.++++++..    +...+++++.+|+......     
T Consensus        55 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~----~~~~~v~~~~~d~~~~~~~~~~~~  130 (223)
T 3duw_A           55 QIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERA----NLNDRVEVRTGLALDSLQQIENEK  130 (223)
T ss_dssp             HHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHT----TCTTTEEEEESCHHHHHHHHHHTT
T ss_pred             HhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc----CCCCcEEEEEcCHHHHHHHHHhcC
Confidence            3456899999999999999999987   789999999999999999999873    3345699999998643211     


Q ss_pred             CCCeeEEEecchhhh---HHHHHHHhccCCcEEEEEecC
Q psy7837         200 AAPYDVIYISQAIRD---IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       200 ~~~fD~v~~~~~~~~---~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      .++||+|+++.....   +.+.+.++|+|||.+++....
T Consensus       131 ~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~  169 (223)
T 3duw_A          131 YEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVV  169 (223)
T ss_dssp             CCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred             CCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            156999999987654   456889999999998886543

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.45  E-value=7.3e-13  Score=114.70  Aligned_cols=99  Identities=26%  Similarity=0.377  Sum_probs=84.8

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      ...++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.++++.          .++.++.+|+..... .++||+|+
T Consensus        54 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~----------~~~~~~~~d~~~~~~-~~~fD~v~  122 (279)
T 3ccf_A           54 NPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY----------PHLHFDVADARNFRV-DKPLDAVF  122 (279)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----------TTSCEEECCTTTCCC-SSCEEEEE
T ss_pred             CCCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC----------CCCEEEECChhhCCc-CCCcCEEE
Confidence            3467889999999999999999999999999999999999998763          478899999987544 47899999


Q ss_pred             ecchhhh------HHHHHHHhccCCcEEEEEecCCC
Q psy7837         208 ISQAIRD------IPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       208 ~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      +..++++      +.+++.++|+|||++++..+...
T Consensus       123 ~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~  158 (279)
T 3ccf_A          123 SNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKG  158 (279)
T ss_dssp             EESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             EcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCc
Confidence            9998865      44689999999999999887643

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.45  E-value=5.6e-13  Score=113.50  Aligned_cols=101  Identities=21%  Similarity=0.192  Sum_probs=85.4

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcC-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMG-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI  206 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  206 (299)
                      ...++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.+++++..     .  .++.++++|+.......++||+|
T Consensus        90 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~--~~~~~~~~d~~~~~~~~~~fD~v  162 (254)
T 1xtp_A           90 PGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG-----M--PVGKFILASMETATLPPNTYDLI  162 (254)
T ss_dssp             TTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT-----S--SEEEEEESCGGGCCCCSSCEEEE
T ss_pred             cccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhcc-----C--CceEEEEccHHHCCCCCCCeEEE
Confidence            34578899999999999999998874 5699999999999999998754     2  68999999988755555789999


Q ss_pred             EecchhhhH--------HHHHHHhccCCcEEEEEecC
Q psy7837         207 YISQAIRDI--------PWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       207 ~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ++..+++++        .+++.++|+|||.+++..+.
T Consensus       163 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  199 (254)
T 1xtp_A          163 VIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENC  199 (254)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             EEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence            999887665        35789999999999998753

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.45  E-value=7.2e-13  Score=119.53  Aligned_cols=106  Identities=15%  Similarity=0.283  Sum_probs=86.2

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI  206 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  206 (299)
                      ..++.+|||+|||+|.++..+++.  +.+|+++|+|+.+++.++++++.++-  ....+++++.+|+..... .++||+|
T Consensus       220 ~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl--~~~~~v~~~~~D~~~~~~-~~~fD~I  296 (375)
T 4dcm_A          220 ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMP--EALDRCEFMINNALSGVE-PFRFNAV  296 (375)
T ss_dssp             CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCG--GGGGGEEEEECSTTTTCC-TTCEEEE
T ss_pred             ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCC--CcCceEEEEechhhccCC-CCCeeEE
Confidence            345689999999999999999988  67899999999999999999987410  012368899999987543 4689999


Q ss_pred             Eecchhh-----------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837         207 YISQAIR-----------DIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       207 ~~~~~~~-----------~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      +++.+++           .+.+++.++|+|||+++++.+...
T Consensus       297 i~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~  338 (375)
T 4dcm_A          297 LCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHL  338 (375)
T ss_dssp             EECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred             EECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCc
Confidence            9998865           245789999999999999876554

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.45  E-value=1.9e-13  Score=109.21  Aligned_cols=102  Identities=16%  Similarity=0.153  Sum_probs=84.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC----CCCCeeEE
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP----DAAPYDVI  206 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fD~v  206 (299)
                      ++.+|||+|||+|.++..+++.+..|+++|+++.+++.++++++.+     .. +++++++|+.....    ..++||+|
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~-----~~-~~~~~~~d~~~~~~~~~~~~~~~D~i  114 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRT-----GL-GARVVALPVEVFLPEAKAQGERFTVA  114 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHH-----TC-CCEEECSCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHc-----CC-ceEEEeccHHHHHHhhhccCCceEEE
Confidence            6889999999999999999999988999999999999999999873     33 89999999875221    12479999


Q ss_pred             Eecchh----hhHHHHHH--HhccCCcEEEEEecCCCC
Q psy7837         207 YISQAI----RDIPWHIV--DQLKLGGRMLFIKGHEDD  238 (299)
Q Consensus       207 ~~~~~~----~~~~~~~~--~~L~~gG~lv~~~~~~~~  238 (299)
                      +++.++    ..+.+.+.  ++|+|||.+++.+.....
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~  152 (171)
T 1ws6_A          115 FMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKDLY  152 (171)
T ss_dssp             EECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred             EECCCCchhHHHHHHHHHhhcccCCCcEEEEEeCCccC
Confidence            999765    34556666  899999999999887653

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.44  E-value=3.6e-13  Score=113.09  Aligned_cols=93  Identities=20%  Similarity=0.251  Sum_probs=81.0

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC-CCCC-CCCeeEEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR-GYPD-AAPYDVIY  207 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~~fD~v~  207 (299)
                      .++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++          ..+++++++|+.. .... .++||+|+
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~d~~~~~~~~~~~~fD~v~  116 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN----------APHADVYEWNGKGELPAGLGAPFGLIV  116 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH----------CTTSEEEECCSCSSCCTTCCCCEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh----------CCCceEEEcchhhccCCcCCCCEEEEE
Confidence            5689999999999999999999999999999999999999887          2378999999953 3333 57899999


Q ss_pred             ecchhhhHHHHHHHhccCCcEEEEE
Q psy7837         208 ISQAIRDIPWHIVDQLKLGGRMLFI  232 (299)
Q Consensus       208 ~~~~~~~~~~~~~~~L~~gG~lv~~  232 (299)
                      ++.....+.+++.++|||||.++..
T Consensus       117 ~~~~~~~~l~~~~~~LkpgG~l~~~  141 (226)
T 3m33_A          117 SRRGPTSVILRLPELAAPDAHFLYV  141 (226)
T ss_dssp             EESCCSGGGGGHHHHEEEEEEEEEE
T ss_pred             eCCCHHHHHHHHHHHcCCCcEEEEe
Confidence            9977778888999999999999933

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.44  E-value=2.2e-12  Score=109.50  Aligned_cols=110  Identities=22%  Similarity=0.309  Sum_probs=91.9

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCC
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAP  202 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  202 (299)
                      +.....+.++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++++..    ....++++..+|+.......++
T Consensus        83 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~----~~~~~~~~~~~d~~~~~~~~~~  158 (248)
T 2yvl_A           83 IALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKF----NLGKNVKFFNVDFKDAEVPEGI  158 (248)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHT----TCCTTEEEECSCTTTSCCCTTC
T ss_pred             HHHhcCCCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHc----CCCCcEEEEEcChhhcccCCCc
Confidence            333445678999999999999999999988889999999999999999998773    2336899999999875524468


Q ss_pred             eeEEEecchhh-hHHHHHHHhccCCcEEEEEecCC
Q psy7837         203 YDVIYISQAIR-DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       203 fD~v~~~~~~~-~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ||+|+++..-. .+.+++.++|+|||++++..+..
T Consensus       159 ~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  193 (248)
T 2yvl_A          159 FHAAFVDVREPWHYLEKVHKSLMEGAPVGFLLPTA  193 (248)
T ss_dssp             BSEEEECSSCGGGGHHHHHHHBCTTCEEEEEESSH
T ss_pred             ccEEEECCcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            99999987644 67789999999999999998864

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.44  E-value=1.7e-13  Score=115.94  Aligned_cols=98  Identities=17%  Similarity=0.122  Sum_probs=78.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcC-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC--CCCCCCeeEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMG-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG--YPDAAPYDVI  206 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~v  206 (299)
                      .+|.+|||||||+|..+..+++.. .+++++|+|+.+++.|+++.+.      ...++.++.+|+...  ..+.++||.|
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~------~~~~~~~~~~~a~~~~~~~~~~~FD~i  132 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPR------QTHKVIPLKGLWEDVAPTLPDGHFDGI  132 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGG------CSSEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhh------CCCceEEEeehHHhhcccccccCCceE
Confidence            458999999999999999998874 6799999999999999998876      345788888887632  2345789999


Q ss_pred             Eecchh-----h------hHHHHHHHhccCCcEEEEEe
Q psy7837         207 YISQAI-----R------DIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       207 ~~~~~~-----~------~~~~~~~~~L~~gG~lv~~~  233 (299)
                      +.+...     .      .+.+++.++|||||+|++..
T Consensus       133 ~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          133 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             EECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             EEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            876542     1      24468999999999998753

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.44  E-value=7.4e-13  Score=118.52  Aligned_cols=106  Identities=23%  Similarity=0.238  Sum_probs=85.4

Q ss_pred             HHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC
Q psy7837         121 KRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD  199 (299)
Q Consensus       121 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  199 (299)
                      +.+.....+.++.+|||+|||+|.++..+++.+. +|+++|+|+ +++.|+++++.+    +...+++++.+|+.....+
T Consensus        56 ~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~----~~~~~v~~~~~d~~~~~~~  130 (349)
T 3q7e_A           56 NSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKAN----KLDHVVTIIKGKVEEVELP  130 (349)
T ss_dssp             HHHHTCHHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHT----TCTTTEEEEESCTTTCCCS
T ss_pred             HHHHhccccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHc----CCCCcEEEEECcHHHccCC
Confidence            3444444567899999999999999999999976 899999995 999999999874    3445699999999876555


Q ss_pred             CCCeeEEEecch---------hhhHHHHHHHhccCCcEEEE
Q psy7837         200 AAPYDVIYISQA---------IRDIPWHIVDQLKLGGRMLF  231 (299)
Q Consensus       200 ~~~fD~v~~~~~---------~~~~~~~~~~~L~~gG~lv~  231 (299)
                      .++||+|++...         +..+..++.++|||||+++.
T Consensus       131 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          131 VEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             SSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             CCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence            578999998653         23455678899999999874

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.44  E-value=1.8e-12  Score=107.06  Aligned_cols=100  Identities=17%  Similarity=0.204  Sum_probs=84.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      ++.+|||+|||+|.++..++..  +.+++++|+++.+++.+++++..     ....+++++.+|+.... ..++||+|++
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~v~~~~~d~~~~~-~~~~~D~i~~  138 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHE-----LKLENIEPVQSRVEEFP-SEPPFDGVIS  138 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH-----TTCSSEEEEECCTTTSC-CCSCEEEEEC
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-----cCCCCeEEEecchhhCC-ccCCcCEEEE
Confidence            5789999999999999999876  67899999999999999999887     34556999999998754 3368999998


Q ss_pred             cch--hhhHHHHHHHhccCCcEEEEEecCC
Q psy7837         209 SQA--IRDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       209 ~~~--~~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +..  ...+.+.+.++|+|||.+++..+..
T Consensus       139 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  168 (207)
T 1jsx_A          139 RAFASLNDMVSWCHHLPGEQGRFYALKGQM  168 (207)
T ss_dssp             SCSSSHHHHHHHHTTSEEEEEEEEEEESSC
T ss_pred             eccCCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            753  2446678999999999999987654

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.44  E-value=1.3e-12  Score=112.03  Aligned_cols=93  Identities=13%  Similarity=0.077  Sum_probs=80.6

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS  209 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  209 (299)
                      .++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.+++++          .++.++++|+..... .++||+|++.
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~----------~~~~~~~~d~~~~~~-~~~fD~v~~~  117 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRN----------PDAVLHHGDMRDFSL-GRRFSAVTCM  117 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHC----------TTSEEEECCTTTCCC-SCCEEEEEEC
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhC----------CCCEEEECChHHCCc-cCCcCEEEEc
Confidence            45789999999999999999999999999999999999998873          278999999987544 5789999998


Q ss_pred             c-hhhhH---------HHHHHHhccCCcEEEEEe
Q psy7837         210 Q-AIRDI---------PWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       210 ~-~~~~~---------~~~~~~~L~~gG~lv~~~  233 (299)
                      . +++++         .+++.++|+|||.+++..
T Consensus       118 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~  151 (263)
T 3pfg_A          118 FSSIGHLAGQAELDAALERFAAHVLPDGVVVVEP  151 (263)
T ss_dssp             TTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             CchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            7 76554         357899999999999974

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.43  E-value=5.4e-13  Score=114.52  Aligned_cols=105  Identities=16%  Similarity=0.183  Sum_probs=85.2

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHh---cCCcccCCCCeEEEEcCCCCCC-----
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRR---GAPAIALAENFEFVCADGRRGY-----  197 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~---~~~~~~~~~~v~~~~~d~~~~~-----  197 (299)
                      ...++.+|||+|||+|.+++.+++..  .+|+++|+++.+++.++++++.   +    ....+++++++|+....     
T Consensus        33 ~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~----~l~~~v~~~~~D~~~~~~~~~~  108 (260)
T 2ozv_A           33 ADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNA----AFSARIEVLEADVTLRAKARVE  108 (260)
T ss_dssp             CCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGT----TTGGGEEEEECCTTCCHHHHHH
T ss_pred             cccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhC----CCcceEEEEeCCHHHHhhhhhh
Confidence            45568899999999999999999874  6899999999999999999865   4    33457999999998651     


Q ss_pred             --CCCCCeeEEEecchhh------------------------hHHHHHHHhccCCcEEEEEecCC
Q psy7837         198 --PDAAPYDVIYISQAIR------------------------DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       198 --~~~~~fD~v~~~~~~~------------------------~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                        ...++||+|++++++.                        .+.+.+.++|+|||++++..+..
T Consensus       109 ~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  173 (260)
T 2ozv_A          109 AGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ  173 (260)
T ss_dssp             TTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred             hccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH
Confidence              2347899999985542                        34567889999999999987654

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.43  E-value=6.1e-13  Score=119.44  Aligned_cols=108  Identities=26%  Similarity=0.294  Sum_probs=85.7

Q ss_pred             HHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC
Q psy7837         118 TYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG  196 (299)
Q Consensus       118 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  196 (299)
                      +|.+.|.......++++|||||||+|.+++.+++.|+ +|+++|.|+ +++.|+++++.|    +...+++++.+|+...
T Consensus        70 aY~~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n----~~~~~i~~i~~~~~~~  144 (376)
T 4hc4_A           70 AYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFN----GLEDRVHVLPGPVETV  144 (376)
T ss_dssp             HHHHHHHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHT----TCTTTEEEEESCTTTC
T ss_pred             HHHHHHHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHc----CCCceEEEEeeeeeee
Confidence            4455565555667899999999999999999999987 599999996 789999999885    5667899999999875


Q ss_pred             CCCCCCeeEEEecch---------hhhHHHHHHHhccCCcEEEE
Q psy7837         197 YPDAAPYDVIYISQA---------IRDIPWHIVDQLKLGGRMLF  231 (299)
Q Consensus       197 ~~~~~~fD~v~~~~~---------~~~~~~~~~~~L~~gG~lv~  231 (299)
                      ..+ .++|+|++...         +..+.....++|+|||.++-
T Consensus       145 ~lp-e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          145 ELP-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             CCS-SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             cCC-ccccEEEeecccccccccchhhhHHHHHHhhCCCCceECC
Confidence            444 67999997332         23445567799999998764

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.43  E-value=1.9e-13  Score=114.45  Aligned_cols=104  Identities=18%  Similarity=0.229  Sum_probs=84.3

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC---C--
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP---D--  199 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~--  199 (299)
                      ...++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.++++++..    +...+++++++|+.....   .  
T Consensus        61 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~----~~~~~v~~~~~d~~~~~~~~~~~~  136 (225)
T 3tr6_A           61 KLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKA----GLSDKIGLRLSPAKDTLAELIHAG  136 (225)
T ss_dssp             HHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHT----TCTTTEEEEESCHHHHHHHHHTTT
T ss_pred             HhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHC----CCCCceEEEeCCHHHHHHHhhhcc
Confidence            3456889999999999999999987   788999999999999999999873    234569999999864221   1  


Q ss_pred             -CCCeeEEEecchhh---hHHHHHHHhccCCcEEEEEecC
Q psy7837         200 -AAPYDVIYISQAIR---DIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       200 -~~~fD~v~~~~~~~---~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                       .++||+|+++....   .+.+.+.++|+|||++++....
T Consensus       137 ~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~  176 (225)
T 3tr6_A          137 QAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVL  176 (225)
T ss_dssp             CTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             CCCCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence             16799999988754   3457889999999999986543

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.43  E-value=3.4e-13  Score=114.21  Aligned_cols=121  Identities=20%  Similarity=0.265  Sum_probs=92.2

Q ss_pred             cccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhh
Q psy7837          46 AFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINF  125 (299)
Q Consensus        46 ~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~  125 (299)
                      +....|.....+...+.  +.++.+|||+|||+|+.+..+++.+++.++++++|+++.+++.+++++...          
T Consensus        41 ~~~~~~~~~~~l~~l~~--~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~----------  108 (239)
T 2hnk_A           41 NMQISPEEGQFLNILTK--ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKEN----------  108 (239)
T ss_dssp             CCSCCHHHHHHHHHHHH--HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT----------
T ss_pred             ccccCHHHHHHHHHHHH--hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc----------
Confidence            34566666555555444  678899999999999999999998876678999999999999988888762          


Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-------
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-------  198 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-------  198 (299)
                                                                             +...++.++.+|+....+       
T Consensus       109 -------------------------------------------------------g~~~~v~~~~~d~~~~~~~~~~~~~  133 (239)
T 2hnk_A          109 -------------------------------------------------------GLENKIFLKLGSALETLQVLIDSKS  133 (239)
T ss_dssp             -------------------------------------------------------TCGGGEEEEESCHHHHHHHHHHCSS
T ss_pred             -------------------------------------------------------CCCCCEEEEECCHHHHHHHHHhhcc
Confidence                                                                   122347788887653211       


Q ss_pred             --------C-C-CCeeEEEecchhhhH---HHHHHHhccCCcEEEEEe
Q psy7837         199 --------D-A-APYDVIYISQAIRDI---PWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       199 --------~-~-~~fD~v~~~~~~~~~---~~~~~~~L~~gG~lv~~~  233 (299)
                              + . ++||+|+++......   .+.+.++|+|||++++..
T Consensus       134 ~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          134 APSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             CCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence                    1 2 679999999877644   478999999999999975

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.43  E-value=1.1e-12  Score=110.68  Aligned_cols=112  Identities=18%  Similarity=0.222  Sum_probs=87.5

Q ss_pred             HHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEE
Q psy7837          58 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLD  137 (299)
Q Consensus        58 ~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLD  137 (299)
                      ++.+.+.+.+|++|||+|||+|+++..+++. ++..+++++|+++..++.|++++...                      
T Consensus        12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~----------------------   68 (244)
T 3gnl_A           12 LEKVASYITKNERIADIGSDHAYLPCFAVKN-QTASFAIAGEVVDGPFQSAQKQVRSS----------------------   68 (244)
T ss_dssp             HHHHHTTCCSSEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHT----------------------
T ss_pred             HHHHHHhCCCCCEEEEECCccHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHc----------------------
Confidence            4455666889999999999999999999876 44567888888888888888887762                      


Q ss_pred             EcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecch----hh
Q psy7837         138 IGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQA----IR  213 (299)
Q Consensus       138 iG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~----~~  213 (299)
                                                                 +...++++..+|......+..+||+|++.+.    +.
T Consensus        69 -------------------------------------------gl~~~I~v~~gD~l~~~~~~~~~D~IviagmGg~lI~  105 (244)
T 3gnl_A           69 -------------------------------------------GLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMGGTLIR  105 (244)
T ss_dssp             -------------------------------------------TCTTTEEEEECSGGGGCCGGGCCCEEEEEEECHHHHH
T ss_pred             -------------------------------------------CCCceEEEEecchhhccCccccccEEEEeCCchHHHH
Confidence                                                       3445799999999876654346999876543    55


Q ss_pred             hHHHHHHHhccCCcEEEEEecC
Q psy7837         214 DIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       214 ~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      .+.+.....|+++++|+++-..
T Consensus       106 ~IL~~~~~~L~~~~~lIlq~~~  127 (244)
T 3gnl_A          106 TILEEGAAKLAGVTKLILQPNI  127 (244)
T ss_dssp             HHHHHTGGGGTTCCEEEEEESS
T ss_pred             HHHHHHHHHhCCCCEEEEEcCC
Confidence            6777888999999999998654

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.43  E-value=4.2e-13  Score=117.83  Aligned_cols=105  Identities=17%  Similarity=0.079  Sum_probs=87.3

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHH--Hc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCe
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFA--YM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPY  203 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la--~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  203 (299)
                      ..+.++.+|||+|||+|.++..++  .. +.+|+++|+++.+++.+++++...    +...+++++++|+.....+ ++|
T Consensus       114 ~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~~v~~~~~d~~~~~~~-~~f  188 (305)
T 3ocj_A          114 RHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGH----ALAGQITLHRQDAWKLDTR-EGY  188 (305)
T ss_dssp             HHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTS----TTGGGEEEEECCGGGCCCC-SCE
T ss_pred             hhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhc----CCCCceEEEECchhcCCcc-CCe
Confidence            346788999999999999999985  22 678999999999999999998763    2344699999999876555 889


Q ss_pred             eEEEecchhhh---------HHHHHHHhccCCcEEEEEecCC
Q psy7837         204 DVIYISQAIRD---------IPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       204 D~v~~~~~~~~---------~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      |+|+++.++++         +.+++.++|+|||++++.....
T Consensus       189 D~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  230 (305)
T 3ocj_A          189 DLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP  230 (305)
T ss_dssp             EEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred             EEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence            99999887754         3578899999999999987554

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.43  E-value=2.7e-13  Score=114.79  Aligned_cols=101  Identities=17%  Similarity=0.183  Sum_probs=82.9

Q ss_pred             hhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC--CCCCCC
Q psy7837         125 FYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG--YPDAAP  202 (299)
Q Consensus       125 ~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~  202 (299)
                      .+..+.++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.++++             +.++.+|....  ....++
T Consensus        35 ~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-------------~~~~~~d~~~~~~~~~~~~  101 (240)
T 3dli_A           35 YIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK-------------FNVVKSDAIEYLKSLPDKY  101 (240)
T ss_dssp             GGGGTTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT-------------SEEECSCHHHHHHTSCTTC
T ss_pred             HHhhhcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh-------------cceeeccHHHHhhhcCCCC
Confidence            344467789999999999999999999999999999999999988652             67888887652  334478


Q ss_pred             eeEEEecchhhhH--------HHHHHHhccCCcEEEEEecCCCC
Q psy7837         203 YDVIYISQAIRDI--------PWHIVDQLKLGGRMLFIKGHEDD  238 (299)
Q Consensus       203 fD~v~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~~~~~  238 (299)
                      ||+|++..+++++        .+++.++|||||.+++..+....
T Consensus       102 fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  145 (240)
T 3dli_A          102 LDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTS  145 (240)
T ss_dssp             BSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTS
T ss_pred             eeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcch
Confidence            9999999887654        35889999999999999877543

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.43  E-value=1.3e-12  Score=113.61  Aligned_cols=101  Identities=21%  Similarity=0.234  Sum_probs=83.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCe---eEE
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPY---DVI  206 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f---D~v  206 (299)
                      ++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++|++.+    +...+++++++|+.....  ++|   |+|
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~----~l~~~v~~~~~D~~~~~~--~~f~~~D~I  196 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERH----GVSDRFFVRKGEFLEPFK--EKFASIEMI  196 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHT----TCTTSEEEEESSTTGGGG--GGTTTCCEE
T ss_pred             CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc----CCCCceEEEECcchhhcc--cccCCCCEE
Confidence            4679999999999999999988 789999999999999999999883    233459999999987433  468   999


Q ss_pred             Eecchhh-------------------------hHHHHHH-HhccCCcEEEEEecCCC
Q psy7837         207 YISQAIR-------------------------DIPWHIV-DQLKLGGRMLFIKGHED  237 (299)
Q Consensus       207 ~~~~~~~-------------------------~~~~~~~-~~L~~gG~lv~~~~~~~  237 (299)
                      +++++..                         .+.+++. +.|+|||.+++..+...
T Consensus       197 vsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q  253 (284)
T 1nv8_A          197 LSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQ  253 (284)
T ss_dssp             EECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTC
T ss_pred             EEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchH
Confidence            9985432                         3557888 99999999999877654

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.42  E-value=9.6e-13  Score=118.94  Aligned_cols=110  Identities=26%  Similarity=0.247  Sum_probs=89.3

Q ss_pred             HHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC
Q psy7837         118 TYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG  196 (299)
Q Consensus       118 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  196 (299)
                      .+.+.+.......++.+|||+|||+|.++..+++.|. +|+++|.+ .+++.++++++.+    +...+++++.+|+...
T Consensus        50 ~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~----~~~~~v~~~~~d~~~~  124 (376)
T 3r0q_C           50 AYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKAN----NLDHIVEVIEGSVEDI  124 (376)
T ss_dssp             HHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHT----TCTTTEEEEESCGGGC
T ss_pred             HHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHc----CCCCeEEEEECchhhc
Confidence            3445555556678899999999999999999999987 89999999 9999999999874    3456799999999875


Q ss_pred             CCCCCCeeEEEecchh---------hhHHHHHHHhccCCcEEEEEe
Q psy7837         197 YPDAAPYDVIYISQAI---------RDIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       197 ~~~~~~fD~v~~~~~~---------~~~~~~~~~~L~~gG~lv~~~  233 (299)
                      ..+ ++||+|+++...         ..+..++.++|+|||.+++..
T Consensus       125 ~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~  169 (376)
T 3r0q_C          125 SLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH  169 (376)
T ss_dssp             CCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred             CcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence            544 789999996532         235567889999999997753

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.42  E-value=7.7e-13  Score=110.65  Aligned_cols=116  Identities=13%  Similarity=0.158  Sum_probs=87.9

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCe
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSK  134 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  134 (299)
                      ..++..+.. ..++.+|||+|||+|+.+..+++.+++.++++++|+++.+++.+++++...                   
T Consensus        47 ~~~l~~l~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------------------  106 (221)
T 3u81_A           47 GQIMDAVIR-EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFA-------------------  106 (221)
T ss_dssp             HHHHHHHHH-HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH-------------------
T ss_pred             HHHHHHHHH-hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHc-------------------
Confidence            444444442 567899999999999999999998776788999999999999888888762                   


Q ss_pred             EEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---C---CCCCeeEEEe
Q psy7837         135 VLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---P---DAAPYDVIYI  208 (299)
Q Consensus       135 vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~---~~~~fD~v~~  208 (299)
                                                                    +...+++++.+|+....   .   ..++||+|++
T Consensus       107 ----------------------------------------------~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~  140 (221)
T 3u81_A          107 ----------------------------------------------GLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFL  140 (221)
T ss_dssp             ----------------------------------------------TCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEE
T ss_pred             ----------------------------------------------CCCCceEEEECCHHHHHHHHHHhcCCCceEEEEE
Confidence                                                          23457999999975321   1   1157999999


Q ss_pred             cchhhhHHH------HHHHhccCCcEEEEEecCCC
Q psy7837         209 SQAIRDIPW------HIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       209 ~~~~~~~~~------~~~~~L~~gG~lv~~~~~~~  237 (299)
                      +....+...      .+ ++|+|||++++......
T Consensus       141 d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~~  174 (221)
T 3u81_A          141 DHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIVP  174 (221)
T ss_dssp             CSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCCC
T ss_pred             cCCcccchHHHHHHHhc-cccCCCeEEEEeCCCCc
Confidence            987765542      23 89999999999765543

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.42  E-value=6.8e-13  Score=111.81  Aligned_cols=120  Identities=23%  Similarity=0.252  Sum_probs=93.5

Q ss_pred             cccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhh
Q psy7837          46 AFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINF  125 (299)
Q Consensus        46 ~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~  125 (299)
                      ..+..|.....+...+.  ..++.+|||+|||+|+.+..+++..+ .++++++|+++.+++.+++++...          
T Consensus        35 ~~~~~~~~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~----------  101 (233)
T 2gpy_A           35 VPIMDLLGMESLLHLLK--MAAPARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKAL----------  101 (233)
T ss_dssp             CCCCCHHHHHHHHHHHH--HHCCSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHT----------
T ss_pred             CCCcCHHHHHHHHHHHh--ccCCCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHc----------
Confidence            34556666655655554  67889999999999999999998864 578999999998888888887762          


Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC---CCC
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD---AAP  202 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~  202 (299)
                                                                             +...++.++.+|+....+.   .++
T Consensus       102 -------------------------------------------------------~~~~~v~~~~~d~~~~~~~~~~~~~  126 (233)
T 2gpy_A          102 -------------------------------------------------------GLESRIELLFGDALQLGEKLELYPL  126 (233)
T ss_dssp             -------------------------------------------------------TCTTTEEEECSCGGGSHHHHTTSCC
T ss_pred             -------------------------------------------------------CCCCcEEEEECCHHHHHHhcccCCC
Confidence                                                                   2335799999998763221   367


Q ss_pred             eeEEEecchhh---hHHHHHHHhccCCcEEEEEe
Q psy7837         203 YDVIYISQAIR---DIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       203 fD~v~~~~~~~---~~~~~~~~~L~~gG~lv~~~  233 (299)
                      ||+|+++.+..   .+.+.+.++|+|||++++..
T Consensus       127 fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  160 (233)
T 2gpy_A          127 FDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSDN  160 (233)
T ss_dssp             EEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEET
T ss_pred             ccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence            99999998874   45578999999999999974

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.42  E-value=1.8e-12  Score=109.16  Aligned_cols=98  Identities=23%  Similarity=0.227  Sum_probs=81.6

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc-C-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC----CCCCCC
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM-G-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR----GYPDAA  201 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~-~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~----~~~~~~  201 (299)
                      .+.++.+|||+|||+|.++..+++. + .+|+++|+++.+++.++++++.     .  .++.++.+|+..    .... +
T Consensus        71 ~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~-----~--~~v~~~~~d~~~~~~~~~~~-~  142 (230)
T 1fbn_A           71 PIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE-----R--ENIIPILGDANKPQEYANIV-E  142 (230)
T ss_dssp             CCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT-----C--TTEEEEECCTTCGGGGTTTS-C
T ss_pred             CCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc-----C--CCeEEEECCCCCcccccccC-c
Confidence            4567899999999999999999987 4 7899999999999999998765     2  689999999876    3333 6


Q ss_pred             CeeEEEecchh----hhHHHHHHHhccCCcEEEEEe
Q psy7837         202 PYDVIYISQAI----RDIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       202 ~fD~v~~~~~~----~~~~~~~~~~L~~gG~lv~~~  233 (299)
                      +||+|+.+..-    ..+.+++.++|+|||++++..
T Consensus       143 ~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  178 (230)
T 1fbn_A          143 KVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             CEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cEEEEEEecCChhHHHHHHHHHHHhCCCCcEEEEEE
Confidence            89999976433    345789999999999999974

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.42  E-value=1.2e-13  Score=117.44  Aligned_cols=114  Identities=16%  Similarity=0.158  Sum_probs=90.0

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCe
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSK  134 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  134 (299)
                      ..++..+.. ..++.+|||+|||+|+.+..+++.+++.++++++|+++.+++.+++++...                   
T Consensus        49 ~~~l~~l~~-~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-------------------  108 (242)
T 3r3h_A           49 AQFMQMLIR-LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREA-------------------  108 (242)
T ss_dssp             HHHHHHHHH-HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHT-------------------
T ss_pred             HHHHHHHHh-hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-------------------
Confidence            455555543 567789999999999999999998877789999999998888888887762                   


Q ss_pred             EEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC------CCCeeEEEe
Q psy7837         135 VLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD------AAPYDVIYI  208 (299)
Q Consensus       135 vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~------~~~fD~v~~  208 (299)
                                                                    +...+++++.+|+......      .++||+|++
T Consensus       109 ----------------------------------------------g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~  142 (242)
T 3r3h_A          109 ----------------------------------------------KQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFI  142 (242)
T ss_dssp             ----------------------------------------------TCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEEE
T ss_pred             ----------------------------------------------CCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEEE
Confidence                                                          3446899999998653221      368999999


Q ss_pred             cchhhh---HHHHHHHhccCCcEEEEEec
Q psy7837         209 SQAIRD---IPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       209 ~~~~~~---~~~~~~~~L~~gG~lv~~~~  234 (299)
                      +.....   ..+++.++|+|||+|++...
T Consensus       143 d~~~~~~~~~l~~~~~~LkpGG~lv~d~~  171 (242)
T 3r3h_A          143 DADKTNYLNYYELALKLVTPKGLIAIDNI  171 (242)
T ss_dssp             ESCGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             cCChHHhHHHHHHHHHhcCCCeEEEEECC
Confidence            887654   45688999999999999643

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.41  E-value=1e-12  Score=111.02  Aligned_cols=107  Identities=13%  Similarity=0.097  Sum_probs=82.6

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCC-cccCCCCeEEEEcCCCCCC---CCCCCe
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAP-AIALAENFEFVCADGRRGY---PDAAPY  203 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~v~~~~~d~~~~~---~~~~~f  203 (299)
                      .++.+|||||||+|.++..+++.  +..|+|+|+++.+++.|+++++.... ......|+.++.+|+...+   ...++|
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence            34678999999999999999987  56899999999999999987653000 0023568999999988632   345789


Q ss_pred             eEEEecchhh--------------hHHHHHHHhccCCcEEEEEecCC
Q psy7837         204 DVIYISQAIR--------------DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       204 D~v~~~~~~~--------------~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      |.|++..+..              .+.+++.++|+|||.|++.+...
T Consensus       125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~  171 (235)
T 3ckk_A          125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVL  171 (235)
T ss_dssp             EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred             eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCH
Confidence            9998875432              36678999999999999987653

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.41  E-value=1.4e-12  Score=110.28  Aligned_cols=100  Identities=22%  Similarity=0.262  Sum_probs=83.2

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      +.++.+|||+|||+|.++..+++. .+++++|+++.+++.+++++...      ..+++++.+|+...... ++||+|++
T Consensus        31 ~~~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~d~~~~~~~-~~fD~v~~  102 (243)
T 3d2l_A           31 VEPGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMET------NRHVDFWVQDMRELELP-EPVDAITI  102 (243)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHT------TCCCEEEECCGGGCCCS-SCEEEEEE
T ss_pred             cCCCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhc------CCceEEEEcChhhcCCC-CCcCEEEE
Confidence            345789999999999999999988 89999999999999999998762      25799999998875444 78999998


Q ss_pred             cc-hhhhH---------HHHHHHhccCCcEEEEEecCC
Q psy7837         209 SQ-AIRDI---------PWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       209 ~~-~~~~~---------~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      .. +++++         .+++.++|+|||.+++.+++.
T Consensus       103 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  140 (243)
T 3d2l_A          103 LCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSP  140 (243)
T ss_dssp             CTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             eCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCH
Confidence            75 55433         357889999999999977543

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.41  E-value=1.6e-12  Score=111.45  Aligned_cols=95  Identities=18%  Similarity=0.170  Sum_probs=79.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQ  210 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~  210 (299)
                      ++.+|||+|||+|.++..+++.+.+++++|+|+.+++.++++..         .+  ++.+|+.......++||+|++..
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~---------~~--~~~~d~~~~~~~~~~fD~v~~~~  122 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV---------KN--VVEAKAEDLPFPSGAFEAVLALG  122 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC---------SC--EEECCTTSCCSCTTCEEEEEECS
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcC---------CC--EEECcHHHCCCCCCCEEEEEEcc
Confidence            78899999999999999999999999999999999999988732         12  78899887555567899999987


Q ss_pred             hhhh-------HHHHHHHhccCCcEEEEEecCC
Q psy7837         211 AIRD-------IPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       211 ~~~~-------~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ++.+       +.+++.++|+|||.+++..++.
T Consensus       123 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  155 (260)
T 2avn_A          123 DVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF  155 (260)
T ss_dssp             SHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             hhhhccccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence            5543       3368899999999999987653

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.41  E-value=1.1e-12  Score=108.60  Aligned_cols=94  Identities=16%  Similarity=0.204  Sum_probs=80.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS  209 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  209 (299)
                      ++.+|||+|||+|.++..+   +. +++++|+++.+++.++++.          .++.++.+|+.......++||+|++.
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~----------~~~~~~~~d~~~~~~~~~~fD~v~~~  102 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA----------PEATWVRAWGEALPFPGESFDVVLLF  102 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC----------TTSEEECCCTTSCCSCSSCEEEEEEE
T ss_pred             CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC----------CCcEEEEcccccCCCCCCcEEEEEEc
Confidence            7889999999999999887   77 8999999999999998873          47889999988765555789999999


Q ss_pred             chhhh------HHHHHHHhccCCcEEEEEecCCC
Q psy7837         210 QAIRD------IPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       210 ~~~~~------~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      .++++      +.+++.++|||||.+++..++..
T Consensus       103 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~  136 (211)
T 2gs9_A          103 TTLEFVEDVERVLLEARRVLRPGGALVVGVLEAL  136 (211)
T ss_dssp             SCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             ChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence            88765      34689999999999999987664

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.41  E-value=2.3e-12  Score=103.77  Aligned_cols=102  Identities=18%  Similarity=0.190  Sum_probs=83.7

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      ...++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++++.     ....+++++.+|+.... +.++||+|+
T Consensus        32 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~-----~~~~~~~~~~~d~~~~~-~~~~~D~i~  105 (183)
T 2yxd_A           32 NLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAK-----FNIKNCQIIKGRAEDVL-DKLEFNKAF  105 (183)
T ss_dssp             CCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHH-----TTCCSEEEEESCHHHHG-GGCCCSEEE
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHH-----cCCCcEEEEECCccccc-cCCCCcEEE
Confidence            456788999999999999999999888999999999999999999987     34468999999987633 336899999


Q ss_pred             ecch--hhhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         208 ISQA--IRDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       208 ~~~~--~~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      ++.+  ...+.+++.++  |||.+++......
T Consensus       106 ~~~~~~~~~~l~~~~~~--~gG~l~~~~~~~~  135 (183)
T 2yxd_A          106 IGGTKNIEKIIEILDKK--KINHIVANTIVLE  135 (183)
T ss_dssp             ECSCSCHHHHHHHHHHT--TCCEEEEEESCHH
T ss_pred             ECCcccHHHHHHHHhhC--CCCEEEEEecccc
Confidence            9977  22344566666  9999999986543

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.41  E-value=2e-12  Score=111.86  Aligned_cols=101  Identities=18%  Similarity=0.288  Sum_probs=83.6

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      .++.+|||+|||+|.++..++..  +.+|+++|+|+.+++.++++++.     ....+++++++|+..... .++||+|+
T Consensus       108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~-----~~~~~v~~~~~d~~~~~~-~~~fD~Iv  181 (276)
T 2b3t_A          108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQH-----LAIKNIHILQSDWFSALA-GQQFAMIV  181 (276)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHH-----HTCCSEEEECCSTTGGGT-TCCEEEEE
T ss_pred             cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-----cCCCceEEEEcchhhhcc-cCCccEEE
Confidence            45789999999999999999865  67899999999999999999987     344589999999886443 36799999


Q ss_pred             ecchh-------------------------------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         208 ISQAI-------------------------------RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       208 ~~~~~-------------------------------~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +++++                               ..+.+.+.++|+|||.+++..+..
T Consensus       182 ~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~  241 (276)
T 2b3t_A          182 SNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ  241 (276)
T ss_dssp             ECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS
T ss_pred             ECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECch
Confidence            98543                               234467889999999999987544

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.41  E-value=4e-13  Score=115.48  Aligned_cols=108  Identities=19%  Similarity=0.183  Sum_probs=81.3

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCccc------------------------C
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIA------------------------L  182 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~------------------------~  182 (299)
                      ...++.+|||||||+|.++..++..+. +|+++|+|+.+++.++++++.......                        .
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            456788999999999999888888886 599999999999999988754210000                        0


Q ss_pred             CCCeE-EEEcCCCCCCC----CCCCeeEEEecchhhhH----------HHHHHHhccCCcEEEEEecC
Q psy7837         183 AENFE-FVCADGRRGYP----DAAPYDVIYISQAIRDI----------PWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       183 ~~~v~-~~~~d~~~~~~----~~~~fD~v~~~~~~~~~----------~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ..++. ++++|+....+    ..++||+|++..+++++          .+++.++|||||.|++....
T Consensus       132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~  199 (263)
T 2a14_A          132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL  199 (263)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence            11243 88999886321    24689999999888764          25788999999999998643

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.41  E-value=1e-12  Score=112.48  Aligned_cols=100  Identities=24%  Similarity=0.307  Sum_probs=83.7

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      +.++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++++.+     ... +++..+|..... +.++||+|++
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~-----~~~-v~~~~~d~~~~~-~~~~fD~Vv~  190 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRN-----GVR-PRFLEGSLEAAL-PFGPFDLLVA  190 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHT-----TCC-CEEEESCHHHHG-GGCCEEEEEE
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHc-----CCc-EEEEECChhhcC-cCCCCCEEEE
Confidence            356899999999999999999999999999999999999999999873     333 899999877533 2367999999


Q ss_pred             cchhh---hHHHHHHHhccCCcEEEEEecC
Q psy7837         209 SQAIR---DIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       209 ~~~~~---~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      +...+   .+.+.+.++|+|||+++++...
T Consensus       191 n~~~~~~~~~l~~~~~~LkpgG~lils~~~  220 (254)
T 2nxc_A          191 NLYAELHAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             ECCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCcHHHHHHHHHHHHHHcCCCCEEEEEeec
Confidence            87554   3557889999999999997543

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.41  E-value=9e-13  Score=106.12  Aligned_cols=107  Identities=11%  Similarity=0.084  Sum_probs=82.6

Q ss_pred             HHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCC-CeEEEEcC
Q psy7837         116 AETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAE-NFEFVCAD  192 (299)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~-~v~~~~~d  192 (299)
                      .+.++..+...  +.+..+|||+|||+|.+++.++..  +.+|+++|+|+.+++.++++++.+     +.. ++++  .|
T Consensus        36 ld~fY~~~~~~--l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~-----g~~~~v~~--~d  106 (200)
T 3fzg_A           36 LNDFYTYVFGN--IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKL-----KTTIKYRF--LN  106 (200)
T ss_dssp             HHHHHHHHHHH--SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHS-----CCSSEEEE--EC
T ss_pred             HHHHHHHHHhh--cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc-----CCCccEEE--ec
Confidence            44444443322  266889999999999999999877  679999999999999999999883     333 5655  66


Q ss_pred             CCCCCCCCCCeeEEEecchhhhHHH------HHHHhccCCcEEEEE
Q psy7837         193 GRRGYPDAAPYDVIYISQAIRDIPW------HIVDQLKLGGRMLFI  232 (299)
Q Consensus       193 ~~~~~~~~~~fD~v~~~~~~~~~~~------~~~~~L~~gG~lv~~  232 (299)
                      ..... ..++||+|++...++.+.+      ++.+.|+|||.++-.
T Consensus       107 ~~~~~-~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISf  151 (200)
T 3fzg_A          107 KESDV-YKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISF  151 (200)
T ss_dssp             CHHHH-TTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEE
T ss_pred             ccccC-CCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEe
Confidence            65443 3377999999999998853      789999999876654

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.40  E-value=2e-12  Score=114.72  Aligned_cols=104  Identities=19%  Similarity=0.205  Sum_probs=82.9

Q ss_pred             HHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCC
Q psy7837         122 RINFYGHLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDA  200 (299)
Q Consensus       122 ~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  200 (299)
                      .+.......++.+|||+|||+|.++..+++.+. +|+++|.+ .+++.++++++.+    +...+++++.+|+.....+.
T Consensus        29 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~----~~~~~i~~~~~d~~~~~~~~  103 (328)
T 1g6q_1           29 AIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELN----GFSDKITLLRGKLEDVHLPF  103 (328)
T ss_dssp             HHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHT----TCTTTEEEEESCTTTSCCSS
T ss_pred             HHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHc----CCCCCEEEEECchhhccCCC
Confidence            333334456789999999999999999999876 79999999 5999999998874    34567999999998755444


Q ss_pred             CCeeEEEecchh---------hhHHHHHHHhccCCcEEE
Q psy7837         201 APYDVIYISQAI---------RDIPWHIVDQLKLGGRML  230 (299)
Q Consensus       201 ~~fD~v~~~~~~---------~~~~~~~~~~L~~gG~lv  230 (299)
                      ++||+|++....         ..+..++.++|+|||.++
T Consensus       104 ~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          104 PKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             SCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             CcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence            789999987431         234567789999999997

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.40  E-value=1.4e-12  Score=114.36  Aligned_cols=102  Identities=18%  Similarity=0.168  Sum_probs=78.0

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCC------CeEEEEcCCCCC------
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAE------NFEFVCADGRRG------  196 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~------~v~~~~~d~~~~------  196 (299)
                      .++.+|||+|||+|..+..++.. +.+|+|+|+|+.+++.|+++....     ...      ++++.+.|+...      
T Consensus        47 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~-----~~~~~~~~~~~~f~~~d~~~d~~~~~l  121 (302)
T 2vdw_A           47 SNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKL-----NSGIKTKYYKFDYIQETIRSDTFVSSV  121 (302)
T ss_dssp             CSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHH-----CC----CCCEEEEEECCTTSSSHHHHH
T ss_pred             CCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhc-----cccccccccccchhhhhcccchhhhhh
Confidence            35789999999999877666655 578999999999999999987652     211      367888887311      


Q ss_pred             --CCCCCCeeEEEecchhh---------hHHHHHHHhccCCcEEEEEecCC
Q psy7837         197 --YPDAAPYDVIYISQAIR---------DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       197 --~~~~~~fD~v~~~~~~~---------~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                        ....++||+|++..+++         .+.+++.++|||||++++.+++.
T Consensus       122 ~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~  172 (302)
T 2vdw_A          122 REVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDG  172 (302)
T ss_dssp             HTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             hccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence              12346899999887664         24568999999999999988764

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.40  E-value=2.6e-12  Score=117.19  Aligned_cols=128  Identities=17%  Similarity=0.191  Sum_probs=93.6

Q ss_pred             cccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHH
Q psy7837          42 IGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIK  121 (299)
Q Consensus        42 ~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~  121 (299)
                      ..+|+..  |.....+++.+.  +++|++|||+|||+|+++..+++..+. .+++|+|+++.+++.|...+..       
T Consensus       221 ~~yGet~--p~~v~~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g~-~~V~GVDis~~~l~~A~~Ml~~-------  288 (433)
T 1u2z_A          221 YVYGELL--PNFLSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGC-ALSFGCEIMDDASDLTILQYEE-------  288 (433)
T ss_dssp             GCCCCBC--HHHHHHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCC-SEEEEEECCHHHHHHHHHHHHH-------
T ss_pred             ccccccc--HHHHHHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHhHHH-------
Confidence            3445443  777888888776  889999999999999999999998753 5799999999999888444332       


Q ss_pred             HHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccC--CCCeEEEEcCCCCC-CC
Q psy7837         122 RINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIAL--AENFEFVCADGRRG-YP  198 (299)
Q Consensus       122 ~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~--~~~v~~~~~d~~~~-~~  198 (299)
                                                                     ++++++.     .+  ..+++++++|.... ..
T Consensus       289 -----------------------------------------------ar~~~~~-----~Gl~~~nV~~i~gD~~~~~~~  316 (433)
T 1u2z_A          289 -----------------------------------------------LKKRCKL-----YGMRLNNVEFSLKKSFVDNNR  316 (433)
T ss_dssp             -----------------------------------------------HHHHHHH-----TTBCCCCEEEEESSCSTTCHH
T ss_pred             -----------------------------------------------HHHHHHH-----cCCCCCceEEEEcCccccccc
Confidence                                                           3334333     23  46899999865532 11


Q ss_pred             ---CCCCeeEEEecchh-----hhHHHHHHHhccCCcEEEEEe
Q psy7837         199 ---DAAPYDVIYISQAI-----RDIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       199 ---~~~~fD~v~~~~~~-----~~~~~~~~~~L~~gG~lv~~~  233 (299)
                         ..++||+|+++..+     .....++.++|||||++++..
T Consensus       317 ~~~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d  359 (433)
T 1u2z_A          317 VAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK  359 (433)
T ss_dssp             HHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             cccccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEee
Confidence               13679999997544     223368999999999999974

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.40  E-value=1.1e-12  Score=113.43  Aligned_cols=106  Identities=17%  Similarity=0.189  Sum_probs=85.4

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY  144 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~  144 (299)
                      +++|++|||+|||+|..+..+++.+...++++++|+++.+++.+++++..                              
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~------------------------------  130 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINR------------------------------  130 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHH------------------------------
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHH------------------------------
Confidence            78999999999999999999999876567899999988888888888776                              


Q ss_pred             HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC----CCCCeeEEEecchh--------
Q psy7837         145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP----DAAPYDVIYISQAI--------  212 (299)
Q Consensus       145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fD~v~~~~~~--------  212 (299)
                                                          .+..+++++.+|+.....    ..++||+|+++.+.        
T Consensus       131 ------------------------------------~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~  174 (274)
T 3ajd_A          131 ------------------------------------MGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDK  174 (274)
T ss_dssp             ------------------------------------TTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEECCC-------
T ss_pred             ------------------------------------hCCCcEEEEeCChHhcchhhhhccccCCEEEEcCCCCCCccccc
Confidence                                                345589999999875322    13679999998543        


Q ss_pred             ----------------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         213 ----------------RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       213 ----------------~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                                      ..+.+++.++|||||++++++...
T Consensus       175 ~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          175 NRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             -----HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence                            235567889999999999987554

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.40  E-value=9.1e-13  Score=116.96  Aligned_cols=102  Identities=20%  Similarity=0.135  Sum_probs=83.2

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCC--CeEEEEcCCCCCCCC----CCCe
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAE--NFEFVCADGRRGYPD----AAPY  203 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~----~~~f  203 (299)
                      .++.+|||+|||+|.+++.+++.+++|+++|+|+.+++.+++|++.+     ...  +++++++|+......    .++|
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~-----gl~~~~v~~i~~D~~~~l~~~~~~~~~f  226 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLA-----GLEQAPIRWICEDAMKFIQREERRGSTY  226 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHH-----TCTTSCEEEECSCHHHHHHHHHHHTCCB
T ss_pred             CCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHc-----CCCccceEEEECcHHHHHHHHHhcCCCc
Confidence            35789999999999999999999999999999999999999999874     333  499999998753321    3579


Q ss_pred             eEEEecchh----------------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         204 DVIYISQAI----------------RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       204 D~v~~~~~~----------------~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      |+|+++++.                ..+.+.+.++|+|||.+++.....
T Consensus       227 D~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~  275 (332)
T 2igt_A          227 DIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS  275 (332)
T ss_dssp             SEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             eEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence            999998762                234567889999999988776544

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.40  E-value=7.8e-13  Score=112.66  Aligned_cols=114  Identities=18%  Similarity=0.278  Sum_probs=89.3

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCC
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGS  133 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~  133 (299)
                      ...++..+.. ..++.+|||+|||+|+.+..+++.+++.++++++|+++.+++.+++++...                  
T Consensus        67 ~~~ll~~l~~-~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~------------------  127 (247)
T 1sui_A           67 EGQFLSMLLK-LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA------------------  127 (247)
T ss_dssp             HHHHHHHHHH-HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT------------------
T ss_pred             HHHHHHHHHH-hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc------------------
Confidence            3555555543 567789999999999999999998876789999999999999988888762                  


Q ss_pred             eEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-------CCCCeeEE
Q psy7837         134 KVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-------DAAPYDVI  206 (299)
Q Consensus       134 ~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~~fD~v  206 (299)
                                                                     +...+++++.+|+....+       ..++||+|
T Consensus       128 -----------------------------------------------g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V  160 (247)
T 1sui_A          128 -----------------------------------------------GVDHKIDFREGPALPVLDEMIKDEKNHGSYDFI  160 (247)
T ss_dssp             -----------------------------------------------TCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEE
T ss_pred             -----------------------------------------------CCCCCeEEEECCHHHHHHHHHhccCCCCCEEEE
Confidence                                                           233579999999864321       13679999


Q ss_pred             Eecchhh---hHHHHHHHhccCCcEEEEEe
Q psy7837         207 YISQAIR---DIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       207 ~~~~~~~---~~~~~~~~~L~~gG~lv~~~  233 (299)
                      +++....   ...+.+.++|+|||.+++..
T Consensus       161 ~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          161 FVDADKDNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             EECSCSTTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             EEcCchHHHHHHHHHHHHhCCCCeEEEEec
Confidence            9987643   45578999999999999864

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.40  E-value=1.6e-12  Score=117.73  Aligned_cols=106  Identities=21%  Similarity=0.198  Sum_probs=85.7

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHHHhcCCcc---cCCCCeEEEEcCCCCC------
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAI---ALAENFEFVCADGRRG------  196 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~---~~~~~v~~~~~d~~~~------  196 (299)
                      ..++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.++++++......   ....+++++++|+...      
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            567899999999999999999875   5689999999999999999876520000   1126899999999864      


Q ss_pred             CCCCCCeeEEEecchhhh------HHHHHHHhccCCcEEEEEec
Q psy7837         197 YPDAAPYDVIYISQAIRD------IPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       197 ~~~~~~fD~v~~~~~~~~------~~~~~~~~L~~gG~lv~~~~  234 (299)
                      ..+.++||+|+++.++++      +.+++.++|||||++++...
T Consensus       161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~  204 (383)
T 4fsd_A          161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDV  204 (383)
T ss_dssp             CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEe
Confidence            445578999999998865      44789999999999999754

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.39  E-value=4.3e-12  Score=103.17  Aligned_cols=99  Identities=20%  Similarity=0.252  Sum_probs=82.8

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      +.++.+|||+|||+|.++..+++.+.+++++|+++.+++.+++++          .++.++.+|+.......++||+|++
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~----------~~~~~~~~d~~~~~~~~~~~D~i~~  113 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDF----------PEARWVVGDLSVDQISETDFDLIVS  113 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----------TTSEEEECCTTTSCCCCCCEEEEEE
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhC----------CCCcEEEcccccCCCCCCceeEEEE
Confidence            357889999999999999999999999999999999999998863          3588999998875444578999999


Q ss_pred             c-chhh--------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837         209 S-QAIR--------DIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       209 ~-~~~~--------~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      + ..++        .+.+++.++|+|||.+++..+...
T Consensus       114 ~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~  151 (195)
T 3cgg_A          114 AGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGR  151 (195)
T ss_dssp             CCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred             CCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence            8 4443        344688999999999999887653

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.39  E-value=1.1e-12  Score=111.87  Aligned_cols=102  Identities=18%  Similarity=0.119  Sum_probs=78.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc----CCeEEEEeCChHHHHHHHHHHHhcCCcccCCC-C--------------------
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM----GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAE-N--------------------  185 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~----~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~-~--------------------  185 (299)
                      ++.+|||+|||+|.++..+++.    +.+|+++|+|+.+++.|++++..+...  ... +                    
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  128 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPA--GLTARELERREQSERFGKPSYLEAA  128 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHH--HHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhc--cccccchhhhhhhhhcccccchhhh
Confidence            5679999999999999999876    568999999999999999987652000  111 1                    


Q ss_pred             -----eE-------------EEEcCCCCCCC-----CCCCeeEEEecchhh---------------hHHHHHHHhccCCc
Q psy7837         186 -----FE-------------FVCADGRRGYP-----DAAPYDVIYISQAIR---------------DIPWHIVDQLKLGG  227 (299)
Q Consensus       186 -----v~-------------~~~~d~~~~~~-----~~~~fD~v~~~~~~~---------------~~~~~~~~~L~~gG  227 (299)
                           ++             ++++|+.....     ...+||+|+++.++.               .+.+++.++|+|||
T Consensus       129 ~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG  208 (250)
T 1o9g_A          129 QAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHA  208 (250)
T ss_dssp             HHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTC
T ss_pred             hhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCc
Confidence                 56             99999876442     334799999987542               45578899999999


Q ss_pred             EEEEEec
Q psy7837         228 RMLFIKG  234 (299)
Q Consensus       228 ~lv~~~~  234 (299)
                      ++++...
T Consensus       209 ~l~~~~~  215 (250)
T 1o9g_A          209 VIAVTDR  215 (250)
T ss_dssp             EEEEEES
T ss_pred             EEEEeCc
Confidence            9999443

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.39  E-value=5.8e-14  Score=118.95  Aligned_cols=98  Identities=22%  Similarity=0.182  Sum_probs=83.3

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCC-CCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALA-ENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      .++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++++.+     .. .+++++++|+.... ..++||+|++
T Consensus        77 ~~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~~~d~~~~~-~~~~~D~v~~  150 (241)
T 3gdh_A           77 FKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVY-----GIADKIEFICGDFLLLA-SFLKADVVFL  150 (241)
T ss_dssp             SCCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-----TCGGGEEEEESCHHHHG-GGCCCSEEEE
T ss_pred             cCCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHc-----CCCcCeEEEECChHHhc-ccCCCCEEEE
Confidence            47899999999999999999999999999999999999999999873     33 58999999988644 3468999999


Q ss_pred             cchhhhHH------HHHHHhccCCcEEEEEe
Q psy7837         209 SQAIRDIP------WHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       209 ~~~~~~~~------~~~~~~L~~gG~lv~~~  233 (299)
                      +.++++..      .++.++|+|||.+++..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          151 SPPWGGPDYATAETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             CCCCSSGGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred             CCCcCCcchhhhHHHHHHhhcCCcceeHHHH
Confidence            99876544      25788999999877654

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.39  E-value=8e-13  Score=112.08  Aligned_cols=101  Identities=17%  Similarity=0.165  Sum_probs=82.7

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC-----CCC
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD-----AAP  202 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~  202 (299)
                      .+.++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.+++++.        ..+++++++|+......     ..+
T Consensus        53 ~~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~--------~~~~~~~~~d~~~~~~~~~~~~~~~  124 (245)
T 3ggd_A           53 LFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENT--------AANISYRLLDGLVPEQAAQIHSEIG  124 (245)
T ss_dssp             TSCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSC--------CTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred             ccCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCc--------ccCceEEECcccccccccccccccC
Confidence            45778999999999999999999998899999999999999999852        34899999998763221     134


Q ss_pred             eeEEEecchhhh--------HHHHHHHhccCCcEEEEEecCC
Q psy7837         203 YDVIYISQAIRD--------IPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       203 fD~v~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ||+|++..++++        +.+++.++|||||++++.....
T Consensus       125 ~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  166 (245)
T 3ggd_A          125 DANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGT  166 (245)
T ss_dssp             SCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred             ccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            899999887654        3458999999999988876543

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.39  E-value=8.6e-14  Score=115.26  Aligned_cols=100  Identities=25%  Similarity=0.340  Sum_probs=64.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC----CCCe
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD----AAPY  203 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~----~~~f  203 (299)
                      .++.+|||+|||+|.++..+++.  +.+++++|+++.+++.+++++..+     .. +++++++|+......    .++|
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----~~-~~~~~~~d~~~~~~~~~~~~~~f  102 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERF-----GA-VVDWAAADGIEWLIERAERGRPW  102 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------------CCHHHHHHHHHHHHHTTCCB
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHh-----CC-ceEEEEcchHhhhhhhhhccCcc
Confidence            67889999999999999999988  568999999999999999998762     33 788899988763221    2789


Q ss_pred             eEEEecchh--------------------------------hhHHHHHHHhccCCcE-EEEEecC
Q psy7837         204 DVIYISQAI--------------------------------RDIPWHIVDQLKLGGR-MLFIKGH  235 (299)
Q Consensus       204 D~v~~~~~~--------------------------------~~~~~~~~~~L~~gG~-lv~~~~~  235 (299)
                      |+|+++.++                                ..+.+++.++|+|||+ +++..+.
T Consensus       103 D~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  167 (215)
T 4dzr_A          103 HAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH  167 (215)
T ss_dssp             SEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT
T ss_pred             cEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence            999997654                                2333467789999999 6665553

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.38  E-value=2.4e-12  Score=115.62  Aligned_cols=123  Identities=15%  Similarity=0.110  Sum_probs=90.7

Q ss_pred             cchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccC
Q psy7837          51 PSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLV  130 (299)
Q Consensus        51 p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~  130 (299)
                      +.....+++.+.  +++|++|||+|||+|.++..++...+. .+++|+|+++.+++.|+++...                
T Consensus       159 ~~~i~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~-~kVvGIDiS~~~lelAr~n~e~----------------  219 (438)
T 3uwp_A          159 FDLVAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNC-KHHYGVEKADIPAKYAETMDRE----------------  219 (438)
T ss_dssp             HHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCCC-SEEEEEECCHHHHHHHHHHHHH----------------
T ss_pred             HHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHH----------------
Confidence            445567777765  899999999999999999999987643 4799999999999998887654                


Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccC-CCCeEEEEcCCCCCCCCC--CCeeEEE
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIAL-AENFEFVCADGRRGYPDA--APYDVIY  207 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~--~~fD~v~  207 (299)
                                                            ++++++.+    +. ..+++|+++|+.......  ..||+|+
T Consensus       220 --------------------------------------frkr~~~~----Gl~~~rVefi~GD~~~lp~~d~~~~aDVVf  257 (438)
T 3uwp_A          220 --------------------------------------FRKWMKWY----GKKHAEYTLERGDFLSEEWRERIANTSVIF  257 (438)
T ss_dssp             --------------------------------------HHHHHHHH----TBCCCEEEEEECCTTSHHHHHHHHTCSEEE
T ss_pred             --------------------------------------HHHHHHHh----CCCCCCeEEEECcccCCccccccCCccEEE
Confidence                                                  11112211    12 368999999998643321  3699999


Q ss_pred             ecchhh-----hHHHHHHHhccCCcEEEEEec
Q psy7837         208 ISQAIR-----DIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       208 ~~~~~~-----~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      +++.+.     ....++.+.|||||+|++...
T Consensus       258 ~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~  289 (438)
T 3uwp_A          258 VNNFAFGPEVDHQLKERFANMKEGGRIVSSKP  289 (438)
T ss_dssp             ECCTTCCHHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred             EcccccCchHHHHHHHHHHcCCCCcEEEEeec
Confidence            987642     233578899999999998743

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.38  E-value=7e-13  Score=106.01  Aligned_cols=96  Identities=17%  Similarity=0.236  Sum_probs=81.1

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      ...++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++          ..++++..+|  . ....++||+|+
T Consensus        14 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----------~~~v~~~~~d--~-~~~~~~~D~v~   80 (170)
T 3i9f_A           14 FEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK----------FDSVITLSDP--K-EIPDNSVDFIL   80 (170)
T ss_dssp             HSSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH----------CTTSEEESSG--G-GSCTTCEEEEE
T ss_pred             CcCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh----------CCCcEEEeCC--C-CCCCCceEEEE
Confidence            356788999999999999999999877999999999999999887          2478899998  2 23347899999


Q ss_pred             ecchhhhH------HHHHHHhccCCcEEEEEecCC
Q psy7837         208 ISQAIRDI------PWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       208 ~~~~~~~~------~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +..+++++      .+++.++|+|||++++.....
T Consensus        81 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  115 (170)
T 3i9f_A           81 FANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRK  115 (170)
T ss_dssp             EESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             EccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCc
Confidence            99988654      578999999999999986544

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.38  E-value=2.2e-12  Score=111.17  Aligned_cols=100  Identities=23%  Similarity=0.172  Sum_probs=85.6

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcC-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMG-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      ..+|.+|||+|||+|.+++.+++.| .+|+++|+|+.+++.+++|++.|    ....+++++++|+..... .+.||.|+
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N----~v~~~v~~~~~D~~~~~~-~~~~D~Vi  197 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLN----KVEDRMSAYNMDNRDFPG-ENIADRIL  197 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHT----TCTTTEEEECSCTTTCCC-CSCEEEEE
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHc----CCCCcEEEEeCcHHHhcc-ccCCCEEE
Confidence            5789999999999999999999987 57999999999999999999986    456779999999987544 47899999


Q ss_pred             ecchh--hhHHHHHHHhccCCcEEEEEe
Q psy7837         208 ISQAI--RDIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       208 ~~~~~--~~~~~~~~~~L~~gG~lv~~~  233 (299)
                      ++.+.  ....+.+.++|++||+|.+..
T Consensus       198 ~~~p~~~~~~l~~a~~~lk~gG~ih~~~  225 (278)
T 3k6r_A          198 MGYVVRTHEFIPKALSIAKDGAIIHYHN  225 (278)
T ss_dssp             ECCCSSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             ECCCCcHHHHHHHHHHHcCCCCEEEEEe
Confidence            98764  345678889999999987653

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.38  E-value=1.2e-12  Score=119.94  Aligned_cols=125  Identities=20%  Similarity=0.209  Sum_probs=95.7

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      ..++.+|||+|||+|.+++.+++.+.+|+++|+++.+++.|++|++.+     ... ++++.+|+......  +||+|++
T Consensus       288 ~~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~n-----gl~-v~~~~~d~~~~~~~--~fD~Vv~  359 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEIN-----NVD-AEFEVASDREVSVK--GFDTVIV  359 (425)
T ss_dssp             HCCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-----TCC-EEEEECCTTTCCCT--TCSEEEE
T ss_pred             cCCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHc-----CCc-EEEEECChHHcCcc--CCCEEEE
Confidence            456889999999999999999999999999999999999999999873     444 99999999875443  7999999


Q ss_pred             cchhhh----HHHHHHHhccCCcEEEEEecCCCCcceeeeEEeecCCceEEEEecceeccccccc
Q psy7837         209 SQAIRD----IPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKS  269 (299)
Q Consensus       209 ~~~~~~----~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (299)
                      +++...    +.+.+ +.|+|+|++++++.+......+..+.      +....+.++.++ |.+.
T Consensus       360 dPPr~g~~~~~~~~l-~~l~p~givyvsc~p~tlarDl~~l~------y~l~~~~~~DmF-P~T~  416 (425)
T 2jjq_A          360 DPPRAGLHPRLVKRL-NREKPGVIVYVSCNPETFARDVKMLD------YRIDEIVALDMF-PHTP  416 (425)
T ss_dssp             CCCTTCSCHHHHHHH-HHHCCSEEEEEESCHHHHHHHHHHSS------CCEEEEEEECCS-TTSS
T ss_pred             cCCccchHHHHHHHH-HhcCCCcEEEEECChHHHHhHHhhCe------EEEEEEEEECcC-CCCc
Confidence            988532    33444 45899999999986644332222221      555666677777 6554

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.38  E-value=1.5e-12  Score=108.53  Aligned_cols=98  Identities=22%  Similarity=0.234  Sum_probs=81.1

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC----CCCCCCee
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG----YPDAAPYD  204 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD  204 (299)
                      ..++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++           .++.+..+|....    .....+||
T Consensus        50 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----------~~~~~~~~~~~~~~~~~~~~~~~fD  118 (227)
T 3e8s_A           50 GRQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA-----------GAGEVHLASYAQLAEAKVPVGKDYD  118 (227)
T ss_dssp             HTCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT-----------CSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred             cCCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh-----------cccccchhhHHhhcccccccCCCcc
Confidence            34679999999999999999999999999999999999999876           2566777776642    23335699


Q ss_pred             EEEecchhh-----hHHHHHHHhccCCcEEEEEecCCC
Q psy7837         205 VIYISQAIR-----DIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       205 ~v~~~~~~~-----~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      +|++..+++     .+.+++.++|+|||.+++...+..
T Consensus       119 ~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  156 (227)
T 3e8s_A          119 LICANFALLHQDIIELLSAMRTLLVPGGALVIQTLHPW  156 (227)
T ss_dssp             EEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             EEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEecCcc
Confidence            999988775     566799999999999999987654

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.38  E-value=3e-12  Score=123.21  Aligned_cols=106  Identities=11%  Similarity=0.041  Sum_probs=87.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcC---CeEEEEeCChHHHHHHHHHHHhcC-CcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMG---AKVYAIEHVKNLCKRAMKNIRRGA-PAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~---~~v~~~D~~~~~~~~a~~~~~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      .++.+|||+|||+|.++..+++.+   .+|+++|+++.+++.|++++.... .......+++++++|+.......++||+
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl  799 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI  799 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence            478999999999999999999997   789999999999999998765310 0002446899999999987666688999


Q ss_pred             EEecchhhhHH--------HHHHHhccCCcEEEEEecCC
Q psy7837         206 IYISQAIRDIP--------WHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       206 v~~~~~~~~~~--------~~~~~~L~~gG~lv~~~~~~  236 (299)
                      |++..+++++.        +++.++|||| .+++.+++.
T Consensus       800 VV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~  837 (950)
T 3htx_A          800 GTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY  837 (950)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred             EEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence            99999987644        4679999999 888887654

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.38  E-value=3.3e-12  Score=108.63  Aligned_cols=107  Identities=13%  Similarity=0.058  Sum_probs=83.4

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcc-c--CCCCeEEEEcCCCCCC---CCCC
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAI-A--LAENFEFVCADGRRGY---PDAA  201 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~-~--~~~~v~~~~~d~~~~~---~~~~  201 (299)
                      .++.+|||+|||+|.++..+++.+  ..|+++|+|+.+++.++++++.+.... .  ...++.++.+|+....   ...+
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~  127 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG  127 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence            457899999999999999999885  579999999999999999887520000 0  3468999999987632   3457


Q ss_pred             CeeEEEecchhh--------------hHHHHHHHhccCCcEEEEEecCC
Q psy7837         202 PYDVIYISQAIR--------------DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       202 ~fD~v~~~~~~~--------------~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      .+|.|++..+-.              .+..++.++|+|||.|++.+...
T Consensus       128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~  176 (246)
T 2vdv_E          128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVK  176 (246)
T ss_dssp             CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred             ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccH
Confidence            899998764432              57788999999999999976543

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.38  E-value=4.4e-12  Score=106.32  Aligned_cols=99  Identities=20%  Similarity=0.219  Sum_probs=81.8

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHc-C--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---CCCCC
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYM-G--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---PDAAP  202 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~-~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~  202 (299)
                      +.++.+|||+|||+|.++..+++. +  .+|+++|+++.+++.++++++.     .  .+++++.+|+....   ...++
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~-----~--~~v~~~~~d~~~~~~~~~~~~~  143 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-----R--RNIVPILGDATKPEEYRALVPK  143 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-----C--TTEEEEECCTTCGGGGTTTCCC
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc-----c--CCCEEEEccCCCcchhhcccCC
Confidence            567889999999999999999976 3  6899999999999999998865     2  68999999987621   12357


Q ss_pred             eeEEEecchhh----hHHHHHHHhccCCcEEEEEec
Q psy7837         203 YDVIYISQAIR----DIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       203 fD~v~~~~~~~----~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      ||+|+++.+..    .+..++.++|+|||.+++.+.
T Consensus       144 ~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  179 (227)
T 1g8a_A          144 VDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVK  179 (227)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            99999987654    236789999999999999854

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.37  E-value=4.8e-12  Score=106.61  Aligned_cols=103  Identities=27%  Similarity=0.286  Sum_probs=82.9

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY  144 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~  144 (299)
                      ++++.+|||+|||+|.++..+++..++.++++++|+++.+++.+.+....                              
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~------------------------------  124 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK------------------------------  124 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH------------------------------
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc------------------------------
Confidence            67899999999999999999999987778899999998887776665544                              


Q ss_pred             HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---CCCCCeeEEEecchhhh----HHH
Q psy7837         145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---PDAAPYDVIYISQAIRD----IPW  217 (299)
Q Consensus       145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~v~~~~~~~~----~~~  217 (299)
                                                          .  .+++++.+|+....   ...++||+|+++.+..+    +..
T Consensus       125 ------------------------------------~--~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~~~~~~~~~~~  166 (233)
T 2ipx_A          125 ------------------------------------R--TNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVAL  166 (233)
T ss_dssp             ------------------------------------C--TTEEEECSCTTCGGGGGGGCCCEEEEEECCCCTTHHHHHHH
T ss_pred             ------------------------------------c--CCeEEEEcccCChhhhcccCCcEEEEEEcCCCccHHHHHHH
Confidence                                                2  57899999987631   13468999999876432    356


Q ss_pred             HHHHhccCCcEEEEEecC
Q psy7837         218 HIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       218 ~~~~~L~~gG~lv~~~~~  235 (299)
                      ++.++|+|||++++.+..
T Consensus       167 ~~~~~LkpgG~l~i~~~~  184 (233)
T 2ipx_A          167 NAHTFLRNGGHFVISIKA  184 (233)
T ss_dssp             HHHHHEEEEEEEEEEEEH
T ss_pred             HHHHHcCCCeEEEEEEcc
Confidence            789999999999998754

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.36  E-value=2.5e-12  Score=108.82  Aligned_cols=115  Identities=17%  Similarity=0.265  Sum_probs=90.1

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCC
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGS  133 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~  133 (299)
                      ...++..+.. ..++.+|||+|||+|+.+..+++.+++.++++++|+++.+++.+++++...                  
T Consensus        58 ~~~~l~~l~~-~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------------------  118 (237)
T 3c3y_A           58 AGQLMSFVLK-LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKA------------------  118 (237)
T ss_dssp             HHHHHHHHHH-HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT------------------
T ss_pred             HHHHHHHHHH-hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc------------------
Confidence            3556665543 567789999999999999999999876789999999999999999888762                  


Q ss_pred             eEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-------CCCCeeEE
Q psy7837         134 KVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-------DAAPYDVI  206 (299)
Q Consensus       134 ~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~~fD~v  206 (299)
                                                                     +...+++++.+|+.....       ..++||+|
T Consensus       119 -----------------------------------------------g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I  151 (237)
T 3c3y_A          119 -----------------------------------------------GVEHKINFIESDAMLALDNLLQGQESEGSYDFG  151 (237)
T ss_dssp             -----------------------------------------------TCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEE
T ss_pred             -----------------------------------------------CCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEE
Confidence                                                           233479999998764211       13679999


Q ss_pred             Eecchhh---hHHHHHHHhccCCcEEEEEec
Q psy7837         207 YISQAIR---DIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       207 ~~~~~~~---~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      +++....   ...+.+.++|+|||.+++...
T Consensus       152 ~~d~~~~~~~~~l~~~~~~L~pGG~lv~d~~  182 (237)
T 3c3y_A          152 FVDADKPNYIKYHERLMKLVKVGGIVAYDNT  182 (237)
T ss_dssp             EECSCGGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred             EECCchHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            9987654   455788999999999998653

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.36  E-value=1.2e-12  Score=108.46  Aligned_cols=100  Identities=16%  Similarity=0.190  Sum_probs=81.3

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-CCCCCeeE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-PDAAPYDV  205 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~  205 (299)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.++++++..    +...+++++.+|+.... ...+ ||+
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~----~~~~~v~~~~~d~~~~~~~~~~-fD~  129 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDN----GLIDRVELQVGDPLGIAAGQRD-IDI  129 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH----SGGGGEEEEESCHHHHHTTCCS-EEE
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC----CCCceEEEEEecHHHHhccCCC-CCE
Confidence            45789999999999999999887   678999999999999999998763    23457999999986431 1235 999


Q ss_pred             EEecchhh---hHHHHHHHhccCCcEEEEEec
Q psy7837         206 IYISQAIR---DIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       206 v~~~~~~~---~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      |+++....   .+.+++.++|+|||.+++...
T Consensus       130 v~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  161 (210)
T 3c3p_A          130 LFMDCDVFNGADVLERMNRCLAKNALLIAVNA  161 (210)
T ss_dssp             EEEETTTSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred             EEEcCChhhhHHHHHHHHHhcCCCeEEEEECc
Confidence            99986543   456789999999999998643

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.36  E-value=5.5e-12  Score=108.70  Aligned_cols=106  Identities=18%  Similarity=0.224  Sum_probs=82.7

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHc-C--CeEEEEeCChH------HHHHHHHHHHhcCCcccCCCCeEEEEcC-CC--
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYM-G--AKVYAIEHVKN------LCKRAMKNIRRGAPAIALAENFEFVCAD-GR--  194 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~-~--~~v~~~D~~~~------~~~~a~~~~~~~~~~~~~~~~v~~~~~d-~~--  194 (299)
                      ..+.++.+|||||||+|.++..+++. +  .+|+++|+|+.      +++.+++++...    ....+++++.+| ..  
T Consensus        39 ~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~----~~~~~v~~~~~d~~~~~  114 (275)
T 3bkx_A           39 WQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAG----PLGDRLTVHFNTNLSDD  114 (275)
T ss_dssp             HTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTS----TTGGGEEEECSCCTTTC
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhc----CCCCceEEEECChhhhc
Confidence            35678899999999999999999987 4  78999999997      999999998763    233689999998 32  


Q ss_pred             CCCCCCCCeeEEEecchhhhHH------HHHHHhccCCcEEEEEecCC
Q psy7837         195 RGYPDAAPYDVIYISQAIRDIP------WHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       195 ~~~~~~~~fD~v~~~~~~~~~~------~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ......++||+|++..+++++.      +.+..+++|||.+++.....
T Consensus       115 ~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~  162 (275)
T 3bkx_A          115 LGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSM  162 (275)
T ss_dssp             CGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECS
T ss_pred             cCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            2222447899999998886543      45566667799999976543

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.36  E-value=5.4e-12  Score=112.86  Aligned_cols=108  Identities=24%  Similarity=0.232  Sum_probs=84.7

Q ss_pred             HHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC
Q psy7837         120 IKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP  198 (299)
Q Consensus       120 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  198 (299)
                      .+.+.......++.+|||+|||+|.++..+++.+. +|+++|.++ +++.++++++.+    +...+++++.+|+.....
T Consensus        39 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~----~l~~~v~~~~~d~~~~~~  113 (348)
T 2y1w_A           39 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSN----NLTDRIVVIPGKVEEVSL  113 (348)
T ss_dssp             HHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHT----TCTTTEEEEESCTTTCCC
T ss_pred             HHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHc----CCCCcEEEEEcchhhCCC
Confidence            34444444566889999999999999999999875 899999996 889999988873    344789999999987543


Q ss_pred             CCCCeeEEEecchhh--------hHHHHHHHhccCCcEEEEEe
Q psy7837         199 DAAPYDVIYISQAIR--------DIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       199 ~~~~fD~v~~~~~~~--------~~~~~~~~~L~~gG~lv~~~  233 (299)
                      + ++||+|++..+..        ....++.++|+|||.+++..
T Consensus       114 ~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  155 (348)
T 2y1w_A          114 P-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI  155 (348)
T ss_dssp             S-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred             C-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence            3 6799999986543        22346689999999998654

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.36  E-value=4.9e-12  Score=117.40  Aligned_cols=112  Identities=15%  Similarity=0.186  Sum_probs=87.9

Q ss_pred             HHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEE
Q psy7837          59 ELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDI  138 (299)
Q Consensus        59 ~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDi  138 (299)
                      ..|...+++|++|||+|||+|..|..+++.++..++|+++|+++.+++.+++++.+                        
T Consensus       109 ~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r------------------------  164 (479)
T 2frx_A          109 AALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISR------------------------  164 (479)
T ss_dssp             HHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHH------------------------
T ss_pred             HHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH------------------------
Confidence            44442223999999999999999999999988778999999999999999888876                        


Q ss_pred             cCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCeeEEEecchhh----
Q psy7837         139 GSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYDVIYISQAIR----  213 (299)
Q Consensus       139 G~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~~~----  213 (299)
                                                                .+..++.++++|+..... ..++||+|+++++..    
T Consensus       165 ------------------------------------------~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~PcSg~G~  202 (479)
T 2frx_A          165 ------------------------------------------CGISNVALTHFDGRVFGAAVPEMFDAILLDAPCSGEGV  202 (479)
T ss_dssp             ------------------------------------------HTCCSEEEECCCSTTHHHHSTTCEEEEEEECCCCCGGG
T ss_pred             ------------------------------------------cCCCcEEEEeCCHHHhhhhccccCCEEEECCCcCCccc
Confidence                                                      345689999999876322 236799999975431    


Q ss_pred             ------------------------hHHHHHHHhccCCcEEEEEecCC
Q psy7837         214 ------------------------DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       214 ------------------------~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                                              .+.+++.++|||||+|++++.+.
T Consensus       203 ~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~  249 (479)
T 2frx_A          203 VRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL  249 (479)
T ss_dssp             GGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             ccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence                                    23457889999999999986543

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.36  E-value=2.5e-12  Score=110.07  Aligned_cols=109  Identities=19%  Similarity=0.263  Sum_probs=83.8

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcc------------c------------C
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAI------------A------------L  182 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~------------~------------~  182 (299)
                      ...++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.+++++...+...            .            .
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL  132 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred             cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence            345678999999999999999998887 89999999999999999875520000            0            0


Q ss_pred             CCCe-EEEEcCCCCCCC-CC---CCeeEEEecchhh----h------HHHHHHHhccCCcEEEEEecCC
Q psy7837         183 AENF-EFVCADGRRGYP-DA---APYDVIYISQAIR----D------IPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       183 ~~~v-~~~~~d~~~~~~-~~---~~fD~v~~~~~~~----~------~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ..++ .++.+|+....+ ..   ++||+|++..+++    +      +.+++.++|+|||.+++.....
T Consensus       133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  201 (265)
T 2i62_A          133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALK  201 (265)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred             hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCC
Confidence            0127 899999886433 33   6899999998887    3      2357899999999999987543

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.36  E-value=2e-12  Score=108.54  Aligned_cols=119  Identities=18%  Similarity=0.221  Sum_probs=89.7

Q ss_pred             cCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhc
Q psy7837          48 MESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYG  127 (299)
Q Consensus        48 ~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~  127 (299)
                      ...|.. ..++..+.. ..++.+|||+|||+|+++..+++.+++.++++++|+++.+++.+++++...            
T Consensus        52 ~~~~~~-~~~l~~l~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------------  117 (229)
T 2avd_A           52 MMTCEQ-AQLLANLAR-LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA------------  117 (229)
T ss_dssp             SCCHHH-HHHHHHHHH-HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT------------
T ss_pred             ccCHHH-HHHHHHHHH-hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC------------
Confidence            344444 344444432 678899999999999999999998766678999999999988888887762            


Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC----C--CC
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP----D--AA  201 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~--~~  201 (299)
                                                                           +...+++++.+|+.....    .  .+
T Consensus       118 -----------------------------------------------------g~~~~i~~~~~d~~~~~~~~~~~~~~~  144 (229)
T 2avd_A          118 -----------------------------------------------------EAEHKIDLRLKPALETLDELLAAGEAG  144 (229)
T ss_dssp             -----------------------------------------------------TCTTTEEEEESCHHHHHHHHHHTTCTT
T ss_pred             -----------------------------------------------------CCCCeEEEEEcCHHHHHHHHHhcCCCC
Confidence                                                                 234689999998754211    1  15


Q ss_pred             CeeEEEecchhh---hHHHHHHHhccCCcEEEEEe
Q psy7837         202 PYDVIYISQAIR---DIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       202 ~fD~v~~~~~~~---~~~~~~~~~L~~gG~lv~~~  233 (299)
                      +||+|+++....   ...+.+.++|+|||.+++..
T Consensus       145 ~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~  179 (229)
T 2avd_A          145 TFDVAVVDADKENCSAYYERCLQLLRPGGILAVLR  179 (229)
T ss_dssp             CEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence            799999987654   45678999999999999864

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.35  E-value=1.5e-12  Score=109.37  Aligned_cols=99  Identities=22%  Similarity=0.205  Sum_probs=76.7

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHH--cCCeEEEEeCC-hHHHHHH---HHHHHhcCCcccCCCCeEEEEcCCCCCCCC-CCC
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAY--MGAKVYAIEHV-KNLCKRA---MKNIRRGAPAIALAENFEFVCADGRRGYPD-AAP  202 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~--~~~~v~~~D~~-~~~~~~a---~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~  202 (299)
                      .++.+|||||||+|.++..+++  .+.+|+|+|+| +.+++.|   ++++..     ....++.++++|+...... ...
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~-----~~~~~v~~~~~d~~~l~~~~~d~   97 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSK-----GGLSNVVFVIAAAESLPFELKNI   97 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGG-----TCCSSEEEECCBTTBCCGGGTTC
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHH-----cCCCCeEEEEcCHHHhhhhccCe
Confidence            4678999999999999999985  46789999999 7777766   766655     3556899999998875321 256


Q ss_pred             eeEEEecchhh-----------hHHHHHHHhccCCcEEEEEe
Q psy7837         203 YDVIYISQAIR-----------DIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       203 fD~v~~~~~~~-----------~~~~~~~~~L~~gG~lv~~~  233 (299)
                      +|.++++.++.           .+..++.++|||||++++..
T Consensus        98 v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~  139 (225)
T 3p2e_A           98 ADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT  139 (225)
T ss_dssp             EEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred             EEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence            78787765432           24578999999999999944

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.35  E-value=4.6e-12  Score=108.98  Aligned_cols=98  Identities=23%  Similarity=0.242  Sum_probs=82.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      .++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.++++.          .++.+..+|........++||+|+
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~----------~~~~~~~~d~~~~~~~~~~fD~v~  153 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----------PQVTFCVASSHRLPFSDTSMDAII  153 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----------TTSEEEECCTTSCSBCTTCEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC----------CCcEEEEcchhhCCCCCCceeEEE
Confidence            46889999999999999999987  789999999999999998762          467899999876555557899999


Q ss_pred             ecchhhhHHHHHHHhccCCcEEEEEecCCCC
Q psy7837         208 ISQAIRDIPWHIVDQLKLGGRMLFIKGHEDD  238 (299)
Q Consensus       208 ~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  238 (299)
                      +..+. ...+++.++|+|||.+++..+....
T Consensus       154 ~~~~~-~~l~~~~~~L~pgG~l~~~~~~~~~  183 (269)
T 1p91_A          154 RIYAP-CKAEELARVVKPGGWVITATPGPRH  183 (269)
T ss_dssp             EESCC-CCHHHHHHHEEEEEEEEEEEECTTT
T ss_pred             EeCCh-hhHHHHHHhcCCCcEEEEEEcCHHH
Confidence            87663 4568999999999999999876543

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.35  E-value=1.9e-12  Score=119.26  Aligned_cols=112  Identities=19%  Similarity=0.143  Sum_probs=88.4

Q ss_pred             HHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeE
Q psy7837          56 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKV  135 (299)
Q Consensus        56 ~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~v  135 (299)
                      .+...+.  +++|++|||+|||+|..+..+++.++..|+|+++|+++.+++.+++++.+                     
T Consensus        92 l~a~~L~--~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r---------------------  148 (464)
T 3m6w_A           92 AVGVLLD--PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVER---------------------  148 (464)
T ss_dssp             HHHHHHC--CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH---------------------
T ss_pred             HHHHhcC--cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH---------------------
Confidence            3334444  78999999999999999999999988778999999999999999888877                     


Q ss_pred             EEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCeeEEEecchh--
Q psy7837         136 LDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYDVIYISQAI--  212 (299)
Q Consensus       136 LDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~~--  212 (299)
                                                                   .+.. +.++++|+..... ..++||+|+++++.  
T Consensus       149 ---------------------------------------------~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D~PcSg  182 (464)
T 3m6w_A          149 ---------------------------------------------WGAP-LAVTQAPPRALAEAFGTYFHRVLLDAPCSG  182 (464)
T ss_dssp             ---------------------------------------------HCCC-CEEECSCHHHHHHHHCSCEEEEEEECCCCC
T ss_pred             ---------------------------------------------cCCe-EEEEECCHHHhhhhccccCCEEEECCCcCC
Confidence                                                         2444 8888888765321 23679999987653  


Q ss_pred             --------------------------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         213 --------------------------RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       213 --------------------------~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                                                ..+.+++.++|||||+|++++-+.
T Consensus       183 ~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~  232 (464)
T 3m6w_A          183 EGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF  232 (464)
T ss_dssp             GGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             ccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence                                      234567889999999999976544

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.35  E-value=9.3e-12  Score=104.83  Aligned_cols=95  Identities=15%  Similarity=0.134  Sum_probs=79.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe-
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI-  208 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~-  208 (299)
                      .++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++.          .++.++.+|+..... .++||+|++ 
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~----------~~~~~~~~d~~~~~~-~~~~D~v~~~  107 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL----------PDATLHQGDMRDFRL-GRKFSAVVSM  107 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC----------TTCEEEECCTTTCCC-SSCEEEEEEC
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC----------CCCEEEECCHHHccc-CCCCcEEEEc
Confidence            56789999999999999999998889999999999999998763          368899999887544 578999995 


Q ss_pred             cchhhh---------HHHHHHHhccCCcEEEEEecC
Q psy7837         209 SQAIRD---------IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       209 ~~~~~~---------~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ..++++         +.+++.++|+|||.+++....
T Consensus       108 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  143 (239)
T 3bxo_A          108 FSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWW  143 (239)
T ss_dssp             TTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred             CchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence            435443         336789999999999998643

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.34  E-value=2.1e-12  Score=108.87  Aligned_cols=115  Identities=22%  Similarity=0.261  Sum_probs=88.1

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCe
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSK  134 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  134 (299)
                      ..++..+.. ..++.+|||+|||+|+.+..+++.+++.++++++|+++.+++.+++++...                   
T Consensus        61 ~~~l~~l~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-------------------  120 (232)
T 3cbg_A           61 AQFLGLLIS-LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKA-------------------  120 (232)
T ss_dssp             HHHHHHHHH-HHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH-------------------
T ss_pred             HHHHHHHHH-hcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-------------------
Confidence            445554442 567889999999999999999998876789999999999999998887662                   


Q ss_pred             EEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC----CCC--CCeeEEEe
Q psy7837         135 VLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY----PDA--APYDVIYI  208 (299)
Q Consensus       135 vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~--~~fD~v~~  208 (299)
                                                                    +...+++++.+|+....    ...  ++||+|++
T Consensus       121 ----------------------------------------------g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~  154 (232)
T 3cbg_A          121 ----------------------------------------------GVAEKISLRLGPALATLEQLTQGKPLPEFDLIFI  154 (232)
T ss_dssp             ----------------------------------------------TCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEE
T ss_pred             ----------------------------------------------CCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEE
Confidence                                                          23357899999875321    112  67999999


Q ss_pred             cchhh---hHHHHHHHhccCCcEEEEEecC
Q psy7837         209 SQAIR---DIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       209 ~~~~~---~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      +....   ...+++.++|+|||.+++....
T Consensus       155 d~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  184 (232)
T 3cbg_A          155 DADKRNYPRYYEIGLNLLRRGGLMVIDNVL  184 (232)
T ss_dssp             CSCGGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred             CCCHHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            87643   4557889999999999997543

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.34  E-value=1.5e-12  Score=104.39  Aligned_cols=91  Identities=15%  Similarity=0.151  Sum_probs=76.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS  209 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  209 (299)
                      .++.+|||+|||+|.++..+++.+ +|+++|+|+.+++.              ..+++++++|+..... .++||+|+++
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~--------------~~~~~~~~~d~~~~~~-~~~fD~i~~n   85 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES--------------HRGGNLVRADLLCSIN-QESVDVVVFN   85 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT--------------CSSSCEEECSTTTTBC-GGGCSEEEEC
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc--------------ccCCeEEECChhhhcc-cCCCCEEEEC
Confidence            457799999999999999999999 99999999999976              2368899999987443 3789999999


Q ss_pred             chhh---------------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837         210 QAIR---------------DIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       210 ~~~~---------------~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      .++.               .+.+++.+.| |||.+++......
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~  127 (170)
T 3q87_B           86 PPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEAN  127 (170)
T ss_dssp             CCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGG
T ss_pred             CCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCC
Confidence            8765               3456788888 9999999876543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.34  E-value=5.8e-12  Score=103.41  Aligned_cols=103  Identities=18%  Similarity=0.168  Sum_probs=76.9

Q ss_pred             HHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc----CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCC
Q psy7837         118 TYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM----GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADG  193 (299)
Q Consensus       118 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~----~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  193 (299)
                      ++.+.+.....+.++.+|||+|||+|.++..+++.    +.+|+++|+++..                ...++.++++|+
T Consensus         9 kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------------~~~~v~~~~~d~   72 (201)
T 2plw_A            9 KLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------------PIPNVYFIQGEI   72 (201)
T ss_dssp             HHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------------CCTTCEEEECCT
T ss_pred             HHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------------CCCCceEEEccc
Confidence            33443444444677899999999999999999876    3679999999831                235789999998


Q ss_pred             CCCC-------------------------CCCCCeeEEEecchhhh-----------------HHHHHHHhccCCcEEEE
Q psy7837         194 RRGY-------------------------PDAAPYDVIYISQAIRD-----------------IPWHIVDQLKLGGRMLF  231 (299)
Q Consensus       194 ~~~~-------------------------~~~~~fD~v~~~~~~~~-----------------~~~~~~~~L~~gG~lv~  231 (299)
                      ....                         ...++||+|+++..++.                 +.+++.++|+|||.+++
T Consensus        73 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~  152 (201)
T 2plw_A           73 GKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIV  152 (201)
T ss_dssp             TTTSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cchhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence            7643                         23468999999865432                 34568899999999999


Q ss_pred             EecCC
Q psy7837         232 IKGHE  236 (299)
Q Consensus       232 ~~~~~  236 (299)
                      .....
T Consensus       153 ~~~~~  157 (201)
T 2plw_A          153 KMYLG  157 (201)
T ss_dssp             EEECS
T ss_pred             EEeCC
Confidence            76554

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.34  E-value=3.6e-12  Score=106.11  Aligned_cols=105  Identities=16%  Similarity=0.168  Sum_probs=77.5

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI  206 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  206 (299)
                      ..++.+|||+|||+|.++..+++.  +.+|+++|+|+.+++.+.++++..... ....+++++++|+.......+. |.+
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~-~~~~~v~~~~~d~~~l~~~~~~-d~v  102 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAK-GGLPNLLYLWATAERLPPLSGV-GEL  102 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGG-TCCTTEEEEECCSTTCCSCCCE-EEE
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhh-cCCCceEEEecchhhCCCCCCC-CEE
Confidence            356889999999999999999988  678999999999888644333221000 3456899999999875544444 766


Q ss_pred             Eecch---h--------hhHHHHHHHhccCCcEEEEEecC
Q psy7837         207 YISQA---I--------RDIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       207 ~~~~~---~--------~~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ++...   .        ..+.+++.++|||||.+++....
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  142 (218)
T 3mq2_A          103 HVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNL  142 (218)
T ss_dssp             EEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEG
T ss_pred             EEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEecc
Confidence            64432   2        34557899999999999997643

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.34  E-value=2.1e-11  Score=105.74  Aligned_cols=110  Identities=17%  Similarity=0.203  Sum_probs=80.7

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeC-ChHHHHHHHHHHHhcCCcccCC-----CCeEEEEcCCCCC---
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEH-VKNLCKRAMKNIRRGAPAIALA-----ENFEFVCADGRRG---  196 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~-~~~~~~~a~~~~~~~~~~~~~~-----~~v~~~~~d~~~~---  196 (299)
                      ....++.+|||+|||+|.+++.+++.+. +|+++|+ ++.+++.++++++.|.......     .++.+...|....   
T Consensus        75 ~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~  154 (281)
T 3bzb_A           75 PELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDS  154 (281)
T ss_dssp             GGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHH
T ss_pred             chhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHH
Confidence            3446788999999999999999999887 8999999 8999999999984321000122     3788886665432   


Q ss_pred             CC---CCCCeeEEEecchhh------hHHHHHHHhcc---C--CcEEEEEecCC
Q psy7837         197 YP---DAAPYDVIYISQAIR------DIPWHIVDQLK---L--GGRMLFIKGHE  236 (299)
Q Consensus       197 ~~---~~~~fD~v~~~~~~~------~~~~~~~~~L~---~--gG~lv~~~~~~  236 (299)
                      ..   ..++||+|++..++.      .+.+.+.++|+   |  ||++++...+.
T Consensus       155 ~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~  208 (281)
T 3bzb_A          155 LQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHH  208 (281)
T ss_dssp             HHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC-
T ss_pred             HHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEee
Confidence            11   236799999866543      45678999999   9  99988876654

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.33  E-value=4.1e-12  Score=116.91  Aligned_cols=133  Identities=16%  Similarity=0.126  Sum_probs=99.1

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC----CCCC
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP----DAAP  202 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~  202 (299)
                      ....++.+|||+|||+|.+++.+++.+.+|+++|+|+.+++.|++|++.     .+..+++|+.+|+.....    ..++
T Consensus       282 l~~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~-----~~~~~v~f~~~d~~~~l~~~~~~~~~  356 (433)
T 1uwv_A          282 LDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARL-----NGLQNVTFYHENLEEDVTKQPWAKNG  356 (433)
T ss_dssp             HTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHH-----TTCCSEEEEECCTTSCCSSSGGGTTC
T ss_pred             hcCCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHH-----cCCCceEEEECCHHHHhhhhhhhcCC
Confidence            3456788999999999999999999999999999999999999999988     355699999999987432    2357


Q ss_pred             eeEEEecchhhh---HHHHHHHhccCCcEEEEEecCCCCcceeeeEEeecCCceEEEEecceeccccccc
Q psy7837         203 YDVIYISQAIRD---IPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKS  269 (299)
Q Consensus       203 fD~v~~~~~~~~---~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (299)
                      ||+|+++++...   +.+.+. .++|++++++++.+......+..+   .+.++....+.++.++ |.+.
T Consensus       357 fD~Vv~dPPr~g~~~~~~~l~-~~~p~~ivyvsc~p~tlard~~~l---~~~Gy~~~~~~~~d~F-p~t~  421 (433)
T 1uwv_A          357 FDKVLLDPARAGAAGVMQQII-KLEPIRIVYVSCNPATLARDSEAL---LKAGYTIARLAMLDMF-PHTG  421 (433)
T ss_dssp             CSEEEECCCTTCCHHHHHHHH-HHCCSEEEEEESCHHHHHHHHHHH---HHTTCEEEEEEEECCS-TTSS
T ss_pred             CCEEEECCCCccHHHHHHHHH-hcCCCeEEEEECChHHHHhhHHHH---HHCCcEEEEEEEeccC-CCCC
Confidence            999999987643   333333 368999999988655333222222   2345777777777776 5443

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.33  E-value=1.9e-11  Score=112.97  Aligned_cols=107  Identities=19%  Similarity=0.238  Sum_probs=86.9

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY  144 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~  144 (299)
                      +++|++|||+|||+|..+..+++.++..++++++|+++.+++.+++++..                              
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~------------------------------  306 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKR------------------------------  306 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH------------------------------
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH------------------------------
Confidence            88999999999999999999999886668899999999988888888776                              


Q ss_pred             HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCCCCeeEEEecchh----------
Q psy7837         145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDAAPYDVIYISQAI----------  212 (299)
Q Consensus       145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~~~~~----------  212 (299)
                                                          .+..++.++++|+....  ...++||+|+++++.          
T Consensus       307 ------------------------------------~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p  350 (450)
T 2yxl_A          307 ------------------------------------MGIKIVKPLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNP  350 (450)
T ss_dssp             ------------------------------------TTCCSEEEECSCTTCCSSSSCSSCEEEEEEECCCCCGGGTTTST
T ss_pred             ------------------------------------cCCCcEEEEEcChhhcchhhccCCCCEEEEcCCCCCCeeeccCh
Confidence                                                34568999999987643  223679999986543          


Q ss_pred             ------------------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         213 ------------------RDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       213 ------------------~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                                        ..+.+++.++|||||++++++.+..
T Consensus       351 d~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~  393 (450)
T 2yxl_A          351 ELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF  393 (450)
T ss_dssp             THHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred             hhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence                              2345688999999999999876544

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.32  E-value=1.3e-11  Score=108.62  Aligned_cols=107  Identities=15%  Similarity=0.094  Sum_probs=83.2

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCc--ccCCCCeEEEEcCCCCCC----C--CC
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPA--IALAENFEFVCADGRRGY----P--DA  200 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~--~~~~~~v~~~~~d~~~~~----~--~~  200 (299)
                      .++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++.......  .....++.++++|+....    .  ..
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  112 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ  112 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred             CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence            46789999999999999999876 568999999999999999987652000  003357999999998643    2  23


Q ss_pred             CCeeEEEecchhhhH----------HHHHHHhccCCcEEEEEecCC
Q psy7837         201 APYDVIYISQAIRDI----------PWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       201 ~~fD~v~~~~~~~~~----------~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ++||+|++..+++++          .+++.++|+|||.+++.++..
T Consensus       113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  158 (313)
T 3bgv_A          113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS  158 (313)
T ss_dssp             CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence            589999999888554          357889999999999998754

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.32  E-value=1.4e-11  Score=111.15  Aligned_cols=101  Identities=19%  Similarity=0.165  Sum_probs=81.7

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCC--eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGA--KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI  206 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~--~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  206 (299)
                      ..++.+|||+|||+|.+++.++..+.  +|+++|+++.+++.|++|++.+    +...+++++++|+.......++||+|
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~----gl~~~i~~~~~D~~~~~~~~~~fD~I  290 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAA----GVLDKIKFIQGDATQLSQYVDSVDFA  290 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHT----TCGGGCEEEECCGGGGGGTCSCEEEE
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc----CCCCceEEEECChhhCCcccCCcCEE
Confidence            56789999999999999999999987  8999999999999999999873    23368999999998765555789999


Q ss_pred             Eecchh--------------hhHHHHHHHhccCCcEEEEEecC
Q psy7837         207 YISQAI--------------RDIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       207 ~~~~~~--------------~~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ++++++              ..+.+++.++|  +|.+++....
T Consensus       291 i~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~  331 (373)
T 3tm4_A          291 ISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTE  331 (373)
T ss_dssp             EEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESC
T ss_pred             EECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECC
Confidence            998773              22345677777  6666666554

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.31  E-value=8.3e-12  Score=102.10  Aligned_cols=104  Identities=17%  Similarity=0.194  Sum_probs=78.2

Q ss_pred             HHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC
Q psy7837         118 TYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY  197 (299)
Q Consensus       118 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  197 (299)
                      ++.+.+.....+.++.+|||+|||+|.++..+++.+.+|+++|+++.                ....+++++++|+....
T Consensus        12 KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~----------------~~~~~v~~~~~D~~~~~   75 (191)
T 3dou_A           12 KLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEM----------------EEIAGVRFIRCDIFKET   75 (191)
T ss_dssp             HHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCC----------------CCCTTCEEEECCTTSSS
T ss_pred             HHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEecccc----------------ccCCCeEEEEccccCHH
Confidence            34444444445678999999999999999999999999999999874                12358999999987642


Q ss_pred             C--------C---CCCeeEEEecchh-----------------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         198 P--------D---AAPYDVIYISQAI-----------------RDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       198 ~--------~---~~~fD~v~~~~~~-----------------~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      .        .   .++||+|++++..                 ..+.+.+.++|||||.|++.+....
T Consensus        76 ~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~  143 (191)
T 3dou_A           76 IFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGD  143 (191)
T ss_dssp             HHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST
T ss_pred             HHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCC
Confidence            1        0   0379999997642                 1233567899999999999876543

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.31  E-value=5e-12  Score=116.29  Aligned_cols=112  Identities=19%  Similarity=0.164  Sum_probs=89.2

Q ss_pred             HHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEE
Q psy7837          57 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVL  136 (299)
Q Consensus        57 ~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vL  136 (299)
                      +...+.  +++|++|||+|||+|..|..+++.++..|+|+++|+++..++.+++++.+                      
T Consensus        97 ~~~~L~--~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r----------------------  152 (456)
T 3m4x_A           97 VGTAAA--AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIER----------------------  152 (456)
T ss_dssp             HHHHHC--CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHH----------------------
T ss_pred             HHHHcC--CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH----------------------
Confidence            334444  78999999999999999999999988778999999999999999888877                      


Q ss_pred             EEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCeeEEEecchh---
Q psy7837         137 DIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYDVIYISQAI---  212 (299)
Q Consensus       137 DiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~~---  212 (299)
                                                                  .+..++.++++|+..... ..++||+|+++++.   
T Consensus       153 --------------------------------------------~g~~nv~v~~~Da~~l~~~~~~~FD~Il~DaPCSg~  188 (456)
T 3m4x_A          153 --------------------------------------------WGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPCSGE  188 (456)
T ss_dssp             --------------------------------------------HTCSSEEEECCCHHHHHHHHTTCEEEEEEECCCCCG
T ss_pred             --------------------------------------------cCCCceEEEeCCHHHhhhhccccCCEEEECCCCCCc
Confidence                                                        345688999998765321 23679999998762   


Q ss_pred             -------------------------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         213 -------------------------RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       213 -------------------------~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                                               ..+.+++.++|||||+|++++-+.
T Consensus       189 G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  237 (456)
T 3m4x_A          189 GMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF  237 (456)
T ss_dssp             GGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             cccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence                                     034567889999999999876544

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.31  E-value=3.3e-12  Score=115.72  Aligned_cols=104  Identities=17%  Similarity=0.173  Sum_probs=84.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCC--CeEEEEcCCCCCCC----CCCC
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAE--NFEFVCADGRRGYP----DAAP  202 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~----~~~~  202 (299)
                      .++.+|||+|||+|.+++.+++.++ +|+++|+|+.+++.|++|++.+     +..  +++++++|+.....    ...+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n-----~~~~~~v~~~~~D~~~~l~~~~~~~~~  285 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEAN-----HLDMANHQLVVMDVFDYFKYARRHHLT  285 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHT-----TCCCTTEEEEESCHHHHHHHHHHTTCC
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCccceEEEECCHHHHHHHHHHhCCC
Confidence            5688999999999999999999876 7999999999999999999884     333  89999999875321    1357


Q ss_pred             eeEEEecchhh---------------hHHHHHHHhccCCcEEEEEecCCCC
Q psy7837         203 YDVIYISQAIR---------------DIPWHIVDQLKLGGRMLFIKGHEDD  238 (299)
Q Consensus       203 fD~v~~~~~~~---------------~~~~~~~~~L~~gG~lv~~~~~~~~  238 (299)
                      ||+|+++++..               .+...+.++|+|||.+++++.+...
T Consensus       286 fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~  336 (385)
T 2b78_A          286 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANM  336 (385)
T ss_dssp             EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS
T ss_pred             ccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcC
Confidence            99999987652               1334568999999999999876653

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.31  E-value=1e-11  Score=103.65  Aligned_cols=96  Identities=21%  Similarity=0.224  Sum_probs=79.7

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC--CCCCCCCeeEEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR--GYPDAAPYDVIY  207 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~v~  207 (299)
                      .++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++.            .+++.+|+..  .....++||+|+
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~------------~~~~~~d~~~~~~~~~~~~fD~v~   98 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL------------DHVVLGDIETMDMPYEEEQFDCVI   98 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS------------SEEEESCTTTCCCCSCTTCEEEEE
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC------------CcEEEcchhhcCCCCCCCccCEEE
Confidence            57889999999999999999988889999999999999887652            2678888875  233447899999


Q ss_pred             ecchhhhH------HHHHHHhccCCcEEEEEecCCC
Q psy7837         208 ISQAIRDI------PWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       208 ~~~~~~~~------~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      +..+++++      .+++.++|+|||.+++..+...
T Consensus        99 ~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  134 (230)
T 3cc8_A           99 FGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVS  134 (230)
T ss_dssp             EESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTT
T ss_pred             ECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence            99887654      4688899999999999987643

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.31  E-value=3.5e-12  Score=115.48  Aligned_cols=102  Identities=19%  Similarity=0.222  Sum_probs=85.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC----CCCCeeEE
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP----DAAPYDVI  206 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fD~v  206 (299)
                      ++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++|++.+     +..+++++.+|+.....    ...+||+|
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n-----~~~~~~~~~~d~~~~~~~~~~~~~~fD~I  283 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLN-----GLGNVRVLEANAFDLLRRLEKEGERFDLV  283 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHT-----TCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHc-----CCCCceEEECCHHHHHHHHHhcCCCeeEE
Confidence            7889999999999999999988778999999999999999999983     55569999999875322    13679999


Q ss_pred             Eecchh---------------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         207 YISQAI---------------RDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       207 ~~~~~~---------------~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      +++++.               ..+...+.++|+|||.+++++.+..
T Consensus       284 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  329 (382)
T 1wxx_A          284 VLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH  329 (382)
T ss_dssp             EECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            998754               2345678999999999999987654

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.30  E-value=3.3e-12  Score=111.38  Aligned_cols=103  Identities=17%  Similarity=0.175  Sum_probs=75.0

Q ss_pred             CCCCeEEEEcCCCcHHHHHH----HHc--CCe--EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEE--EcCCCCCC--
Q psy7837         130 VYGSKVLDIGSGSGYLSALF----AYM--GAK--VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV--CADGRRGY--  197 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~l----a~~--~~~--v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~--~~d~~~~~--  197 (299)
                      .++.+|||||||+|.++..+    +..  +..  ++++|+|++|++.+++++...    ....++.+.  .++.....  
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~----~~~~~v~~~~~~~~~~~~~~~  126 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKT----SNLENVKFAWHKETSSEYQSR  126 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTC----SSCTTEEEEEECSCHHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhc----cCCCcceEEEEecchhhhhhh
Confidence            56779999999999876533    222  444  499999999999999988651    134555554  44443211  


Q ss_pred             ----CCCCCeeEEEecchhhhHH------HHHHHhccCCcEEEEEecCC
Q psy7837         198 ----PDAAPYDVIYISQAIRDIP------WHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       198 ----~~~~~fD~v~~~~~~~~~~------~~~~~~L~~gG~lv~~~~~~  236 (299)
                          ...++||+|++..+++++.      +++.++|||||++++.....
T Consensus       127 ~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  175 (292)
T 2aot_A          127 MLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG  175 (292)
T ss_dssp             HHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred             hccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence                2347899999999987653      58999999999999986554

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.30  E-value=5e-11  Score=105.80  Aligned_cols=101  Identities=17%  Similarity=0.156  Sum_probs=83.2

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI  206 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  206 (299)
                      ..+..+|||+|||+|.++..+++.  +.+++++|+ +.+++.+++++...    ....+++++.+|+....+.  +||+|
T Consensus       167 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~----~~~~~v~~~~~d~~~~~p~--~~D~v  239 (332)
T 3i53_A          167 WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDT----GLSGRAQVVVGSFFDPLPA--GAGGY  239 (332)
T ss_dssp             CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT----TCTTTEEEEECCTTSCCCC--SCSEE
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhc----CcCcCeEEecCCCCCCCCC--CCcEE
Confidence            355789999999999999999875  568999999 99999999998763    3457899999999854332  79999


Q ss_pred             EecchhhhH--------HHHHHHhccCCcEEEEEecCC
Q psy7837         207 YISQAIRDI--------PWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       207 ~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ++..+++++        .+++.+.|+|||++++.....
T Consensus       240 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~  277 (332)
T 3i53_A          240 VLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVA  277 (332)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCC
T ss_pred             EEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecC
Confidence            999988643        457899999999999976543

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.30  E-value=5.9e-12  Score=114.08  Aligned_cols=102  Identities=15%  Similarity=0.089  Sum_probs=81.2

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC-CCCeeEEEe
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD-AAPYDVIYI  208 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~~  208 (299)
                      .++.+|||+|||+|.+++.+++.|+.|+++|+|+.+++.+++|++.+     +.. ..+.++|+...... .+.||+|++
T Consensus       213 ~~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~n-----g~~-~~~~~~D~~~~l~~~~~~fD~Ii~  286 (393)
T 4dmg_A          213 RPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRL-----GLR-VDIRHGEALPTLRGLEGPFHHVLL  286 (393)
T ss_dssp             CTTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-----TCC-CEEEESCHHHHHHTCCCCEEEEEE
T ss_pred             cCCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHh-----CCC-CcEEEccHHHHHHHhcCCCCEEEE
Confidence            35899999999999999999999999999999999999999999884     332 35668888753211 234999999


Q ss_pred             cchh---------------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         209 SQAI---------------RDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       209 ~~~~---------------~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      +++.               ..+.+.+.++|+|||.|++......
T Consensus       287 dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~  330 (393)
T 4dmg_A          287 DPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH  330 (393)
T ss_dssp             CCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             CCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            9875               2455678999999999996655443

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.30  E-value=1.1e-12  Score=110.66  Aligned_cols=112  Identities=25%  Similarity=0.299  Sum_probs=73.5

Q ss_pred             HHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEE-cCCCC
Q psy7837         118 TYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVC-ADGRR  195 (299)
Q Consensus       118 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~-~d~~~  195 (299)
                      ++.+.+..+....++.+|||+|||+|.++..+++.++ +|+++|+|+.|++.++++..+..  .....++.+.. .|...
T Consensus        24 kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~--~~~~~~~~~~~~~~~~~  101 (232)
T 3opn_A           24 KLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVV--VMEQFNFRNAVLADFEQ  101 (232)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEE--EECSCCGGGCCGGGCCS
T ss_pred             HHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcccc--ccccceEEEeCHhHcCc
Confidence            4444455554455678999999999999999999985 89999999999998777533200  00111222222 22222


Q ss_pred             CCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEe
Q psy7837         196 GYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       196 ~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~  233 (299)
                      ..+....||+++++  +..+.+++.++|||||.+++.+
T Consensus       102 ~~~d~~~~D~v~~~--l~~~l~~i~rvLkpgG~lv~~~  137 (232)
T 3opn_A          102 GRPSFTSIDVSFIS--LDLILPPLYEILEKNGEVAALI  137 (232)
T ss_dssp             CCCSEEEECCSSSC--GGGTHHHHHHHSCTTCEEEEEE
T ss_pred             CCCCEEEEEEEhhh--HHHHHHHHHHhccCCCEEEEEE
Confidence            11222345555443  3667889999999999999975

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.30  E-value=1.5e-12  Score=117.37  Aligned_cols=129  Identities=16%  Similarity=0.146  Sum_probs=97.4

Q ss_pred             CCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---CCC--------
Q psy7837         132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---PDA--------  200 (299)
Q Consensus       132 ~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~--------  200 (299)
                      +.+|||+|||+|.+++.+++.+.+|+++|+++.+++.|++|++.+     +..+++++.+|+....   ...        
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~n-----g~~~v~~~~~d~~~~~~~~~~~~~~~~l~~  288 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAAN-----HIDNVQIIRMAAEEFTQAMNGVREFNRLQG  288 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHT-----TCCSEEEECCCSHHHHHHHSSCCCCTTGGG
T ss_pred             CCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHc-----CCCceEEEECCHHHHHHHHhhccccccccc
Confidence            578999999999999999998889999999999999999999883     5578999999986421   111        


Q ss_pred             -----CCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCC-CcceeeeEEeecCCceEEEEecceecccccccc
Q psy7837         201 -----APYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHED-DIMTLELLDKFVNGSVKTTVIHPHVYIHELKSL  270 (299)
Q Consensus       201 -----~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (299)
                           .+||+|+++++...+.+++.+.|+++|.+++..-++. ....+..+.   . .+....+.++.++ |.+.-
T Consensus       289 ~~~~~~~fD~Vv~dPPr~g~~~~~~~~l~~~g~ivyvsc~p~t~ard~~~l~---~-~y~~~~~~~~D~F-P~T~H  359 (369)
T 3bt7_A          289 IDLKSYQCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLS---Q-THKVERLALFDQF-PYTHH  359 (369)
T ss_dssp             SCGGGCCEEEEEECCCTTCCCHHHHHHHTTSSEEEEEESCHHHHHHHHHHHH---H-HEEEEEEEEECCS-TTSSC
T ss_pred             cccccCCCCEEEECcCccccHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHh---h-CcEEEEEEeeccC-CCCCc
Confidence                 2799999999887677778888888888877654432 112222221   1 3777777777777 65543

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.30  E-value=7.5e-11  Score=106.25  Aligned_cols=103  Identities=25%  Similarity=0.299  Sum_probs=85.0

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCe
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPY  203 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  203 (299)
                      .....++.+|||+|||+|.++..+++.  +.+++++|+ +.+++.+++++...    ....+++++.+|+....+.  +|
T Consensus       197 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~----~l~~~v~~~~~d~~~~~p~--~~  269 (369)
T 3gwz_A          197 AYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGR----GLADRCEILPGDFFETIPD--GA  269 (369)
T ss_dssp             HSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT----TCTTTEEEEECCTTTCCCS--SC
T ss_pred             hCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhc----CcCCceEEeccCCCCCCCC--Cc
Confidence            334567789999999999999999887  568999999 99999999998763    3457899999999854332  79


Q ss_pred             eEEEecchhhh--------HHHHHHHhccCCcEEEEEecC
Q psy7837         204 DVIYISQAIRD--------IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       204 D~v~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      |+|++..++++        +.+++.+.|+|||++++....
T Consensus       270 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~  309 (369)
T 3gwz_A          270 DVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNL  309 (369)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEB
T ss_pred             eEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            99999998854        446789999999999997643

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.30  E-value=1.2e-11  Score=114.87  Aligned_cols=109  Identities=25%  Similarity=0.250  Sum_probs=84.2

Q ss_pred             HHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC
Q psy7837         119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY  197 (299)
Q Consensus       119 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  197 (299)
                      +.+.+.......++.+|||+|||+|.++..+++.+. +|+++|+++ +++.|+++++.+    +...+++++.+|+....
T Consensus       146 ~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~----gl~~~v~~~~~d~~~~~  220 (480)
T 3b3j_A          146 YQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSN----NLTDRIVVIPGKVEEVS  220 (480)
T ss_dssp             HHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHT----TCTTTEEEEESCTTTCC
T ss_pred             HHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHc----CCCCcEEEEECchhhCc
Confidence            333343333456789999999999999999998864 899999998 999999998874    34478999999998743


Q ss_pred             CCCCCeeEEEecchhhhH--------HHHHHHhccCCcEEEEEe
Q psy7837         198 PDAAPYDVIYISQAIRDI--------PWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       198 ~~~~~fD~v~~~~~~~~~--------~~~~~~~L~~gG~lv~~~  233 (299)
                      .+ ++||+|+++.+..++        ...+.++|+|||.+++..
T Consensus       221 ~~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~  263 (480)
T 3b3j_A          221 LP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI  263 (480)
T ss_dssp             CS-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred             cC-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            33 579999998764322        235678999999998643

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.29  E-value=1e-11  Score=103.55  Aligned_cols=98  Identities=14%  Similarity=0.133  Sum_probs=80.1

Q ss_pred             hhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCe
Q psy7837         124 NFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPY  203 (299)
Q Consensus       124 ~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  203 (299)
                      ..+....++.+|||+|||+|.++..+++.    +++|+++.+++.++++            ++.++.+|+.......++|
T Consensus        40 ~~l~~~~~~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~------------~~~~~~~d~~~~~~~~~~f  103 (219)
T 1vlm_A           40 QAVKCLLPEGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR------------GVFVLKGTAENLPLKDESF  103 (219)
T ss_dssp             HHHHHHCCSSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT------------TCEEEECBTTBCCSCTTCE
T ss_pred             HHHHHhCCCCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc------------CCEEEEcccccCCCCCCCe
Confidence            33444455899999999999999988776    9999999999998764            5788999987755555789


Q ss_pred             eEEEecchhhh------HHHHHHHhccCCcEEEEEecCCC
Q psy7837         204 DVIYISQAIRD------IPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       204 D~v~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      |+|++..++++      +.+++.++|+|||.+++......
T Consensus       104 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~  143 (219)
T 1vlm_A          104 DFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRE  143 (219)
T ss_dssp             EEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             eEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeCCc
Confidence            99999988754      44688999999999999876543

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.29  E-value=1.1e-11  Score=110.62  Aligned_cols=100  Identities=19%  Similarity=0.219  Sum_probs=82.4

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      .++.+|||+|||+|.++..+++.+  .+|+++|+|+.+++.++++++.+     . .+..++.+|.....  .++||+|+
T Consensus       195 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~-----~-~~~~~~~~d~~~~~--~~~fD~Iv  266 (343)
T 2pjd_A          195 HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAAN-----G-VEGEVFASNVFSEV--KGRFDMII  266 (343)
T ss_dssp             TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHT-----T-CCCEEEECSTTTTC--CSCEEEEE
T ss_pred             CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh-----C-CCCEEEEccccccc--cCCeeEEE
Confidence            356799999999999999999886  58999999999999999998873     2 23677889987643  46899999


Q ss_pred             ecchhhh-----------HHHHHHHhccCCcEEEEEecCCC
Q psy7837         208 ISQAIRD-----------IPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       208 ~~~~~~~-----------~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      ++.+++.           +.+++.++|+|||.+++..+...
T Consensus       267 ~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  307 (343)
T 2pjd_A          267 SNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFL  307 (343)
T ss_dssp             ECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTS
T ss_pred             ECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCC
Confidence            9887652           34688999999999999876543

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.29  E-value=7.2e-12  Score=108.99  Aligned_cols=104  Identities=20%  Similarity=0.241  Sum_probs=75.4

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHH-cCCeEEEEeCChHHHHHHHHHHHhcCCcc------------cC-C------------
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAY-MGAKVYAIEHVKNLCKRAMKNIRRGAPAI------------AL-A------------  183 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~------------~~-~------------  183 (299)
                      .++.+|||+|||+|.+...++. .+.+|+++|+|+.+++.++++++......            .. .            
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            4678999999999996655554 37799999999999999998664310000            00 0            


Q ss_pred             CCeEEEEcCCCC-CC-----CCCCCeeEEEecchhhh----HH------HHHHHhccCCcEEEEEe
Q psy7837         184 ENFEFVCADGRR-GY-----PDAAPYDVIYISQAIRD----IP------WHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       184 ~~v~~~~~d~~~-~~-----~~~~~fD~v~~~~~~~~----~~------~~~~~~L~~gG~lv~~~  233 (299)
                      ..+.++.+|+.. .+     .+.++||+|+++.++++    +.      +++.++|||||+|++..
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~  215 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG  215 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            025677788876 22     12356999999999877    42      47899999999999974

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.29  E-value=1.8e-11  Score=108.97  Aligned_cols=99  Identities=18%  Similarity=0.172  Sum_probs=84.5

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS  209 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  209 (299)
                      .++.+|||+|||+|.+++. ++.+.+|+++|+|+.+++.+++|++.+    +...+++++++|+....   ++||+|+++
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n----~l~~~v~~~~~D~~~~~---~~fD~Vi~d  265 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLN----KLEHKIIPILSDVREVD---VKGNRVIMN  265 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHT----TCTTTEEEEESCGGGCC---CCEEEEEEC
T ss_pred             CCCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHc----CCCCcEEEEECChHHhc---CCCcEEEEC
Confidence            5789999999999999999 886678999999999999999999884    23368999999998765   679999998


Q ss_pred             chh--hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         210 QAI--RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       210 ~~~--~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      .+.  ..+.+.+.++|+|||.+++.....
T Consensus       266 pP~~~~~~l~~~~~~L~~gG~l~~~~~~~  294 (336)
T 2yx1_A          266 LPKFAHKFIDKALDIVEEGGVIHYYTIGK  294 (336)
T ss_dssp             CTTTGGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred             CcHhHHHHHHHHHHHcCCCCEEEEEEeec
Confidence            653  456788999999999998875544

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.29  E-value=6.5e-12  Score=108.75  Aligned_cols=108  Identities=17%  Similarity=0.117  Sum_probs=75.7

Q ss_pred             HHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEE-EEcCCCC
Q psy7837         118 TYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF-VCADGRR  195 (299)
Q Consensus       118 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~-~~~d~~~  195 (299)
                      ++.+.+..+....++.+|||+|||+|.++..+++.++ +|+++|++++|++.+.++-          .++.. ...|+..
T Consensus        72 Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~----------~rv~~~~~~ni~~  141 (291)
T 3hp7_A           72 KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD----------DRVRSMEQYNFRY  141 (291)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC----------TTEEEECSCCGGG
T ss_pred             HHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----------cccceecccCcee
Confidence            3344444444445788999999999999999999975 7999999999998754421          12222 1223322


Q ss_pred             CC---CCCCCeeEEEecchhh---hHHHHHHHhccCCcEEEEEecC
Q psy7837         196 GY---PDAAPYDVIYISQAIR---DIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       196 ~~---~~~~~fD~v~~~~~~~---~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ..   .+..+||+|+++..+.   .+.+++.++|+|||.+++.+.+
T Consensus       142 l~~~~l~~~~fD~v~~d~sf~sl~~vL~e~~rvLkpGG~lv~lvkP  187 (291)
T 3hp7_A          142 AEPVDFTEGLPSFASIDVSFISLNLILPALAKILVDGGQVVALVKP  187 (291)
T ss_dssp             CCGGGCTTCCCSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEEECG
T ss_pred             cchhhCCCCCCCEEEEEeeHhhHHHHHHHHHHHcCcCCEEEEEECc
Confidence            11   1224599999988764   4668999999999999998543

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.28  E-value=1.3e-11  Score=109.50  Aligned_cols=105  Identities=18%  Similarity=0.131  Sum_probs=82.5

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCCCCeeE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDAAPYDV  205 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~  205 (299)
                      ..+.+|||||||+|.++..+++.  +.+|+++|+++.+++.+++++...+.. ....+++++.+|+....  ...++||+
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~g-l~~~rv~~~~~D~~~~l~~~~~~~fDl  197 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIG-YEDPRVNLVIGDGVAFLKNAAEGSYDA  197 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG-GGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccc-cCCCcEEEEECCHHHHHHhccCCCccE
Confidence            45689999999999999999987  468999999999999999987641000 12468999999987532  12368999


Q ss_pred             EEecch----------hhhHHHHHHHhccCCcEEEEEecC
Q psy7837         206 IYISQA----------IRDIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       206 v~~~~~----------~~~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      |+++..          ...+.+.+.++|+|||++++....
T Consensus       198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  237 (334)
T 1xj5_A          198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES  237 (334)
T ss_dssp             EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence            999764          134667899999999999997544

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.27  E-value=7e-12  Score=114.07  Aligned_cols=103  Identities=21%  Similarity=0.203  Sum_probs=85.7

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCC-C-CeEEEEcCCCCCCC----CCCC
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALA-E-NFEFVCADGRRGYP----DAAP  202 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~-~-~v~~~~~d~~~~~~----~~~~  202 (299)
                      .++.+|||+|||+|.+++.+++.|+ +|+++|+++.+++.+++|++.+     +. . +++++.+|+.....    ...+
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~n-----gl~~~~v~~~~~D~~~~~~~~~~~~~~  293 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELN-----KLDLSKAEFVRDDVFKLLRTYRDRGEK  293 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT-----TCCGGGEEEEESCHHHHHHHHHHTTCC
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCccceEEEECCHHHHHHHHHhcCCC
Confidence            5688999999999999999999964 7999999999999999999884     33 3 89999999875322    1357


Q ss_pred             eeEEEecchh---------------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         203 YDVIYISQAI---------------RDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       203 fD~v~~~~~~---------------~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      ||+|+++++.               ..+...+.+.|+|||++++++.+..
T Consensus       294 fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  343 (396)
T 3c0k_A          294 FDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGL  343 (396)
T ss_dssp             EEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             CCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence            9999999754               3455678999999999999887654

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.27  E-value=2.3e-11  Score=105.67  Aligned_cols=83  Identities=18%  Similarity=0.190  Sum_probs=68.8

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      .....++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++++..    ....+++++++|+.....  ..||+
T Consensus        23 ~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~----~~~~~v~~~~~D~~~~~~--~~fD~   96 (285)
T 1zq9_A           23 KAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGT----PVASKLQVLVGDVLKTDL--PFFDT   96 (285)
T ss_dssp             HTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTS----TTGGGEEEEESCTTTSCC--CCCSE
T ss_pred             hcCCCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhc----CCCCceEEEEcceecccc--hhhcE
Confidence            345567899999999999999999999999999999999999999988652    122589999999986433  36999


Q ss_pred             EEecchhhh
Q psy7837         206 IYISQAIRD  214 (299)
Q Consensus       206 v~~~~~~~~  214 (299)
                      |+++.++..
T Consensus        97 vv~nlpy~~  105 (285)
T 1zq9_A           97 CVANLPYQI  105 (285)
T ss_dssp             EEEECCGGG
T ss_pred             EEEecCccc
Confidence            999877654

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.27  E-value=8.6e-12  Score=113.50  Aligned_cols=103  Identities=17%  Similarity=0.269  Sum_probs=84.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCC-CeEEEEcCCCCCCC----CCCCe
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAE-NFEFVCADGRRGYP----DAAPY  203 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~----~~~~f  203 (299)
                      .++.+|||+|||+|.++..+++.|+ +|+++|+++.+++.+++|++.+     ... +++++.+|+.....    ...+|
T Consensus       216 ~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n-----~~~~~v~~~~~d~~~~~~~~~~~~~~f  290 (396)
T 2as0_A          216 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLN-----GVEDRMKFIVGSAFEEMEKLQKKGEKF  290 (396)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT-----TCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred             hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc-----CCCccceEEECCHHHHHHHHHhhCCCC
Confidence            3789999999999999999999865 7999999999999999999884     343 89999999875322    23679


Q ss_pred             eEEEecchh---------------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         204 DVIYISQAI---------------RDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       204 D~v~~~~~~---------------~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      |+|+++++.               ..+...+.++|+|||.++++..+..
T Consensus       291 D~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  339 (396)
T 2as0_A          291 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH  339 (396)
T ss_dssp             EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred             CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC
Confidence            999998764               2344678999999999988876654

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.26  E-value=7.7e-12  Score=118.92  Aligned_cols=98  Identities=15%  Similarity=0.151  Sum_probs=81.7

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC--CCCCCCeeEEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG--YPDAAPYDVIY  207 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~v~  207 (299)
                      .++.+|||||||.|.++..++++|++|+|+|.++.+++.|+..+..     .+..++++.++++.+.  ....++||+|+
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~-----~~~~~~~~~~~~~~~~~~~~~~~~fD~v~  139 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEE-----NPDFAAEFRVGRIEEVIAALEEGEFDLAI  139 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT-----STTSEEEEEECCHHHHHHHCCTTSCSEEE
T ss_pred             CCCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHh-----cCCCceEEEECCHHHHhhhccCCCccEEE
Confidence            3467999999999999999999999999999999999999998876     3445899999998753  23347899999


Q ss_pred             ecchhhhHHH--------HHHHhccCCcEEEEE
Q psy7837         208 ISQAIRDIPW--------HIVDQLKLGGRMLFI  232 (299)
Q Consensus       208 ~~~~~~~~~~--------~~~~~L~~gG~lv~~  232 (299)
                      +..+++|+++        .+.+.|+++|..++.
T Consensus       140 ~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~  172 (569)
T 4azs_A          140 GLSVFHHIVHLHGIDEVKRLLSRLADVTQAVIL  172 (569)
T ss_dssp             EESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEE
T ss_pred             ECcchhcCCCHHHHHHHHHHHHHhccccceeeE
Confidence            9999999874        466678887765554

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.26  E-value=4.2e-11  Score=103.45  Aligned_cols=99  Identities=17%  Similarity=0.118  Sum_probs=80.1

Q ss_pred             CCCeEEEEcCCC---cHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC---------
Q psy7837         131 YGSKVLDIGSGS---GYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG---------  196 (299)
Q Consensus       131 ~~~~vLDiG~G~---G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---------  196 (299)
                      +..+|||||||+   |.++..+.+.  +.+|+++|+|+.+++.+++++..       ..+++++.+|+...         
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~-------~~~v~~~~~D~~~~~~~~~~~~~  149 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK-------DPNTAVFTADVRDPEYILNHPDV  149 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT-------CTTEEEEECCTTCHHHHHHSHHH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC-------CCCeEEEEeeCCCchhhhccchh
Confidence            457999999999   9887766654  68999999999999999998743       35799999998742         


Q ss_pred             --CCCCCCeeEEEecchhhhH--------HHHHHHhccCCcEEEEEecCC
Q psy7837         197 --YPDAAPYDVIYISQAIRDI--------PWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       197 --~~~~~~fD~v~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~~~  236 (299)
                        ..+..+||+|++..+++++        .+++.++|+|||+|++.....
T Consensus       150 ~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          150 RRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             HHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             hccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence              1222479999999888654        358999999999999988665

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.26  E-value=3.1e-11  Score=96.37  Aligned_cols=100  Identities=16%  Similarity=0.117  Sum_probs=78.2

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--  197 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--  197 (299)
                      +.......++.+|||+|||+|.++..+++.   +.+++++|+++ +++               ..+++++.+|+....  
T Consensus        14 ~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~---------------~~~~~~~~~d~~~~~~~   77 (180)
T 1ej0_A           14 QQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP---------------IVGVDFLQGDFRDELVM   77 (180)
T ss_dssp             HHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC---------------CTTEEEEESCTTSHHHH
T ss_pred             HHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc---------------cCcEEEEEcccccchhh
Confidence            334445678899999999999999999887   47899999998 532               257899999987643  


Q ss_pred             ------CCCCCeeEEEecchhh-----------------hHHHHHHHhccCCcEEEEEecCCCC
Q psy7837         198 ------PDAAPYDVIYISQAIR-----------------DIPWHIVDQLKLGGRMLFIKGHEDD  238 (299)
Q Consensus       198 ------~~~~~fD~v~~~~~~~-----------------~~~~~~~~~L~~gG~lv~~~~~~~~  238 (299)
                            ...++||+|+++.+++                 .+.+++.++|+|||.+++.......
T Consensus        78 ~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  141 (180)
T 1ej0_A           78 KALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG  141 (180)
T ss_dssp             HHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT
T ss_pred             hhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCc
Confidence                  3346899999977642                 4557889999999999998766543

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.26  E-value=6.2e-11  Score=103.96  Aligned_cols=106  Identities=14%  Similarity=0.060  Sum_probs=82.7

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC--CCCCeeE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP--DAAPYDV  205 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD~  205 (299)
                      .++.+|||+|||+|.++..+++.  ..+|+++|+++.+++.+++++...... ....+++++.+|+.....  ..++||+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~-~~~~~v~~~~~D~~~~~~~~~~~~fDv  172 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRS-LADPRATVRVGDGLAFVRQTPDNTYDV  172 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG-GGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcc-cCCCcEEEEECcHHHHHHhccCCceeE
Confidence            45789999999999999999987  468999999999999999987421000 235689999999875332  2478999


Q ss_pred             EEecchhh----------hHHHHHHHhccCCcEEEEEecCC
Q psy7837         206 IYISQAIR----------DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       206 v~~~~~~~----------~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      |+++....          .+.+++.++|+|||++++.....
T Consensus       173 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~  213 (304)
T 3bwc_A          173 VIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI  213 (304)
T ss_dssp             EEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred             EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc
Confidence            99987532          44578999999999999987654

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.25  E-value=2.4e-11  Score=105.06  Aligned_cols=105  Identities=17%  Similarity=0.137  Sum_probs=83.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc-C-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-CCCCCeeEEE
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM-G-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-PDAAPYDVIY  207 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~-~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~  207 (299)
                      .+.+|||+|||+|.++..+++. + .+|+++|+++.+++.+++++...... ....+++++.+|+.... ...++||+|+
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~-~~~~rv~v~~~D~~~~l~~~~~~fD~Ii  153 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGK-LDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTT-TTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccc-cCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence            5789999999999999999987 4 68999999999999999987541000 12468999999987532 1236799999


Q ss_pred             ecchh----------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         208 ISQAI----------RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       208 ~~~~~----------~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ++...          ..+.+.+.++|+|||++++...++
T Consensus       154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~  192 (275)
T 1iy9_A          154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNP  192 (275)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCc
Confidence            98754          356789999999999999987553

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.25  E-value=8.2e-11  Score=105.75  Aligned_cols=100  Identities=13%  Similarity=0.106  Sum_probs=82.4

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCCCCeeE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDAAPYDV  205 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~  205 (299)
                      .+..+|||||||+|.++..+++.  +.+++++|+ +.+++.++++++..    +...+++++.+|+....  .+ ++||+
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~----~~~~~v~~~~~d~~~~~~~~p-~~~D~  251 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGL----SGSERIHGHGANLLDRDVPFP-TGFDA  251 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTC----TTGGGEEEEECCCCSSSCCCC-CCCSE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhc----CcccceEEEEccccccCCCCC-CCcCE
Confidence            45789999999999999999885  678999999 99999999998763    23468999999998742  23 67999


Q ss_pred             EEecchhhh--------HHHHHHHhccCCcEEEEEecC
Q psy7837         206 IYISQAIRD--------IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       206 v~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      |++..++++        +.+++.+.|+|||++++....
T Consensus       252 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  289 (363)
T 3dp7_A          252 VWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETL  289 (363)
T ss_dssp             EEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             EEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeec
Confidence            999888763        346789999999999997643

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.25  E-value=6.4e-11  Score=106.87  Aligned_cols=100  Identities=16%  Similarity=0.125  Sum_probs=82.0

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC--CCCeeE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD--AAPYDV  205 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~  205 (299)
                      .++.+|||+| |+|.++..+++.+  .+|+++|+++.+++.++++++.+     +..+++++.+|+....+.  .++||+
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~-----g~~~v~~~~~D~~~~l~~~~~~~fD~  244 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEI-----GYEDIEIFTFDLRKPLPDYALHKFDT  244 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHH-----TCCCEEEECCCTTSCCCTTTSSCBSE
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCEEEEEChhhhhchhhccCCccE
Confidence            4688999999 9999999999886  48999999999999999999873     344899999999874332  358999


Q ss_pred             EEecchhh-----hHHHHHHHhccCCc-EEEEEecC
Q psy7837         206 IYISQAIR-----DIPWHIVDQLKLGG-RMLFIKGH  235 (299)
Q Consensus       206 v~~~~~~~-----~~~~~~~~~L~~gG-~lv~~~~~  235 (299)
                      |+++.++.     .+.+++.++|+||| .+++.+..
T Consensus       245 Vi~~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          245 FITDPPETLEAIRAFVGRGIATLKGPRCAGYFGITR  280 (373)
T ss_dssp             EEECCCSSHHHHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred             EEECCCCchHHHHHHHHHHHHHcccCCeEEEEEEec
Confidence            99997753     35578999999999 44666654

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.25  E-value=1.1e-10  Score=103.49  Aligned_cols=100  Identities=19%  Similarity=0.233  Sum_probs=82.5

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      ...+ .+|||+|||+|.++..+++.  +.+++++|+ +.+++.+++++...    ....+++++.+|+....+  .+||+
T Consensus       165 ~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~----~~~~~v~~~~~d~~~~~~--~~~D~  236 (334)
T 2ip2_A          165 DFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSL----LAGERVSLVGGDMLQEVP--SNGDI  236 (334)
T ss_dssp             CCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHH----HHTTSEEEEESCTTTCCC--SSCSE
T ss_pred             CCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhc----CCCCcEEEecCCCCCCCC--CCCCE
Confidence            3445 89999999999999999876  678999999 99999999987652    334689999999987433  57999


Q ss_pred             EEecchhh--------hHHHHHHHhccCCcEEEEEecC
Q psy7837         206 IYISQAIR--------DIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       206 v~~~~~~~--------~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      |++..+++        .+.+++.+.|+|||++++....
T Consensus       237 v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  274 (334)
T 2ip2_A          237 YLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERT  274 (334)
T ss_dssp             EEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             EEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            99999886        3446889999999999998643

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.25  E-value=8.6e-11  Score=105.86  Aligned_cols=100  Identities=25%  Similarity=0.305  Sum_probs=82.9

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      ...++.+|||+|||+|.++..+++.  +.+++++|+ +.+++.+++++...    +...+++++.+|+....+.  .||+
T Consensus       179 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~----~~~~~v~~~~~d~~~~~~~--~~D~  251 (374)
T 1qzz_A          179 DWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADA----GLADRVTVAEGDFFKPLPV--TADV  251 (374)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT----TCTTTEEEEECCTTSCCSC--CEEE
T ss_pred             CCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhc----CCCCceEEEeCCCCCcCCC--CCCE
Confidence            3467889999999999999999887  568999999 99999999998763    2345899999998764432  4999


Q ss_pred             EEecchhhh--------HHHHHHHhccCCcEEEEEec
Q psy7837         206 IYISQAIRD--------IPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       206 v~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~  234 (299)
                      |++..++++        +.+++.++|+|||++++...
T Consensus       252 v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          252 VLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            999988753        44678999999999998765

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.24  E-value=7.3e-11  Score=103.42  Aligned_cols=105  Identities=18%  Similarity=0.102  Sum_probs=82.0

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-CCCCCeeEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-PDAAPYDVI  206 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v  206 (299)
                      ..+.+|||||||+|.++..+++..  .+|+++|+++.+++.+++++...... ....+++++.+|+.... ...++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~-~~~~rv~v~~~Da~~~l~~~~~~fD~I  172 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIG-YSSSKLTLHVGDGFEFMKQNQDAFDVI  172 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG-GGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcc-cCCCcEEEEECcHHHHHhhCCCCceEE
Confidence            456899999999999999999874  68999999999999999987541000 12568999999986421 124679999


Q ss_pred             Eecchh----------hhHHHHHHHhccCCcEEEEEecC
Q psy7837         207 YISQAI----------RDIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       207 ~~~~~~----------~~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      +++...          ..+.+++.++|+|||++++....
T Consensus       173 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  211 (304)
T 2o07_A          173 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  211 (304)
T ss_dssp             EEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence            997754          23567899999999999998744

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.24  E-value=1.2e-11  Score=107.41  Aligned_cols=104  Identities=18%  Similarity=0.142  Sum_probs=81.5

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcC-CeEEEEeCChHHHHHHHHHHHhcCCccc-------CCCCeEEEEcCCCCCCCCCC
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMG-AKVYAIEHVKNLCKRAMKNIRRGAPAIA-------LAENFEFVCADGRRGYPDAA  201 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~-------~~~~v~~~~~d~~~~~~~~~  201 (299)
                      ..+.+|||+|||+|.++..+++.+ .+|+++|+++.+++.+++++ ..+.. .       ...+++++.+|+.......+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~-l~~~~~~~~~~~v~~~~~D~~~~l~~~~  151 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNG-LLEAMLNGKHEKAKLTIGDGFEFIKNNR  151 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTT-HHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccc-cccccccCCCCcEEEEECchHHHhcccC
Confidence            456899999999999999999884 57999999999999999987 31000 1       24689999999764221146


Q ss_pred             CeeEEEecchh----------hhHHHHHHHhccCCcEEEEEecC
Q psy7837         202 PYDVIYISQAI----------RDIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       202 ~fD~v~~~~~~----------~~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      +||+|+++...          ..+.+.+.++|+|||++++....
T Consensus       152 ~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~  195 (281)
T 1mjf_A          152 GFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS  195 (281)
T ss_dssp             CEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            79999998763          34567899999999999998654

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.24  E-value=1.8e-12  Score=118.73  Aligned_cols=105  Identities=15%  Similarity=0.127  Sum_probs=77.5

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCe-EEEEcCCCCCCCCCC
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENF-EFVCADGRRGYPDAA  201 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~  201 (299)
                      +.....+.++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.++++-        ..... .+...+........+
T Consensus        99 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~~--------~~~~~~~~~~~~~~~l~~~~~  170 (416)
T 4e2x_A           99 FLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKG--------IRVRTDFFEKATADDVRRTEG  170 (416)
T ss_dssp             HHHTTTCSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTTT--------CCEECSCCSHHHHHHHHHHHC
T ss_pred             HHHHhCCCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHcC--------CCcceeeechhhHhhcccCCC
Confidence            333445568899999999999999999999999999999999999988651        11011 111112111112237


Q ss_pred             CeeEEEecchhhhH------HHHHHHhccCCcEEEEEecC
Q psy7837         202 PYDVIYISQAIRDI------PWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       202 ~fD~v~~~~~~~~~------~~~~~~~L~~gG~lv~~~~~  235 (299)
                      +||+|++..+++++      .+++.++|||||++++..+.
T Consensus       171 ~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  210 (416)
T 4e2x_A          171 PANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPY  210 (416)
T ss_dssp             CEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            89999999998765      36899999999999998764

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.23  E-value=5.8e-11  Score=105.32  Aligned_cols=101  Identities=17%  Similarity=0.279  Sum_probs=83.0

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      .++.+|||+|||+|.++..+++.  +.+++++|++ .+++.+++++...    +...+++++.+|+.....+ ..||+|+
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~----~~~~~v~~~~~d~~~~~~~-~~~D~v~  237 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQ----GVASRYHTIAGSAFEVDYG-NDYDLVL  237 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHH----TCGGGEEEEESCTTTSCCC-SCEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhc----CCCcceEEEecccccCCCC-CCCcEEE
Confidence            67789999999999999999887  6789999999 9999999998763    2345799999999864333 3499999


Q ss_pred             ecchhhhH--------HHHHHHhccCCcEEEEEecCC
Q psy7837         208 ISQAIRDI--------PWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       208 ~~~~~~~~--------~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +..+++++        .+++.++|+|||++++.....
T Consensus       238 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~  274 (335)
T 2r3s_A          238 LPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIP  274 (335)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             EcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecC
Confidence            98887644        357899999999999876543

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.23  E-value=2.3e-11  Score=106.48  Aligned_cols=99  Identities=18%  Similarity=0.142  Sum_probs=81.4

Q ss_pred             CeEEEEcCCCcHHHHHHHH-c-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCCCCeeEEEe
Q psy7837         133 SKVLDIGSGSGYLSALFAY-M-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDAAPYDVIYI  208 (299)
Q Consensus       133 ~~vLDiG~G~G~~~~~la~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~  208 (299)
                      .+|||||||+|.++..+++ . +.+++++|+++.+++.+++++..     ....+++++++|+....  ...++||+|++
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~-----~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~  165 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDI-----PRAPRVKIRVDDARMVAESFTPASRDVIIR  165 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCC-----CCTTTEEEEESCHHHHHHTCCTTCEEEEEE
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccc-----cCCCceEEEECcHHHHHhhccCCCCCEEEE
Confidence            4999999999999999998 3 67899999999999999999755     34568999999987532  22468999999


Q ss_pred             cchh----------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         209 SQAI----------RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       209 ~~~~----------~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +...          ..+.+.+.++|+|||++++.....
T Consensus       166 D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~  203 (317)
T 3gjy_A          166 DVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDH  203 (317)
T ss_dssp             CCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEEC
T ss_pred             CCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCC
Confidence            7532          245678999999999999988643

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.23  E-value=6.2e-11  Score=103.13  Aligned_cols=95  Identities=23%  Similarity=0.181  Sum_probs=76.3

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCC
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAP  202 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  202 (299)
                      +.......++.+|||||||+|.++..+++.+.+|+++|+++.+++.+++++..       ..+++++++|+.....+..+
T Consensus        42 Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~-------~~~v~vi~gD~l~~~~~~~~  114 (295)
T 3gru_A           42 AVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKEL-------YNNIEIIWGDALKVDLNKLD  114 (295)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHH-------CSSEEEEESCTTTSCGGGSC
T ss_pred             HHHhcCCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhcc-------CCCeEEEECchhhCCcccCC
Confidence            33344567789999999999999999999999999999999999999998764       35899999999875444467


Q ss_pred             eeEEEecchhhhHHHHHHHhcc
Q psy7837         203 YDVIYISQAIRDIPWHIVDQLK  224 (299)
Q Consensus       203 fD~v~~~~~~~~~~~~~~~~L~  224 (299)
                      ||.|+++.++....+-+.++|+
T Consensus       115 fD~Iv~NlPy~is~pil~~lL~  136 (295)
T 3gru_A          115 FNKVVANLPYQISSPITFKLIK  136 (295)
T ss_dssp             CSEEEEECCGGGHHHHHHHHHH
T ss_pred             ccEEEEeCcccccHHHHHHHHh
Confidence            9999999887655444444443

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.23  E-value=3.4e-11  Score=103.76  Aligned_cols=105  Identities=22%  Similarity=0.271  Sum_probs=76.5

Q ss_pred             CCCeEEEEcCCCcH----HHHHHHHc------CCeEEEEeCChHHHHHHHHHHHhcC-----------------C---c-
Q psy7837         131 YGSKVLDIGSGSGY----LSALFAYM------GAKVYAIEHVKNLCKRAMKNIRRGA-----------------P---A-  179 (299)
Q Consensus       131 ~~~~vLDiG~G~G~----~~~~la~~------~~~v~~~D~~~~~~~~a~~~~~~~~-----------------~---~-  179 (299)
                      ++.+|||+|||+|.    +++.++..      +.+|+|+|+|+.+++.|++++-...                 .   . 
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45799999999998    55555554      3589999999999999998751100                 0   0 


Q ss_pred             -c----cCCCCeEEEEcCCCCC-CCCCCCeeEEEecchhh--------hHHHHHHHhccCCcEEEEEecC
Q psy7837         180 -I----ALAENFEFVCADGRRG-YPDAAPYDVIYISQAIR--------DIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       180 -~----~~~~~v~~~~~d~~~~-~~~~~~fD~v~~~~~~~--------~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                       .    ....++.|.++|.... ++..++||+|+|.+++.        .+.+++.+.|+|||.|++....
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~sE  254 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSE  254 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTTC
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEecc
Confidence             0    0013799999999874 23246899999999874        3446889999999999985543

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.23  E-value=3.1e-11  Score=105.50  Aligned_cols=105  Identities=22%  Similarity=0.097  Sum_probs=80.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-CCCCCeeEEE
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-PDAAPYDVIY  207 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~  207 (299)
                      .+.+|||+|||+|.++..+++.  ..+|+++|+++.+++.+++++...+.. ....+++++.+|+.... ...++||+|+
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~-~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCG-FDDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGG-GGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccc-cCCCceEEEECcHHHHHhhCCCCceEEE
Confidence            4689999999999999999987  468999999999999999987531000 12468999999976422 1236799999


Q ss_pred             ecchhh-----------hHHHHHHHhccCCcEEEEEecCC
Q psy7837         208 ISQAIR-----------DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       208 ~~~~~~-----------~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ++....           .+.+.+.++|+|||++++...++
T Consensus       169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~  208 (296)
T 1inl_A          169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDP  208 (296)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCc
Confidence            876432           45578999999999999986553

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.22  E-value=2.5e-11  Score=117.73  Aligned_cols=105  Identities=18%  Similarity=0.267  Sum_probs=86.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHHHHHhcCCcccCC-CCeEEEEcCCCCCCC-CCCCeeEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALA-ENFEFVCADGRRGYP-DAAPYDVI  206 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~-~~~~fD~v  206 (299)
                      .++.+|||+|||+|.+++.+++.|+. |+++|+|+.+++.+++|++.+    +.. .+++++++|+..... ..++||+|
T Consensus       538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~n----gl~~~~v~~i~~D~~~~l~~~~~~fD~I  613 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLN----GLTGRAHRLIQADCLAWLREANEQFDLI  613 (703)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT----TCCSTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc----CCCccceEEEecCHHHHHHhcCCCccEE
Confidence            46899999999999999999998875 999999999999999999984    222 489999999875321 23679999


Q ss_pred             Eecchh-----------------hhHHHHHHHhccCCcEEEEEecCCCC
Q psy7837         207 YISQAI-----------------RDIPWHIVDQLKLGGRMLFIKGHEDD  238 (299)
Q Consensus       207 ~~~~~~-----------------~~~~~~~~~~L~~gG~lv~~~~~~~~  238 (299)
                      +++++.                 ..+...+.++|+|||+|++++.....
T Consensus       614 i~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~  662 (703)
T 3v97_A          614 FIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGF  662 (703)
T ss_dssp             EECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTC
T ss_pred             EECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc
Confidence            998863                 12356788999999999999887543

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.21  E-value=3.8e-11  Score=102.35  Aligned_cols=79  Identities=19%  Similarity=0.198  Sum_probs=64.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC----CCC--CCC
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG----YPD--AAP  202 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~----~~~--~~~  202 (299)
                      ++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.|+++++.+    ....+++++++|+...    ...  .++
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~~v~~~~~d~~~~~~~~~~~~~~~~  140 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQN----NLSDLIKVVKVPQKTLLMDALKEESEII  140 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT----TCTTTEEEEECCTTCSSTTTSTTCCSCC
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHc----CCCccEEEEEcchhhhhhhhhhcccCCc
Confidence            5789999999999999988876  689999999999999999999873    2334699999997642    221  257


Q ss_pred             eeEEEecchhh
Q psy7837         203 YDVIYISQAIR  213 (299)
Q Consensus       203 fD~v~~~~~~~  213 (299)
                      ||+|++++++.
T Consensus       141 fD~i~~npp~~  151 (254)
T 2h00_A          141 YDFCMCNPPFF  151 (254)
T ss_dssp             BSEEEECCCCC
T ss_pred             ccEEEECCCCc
Confidence            99999996653

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.21  E-value=2.9e-10  Score=99.68  Aligned_cols=50  Identities=16%  Similarity=0.260  Sum_probs=46.4

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +++|++|||+|||+|..|..+++.++..++|+++|+++.+++.+++++.+
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r  149 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLAR  149 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            88999999999999999999999987778999999999999998888877

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.21  E-value=1.8e-10  Score=103.35  Aligned_cols=101  Identities=17%  Similarity=0.190  Sum_probs=82.7

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      ...++.+|||+|||+|.++..+++.  +.+++++|+ +.+++.++++++..    ....+++++.+|+.....+  .+|+
T Consensus       187 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~----~~~~~v~~~~~d~~~~~~~--~~D~  259 (359)
T 1x19_A          187 KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK----GVADRMRGIAVDIYKESYP--EADA  259 (359)
T ss_dssp             CCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHT----TCTTTEEEEECCTTTSCCC--CCSE
T ss_pred             CCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhc----CCCCCEEEEeCccccCCCC--CCCE
Confidence            4567889999999999999999887  568999999 99999999998773    2345699999999875433  2499


Q ss_pred             EEecchhhhH--------HHHHHHhccCCcEEEEEecC
Q psy7837         206 IYISQAIRDI--------PWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       206 v~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~~  235 (299)
                      |++..+++++        .+++.++|+|||++++....
T Consensus       260 v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~  297 (359)
T 1x19_A          260 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMV  297 (359)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEC
T ss_pred             EEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence            9999887643        35789999999999887643

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.20  E-value=5.9e-11  Score=96.86  Aligned_cols=103  Identities=21%  Similarity=0.142  Sum_probs=75.4

Q ss_pred             HHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc-C----------CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeE
Q psy7837         119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM-G----------AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFE  187 (299)
Q Consensus       119 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~-~----------~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~  187 (299)
                      +.+.......+.++.+|||+|||+|.++..+++. +          .+|+++|+++..                ...+++
T Consensus        10 l~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----------------~~~~~~   73 (196)
T 2nyu_A           10 LLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----------------PLEGAT   73 (196)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----------------CCTTCE
T ss_pred             HHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----------------cCCCCe
Confidence            3333344445678999999999999999999887 4          689999999831                234688


Q ss_pred             EE-EcCCCCCC--------CCCCCeeEEEecchhh-----------------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837         188 FV-CADGRRGY--------PDAAPYDVIYISQAIR-----------------DIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       188 ~~-~~d~~~~~--------~~~~~fD~v~~~~~~~-----------------~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      ++ .+|+....        .+.++||+|+++...+                 .+.+++.++|+|||.+++......
T Consensus        74 ~~~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  149 (196)
T 2nyu_A           74 FLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGS  149 (196)
T ss_dssp             EECSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSG
T ss_pred             EEEeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Confidence            88 88876421        1235799999865321                 345678999999999999876543

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.20  E-value=1.6e-10  Score=104.68  Aligned_cols=115  Identities=13%  Similarity=0.041  Sum_probs=88.6

Q ss_pred             HHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcC----------------------------------------CeEEE
Q psy7837         119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMG----------------------------------------AKVYA  158 (299)
Q Consensus       119 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~----------------------------------------~~v~~  158 (299)
                      +...+..+....++..|||++||+|.+++.++..+                                        ..|++
T Consensus       189 lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G  268 (393)
T 3k0b_A          189 MAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG  268 (393)
T ss_dssp             HHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred             HHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence            34445556667788999999999999999888763                                        34999


Q ss_pred             EeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhh----------hHHHHHHHhccC--C
Q psy7837         159 IEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIR----------DIPWHIVDQLKL--G  226 (299)
Q Consensus       159 ~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~----------~~~~~~~~~L~~--g  226 (299)
                      +|+++.+++.|++|++.+    +...+++++++|+...... .+||+|++++++.          .+...+.+.|++  |
T Consensus       269 vDid~~al~~Ar~Na~~~----gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g  343 (393)
T 3k0b_A          269 GDIDARLIEIAKQNAVEA----GLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPT  343 (393)
T ss_dssp             EESCHHHHHHHHHHHHHT----TCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             EECCHHHHHHHHHHHHHc----CCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCC
Confidence            999999999999999884    3345799999999875544 5899999998852          233445555555  9


Q ss_pred             cEEEEEecCCCC
Q psy7837         227 GRMLFIKGHEDD  238 (299)
Q Consensus       227 G~lv~~~~~~~~  238 (299)
                      |.+++.++....
T Consensus       344 ~~~~iit~~~~l  355 (393)
T 3k0b_A          344 WSVYVLTSYELF  355 (393)
T ss_dssp             CEEEEEECCTTH
T ss_pred             CEEEEEECCHHH
Confidence            999998886553

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.20  E-value=9.9e-11  Score=102.38  Aligned_cols=83  Identities=19%  Similarity=0.181  Sum_probs=66.5

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      ...++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++++.     ....+++++.+|+.....  .+||+|+
T Consensus        39 ~~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~-----~~~~~v~~~~~D~~~~~~--~~~D~Vv  111 (299)
T 2h1r_A           39 KIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLY-----EGYNNLEVYEGDAIKTVF--PKFDVCT  111 (299)
T ss_dssp             CCCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHH-----TTCCCEEC----CCSSCC--CCCSEEE
T ss_pred             CCCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHH-----cCCCceEEEECchhhCCc--ccCCEEE
Confidence            456789999999999999999999999999999999999999999876     344689999999886543  4799999


Q ss_pred             ecchhhhHHH
Q psy7837         208 ISQAIRDIPW  217 (299)
Q Consensus       208 ~~~~~~~~~~  217 (299)
                      ++.+.....+
T Consensus       112 ~n~py~~~~~  121 (299)
T 2h1r_A          112 ANIPYKISSP  121 (299)
T ss_dssp             EECCGGGHHH
T ss_pred             EcCCcccccH
Confidence            9988765443

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.19  E-value=1.1e-10  Score=107.30  Aligned_cols=117  Identities=17%  Similarity=0.181  Sum_probs=87.3

Q ss_pred             CcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhccc
Q psy7837          50 SPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHL  129 (299)
Q Consensus        50 ~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~  129 (299)
                      +......+...+.  .++|++|||+|||+|..+..+++..+. ++++++|+++..++.+++++..               
T Consensus       231 qd~~s~~~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~---------------  292 (429)
T 1sqg_A          231 QDASAQGCMTWLA--PQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKR---------------  292 (429)
T ss_dssp             CCHHHHTHHHHHC--CCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHH---------------
T ss_pred             eCHHHHHHHHHcC--CCCcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHH---------------
Confidence            3333334444444  789999999999999999999988753 7888888888888888877766               


Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCCCCeeEEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDAAPYDVIY  207 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~  207 (299)
                                                                         .+. ++.++++|+....  ...++||+|+
T Consensus       293 ---------------------------------------------------~g~-~~~~~~~D~~~~~~~~~~~~fD~Vl  320 (429)
T 1sqg_A          293 ---------------------------------------------------LGM-KATVKQGDGRYPSQWCGEQQFDRIL  320 (429)
T ss_dssp             ---------------------------------------------------TTC-CCEEEECCTTCTHHHHTTCCEEEEE
T ss_pred             ---------------------------------------------------cCC-CeEEEeCchhhchhhcccCCCCEEE
Confidence                                                               222 4788999987643  2336799999


Q ss_pred             ecchh----------------------------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         208 ISQAI----------------------------RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       208 ~~~~~----------------------------~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ++++.                            ..+.+++.++|||||++++++.+.
T Consensus       321 ~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~  377 (429)
T 1sqg_A          321 LDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV  377 (429)
T ss_dssp             EECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             EeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            87643                            134567889999999999987544

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.18  E-value=2.3e-10  Score=102.55  Aligned_cols=101  Identities=23%  Similarity=0.294  Sum_probs=83.0

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      ...++.+|||+|||+|.++..+++.  +.+++++|+ +.+++.+++++...    ....+++++.+|+....+.  .||+
T Consensus       180 ~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~----~~~~~v~~~~~d~~~~~~~--~~D~  252 (360)
T 1tw3_A          180 DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDE----GLSDRVDVVEGDFFEPLPR--KADA  252 (360)
T ss_dssp             CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHT----TCTTTEEEEECCTTSCCSS--CEEE
T ss_pred             CCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhc----CCCCceEEEeCCCCCCCCC--CccE
Confidence            4567889999999999999999877  467999999 99999999998773    2345899999998764433  4999


Q ss_pred             EEecchhhh--------HHHHHHHhccCCcEEEEEecC
Q psy7837         206 IYISQAIRD--------IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       206 v~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      |++..++++        +.+++.++|+|||++++....
T Consensus       253 v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          253 IILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            999888753        446789999999999988654

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.18  E-value=3.7e-11  Score=105.70  Aligned_cols=106  Identities=20%  Similarity=0.110  Sum_probs=81.7

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-CCCCCeeEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-PDAAPYDVI  206 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v  206 (299)
                      ..+.+|||||||+|..+..+++.  ..+|+++|+++.+++.+++++...... ....+++++.+|+.... ...++||+|
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~-~~~~rv~~~~~D~~~~l~~~~~~fD~I  185 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCG-FSHPKLDLFCGDGFEFLKNHKNEFDVI  185 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGG-GGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccc-cCCCCEEEEEChHHHHHHhcCCCceEE
Confidence            34689999999999999999987  468999999999999999987641000 12468999999987532 134679999


Q ss_pred             Eecchh----------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         207 YISQAI----------RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       207 ~~~~~~----------~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +++...          ..+.+.+.++|+|||++++.....
T Consensus       186 i~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~  225 (314)
T 2b2c_A          186 ITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESV  225 (314)
T ss_dssp             EECCC-------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred             EEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCc
Confidence            988742          345578999999999999987543

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.18  E-value=4.3e-11  Score=103.91  Aligned_cols=106  Identities=14%  Similarity=0.085  Sum_probs=82.9

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCeeEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYDVI  206 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v  206 (299)
                      .++.+|||+|||+|..+..+++.  +.+++++|+++.+++.+++++...+.. ....+++++.+|+..... ..++||+|
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~-~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCG-YEDKRVNVFIEDASKFLENVTNTYDVI  155 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGG-GGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccc-cCCCcEEEEECChHHHHHhCCCCceEE
Confidence            35689999999999999999987  468999999999999999987642100 124689999999875321 14679999


Q ss_pred             Eecchh----------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         207 YISQAI----------RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       207 ~~~~~~----------~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +++...          ..+.+.+.++|+|||++++...+.
T Consensus       156 i~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~  195 (283)
T 2i7c_A          156 IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESL  195 (283)
T ss_dssp             EEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             EEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCc
Confidence            996532          355678999999999999987643

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.17  E-value=1.2e-10  Score=104.00  Aligned_cols=102  Identities=18%  Similarity=0.189  Sum_probs=82.8

Q ss_pred             cCC-CCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCee
Q psy7837         129 LVY-GSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYD  204 (299)
Q Consensus       129 ~~~-~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD  204 (299)
                      ..+ +.+|||+|||+|.++..+++.  +.+++++|+ +.+++.+++++...    ....+++++.+|+..... ..++||
T Consensus       176 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~----~~~~~v~~~~~d~~~~~~~~~~~~D  250 (352)
T 3mcz_A          176 VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAH----DLGGRVEFFEKNLLDARNFEGGAAD  250 (352)
T ss_dssp             GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHT----TCGGGEEEEECCTTCGGGGTTCCEE
T ss_pred             CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhc----CCCCceEEEeCCcccCcccCCCCcc
Confidence            445 889999999999999999887  578999999 88999999988763    234579999999886531 225699


Q ss_pred             EEEecchhhhH--------HHHHHHhccCCcEEEEEecC
Q psy7837         205 VIYISQAIRDI--------PWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       205 ~v~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~~  235 (299)
                      +|++..+++++        .+++.++|+|||++++....
T Consensus       251 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  289 (352)
T 3mcz_A          251 VVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMT  289 (352)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             EEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            99999888643        35789999999999997643

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.17  E-value=4.1e-11  Score=102.76  Aligned_cols=102  Identities=13%  Similarity=0.017  Sum_probs=81.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQ  210 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~  210 (299)
                      .+.+|||||||+|.++..+++.+.+|+++|+++.+++.+++++...... ....+++++.+|+....   ++||+|+++.
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~-~~~~rv~~~~~D~~~~~---~~fD~Ii~d~  147 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEV-KNNKNFTHAKQLLDLDI---KKYDLIFCLQ  147 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHH-HTCTTEEEESSGGGSCC---CCEEEEEESS
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccc-cCCCeEEEEechHHHHH---hhCCEEEECC
Confidence            4689999999999999988877767999999999999999876431000 12468999999988754   6799999986


Q ss_pred             hhh-hHHHHHHHhccCCcEEEEEecCC
Q psy7837         211 AIR-DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       211 ~~~-~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      .-. ...+.+.++|+|||++++.....
T Consensus       148 ~dp~~~~~~~~~~L~pgG~lv~~~~~~  174 (262)
T 2cmg_A          148 EPDIHRIDGLKRMLKEDGVFISVAKHP  174 (262)
T ss_dssp             CCCHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred             CChHHHHHHHHHhcCCCcEEEEEcCCc
Confidence            432 35789999999999999986554

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.17  E-value=3.2e-10  Score=102.34  Aligned_cols=116  Identities=12%  Similarity=0.067  Sum_probs=89.8

Q ss_pred             HHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcC----------------------------------------CeEE
Q psy7837         118 TYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMG----------------------------------------AKVY  157 (299)
Q Consensus       118 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~----------------------------------------~~v~  157 (299)
                      .+...+..+....++..++|.+||+|.+.+.++..+                                        .+++
T Consensus       181 ~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~  260 (384)
T 3ldg_A          181 NMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS  260 (384)
T ss_dssp             HHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred             HHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE
Confidence            344445556667788999999999999999888653                                        3499


Q ss_pred             EEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhh----------hHHHHHHHhccC--
Q psy7837         158 AIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIR----------DIPWHIVDQLKL--  225 (299)
Q Consensus       158 ~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~----------~~~~~~~~~L~~--  225 (299)
                      ++|+++.+++.|++|++.+    +...+++++++|+.+.... .+||+|++|+++.          .+...+.+.||+  
T Consensus       261 GvDid~~al~~Ar~Na~~~----gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~  335 (384)
T 3ldg_A          261 GFDFDGRMVEIARKNAREV----GLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLK  335 (384)
T ss_dssp             EEESCHHHHHHHHHHHHHT----TCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCT
T ss_pred             EEECCHHHHHHHHHHHHHc----CCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCC
Confidence            9999999999999999884    3445799999999875544 5899999998852          233455566665  


Q ss_pred             CcEEEEEecCCCC
Q psy7837         226 GGRMLFIKGHEDD  238 (299)
Q Consensus       226 gG~lv~~~~~~~~  238 (299)
                      ||.+++.++....
T Consensus       336 g~~~~iit~~~~l  348 (384)
T 3ldg_A          336 TWSQFILTNDTDF  348 (384)
T ss_dssp             TSEEEEEESCTTH
T ss_pred             CcEEEEEECCHHH
Confidence            9999999886653

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.17  E-value=5.8e-11  Score=104.85  Aligned_cols=106  Identities=14%  Similarity=0.084  Sum_probs=82.7

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-CCCCCeeEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-PDAAPYDVI  206 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v  206 (299)
                      .++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.+++++...... ....+++++.+|+.... ...++||+|
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~-~~~~~v~~~~~D~~~~l~~~~~~fDvI  193 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCG-YEDKRVNVFIEDASKFLENVTNTYDVI  193 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGG-GGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccc-cCCCcEEEEEccHHHHHhhcCCCceEE
Confidence            35689999999999999999987  478999999999999999987641000 12468999999986532 123679999


Q ss_pred             Eecchh----------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         207 YISQAI----------RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       207 ~~~~~~----------~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +++...          ..+.+.+.+.|+|||++++...+.
T Consensus       194 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~  233 (321)
T 2pt6_A          194 IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESL  233 (321)
T ss_dssp             EEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred             EECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCc
Confidence            987631          355678999999999999987544

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.16  E-value=4.9e-11  Score=105.09  Aligned_cols=106  Identities=19%  Similarity=0.145  Sum_probs=81.9

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-CCCCCeeEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-PDAAPYDVI  206 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v  206 (299)
                      ..+.+|||||||+|.++..+++.  +.+|+++|+++.+++.+++++...+.......+++++.+|+.... ...++||+|
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            35689999999999999999987  568999999999999999987531000001468999999987532 124679999


Q ss_pred             Eecchhh-------------hHHHHHHHhccCCcEEEEEecC
Q psy7837         207 YISQAIR-------------DIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       207 ~~~~~~~-------------~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      +++...+             .+.+.+.++|+|||++++....
T Consensus       156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  197 (314)
T 1uir_A          156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM  197 (314)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccC
Confidence            9986542             3457899999999999998643

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.16  E-value=3.4e-10  Score=92.63  Aligned_cols=100  Identities=15%  Similarity=0.133  Sum_probs=78.5

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY  144 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~  144 (299)
                      +++..+|||+||  ||.|.++++..  +|+++++|.++...+.+++++.+.                             
T Consensus        28 l~~a~~VLEiGt--GySTl~lA~~~--~g~VvtvE~d~~~~~~ar~~l~~~-----------------------------   74 (202)
T 3cvo_A           28 YEEAEVILEYGS--GGSTVVAAELP--GKHVTSVESDRAWARMMKAWLAAN-----------------------------   74 (202)
T ss_dssp             HHHCSEEEEESC--SHHHHHHHTST--TCEEEEEESCHHHHHHHHHHHHHS-----------------------------
T ss_pred             hhCCCEEEEECc--hHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHc-----------------------------
Confidence            567889999998  68999999843  689999999999999999999872                             


Q ss_pred             HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccC--CCCeEEEEcCCCCC------------------------CC
Q psy7837         145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIAL--AENFEFVCADGRRG------------------------YP  198 (299)
Q Consensus       145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~--~~~v~~~~~d~~~~------------------------~~  198 (299)
                                                          +.  ..+++++.+|+...                        ..
T Consensus        75 ------------------------------------g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~  118 (202)
T 3cvo_A           75 ------------------------------------PPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTE  118 (202)
T ss_dssp             ------------------------------------CCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCT
T ss_pred             ------------------------------------CCCCCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhccc
Confidence                                                33  56899999986532                        11


Q ss_pred             CCCCeeEEEecchhh-hHHHHHHHhccCCcEEEEEe
Q psy7837         199 DAAPYDVIYISQAIR-DIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       199 ~~~~fD~v~~~~~~~-~~~~~~~~~L~~gG~lv~~~  233 (299)
                      ..++||+|++++... .....+.++|++||++++..
T Consensus       119 ~~~~fDlIfIDg~k~~~~~~~~l~~l~~GG~Iv~DN  154 (202)
T 3cvo_A          119 GFRHPDVVLVDGRFRVGCALATAFSITRPVTLLFDD  154 (202)
T ss_dssp             TCCCCSEEEECSSSHHHHHHHHHHHCSSCEEEEETT
T ss_pred             cCCCCCEEEEeCCCchhHHHHHHHhcCCCeEEEEeC
Confidence            236899999999743 33445779999999997754

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.16  E-value=5.4e-10  Score=93.24  Aligned_cols=96  Identities=18%  Similarity=0.089  Sum_probs=79.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS  209 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  209 (299)
                      .+..+|||+|||+|.++..+. .+..|+++|+++.+++.+++++..      ...+..+.++|.....++ ++||+|++.
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~------~g~~~~~~v~D~~~~~~~-~~~DvvLll  175 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFARE------KDWDFTFALQDVLCAPPA-EAGDLALIF  175 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHH------TTCEEEEEECCTTTSCCC-CBCSEEEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHh------cCCCceEEEeecccCCCC-CCcchHHHH
Confidence            568899999999999999988 677899999999999999999877      237889999999876655 589999999


Q ss_pred             chhhhHHH-------HHHHhccCCcEEEEEec
Q psy7837         210 QAIRDIPW-------HIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       210 ~~~~~~~~-------~~~~~L~~gG~lv~~~~  234 (299)
                      -.++.+.+       ++...|+++|.+ ++++
T Consensus       176 k~lh~LE~q~~~~~~~ll~aL~~~~vv-VsfP  206 (253)
T 3frh_A          176 KLLPLLEREQAGSAMALLQSLNTPRMA-VSFP  206 (253)
T ss_dssp             SCHHHHHHHSTTHHHHHHHHCBCSEEE-EEEE
T ss_pred             HHHHHhhhhchhhHHHHHHHhcCCCEE-EEcC
Confidence            88776653       678888888654 4444

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.14  E-value=2.9e-10  Score=102.83  Aligned_cols=115  Identities=17%  Similarity=0.164  Sum_probs=88.8

Q ss_pred             HHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcC----------------------------------------CeEEE
Q psy7837         119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMG----------------------------------------AKVYA  158 (299)
Q Consensus       119 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~----------------------------------------~~v~~  158 (299)
                      +...+..+....++..|||++||+|.+++.++..+                                        ..|+|
T Consensus       183 lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G  262 (385)
T 3ldu_A          183 LAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG  262 (385)
T ss_dssp             HHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred             HHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence            33445556667788999999999999999987763                                        46999


Q ss_pred             EeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhh----------hHHHHHHHhccC--C
Q psy7837         159 IEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIR----------DIPWHIVDQLKL--G  226 (299)
Q Consensus       159 ~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~----------~~~~~~~~~L~~--g  226 (299)
                      +|+++.+++.|++|++.+    +...++++.++|+.+...+ .+||+|++++++.          .+...+.+.|++  |
T Consensus       263 vDid~~ai~~Ar~Na~~~----gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g  337 (385)
T 3ldu_A          263 YDIDEESIDIARENAEIA----GVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKN  337 (385)
T ss_dssp             EESCHHHHHHHHHHHHHH----TCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBS
T ss_pred             EECCHHHHHHHHHHHHHc----CCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCC
Confidence            999999999999999884    2335899999999875543 5799999999862          222345556665  8


Q ss_pred             cEEEEEecCCCC
Q psy7837         227 GRMLFIKGHEDD  238 (299)
Q Consensus       227 G~lv~~~~~~~~  238 (299)
                      +.+++.++....
T Consensus       338 ~~~~iit~~~~l  349 (385)
T 3ldu_A          338 WSYYLITSYEDF  349 (385)
T ss_dssp             CEEEEEESCTTH
T ss_pred             CEEEEEECCHHH
Confidence            999998876543

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.13  E-value=1.5e-09  Score=89.39  Aligned_cols=93  Identities=19%  Similarity=0.224  Sum_probs=74.6

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      ..++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++++.+     .. +++++++|+....   .+||+|+
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----~~-~~~~~~~d~~~~~---~~~D~v~  117 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEF-----KG-KFKVFIGDVSEFN---SRVDIVI  117 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGG-----TT-SEEEEESCGGGCC---CCCSEEE
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHc-----CC-CEEEEECchHHcC---CCCCEEE
Confidence            45688999999999999999999875 6999999999999999998773     33 8999999988742   4799999


Q ss_pred             ecchhh--------hHHHHHHHhccCCcEEEEEe
Q psy7837         208 ISQAIR--------DIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       208 ~~~~~~--------~~~~~~~~~L~~gG~lv~~~  233 (299)
                      ++.++.        .+.+.+.+.+  |+ +++..
T Consensus       118 ~~~p~~~~~~~~~~~~l~~~~~~l--~~-~~~~~  148 (207)
T 1wy7_A          118 MNPPFGSQRKHADRPFLLKAFEIS--DV-VYSIH  148 (207)
T ss_dssp             ECCCCSSSSTTTTHHHHHHHHHHC--SE-EEEEE
T ss_pred             EcCCCccccCCchHHHHHHHHHhc--Cc-EEEEE
Confidence            998753        3445677777  44 44444

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.13  E-value=7.8e-10  Score=90.64  Aligned_cols=91  Identities=21%  Similarity=0.230  Sum_probs=70.5

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      ..++.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++        .  +++++++|+....   ++||+|+
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~--------~--~~~~~~~d~~~~~---~~~D~v~  115 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC--------G--GVNFMVADVSEIS---GKYDTWI  115 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC--------T--TSEEEECCGGGCC---CCEEEEE
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhc--------C--CCEEEECcHHHCC---CCeeEEE
Confidence            45688999999999999999998876 6999999999999999874        1  7899999988742   6799999


Q ss_pred             ecchhhhHH--------HHHHHhccCCcEEEEEecC
Q psy7837         208 ISQAIRDIP--------WHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       208 ~~~~~~~~~--------~~~~~~L~~gG~lv~~~~~  235 (299)
                      ++.++++..        +++.+.+   |.+++...+
T Consensus       116 ~~~p~~~~~~~~~~~~l~~~~~~~---g~~~~~~~~  148 (200)
T 1ne2_A          116 MNPPFGSVVKHSDRAFIDKAFETS---MWIYSIGNA  148 (200)
T ss_dssp             ECCCC-------CHHHHHHHHHHE---EEEEEEEEG
T ss_pred             ECCCchhccCchhHHHHHHHHHhc---CcEEEEEcC
Confidence            999865443        4556665   555555543

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.12  E-value=5e-11  Score=102.34  Aligned_cols=104  Identities=16%  Similarity=0.012  Sum_probs=74.0

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEE--EcCCCCCCCCCCCee
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV--CADGRRGYPDAAPYD  204 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~--~~d~~~~~~~~~~fD  204 (299)
                      ..+.++.+|||+|||+|.++..+++. .+|+++|+++ ++..++++.... .  ....++.++  ++|+....  .++||
T Consensus        70 ~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~a~~~~~~~-~--~~~~~v~~~~~~~D~~~l~--~~~fD  142 (265)
T 2oxt_A           70 GYVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVGGHEVPRIT-E--SYGWNIVKFKSRVDIHTLP--VERTD  142 (265)
T ss_dssp             TSCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCSSCCCCCCC-C--BTTGGGEEEECSCCTTTSC--CCCCS
T ss_pred             CCCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhhhhhhhhhh-h--ccCCCeEEEecccCHhHCC--CCCCc
Confidence            45578899999999999999999988 7899999998 432221110000 0  011278999  89988743  46899


Q ss_pred             EEEecchh-------h-----hHHHHHHHhccCCc--EEEEEecCCC
Q psy7837         205 VIYISQAI-------R-----DIPWHIVDQLKLGG--RMLFIKGHED  237 (299)
Q Consensus       205 ~v~~~~~~-------~-----~~~~~~~~~L~~gG--~lv~~~~~~~  237 (299)
                      +|+++...       .     .+.+.+.++|+|||  .+++.+..+.
T Consensus       143 ~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~  189 (265)
T 2oxt_A          143 VIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPY  189 (265)
T ss_dssp             EEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTT
T ss_pred             EEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCC
Confidence            99998651       0     14467889999999  9999776533

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.11  E-value=5.6e-11  Score=102.64  Aligned_cols=104  Identities=15%  Similarity=0.063  Sum_probs=74.2

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEE--EcCCCCCCCCCCCee
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV--CADGRRGYPDAAPYD  204 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~--~~d~~~~~~~~~~fD  204 (299)
                      ..+.++.+|||+|||+|.++..+++. .+|+++|+++ ++..++++.....   ....++.++  ++|+....  .++||
T Consensus        78 ~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~a~~~~~~~~---~~~~~v~~~~~~~D~~~l~--~~~fD  150 (276)
T 2wa2_A           78 GGVELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTSGHEKPRLVE---TFGWNLITFKSKVDVTKME--PFQAD  150 (276)
T ss_dssp             TSCCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCTTSCCCCCCC---CTTGGGEEEECSCCGGGCC--CCCCS
T ss_pred             CCCCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhhhhhchhhhh---hcCCCeEEEeccCcHhhCC--CCCcC
Confidence            44568899999999999999999998 7899999998 5332221100000   011278999  89987743  46899


Q ss_pred             EEEecchh-------h-----hHHHHHHHhccCCc--EEEEEecCCC
Q psy7837         205 VIYISQAI-------R-----DIPWHIVDQLKLGG--RMLFIKGHED  237 (299)
Q Consensus       205 ~v~~~~~~-------~-----~~~~~~~~~L~~gG--~lv~~~~~~~  237 (299)
                      +|+++.+.       .     .+.+.+.++|+|||  .+++.+..+.
T Consensus       151 ~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~  197 (276)
T 2wa2_A          151 TVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNPY  197 (276)
T ss_dssp             EEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCC
T ss_pred             EEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCC
Confidence            99998651       0     13567889999999  9998766543

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.11  E-value=5.2e-10  Score=94.23  Aligned_cols=95  Identities=15%  Similarity=0.071  Sum_probs=80.0

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      .+..+|||||||+|.++..++..  ..+|+++|+++.+++.+++++..+     + .+..+.+.|.....++ ++||+++
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~-----g-~~~~~~v~D~~~~~p~-~~~DvaL  203 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRL-----N-VPHRTNVADLLEDRLD-EPADVTL  203 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHT-----T-CCEEEEECCTTTSCCC-SCCSEEE
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc-----C-CCceEEEeeecccCCC-CCcchHH
Confidence            55789999999999999998876  568999999999999999999872     3 4488999998876554 6799999


Q ss_pred             ecchhhhHHH-------HHHHhccCCcEEEE
Q psy7837         208 ISQAIRDIPW-------HIVDQLKLGGRMLF  231 (299)
Q Consensus       208 ~~~~~~~~~~-------~~~~~L~~gG~lv~  231 (299)
                      ++-.++.+.+       ++...|+++|.++-
T Consensus       204 ~lkti~~Le~q~kg~g~~ll~aL~~~~vvVS  234 (281)
T 3lcv_B          204 LLKTLPCLETQQRGSGWEVIDIVNSPNIVVT  234 (281)
T ss_dssp             ETTCHHHHHHHSTTHHHHHHHHSSCSEEEEE
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHhCCCCEEEe
Confidence            9999987764       68888999887654

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.10  E-value=7.4e-10  Score=98.91  Aligned_cols=97  Identities=19%  Similarity=0.240  Sum_probs=74.1

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      ...++.+|||+|||+|.++..+++.  +.+++++|++ .++.  +++++..    ....+++++.+|+....+   +||+
T Consensus       181 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~----~~~~~v~~~~~d~~~~~p---~~D~  250 (348)
T 3lst_A          181 DFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAP----DVAGRWKVVEGDFLREVP---HADV  250 (348)
T ss_dssp             CCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCG----GGTTSEEEEECCTTTCCC---CCSE
T ss_pred             CccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--ccccccc----CCCCCeEEEecCCCCCCC---CCcE
Confidence            4567889999999999999999886  4579999994 4443  3322221    345689999999974333   7999


Q ss_pred             EEecchhhh--------HHHHHHHhccCCcEEEEEec
Q psy7837         206 IYISQAIRD--------IPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       206 v~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~  234 (299)
                      |++..++++        +.+++.++|||||++++...
T Consensus       251 v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~  287 (348)
T 3lst_A          251 HVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDA  287 (348)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred             EEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            999998864        34578999999999999764

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.09  E-value=4.9e-10  Score=95.56  Aligned_cols=94  Identities=14%  Similarity=0.072  Sum_probs=72.5

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC---
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD---  199 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---  199 (299)
                      +.......++.+|||||||+|.++..+++.+.+|+++|+++.+++.+++++..       ..+++++++|+.....+   
T Consensus        21 iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~-------~~~v~~i~~D~~~~~~~~~~   93 (255)
T 3tqs_A           21 IVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQ-------QKNITIYQNDALQFDFSSVK   93 (255)
T ss_dssp             HHHHHCCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTT-------CTTEEEEESCTTTCCGGGSC
T ss_pred             HHHhcCCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhh-------CCCcEEEEcchHhCCHHHhc
Confidence            33344567789999999999999999999999999999999999999998753       35899999999864332   


Q ss_pred             -CCCeeEEEecchhhhHHHHHHHhcc
Q psy7837         200 -AAPYDVIYISQAIRDIPWHIVDQLK  224 (299)
Q Consensus       200 -~~~fD~v~~~~~~~~~~~~~~~~L~  224 (299)
                       ..+|| |+.|.+.....+-+.++|.
T Consensus        94 ~~~~~~-vv~NlPY~is~~il~~ll~  118 (255)
T 3tqs_A           94 TDKPLR-VVGNLPYNISTPLLFHLFS  118 (255)
T ss_dssp             CSSCEE-EEEECCHHHHHHHHHHHHH
T ss_pred             cCCCeE-EEecCCcccCHHHHHHHHh
Confidence             25688 7788776544344444443

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.09  E-value=3.6e-10  Score=100.77  Aligned_cols=99  Identities=15%  Similarity=0.133  Sum_probs=81.2

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcC-------CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCC
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMG-------AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAP  202 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~-------~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  202 (299)
                      .++.+|||+|||+|.++..+++..       .+++|+|+++.+++.|+.++...     +. ++.++++|...... ..+
T Consensus       129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~-----g~-~~~i~~~D~l~~~~-~~~  201 (344)
T 2f8l_A          129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ-----RQ-KMTLLHQDGLANLL-VDP  201 (344)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH-----TC-CCEEEESCTTSCCC-CCC
T ss_pred             CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhC-----CC-CceEEECCCCCccc-cCC
Confidence            457899999999999999887663       67999999999999999998762     33 68999999876443 367


Q ss_pred             eeEEEecchhh------------------------hHHHHHHHhccCCcEEEEEecC
Q psy7837         203 YDVIYISQAIR------------------------DIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       203 fD~v~~~~~~~------------------------~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ||+|++++++.                        .+...+.+.|+|||++++..+.
T Consensus       202 fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~  258 (344)
T 2f8l_A          202 VDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD  258 (344)
T ss_dssp             EEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred             ccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECc
Confidence            99999998842                        2457888999999999998853

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.08  E-value=1.6e-10  Score=101.27  Aligned_cols=100  Identities=11%  Similarity=-0.029  Sum_probs=72.3

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeC----ChHHHHHHHHHHHhcCCcccCCCCeEEEEc-CCCCCCCCCC
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEH----VKNLCKRAMKNIRRGAPAIALAENFEFVCA-DGRRGYPDAA  201 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~----~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~  201 (299)
                      ..+.++.+|||+|||+|.++..+++. .+|+++|+    ++.+++..+  .+.     ....++.++++ |+....  ..
T Consensus        78 ~~~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~--~~~-----~~~~~v~~~~~~D~~~l~--~~  147 (305)
T 2p41_A           78 NLVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIP--MST-----YGWNLVRLQSGVDVFFIP--PE  147 (305)
T ss_dssp             TSSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCC--CCS-----TTGGGEEEECSCCTTTSC--CC
T ss_pred             CCCCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHH--hhh-----cCCCCeEEEeccccccCC--cC
Confidence            34567899999999999999999998 68999999    554332110  011     12257899998 877643  35


Q ss_pred             CeeEEEecchhh------------hHHHHHHHhccCCcEEEEEecCC
Q psy7837         202 PYDVIYISQAIR------------DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       202 ~fD~v~~~~~~~------------~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +||+|+++.+..            .+...+.++|||||.+++.+...
T Consensus       148 ~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          148 RCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             CCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             CCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            799999986531            23456779999999999977654

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.08  E-value=2.2e-10  Score=97.93  Aligned_cols=102  Identities=14%  Similarity=0.100  Sum_probs=75.4

Q ss_pred             CCCeEEEEcCCC--cHHHHHHHH---cCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---CC---
Q psy7837         131 YGSKVLDIGSGS--GYLSALFAY---MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---PD---  199 (299)
Q Consensus       131 ~~~~vLDiG~G~--G~~~~~la~---~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~---  199 (299)
                      .-.++||||||+  +.++..+++   .+++|+++|.|+.|++.+++++..     ....+++++++|+.+..   ..   
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~-----~~~~~~~~v~aD~~~~~~~l~~~~~  152 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAS-----TPEGRTAYVEADMLDPASILDAPEL  152 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCC-----CSSSEEEEEECCTTCHHHHHTCHHH
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhcc-----CCCCcEEEEEecccChhhhhccccc
Confidence            447899999997  334454443   278999999999999999998865     23457999999998631   00   


Q ss_pred             CCCee-----EEEecchhhhHH---------HHHHHhccCCcEEEEEecCCC
Q psy7837         200 AAPYD-----VIYISQAIRDIP---------WHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       200 ~~~fD-----~v~~~~~~~~~~---------~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      .+.||     .|+++.++++++         .++.+.|+|||+|+++.....
T Consensus       153 ~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d  204 (277)
T 3giw_A          153 RDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE  204 (277)
T ss_dssp             HTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred             ccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence            13354     577888887553         467888999999999976653

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.05  E-value=3.6e-09  Score=94.65  Aligned_cols=99  Identities=20%  Similarity=0.249  Sum_probs=80.4

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      ...+..+|+|||||+|.++..+++.  +.+++..|. +.+++.++++++.     ....+++++.+|+.....  ..+|+
T Consensus       176 ~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~-----~~~~rv~~~~gD~~~~~~--~~~D~  247 (353)
T 4a6d_A          176 DLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSF-----QEEEQIDFQEGDFFKDPL--PEADL  247 (353)
T ss_dssp             CGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC-------CCSEEEEESCTTTSCC--CCCSE
T ss_pred             CcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhh-----cccCceeeecCccccCCC--CCceE
Confidence            4566789999999999999999887  567888886 8899999988765     457899999999886543  34899


Q ss_pred             EEecchhhhH--------HHHHHHhccCCcEEEEEec
Q psy7837         206 IYISQAIRDI--------PWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       206 v~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~  234 (299)
                      +++..+++.+        .+++.+.|+|||++++...
T Consensus       248 ~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~  284 (353)
T 4a6d_A          248 YILARVLHDWADGKCSHLLERIYHTCKPGGGILVIES  284 (353)
T ss_dssp             EEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             EEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence            9999988643        4578899999999999764

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.03  E-value=8.6e-10  Score=91.33  Aligned_cols=88  Identities=16%  Similarity=0.091  Sum_probs=70.3

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      +....++.+|||+|||+|.++..+   +.+++++|+++.                    ++.++.+|+.......++||+
T Consensus        62 l~~~~~~~~vLDiG~G~G~~~~~l---~~~v~~~D~s~~--------------------~~~~~~~d~~~~~~~~~~fD~  118 (215)
T 2zfu_A           62 LRQRPASLVVADFGCGDCRLASSI---RNPVHCFDLASL--------------------DPRVTVCDMAQVPLEDESVDV  118 (215)
T ss_dssp             HHTSCTTSCEEEETCTTCHHHHHC---CSCEEEEESSCS--------------------STTEEESCTTSCSCCTTCEEE
T ss_pred             HhccCCCCeEEEECCcCCHHHHHh---hccEEEEeCCCC--------------------CceEEEeccccCCCCCCCEeE
Confidence            334467889999999999998877   478999999874                    456788898875555578999


Q ss_pred             EEecchhh-----hHHHHHHHhccCCcEEEEEecCC
Q psy7837         206 IYISQAIR-----DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       206 v~~~~~~~-----~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      |++..+++     .+.+++.++|+|||.+++.....
T Consensus       119 v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~~~  154 (215)
T 2zfu_A          119 AVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSS  154 (215)
T ss_dssp             EEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred             EEEehhccccCHHHHHHHHHHhCCCCeEEEEEEcCC
Confidence            99988764     34578999999999999986543

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.03  E-value=4.7e-10  Score=101.19  Aligned_cols=99  Identities=16%  Similarity=0.066  Sum_probs=81.2

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--C-CeEEEEeCChHHHHHHHHHHHhcCCcccCCC-C-eEEEEcCCCCCCC--CCCC
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--G-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAE-N-FEFVCADGRRGYP--DAAP  202 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~-~-v~~~~~d~~~~~~--~~~~  202 (299)
                      .++.+|||++||+|.+++.+++.  | ..|+++|+++.+++.+++|++.|     ... + ++++.+|+.....  ....
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~N-----gl~~~~v~v~~~Da~~~l~~~~~~~  125 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLN-----NIPEDRYEIHGMEANFFLRKEWGFG  125 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHT-----TCCGGGEEEECSCHHHHHHSCCSSC
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHh-----CCCCceEEEEeCCHHHHHHHhhCCC
Confidence            45789999999999999999884  5 46999999999999999999984     444 4 9999999864321  1357


Q ss_pred             eeEEEecch--hhhHHHHHHHhccCCcEEEEEe
Q psy7837         203 YDVIYISQA--IRDIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       203 fD~v~~~~~--~~~~~~~~~~~L~~gG~lv~~~  233 (299)
                      ||+|++++.  ...+.+.+.+.|++||.+++++
T Consensus       126 fD~V~lDP~g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          126 FDYVDLDPFGTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             EEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcEEEECCCcCHHHHHHHHHHHhCCCCEEEEEe
Confidence            999999983  2357788899999999998876

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.02  E-value=3.9e-10  Score=101.63  Aligned_cols=103  Identities=14%  Similarity=0.043  Sum_probs=81.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc-C-CeEEEEeCChHHHHHHHHHHHhcCCcc----------cCCCCeEEEEcCCCCCCC
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM-G-AKVYAIEHVKNLCKRAMKNIRRGAPAI----------ALAENFEFVCADGRRGYP  198 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~-~-~~v~~~D~~~~~~~~a~~~~~~~~~~~----------~~~~~v~~~~~d~~~~~~  198 (299)
                      ++.+|||+|||+|..++.+++. + .+|+++|+++.+++.+++|++.+....          ....+++++++|+.....
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            5889999999999999999886 4 579999999999999999998841000          034459999999865321


Q ss_pred             C-CCCeeEEEecchh--hhHHHHHHHhccCCcEEEEEe
Q psy7837         199 D-AAPYDVIYISQAI--RDIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       199 ~-~~~fD~v~~~~~~--~~~~~~~~~~L~~gG~lv~~~  233 (299)
                      . ..+||+|++++..  ..+.+.+.+.|++||.+++.+
T Consensus       127 ~~~~~fD~I~lDP~~~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          127 ERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HSTTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hccCCCCEEEeCCCCCHHHHHHHHHHhcCCCCEEEEEe
Confidence            1 2579999998754  357788899999999988875

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.02  E-value=1.3e-09  Score=100.55  Aligned_cols=135  Identities=16%  Similarity=0.175  Sum_probs=93.9

Q ss_pred             cccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHH
Q psy7837          44 HNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRI  123 (299)
Q Consensus        44 ~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~  123 (299)
                      .|+......+...+++.+.  ..++.+|+|.|||+|.+...+++.+....    .+  ..    ..+.+           
T Consensus       150 ~G~fyTP~~v~~~mv~~l~--~~~~~~VlDpacGsG~fl~~~~~~l~~~~----~~--~~----~~~~~-----------  206 (445)
T 2okc_A          150 AGQYFTPRPLIQAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQS----AS--KE----KRDFL-----------  206 (445)
T ss_dssp             CGGGCCCHHHHHHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-----C--CH----HHHHH-----------
T ss_pred             CCcccCcHHHHHHHHHHhC--CCCCCEEeccCCCcchHHHHHHHHHHHhc----CC--HH----HHHhh-----------
Confidence            4555555666667777665  67889999999999999988887654311    00  00    00001           


Q ss_pred             hhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCC--CeEEEEcCCCCCCCCCC
Q psy7837         124 NFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAE--NFEFVCADGRRGYPDAA  201 (299)
Q Consensus       124 ~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~  201 (299)
                                                  .+..++|+|+++.+++.|+.++...     +..  +..+.++|....... .
T Consensus       207 ----------------------------~~~~i~G~Ei~~~~~~lA~~nl~l~-----g~~~~~~~i~~gD~l~~~~~-~  252 (445)
T 2okc_A          207 ----------------------------RDKALHGVDNTPLVVTLASMNLYLH-----GIGTDRSPIVCEDSLEKEPS-T  252 (445)
T ss_dssp             ----------------------------HHTTEEEEESCHHHHHHHHHHHHHT-----TCCSSCCSEEECCTTTSCCS-S
T ss_pred             ----------------------------cCeEEEEEeCCHHHHHHHHHHHHHh-----CCCcCCCCEeeCCCCCCccc-C
Confidence                                        1245888888888888888877652     232  677899998764433 4


Q ss_pred             CeeEEEecchhh-----------------------hHHHHHHHhccCCcEEEEEecC
Q psy7837         202 PYDVIYISQAIR-----------------------DIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       202 ~fD~v~~~~~~~-----------------------~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      +||+|++++++.                       .+..++.+.|+|||++++..+.
T Consensus       253 ~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~  309 (445)
T 2okc_A          253 LVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD  309 (445)
T ss_dssp             CEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             CcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence            799999998753                       3457889999999999988754

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.02  E-value=5.3e-09  Score=88.68  Aligned_cols=83  Identities=23%  Similarity=0.236  Sum_probs=66.0

Q ss_pred             HHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC-C
Q psy7837         122 RINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD-A  200 (299)
Q Consensus       122 ~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~  200 (299)
                      .+.......++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++..       ..+++++++|+...... .
T Consensus        21 ~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~-------~~~v~~~~~D~~~~~~~~~   93 (244)
T 1qam_A           21 KIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVD-------HDNFQVLNKDILQFKFPKN   93 (244)
T ss_dssp             HHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTT-------CCSEEEECCCGGGCCCCSS
T ss_pred             HHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhcc-------CCCeEEEEChHHhCCcccC
Confidence            344444567789999999999999999999999999999999999999998743       25899999999875433 2


Q ss_pred             CCeeEEEecchh
Q psy7837         201 APYDVIYISQAI  212 (299)
Q Consensus       201 ~~fD~v~~~~~~  212 (299)
                      ..| .|+++.+.
T Consensus        94 ~~~-~vv~nlPy  104 (244)
T 1qam_A           94 QSY-KIFGNIPY  104 (244)
T ss_dssp             CCC-EEEEECCG
T ss_pred             CCe-EEEEeCCc
Confidence            345 56666654

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.01  E-value=7.9e-09  Score=92.93  Aligned_cols=92  Identities=16%  Similarity=0.243  Sum_probs=74.1

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI  206 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  206 (299)
                      ..+..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++           ..+++++.+|+....+ .+  |+|
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~~p-~~--D~v  265 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA-----------FSGVEHLGGDMFDGVP-KG--DAI  265 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----------CTTEEEEECCTTTCCC-CC--SEE
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh-----------cCCCEEEecCCCCCCC-CC--CEE
Confidence            556789999999999999999885  578999999 887765532           2589999999987443 23  999


Q ss_pred             Eecchhhh--------HHHHHHHhccCCcEEEEEecC
Q psy7837         207 YISQAIRD--------IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       207 ~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ++..++++        +.+++.++|+|||++++....
T Consensus       266 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  302 (368)
T 3reo_A          266 FIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYI  302 (368)
T ss_dssp             EEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             EEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            99998863        346789999999999997643

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.01  E-value=1.2e-09  Score=93.81  Aligned_cols=78  Identities=19%  Similarity=0.152  Sum_probs=65.5

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCC-CCeeEE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDA-APYDVI  206 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~fD~v  206 (299)
                      ...++ +|||||||+|.++..+++.+.+|+++|+++.+++.+++++..        .+++++++|+.....+. ..+|.|
T Consensus        44 ~~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~--------~~v~vi~~D~l~~~~~~~~~~~~i  114 (271)
T 3fut_A           44 RPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSG--------LPVRLVFQDALLYPWEEVPQGSLL  114 (271)
T ss_dssp             CCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTT--------SSEEEEESCGGGSCGGGSCTTEEE
T ss_pred             CCCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCC--------CCEEEEECChhhCChhhccCccEE
Confidence            45678 999999999999999999999999999999999999998632        58999999998643332 368999


Q ss_pred             Eecchhhh
Q psy7837         207 YISQAIRD  214 (299)
Q Consensus       207 ~~~~~~~~  214 (299)
                      +.|.+...
T Consensus       115 v~NlPy~i  122 (271)
T 3fut_A          115 VANLPYHI  122 (271)
T ss_dssp             EEEECSSC
T ss_pred             EecCcccc
Confidence            99887643

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.00  E-value=5.9e-09  Score=93.85  Aligned_cols=90  Identities=17%  Similarity=0.160  Sum_probs=73.3

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI  206 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  206 (299)
                      +.++.+|||+|||+|.++..+++.  +.+++++|+ +.+++.+++           ..+++++.+|+.... + . ||+|
T Consensus       207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~~-~-~-~D~v  271 (372)
T 1fp1_D          207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP-----------LSGIEHVGGDMFASV-P-Q-GDAM  271 (372)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----------CTTEEEEECCTTTCC-C-C-EEEE
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh-----------cCCCEEEeCCcccCC-C-C-CCEE
Confidence            566789999999999999999887  457899999 888876542           246999999998733 2 2 9999


Q ss_pred             Eecchhhh--------HHHHHHHhccCCcEEEEEe
Q psy7837         207 YISQAIRD--------IPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       207 ~~~~~~~~--------~~~~~~~~L~~gG~lv~~~  233 (299)
                      ++..++++        +.+++.++|+|||++++..
T Consensus       272 ~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e  306 (372)
T 1fp1_D          272 ILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE  306 (372)
T ss_dssp             EEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            99998864        3467899999999999874

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.98  E-value=1.3e-08  Score=91.47  Aligned_cols=92  Identities=18%  Similarity=0.205  Sum_probs=74.1

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI  206 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  206 (299)
                      ..+..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++           ..+++++.+|+....+ .+  |+|
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~~p-~~--D~v  263 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ-----------FPGVTHVGGDMFKEVP-SG--DTI  263 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----------CTTEEEEECCTTTCCC-CC--SEE
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh-----------cCCeEEEeCCcCCCCC-CC--CEE
Confidence            567789999999999999999875  578999999 777765532           3589999999987433 23  999


Q ss_pred             EecchhhhH--------HHHHHHhccCCcEEEEEecC
Q psy7837         207 YISQAIRDI--------PWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       207 ~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ++..+++++        .+++.+.|+|||++++....
T Consensus       264 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~  300 (364)
T 3p9c_A          264 LMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCI  300 (364)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             EehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            999988643        45789999999999997543

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.98  E-value=8.8e-10  Score=98.76  Aligned_cols=96  Identities=15%  Similarity=0.102  Sum_probs=71.0

Q ss_pred             CCCCCEEEEEccC------CCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEE
Q psy7837          65 LKYGDKVLEIGTG------SGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDI  138 (299)
Q Consensus        65 ~~~g~~vldiG~G------~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDi  138 (299)
                      ..++.+|||||||      +|..+..+++...+.++++++|+++.+.        .                        
T Consensus       214 ~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~------------------------  261 (419)
T 3sso_A          214 RNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------V------------------------  261 (419)
T ss_dssp             TTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------G------------------------
T ss_pred             cCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------h------------------------
Confidence            3567899999999      6777777776655567788888877651        1                        


Q ss_pred             cCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC------CCCeeEEEecchh
Q psy7837         139 GSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD------AAPYDVIYISQAI  212 (299)
Q Consensus       139 G~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~------~~~fD~v~~~~~~  212 (299)
                                                                 ...+++++++|+.+....      .++||+|+++...
T Consensus       262 -------------------------------------------~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdgsH  298 (419)
T 3sso_A          262 -------------------------------------------DELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGSH  298 (419)
T ss_dssp             -------------------------------------------CBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECSCC
T ss_pred             -------------------------------------------cCCCcEEEEecccccchhhhhhcccCCccEEEECCcc
Confidence                                                       235899999998864322      3789999997653


Q ss_pred             h-----hHHHHHHHhccCCcEEEEEecC
Q psy7837         213 R-----DIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       213 ~-----~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      .     ...+++.++|||||++++....
T Consensus       299 ~~~d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          299 INAHVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             CHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             cchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence            1     2346899999999999997544

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.96  E-value=1.2e-09  Score=99.79  Aligned_cols=115  Identities=21%  Similarity=0.200  Sum_probs=81.5

Q ss_pred             cccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHH
Q psy7837          44 HNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRI  123 (299)
Q Consensus        44 ~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~  123 (299)
                      .|+....+.+...+++.+.  ..++.+|||+|||+|.++..+++..+...+++|+|+++.+++.+               
T Consensus        18 ~g~~~TP~~l~~~~~~~~~--~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------------   80 (421)
T 2ih2_A           18 LGRVETPPEVVDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------------   80 (421)
T ss_dssp             ---CCCCHHHHHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------------
T ss_pred             CceEeCCHHHHHHHHHhhc--cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------------
Confidence            4566666666677777665  35677999999999999999888765445677777666554322               


Q ss_pred             hhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCe
Q psy7837         124 NFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPY  203 (299)
Q Consensus       124 ~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  203 (299)
                                                                                  .+++++++|...... .++|
T Consensus        81 ------------------------------------------------------------~~~~~~~~D~~~~~~-~~~f   99 (421)
T 2ih2_A           81 ------------------------------------------------------------PWAEGILADFLLWEP-GEAF   99 (421)
T ss_dssp             ------------------------------------------------------------TTEEEEESCGGGCCC-SSCE
T ss_pred             ------------------------------------------------------------CCCcEEeCChhhcCc-cCCC
Confidence                                                                        367889999876433 3689


Q ss_pred             eEEEecchhh-----------------------------------hHHHHHHHhccCCcEEEEEecCC
Q psy7837         204 DVIYISQAIR-----------------------------------DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       204 D~v~~~~~~~-----------------------------------~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      |+|++++++.                                   .+.+.+.++|++||++++..+..
T Consensus       100 D~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~  167 (421)
T 2ih2_A          100 DLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT  167 (421)
T ss_dssp             EEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             CEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH
Confidence            9999975531                                   23457889999999999988763

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.95  E-value=3.9e-11  Score=101.95  Aligned_cols=103  Identities=16%  Similarity=0.138  Sum_probs=79.5

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC-CCCee
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD-AAPYD  204 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD  204 (299)
                      .....++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++..       ..+++++++|+...... .++| 
T Consensus        24 ~~~~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~-------~~~v~~~~~D~~~~~~~~~~~f-   95 (245)
T 1yub_A           24 QLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL-------NTRVTLIHQDILQFQFPNKQRY-   95 (245)
T ss_dssp             HCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT-------CSEEEECCSCCTTTTCCCSSEE-
T ss_pred             hcCCCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhcc-------CCceEEEECChhhcCcccCCCc-
Confidence            34556788999999999999999999999999999999999888776532       35899999999875433 2578 


Q ss_pred             EEEecchhh-------hHH--------------HHHHHhccCCcEEEEEecCC
Q psy7837         205 VIYISQAIR-------DIP--------------WHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       205 ~v~~~~~~~-------~~~--------------~~~~~~L~~gG~lv~~~~~~  236 (299)
                      .|+++.+..       ++.              +.+.++|+|||.+++.....
T Consensus        96 ~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~~~  148 (245)
T 1yub_A           96 KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLHTQ  148 (245)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTTTT
T ss_pred             EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhheeh
Confidence            677765421       111              45889999999988876554

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.93  E-value=1.4e-08  Score=90.60  Aligned_cols=91  Identities=14%  Similarity=0.246  Sum_probs=74.0

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI  206 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  206 (299)
                      ..++.+|||+|||+|.++..+++.  +.+++++|+ +.+++.+++           ..+++++.+|+....+   .||+|
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~~p---~~D~v  250 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG-----------SNNLTYVGGDMFTSIP---NADAV  250 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----------BTTEEEEECCTTTCCC---CCSEE
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc-----------CCCcEEEeccccCCCC---CccEE
Confidence            456789999999999999999876  578999999 988876643           1359999999876332   39999


Q ss_pred             Eecchhhh--------HHHHHHHhccC---CcEEEEEec
Q psy7837         207 YISQAIRD--------IPWHIVDQLKL---GGRMLFIKG  234 (299)
Q Consensus       207 ~~~~~~~~--------~~~~~~~~L~~---gG~lv~~~~  234 (299)
                      ++..++++        +.+++.++|+|   ||++++...
T Consensus       251 ~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~  289 (352)
T 1fp2_A          251 LLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM  289 (352)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred             EeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence            99998864        34578999999   999998754

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.92  E-value=2.5e-09  Score=96.77  Aligned_cols=102  Identities=20%  Similarity=0.156  Sum_probs=77.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC--CCCeeEEEe
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD--AAPYDVIYI  208 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~v~~  208 (299)
                      ++.+|||+|||+|..++.+++.+.+|+++|+++.+++.+++|++.+.   .+..+++++++|+......  ..+||+|++
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~---~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l  169 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLL---NEGKDVNILTGDFKEYLPLIKTFHPDYIYV  169 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHS---CTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhc---cCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence            48999999999999999999999999999999999999999998720   0347899999998864321  247999999


Q ss_pred             cchhhhHH--------------HHHHHhc-cCCcEEEEEecC
Q psy7837         209 SQAIRDIP--------------WHIVDQL-KLGGRMLFIKGH  235 (299)
Q Consensus       209 ~~~~~~~~--------------~~~~~~L-~~gG~lv~~~~~  235 (299)
                      +++...-.              ..+.+.| .....+++...+
T Consensus       170 DPPrr~~~~grv~~led~~P~l~~~~~~l~~~~~~~~vK~sP  211 (410)
T 3ll7_A          170 DPARRSGADKRVYAIADCEPDLIPLATELLPFCSSILAKLSP  211 (410)
T ss_dssp             CCEEC-----CCCCGGGEESCHHHHHHHHGGGSSEEEEEECT
T ss_pred             CCCCcCCCCceEEehhhcCCCHHHHHHHHHhhCCcEEEEcCC
Confidence            98753211              2455543 445566666544

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.88  E-value=6.6e-10  Score=89.18  Aligned_cols=84  Identities=14%  Similarity=0.131  Sum_probs=68.5

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC---CCCCee
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP---DAAPYD  204 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD  204 (299)
                      .+.+|.+|||+|||.              +.+|+|+.|++.++++...         +++++++|+.....   +.++||
T Consensus         9 g~~~g~~vL~~~~g~--------------v~vD~s~~ml~~a~~~~~~---------~~~~~~~d~~~~~~~~~~~~~fD   65 (176)
T 2ld4_A            9 GISAGQFVAVVWDKS--------------SPVEALKGLVDKLQALTGN---------EGRVSVENIKQLLQSAHKESSFD   65 (176)
T ss_dssp             TCCTTSEEEEEECTT--------------SCHHHHHHHHHHHHHHTTT---------TSEEEEEEGGGGGGGCCCSSCEE
T ss_pred             CCCCCCEEEEecCCc--------------eeeeCCHHHHHHHHHhccc---------CcEEEEechhcCccccCCCCCEe
Confidence            457899999999996              2389999999999987532         58999999886544   457899


Q ss_pred             EEEecchhhhH-------HHHHHHhccCCcEEEEEec
Q psy7837         205 VIYISQAIRDI-------PWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       205 ~v~~~~~~~~~-------~~~~~~~L~~gG~lv~~~~  234 (299)
                      +|++..+++++       .+++.++|||||++++..+
T Consensus        66 ~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  102 (176)
T 2ld4_A           66 IILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEP  102 (176)
T ss_dssp             EEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcc
Confidence            99998877654       4689999999999999644

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.88  E-value=6.6e-10  Score=94.97  Aligned_cols=82  Identities=21%  Similarity=0.245  Sum_probs=65.9

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCCh-------HHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC--
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVK-------NLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP--  198 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~-------~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--  198 (299)
                      ...++.+|||+|||+|..++.+++.+.+|+++|+++       .+++.++++++.+    ....+++++++|+.....  
T Consensus        80 ~~~~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~----~~~~ri~~~~~d~~~~l~~~  155 (258)
T 2r6z_A           80 NHTAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQ----DTAARINLHFGNAAEQMPAL  155 (258)
T ss_dssp             TGGGCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHH----HHHTTEEEEESCHHHHHHHH
T ss_pred             CcCCcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhh----CCccCeEEEECCHHHHHHhh
Confidence            445678999999999999999999999999999999       9999999888763    223459999999875322  


Q ss_pred             CC--CCeeEEEecchhh
Q psy7837         199 DA--APYDVIYISQAIR  213 (299)
Q Consensus       199 ~~--~~fD~v~~~~~~~  213 (299)
                      ..  ++||+|++++++.
T Consensus       156 ~~~~~~fD~V~~dP~~~  172 (258)
T 2r6z_A          156 VKTQGKPDIVYLDPMYP  172 (258)
T ss_dssp             HHHHCCCSEEEECCCC-
T ss_pred             hccCCCccEEEECCCCC
Confidence            11  5799999987543

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.86  E-value=1.9e-08  Score=97.61  Aligned_cols=114  Identities=19%  Similarity=0.206  Sum_probs=85.7

Q ss_pred             HHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcC--------------------------------------------Ce
Q psy7837         120 IKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMG--------------------------------------------AK  155 (299)
Q Consensus       120 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~--------------------------------------------~~  155 (299)
                      ...+..+....++..++|.+||+|.+++.++..+                                            ..
T Consensus       179 Aa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~  258 (703)
T 3v97_A          179 AAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSH  258 (703)
T ss_dssp             HHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCcc
Confidence            3344445566778899999999999999887642                                            47


Q ss_pred             EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC--CCCeeEEEecchhh----------hHHH---HHH
Q psy7837         156 VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD--AAPYDVIYISQAIR----------DIPW---HIV  220 (299)
Q Consensus       156 v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~v~~~~~~~----------~~~~---~~~  220 (299)
                      ++|+|+++.+++.|+.|++.+    +....+++.++|+.....+  .++||+|++|+++-          .+..   +..
T Consensus       259 i~G~Did~~av~~A~~N~~~a----gv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~l  334 (703)
T 3v97_A          259 FYGSDSDARVIQRARTNARLA----GIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIM  334 (703)
T ss_dssp             EEEEESCHHHHHHHHHHHHHT----TCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHH
T ss_pred             EEEEECCHHHHHHHHHHHHHc----CCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHH
Confidence            999999999999999999884    3344699999999864322  23799999998852          1222   344


Q ss_pred             HhccCCcEEEEEecCCC
Q psy7837         221 DQLKLGGRMLFIKGHED  237 (299)
Q Consensus       221 ~~L~~gG~lv~~~~~~~  237 (299)
                      +.+.+||.+++.++...
T Consensus       335 k~~~~g~~~~ilt~~~~  351 (703)
T 3v97_A          335 KNQFGGWNLSLFSASPD  351 (703)
T ss_dssp             HHHCTTCEEEEEESCHH
T ss_pred             HhhCCCCeEEEEeCCHH
Confidence            55568999999987654

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.85  E-value=9.9e-09  Score=96.71  Aligned_cols=141  Identities=11%  Similarity=0.051  Sum_probs=93.1

Q ss_pred             cccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHH
Q psy7837          44 HNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRI  123 (299)
Q Consensus        44 ~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~  123 (299)
                      .|+......+...+++.+.  ..++.+|+|.+||+|.+...+++.+...+.-. .+++..    ..+.+           
T Consensus       148 ~G~fyTP~~iv~~mv~~l~--p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~-~~~~~~----~~~~~-----------  209 (541)
T 2ar0_A          148 AGQYFTPRPLIKTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDL-DDLDGD----TQDFQ-----------  209 (541)
T ss_dssp             --CCCCCHHHHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTT-TTSCHH----HHHHH-----------
T ss_pred             CCeeeCCHHHHHHHHHHhc--cCCCCeEecCCcccchHHHHHHHHHHHhhccc-ccCCHH----HHhhh-----------
Confidence            4666666666667777765  67889999999999999888877653211000 011111    00001           


Q ss_pred             hhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCC-----eEEEEcCCCCCC-
Q psy7837         124 NFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAEN-----FEFVCADGRRGY-  197 (299)
Q Consensus       124 ~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~-----v~~~~~d~~~~~-  197 (299)
                                                  ....++|+|+++.+++.|+.++...     +..+     ..+.++|..... 
T Consensus       210 ----------------------------~~~~i~GiEid~~~~~lA~~nl~l~-----gi~~~~~~~~~I~~gDtL~~~~  256 (541)
T 2ar0_A          210 ----------------------------IHRAFIGLELVPGTRRLALMNCLLH-----DIEGNLDHGGAIRLGNTLGSDG  256 (541)
T ss_dssp             ----------------------------HHTSEEEEESCHHHHHHHHHHHHTT-----TCCCBGGGTBSEEESCTTSHHH
T ss_pred             ----------------------------hcceEEEEcCCHHHHHHHHHHHHHh-----CCCccccccCCeEeCCCccccc
Confidence                                        1245888888888888888887652     3333     778899876422 


Q ss_pred             CCCCCeeEEEecchhh--------------------hHHHHHHHhccCCcEEEEEecC
Q psy7837         198 PDAAPYDVIYISQAIR--------------------DIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       198 ~~~~~fD~v~~~~~~~--------------------~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ....+||+|++++++.                    .+...+.+.|++||++++.+++
T Consensus       257 ~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~  314 (541)
T 2ar0_A          257 ENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD  314 (541)
T ss_dssp             HTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             ccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence            2236799999998753                    2557889999999999998764

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.83  E-value=8e-09  Score=90.09  Aligned_cols=62  Identities=19%  Similarity=0.205  Sum_probs=51.9

Q ss_pred             CcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          50 SPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        50 ~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .|-+...+++.|.  +++|.+|||+|||+|..+..+++.++ .++++++|+++.+++.+++++..
T Consensus        11 ~pvLl~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~   72 (301)
T 1m6y_A           11 IPVMVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKE   72 (301)
T ss_dssp             CCTTHHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGG
T ss_pred             cHHHHHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHh
Confidence            4556778888886  78999999999999999999998875 57888888888888888877655

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.81  E-value=2.3e-08  Score=86.27  Aligned_cols=89  Identities=18%  Similarity=0.103  Sum_probs=68.1

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHcCCe----EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCC--
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYMGAK----VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDA--  200 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~~~~----v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--  200 (299)
                      ....++.+|||||||+|.++..+++.+..    |+++|+++.+++.++++. .        .+++++++|+.....+.  
T Consensus        38 ~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~--------~~v~~i~~D~~~~~~~~~~  108 (279)
T 3uzu_A           38 IRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-G--------ELLELHAGDALTFDFGSIA  108 (279)
T ss_dssp             HCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-G--------GGEEEEESCGGGCCGGGGS
T ss_pred             cCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-C--------CCcEEEECChhcCChhHhc
Confidence            34567899999999999999999998777    999999999999999884 2        37999999988643221  


Q ss_pred             --C--CeeEEEecchhhhHHHHHHHhcc
Q psy7837         201 --A--PYDVIYISQAIRDIPWHIVDQLK  224 (299)
Q Consensus       201 --~--~fD~v~~~~~~~~~~~~~~~~L~  224 (299)
                        .  ..+.|+.|.+.....+-+.++|.
T Consensus       109 ~~~~~~~~~vv~NlPY~iss~il~~ll~  136 (279)
T 3uzu_A          109 RPGDEPSLRIIGNLPYNISSPLLFHLMS  136 (279)
T ss_dssp             CSSSSCCEEEEEECCHHHHHHHHHHHGG
T ss_pred             ccccCCceEEEEccCccccHHHHHHHHh
Confidence              1  24577888776554444555554

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.79  E-value=1.7e-08  Score=87.36  Aligned_cols=89  Identities=18%  Similarity=0.199  Sum_probs=66.5

Q ss_pred             cccCCCCeEEEEcCCC------cHHHHHHHHc---CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEE-EEcCCCCC
Q psy7837         127 GHLVYGSKVLDIGSGS------GYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF-VCADGRRG  196 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~------G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~-~~~d~~~~  196 (299)
                      ..+.++.+|||+|||+      |.  ..+++.   +.+|+++|+++.                  ..++++ +++|+...
T Consensus        59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~------------------v~~v~~~i~gD~~~~  118 (290)
T 2xyq_A           59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF------------------VSDADSTLIGDCATV  118 (290)
T ss_dssp             CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC------------------BCSSSEEEESCGGGC
T ss_pred             cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC------------------CCCCEEEEECccccC
Confidence            3567889999999955      55  333433   478999999986                  126778 99999875


Q ss_pred             CCCCCCeeEEEecchh-----------------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         197 YPDAAPYDVIYISQAI-----------------RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       197 ~~~~~~fD~v~~~~~~-----------------~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ... ++||+|+++...                 ..+.+++.++|||||.+++.....
T Consensus       119 ~~~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~  174 (290)
T 2xyq_A          119 HTA-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH  174 (290)
T ss_dssp             CCS-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred             Ccc-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            433 679999997532                 145678999999999999977544

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.78  E-value=2.1e-07  Score=80.23  Aligned_cols=134  Identities=17%  Similarity=0.074  Sum_probs=97.1

Q ss_pred             CceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHH
Q psy7837          92 SGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRA  169 (299)
Q Consensus        92 ~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a  169 (299)
                      +|.+-..+.++.........+.-            ......++||-||.|.|..+..+.+.  ..+|+.+|+++..++.+
T Consensus        56 Dg~~q~te~De~~YhE~l~h~~l------------~~~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a  123 (294)
T 3o4f_A           56 DGVVQTTERDEFIYHEMMTHVPL------------LAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFC  123 (294)
T ss_dssp             TTEEEEETTTHHHHHHHHHHHHH------------HHSSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHH
T ss_pred             CCchhhccccHHHHHHHHHHHHH------------hhCCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHH
Confidence            35566666666555544333221            11244689999999999999999987  35799999999999999


Q ss_pred             HHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCeeEEEecchh----------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         170 MKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYDVIYISQAI----------RDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~~----------~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      ++-+...........+++++.+|+..... ..++||+|+++..-          ....+.+.+.|+|||+++.....+.
T Consensus       124 ~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~  202 (294)
T 3o4f_A          124 RQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCF  202 (294)
T ss_dssp             HHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESS
T ss_pred             HhcCccccccccCCCcEEEEechHHHHHhhccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcc
Confidence            99875311111345799999999987543 24689999998642          3456789999999999999865543

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.77  E-value=2.8e-08  Score=84.42  Aligned_cols=92  Identities=16%  Similarity=0.172  Sum_probs=68.0

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHHHHHHcC-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCC-
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSALFAYMG-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDA-  200 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-  200 (299)
                      +.......++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.++++  .       ..+++++++|+.....+. 
T Consensus        23 iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~--~-------~~~v~~i~~D~~~~~~~~~   93 (249)
T 3ftd_A           23 IAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI--G-------DERLEVINEDASKFPFCSL   93 (249)
T ss_dssp             HHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS--C-------CTTEEEECSCTTTCCGGGS
T ss_pred             HHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc--c-------CCCeEEEEcchhhCChhHc
Confidence            3334455678999999999999999999995 7899999999999999876  2       247999999998643321 


Q ss_pred             -CCeeEEEecchhhhHHHHHHHhcc
Q psy7837         201 -APYDVIYISQAIRDIPWHIVDQLK  224 (299)
Q Consensus       201 -~~fD~v~~~~~~~~~~~~~~~~L~  224 (299)
                       ..+ .|+.+.+.....+-+.++|.
T Consensus        94 ~~~~-~vv~NlPy~i~~~il~~ll~  117 (249)
T 3ftd_A           94 GKEL-KVVGNLPYNVASLIIENTVY  117 (249)
T ss_dssp             CSSE-EEEEECCTTTHHHHHHHHHH
T ss_pred             cCCc-EEEEECchhccHHHHHHHHh
Confidence             233 77777776544444444443

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.74  E-value=4.1e-08  Score=87.86  Aligned_cols=90  Identities=18%  Similarity=0.280  Sum_probs=71.9

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      .+..+|||+|||+|.++..+++.  +.+++++|+ +.+++.+++           ..+++++.+|+.... +  .||+|+
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~~-~--~~D~v~  256 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG-----------NENLNFVGGDMFKSI-P--SADAVL  256 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC-----------CSSEEEEECCTTTCC-C--CCSEEE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc-----------CCCcEEEeCccCCCC-C--CceEEE
Confidence            46789999999999999999887  467999999 777765432           246999999988732 2  499999


Q ss_pred             ecchhhh--------HHHHHHHhccC---CcEEEEEec
Q psy7837         208 ISQAIRD--------IPWHIVDQLKL---GGRMLFIKG  234 (299)
Q Consensus       208 ~~~~~~~--------~~~~~~~~L~~---gG~lv~~~~  234 (299)
                      +..++++        +.+++.++|+|   ||++++...
T Consensus       257 ~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~  294 (358)
T 1zg3_A          257 LKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDI  294 (358)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred             EcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence            9998864        34578999999   999998753

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.70  E-value=1.2e-08  Score=86.85  Aligned_cols=116  Identities=16%  Similarity=0.203  Sum_probs=78.2

Q ss_pred             eEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCC--CeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHH
Q psy7837          94 KVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYG--SKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMK  171 (299)
Q Consensus        94 ~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~--~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~  171 (299)
                      ..+.+|+.+......++.....-+.    +.....+.++  .+|||++||+|..++.+++.|++|+++|.++.+...+++
T Consensus        53 ~~~~~df~~g~~~~r~~~~~~~~e~----l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~  128 (258)
T 2oyr_A           53 GGIFVDFVGGAMAHRRKFGGGRGEA----VAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDD  128 (258)
T ss_dssp             CEECCCSSSHHHHHHHHHSCGGGSH----HHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHH
T ss_pred             CCEEeeccCCHHHHHHhhcCchHHH----HHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence            3567778776654422222111122    2233345567  899999999999999999999999999999998777777


Q ss_pred             HHHhcC--Cccc--CCCCeEEEEcCCCCCCC-CCCCeeEEEecchhh
Q psy7837         172 NIRRGA--PAIA--LAENFEFVCADGRRGYP-DAAPYDVIYISQAIR  213 (299)
Q Consensus       172 ~~~~~~--~~~~--~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~~~  213 (299)
                      +++...  ...+  ...+++++++|...... ...+||+|++++++.
T Consensus       129 ~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV~lDP~y~  175 (258)
T 2oyr_A          129 GLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMFP  175 (258)
T ss_dssp             HHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEEECCCCC
T ss_pred             HHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCEEEEcCCCC
Confidence            765310  0001  11579999999875322 123699999998775

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.67  E-value=2.6e-08  Score=84.69  Aligned_cols=82  Identities=13%  Similarity=0.014  Sum_probs=62.1

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCe--EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCC
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSALFAYMGAK--VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDA  200 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~--v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  200 (299)
                      +.......++.+|||||||+|.++. +++ +.+  |+++|+++.+++.+++++..       ..+++++++|+.......
T Consensus        13 iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~-------~~~v~~i~~D~~~~~~~~   83 (252)
T 1qyr_A           13 IVSAINPQKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFL-------GPKLTIYQQDAMTFNFGE   83 (252)
T ss_dssp             HHHHHCCCTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTT-------GGGEEEECSCGGGCCHHH
T ss_pred             HHHhcCCCCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhcc-------CCceEEEECchhhCCHHH
Confidence            3333456778999999999999999 654 667  99999999999999987643       248999999988643211


Q ss_pred             -----CCeeEEEecchhh
Q psy7837         201 -----APYDVIYISQAIR  213 (299)
Q Consensus       201 -----~~fD~v~~~~~~~  213 (299)
                           +..|.|+.+.+..
T Consensus        84 ~~~~~~~~~~vvsNlPY~  101 (252)
T 1qyr_A           84 LAEKMGQPLRVFGNLPYN  101 (252)
T ss_dssp             HHHHHTSCEEEEEECCTT
T ss_pred             hhcccCCceEEEECCCCC
Confidence                 2347888887753

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.65  E-value=4.6e-07  Score=85.17  Aligned_cols=127  Identities=17%  Similarity=0.071  Sum_probs=88.0

Q ss_pred             cccccCCcchHHHHHHHHhcc--CCCCCEEEEEccCCCHHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHHHHHhHHHH
Q psy7837          44 HNAFMESPSDHCLVLELLSGH--LKYGDKVLEIGTGSGYLTTLFGAMVGI--SGKVYTIEHIPELLEAARKRVKAKAETY  119 (299)
Q Consensus        44 ~~~~~~~p~~~~~~~~~l~~~--~~~g~~vldiG~G~G~~~~~la~~~~~--~g~v~~~d~~~~~~~~a~~~l~~~~~~~  119 (299)
                      .|++...+.+...|++.+...  ..++.+|+|.+||+|.+...+.+.+..  ...++|+|+++..+..|+.++..     
T Consensus       196 ~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l-----  270 (542)
T 3lkd_A          196 AGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMIL-----  270 (542)
T ss_dssp             CSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHH-----
T ss_pred             CCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHH-----
Confidence            466777777777777777633  247889999999999988877776532  23566666666666555554433     


Q ss_pred             HHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCC--CCeEEEEcCCCCC-
Q psy7837         120 IKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALA--ENFEFVCADGRRG-  196 (299)
Q Consensus       120 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~--~~v~~~~~d~~~~-  196 (299)
                                                                                   .+.  .+..+.++|.... 
T Consensus       271 -------------------------------------------------------------~gi~~~~~~I~~gDtL~~d  289 (542)
T 3lkd_A          271 -------------------------------------------------------------HGVPIENQFLHNADTLDED  289 (542)
T ss_dssp             -------------------------------------------------------------TTCCGGGEEEEESCTTTSC
T ss_pred             -------------------------------------------------------------cCCCcCccceEecceeccc
Confidence                                                                         122  4678899997753 


Q ss_pred             -C-CCCCCeeEEEecchhh-----------------------------hHHHHHHHhcc-CCcEEEEEecCC
Q psy7837         197 -Y-PDAAPYDVIYISQAIR-----------------------------DIPWHIVDQLK-LGGRMLFIKGHE  236 (299)
Q Consensus       197 -~-~~~~~fD~v~~~~~~~-----------------------------~~~~~~~~~L~-~gG~lv~~~~~~  236 (299)
                       + ....+||+|++|+++.                             .+...+.+.|+ +||++.+..++.
T Consensus       290 ~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g  361 (542)
T 3lkd_A          290 WPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHG  361 (542)
T ss_dssp             SCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETH
T ss_pred             ccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecch
Confidence             1 2346899999998751                             03457889999 999999887753

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.63  E-value=9.2e-08  Score=90.02  Aligned_cols=138  Identities=19%  Similarity=0.143  Sum_probs=88.8

Q ss_pred             cccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHH
Q psy7837          44 HNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRI  123 (299)
Q Consensus        44 ~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~  123 (299)
                      .|++...+.+...|++.+.  ..++ +|+|.+||+|.+...+.+.+..                   .....        
T Consensus       224 ~G~fyTP~~Vv~lmv~ll~--p~~~-~VlDPaCGSG~fLi~a~~~l~~-------------------~~~~~--------  273 (544)
T 3khk_A          224 GGQYYTPKSIVTLIVEMLE--PYKG-RVYDPAMGSGGFFVSSDKFIEK-------------------HANVK--------  273 (544)
T ss_dssp             STTTCCCHHHHHHHHHHHC--CCSE-EEEESSCTTCHHHHHHHHHHHH-------------------HHHHH--------
T ss_pred             CCeEeCCHHHHHHHHHHHh--cCCC-eEeCcccCcCcHHHHHHHHHHH-------------------hcccc--------
Confidence            4677777777777777775  4555 9999999999887776654311                   00000        


Q ss_pred             hhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-CCCCC
Q psy7837         124 NFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-PDAAP  202 (299)
Q Consensus       124 ~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~  202 (299)
                                         + ....-......++|+|+++.++..|+.|+...    +...++.+.++|..... ....+
T Consensus       274 -------------------~-~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~----gi~~~i~i~~gDtL~~~~~~~~~  329 (544)
T 3khk_A          274 -------------------H-YNASEQKKQISVYGQESNPTTWKLAAMNMVIR----GIDFNFGKKNADSFLDDQHPDLR  329 (544)
T ss_dssp             -------------------T-SCHHHHGGGEEEEECCCCHHHHHHHHHHHHHT----TCCCBCCSSSCCTTTSCSCTTCC
T ss_pred             -------------------c-cchHHHhhhceEEEEeCCHHHHHHHHHHHHHh----CCCcccceeccchhcCccccccc
Confidence                               0 00000111346888888888888888877652    22234444677765432 23468


Q ss_pred             eeEEEecchhhh-----------------------------------HHHHHHHhccCCcEEEEEecC
Q psy7837         203 YDVIYISQAIRD-----------------------------------IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       203 fD~v~~~~~~~~-----------------------------------~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ||+|++|+++..                                   +...+.+.|++||++++.+++
T Consensus       330 fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~  397 (544)
T 3khk_A          330 ADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLAN  397 (544)
T ss_dssp             EEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEET
T ss_pred             ccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecc
Confidence            999999987631                                   345788999999999998765

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.60  E-value=1.3e-07  Score=76.08  Aligned_cols=58  Identities=21%  Similarity=0.315  Sum_probs=50.0

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ...+.+.+...+++|++|||+|||+|.++..+++.   .++|+++|+++.+++.+++++..
T Consensus         9 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~   66 (185)
T 3mti_A            9 IHMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSD   66 (185)
T ss_dssp             HHHHHHHHHTTCCTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHH
Confidence            34455556666889999999999999999999987   46899999999999999998876

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.55  E-value=3.3e-07  Score=87.08  Aligned_cols=95  Identities=19%  Similarity=0.139  Sum_probs=68.4

Q ss_pred             CCCCeEEEEcCCCcHHHHHHH---Hc-CC--eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCe
Q psy7837         130 VYGSKVLDIGSGSGYLSALFA---YM-GA--KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPY  203 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la---~~-~~--~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  203 (299)
                      ..+..|||+|||+|.+....+   .. +.  +|+++|-|+. ...+++....|    +..++|+++++|+.+...+ ++.
T Consensus       356 ~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~N----~~~dkVtVI~gd~eev~LP-EKV  429 (637)
T 4gqb_A          356 TNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQFE----EWGSQVTVVSSDMREWVAP-EKA  429 (637)
T ss_dssp             TCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHHH----TTGGGEEEEESCTTTCCCS-SCE
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHhc----cCCCeEEEEeCcceeccCC-ccc
Confidence            445689999999999955443   33 33  5899999974 55666666664    5678999999999975444 679


Q ss_pred             eEEEecch-----hh---hHHHHHHHhccCCcEEE
Q psy7837         204 DVIYISQA-----IR---DIPWHIVDQLKLGGRML  230 (299)
Q Consensus       204 D~v~~~~~-----~~---~~~~~~~~~L~~gG~lv  230 (299)
                      |+|++--.     .+   .+.....+.|||||+++
T Consensus       430 DIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          430 DIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             EEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             CEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence            99997421     12   34456678999999763

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.55  E-value=3.5e-07  Score=81.42  Aligned_cols=114  Identities=16%  Similarity=0.164  Sum_probs=82.5

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY  144 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~  144 (299)
                      ++||++|||+++|+|.-|..+++.. ..+.+++.|+++.-+...++++.+..                            
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~-~~~~l~A~D~~~~R~~~l~~~l~r~~----------------------------  196 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTG-CCRNLAANDLSPSRIARLQKILHSYV----------------------------  196 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTT-CEEEEEEECSCHHHHHHHHHHHHHHS----------------------------
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhc-CCCcEEEEcCCHHHHHHHHHHHHHhh----------------------------
Confidence            8999999999999999999998854 45789999999988888887776620                            


Q ss_pred             HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-CCCCCeeEEEecchhh----------
Q psy7837         145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-PDAAPYDVIYISQAIR----------  213 (299)
Q Consensus       145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~~~----------  213 (299)
                                                  ...    .....++.+...|..... ...+.||.|+++++..          
T Consensus       197 ----------------------------~~~----~~~~~~v~v~~~D~~~~~~~~~~~fD~VLlDaPCSg~g~g~~r~~  244 (359)
T 4fzv_A          197 ----------------------------PEE----IRDGNQVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEE  244 (359)
T ss_dssp             ----------------------------CTT----TTTSSSEEEECCCGGGHHHHSTTCEEEEEEECCCCCHHHHTTCCT
T ss_pred             ----------------------------hhh----hccCCceEEEeCchhhcchhccccCCEEEECCccCCCCCcccccC
Confidence                                        000    012357888888876522 1236799999987632          


Q ss_pred             --------------------hHHHHHHHhccCCcEEEEEecCCCCc
Q psy7837         214 --------------------DIPWHIVDQLKLGGRMLFIKGHEDDI  239 (299)
Q Consensus       214 --------------------~~~~~~~~~L~~gG~lv~~~~~~~~~  239 (299)
                                          .+.+...++|||||+||.++-+-...
T Consensus       245 ~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~  290 (359)
T 4fzv_A          245 NNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHL  290 (359)
T ss_dssp             TCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTT
T ss_pred             hhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchh
Confidence                                12246778999999999987554433

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.52  E-value=3.4e-07  Score=78.22  Aligned_cols=45  Identities=22%  Similarity=0.363  Sum_probs=40.9

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHc----CCeEEEEeCChHHHHHHHHHH
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYM----GAKVYAIEHVKNLCKRAMKNI  173 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~----~~~v~~~D~~~~~~~~a~~~~  173 (299)
                      +.++.+|||+|||+|.++..+++.    +++|+|+|+|+.|++.|++++
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~  116 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHI  116 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHH
Confidence            578999999999999999999875    678999999999999999873

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.46  E-value=3.5e-07  Score=78.82  Aligned_cols=66  Identities=20%  Similarity=0.281  Sum_probs=56.8

Q ss_pred             ccc-ccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHH
Q psy7837          44 HNA-FMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGI-SGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        44 ~~~-~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~-~g~v~~~d~~~~~~~~a~~~  111 (299)
                      .|| +..++.+...+++.+.  +.++++|||+|||+|.+|..+++.... +++++++|+++.+++.++++
T Consensus        20 ~GQ~fL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~   87 (279)
T 3uzu_A           20 FGQNFLVDHGVIDAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQR   87 (279)
T ss_dssp             CSCCEECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHH
T ss_pred             CCccccCCHHHHHHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHh
Confidence            455 4457778888888886  889999999999999999999998765 47799999999999999887

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.46  E-value=3.3e-07  Score=79.53  Aligned_cols=66  Identities=32%  Similarity=0.282  Sum_probs=56.5

Q ss_pred             ccc-ccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          44 HNA-FMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        44 ~~~-~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .|| ++..+.+...+++.+.  +.++++|||||||+|++|..+++..   .+|+++|+++.+++.+++.+..
T Consensus        28 ~GQnfL~d~~i~~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~~---~~V~aVEid~~li~~a~~~~~~   94 (295)
T 3gru_A           28 LGQCFLIDKNFVNKAVESAN--LTKDDVVLEIGLGKGILTEELAKNA---KKVYVIEIDKSLEPYANKLKEL   94 (295)
T ss_dssp             --CCEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCGGGHHHHHHHHHH
T ss_pred             cCccccCCHHHHHHHHHhcC--CCCcCEEEEECCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHhcc
Confidence            466 5678888889988887  8899999999999999999999873   5799999999999999988753

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.46  E-value=7.1e-07  Score=86.16  Aligned_cols=65  Identities=14%  Similarity=0.096  Sum_probs=47.0

Q ss_pred             cccccCCcchHHHHHHH----HhccCCCCCEEEEEccCCCHHHHHHHHHhCC--CceEEEEeCCHHHHHHH
Q psy7837          44 HNAFMESPSDHCLVLEL----LSGHLKYGDKVLEIGTGSGYLTTLFGAMVGI--SGKVYTIEHIPELLEAA  108 (299)
Q Consensus        44 ~~~~~~~p~~~~~~~~~----l~~~~~~g~~vldiG~G~G~~~~~la~~~~~--~g~v~~~d~~~~~~~~a  108 (299)
                      .|+....+.+...|++.    +.....++.+|||.|||+|.+...+++.++.  ..+++|+|+++.+++.|
T Consensus       294 ~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LA  364 (878)
T 3s1s_A          294 EGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELL  364 (878)
T ss_dssp             CBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHH
T ss_pred             CceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHH
Confidence            46666667777777666    2223457899999999999999988877642  34577777777766666

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=98.46  E-value=5.8e-07  Score=73.80  Aligned_cols=62  Identities=24%  Similarity=0.416  Sum_probs=52.4

Q ss_pred             cCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          48 MESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        48 ~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +..+.+...+++.+.  +.++++|||+|||+|.++..+++.   .++++++|+++.+++.+++++..
T Consensus        38 ~~~~~~~~~~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~   99 (204)
T 3njr_A           38 ITKSPMRALTLAALA--PRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDT   99 (204)
T ss_dssp             CCCHHHHHHHHHHHC--CCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhcC--CCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHH
Confidence            344455566677776  789999999999999999999987   46899999999999999998865

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=98.43  E-value=8.9e-07  Score=72.42  Aligned_cols=62  Identities=21%  Similarity=0.364  Sum_probs=52.4

Q ss_pred             CcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          50 SPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        50 ~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ...+...+++.+.  ++++.+|||+|||+|.++..+++.. +.++++++|+++.+++.+++++..
T Consensus        25 ~~~i~~~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~   86 (204)
T 3e05_A           25 KQEVRAVTLSKLR--LQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLKK   86 (204)
T ss_dssp             CHHHHHHHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHC-TTSEEEEEECCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH
Confidence            3344466667765  8899999999999999999999884 467999999999999999998875

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=98.43  E-value=4.5e-06  Score=69.13  Aligned_cols=60  Identities=28%  Similarity=0.397  Sum_probs=51.3

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ...++..+.. ..++.+|||+|||+|+.+..+++.+++.++++++|+++.+++.+++++..
T Consensus        46 ~~~~l~~l~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~  105 (223)
T 3duw_A           46 QGKFLQLLVQ-IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIER  105 (223)
T ss_dssp             HHHHHHHHHH-HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            3555555542 56789999999999999999999987678999999999999999999876

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=98.43  E-value=2.3e-06  Score=72.36  Aligned_cols=60  Identities=28%  Similarity=0.395  Sum_probs=51.5

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ...++..+.. +.++.+|||+|||+|+.+..+++.+++.++++++|+++.+++.+++++..
T Consensus        51 ~~~~l~~l~~-~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~  110 (248)
T 3tfw_A           51 QGQFLALLVR-LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQL  110 (248)
T ss_dssp             HHHHHHHHHH-HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh-hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            3555555542 66789999999999999999999987678999999999999999999876

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.42  E-value=3e-07  Score=78.24  Aligned_cols=118  Identities=13%  Similarity=0.031  Sum_probs=74.3

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHh------CCC-----ceEEEEeCCH---HHHHHHHHHHHHhHHHHHHHHhhhcccCC
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMV------GIS-----GKVYTIEHIP---ELLEAARKRVKAKAETYIKRINFYGHLVY  131 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~------~~~-----g~v~~~d~~~---~~~~~a~~~l~~~~~~~~~~~~~~~~~~~  131 (299)
                      +++.+|||+|+|+|+.+..+++.+      .++     .+++++|..+   ..+..+.....                  
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p------------------  120 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWP------------------  120 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCG------------------
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcCh------------------
Confidence            456799999999999999887765      553     4899999877   44444432211                  


Q ss_pred             CCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCc---------ccCCCCeEEEEcCCCCCCCC--C
Q psy7837         132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPA---------IALAENFEFVCADGRRGYPD--A  200 (299)
Q Consensus       132 ~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~---------~~~~~~v~~~~~d~~~~~~~--~  200 (299)
                                                      .+...++++++.+...         .....+++++.+|+.+.++.  .
T Consensus       121 --------------------------------~l~~~a~~l~~~w~~~~~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~  168 (257)
T 2qy6_A          121 --------------------------------ELAPWAEQLQAQWPMPLPGCHRLLLDEGRVTLDLWFGDINELISQLDD  168 (257)
T ss_dssp             --------------------------------GGHHHHHHHHHTCCCSCSEEEEEEEC--CEEEEEEESCHHHHGGGSCG
T ss_pred             --------------------------------hHHHHHHHHHHhccccccchhheeccCCceEEEEEECcHHHHHhhccc
Confidence                                            1112222222210000         01235788999998753221  1


Q ss_pred             ---CCeeEEEecchh---------hhHHHHHHHhccCCcEEEEEe
Q psy7837         201 ---APYDVIYISQAI---------RDIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       201 ---~~fD~v~~~~~~---------~~~~~~~~~~L~~gG~lv~~~  233 (299)
                         ..||+|+.++..         ..+.+.+.++|+|||+|+..+
T Consensus       169 ~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tys  213 (257)
T 2qy6_A          169 SLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT  213 (257)
T ss_dssp             GGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESC
T ss_pred             ccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEe
Confidence               279999998632         346679999999999998644

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.40  E-value=3.2e-06  Score=70.04  Aligned_cols=59  Identities=25%  Similarity=0.312  Sum_probs=50.5

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..++..+.. ..++.+|||+|||+|+.+..+++.+++.++++++|+++.+++.+++++..
T Consensus        53 ~~~l~~l~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~  111 (225)
T 3tr6_A           53 AQLLALLVK-LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEK  111 (225)
T ss_dssp             HHHHHHHHH-HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            455555543 56788999999999999999999887678999999999999999999876

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.39  E-value=1.5e-06  Score=74.81  Aligned_cols=102  Identities=14%  Similarity=0.168  Sum_probs=77.9

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHc-------CCeEEEEeCChH--------------------------HHHHHHHHHHh
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYM-------GAKVYAIEHVKN--------------------------LCKRAMKNIRR  175 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~-------~~~v~~~D~~~~--------------------------~~~~a~~~~~~  175 (299)
                      ....+.|||+|+..|+.++.++..       +.+++++|..+.                          ..+.++++++.
T Consensus       104 ~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~  183 (282)
T 2wk1_A          104 NNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRN  183 (282)
T ss_dssp             TTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHH
T ss_pred             cCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHH
Confidence            345779999999999999887643       567999997521                          36678889887


Q ss_pred             cCCcccC-CCCeEEEEcCCCCCCC--CCCCeeEEEecchhh----hHHHHHHHhccCCcEEEEEec
Q psy7837         176 GAPAIAL-AENFEFVCADGRRGYP--DAAPYDVIYISQAIR----DIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       176 ~~~~~~~-~~~v~~~~~d~~~~~~--~~~~fD~v~~~~~~~----~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      .    +. ..+++++.||+.+..+  ..++||+|++++...    ...+.+...|+|||++++...
T Consensus       184 ~----gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv~DD~  245 (282)
T 2wk1_A          184 Y----DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVIVDDY  245 (282)
T ss_dssp             T----TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred             c----CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEEEEcCC
Confidence            3    23 3799999999875332  236899999998762    235688999999999998765

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.39  E-value=5e-07  Score=76.83  Aligned_cols=66  Identities=17%  Similarity=0.212  Sum_probs=55.2

Q ss_pred             cccc-cCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          44 HNAF-MESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        44 ~~~~-~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .||+ ...+.+...+++.+.  +.++++|||+|||+|.+|..+++..   ++++++|+++.+++.+++++..
T Consensus         7 ~GQnFL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avEid~~~~~~~~~~~~~   73 (255)
T 3tqs_A            7 FGQHFLHDSFVLQKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC---DNLALVEIDRDLVAFLQKKYNQ   73 (255)
T ss_dssp             --CCEECCHHHHHHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS---SEEEEEECCHHHHHHHHHHHTT
T ss_pred             CCcccccCHHHHHHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHhh
Confidence            4553 357788888888887  8899999999999999999999864   5799999999999999887753

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=98.38  E-value=2.3e-06  Score=71.63  Aligned_cols=63  Identities=24%  Similarity=0.339  Sum_probs=50.8

Q ss_pred             CCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          49 ESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        49 ~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..|.....+...+.  +.++.+|||+|||+|+.+..+++.. +.++++++|+++.+++.+++++..
T Consensus        55 ~~~~~~~~l~~~~~--~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~  117 (232)
T 3ntv_A           55 VDRLTLDLIKQLIR--MNNVKNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLAT  117 (232)
T ss_dssp             CCHHHHHHHHHHHH--HHTCCEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHh--hcCCCEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence            34555444444444  5688999999999999999999843 468999999999999999999876

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.37  E-value=4.2e-06  Score=70.88  Aligned_cols=113  Identities=12%  Similarity=0.021  Sum_probs=73.7

Q ss_pred             HHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc-CC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCC
Q psy7837         116 AETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM-GA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADG  193 (299)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~-~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  193 (299)
                      +.|+.+.... ..+.++.+|||+|||+|.++..++.. +. .+.++|+...+.......  .     ....++..+..++
T Consensus        60 A~KL~ei~ek-~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~--~-----~~g~~ii~~~~~~  131 (277)
T 3evf_A           60 TAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV--Q-----SLGWNIITFKDKT  131 (277)
T ss_dssp             HHHHHHHHHT-TSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC--C-----BTTGGGEEEECSC
T ss_pred             HHHHHHHHHh-CCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc--C-----cCCCCeEEEeccc
Confidence            3455555555 56678889999999999999988765 44 588888874331000000  0     0011555566665


Q ss_pred             CCCCCCCCCeeEEEecchhh----h--------HHHHHHHhccCC-cEEEEEecCC
Q psy7837         194 RRGYPDAAPYDVIYISQAIR----D--------IPWHIVDQLKLG-GRMLFIKGHE  236 (299)
Q Consensus       194 ~~~~~~~~~fD~v~~~~~~~----~--------~~~~~~~~L~~g-G~lv~~~~~~  236 (299)
                      .......++||+|+++....    +        +.+.+.++|+|| |.+++.+..+
T Consensus       132 dv~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~p  187 (277)
T 3evf_A          132 DIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAP  187 (277)
T ss_dssp             CTTTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred             eehhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCC
Confidence            43333457899999988543    2        224567899999 9999988773

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.35  E-value=6.8e-07  Score=71.16  Aligned_cols=61  Identities=18%  Similarity=0.136  Sum_probs=51.6

Q ss_pred             cchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          51 PSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        51 p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+...+++.+.  +.++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++..
T Consensus        11 ~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~   71 (178)
T 3hm2_A           11 QHVRALAISALA--PKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAIN   71 (178)
T ss_dssp             HHHHHHHHHHHC--CCTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHH
Confidence            344566666665  7899999999999999999999876 357899999999999999998876

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.35  E-value=8.6e-07  Score=84.33  Aligned_cols=94  Identities=15%  Similarity=0.050  Sum_probs=68.0

Q ss_pred             CCeEEEEcCCCcHHHHHH---HH-cC-----------CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC
Q psy7837         132 GSKVLDIGSGSGYLSALF---AY-MG-----------AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG  196 (299)
Q Consensus       132 ~~~vLDiG~G~G~~~~~l---a~-~~-----------~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  196 (299)
                      +..|||+|||+|.++...   ++ .+           .+|+++|.++.+...++.....     +...+++++.+|+.+.
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~N-----g~~d~VtVI~gd~eev  484 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVR-----TWKRRVTIIESDMRSL  484 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHH-----TTTTCSEEEESCGGGH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhc-----CCCCeEEEEeCchhhc
Confidence            468999999999997432   22 12           3799999999887776666554     5677899999999864


Q ss_pred             CCC-----CCCeeEEEecch--------hhhHHHHHHHhccCCcEEE
Q psy7837         197 YPD-----AAPYDVIYISQA--------IRDIPWHIVDQLKLGGRML  230 (299)
Q Consensus       197 ~~~-----~~~fD~v~~~~~--------~~~~~~~~~~~L~~gG~lv  230 (299)
                      ..+     .++.|+|++--.        ...+.+.+.+.|||||+++
T Consensus       485 ~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          485 PGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             ccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence            321     367999997443        1234556678999999754

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.34  E-value=2.6e-06  Score=67.80  Aligned_cols=61  Identities=21%  Similarity=0.345  Sum_probs=51.2

Q ss_pred             CCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          49 ESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        49 ~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+.+...+++.+.  +.++.+|||+|||+|.++..+++   ...+++++|+++.+++.+++++..
T Consensus        19 ~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~   79 (183)
T 2yxd_A           19 TKEEIRAVSIGKLN--LNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAK   79 (183)
T ss_dssp             CCHHHHHHHHHHHC--CCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHH
Confidence            34455566666664  78899999999999999999998   456899999999999999998876

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.33  E-value=1.4e-06  Score=71.48  Aligned_cols=45  Identities=38%  Similarity=0.586  Sum_probs=41.7

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHH
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~  172 (299)
                      ...++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++
T Consensus        74 ~~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~  118 (210)
T 3lbf_A           74 ELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRR  118 (210)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHH
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHH
Confidence            457789999999999999999999999999999999999999876

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.33  E-value=3.1e-06  Score=69.11  Aligned_cols=59  Identities=20%  Similarity=0.179  Sum_probs=50.2

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ...+++.+...+.++.+|||+|||+|.++..+++.  ...+++++|+++.+++.+++++..
T Consensus        47 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~  105 (205)
T 3grz_A           47 TQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKL--GAKSVLATDISDESMTAAEENAAL  105 (205)
T ss_dssp             HHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHH
Confidence            45666777666789999999999999999998874  235899999999999999998876

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.31  E-value=2.3e-06  Score=72.38  Aligned_cols=62  Identities=19%  Similarity=0.289  Sum_probs=52.1

Q ss_pred             CCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          49 ESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        49 ~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+.....+++.+.  +.++.+|||+|||+|.++..+++..+  .+++++|+++.+++.++++...
T Consensus        20 ~~~~~~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~l~~a~~~~~~   81 (256)
T 1nkv_A           20 FTEEKYATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEE   81 (256)
T ss_dssp             CCHHHHHHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHh
Confidence            34555566666665  78999999999999999999998874  4899999999999999988865

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.29  E-value=8.6e-07  Score=75.55  Aligned_cols=59  Identities=17%  Similarity=0.155  Sum_probs=50.1

Q ss_pred             cchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          51 PSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        51 p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      |.....+++.+.  +.++.+|||+|||+|.++..+++..   .+|+++|+++.|++.+++++..
T Consensus        31 ~~~~~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~g---~~V~gvD~S~~ml~~Ar~~~~~   89 (261)
T 3iv6_A           31 PSDRENDIFLEN--IVPGSTVAVIGASTRFLIEKALERG---ASVTVFDFSQRMCDDLAEALAD   89 (261)
T ss_dssp             CCHHHHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHh
Confidence            455567777665  7899999999999999999999864   4799999999999999988754

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.28  E-value=5.6e-06  Score=73.34  Aligned_cols=74  Identities=14%  Similarity=0.154  Sum_probs=60.3

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      .+.+|.+|||+||++|.++..++++|.+|+++|..+-. ...           ....+++++++|+....+..+++|+|+
T Consensus       208 ~l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~-~~l-----------~~~~~V~~~~~d~~~~~~~~~~~D~vv  275 (375)
T 4auk_A          208 RLANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMA-QSL-----------MDTGQVTWLREDGFKFRPTRSNISWMV  275 (375)
T ss_dssp             HSCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCC-HHH-----------HTTTCEEEECSCTTTCCCCSSCEEEEE
T ss_pred             cCCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcC-hhh-----------ccCCCeEEEeCccccccCCCCCcCEEE
Confidence            46789999999999999999999999999999986411 111           134689999999987666667899999


Q ss_pred             ecchhh
Q psy7837         208 ISQAIR  213 (299)
Q Consensus       208 ~~~~~~  213 (299)
                      ++....
T Consensus       276 sDm~~~  281 (375)
T 4auk_A          276 CDMVEK  281 (375)
T ss_dssp             ECCSSC
T ss_pred             EcCCCC
Confidence            999764

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.28  E-value=1.1e-06  Score=74.66  Aligned_cols=61  Identities=16%  Similarity=0.116  Sum_probs=50.4

Q ss_pred             cCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          48 MESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        48 ~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      ..+|.+...+++.+.  +.++++|||+|||+|.+|. +++  +...+++++|+++.+++.+++++.
T Consensus         4 L~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~~--~~~~~v~avEid~~~~~~a~~~~~   64 (252)
T 1qyr_A            4 LNDQFVIDSIVSAIN--PQKGQAMVEIGPGLAALTE-PVG--ERLDQLTVIELDRDLAARLQTHPF   64 (252)
T ss_dssp             ECCHHHHHHHHHHHC--CCTTCCEEEECCTTTTTHH-HHH--TTCSCEEEECCCHHHHHHHHTCTT
T ss_pred             cCCHHHHHHHHHhcC--CCCcCEEEEECCCCcHHHH-hhh--CCCCeEEEEECCHHHHHHHHHHhc
Confidence            456778888888886  8899999999999999999 654  332349999999999998887664

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.25  E-value=2.6e-06  Score=74.11  Aligned_cols=48  Identities=19%  Similarity=0.135  Sum_probs=44.5

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +++|.+|||+|||+|.++..+++..+  .+++++|+++.+++.+++++..
T Consensus        70 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~  117 (302)
T 3hem_A           70 LEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDE  117 (302)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHH
T ss_pred             CCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHh
Confidence            68999999999999999999999876  5899999999999999998876

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.24  E-value=1.6e-05  Score=60.68  Aligned_cols=86  Identities=15%  Similarity=0.172  Sum_probs=62.8

Q ss_pred             CCCCeEEEEcCCCc-HHHHHHHH-cCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCC-CCeeEE
Q psy7837         130 VYGSKVLDIGSGSG-YLSALFAY-MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDA-APYDVI  206 (299)
Q Consensus       130 ~~~~~vLDiG~G~G-~~~~~la~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~fD~v  206 (299)
                      .++.+|||+|||+| ..+..+++ .|.+|+++|+++..+                    .++..|+..+..+. ..||+|
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av--------------------~~v~dDiF~P~~~~Y~~~DLI   93 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHG--------------------GIVRDDITSPRMEIYRGAALI   93 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSST--------------------TEECCCSSSCCHHHHTTEEEE
T ss_pred             CCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCcccc--------------------ceEEccCCCCcccccCCcCEE
Confidence            45789999999999 59999997 899999999987432                    17888887644321 479999


Q ss_pred             EecchhhhHHHHHHHhcc-CCcEEEEEecC
Q psy7837         207 YISQAIRDIPWHIVDQLK-LGGRMLFIKGH  235 (299)
Q Consensus       207 ~~~~~~~~~~~~~~~~L~-~gG~lv~~~~~  235 (299)
                      +...+...+...+.++-+ -|.-+++....
T Consensus        94 YsirPP~El~~~i~~lA~~v~adliI~pL~  123 (153)
T 2k4m_A           94 YSIRPPAEIHSSLMRVADAVGARLIIKPLT  123 (153)
T ss_dssp             EEESCCTTTHHHHHHHHHHHTCEEEEECBT
T ss_pred             EEcCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            887777666655555443 36666666443

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.24  E-value=1.6e-06  Score=73.31  Aligned_cols=60  Identities=22%  Similarity=0.260  Sum_probs=49.8

Q ss_pred             CCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          49 ESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        49 ~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      .++.+...+++.+.  +.++++|||+|||+|.++..+++..   ++++++|+++.+++.+++++.
T Consensus        14 ~d~~~~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~   73 (244)
T 1qam_A           14 TSKHNIDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLV   73 (244)
T ss_dssp             CCHHHHHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhc
Confidence            45566666666554  6789999999999999999999875   579999999999999887764

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.23  E-value=2.9e-06  Score=70.60  Aligned_cols=45  Identities=40%  Similarity=0.538  Sum_probs=41.2

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHH
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~  172 (299)
                      ...++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++
T Consensus        67 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~  111 (231)
T 1vbf_A           67 DLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKL  111 (231)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHH
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHH
Confidence            456788999999999999999999999999999999999998865

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.23  E-value=2e-06  Score=74.44  Aligned_cols=66  Identities=27%  Similarity=0.364  Sum_probs=54.6

Q ss_pred             ccccc-CCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          44 HNAFM-ESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        44 ~~~~~-~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .||+. ..+.+...+++.+.  +.++++|||+|||+|.++..+++..   .+++++|+++.+++.+++++..
T Consensus         6 ~gq~fl~d~~i~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~---~~v~~vD~~~~~~~~a~~~~~~   72 (285)
T 1zq9_A            6 IGQHILKNPLIINSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQG   72 (285)
T ss_dssp             --CCEECCHHHHHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTT
T ss_pred             CCcCccCCHHHHHHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHh
Confidence            34544 47778888888876  7899999999999999999999874   4799999999999999987753

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.23  E-value=1.4e-06  Score=74.60  Aligned_cols=64  Identities=22%  Similarity=0.186  Sum_probs=54.7

Q ss_pred             cccc-cCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          44 HNAF-MESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        44 ~~~~-~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      .||+ ..++.+...+++.+.  +.++ +|||+|||+|.+|..+++..   .+|+++|+++.+++.+++++.
T Consensus        25 ~GQnfL~d~~i~~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~~~~~l~~~~~   89 (271)
T 3fut_A           25 FGQNFLVSEAHLRRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLRLRPVLEETLS   89 (271)
T ss_dssp             SSCCEECCHHHHHHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTT
T ss_pred             CCccccCCHHHHHHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcC
Confidence            4564 457888888988887  8889 99999999999999999875   479999999999999887664

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.23  E-value=2.7e-06  Score=68.43  Aligned_cols=59  Identities=10%  Similarity=-0.049  Sum_probs=48.7

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+.....+.+.+.++|||+|||+|-++..++...+. .+++++|+++.+++.+++++..
T Consensus        37 d~fY~~~~~~l~~~~~VLDlGCG~GplAl~l~~~~p~-a~~~A~Di~~~~leiar~~~~~   95 (200)
T 3fzg_A           37 NDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENEK-IIYHAYDIDRAEIAFLSSIIGK   95 (200)
T ss_dssp             HHHHHHHHHHSCCCSEEEEETCTTHHHHHHHHCSSCC-CEEEEECSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCCCeEEEecCCCCHHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHh
Confidence            3444444555788999999999999999998776544 4999999999999999999876

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.22  E-value=1.5e-06  Score=72.24  Aligned_cols=50  Identities=32%  Similarity=0.509  Sum_probs=45.4

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ++++++|||+|||+|.++..+++.+++.++++++|+++.+++.++++...
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~  120 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE  120 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc
Confidence            67899999999999999999999988778999999999999988877654

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.22  E-value=2.3e-06  Score=70.09  Aligned_cols=52  Identities=17%  Similarity=0.046  Sum_probs=43.4

Q ss_pred             HHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Q psy7837          56 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV  112 (299)
Q Consensus        56 ~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l  112 (299)
                      ..++.+.  +.++.+|||+|||+|..+..+++. +  .+|+|+|+++.+++.+++..
T Consensus        13 ~~~~~l~--~~~~~~vLD~GCG~G~~~~~la~~-g--~~V~gvD~S~~~l~~a~~~~   64 (203)
T 1pjz_A           13 QYWSSLN--VVPGARVLVPLCGKSQDMSWLSGQ-G--YHVVGAELSEAAVERYFTER   64 (203)
T ss_dssp             HHHHHHC--CCTTCEEEETTTCCSHHHHHHHHH-C--CEEEEEEECHHHHHHHHHHH
T ss_pred             HHHHhcc--cCCCCEEEEeCCCCcHhHHHHHHC-C--CeEEEEeCCHHHHHHHHHHc
Confidence            3444443  678999999999999999999986 3  37999999999999998765

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.21  E-value=2.3e-06  Score=74.54  Aligned_cols=69  Identities=26%  Similarity=0.310  Sum_probs=54.4

Q ss_pred             cccccccc-CCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          41 NIGHNAFM-ESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        41 ~~~~~~~~-~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ....||.. .++.+...+++.+.  +.++++|||+|||+|.++..+++.   .++++++|+++.+++.+++++..
T Consensus        17 ~k~~Gq~fl~~~~i~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~   86 (299)
T 2h1r_A           17 LYFQGQHLLKNPGILDKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLY   86 (299)
T ss_dssp             ------CEECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHH
T ss_pred             hhccccceecCHHHHHHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHH
Confidence            33456655 47778888888876  789999999999999999999876   35899999999999999988764

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.21  E-value=2e-06  Score=72.28  Aligned_cols=45  Identities=24%  Similarity=0.284  Sum_probs=40.7

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCC--eEEEEeCChHHHHHHHHHH
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGA--KVYAIEHVKNLCKRAMKNI  173 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~--~v~~~D~~~~~~~~a~~~~  173 (299)
                      +.++.+|||+|||+|++++.+++.+.  +|+++|+++.+++.|++|+
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~   65 (244)
T 3gnl_A           19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQV   65 (244)
T ss_dssp             CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence            46788999999999999999999863  6999999999999999984

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.21  E-value=2.1e-06  Score=71.33  Aligned_cols=45  Identities=31%  Similarity=0.420  Sum_probs=40.6

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHH
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNI  173 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~  173 (299)
                      +.++.+|||+|||+|++++.+++.+  .+|+++|+++.+++.|++|+
T Consensus        13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~   59 (225)
T 3kr9_A           13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNV   59 (225)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence            4567899999999999999999986  36999999999999999984

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=98.21  E-value=5.8e-06  Score=65.10  Aligned_cols=59  Identities=15%  Similarity=0.114  Sum_probs=47.6

Q ss_pred             hHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          53 DHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        53 ~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +...+++.+...+.++.+|||+|||+|.++..+++...   .++++|+++.+++.+++++..
T Consensus        27 ~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~   85 (171)
T 1ws6_A           27 LRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRR   85 (171)
T ss_dssp             HHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHH
Confidence            44555666553344889999999999999999998743   399999999999999998876

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.19  E-value=2.6e-06  Score=71.23  Aligned_cols=45  Identities=16%  Similarity=0.369  Sum_probs=40.5

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~  172 (299)
                      .+.||.+|||+|||+|+++..+++.   ..+|+++|+++.+++.++++
T Consensus        74 ~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~  121 (233)
T 4df3_A           74 PVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTV  121 (233)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHH
T ss_pred             CCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Confidence            5789999999999999999999987   35799999999999988764

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.19  E-value=2.6e-06  Score=72.80  Aligned_cols=58  Identities=34%  Similarity=0.481  Sum_probs=49.5

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHH------HHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPE------LLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~------~~~~a~~~l~~  114 (299)
                      ..+++.+.  ++++.+|||+|||+|.++..+++..++.++++++|+++.      +++.+++++..
T Consensus        33 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~   96 (275)
T 3bkx_A           33 LAIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLA   96 (275)
T ss_dssp             HHHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHT
T ss_pred             HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHh
Confidence            44555554  789999999999999999999999877789999999997      88988888765

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.19  E-value=1.2e-06  Score=74.23  Aligned_cols=64  Identities=27%  Similarity=0.356  Sum_probs=53.5

Q ss_pred             ccc-ccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837          44 HNA-FMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        44 ~~~-~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~  111 (299)
                      .|| +..++.+...+++.+.  +.++++|||+|||+|.+|..+++. + ..+++++|+++.+++.++++
T Consensus         9 ~GQnfl~d~~i~~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~-~~~v~avEid~~~~~~~~~~   73 (249)
T 3ftd_A            9 FGQHLLVSEGVLKKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH-P-LKKLYVIELDREMVENLKSI   73 (249)
T ss_dssp             CCSSCEECHHHHHHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS-C-CSEEEEECCCHHHHHHHTTS
T ss_pred             ccccccCCHHHHHHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHhc
Confidence            455 4456778888888876  788999999999999999999876 2 36899999999999988765

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.18  E-value=3.8e-06  Score=68.98  Aligned_cols=59  Identities=27%  Similarity=0.333  Sum_probs=49.4

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..++..+.. ..++.+|||+|||+|+.+..+++.+++.++++++|+++.+++.+++++..
T Consensus        45 ~~~l~~l~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~  103 (210)
T 3c3p_A           45 GRLLYLLAR-IKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHD  103 (210)
T ss_dssp             HHHHHHHHH-HHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-hhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            445555442 45678999999999999999999886678999999999999999998875

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.17  E-value=2.9e-06  Score=75.47  Aligned_cols=107  Identities=16%  Similarity=0.171  Sum_probs=78.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcC-CeEEEEeCChHHHHHHHHHHHhcCCcc---cCCCCeEEEEcCCCCCC----CCCCC
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMG-AKVYAIEHVKNLCKRAMKNIRRGAPAI---ALAENFEFVCADGRRGY----PDAAP  202 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~---~~~~~v~~~~~d~~~~~----~~~~~  202 (299)
                      +.++||-||.|.|.....+.+.. .+|+.+|+++..++.+++.+.......   ....+++++.+|+....    ...++
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~  284 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE  284 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence            56899999999999999998874 569999999999999998764311000   11246899999987532    12367


Q ss_pred             eeEEEecchh----------------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         203 YDVIYISQAI----------------RDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       203 fD~v~~~~~~----------------~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      ||+|+.+..-                ..+.+.+.+.|+|||+++.......
T Consensus       285 yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~  335 (381)
T 3c6k_A          285 FDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVN  335 (381)
T ss_dssp             EEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETT
T ss_pred             eeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCc
Confidence            9999988421                1233578899999999998765443

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.17  E-value=2.9e-06  Score=70.67  Aligned_cols=45  Identities=33%  Similarity=0.492  Sum_probs=40.7

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCC--eEEEEeCChHHHHHHHHHH
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGA--KVYAIEHVKNLCKRAMKNI  173 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~--~v~~~D~~~~~~~~a~~~~  173 (299)
                      +.++.+|+|+|||+|++++.+++.+.  +|+++|+++.+++.|++|+
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~   65 (230)
T 3lec_A           19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNV   65 (230)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence            45788999999999999999999863  6999999999999999984

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=98.17  E-value=5.8e-06  Score=65.77  Aligned_cols=59  Identities=14%  Similarity=0.110  Sum_probs=48.2

Q ss_pred             hHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          53 DHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        53 ~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +...+++.+.. ..++.+|||+|||+|.++..+++.  ...+++++|+++.+++.+++++..
T Consensus        18 ~~~~~~~~l~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~   76 (177)
T 2esr_A           18 VRGAIFNMIGP-YFNGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIM   76 (177)
T ss_dssp             CHHHHHHHHCS-CCCSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHh-hcCCCeEEEeCCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHH
Confidence            34555555542 567899999999999999998876  236899999999999999998875

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.17  E-value=2.8e-06  Score=70.08  Aligned_cols=44  Identities=23%  Similarity=0.312  Sum_probs=37.8

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHH
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMK  171 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~  171 (299)
                      .+.++.+|||+|||+|.++..+++..  .+|+++|+|+.+++.+.+
T Consensus        54 ~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~   99 (210)
T 1nt2_A           54 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLE   99 (210)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHH
Confidence            45678999999999999999998774  689999999999876653

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.16  E-value=2.5e-06  Score=72.42  Aligned_cols=113  Identities=14%  Similarity=-0.015  Sum_probs=71.5

Q ss_pred             HHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc-CC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCC
Q psy7837         116 AETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM-GA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADG  193 (299)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~-~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  193 (299)
                      +-|+.+..... .+.++.+|||+|||.|.++..++.. +. .|+++|+...+...+... +      ....++.....+.
T Consensus        76 AfKL~ei~eK~-~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~------~~g~~ii~~~~~~  147 (282)
T 3gcz_A           76 SAKLRWMEERG-YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-T------TLGWNLIRFKDKT  147 (282)
T ss_dssp             HHHHHHHHHTT-SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-C------BTTGGGEEEECSC
T ss_pred             HHHHHHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-c------cCCCceEEeeCCc
Confidence            44555555444 6778899999999999999988854 54 489999975432111100 0      0112333344332


Q ss_pred             CCCCCCCCCeeEEEecchhh----h--------HHHHHHHhccCC--cEEEEEecCC
Q psy7837         194 RRGYPDAAPYDVIYISQAIR----D--------IPWHIVDQLKLG--GRMLFIKGHE  236 (299)
Q Consensus       194 ~~~~~~~~~fD~v~~~~~~~----~--------~~~~~~~~L~~g--G~lv~~~~~~  236 (299)
                      ........++|+|+++....    .        +.+-+..+|+||  |.+++.+..+
T Consensus       148 dv~~l~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~p  204 (282)
T 3gcz_A          148 DVFNMEVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCP  204 (282)
T ss_dssp             CGGGSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCC
T ss_pred             chhhcCCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecC
Confidence            22122346899999998753    1        223456899999  9999998773

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.16  E-value=1.9e-05  Score=74.07  Aligned_cols=136  Identities=17%  Similarity=0.102  Sum_probs=87.3

Q ss_pred             cccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHH
Q psy7837          44 HNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRI  123 (299)
Q Consensus        44 ~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~  123 (299)
                      .|++...+.+...|++.+.  ..+|++|+|-+||+|.+-..+.+.+.....      ..    ..++.            
T Consensus       196 ~GqfyTP~~Vv~lmv~l~~--p~~~~~I~DPacGsGgfL~~a~~~l~~~~~------~~----~~~~~------------  251 (530)
T 3ufb_A          196 SGEFYTPRPVVRFMVEVMD--PQLGESVLDPACGTGGFLVEAFEHLERQCK------TV----EDREV------------  251 (530)
T ss_dssp             CCCCCCCHHHHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTCC------SH----HHHHH------------
T ss_pred             CceECCcHHHHHHHHHhhc--cCCCCEEEeCCCCcchHHHHHHHHHHHhcc------ch----hHHHH------------
Confidence            4677777777777777776  788999999999999987766654432110      00    00000            


Q ss_pred             hhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC----CC
Q psy7837         124 NFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY----PD  199 (299)
Q Consensus       124 ~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~  199 (299)
                                                 .....++|+|+++.+...|+-|+--     .+.....+..+|.....    ..
T Consensus       252 ---------------------------~~~~~i~G~E~~~~~~~la~mNl~l-----hg~~~~~I~~~dtL~~~~~~~~~  299 (530)
T 3ufb_A          252 ---------------------------LQESSIFGGEAKSLPYLLVQMNLLL-----HGLEYPRIDPENSLRFPLREMGD  299 (530)
T ss_dssp             ---------------------------HHTCCEEEECCSHHHHHHHHHHHHH-----HTCSCCEEECSCTTCSCGGGCCG
T ss_pred             ---------------------------HhhhhhhhhhccHHHHHHHHHHHHh-----cCCccccccccccccCchhhhcc
Confidence                                       0123577777777777777776654     23445567777765322    12


Q ss_pred             CCCeeEEEecchhh----------------------hHHHHHHHhcc-------CCcEEEEEecC
Q psy7837         200 AAPYDVIYISQAIR----------------------DIPWHIVDQLK-------LGGRMLFIKGH  235 (299)
Q Consensus       200 ~~~fD~v~~~~~~~----------------------~~~~~~~~~L~-------~gG~lv~~~~~  235 (299)
                      ..+||+|++|+++.                      .+...+.+.||       +||++.+..++
T Consensus       300 ~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~  364 (530)
T 3ufb_A          300 KDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPN  364 (530)
T ss_dssp             GGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEH
T ss_pred             cccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecc
Confidence            25799999999862                      11235566665       79999998764

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=98.16  E-value=3.7e-06  Score=69.70  Aligned_cols=46  Identities=22%  Similarity=0.303  Sum_probs=40.9

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHH
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNI  173 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~  173 (299)
                      ...++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.+++++
T Consensus        55 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~  103 (221)
T 3u81_A           55 REYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQML  103 (221)
T ss_dssp             HHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHH
T ss_pred             HhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHH
Confidence            3456899999999999999999984   679999999999999999873

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.16  E-value=7.9e-06  Score=72.79  Aligned_cols=64  Identities=27%  Similarity=0.249  Sum_probs=54.4

Q ss_pred             CCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          49 ESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        49 ~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+.+.+.++..+.  +.++.+|||+|||+|.++..++...++..+++++|+++.+++.+++++..
T Consensus       187 l~~~la~~l~~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~  250 (354)
T 3tma_A          187 LTPVLAQALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALA  250 (354)
T ss_dssp             CCHHHHHHHHHHTT--CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHhC--CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHH
Confidence            44555556665554  78999999999999999999999886678899999999999999999876

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=98.14  E-value=8.2e-06  Score=65.75  Aligned_cols=61  Identities=16%  Similarity=0.107  Sum_probs=48.0

Q ss_pred             chHHHHHHHHhcc-CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          52 SDHCLVLELLSGH-LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        52 ~~~~~~~~~l~~~-~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .+...+++.+... ..++.+|||+|||+|.++..+++.  ...+++++|+++.+++.+++++..
T Consensus        28 ~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~   89 (189)
T 3p9n_A           28 RVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSR--GAASVLFVESDQRSAAVIARNIEA   89 (189)
T ss_dssp             HHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEECCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHC--CCCeEEEEECCHHHHHHHHHHHHH
Confidence            3445566666532 168899999999999999977764  235899999999999999999876

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.14  E-value=4.4e-06  Score=69.70  Aligned_cols=49  Identities=22%  Similarity=0.417  Sum_probs=44.2

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.++.+|||+|||+|.++..+++..+ .++++++|+++.+++.++++...
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~  120 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAE  120 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTT
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhc
Confidence            57899999999999999999999987 68999999999999998887654

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=98.14  E-value=8.5e-06  Score=67.72  Aligned_cols=50  Identities=30%  Similarity=0.435  Sum_probs=45.2

Q ss_pred             ccCCCCCEEEEEccC-CCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          63 GHLKYGDKVLEIGTG-SGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        63 ~~~~~g~~vldiG~G-~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..++++.+|||+||| +|.++..+++..  ..+++++|+++.+++.+++++..
T Consensus        51 ~~~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~  101 (230)
T 3evz_A           51 TFLRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIER  101 (230)
T ss_dssp             TTCCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHH
T ss_pred             hhcCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHH
Confidence            347899999999999 999999999886  46899999999999999999876

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.14  E-value=7e-06  Score=70.89  Aligned_cols=50  Identities=26%  Similarity=0.460  Sum_probs=42.0

Q ss_pred             ccCCCCCEEEEEccCCCHHHHH-HHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          63 GHLKYGDKVLEIGTGSGYLTTL-FGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        63 ~~~~~g~~vldiG~G~G~~~~~-la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+++|++|||||||+|.++.. +++..  .++|+++|+++.+++.|++++..
T Consensus       118 a~l~~g~rVLDIGcG~G~~ta~~lA~~~--ga~V~gIDis~~~l~~Ar~~~~~  168 (298)
T 3fpf_A          118 GRFRRGERAVFIGGGPLPLTGILLSHVY--GMRVNVVEIEPDIAELSRKVIEG  168 (298)
T ss_dssp             TTCCTTCEEEEECCCSSCHHHHHHHHTT--CCEEEEEESSHHHHHHHHHHHHH
T ss_pred             cCCCCcCEEEEECCCccHHHHHHHHHcc--CCEEEEEECCHHHHHHHHHHHHh
Confidence            3589999999999999877654 45433  46999999999999999999876

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.14  E-value=5e-06  Score=68.38  Aligned_cols=45  Identities=38%  Similarity=0.569  Sum_probs=40.4

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcC---CeEEEEeCChHHHHHHHHH
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMG---AKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~---~~v~~~D~~~~~~~~a~~~  172 (299)
                      ...++.+|||+|||+|.++..+++.+   .+|+++|+++.+++.++++
T Consensus        74 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~  121 (215)
T 2yxe_A           74 DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERT  121 (215)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence            45678999999999999999999875   7899999999999998875

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.13  E-value=6.5e-06  Score=71.11  Aligned_cols=69  Identities=23%  Similarity=0.298  Sum_probs=51.6

Q ss_pred             ccccccCCcchHHHHHHHHhccC--CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          43 GHNAFMESPSDHCLVLELLSGHL--KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        43 ~~~~~~~~p~~~~~~~~~l~~~~--~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+..+..|.. ..+++.+...+  .++.+|||+|||+|..+..++..  +..+++++|+++.+++.+++++..
T Consensus        98 ~~~~lipr~~t-e~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~  168 (284)
T 1nv8_A           98 EEGVFVPRPET-EELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAER  168 (284)
T ss_dssp             CTTSCCCCTTH-HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCceecChhH-HHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHH
Confidence            33444444433 33444433322  37789999999999999999988  567999999999999999999876

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.13  E-value=2.8e-06  Score=70.96  Aligned_cols=36  Identities=22%  Similarity=0.210  Sum_probs=29.4

Q ss_pred             cCCCCCEEEEEccCCCHHHHHHHHH--hCC-CceEEEEe
Q psy7837          64 HLKYGDKVLEIGTGSGYLTTLFGAM--VGI-SGKVYTIE   99 (299)
Q Consensus        64 ~~~~g~~vldiG~G~G~~~~~la~~--~~~-~g~v~~~d   99 (299)
                      .++||++|+|+||++|.|+++.++.  ++. .|.++++|
T Consensus        70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D  108 (269)
T 2px2_A           70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGP  108 (269)
T ss_dssp             SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCST
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccc
Confidence            4799999999999999999999997  543 45555555

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.13  E-value=4.6e-06  Score=71.08  Aligned_cols=58  Identities=16%  Similarity=0.381  Sum_probs=47.9

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ...+++.+. .+.++.+|||+|||+|.++..+++.  ..++++++|+++.+++.+++++..
T Consensus        34 ~~~~l~~l~-~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~   91 (267)
T 3kkz_A           34 TLKALSFID-NLTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQ   91 (267)
T ss_dssp             HHHHHTTCC-CCCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcc-cCCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHH
Confidence            344444443 4678999999999999999999987  346899999999999999998876

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.12  E-value=1e-05  Score=70.30  Aligned_cols=46  Identities=26%  Similarity=0.285  Sum_probs=44.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHh
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRR  175 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~  175 (299)
                      .++..|||++||+|.++..+++.|.+++++|+++.+++.++++++.
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~  279 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFAR  279 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999999999999999876

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.12  E-value=1.1e-05  Score=67.73  Aligned_cols=65  Identities=32%  Similarity=0.530  Sum_probs=53.9

Q ss_pred             ccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          45 NAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        45 ~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ...+..|.....+++.+.  +.++++|||+|||+|.++..+++.   .++++++|+++.+++.+++++..
T Consensus        71 ~~~~~~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~  135 (248)
T 2yvl_A           71 KTQIIYPKDSFYIALKLN--LNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKK  135 (248)
T ss_dssp             SSCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHH
T ss_pred             CCCcccchhHHHHHHhcC--CCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHH
Confidence            334455666666666665  789999999999999999999988   46899999999999999988865

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.12  E-value=9.7e-06  Score=70.32  Aligned_cols=50  Identities=10%  Similarity=0.108  Sum_probs=45.0

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..++.+|||+|||+|.++..+++.+.+..+++++|+++.+++.+++++..
T Consensus        34 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~   83 (299)
T 3g5t_A           34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEG   83 (299)
T ss_dssp             CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            35899999999999999999998765668999999999999999998866

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.12  E-value=1.2e-05  Score=64.29  Aligned_cols=60  Identities=23%  Similarity=0.443  Sum_probs=50.1

Q ss_pred             CcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          50 SPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        50 ~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ...+...+++.+.  +.++.+|||+|||+|.++..+++..   .+++++|+++.+++.+++++..
T Consensus        18 ~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~   77 (192)
T 1l3i_A           18 AMEVRCLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQR   77 (192)
T ss_dssp             CHHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHH
Confidence            3444555666664  7899999999999999999998876   5899999999999999988865

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.12  E-value=5.7e-06  Score=68.80  Aligned_cols=45  Identities=33%  Similarity=0.455  Sum_probs=40.5

Q ss_pred             cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837          64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~  111 (299)
                      .+.++.+|||+|||+|.++..+++.   ..+++++|+++.+++.++++
T Consensus        45 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~   89 (226)
T 3m33_A           45 LLTPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARAN   89 (226)
T ss_dssp             HCCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHH
T ss_pred             cCCCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHh
Confidence            3678999999999999999999987   35899999999999998877

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.11  E-value=6.5e-06  Score=69.00  Aligned_cols=60  Identities=20%  Similarity=0.333  Sum_probs=50.9

Q ss_pred             CcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          50 SPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        50 ~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ++.....+++.+.  ++++.+|||+|||+|.++..+++..+   +++++|+++.+++.+++.+..
T Consensus         6 ~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~   65 (239)
T 1xxl_A            6 HHHSLGLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQE   65 (239)
T ss_dssp             CHHHHHHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHH
T ss_pred             cCCCcchHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHH
Confidence            3444567777777  89999999999999999999988753   799999999999999988765

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.11  E-value=1.3e-05  Score=68.93  Aligned_cols=48  Identities=17%  Similarity=0.169  Sum_probs=43.2

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.++.+|||+|||+|.++..+++..+.  +++++|+++.+++.+++.+..
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~gvd~s~~~~~~a~~~~~~  109 (287)
T 1kpg_A           62 LQPGMTLLDVGCGWGATMMRAVEKYDV--NVVGLTLSKNQANHVQQLVAN  109 (287)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCcCEEEEECCcccHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHh
Confidence            578999999999999999999977653  899999999999999988765

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=98.10  E-value=2.5e-05  Score=66.22  Aligned_cols=58  Identities=38%  Similarity=0.532  Sum_probs=48.9

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ...+++.+...++++.+|||+|||+|.++..+++. +.  +++++|+++.+++.++++...
T Consensus       107 t~~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~-g~--~v~gvDi~~~~v~~a~~n~~~  164 (254)
T 2nxc_A          107 TRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL-GG--KALGVDIDPMVLPQAEANAKR  164 (254)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT-TC--EEEEEESCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHh-CC--eEEEEECCHHHHHHHHHHHHH
Confidence            34556666656789999999999999999998875 33  899999999999999998876

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=98.10  E-value=3.9e-06  Score=68.66  Aligned_cols=48  Identities=23%  Similarity=0.394  Sum_probs=31.8

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++..
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~   76 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAER   76 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC-------------
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHH
Confidence            788999999999999999999875 456899999999999999988765

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.09  E-value=5.1e-06  Score=69.50  Aligned_cols=45  Identities=36%  Similarity=0.623  Sum_probs=40.7

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcC-CeEEEEeCChHHHHHHHHH
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMG-AKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~-~~v~~~D~~~~~~~~a~~~  172 (299)
                      ...++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.++++
T Consensus        88 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~  133 (235)
T 1jg1_A           88 NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRN  133 (235)
T ss_dssp             TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHH
T ss_pred             CCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHH
Confidence            45678899999999999999999886 8899999999999999875

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.09  E-value=8.6e-06  Score=67.08  Aligned_cols=58  Identities=19%  Similarity=0.217  Sum_probs=47.2

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ...+++.+.  ..++.+|||+|||+|.++..+++..+ ..+++++|+++.+++.+++++..
T Consensus        18 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~   75 (217)
T 3jwh_A           18 MNGVVAALK--QSNARRVIDLGCGQGNLLKILLKDSF-FEQITGVDVSYRSLEIAQERLDR   75 (217)
T ss_dssp             HHHHHHHHH--HTTCCEEEEETCTTCHHHHHHHHCTT-CSEEEEEESCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHH--hcCCCEEEEeCCCCCHHHHHHHhhCC-CCEEEEEECCHHHHHHHHHHHHH
Confidence            345555554  46889999999999999999998643 36899999999999999988753

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.09  E-value=7e-06  Score=70.74  Aligned_cols=63  Identities=17%  Similarity=0.255  Sum_probs=51.5

Q ss_pred             cchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          51 PSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        51 p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.....+++.+. .+.++.+|||+|||+|.++..+++..+...+++++|+++.+++.+++.+..
T Consensus         7 ~~~~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~   69 (284)
T 3gu3_A            7 DDYVSFLVNTVW-KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL   69 (284)
T ss_dssp             HHHHHHHHHTTS-CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHh-ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHh
Confidence            344455555553 367899999999999999999998876557999999999999999988765

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=98.09  E-value=1.5e-05  Score=63.69  Aligned_cols=59  Identities=17%  Similarity=0.129  Sum_probs=46.9

Q ss_pred             hHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          53 DHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        53 ~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +...+++.+. ...++.+|||+|||+|.++..+++.  ...+++++|+++.+++.+++++..
T Consensus        31 ~~~~~~~~l~-~~~~~~~vLD~GcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~   89 (187)
T 2fhp_A           31 VKESIFNMIG-PYFDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAI   89 (187)
T ss_dssp             HHHHHHHHHC-SCCSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-hhcCCCCEEEeCCccCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHH
Confidence            3444555553 2468899999999999999988773  236899999999999999998876

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.09  E-value=1e-05  Score=68.94  Aligned_cols=55  Identities=20%  Similarity=0.242  Sum_probs=48.4

Q ss_pred             cchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy7837          51 PSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK  110 (299)
Q Consensus        51 p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~  110 (299)
                      |-+...+++.|.  +++|..++|++||.|..|..+++.   .|+|+|+|.++.+++.+++
T Consensus         8 pVLl~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~   62 (285)
T 1wg8_A            8 PVLYQEALDLLA--VRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG   62 (285)
T ss_dssp             CTTHHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH
T ss_pred             hHHHHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh
Confidence            445678888887  899999999999999999999987   5789999999999998887

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=98.08  E-value=7e-06  Score=68.20  Aligned_cols=43  Identities=9%  Similarity=0.091  Sum_probs=38.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHH
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNI  173 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~  173 (299)
                      ++.+|||+|||+|+.+..+++.   +.+|+++|+++.+++.+++++
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~  101 (221)
T 3dr5_A           56 GSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALF  101 (221)
T ss_dssp             TCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHH
T ss_pred             CCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH
Confidence            3459999999999999999874   678999999999999999873

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.08  E-value=9.9e-06  Score=68.66  Aligned_cols=57  Identities=26%  Similarity=0.496  Sum_probs=49.1

Q ss_pred             hHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          53 DHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        53 ~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ....+++.+.  +.++.+|||+|||+|.++..+++..+   +++++|+++.+++.+++.+..
T Consensus        25 ~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~   81 (260)
T 1vl5_A           25 DLAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEG   81 (260)
T ss_dssp             CHHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHh
Confidence            3467777776  77999999999999999999998753   799999999999999988765

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.08  E-value=7.7e-06  Score=69.06  Aligned_cols=60  Identities=20%  Similarity=0.382  Sum_probs=49.0

Q ss_pred             chHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          52 SDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        52 ~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .....+++.+. .+.++.+|||+|||+|.++..+++..+  ++++++|+++.+++.+++++..
T Consensus        32 ~~~~~~l~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~   91 (257)
T 3f4k_A           32 EATRKAVSFIN-ELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVK   91 (257)
T ss_dssp             HHHHHHHTTSC-CCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-cCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHH
Confidence            33444444443 367899999999999999999999874  3899999999999999998876

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.08  E-value=1.5e-05  Score=67.39  Aligned_cols=59  Identities=25%  Similarity=0.272  Sum_probs=46.9

Q ss_pred             HHHHHHHhccCC----CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLK----YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~~----~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+++.+...+.    ++.+|||+|||+|.++..+++... ..+++++|+++.+++.+++++..
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~  111 (254)
T 2h00_A           49 IHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQ  111 (254)
T ss_dssp             HHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHH
Confidence            344444444333    578999999999999999888752 36899999999999999998876

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.08  E-value=1.1e-05  Score=64.76  Aligned_cols=57  Identities=14%  Similarity=0.262  Sum_probs=48.6

Q ss_pred             hHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          53 DHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        53 ~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ....+++.+.  .+++.+|||+|||+|.++..+++.   ..+++++|+++.+++.+++++..
T Consensus        40 ~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~   96 (194)
T 1dus_A           40 GTKILVENVV--VDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKL   96 (194)
T ss_dssp             HHHHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHH
Confidence            4456666664  678999999999999999999887   45899999999999999988865

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=98.07  E-value=6.2e-06  Score=66.82  Aligned_cols=46  Identities=20%  Similarity=0.369  Sum_probs=40.7

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHH
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNI  173 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~  173 (299)
                      .+.++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.+++++
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~   67 (197)
T 3eey_A           19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKL   67 (197)
T ss_dssp             HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHH
T ss_pred             cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence            4567899999999999999999886   358999999999999998873

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.07  E-value=1.2e-05  Score=65.70  Aligned_cols=66  Identities=18%  Similarity=0.182  Sum_probs=50.6

Q ss_pred             ccCCcchHHHHHHHHhc-cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          47 FMESPSDHCLVLELLSG-HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        47 ~~~~p~~~~~~~~~l~~-~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ....+.....++..+.. ...++.+|||+|||+|.++..+++. + .++++++|+++.+++.+++++..
T Consensus        28 ~~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~~   94 (207)
T 1wy7_A           28 YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL-G-AKEVICVEVDKEAVDVLIENLGE   94 (207)
T ss_dssp             CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHTGG
T ss_pred             ecCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHH
Confidence            33445555666655432 2457899999999999999999886 2 24799999999999999988765

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.06  E-value=8.7e-06  Score=73.29  Aligned_cols=52  Identities=23%  Similarity=0.166  Sum_probs=44.2

Q ss_pred             hhhcccCCCCeEEEEcCCCcHHHHHHHHc-CCe-EEEEeCChHHHHHHHHHHHh
Q psy7837         124 NFYGHLVYGSKVLDIGSGSGYLSALFAYM-GAK-VYAIEHVKNLCKRAMKNIRR  175 (299)
Q Consensus       124 ~~~~~~~~~~~vLDiG~G~G~~~~~la~~-~~~-v~~~D~~~~~~~~a~~~~~~  175 (299)
                      .....+.++.+|||||||+|.+++.++.. ++. ++|+|+++.+++.|+++.+.
T Consensus       166 l~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~  219 (438)
T 3uwp_A          166 IDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE  219 (438)
T ss_dssp             HHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            33446788999999999999999998864 664 99999999999999988654

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.06  E-value=6.8e-06  Score=72.08  Aligned_cols=45  Identities=33%  Similarity=0.593  Sum_probs=39.8

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCC---eEEEEeCChHHHHHHHHH
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGA---KVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~---~v~~~D~~~~~~~~a~~~  172 (299)
                      .+.++.+|||+|||+|.++..+++.+.   +|+++|+++.+++.++++
T Consensus        72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~  119 (317)
T 1dl5_A           72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRN  119 (317)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHH
Confidence            456789999999999999999998754   499999999999998875

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=98.05  E-value=1e-05  Score=68.42  Aligned_cols=49  Identities=27%  Similarity=0.410  Sum_probs=43.5

Q ss_pred             hhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837         124 NFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       124 ~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~  172 (299)
                      .......++.+|||+|||+|.++..+++.   +.+++++|+++.+++.++++
T Consensus        86 ~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~  137 (255)
T 3mb5_A           86 VAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWEN  137 (255)
T ss_dssp             HHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH
T ss_pred             HHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHH
Confidence            33456678999999999999999999988   67899999999999999887

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.05  E-value=1.1e-05  Score=67.80  Aligned_cols=55  Identities=16%  Similarity=0.187  Sum_probs=46.8

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV  112 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l  112 (299)
                      ...+..+...+.++.+|||+|||+|.++..+++...   +++++|+++.+++.++++.
T Consensus        44 ~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~   98 (245)
T 3ggd_A           44 VVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKEN   98 (245)
T ss_dssp             HHHHHHHTTTSCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHS
T ss_pred             HHHHHHHhhccCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhC
Confidence            445555655678999999999999999999998765   6999999999999998865

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.05  E-value=9.4e-06  Score=68.86  Aligned_cols=45  Identities=13%  Similarity=-0.068  Sum_probs=39.2

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV  112 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l  112 (299)
                      ..++.+|||+|||+|..+.+|++..   ..|+|+|+++.+++.+++..
T Consensus        66 ~~~~~~vLD~GCG~G~~~~~La~~G---~~V~gvD~S~~~i~~a~~~~  110 (252)
T 2gb4_A           66 GQSGLRVFFPLCGKAIEMKWFADRG---HTVVGVEISEIGIREFFAEQ  110 (252)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHTT---CEEEEECSCHHHHHHHHHHT
T ss_pred             CCCCCeEEEeCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHhc
Confidence            4688999999999999999999862   27999999999999987654

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.05  E-value=1.1e-05  Score=78.38  Aligned_cols=79  Identities=16%  Similarity=0.178  Sum_probs=56.6

Q ss_pred             cccccccccccccccCCcch---HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy7837          34 TLLDIPHNIGHNAFMESPSD---HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK  110 (299)
Q Consensus        34 ~y~~~~~~~~~~~~~~~p~~---~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~  110 (299)
                      .|.+...+.........|..   ...+++.+.  ..++.+|||+|||+|.++..+++..++..+++|+|+++.+++.|++
T Consensus       687 ay~dea~p~me~gtFsPPL~eqRle~LLelL~--~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~ARe  764 (950)
T 3htx_A          687 GVKGPSEERMEAAFFKPPLSKQRVEYALKHIR--ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAK  764 (950)
T ss_dssp             EEECSCCCCCCCCCSSSCHHHHHHHHHHHHHH--HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHH
T ss_pred             ccccchhhHHhhCcCCchHHHHHHHHHHHHhc--ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHH
Confidence            44444444444443343332   233444444  4589999999999999999999877555789999999999999998


Q ss_pred             HHHH
Q psy7837         111 RVKA  114 (299)
Q Consensus       111 ~l~~  114 (299)
                      ++..
T Consensus       765 RLa~  768 (950)
T 3htx_A          765 MLHV  768 (950)
T ss_dssp             HHHH
T ss_pred             Hhhh
Confidence            7764

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.05  E-value=3.3e-06  Score=73.26  Aligned_cols=57  Identities=23%  Similarity=0.358  Sum_probs=45.9

Q ss_pred             HHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          57 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        57 ~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +++.+...+.++.+|||+|||+|.++..+++.++. .+++++|+++.+++.|++++..
T Consensus        36 ~l~~l~~~~~~~~~VLDiGCG~G~~~~~la~~~~~-~~v~gvDis~~~i~~A~~~~~~   92 (292)
T 3g07_A           36 RLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGP-SRMVGLDIDSRLIHSARQNIRH   92 (292)
T ss_dssp             GGGTSCGGGTTTSEEEEESCTTCHHHHHHHHHTCC-SEEEEEESCHHHHHHHHHTC--
T ss_pred             HHHhhhhhhcCCCcEEEeCCCCCHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHh
Confidence            33444444567899999999999999999998753 5899999999999999988765

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.04  E-value=1.1e-05  Score=66.43  Aligned_cols=58  Identities=24%  Similarity=0.324  Sum_probs=47.1

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ...+.+.+.  ..++.+|||+|||+|.++..+++..+ ..+++++|+++.+++.+++++..
T Consensus        18 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~   75 (219)
T 3jwg_A           18 LGTVVAVLK--SVNAKKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVSYSVLERAKDRLKI   75 (219)
T ss_dssp             HHHHHHHHH--HTTCCEEEEETCTTCHHHHHHHTSTT-CCEEEEEESCHHHHHHHHHHHTG
T ss_pred             HHHHHHHHh--hcCCCEEEEecCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHh
Confidence            344555554  46789999999999999999988653 36899999999999999998754

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.04  E-value=1.7e-05  Score=65.56  Aligned_cols=58  Identities=22%  Similarity=0.249  Sum_probs=48.9

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ...+.+.+...+.++.+|||+|||+|.++..+++...   +++++|+++.+++.++++...
T Consensus        25 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~   82 (227)
T 1ve3_A           25 IETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKS   82 (227)
T ss_dssp             HHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHh
Confidence            3555666666677899999999999999999988743   899999999999999988765

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.04  E-value=1.2e-05  Score=65.81  Aligned_cols=54  Identities=33%  Similarity=0.481  Sum_probs=45.3

Q ss_pred             HHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Q psy7837          56 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV  112 (299)
Q Consensus        56 ~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l  112 (299)
                      ..+..+...+.++.+|||+|||+|.++..+++.   ..+++++|+++.+++.+++++
T Consensus        32 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~   85 (211)
T 3e23_A           32 ATLTKFLGELPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL   85 (211)
T ss_dssp             HHHHHHHTTSCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc
Confidence            344555556788999999999999999999986   347999999999999998875

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.03  E-value=3.9e-06  Score=70.45  Aligned_cols=48  Identities=19%  Similarity=0.215  Sum_probs=41.8

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+|.+|||||||+|..+..+++..+  ..++++|+++.+++.+++....
T Consensus        58 ~~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~  105 (236)
T 3orh_A           58 SSKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPR  105 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGG
T ss_pred             ccCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhh
Confidence            47899999999999999999987543  4799999999999999987765

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=98.03  E-value=1.9e-05  Score=67.70  Aligned_cols=69  Identities=14%  Similarity=0.351  Sum_probs=52.7

Q ss_pred             cccccCCcchHHHHHHHHhccC-CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          44 HNAFMESPSDHCLVLELLSGHL-KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        44 ~~~~~~~p~~~~~~~~~l~~~~-~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .+..+..|. ...+++.+.+.+ .++.+|||+|||+|..+..+++.. +..+++++|+++.+++.++++...
T Consensus        86 ~~~~ipr~~-te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~  155 (276)
T 2b3t_A           86 PATLIPRPD-TECLVEQALARLPEQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQH  155 (276)
T ss_dssp             TTSCCCCTT-HHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHH
T ss_pred             CCCcccCch-HHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence            334444444 345555554444 678899999999999999999876 357899999999999999998876

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=98.03  E-value=9.8e-06  Score=66.18  Aligned_cols=59  Identities=17%  Similarity=0.046  Sum_probs=46.2

Q ss_pred             hHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          53 DHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        53 ~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +...+++.+.. ..++.+|||+|||+|.++..++...  ..+|+++|+++.+++.+++++..
T Consensus        40 ~~~~l~~~l~~-~~~~~~vLDlGcGtG~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~   98 (201)
T 2ift_A           40 VKETLFNWLMP-YIHQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQT   98 (201)
T ss_dssp             HHHHHHHHHHH-HHTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-hcCCCeEEEcCCccCHHHHHHHHcc--CCEEEEEECCHHHHHHHHHHHHH
Confidence            44455555542 2378999999999999999866553  25899999999999999999876

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.03  E-value=9.8e-06  Score=66.39  Aligned_cols=57  Identities=16%  Similarity=0.266  Sum_probs=46.3

Q ss_pred             hHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          53 DHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        53 ~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +...+++.+.  .+++ +|||+|||+|.++..+++.  +..+++++|+++.+++.+++++..
T Consensus        32 ~~~~~~~~~~--~~~~-~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~   88 (219)
T 3dlc_A           32 IAENIINRFG--ITAG-TCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIAD   88 (219)
T ss_dssp             HHHHHHHHHC--CCEE-EEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcC--CCCC-EEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHh
Confidence            3444444443  4556 9999999999999999987  346899999999999999998876

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.03  E-value=1.4e-05  Score=64.88  Aligned_cols=62  Identities=23%  Similarity=0.289  Sum_probs=47.6

Q ss_pred             CcchHHHHHHHHhc-cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          50 SPSDHCLVLELLSG-HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        50 ~p~~~~~~~~~l~~-~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      .+.....++..+.. ...++.+|||+|||+|.++..+++. + ..+++++|+++.+++.+++++.
T Consensus        33 ~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~   95 (200)
T 1ne2_A           33 DASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL-G-AESVTAFDIDPDAIETAKRNCG   95 (200)
T ss_dssp             CHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT-T-BSEEEEEESCHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHhcC
Confidence            34444555554432 2457899999999999999999886 2 3579999999999999988753

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.02  E-value=1.2e-05  Score=70.41  Aligned_cols=48  Identities=19%  Similarity=0.142  Sum_probs=43.3

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.++.+|||+|||+|.++..+++..+  .+++++|+++.+++.+++.+..
T Consensus        88 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~  135 (318)
T 2fk8_A           88 LKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLAS  135 (318)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCcCEEEEEcccchHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHh
Confidence            57899999999999999999998874  4899999999999999988765

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.02  E-value=1.2e-05  Score=66.40  Aligned_cols=48  Identities=21%  Similarity=0.228  Sum_probs=42.8

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .++.+|||+|||+|.++..+++.. +...++|+|+++.+++.+++++..
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~   84 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKD   84 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHH
T ss_pred             CCCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHH
Confidence            467899999999999999999875 457899999999999999998876

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=98.02  E-value=8.8e-06  Score=67.89  Aligned_cols=43  Identities=26%  Similarity=0.379  Sum_probs=39.7

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHH
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~  172 (299)
                      .++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.++++
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~   97 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKH   97 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHH
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence            56889999999999999999987  68999999999999999887

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=98.02  E-value=8.5e-06  Score=70.14  Aligned_cols=52  Identities=19%  Similarity=0.192  Sum_probs=45.2

Q ss_pred             HhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          61 LSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        61 l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +...+++|.+|||+|||+|.++..+++....  +|+++|+++.+++.+++++..
T Consensus       119 l~~~~~~~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~  170 (278)
T 2frn_A          119 MAKVAKPDELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHL  170 (278)
T ss_dssp             HHHHCCTTCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHH
Confidence            3334788999999999999999999987643  899999999999999998875

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.02  E-value=1.6e-05  Score=67.83  Aligned_cols=48  Identities=25%  Similarity=0.355  Sum_probs=43.2

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.++.+|||+|||+|.++..+++..+  .+++++|+++.+++.+++.+..
T Consensus        59 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~  106 (273)
T 3bus_A           59 VRSGDRVLDVGCGIGKPAVRLATARD--VRVTGISISRPQVNQANARATA  106 (273)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHSC--CEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHh
Confidence            57899999999999999999998763  6899999999999999988765

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.01  E-value=6.8e-06  Score=67.66  Aligned_cols=45  Identities=33%  Similarity=0.550  Sum_probs=40.5

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcC---CeEEEEeCChHHHHHHHHH
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMG---AKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~---~~v~~~D~~~~~~~~a~~~  172 (299)
                      ...++.+|||+|||+|.++..+++.+   .+|+++|+++.+++.++++
T Consensus        34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~   81 (219)
T 3dh0_A           34 GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEK   81 (219)
T ss_dssp             TCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHH
Confidence            45678899999999999999999875   7899999999999999875

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.01  E-value=7e-06  Score=69.40  Aligned_cols=45  Identities=22%  Similarity=0.307  Sum_probs=40.3

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHH
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNI  173 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~  173 (299)
                      ..++.+|||+|||+|+.+..+++.   +.+|+++|+++.+++.+++++
T Consensus        77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~  124 (247)
T 1sui_A           77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVI  124 (247)
T ss_dssp             HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHH
T ss_pred             hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH
Confidence            356789999999999999999876   689999999999999999873

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.01  E-value=9.2e-06  Score=68.12  Aligned_cols=44  Identities=23%  Similarity=0.342  Sum_probs=39.8

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~  172 (299)
                      ..++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.++++
T Consensus        58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~  104 (239)
T 2hnk_A           58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKY  104 (239)
T ss_dssp             HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHH
T ss_pred             hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH
Confidence            356889999999999999999987   57899999999999999886

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.01  E-value=1e-05  Score=64.19  Aligned_cols=50  Identities=20%  Similarity=0.199  Sum_probs=40.9

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHH
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEA  107 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~  107 (299)
                      ...+++.+.....++.+|||+|||+|.++..+++..    +++++|+++.+++.
T Consensus        10 ~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~   59 (170)
T 3q87_B           10 TYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES   59 (170)
T ss_dssp             HHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT
T ss_pred             HHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc
Confidence            356666665223678899999999999999998765    79999999999987

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.01  E-value=1.5e-05  Score=66.15  Aligned_cols=45  Identities=40%  Similarity=0.600  Sum_probs=40.4

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCC-------eEEEEeCChHHHHHHHHH
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGA-------KVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~-------~v~~~D~~~~~~~~a~~~  172 (299)
                      .+.++.+|||+|||+|.++..+++...       +|+++|+++.+++.++++
T Consensus        77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~  128 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLEN  128 (227)
T ss_dssp             TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHH
T ss_pred             hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHH
Confidence            456789999999999999999998753       899999999999999887

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=98.00  E-value=1.8e-05  Score=67.17  Aligned_cols=60  Identities=22%  Similarity=0.340  Sum_probs=49.0

Q ss_pred             chHHHHHHHHhccCC-CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          52 SDHCLVLELLSGHLK-YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        52 ~~~~~~~~~l~~~~~-~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..-..++..+. .++ ++.+|||+|||+|.++..+++...  ++++++|+++.+++.+++++..
T Consensus        34 ~~d~~ll~~~~-~~~~~~~~vLDlG~G~G~~~~~la~~~~--~~v~gvDi~~~~~~~a~~n~~~   94 (259)
T 3lpm_A           34 SIDAVLLAKFS-YLPIRKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRSVAY   94 (259)
T ss_dssp             CHHHHHHHHHC-CCCSSCCEEEETTCTTTHHHHHHHTTCC--CEEEEECCSHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHh-cCCCCCCEEEEcCCchhHHHHHHHHhcC--CcEEEEECCHHHHHHHHHHHHH
Confidence            33345555554 367 899999999999999999998743  3899999999999999999876

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=97.99  E-value=8.2e-06  Score=67.27  Aligned_cols=54  Identities=24%  Similarity=0.259  Sum_probs=44.5

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~  111 (299)
                      ...++.+.  ++++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+.+.
T Consensus        17 ~~~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~   70 (218)
T 3mq2_A           17 DAEFEQLR--SQYDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAK   70 (218)
T ss_dssp             HHHHHHHH--TTSSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHH
T ss_pred             HHHHHHhh--ccCCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHH
Confidence            45666666  7899999999999999999999864 457999999999988864433

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=97.99  E-value=1.3e-05  Score=66.50  Aligned_cols=45  Identities=22%  Similarity=0.249  Sum_probs=40.3

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~  172 (299)
                      ...++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.++++
T Consensus        66 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~  113 (229)
T 2avd_A           66 RLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPL  113 (229)
T ss_dssp             HHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHH
T ss_pred             HhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH
Confidence            3456889999999999999999986   67899999999999999887

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=97.99  E-value=1.5e-05  Score=66.78  Aligned_cols=57  Identities=21%  Similarity=0.102  Sum_probs=47.0

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ...+...+.. ..++.+|||+|||+|.++..+++..   .+++++|+++.+++.+++++..
T Consensus        66 ~~~l~~~~~~-~~~~~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~  122 (241)
T 3gdh_A           66 AEHIAGRVSQ-SFKCDVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEV  122 (241)
T ss_dssp             HHHHHHHHHH-HSCCSEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhh-ccCCCEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHH
Confidence            3444444442 4589999999999999999999863   6899999999999999998876

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.99  E-value=1.8e-05  Score=66.87  Aligned_cols=50  Identities=28%  Similarity=0.297  Sum_probs=43.2

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~  172 (299)
                      +.....+.++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.++++
T Consensus        88 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~  140 (258)
T 2pwy_A           88 MVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERN  140 (258)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence            333445678999999999999999999987   67899999999999999875

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=97.98  E-value=1.6e-05  Score=67.14  Aligned_cols=60  Identities=23%  Similarity=0.243  Sum_probs=47.1

Q ss_pred             HHHHHHHhccC--CCCCEEEEEccCCCHHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHL--KYGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~--~~g~~vldiG~G~G~~~~~la~~~-~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+++.+...+  .++.+|||+|||+|.++..+++.+ .+..+++++|+++.+++.+++++..
T Consensus        37 ~~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~   99 (250)
T 1o9g_A           37 TEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLAL   99 (250)
T ss_dssp             HHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHH
Confidence            35555554433  367899999999999999999873 2346899999999999999988764

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=97.98  E-value=1.4e-05  Score=65.36  Aligned_cols=58  Identities=16%  Similarity=0.059  Sum_probs=45.2

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ...+++.+.. ..++.+|||+|||+|.++..++....  .+|+++|+++.+++.+++++..
T Consensus        42 ~~~l~~~l~~-~~~~~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~   99 (202)
T 2fpo_A           42 RETLFNWLAP-VIVDAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLAT   99 (202)
T ss_dssp             HHHHHHHHHH-HHTTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh-hcCCCeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHH
Confidence            3444555442 12689999999999999998766532  4899999999999999998876

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=97.97  E-value=1.3e-05  Score=67.16  Aligned_cols=45  Identities=27%  Similarity=0.353  Sum_probs=40.2

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHH
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNI  173 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~  173 (299)
                      ..++.+|||+|||+|+.+..+++.   +.+++++|+++.+++.+++++
T Consensus        68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~  115 (237)
T 3c3y_A           68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFI  115 (237)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHH
T ss_pred             hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH
Confidence            356789999999999999999876   678999999999999998873

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=97.97  E-value=1.2e-05  Score=67.41  Aligned_cols=48  Identities=13%  Similarity=0.210  Sum_probs=42.6

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .++.+|||+|||+|..+..++... +.++++++|+++.+++.++++...
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~  116 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEA  116 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHH
Confidence            578999999999999999999753 457899999999999999998876

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=97.97  E-value=4.1e-06  Score=71.31  Aligned_cols=53  Identities=15%  Similarity=0.186  Sum_probs=42.5

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK  110 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~  110 (299)
                      ..+++.|......+.+|||+|||+|.++..|++..   .+|+++|+++.|++.+++
T Consensus        27 ~~l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~---~~v~gvD~s~~ml~~a~~   79 (257)
T 4hg2_A           27 RALFRWLGEVAPARGDALDCGCGSGQASLGLAEFF---ERVHAVDPGEAQIRQALR   79 (257)
T ss_dssp             HHHHHHHHHHSSCSSEEEEESCTTTTTHHHHHTTC---SEEEEEESCHHHHHTCCC
T ss_pred             HHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhC---CEEEEEeCcHHhhhhhhh
Confidence            34455665555667899999999999999999765   479999999999987654

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=97.96  E-value=1.2e-05  Score=72.44  Aligned_cols=50  Identities=36%  Similarity=0.488  Sum_probs=46.3

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.++.+|||+|||+|.++..+++..++.++++++|+++.+++.+++++..
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~  130 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEY  130 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHH
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            56889999999999999999999998888999999999999999988765

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=97.96  E-value=1.2e-05  Score=67.11  Aligned_cols=43  Identities=26%  Similarity=0.271  Sum_probs=39.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~  172 (299)
                      .++.+|||+|||+|+.+..+++.   +.+|+++|+++.+++.++++
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~  116 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKY  116 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHH
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH
Confidence            45789999999999999999986   56899999999999999886

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.96  E-value=9.7e-06  Score=67.80  Aligned_cols=48  Identities=19%  Similarity=0.234  Sum_probs=41.0

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..++.+|||+|||+|.++..+++..  ..+++++|+++.+++.++++...
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~  105 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPR  105 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGG
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhcC--CCeEEEEcCCHHHHHHHHHHHHh
Confidence            5788999999999999999997642  23899999999999999987654

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=97.96  E-value=1.5e-05  Score=67.10  Aligned_cols=50  Identities=16%  Similarity=0.185  Sum_probs=43.9

Q ss_pred             cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .+.++.+|||+|||+|.++..+++.. +...++++|+++.+++.+++++..
T Consensus        46 ~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~   95 (246)
T 2vdv_E           46 QMTKKVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIA   95 (246)
T ss_dssp             CBSCCEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHH
Confidence            35688999999999999999999876 356899999999999999988765

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=97.96  E-value=2.9e-05  Score=66.53  Aligned_cols=52  Identities=21%  Similarity=0.255  Sum_probs=46.4

Q ss_pred             hccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          62 SGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        62 ~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ...+.++++|||+|||+|.++..+++..+ .++++++|+++.+++.+++++..
T Consensus       114 ~~~~~~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~  165 (272)
T 3a27_A          114 AFISNENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKL  165 (272)
T ss_dssp             HTSCCTTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHH
T ss_pred             HHhcCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHH
Confidence            34478999999999999999999999865 56899999999999999998876

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.95  E-value=2e-05  Score=67.57  Aligned_cols=47  Identities=28%  Similarity=0.448  Sum_probs=41.6

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~  172 (299)
                      ...+.++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.++++
T Consensus        94 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~  143 (280)
T 1i9g_A           94 EGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRN  143 (280)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH
T ss_pred             HcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence            345678899999999999999999985   67899999999999999875

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=97.95  E-value=2.8e-05  Score=67.20  Aligned_cols=59  Identities=17%  Similarity=0.184  Sum_probs=48.1

Q ss_pred             HHHHHHHHh--ccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          54 HCLVLELLS--GHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        54 ~~~~~~~l~--~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ...+++.+.  ..+.++.+|||+|||+|.++..+++..+  .+++++|+++.+++.+++.+..
T Consensus        67 ~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~  127 (297)
T 2o57_A           67 DEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQ  127 (297)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHh
Confidence            344555551  1368999999999999999999998874  4899999999999999988765

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=97.95  E-value=1.6e-05  Score=67.20  Aligned_cols=48  Identities=13%  Similarity=0.221  Sum_probs=43.4

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .++.+|||+|||+|..+..++... +..+|+++|+++.+++.+++++..
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~  126 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEV  126 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence            578899999999999999999875 457999999999999999999876

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=97.95  E-value=2e-05  Score=65.76  Aligned_cols=56  Identities=21%  Similarity=0.321  Sum_probs=47.2

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ....+.+...+.++.+|||+|||+|.++..+++.    .+++++|+++.+++.+++....
T Consensus        21 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~   76 (243)
T 3d2l_A           21 PEWVAWVLEQVEPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAME   76 (243)
T ss_dssp             HHHHHHHHHHSCTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhh
Confidence            4455556556788899999999999999988876    5799999999999999988765

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=97.94  E-value=1.9e-05  Score=66.70  Aligned_cols=59  Identities=17%  Similarity=0.220  Sum_probs=48.6

Q ss_pred             cchHHHHHHHH---hccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Q psy7837          51 PSDHCLVLELL---SGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV  112 (299)
Q Consensus        51 p~~~~~~~~~l---~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l  112 (299)
                      +.....+++.+   ...+.++.+|||+|||+|.++..+++.   ..+++++|+++.+++.+++.+
T Consensus        20 ~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~   81 (263)
T 2yqz_A           20 PEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKI   81 (263)
T ss_dssp             HHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHh
Confidence            34456666666   335788999999999999999999876   358999999999999998876

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=97.94  E-value=2.1e-05  Score=64.68  Aligned_cols=48  Identities=17%  Similarity=0.154  Sum_probs=43.0

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .++.+|||+|||+|.++..+++..+ ..+++++|+++.+++.+++++..
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~   87 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLE   87 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHH
Confidence            4688999999999999999998863 57899999999999999998865

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=97.94  E-value=2.1e-05  Score=65.18  Aligned_cols=48  Identities=19%  Similarity=0.090  Sum_probs=42.8

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .++.+|||+|||+|.++..+++.. ++..++|+|+++.+++.+++++..
T Consensus        33 ~~~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~   80 (218)
T 3dxy_A           33 REAPVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHE   80 (218)
T ss_dssp             SCCCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHH
Confidence            467899999999999999999875 457899999999999999988876

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=97.93  E-value=1.2e-05  Score=68.42  Aligned_cols=57  Identities=21%  Similarity=0.257  Sum_probs=45.5

Q ss_pred             CcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837          50 SPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        50 ~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~  111 (299)
                      .+.+...+++.+.  ..++.+|||+|||+|.++..+++   +..+++++|+++.+++.+++.
T Consensus        19 ~~~~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~   75 (261)
T 3ege_A           19 DIRIVNAIINLLN--LPKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVMRQQAVVH   75 (261)
T ss_dssp             CHHHHHHHHHHHC--CCTTCEEEEETCTTSHHHHHHHT---TTCEEEEECSCHHHHHSSCCC
T ss_pred             cHHHHHHHHHHhC--CCCCCEEEEEcCcccHHHHHHHh---CCCEEEEEeCCHHHHHHHHhc
Confidence            3455566666665  68899999999999999999997   346899999999988866543

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=97.93  E-value=3.1e-05  Score=69.52  Aligned_cols=61  Identities=26%  Similarity=0.192  Sum_probs=50.3

Q ss_pred             CcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          50 SPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        50 ~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .+.+.+.++...   +.++.+|||+|||+|.++..++.... .++++|+|+++.+++.+++++..
T Consensus       203 ~~~la~~l~~~~---~~~~~~vLD~gCGsG~~~i~~a~~~~-~~~v~g~Dis~~~l~~A~~n~~~  263 (373)
T 3tm4_A          203 KASIANAMIELA---ELDGGSVLDPMCGSGTILIELALRRY-SGEIIGIEKYRKHLIGAEMNALA  263 (373)
T ss_dssp             CHHHHHHHHHHH---TCCSCCEEETTCTTCHHHHHHHHTTC-CSCEEEEESCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhh---cCCCCEEEEccCcCcHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHH
Confidence            444555555444   78899999999999999999998753 46899999999999999999876

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=97.93  E-value=1.6e-05  Score=68.26  Aligned_cols=53  Identities=26%  Similarity=0.446  Sum_probs=45.0

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV  112 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l  112 (299)
                      ..+++.+.  +.++.+|||+|||+|.++..+++   +..+++++|+++.+++.+++..
T Consensus        47 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~   99 (279)
T 3ccf_A           47 EDLLQLLN--PQPGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIEKARQNY   99 (279)
T ss_dssp             CHHHHHHC--CCTTCEEEEETCTTSHHHHHHHH---TTCEEEEEESCHHHHHHHHHHC
T ss_pred             HHHHHHhC--CCCCCEEEEecCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHhhC
Confidence            45566665  67899999999999999999998   3468999999999999888764

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=97.93  E-value=7.9e-07  Score=75.15  Aligned_cols=64  Identities=31%  Similarity=0.420  Sum_probs=53.5

Q ss_pred             ccc-ccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Q psy7837          44 HNA-FMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV  112 (299)
Q Consensus        44 ~~~-~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l  112 (299)
                      .|| +...+.....+++.+.  +.++++|||+|||+|.++..+++..   ++++++|+++.+++.+++++
T Consensus         7 ~gq~fl~~~~~~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~   71 (245)
T 1yub_A            7 YSQNFLTSEKVLNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKL   71 (245)
T ss_dssp             SCCCBCCCTTTHHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTT
T ss_pred             cCCCCCCCHHHHHHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHh
Confidence            455 4567777888888876  7899999999999999999999874   57999999999988777654

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=97.93  E-value=1.1e-05  Score=68.40  Aligned_cols=48  Identities=25%  Similarity=0.343  Sum_probs=42.6

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.++.+|||+|||+|.++..+++..  ..+++++|+++.+++.+++....
T Consensus        53 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~  100 (266)
T 3ujc_A           53 LNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSG  100 (266)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCS
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhc
Confidence            5789999999999999999999987  35899999999999999887644

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.93  E-value=0.00012  Score=60.25  Aligned_cols=111  Identities=12%  Similarity=-0.009  Sum_probs=73.8

Q ss_pred             HHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc-CCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEc-CCC
Q psy7837         118 TYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM-GAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA-DGR  194 (299)
Q Consensus       118 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~-~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-d~~  194 (299)
                      |+....... .+.++.+|+|+||++|.++..++.. +.. |+++|+-..--+..+ .++.     .+...++|..+ |+.
T Consensus        66 KL~ei~ek~-~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~-~~~s-----~gwn~v~fk~gvDv~  138 (267)
T 3p8z_A           66 KLQWFVERN-MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV-PMST-----YGWNIVKLMSGKDVF  138 (267)
T ss_dssp             HHHHHHHTT-SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCC-----TTTTSEEEECSCCGG
T ss_pred             HHHHHHHhc-CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc-hhhh-----cCcCceEEEecccee
Confidence            444433334 6688999999999999999977765 554 999999643110000 0011     34578999999 876


Q ss_pred             CCCCCCCCeeEEEecchhh------------hHHHHHHHhccCCcEEEEEecCCCC
Q psy7837         195 RGYPDAAPYDVIYISQAIR------------DIPWHIVDQLKLGGRMLFIKGHEDD  238 (299)
Q Consensus       195 ~~~~~~~~fD~v~~~~~~~------------~~~~~~~~~L~~gG~lv~~~~~~~~  238 (299)
                      ...+  .++|.|+|+..-.            .+.+-+.++|++ |.+++-+..+..
T Consensus       139 ~~~~--~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~  191 (267)
T 3p8z_A          139 YLPP--EKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM  191 (267)
T ss_dssp             GCCC--CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS
T ss_pred             ecCC--ccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC
Confidence            5433  5699999987531            123345678888 888888776654

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.93  E-value=4.6e-05  Score=68.13  Aligned_cols=106  Identities=14%  Similarity=0.066  Sum_probs=68.0

Q ss_pred             CCeEEEEcCCCcHHHHHHHH-----------------cCCeEEEEeCChHHHHHHHHHHHhcCCcc-------cCCCCeE
Q psy7837         132 GSKVLDIGSGSGYLSALFAY-----------------MGAKVYAIEHVKNLCKRAMKNIRRGAPAI-------ALAENFE  187 (299)
Q Consensus       132 ~~~vLDiG~G~G~~~~~la~-----------------~~~~v~~~D~~~~~~~~a~~~~~~~~~~~-------~~~~~v~  187 (299)
                      ..+|+|+|||+|.+++.+..                 ...+|+.-|+-.+.-...-+.+......+       ....+.-
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            57899999999999987621                 13468888987666555544443310000       0000112


Q ss_pred             EEE---cCCCCCCCCCCCeeEEEecchhhhHH--------------------------------------------HHHH
Q psy7837         188 FVC---ADGRRGYPDAAPYDVIYISQAIRDIP--------------------------------------------WHIV  220 (299)
Q Consensus       188 ~~~---~d~~~~~~~~~~fD~v~~~~~~~~~~--------------------------------------------~~~~  220 (299)
                      |+.   +.......+.++||+|+++.+++|+.                                            +...
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra  212 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA  212 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333   33333445568999999999988753                                            2348


Q ss_pred             HhccCCcEEEEEecCCC
Q psy7837         221 DQLKLGGRMLFIKGHED  237 (299)
Q Consensus       221 ~~L~~gG~lv~~~~~~~  237 (299)
                      +.|+|||++++.+....
T Consensus       213 ~eL~pGG~mvl~~~gr~  229 (374)
T 3b5i_A          213 AEVKRGGAMFLVCLGRT  229 (374)
T ss_dssp             HHEEEEEEEEEEEEECC
T ss_pred             HHhCCCCEEEEEEecCC
Confidence            89999999999987654

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=97.93  E-value=1.8e-05  Score=72.21  Aligned_cols=49  Identities=22%  Similarity=0.299  Sum_probs=41.8

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHc-C-CeEEEEeCChHHHHHHHHHHH
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYM-G-AKVYAIEHVKNLCKRAMKNIR  174 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~-~-~~v~~~D~~~~~~~~a~~~~~  174 (299)
                      ...+.++.+|||+|||+|.++..+++. + .+|+|+|+++.+++.|+..++
T Consensus       237 ~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~  287 (433)
T 1u2z_A          237 QCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYE  287 (433)
T ss_dssp             HTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHH
T ss_pred             hcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHH
Confidence            345678899999999999999999986 5 479999999999999966554

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=97.92  E-value=2.4e-05  Score=63.73  Aligned_cols=60  Identities=12%  Similarity=0.207  Sum_probs=47.7

Q ss_pred             HHHHHHHHhcc-CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          54 HCLVLELLSGH-LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        54 ~~~~~~~l~~~-~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ...+++.+... ..++.+|||+|||+|..+..++... +..+++++|+++.+++.+++++..
T Consensus        51 ~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~  111 (207)
T 1jsx_A           51 VRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHE  111 (207)
T ss_dssp             HHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH
Confidence            44555555411 1258899999999999999999876 357899999999999999998876

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=97.92  E-value=3.3e-05  Score=62.31  Aligned_cols=55  Identities=18%  Similarity=0.186  Sum_probs=45.7

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+++.+.  ..++.+|||+|||+|.++..+++.   ..+++++|+++.+++.+++++..
T Consensus        22 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~   76 (199)
T 2xvm_A           22 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSI   76 (199)
T ss_dssp             HHHHHHTT--TSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHh
Confidence            34555554  567889999999999999999987   34899999999999999988765

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=97.91  E-value=2.6e-05  Score=64.11  Aligned_cols=54  Identities=31%  Similarity=0.322  Sum_probs=45.8

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      ..+++.+.  ..++.+|||+|||+|.++..+++.   ..+++++|+++.+++.+++.+.
T Consensus        35 ~~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~   88 (220)
T 3hnr_A           35 EDILEDVV--NKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP   88 (220)
T ss_dssp             HHHHHHHH--HTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC
T ss_pred             HHHHHHhh--ccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC
Confidence            56666666  568999999999999999999986   3589999999999998887654

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.91  E-value=0.00014  Score=62.18  Aligned_cols=112  Identities=14%  Similarity=0.015  Sum_probs=70.4

Q ss_pred             HHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc-CC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCC
Q psy7837         116 AETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM-GA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADG  193 (299)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~-~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  193 (299)
                      +.|+.+.... ..+.++.+|||+||++|.++..+++. +. .|.++|+...+...... .+      ....++.....+.
T Consensus        67 a~KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~------~~~~~iv~~~~~~  138 (300)
T 3eld_A           67 AAKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQ------TLGWNIVKFKDKS  138 (300)
T ss_dssp             HHHHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CC------BTTGGGEEEECSC
T ss_pred             HHHHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-cc------ccCCceEEeecCc
Confidence            4455555555 55678999999999999999999975 54 48899986432100000 00      0011233333222


Q ss_pred             CCCCCCCCCeeEEEecchhh------------hHHHHHHHhccCC-cEEEEEecC
Q psy7837         194 RRGYPDAAPYDVIYISQAIR------------DIPWHIVDQLKLG-GRMLFIKGH  235 (299)
Q Consensus       194 ~~~~~~~~~fD~v~~~~~~~------------~~~~~~~~~L~~g-G~lv~~~~~  235 (299)
                      ........++|+|+++....            .+.+-+..+|+|| |.+++.+..
T Consensus       139 di~~l~~~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~  193 (300)
T 3eld_A          139 NVFTMPTEPSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA  193 (300)
T ss_dssp             CTTTSCCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred             eeeecCCCCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence            22122346799999987643            1233457899999 999998876

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=97.91  E-value=2.7e-05  Score=63.60  Aligned_cols=57  Identities=18%  Similarity=0.134  Sum_probs=47.4

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      ..+.+.+...+.++.+|||+|||+|.++..+++...  .+++++|+++.+++.++++..
T Consensus        30 ~~~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~   86 (215)
T 2pxx_A           30 SSFRALLEPELRPEDRILVLGCGNSALSYELFLGGF--PNVTSVDYSSVVVAAMQACYA   86 (215)
T ss_dssp             HHHHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTC--CCEEEEESCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCC--CcEEEEeCCHHHHHHHHHhcc
Confidence            345666666678999999999999999999988632  279999999999999988764

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=97.91  E-value=2.4e-05  Score=64.78  Aligned_cols=47  Identities=51%  Similarity=0.846  Sum_probs=42.6

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHc-C--CeEEEEeCChHHHHHHHHHHHh
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYM-G--AKVYAIEHVKNLCKRAMKNIRR  175 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~-~--~~v~~~D~~~~~~~~a~~~~~~  175 (299)
                      +.++.+|||+|||+|..+..+++. +  .+|+++|+++.+++.+++++..
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~  124 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK  124 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence            567899999999999999999876 4  6899999999999999999866

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=97.91  E-value=1.6e-05  Score=68.14  Aligned_cols=50  Identities=30%  Similarity=0.450  Sum_probs=41.8

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~  172 (299)
                      +.....+.++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.++++
T Consensus       102 ~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~  154 (275)
T 1yb2_A          102 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDN  154 (275)
T ss_dssp             ----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHH
T ss_pred             HHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHH
Confidence            334456778899999999999999999887   68999999999999999875

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=97.91  E-value=1.7e-05  Score=69.01  Aligned_cols=80  Identities=14%  Similarity=0.125  Sum_probs=65.9

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---C--CC
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---P--DA  200 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~--~~  200 (299)
                      ...++.+|||+|||+|..+..+++.  +.+|+++|.|+.+++.++++++.+     + .+++++++|+....   .  ..
T Consensus        23 ~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~-----g-~~v~~v~~d~~~l~~~l~~~g~   96 (301)
T 1m6y_A           23 KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF-----S-DRVSLFKVSYREADFLLKTLGI   96 (301)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG-----T-TTEEEEECCGGGHHHHHHHTTC
T ss_pred             CCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc-----C-CcEEEEECCHHHHHHHHHhcCC
Confidence            3467899999999999999999887  578999999999999999998773     3 68999999987531   1  11


Q ss_pred             CCeeEEEecchhh
Q psy7837         201 APYDVIYISQAIR  213 (299)
Q Consensus       201 ~~fD~v~~~~~~~  213 (299)
                      .+||.|+++.+..
T Consensus        97 ~~~D~Vl~D~gvS  109 (301)
T 1m6y_A           97 EKVDGILMDLGVS  109 (301)
T ss_dssp             SCEEEEEEECSCC
T ss_pred             CCCCEEEEcCccc
Confidence            4799999987654

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.91  E-value=2.5e-05  Score=68.94  Aligned_cols=48  Identities=33%  Similarity=0.459  Sum_probs=43.9

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc-C--CeEEEEeCChHHHHHHHHHHHh
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM-G--AKVYAIEHVKNLCKRAMKNIRR  175 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~-~--~~v~~~D~~~~~~~~a~~~~~~  175 (299)
                      .+.++.+|||+|||+|.++..+++. |  .+|+++|+++.+++.++++++.
T Consensus       102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~  152 (336)
T 2b25_A          102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKH  152 (336)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Confidence            5678999999999999999999987 5  7899999999999999999876

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=97.90  E-value=2.7e-05  Score=64.74  Aligned_cols=49  Identities=18%  Similarity=0.370  Sum_probs=43.4

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++.+..
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~   90 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRG   90 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCS
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhcc
Confidence            5688999999999999999999886 356899999999999999988754

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=97.89  E-value=1.8e-05  Score=66.08  Aligned_cols=54  Identities=19%  Similarity=0.334  Sum_probs=45.1

Q ss_pred             HHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Q psy7837          56 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV  112 (299)
Q Consensus        56 ~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l  112 (299)
                      .+++.+...+.++.+|||+|||+|.++..+++.   ..+++++|+++.+++.+++..
T Consensus        42 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~   95 (242)
T 3l8d_A           42 TIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERG   95 (242)
T ss_dssp             THHHHHHHHSCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTT
T ss_pred             HHHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhc
Confidence            445556556789999999999999999999987   347999999999999887763

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.89  E-value=3e-05  Score=66.45  Aligned_cols=49  Identities=31%  Similarity=0.467  Sum_probs=42.9

Q ss_pred             hhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837         124 NFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       124 ~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~  172 (299)
                      .....+.++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.++++
T Consensus       105 ~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~  156 (277)
T 1o54_A          105 AMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESN  156 (277)
T ss_dssp             HHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHH
T ss_pred             HHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHH
Confidence            33446678999999999999999999887   57899999999999999887

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=97.88  E-value=2e-05  Score=66.09  Aligned_cols=49  Identities=16%  Similarity=0.226  Sum_probs=41.4

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..++.+|||||||+|.++..+++.. +...++|+|+++.+++.+++++..
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~   92 (235)
T 3ckk_A           44 AQAQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRA   92 (235)
T ss_dssp             --CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHH
Confidence            4567899999999999999999875 356899999999999999887754

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=97.88  E-value=1.2e-05  Score=69.91  Aligned_cols=56  Identities=20%  Similarity=0.129  Sum_probs=47.2

Q ss_pred             HHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          59 ELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        59 ~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.+...++++.+|||+|||+|.++..++....+..+++++|+++.+++.+++++..
T Consensus       110 ~~l~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~  165 (305)
T 3ocj_A          110 RALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAG  165 (305)
T ss_dssp             HHHHHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTT
T ss_pred             HHHHhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHh
Confidence            33444578999999999999999999875555667999999999999999998865

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=97.87  E-value=3.8e-05  Score=64.16  Aligned_cols=43  Identities=23%  Similarity=0.410  Sum_probs=37.2

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHH
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAM  170 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~  170 (299)
                      .+.++.+|||+|||+|.++..+++.   ...|+++|+++.+++.+.
T Consensus        73 ~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~  118 (232)
T 3id6_C           73 PIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELL  118 (232)
T ss_dssp             SCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHH
T ss_pred             CCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHH
Confidence            4678999999999999999999876   458999999999876553

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=97.87  E-value=5.2e-05  Score=66.14  Aligned_cols=48  Identities=15%  Similarity=0.223  Sum_probs=43.6

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.++.+|||+|||+|.++..+++..+  .+++++|+++.+++.+++++..
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~  162 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRFG--SRVEGVTLSAAQADFGNRRARE  162 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHH
Confidence            57899999999999999999999864  5899999999999999998876

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=97.87  E-value=4.5e-06  Score=70.39  Aligned_cols=44  Identities=23%  Similarity=0.321  Sum_probs=38.5

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~  172 (299)
                      ..++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.++++
T Consensus        58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~  104 (242)
T 3r3h_A           58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPY  104 (242)
T ss_dssp             HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHH
T ss_pred             hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH
Confidence            345789999999999999999984   67899999999988888776

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=97.87  E-value=4.5e-05  Score=64.15  Aligned_cols=47  Identities=23%  Similarity=0.336  Sum_probs=41.4

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..++.+|||+|||+|.++..+++.   ..+++++|+++.+++.++++...
T Consensus        39 ~~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~   85 (252)
T 1wzn_A           39 KREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKE   85 (252)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHh
Confidence            367889999999999999999886   24799999999999999988765

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=97.85  E-value=2.4e-05  Score=66.37  Aligned_cols=58  Identities=21%  Similarity=0.326  Sum_probs=47.2

Q ss_pred             hHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          53 DHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        53 ~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      ....+.+.+...+.++.+|||+|||+|.++..+++..   .+++++|+++.+++.+++...
T Consensus        36 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~   93 (263)
T 3pfg_A           36 EAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSF---GTVEGLELSADMLAIARRRNP   93 (263)
T ss_dssp             HHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTS---SEEEEEESCHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCC
Confidence            3455666666666778999999999999999998763   379999999999999887653

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=97.85  E-value=3.6e-05  Score=63.04  Aligned_cols=53  Identities=25%  Similarity=0.406  Sum_probs=44.3

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK  110 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~  110 (299)
                      ...+++.+. .+.++.+|||+|||+|.++..+++.   ..+++++|+++.+++.+++
T Consensus        34 ~~~~~~~l~-~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~   86 (218)
T 3ou2_A           34 APAALERLR-AGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGR   86 (218)
T ss_dssp             HHHHHHHHT-TTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGG
T ss_pred             HHHHHHHHh-cCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHh
Confidence            345555554 3778899999999999999999988   3489999999999998887

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=97.85  E-value=2e-05  Score=66.49  Aligned_cols=46  Identities=24%  Similarity=0.252  Sum_probs=41.1

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~  111 (299)
                      +.++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++.
T Consensus        31 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~   76 (259)
T 2p35_A           31 LERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADR   76 (259)
T ss_dssp             CSCCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHH
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHh
Confidence            5788999999999999999999886 346899999999999998876

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=97.85  E-value=4.4e-05  Score=63.49  Aligned_cols=55  Identities=22%  Similarity=0.353  Sum_probs=45.6

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV  112 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l  112 (299)
                      ..+.+.+...+.++.+|||+|||+|.++..+++...   +++++|+++.+++.+++.+
T Consensus        28 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~   82 (239)
T 3bxo_A           28 SDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRL   82 (239)
T ss_dssp             HHHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhC
Confidence            445555555457889999999999999999998864   7999999999999888764

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=97.85  E-value=2e-05  Score=62.15  Aligned_cols=51  Identities=16%  Similarity=0.251  Sum_probs=43.7

Q ss_pred             HHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837          56 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        56 ~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~  111 (299)
                      .+++.+.  +.++.+|||+|||+|.++..+++..   .+++++|+++.+++.+++.
T Consensus         8 ~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~   58 (170)
T 3i9f_A            8 EYLPNIF--EGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK   58 (170)
T ss_dssp             TTHHHHH--SSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH
T ss_pred             HHHHhcC--cCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh
Confidence            3455555  7889999999999999999999876   3899999999999988877

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.85  E-value=2.7e-05  Score=64.60  Aligned_cols=48  Identities=42%  Similarity=0.739  Sum_probs=42.5

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc-C-------CeEEEEeCChHHHHHHHHHHHh
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM-G-------AKVYAIEHVKNLCKRAMKNIRR  175 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~-~-------~~v~~~D~~~~~~~~a~~~~~~  175 (299)
                      .+.++.+|||+|||+|.++..+++. +       .+|+++|+++.+++.+++++..
T Consensus        81 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~  136 (227)
T 1r18_A           81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNT  136 (227)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHh
Confidence            3567899999999999999999875 4       4899999999999999998766

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=97.84  E-value=4.7e-05  Score=66.43  Aligned_cols=60  Identities=17%  Similarity=0.083  Sum_probs=46.6

Q ss_pred             hHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          53 DHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        53 ~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +...+++.+...+.++.+|||+|||+|.++..+++.  ...+++++|+++.+++.+++....
T Consensus        20 l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~   79 (313)
T 3bgv_A           20 LIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYED   79 (313)
T ss_dssp             HHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHH
Confidence            345555666544568899999999999999988873  246899999999999999987754

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.84  E-value=0.00019  Score=61.12  Aligned_cols=102  Identities=14%  Similarity=-0.007  Sum_probs=67.7

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHc-CCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEc-CCCCCCCCCCCe
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYM-GAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA-DGRRGYPDAAPY  203 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~-~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~f  203 (299)
                      ..+.++..|||+||++|.++..++.. |.. |+++|+-..--+..+ .+++     .....+.+..+ |+....+  .++
T Consensus        90 ~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~q-----l~w~lV~~~~~~Dv~~l~~--~~~  161 (321)
T 3lkz_A           90 RFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQS-----YGWNIVTMKSGVDVFYRPS--ECC  161 (321)
T ss_dssp             TSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCB-----TTGGGEEEECSCCTTSSCC--CCC
T ss_pred             cCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhh-----cCCcceEEEeccCHhhCCC--CCC
Confidence            45678889999999999999977665 655 999999643110000 0001     22345778877 7655433  569


Q ss_pred             eEEEecchh-------h-----hHHHHHHHhccCC-cEEEEEecCC
Q psy7837         204 DVIYISQAI-------R-----DIPWHIVDQLKLG-GRMLFIKGHE  236 (299)
Q Consensus       204 D~v~~~~~~-------~-----~~~~~~~~~L~~g-G~lv~~~~~~  236 (299)
                      |.|+|+..-       +     .+.+-+..+|+++ |.+++-+..+
T Consensus       162 D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p  207 (321)
T 3lkz_A          162 DTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP  207 (321)
T ss_dssp             SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred             CEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence            999998751       0     1233456788888 8999988766

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=97.83  E-value=3.4e-05  Score=62.56  Aligned_cols=47  Identities=17%  Similarity=0.317  Sum_probs=41.1

Q ss_pred             cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .+.++ +|||+|||+|.++..+++.   ..+++++|+++.+++.+++....
T Consensus        27 ~~~~~-~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~   73 (202)
T 2kw5_A           27 QIPQG-KILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQE   73 (202)
T ss_dssp             HSCSS-EEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHH
T ss_pred             hCCCC-CEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHh
Confidence            36677 9999999999999999876   24899999999999999988765

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=97.83  E-value=2.8e-05  Score=64.78  Aligned_cols=45  Identities=27%  Similarity=0.381  Sum_probs=38.7

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~  172 (299)
                      .+.++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.+.++
T Consensus        74 ~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~  121 (233)
T 2ipx_A           74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINL  121 (233)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHH
T ss_pred             cCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHH
Confidence            4567899999999999999999887   36899999999988877643

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=97.83  E-value=3.5e-05  Score=63.41  Aligned_cols=52  Identities=21%  Similarity=0.325  Sum_probs=43.4

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~  111 (299)
                      ..+++.+.  ..++.+|||+|||+|.++..+++.   ..+++++|+++.+++.+++.
T Consensus        42 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~   93 (227)
T 3e8s_A           42 QAILLAIL--GRQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA   93 (227)
T ss_dssp             HHHHHHHH--HTCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT
T ss_pred             HHHHHHhh--cCCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh
Confidence            44556655  567799999999999999999887   34799999999999988876

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.83  E-value=0.00012  Score=65.63  Aligned_cols=100  Identities=14%  Similarity=0.053  Sum_probs=66.3

Q ss_pred             CCeEEEEcCCCcHHHHHHHHc-------------------CCeEEEEeCC-----------hHHHHHHHHHHHhcCCccc
Q psy7837         132 GSKVLDIGSGSGYLSALFAYM-------------------GAKVYAIEHV-----------KNLCKRAMKNIRRGAPAIA  181 (299)
Q Consensus       132 ~~~vLDiG~G~G~~~~~la~~-------------------~~~v~~~D~~-----------~~~~~~a~~~~~~~~~~~~  181 (299)
                      ..+|+|+||++|.+++.+...                   ..+|+..|+-           +...+.+++.  .     +
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~--~-----g  125 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKE--N-----G  125 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHH--T-----C
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhh--c-----c
Confidence            478999999999999876543                   1357888875           2222222111  1     1


Q ss_pred             CCCCeEEEEcCCCC---CCCCCCCeeEEEecchhhhHHH-----------------------------------------
Q psy7837         182 LAENFEFVCADGRR---GYPDAAPYDVIYISQAIRDIPW-----------------------------------------  217 (299)
Q Consensus       182 ~~~~v~~~~~d~~~---~~~~~~~fD~v~~~~~~~~~~~-----------------------------------------  217 (299)
                      ...+.-|+.+....   .+.+.+++|+|+++.+++|+.+                                         
T Consensus       126 ~~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~  205 (384)
T 2efj_A          126 RKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFT  205 (384)
T ss_dssp             CCTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHH
Confidence            11234566665443   3455689999999999887421                                         


Q ss_pred             ----HHHHhccCCcEEEEEecCCCC
Q psy7837         218 ----HIVDQLKLGGRMLFIKGHEDD  238 (299)
Q Consensus       218 ----~~~~~L~~gG~lv~~~~~~~~  238 (299)
                          .-.+.|+|||++++.+.....
T Consensus       206 ~FL~~Ra~eL~pGG~mvl~~~gr~~  230 (384)
T 2efj_A          206 TFLRIHSEELISRGRMLLTFICKED  230 (384)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEECCCT
T ss_pred             HHHHHHHHHhccCCeEEEEEecCCC
Confidence                116899999999999877654

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=97.83  E-value=4.4e-05  Score=64.72  Aligned_cols=53  Identities=26%  Similarity=0.373  Sum_probs=42.8

Q ss_pred             HHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Q psy7837          57 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV  112 (299)
Q Consensus        57 ~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l  112 (299)
                      +.+.+...+.++.+|||+|||+|.++..+++.   ..+++++|+++.+++.+++..
T Consensus        44 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~   96 (260)
T 2avn_A           44 IGSFLEEYLKNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKG   96 (260)
T ss_dssp             HHHHHHHHCCSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhc
Confidence            34444444458899999999999999999876   247999999999999888764

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=97.82  E-value=4.3e-05  Score=65.04  Aligned_cols=57  Identities=26%  Similarity=0.387  Sum_probs=45.6

Q ss_pred             HHHHHHHhccC-CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHL-KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV  112 (299)
Q Consensus        55 ~~~~~~l~~~~-~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l  112 (299)
                      ..+.+.+...+ .++.+|||+|||+|.++..+++.+ +..+++++|+++.+++.+++..
T Consensus        72 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~  129 (269)
T 1p91_A           72 DAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY  129 (269)
T ss_dssp             HHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhC
Confidence            34444544433 688999999999999999999876 2458999999999999888764

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=97.82  E-value=3.5e-05  Score=64.31  Aligned_cols=56  Identities=20%  Similarity=0.302  Sum_probs=45.2

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      ...+++.+.. ..++.+|||+|||+|.++..+++...   +++++|+++.+++.+++...
T Consensus        30 ~~~~~~~l~~-~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~   85 (250)
T 2p7i_A           30 HPFMVRAFTP-FFRPGNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLK   85 (250)
T ss_dssp             HHHHHHHHGG-GCCSSCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSC
T ss_pred             HHHHHHHHHh-hcCCCcEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhh
Confidence            3556666653 45788999999999999999987643   69999999999999887653

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=97.82  E-value=2.7e-05  Score=63.15  Aligned_cols=38  Identities=21%  Similarity=0.213  Sum_probs=34.8

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCC-CceEEEEeCCH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGI-SGKVYTIEHIP  102 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~-~g~v~~~d~~~  102 (299)
                      ++++.+|||+|||+|.++..+++..++ .++++++|+++
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~   58 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKI   58 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCc
Confidence            688999999999999999999998864 68999999998

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=97.81  E-value=5.3e-05  Score=65.07  Aligned_cols=55  Identities=18%  Similarity=0.225  Sum_probs=46.6

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+++.+.  ..++.+|||+|||+|.++..+++. +  .+++++|+++.+++.+++.+..
T Consensus       110 ~~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~-g--~~v~~vD~s~~~~~~a~~~~~~  164 (286)
T 3m70_A          110 GDVVDAAK--IISPCKVLDLGCGQGRNSLYLSLL-G--YDVTSWDHNENSIAFLNETKEK  164 (286)
T ss_dssp             HHHHHHHH--HSCSCEEEEESCTTCHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHhh--ccCCCcEEEECCCCCHHHHHHHHC-C--CeEEEEECCHHHHHHHHHHHHH
Confidence            45556665  448899999999999999999987 2  3799999999999999998876

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=97.80  E-value=6.6e-05  Score=64.45  Aligned_cols=46  Identities=17%  Similarity=0.277  Sum_probs=40.7

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .++.+|||+|||+|.++..+++.   ..+++++|+++.+++.+++.+..
T Consensus        67 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~  112 (285)
T 4htf_A           67 PQKLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEA  112 (285)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC
T ss_pred             CCCCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHh
Confidence            44789999999999999999987   34799999999999999988765

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=97.80  E-value=4.7e-05  Score=68.32  Aligned_cols=57  Identities=16%  Similarity=0.294  Sum_probs=47.6

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.+++.+.  ..++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++..
T Consensus       212 ~~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~  268 (375)
T 4dcm_A          212 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVET  268 (375)
T ss_dssp             HHHHHTCC--CSCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHhCc--ccCCCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHH
Confidence            34555554  4567899999999999999999875 346899999999999999999876

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=97.80  E-value=5e-05  Score=65.42  Aligned_cols=56  Identities=20%  Similarity=0.208  Sum_probs=45.0

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ...+.+.+.  ..++.+|||+|||+|.++..+++..   .+++++|+++.+++.++++...
T Consensus        46 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~  101 (293)
T 3thr_A           46 KAWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEEG---FSVTSVDASDKMLKYALKERWN  101 (293)
T ss_dssp             HHHHHHHHH--HTTCCEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhc--ccCCCEEEEecCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHhhhh
Confidence            344444444  4688999999999999999998873   3899999999999999887643

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.79  E-value=3.3e-05  Score=62.30  Aligned_cols=40  Identities=23%  Similarity=0.303  Sum_probs=35.7

Q ss_pred             cCCCCCEEEEEccCCCHHHHHHHHHhCCC--------ceEEEEeCCHH
Q psy7837          64 HLKYGDKVLEIGTGSGYLTTLFGAMVGIS--------GKVYTIEHIPE  103 (299)
Q Consensus        64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~--------g~v~~~d~~~~  103 (299)
                      .++++.+|||+|||+|.++..+++..+..        ++++++|+++.
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~   66 (196)
T 2nyu_A           19 ILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI   66 (196)
T ss_dssp             CCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc
Confidence            36889999999999999999999998754        79999999983

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=97.79  E-value=3.6e-05  Score=66.65  Aligned_cols=56  Identities=27%  Similarity=0.240  Sum_probs=44.5

Q ss_pred             hHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          53 DHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        53 ~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ....+++.+.  . ++.+|||+|||+|.++..+++..   .+++++|+++.+++.+++++..
T Consensus        71 ~~~~~~~~~~--~-~~~~vLDlGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~  126 (299)
T 3g2m_A           71 EAREFATRTG--P-VSGPVLELAAGMGRLTFPFLDLG---WEVTALELSTSVLAAFRKRLAE  126 (299)
T ss_dssp             HHHHHHHHHC--C-CCSCEEEETCTTTTTHHHHHTTT---CCEEEEESCHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhC--C-CCCcEEEEeccCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHhh
Confidence            3445555543  2 34499999999999999999872   4799999999999999998875

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=97.79  E-value=2.1e-05  Score=65.51  Aligned_cols=43  Identities=14%  Similarity=0.206  Sum_probs=36.7

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCC-HHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHI-PELLEAA  108 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~-~~~~~~a  108 (299)
                      .+++++|||+|||+|.++..+++.. +..+++|+|++ +.|++.|
T Consensus        22 ~~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GvD~s~~~ml~~A   65 (225)
T 3p2e_A           22 GQFDRVHIDLGTGDGRNIYKLAIND-QNTFYIGIDPVKENLFDIS   65 (225)
T ss_dssp             TTCSEEEEEETCTTSHHHHHHHHTC-TTEEEEEECSCCGGGHHHH
T ss_pred             CCCCCEEEEEeccCcHHHHHHHHhC-CCCEEEEEeCCHHHHHHHH
Confidence            5789999999999999999998653 45789999999 7777766

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=97.79  E-value=2.6e-05  Score=63.23  Aligned_cols=36  Identities=28%  Similarity=0.520  Sum_probs=32.7

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPE  103 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~  103 (299)
                      +++|.+|||+|||+|.++..+++.   .++|+++|+++.
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~   58 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEM   58 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCC
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEecccc
Confidence            689999999999999999999987   578999999864

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=97.79  E-value=4.5e-05  Score=65.10  Aligned_cols=49  Identities=33%  Similarity=0.432  Sum_probs=44.1

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++..
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~   83 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEK   83 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence            5789999999999999999999884 457999999999999999998865

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=97.78  E-value=1.3e-05  Score=68.21  Aligned_cols=49  Identities=18%  Similarity=0.158  Sum_probs=39.3

Q ss_pred             cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ...+|.+|||+|||+|.++..++....  .+|+++|+++.+++.+++.+..
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~--~~v~g~D~s~~~l~~a~~~~~~  100 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKK  100 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHhhh--cceeeccccHHHHHHHHHHHhc
Confidence            356889999999999988776554321  3799999999999999987654

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=97.78  E-value=8e-05  Score=60.58  Aligned_cols=58  Identities=19%  Similarity=0.119  Sum_probs=44.0

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ...+++.+. ...++.+|||+|||+|..+..+....  ..+++++|+++.+++.+++.+..
T Consensus        11 ~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~   68 (209)
T 2p8j_A           11 LYRFLKYCN-ESNLDKTVLDCGAGGDLPPLSIFVED--GYKTYGIEISDLQLKKAENFSRE   68 (209)
T ss_dssp             HHHHHHHHH-HSSSCSEEEEESCCSSSCTHHHHHHT--TCEEEEEECCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh-ccCCCCEEEEECCCCCHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHh
Confidence            345555554 36788999999999999855443333  34899999999999999988765

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=97.78  E-value=3.5e-05  Score=64.41  Aligned_cols=46  Identities=17%  Similarity=0.216  Sum_probs=39.7

Q ss_pred             ccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837          63 GHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        63 ~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~  111 (299)
                      ..++++.+|||+|||+|.++..+++..   .+++++|+++.+++.+++.
T Consensus        37 ~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~   82 (240)
T 3dli_A           37 PYFKGCRRVLDIGCGRGEFLELCKEEG---IESIGVDINEDMIKFCEGK   82 (240)
T ss_dssp             GGTTTCSCEEEETCTTTHHHHHHHHHT---CCEEEECSCHHHHHHHHTT
T ss_pred             hhhcCCCeEEEEeCCCCHHHHHHHhCC---CcEEEEECCHHHHHHHHhh
Confidence            346789999999999999999998872   3699999999999988765

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=97.77  E-value=3.3e-05  Score=66.58  Aligned_cols=57  Identities=9%  Similarity=0.109  Sum_probs=41.3

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      ..+.+.+.....++.+|||+|||+|..+..++...  ..+|+++|+++.+++.+++.+.
T Consensus        59 ~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~--~~~v~gvD~s~~~l~~a~~~~~  115 (289)
T 2g72_A           59 RCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQ  115 (289)
T ss_dssp             HHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccC--CCeEEEeCCCHHHHHHHHHHHh
Confidence            34445554333478999999999999554444432  2489999999999999988654

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=97.77  E-value=6e-05  Score=68.98  Aligned_cols=58  Identities=19%  Similarity=0.310  Sum_probs=46.9

Q ss_pred             HHHHHHHHhcc--CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          54 HCLVLELLSGH--LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        54 ~~~~~~~l~~~--~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ...+++.+.+.  +.++++|||+|||+|.++..+++.   ..+++++|+++.+++.|++++..
T Consensus       271 ~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~  330 (433)
T 1uwv_A          271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARL  330 (433)
T ss_dssp             HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHH
Confidence            34444444322  567899999999999999999987   35899999999999999998865

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=97.77  E-value=3.9e-05  Score=63.50  Aligned_cols=47  Identities=26%  Similarity=0.384  Sum_probs=42.0

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ++++.+|||+|||+|.++..+++.   ..+++++|+++.+++.+++.+..
T Consensus        28 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~   74 (235)
T 3sm3_A           28 LQEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARS   74 (235)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTC
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHh
Confidence            678999999999999999999987   34899999999999999987754

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=97.76  E-value=4.4e-05  Score=64.18  Aligned_cols=48  Identities=19%  Similarity=0.287  Sum_probs=41.8

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..++.+|||+|||+|.++..+++..  ..+++++|+++.+++.+++.+..
T Consensus        91 ~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~  138 (254)
T 1xtp_A           91 GHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAG  138 (254)
T ss_dssp             TCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTT
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhcc
Confidence            4578999999999999999998876  35799999999999999887654

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=97.76  E-value=4e-05  Score=65.75  Aligned_cols=66  Identities=20%  Similarity=0.161  Sum_probs=51.0

Q ss_pred             cccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          46 AFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        46 ~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+-+|.....- .++...+++|++|||+|||+|.++..++....  .+|+++|+++..++.+++++..
T Consensus       105 k~~f~~~~~~er-~ri~~~~~~g~~VlD~~aG~G~~~i~~a~~g~--~~V~avD~np~a~~~~~~N~~~  170 (278)
T 3k6r_A          105 KIMFSPANVKER-VRMAKVAKPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHL  170 (278)
T ss_dssp             TSCCCGGGHHHH-HHHHHHCCTTCEEEETTCTTTTTTHHHHHHTC--CEEEEECCCHHHHHHHHHHHHH
T ss_pred             ceEEcCCcHHHH-HHHHHhcCCCCEEEEecCcCcHHHHHHHHhcC--CeEEEEECCHHHHHHHHHHHHH
Confidence            344455543222 33444588999999999999999999987642  4899999999999999999876

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=97.76  E-value=1.9e-05  Score=66.03  Aligned_cols=54  Identities=20%  Similarity=0.217  Sum_probs=41.8

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~  111 (299)
                      ..+++.+.. -.+|.+|||+|||+|.++..+++. + ..+|+++|+++.+++.++++
T Consensus        26 ~~~L~~~~~-~~~g~~VLDiGcGtG~~t~~la~~-g-~~~V~gvDis~~ml~~a~~~   79 (232)
T 3opn_A           26 EKALKEFHL-EINGKTCLDIGSSTGGFTDVMLQN-G-AKLVYALDVGTNQLAWKIRS   79 (232)
T ss_dssp             HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEECSSCCCCCHHHHT
T ss_pred             HHHHHHcCC-CCCCCEEEEEccCCCHHHHHHHhc-C-CCEEEEEcCCHHHHHHHHHh
Confidence            455555541 235779999999999999999887 3 24899999999999887664

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=97.75  E-value=7.8e-05  Score=62.12  Aligned_cols=58  Identities=17%  Similarity=0.283  Sum_probs=46.5

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ...+.+.+.....++.+|||+|||+|.++..+++..   .+++++|+++.+++.+++.+..
T Consensus        24 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~s~~~~~~a~~~~~~   81 (246)
T 1y8c_A           24 SDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRS   81 (246)
T ss_dssp             HHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCC---CcEEEEECCHHHHHHHHHHHhh
Confidence            344555555333478999999999999999998862   4799999999999999988765

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=97.75  E-value=4.6e-05  Score=64.80  Aligned_cols=49  Identities=20%  Similarity=0.281  Sum_probs=43.6

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.++.+|||+|||+|.++..+++... ..+++++|+++.+++.+++++..
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~   82 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLEL   82 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTS
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHh
Confidence            67889999999999999999998863 46899999999999999988754

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=97.74  E-value=7e-05  Score=65.19  Aligned_cols=46  Identities=15%  Similarity=0.086  Sum_probs=36.9

Q ss_pred             CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          67 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        67 ~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ++.+|||+|||+|..+..++..-  ..+|+|+|+++.+++.|++....
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~--~~~v~GiD~S~~~l~~A~~~~~~   93 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGE--IALLVATDPDADAIARGNERYNK   93 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEecCCcHhHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHh
Confidence            58899999999997665444322  35799999999999999987754

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=97.73  E-value=6.1e-05  Score=67.73  Aligned_cols=57  Identities=32%  Similarity=0.419  Sum_probs=47.4

Q ss_pred             HHHHHHHhccC----CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHL----KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~----~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.+++.+...+    .++.+|||+|||+|.++..+++.   ..+++++|+++.+++.+++++..
T Consensus       217 ~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~~n~~~  277 (381)
T 3dmg_A          217 LLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEA  277 (381)
T ss_dssp             HHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHH
Confidence            45556664433    47899999999999999999987   24899999999999999999876

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=97.73  E-value=7.4e-05  Score=64.27  Aligned_cols=57  Identities=23%  Similarity=0.384  Sum_probs=45.2

Q ss_pred             HHHHHHHhcc--CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeC-CHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGH--LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEH-IPELLEAARKRVK  113 (299)
Q Consensus        55 ~~~~~~l~~~--~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~-~~~~~~~a~~~l~  113 (299)
                      ..+.+.+...  ..++.+|||+|||+|.++..+++. + .++|+++|+ ++.+++.++++..
T Consensus        65 ~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~-~-~~~v~~~D~s~~~~~~~a~~n~~  124 (281)
T 3bzb_A           65 RALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLA-G-ADQVVATDYPDPEILNSLESNIR  124 (281)
T ss_dssp             HHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHT-T-CSEEEEEECSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHc-C-CCEEEEEeCCCHHHHHHHHHHHH
Confidence            3444555433  368899999999999999988875 2 358999999 8999999999883

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=97.73  E-value=5e-05  Score=72.02  Aligned_cols=88  Identities=14%  Similarity=0.134  Sum_probs=60.0

Q ss_pred             HHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEE
Q psy7837          58 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLD  137 (299)
Q Consensus        58 ~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLD  137 (299)
                      ...+...+..+-+|||||||.|.++..+++..   ..|+|+|.++.+++.|+....+.                +..-++
T Consensus        57 ~~~~~~~~~~~~~vLDvGCG~G~~~~~la~~g---a~V~giD~~~~~i~~a~~~a~~~----------------~~~~~~  117 (569)
T 4azs_A           57 YDNLSRALGRPLNVLDLGCAQGFFSLSLASKG---ATIVGIDFQQENINVCRALAEEN----------------PDFAAE  117 (569)
T ss_dssp             HHHHHHHHTSCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHTS----------------TTSEEE
T ss_pred             HHHHHhhcCCCCeEEEECCCCcHHHHHHHhCC---CEEEEECCCHHHHHHHHHHHHhc----------------CCCceE
Confidence            34444445677899999999999999999864   36999999999999999877652                323356


Q ss_pred             EcCCCcHHHHHHHHcC-Ce-EEEEeCChH
Q psy7837         138 IGSGSGYLSALFAYMG-AK-VYAIEHVKN  164 (299)
Q Consensus       138 iG~G~G~~~~~la~~~-~~-v~~~D~~~~  164 (299)
                      .=|++-.-.......+ .+ |++.+.-+.
T Consensus       118 ~~~~~~~~~~~~~~~~~fD~v~~~e~~eh  146 (569)
T 4azs_A          118 FRVGRIEEVIAALEEGEFDLAIGLSVFHH  146 (569)
T ss_dssp             EEECCHHHHHHHCCTTSCSEEEEESCHHH
T ss_pred             EEECCHHHHhhhccCCCccEEEECcchhc
Confidence            6666543222211112 33 778877544

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=97.72  E-value=3.2e-05  Score=63.45  Aligned_cols=47  Identities=23%  Similarity=0.304  Sum_probs=41.3

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..++.+|||+|||+|.++..+++..   .+++++|+++.+++.+++.+..
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~   95 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKR   95 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTT
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhccc
Confidence            5678899999999999999998874   4799999999999999987754

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=97.72  E-value=2e-05  Score=66.04  Aligned_cols=35  Identities=17%  Similarity=0.213  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc------CCeEEEEeCChHH
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM------GAKVYAIEHVKNL  165 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~------~~~v~~~D~~~~~  165 (299)
                      ++.+|||||||+|..+..+++.      +.+|+++|+++.+
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~  121 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSR  121 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTT
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHH
Confidence            4689999999999999999886      6889999999865

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=97.72  E-value=4e-05  Score=64.11  Aligned_cols=58  Identities=16%  Similarity=0.111  Sum_probs=45.0

Q ss_pred             HHHHHHHhccC---CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHL---KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~---~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+++.+...+   .++.+|||+|||+|.++..+++..  ..+++++|+++.+++.+++++..
T Consensus        64 ~~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~  124 (241)
T 2ex4_A           64 RKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGE  124 (241)
T ss_dssp             HHHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGG
T ss_pred             HHHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhh
Confidence            34444444332   368999999999999999988765  35899999999999999988765

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=97.71  E-value=6e-05  Score=62.75  Aligned_cols=46  Identities=15%  Similarity=0.069  Sum_probs=39.0

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .++.+|||+|||+|.++..+++.   ..+++++|+++.+++.+++.+..
T Consensus        65 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~  110 (235)
T 3lcc_A           65 LPLGRALVPGCGGGHDVVAMASP---ERFVVGLDISESALAKANETYGS  110 (235)
T ss_dssp             SCCEEEEEETCTTCHHHHHHCBT---TEEEEEECSCHHHHHHHHHHHTT
T ss_pred             CCCCCEEEeCCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHhhc
Confidence            34459999999999999988763   45799999999999999988754

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=97.71  E-value=1.9e-05  Score=67.34  Aligned_cols=97  Identities=14%  Similarity=0.037  Sum_probs=74.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC----CCCCCCeeEE
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG----YPDAAPYDVI  206 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~v  206 (299)
                      .+..+||+.+|||.+++.+.+.+.+++.+|.++..++..++|++.       ..+++++..|+...    .++..+||+|
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~-------~~~~~V~~~D~~~~L~~l~~~~~~fdLV  163 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHF-------NKKVYVNHTDGVSKLNALLPPPEKRGLI  163 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCT-------TSCEEEECSCHHHHHHHHCSCTTSCEEE
T ss_pred             cCCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCc-------CCcEEEEeCcHHHHHHHhcCCCCCccEE
Confidence            466799999999999999999888899999999999999998754       36799999997631    2333569999


Q ss_pred             Eecchhhh--HHH----HHHH--hccCCcEEEEEec
Q psy7837         207 YISQAIRD--IPW----HIVD--QLKLGGRMLFIKG  234 (299)
Q Consensus       207 ~~~~~~~~--~~~----~~~~--~L~~gG~lv~~~~  234 (299)
                      +++++...  ..+    .+.+  .+.++|++++=.+
T Consensus       164 fiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYP  199 (283)
T 2oo3_A          164 FIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYP  199 (283)
T ss_dssp             EECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred             EECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEe
Confidence            99999862  222    2322  4567888887443

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=97.70  E-value=6.4e-05  Score=60.97  Aligned_cols=42  Identities=24%  Similarity=0.424  Sum_probs=37.5

Q ss_pred             CCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Q psy7837          68 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV  112 (299)
Q Consensus        68 g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l  112 (299)
                      +.+|||+|||+|.++..+++..   .+++++|+++.+++.++++.
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~   83 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLG---HQIEGLEPATRLVELARQTH   83 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTT---CCEEEECCCHHHHHHHHHHC
T ss_pred             CCeEEEecCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhC
Confidence            8899999999999999999872   37999999999999888763

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=97.69  E-value=6.7e-05  Score=63.13  Aligned_cols=46  Identities=22%  Similarity=0.321  Sum_probs=40.0

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      .++.+|||+|||+|.++..+++...  .+++++|+++.+++.+++...
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~   88 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHGA--KKVLGIDLSERMLTEAKRKTT   88 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHCC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhhc
Confidence            4789999999999999999988743  289999999999999887653

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=97.69  E-value=8.5e-05  Score=59.43  Aligned_cols=46  Identities=22%  Similarity=0.366  Sum_probs=40.6

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      +.++.+|||+|||+|.++..+++.   ..+++++|+++.+++.+++++.
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~~   89 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDFP   89 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHCT
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhCC
Confidence            678999999999999999999987   3489999999999999887653

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=97.69  E-value=8.1e-05  Score=65.88  Aligned_cols=47  Identities=23%  Similarity=0.410  Sum_probs=40.7

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.++.+|||+|||+|.++..+++. + ..+++++|+++ +++.+++++..
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~gvD~s~-~~~~a~~~~~~  108 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKA-G-AKKVLGVDQSE-ILYQAMDIIRL  108 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESST-HHHHHHHHHHH
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHc-C-CCEEEEEChHH-HHHHHHHHHHH
Confidence            678999999999999999999986 3 35899999997 88988887765

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=97.68  E-value=9.7e-05  Score=67.39  Aligned_cols=59  Identities=20%  Similarity=0.230  Sum_probs=49.3

Q ss_pred             chHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          52 SDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        52 ~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .....+.+.+.. +.++.+|||+|||+|.++..+++..   .+|+++|+++.+++.+++++..
T Consensus       276 ~~~e~l~~~~~~-~~~~~~VLDlgcG~G~~sl~la~~~---~~V~gvD~s~~ai~~A~~n~~~  334 (425)
T 2jjq_A          276 YQAVNLVRKVSE-LVEGEKILDMYSGVGTFGIYLAKRG---FNVKGFDSNEFAIEMARRNVEI  334 (425)
T ss_dssp             HHHHHHHHHHHH-HCCSSEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc-cCCCCEEEEeeccchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHH
Confidence            344566666655 7889999999999999999999863   4799999999999999998865

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.68  E-value=6.3e-05  Score=66.75  Aligned_cols=102  Identities=13%  Similarity=0.093  Sum_probs=71.4

Q ss_pred             CCeEEEEcCCCcHHHHHHHHc------------C------CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCC
Q psy7837         132 GSKVLDIGSGSGYLSALFAYM------------G------AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADG  193 (299)
Q Consensus       132 ~~~vLDiG~G~G~~~~~la~~------------~------~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  193 (299)
                      .-+|+|+||++|.+++.+...            +      .+|+..|+-.+....+.+.+...    ....+.-|+.+..
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~----~~~~~~~f~~gvp  127 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIE----NDVDGVCFINGVP  127 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTS----CSCTTCEEEEEEE
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchh----cccCCCEEEEecc
Confidence            468999999999988765332            2      45999999888887777765431    0001334555443


Q ss_pred             C---CCCCCCCCeeEEEecchhhhHH---------------------------------------HHHHHhccCCcEEEE
Q psy7837         194 R---RGYPDAAPYDVIYISQAIRDIP---------------------------------------WHIVDQLKLGGRMLF  231 (299)
Q Consensus       194 ~---~~~~~~~~fD~v~~~~~~~~~~---------------------------------------~~~~~~L~~gG~lv~  231 (299)
                      .   ..+.+.+++|+|+++.+++|+.                                       +.-.+.|+|||++++
T Consensus       128 gSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl  207 (359)
T 1m6e_X          128 GSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL  207 (359)
T ss_dssp             SCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred             hhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence            3   3455668999999999988743                                       223889999999999


Q ss_pred             EecCCC
Q psy7837         232 IKGHED  237 (299)
Q Consensus       232 ~~~~~~  237 (299)
                      ......
T Consensus       208 ~~~gr~  213 (359)
T 1m6e_X          208 TILGRR  213 (359)
T ss_dssp             EEEECS
T ss_pred             EEecCC
Confidence            987554

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=97.67  E-value=3.2e-05  Score=66.71  Aligned_cols=42  Identities=17%  Similarity=0.113  Sum_probs=35.8

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAAR  109 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~  109 (299)
                      .+|.+|||+|||+|.+|..+++..  .++|+++|+++.|++.+.
T Consensus        84 ~~g~~vLDiGcGTG~~t~~L~~~g--a~~V~aVDvs~~mL~~a~  125 (291)
T 3hp7_A           84 VEDMITIDIGASTGGFTDVMLQNG--AKLVYAVDVGTNQLVWKL  125 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTT--CSEEEEECSSSSCSCHHH
T ss_pred             ccccEEEecCCCccHHHHHHHhCC--CCEEEEEECCHHHHHHHH
Confidence            367899999999999999988862  358999999999988754

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=97.67  E-value=0.00016  Score=65.31  Aligned_cols=51  Identities=14%  Similarity=0.169  Sum_probs=43.5

Q ss_pred             HhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          61 LSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        61 l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +...+++|.+|||+|||+|.++..++.. +.  .|+++|+++.+++.+++++..
T Consensus       208 l~~~~~~g~~VLDlg~GtG~~sl~~a~~-ga--~V~avDis~~al~~a~~n~~~  258 (393)
T 4dmg_A          208 FEAMVRPGERVLDVYSYVGGFALRAARK-GA--YALAVDKDLEALGVLDQAALR  258 (393)
T ss_dssp             HHTTCCTTCEEEEESCTTTHHHHHHHHT-TC--EEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCeEEEcccchhHHHHHHHHc-CC--eEEEEECCHHHHHHHHHHHHH
Confidence            3334567999999999999999999986 32  399999999999999999876

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=97.65  E-value=6.2e-05  Score=67.37  Aligned_cols=47  Identities=28%  Similarity=0.504  Sum_probs=38.9

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+|..|||||||+|.++.++++...  .+|+++|.++ +++.|++.+..
T Consensus        81 ~~~~k~VLDvG~GtGiLs~~Aa~aGA--~~V~ave~s~-~~~~a~~~~~~  127 (376)
T 4hc4_A           81 ALRGKTVLDVGAGTGILSIFCAQAGA--RRVYAVEASA-IWQQAREVVRF  127 (376)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECST-THHHHHHHHHH
T ss_pred             hcCCCEEEEeCCCccHHHHHHHHhCC--CEEEEEeChH-HHHHHHHHHHH
Confidence            45799999999999999988887543  4899999996 77888887765

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=97.64  E-value=0.00016  Score=61.94  Aligned_cols=66  Identities=20%  Similarity=0.283  Sum_probs=47.3

Q ss_pred             cccCCcchHHHHHHHHhccCCCCCEEEEEccCCCH----HHHHHHHHhCC---CceEEEEeCCHHHHHHHHHHH
Q psy7837          46 AFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGY----LTTLFGAMVGI---SGKVYTIEHIPELLEAARKRV  112 (299)
Q Consensus        46 ~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~----~~~~la~~~~~---~g~v~~~d~~~~~~~~a~~~l  112 (299)
                      .+...|.....+-+.+... .++.+|||+|||+|.    ++..+++..+.   ..+++|+|+++.+++.|++..
T Consensus        85 ~FfRd~~~f~~l~~~llp~-~~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~  157 (274)
T 1af7_A           85 AFFREAHHFPILAEHARRR-HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGI  157 (274)
T ss_dssp             CTTTTTTHHHHHHHHHHHS-CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTE
T ss_pred             cccCChHHHHHHHHHccCC-CCCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcC
Confidence            3445555555555444432 345799999999998    56667776653   248999999999999999875

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=97.64  E-value=0.00017  Score=60.10  Aligned_cols=45  Identities=16%  Similarity=0.089  Sum_probs=40.4

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .+..+|||+|||.|-++..+.    +..+++++|+++.+++.+++++..
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~  148 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFARE  148 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHh
Confidence            678899999999999988776    567999999999999999999766

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=97.63  E-value=0.00012  Score=61.03  Aligned_cols=47  Identities=17%  Similarity=0.234  Sum_probs=40.2

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      ..++.+|||+|||+|.++..+++..  ..+++++|+++.+++.+++...
T Consensus        41 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~   87 (243)
T 3bkw_A           41 EVGGLRIVDLGCGFGWFCRWAHEHG--ASYVLGLDLSEKMLARARAAGP   87 (243)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHTSC
T ss_pred             ccCCCEEEEEcCcCCHHHHHHHHCC--CCeEEEEcCCHHHHHHHHHhcc
Confidence            5688999999999999999998862  2389999999999999887653

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=97.63  E-value=0.00012  Score=65.01  Aligned_cols=47  Identities=28%  Similarity=0.359  Sum_probs=39.6

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..++.+|||+|||+|.++..+++..  ..+|+++|+++ +++.+++.+..
T Consensus        48 ~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~   94 (348)
T 2y1w_A           48 DFKDKIVLDVGCGSGILSFFAAQAG--ARKIYAVEAST-MAQHAEVLVKS   94 (348)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEECST-HHHHHHHHHHH
T ss_pred             cCCcCEEEEcCCCccHHHHHHHhCC--CCEEEEECCHH-HHHHHHHHHHH
Confidence            5789999999999999999998852  35899999996 77888877654

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=97.63  E-value=9.2e-05  Score=63.43  Aligned_cols=44  Identities=20%  Similarity=0.188  Sum_probs=39.1

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHc--C-CeEEEEeCChHHHHHHHHH
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYM--G-AKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~--~-~~v~~~D~~~~~~~~a~~~  172 (299)
                      ..++.+|||+|||+|..+..++..  + .+|+++|+++.+++.++++
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~  127 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSN  127 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHH
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHH
Confidence            467899999999999999999874  4 7899999999999988875

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=97.62  E-value=0.00017  Score=62.01  Aligned_cols=48  Identities=27%  Similarity=0.395  Sum_probs=42.1

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.++.+|||+|||+|.++..+++..  .++++++|+++.+++.+++.+..
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~  109 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARN  109 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHh
Confidence            6889999999999999999888752  35899999999999999988764

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=97.57  E-value=0.00012  Score=57.41  Aligned_cols=41  Identities=20%  Similarity=0.400  Sum_probs=36.8

Q ss_pred             cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHH
Q psy7837          64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELL  105 (299)
Q Consensus        64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~  105 (299)
                      .++++.+|||+|||+|.++..+++.+++..+++++|+++ +.
T Consensus        19 ~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~   59 (180)
T 1ej0_A           19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MD   59 (180)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CC
T ss_pred             CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cc
Confidence            367899999999999999999999987778999999998 64

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=97.57  E-value=0.00013  Score=64.20  Aligned_cols=47  Identities=26%  Similarity=0.437  Sum_probs=40.1

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.++.+|||+|||+|.++..+++. + ..+++++|++ .+++.+++.+..
T Consensus        36 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~~vD~s-~~~~~a~~~~~~   82 (328)
T 1g6q_1           36 LFKDKIVLDVGCGTGILSMFAAKH-G-AKHVIGVDMS-SIIEMAKELVEL   82 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHT-C-CSEEEEEESS-THHHHHHHHHHH
T ss_pred             hcCCCEEEEecCccHHHHHHHHHC-C-CCEEEEEChH-HHHHHHHHHHHH
Confidence            568899999999999999999886 2 3589999999 588888888765

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.56  E-value=0.00012  Score=63.93  Aligned_cols=57  Identities=16%  Similarity=0.200  Sum_probs=51.3

Q ss_pred             cchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Q psy7837          51 PSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAAR  109 (299)
Q Consensus        51 p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~  109 (299)
                      |-+...+++.|.  ++||+.++|.+||.|..|..+++.++++|+|+++|.++..++.++
T Consensus        43 pVLl~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~   99 (347)
T 3tka_A           43 TVLLDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK   99 (347)
T ss_dssp             CTTTHHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT
T ss_pred             cccHHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            445577788886  899999999999999999999999999999999999999999884

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=97.56  E-value=0.00023  Score=62.69  Aligned_cols=47  Identities=17%  Similarity=0.109  Sum_probs=41.5

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..++.+|||+|||+|.++..++.. +.  +|+++|+++.+++.+++++..
T Consensus       151 ~~~~~~VLDlgcGtG~~sl~la~~-ga--~V~~VD~s~~al~~a~~n~~~  197 (332)
T 2igt_A          151 ADRPLKVLNLFGYTGVASLVAAAA-GA--EVTHVDASKKAIGWAKENQVL  197 (332)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHT-TC--EEEEECSCHHHHHHHHHHHHH
T ss_pred             cCCCCcEEEcccccCHHHHHHHHc-CC--EEEEEECCHHHHHHHHHHHHH
Confidence            357889999999999999999985 22  899999999999999999875

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=97.56  E-value=9.4e-05  Score=63.85  Aligned_cols=49  Identities=22%  Similarity=0.203  Sum_probs=37.7

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhC---CCceE--EEEeCCHHHHHHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVG---ISGKV--YTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~---~~g~v--~~~d~~~~~~~~a~~~l~~  114 (299)
                      .++.+|||||||+|.++..+...+.   +...+  +++|.++.|++.+++.+..
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~  104 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAK  104 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHh
Confidence            5678999999999988765443321   34444  9999999999999988764

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=97.56  E-value=0.00019  Score=58.53  Aligned_cols=49  Identities=29%  Similarity=0.497  Sum_probs=39.0

Q ss_pred             HHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Q psy7837          59 ELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV  112 (299)
Q Consensus        59 ~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l  112 (299)
                      +.+...+.++.+|||+|||+|.++..+    + ..+++++|+++.+++.+++..
T Consensus        28 ~~l~~~~~~~~~vLdiG~G~G~~~~~l----~-~~~v~~vD~s~~~~~~a~~~~   76 (211)
T 2gs9_A           28 RALKGLLPPGESLLEVGAGTGYWLRRL----P-YPQKVGVEPSEAMLAVGRRRA   76 (211)
T ss_dssp             HHHHTTCCCCSEEEEETCTTCHHHHHC----C-CSEEEEECCCHHHHHHHHHHC
T ss_pred             HHHHHhcCCCCeEEEECCCCCHhHHhC----C-CCeEEEEeCCHHHHHHHHHhC
Confidence            334444458899999999999998877    1 127999999999999888765

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=97.55  E-value=7.6e-05  Score=66.11  Aligned_cols=58  Identities=26%  Similarity=0.341  Sum_probs=47.7

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ...+++.+.  ..++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++..
T Consensus       185 ~~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~~~~~  242 (343)
T 2pjd_A          185 SQLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHS-PKIRLTLCDVSAPAVEASRATLAA  242 (343)
T ss_dssp             HHHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHC-TTCBCEEEESBHHHHHHHHHHHHH
T ss_pred             HHHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence            455555553  3467899999999999999998874 446899999999999999998876

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.54  E-value=0.00024  Score=60.38  Aligned_cols=46  Identities=17%  Similarity=0.126  Sum_probs=43.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHh
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRR  175 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~  175 (299)
                      .++..|||..||+|..+.++.++|.+++++|+++..++.++++++.
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~  256 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQ  256 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHh
Confidence            6789999999999999999999999999999999999999999876

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=97.54  E-value=9.7e-05  Score=62.76  Aligned_cols=47  Identities=15%  Similarity=0.115  Sum_probs=39.1

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCH-------HHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP-------ELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~-------~~~~~a~~~l~~  114 (299)
                      ..++.+|||+|||+|..+..+++..   ++|+++|+++       .+++.++++...
T Consensus        81 ~~~~~~VLDlgcG~G~~a~~lA~~g---~~V~~vD~s~~~~~ll~~~l~~a~~n~~~  134 (258)
T 2r6z_A           81 HTAHPTVWDATAGLGRDSFVLASLG---LTVTAFEQHPAVACLLSDGIRRALLNPET  134 (258)
T ss_dssp             GGGCCCEEETTCTTCHHHHHHHHTT---CCEEEEECCHHHHHHHHHHHHHHHHSHHH
T ss_pred             cCCcCeEEEeeCccCHHHHHHHHhC---CEEEEEECChhhhHHHHHHHHHHHhHHHh
Confidence            5678999999999999999999863   5799999999       777777665543

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=97.54  E-value=0.00013  Score=64.76  Aligned_cols=47  Identities=34%  Similarity=0.367  Sum_probs=41.0

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.++.+|||+|||+|.++..+++.  ...+++++|+++ +++.+++++..
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~--g~~~v~gvD~s~-~l~~a~~~~~~  110 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECSS-ISDYAVKIVKA  110 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHH
T ss_pred             cCCCCEEEEEeccchHHHHHHHHC--CCCEEEEECcHH-HHHHHHHHHHH
Confidence            568899999999999999999987  245899999995 99999888765

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=97.53  E-value=7e-05  Score=63.29  Aligned_cols=48  Identities=17%  Similarity=0.171  Sum_probs=40.6

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..++.+|||+|||+|.++..++....  .+++++|+++.+++.+++.+..
T Consensus        54 ~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~  101 (265)
T 2i62_A           54 AVKGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKK  101 (265)
T ss_dssp             SCCEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTT
T ss_pred             ccCCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhc
Confidence            46788999999999999988876532  4799999999999999887754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	299
d1i1na_	224	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	7e-18
d1i1na_	224	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	1e-12
d1r18a_	223	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	2e-16
d1r18a_	223	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	8e-09
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	3e-15
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	4e-13
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	9e-04
d1jg1a_	215	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	8e-13
d1vbfa_	224	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	2e-11
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	3e-11
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	4e-11
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	2e-09
d1o54a_	266	c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo	5e-08
d1o54a_	266	c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo	6e-08
d1dl5a1	213	c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methylt	1e-07
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	3e-07
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	3e-07
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	1e-06
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	0.004
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	2e-06
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	2e-06
d2oyra1	250	c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shi	3e-06
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	4e-06
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	5e-06
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	1e-05
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	4e-05
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	6e-05
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	0.001
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	2e-04
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	2e-04
d1g8aa_	227	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro	2e-04
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	5e-04
d2igta1	309	c.66.1.51 (A:1-309) Putative methyltransferase Atu	5e-04
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	8e-04
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	0.001
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	0.002
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	0.002
d2nxca1	254	c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT	0.003
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	0.004
d2i6ga1	198	c.66.1.44 (A:1-198) Putative methyltransferase Teh	0.004

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.4 bits (192), Expect = 7e-18
 Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 3/139 (2%)

Query: 125 FYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIA 181
            +  L  G+K LD+GSGSG L+A FA M     KV  I+H+K L   ++ N+R+  P + 
Sbjct: 70  LFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLL 129

Query: 182 LAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMT 241
            +   + V  DGR GY + APYD I++  A   +P  ++DQLK GGR++   G       
Sbjct: 130 SSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQM 189

Query: 242 LELLDKFVNGSVKTTVIHP 260
           LE  DK  +GS+K   +  
Sbjct: 190 LEQYDKLQDGSIKMKPLMG 208

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (155), Expect = 1e-12
 Identities = 33/75 (44%), Positives = 44/75 (58%)

Query: 37  DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVY 96
           D P +IG  A + +P  H   LELL   L  G K L++G+GSG LT  F  MVG +GKV 
Sbjct: 46  DSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVI 105

Query: 97  TIEHIPELLEAARKR 111
            I+HI EL++ +   
Sbjct: 106 GIDHIKELVDDSVNN 120

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 223

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 74.9 bits (183), Expect = 2e-16
 Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 8/144 (5%)

Query: 125 FYGHLVYGSKVLDIGSGSGYLSALFAYM--------GAKVYAIEHVKNLCKRAMKNIRRG 176
              HL  G+++LD+GSGSGYL+A F             ++  IEH   L +R+  N+   
Sbjct: 74  LRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTD 133

Query: 177 APAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHE 236
             ++  +     V  DGR+GYP  APY+ I++  A  D P  +++QL  GGR++   G +
Sbjct: 134 DRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVGPD 193

Query: 237 DDIMTLELLDKFVNGSVKTTVIHP 260
                ++  DK  NG V+ T +  
Sbjct: 194 GGSQYMQQYDKDANGKVEMTRLMG 217

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 223

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 52.5 bits (125), Expect = 8e-09
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 5/102 (4%)

Query: 37  DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISG--- 93
           D P  IG    + +P  H   LE L  HLK G ++L++G+GSGYLT  F   +   G   
Sbjct: 50  DAPQPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDA 109

Query: 94  --KVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGS 133
             ++  IEH  EL+  ++  +     + +           G 
Sbjct: 110 DTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGR 151

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.5 bits (177), Expect = 3e-15
 Identities = 28/140 (20%), Positives = 50/140 (35%), Gaps = 13/140 (9%)

Query: 34  TLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISG 93
            L D    +     +  P D  ++L ++   +  GD VLE G+GSG ++      VG  G
Sbjct: 67  ALEDYVVLMKRGTAITFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQG 124

Query: 94  KVYTIEHIPELLEAARKRVK--------AKAETYIKRINFYGHLVYGSKVLDIGSGSGYL 145
           +V + E   +  + A+K  K        +  E +   ++F    + G         S   
Sbjct: 125 RVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISG---ATEDIKSLTF 181

Query: 146 SALFAYMGAKVYAIEHVKNL 165
            A+   M      +      
Sbjct: 182 DAVALDMLNPHVTLPVFYPH 201

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 64.5 bits (156), Expect = 4e-13
 Identities = 26/148 (17%), Positives = 50/148 (33%), Gaps = 11/148 (7%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
               +D+G G+G ++   A    +VYAI+           N         L +N   +  
Sbjct: 34  NDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMN----LQRHGLGDNVTLMEG 89

Query: 192 DGRRGYPDAAPYDVIYISQAIRDIPW---HIVDQLKLGGRMLFIKGHEDDIMTLELLDKF 248
           D           D+  +  +  ++      I D+LK GGR++      +         + 
Sbjct: 90  DAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRD 149

Query: 249 VNGSVKTTVIHPHVYIHELKSLEDQKRM 276
           +   V  T     + I   ++L+    M
Sbjct: 150 LGFDVNIT----ELNIARGRALDRGTMM 173

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 37.1 bits (85), Expect = 9e-04
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 56  LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114
           L++ L        D  +++G G+G +T     + G   +VY I+  PE +      ++ 
Sbjct: 24  LIMCLAE--PGKNDVAVDVGCGTGGVTL---ELAGRVRRVYAIDRNPEAISTTEMNLQR 77

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 215

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 64.1 bits (155), Expect = 8e-13
 Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 6/139 (4%)

Query: 120 IKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAP 178
           +  +    +L  G  +L++G+GSG+ +AL + +    VY IE +  L + A +N+ R   
Sbjct: 67  VAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV 126

Query: 179 AIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDD 238
                +N   +  DG +G+P  APYDVI ++     IP  +++QLK+GG+++   G    
Sbjct: 127 -----KNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHL 181

Query: 239 IMTLELLDKFVNGSVKTTV 257
              L  + K  +G      
Sbjct: 182 WQELLEVRKTKDGIKIKNH 200

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} Length = 224

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 60.2 bits (145), Expect = 2e-11
 Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 8/130 (6%)

Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFE 187
            L  G KVL+IG+G GY +AL A +  KV ++E  + +   A K +           N +
Sbjct: 67  DLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYY-------NNIK 119

Query: 188 FVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDK 247
            +  DG  GY +  PYD + +      +     +QLK GG M+   G    +  L  + K
Sbjct: 120 LILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIG-VGRVQKLYKVIK 178

Query: 248 FVNGSVKTTV 257
             N      +
Sbjct: 179 KGNSPSLENL 188

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 60.4 bits (146), Expect = 3e-11
 Identities = 30/134 (22%), Positives = 49/134 (36%), Gaps = 7/134 (5%)

Query: 34  TLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISG 93
            L+D   ++     +  P D   ++      +  G +VLE G GSG LT      VG +G
Sbjct: 65  LLVDYVMSMPRGPQVIYPKDAAQIVHEG--DIFPGARVLEAGAGSGALTLSLLRAVGPAG 122

Query: 94  KVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMG 153
           +V + E   +  E AR+ V                 +  S++ D     G +      M 
Sbjct: 123 QVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPD-----GSVDRAVLDML 177

Query: 154 AKVYAIEHVKNLCK 167
           A    ++ V  L  
Sbjct: 178 APWEVLDAVSRLLV 191

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 60.0 bits (145), Expect = 4e-11
 Identities = 35/200 (17%), Positives = 66/200 (33%), Gaps = 32/200 (16%)

Query: 62  SGHLKYGDKV-LEIGTGSGYLTTL----------------------FGAMVGISGKVYTI 98
           +G    G++V L    G  Y  +L                       G++V  S     +
Sbjct: 1   TGPFSIGERVQLTDAKGRRYTMSLTPGAEFHTHRGSIAHDAVIGLEQGSVVKSSNGALFL 60

Query: 99  EHIPELLEAARKRVKAKAETYIKRINF---YGHLVYGSKVLDIGSGSGYLSALFAYM--- 152
              P L++      +     Y K        G +  G++VL+ G+GSG L+         
Sbjct: 61  VLRPLLVDYVMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGP 120

Query: 153 GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI-SQA 211
             +V + E   +  + A +N+          +N+  V +D           D   +   A
Sbjct: 121 AGQVISYEQRADHAEHARRNVSGCYG--QPPDNWRLVVSDLADSELPDGSVDRAVLDMLA 178

Query: 212 IRDIPWHIVDQLKLGGRMLF 231
             ++   +   L  GG ++ 
Sbjct: 179 PWEVLDAVSRLLVAGGVLMV 198

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 54.7 bits (131), Expect = 2e-09
 Identities = 20/134 (14%), Positives = 47/134 (35%), Gaps = 10/134 (7%)

Query: 34  TLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISG 93
           + +     I  N  + S  D   ++      L+ G  +LE+G GSG +++     +   G
Sbjct: 54  SPMYFGRVIRRNTQIISEIDASYIIMRC--GLRPGMDILEVGVGSGNMSSYILYALNGKG 111

Query: 94  KVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMG 153
            +  +E   + L+ A           +      G++      +          A+ A + 
Sbjct: 112 TLTVVERDEDNLKKAMD--------NLSEFYDIGNVRTSRSDIADFISDQMYDAVIADIP 163

Query: 154 AKVYAIEHVKNLCK 167
                ++ + ++ K
Sbjct: 164 DPWNHVQKIASMMK 177

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

 Score = 50.5 bits (120), Expect = 5e-08
 Identities = 39/201 (19%), Positives = 63/201 (31%), Gaps = 33/201 (16%)

Query: 61  LSGHLKYGDKV-LEIGTGSGYLTTL----------------------FGAMVGISGKVYT 97
           ++  LK GD+V L     S +L  L                       G ++  S     
Sbjct: 7   VADTLKPGDRVLLSFEDESEFLVDLEKDKKLHTHLGIIDLNEVFEKGPGEIIRTSAGKKG 66

Query: 98  IEHIPELLEAARKRVKAKAETYIKRINF---YGHLVYGSKVLDIGSGSGYLSAL---FAY 151
              IP L++      +     Y K  +F      +  G +++D G GSG + A+      
Sbjct: 67  YILIPSLIDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVG 126

Query: 152 MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQA 211
              KV+A E  +   K A            L E       D   G+ +     +      
Sbjct: 127 SSGKVFAYEKREEFAKLA----ESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVPD 182

Query: 212 IRDIPWHIVDQLKLGGRMLFI 232
             +      + LK GGR   +
Sbjct: 183 PWNYIDKCWEALKGGGRFATV 203

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

 Score = 50.5 bits (120), Expect = 6e-08
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 34  TLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISG 93
           +L+D   N+     +  P D   +  +L   +K GD++++ G GSG +  +    VG SG
Sbjct: 72  SLIDEIMNMKRRTQIVYPKDSSFIAMML--DVKEGDRIIDTGVGSGAMCAVLARAVGSSG 129

Query: 94  KVYTIEHIPELLEAARKRVKA 114
           KV+  E   E  + A   +  
Sbjct: 130 KVFAYEKREEFAKLAESNLTK 150

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 213

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

 Score = 49.2 bits (116), Expect = 1e-07
 Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 8/134 (5%)

Query: 134 KVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVC 190
           +VL+IG G+GY +A+ + +      V ++E+ + +C+ A +N+ R        EN  FVC
Sbjct: 78  RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-----ENVIFVC 132

Query: 191 ADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVN 250
            DG  G P+ +PYDVI+++  + ++P     QLK GGR++     +        L K  +
Sbjct: 133 GDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKKD 192

Query: 251 GSVKTTVIHPHVYI 264
             +         +I
Sbjct: 193 PYLVGNYKLETRFI 206

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 48.5 bits (114), Expect = 3e-07
 Identities = 19/142 (13%), Positives = 42/142 (29%), Gaps = 5/142 (3%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKN-LCKRAMKNIRRGAPAIALAENFEFVC 190
             +VLD+ +G G+++  FA    KV A +  ++ L          G   +   +      
Sbjct: 16  NEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM 75

Query: 191 ADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVN 250
                 +         +               LK GG++L +     +    ++   +  
Sbjct: 76  PFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNY-- 133

Query: 251 GSVKTTVIHPHVYIHELKSLED 272
             V+    + H    +      
Sbjct: 134 --VEKERDYSHHRAWKKSDWLK 153

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 48.0 bits (113), Expect = 3e-07
 Identities = 25/142 (17%), Positives = 48/142 (33%), Gaps = 5/142 (3%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
             +VLDIG+G+G+ +  F+    +   ++  K + + A    +         +       
Sbjct: 17  EHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL 76

Query: 192 DGRRGYPDAA-PYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVN 250
                  D        +    +R     +   LK  GR L +  +  +     +LD+FVN
Sbjct: 77  PFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPE---DPVLDEFVN 133

Query: 251 GSVKTTVIHPHVYIHELKSLED 272
             +       HV    L   + 
Sbjct: 134 -HLNRLRDPSHVRESSLSEWQA 154

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 1e-06
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 6/81 (7%)

Query: 113 KAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMK 171
           K + E+Y   I    H+     VLD+G G+G LS   A  GA KV  ++  + L +    
Sbjct: 17  KIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDI 76

Query: 172 NIRRGAPAIALAENFEFVCAD 192
                     L +    +   
Sbjct: 77  IRLNK-----LEDTITLIKGK 92

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.004
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 64  HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRI 123
           H+     VL++G G+G L ++F A  G + KV  ++    L +A       K E  I  I
Sbjct: 32  HIFKDKVVLDVGCGTGIL-SMFAAKAG-AKKVLGVDQSEILYQAMDIIRLNKLEDTITLI 89

Query: 124 N 124
            
Sbjct: 90  K 90

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 45.5 bits (106), Expect = 2e-06
 Identities = 14/120 (11%), Positives = 26/120 (21%), Gaps = 16/120 (13%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
           G++VL    G     +  +  G  V   E  +   +R            +  +   +   
Sbjct: 21  GARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAP 80

Query: 192 DGRR--------GYPDAAPYDVIYISQAI--------RDIPWHIVDQLKLGGRMLFIKGH 235
                          D       Y   A+             H+   +      L I   
Sbjct: 81  GIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLE 140

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 2/150 (1%)

Query: 101 IPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFA-YMGAKVYAI 159
           I  + E+  +      E     +     +  G+++LD+GSGSG +   +A   G     I
Sbjct: 3   IFTISESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGI 62

Query: 160 EHVKNLCKRAMKN-IRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWH 218
           +       +A +     G        + +            AA     +I+         
Sbjct: 63  DMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAEEL 122

Query: 219 IVDQLKLGGRMLFIKGHEDDIMTLELLDKF 248
           +   LK GG ML  + +   +   E + + 
Sbjct: 123 LAQSLKPGGIMLIGEPYWRQLPATEEIAQA 152

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

 Score = 45.0 bits (106), Expect = 3e-06
 Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 15/151 (9%)

Query: 131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAE----NF 186
           Y   V+D  +G G  + + A +G +V  +E    +       + RG     +        
Sbjct: 88  YLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERL 147

Query: 187 EFVCADGRRGYPDAAP-YDVIYISQAIRDIPWHIVDQLKLGGRMLFI--KGHEDDIMTLE 243
           + + A       D  P   V+Y+     D  +    +  L  + + +       D+    
Sbjct: 148 QLIHASSLTALTDITPRPQVVYL-----DPMFPHKQKSALVKKEMRVFQSLVGPDLDADG 202

Query: 244 LLDKFVNGSVKTTVIHPHVYIHELKSLEDQK 274
           LL+     + K  V+    Y      L +  
Sbjct: 203 LLEPARLLATKRVVVKRPDY---APPLANVA 230

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 44.7 bits (105), Expect = 4e-06
 Identities = 25/172 (14%), Positives = 50/172 (29%), Gaps = 22/172 (12%)

Query: 64  HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRI 123
            +K   K+L +G  +G   +   A +   G VY IE+ P ++         +        
Sbjct: 71  PIKRDSKILYLGASAGTTPSHV-ADIADKGIVYAIEYAPRIMRELLDACAERENIIPILG 129

Query: 124 NFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALA 183
           +      Y + V  +                 +Y      N  +  +KN +         
Sbjct: 130 DANKPQEYANIVEKVD---------------VIYEDVAQPNQAEILIKNAKWFLKKGGYG 174

Query: 184 ENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGH 235
                  +      P     +     + +    + IVD++ +     F K H
Sbjct: 175 MIAIKARSIDVTKDPKEIFKEQK---EILEAGGFKIVDEVDIEP---FEKDH 220

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.9 bits (105), Expect = 5e-06
 Identities = 25/162 (15%), Positives = 52/162 (32%), Gaps = 18/162 (11%)

Query: 96  YTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAK 155
           Y       + +      +++   Y   +          +VLD+  G+G  S +    G  
Sbjct: 21  YADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFS 80

Query: 156 VYAIEHVKNLCKRAMKNIRRGAPAIAL----AENFEFVCADGRRGYPDAAPYDVIYISQA 211
           V +++    + K A+K         A      E   ++  D +          VI +  +
Sbjct: 81  VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD-KDVPAGDGFDAVICLGNS 139

Query: 212 IRDIPWHIVDQ-------------LKLGGRMLFIKGHEDDIM 240
              +P    DQ             ++ GG ++    + D I+
Sbjct: 140 FAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYIL 181

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 1e-05
 Identities = 20/81 (24%), Positives = 26/81 (32%), Gaps = 6/81 (7%)

Query: 113 KAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMK 171
           + +  TY   +    HL     VLD+GSG+G L    A  GA KV  IE           
Sbjct: 15  EVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKI 74

Query: 172 NIRRGAPAIALAENFEFVCAD 192
                     L      +   
Sbjct: 75  VKANK-----LDHVVTIIKGK 90

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 41.4 bits (96), Expect = 4e-05
 Identities = 18/145 (12%), Positives = 42/145 (28%), Gaps = 7/145 (4%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
              +L++GS  G  ++        +  +E  +     A   ++ G   I        +  
Sbjct: 21  PGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPR 80

Query: 192 DGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLEL----LDK 247
                        +      ++ I       L  GGR+  +  + + +         +  
Sbjct: 81  RYDNIVLTHVLEHIDDPVALLKRINDDW---LAEGGRLFLVCPNANAVSRQIAVKMGIIS 137

Query: 248 FVNGSVKTTVIHPHVYIHELKSLED 272
             +   +    H H   + L +LE 
Sbjct: 138 HNSAVTEAEFAHGHRCTYALDTLER 162

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 40.8 bits (95), Expect = 6e-05
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 64  HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113
            L+  ++VL +G  SG  T    A +   G +Y +E+  +  E   + V+
Sbjct: 53  KLRGDERVLYLGAASGT-TVSHLADIVDEGIIYAVEYSAKPFEKLLELVR 101

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 9/106 (8%)

Query: 132 GSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
             +VL +G+ SG   +  A +     +YA+E+     ++ ++ +R          N   +
Sbjct: 57  DERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-------NNIIPL 109

Query: 190 CADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGH 235
             D  + +  +   + + +          I          L  KG 
Sbjct: 110 LFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGE 155

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 16/133 (12%)

Query: 123 INFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPA 179
           +N    +     ++D G G GYL  +   +   G+K   I+  + L   A +  R     
Sbjct: 19  VNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL--- 75

Query: 180 IALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPW------HIVDQLKLGGRMLFIK 233
                                  YD+      +  +         ++  +K GG+++  +
Sbjct: 76  ----PYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFE 131

Query: 234 GHEDDIMTLELLD 246
            H    M   LLD
Sbjct: 132 PHWISNMASYLLD 144

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 113 KAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMK 171
             +  +Y   I     L     VLD+G G+G LS   A  GAK V  ++    +      
Sbjct: 20  TVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKEL 79

Query: 172 NIRRG 176
               G
Sbjct: 80  VELNG 84

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 16/51 (31%), Positives = 24/51 (47%)

Query: 64  HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114
            +K G  VL +G  SG   +    +VG  GK++ IE  P +L      V+ 
Sbjct: 70  PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE 120

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.9 bits (90), Expect = 5e-04
 Identities = 20/132 (15%), Positives = 41/132 (31%), Gaps = 13/132 (9%)

Query: 57  VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 116
           V +     LK GD  +++G+G G          G     +  E + +  +    +     
Sbjct: 208 VYQQC--QLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQ----Y 260

Query: 117 ETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEH------VKNLCKRAM 170
           E   KR   YG  +   +     S               V  + +      +    ++ +
Sbjct: 261 EELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKIL 320

Query: 171 KNIRRGAPAIAL 182
           +  + G   I+L
Sbjct: 321 QTAKVGCKIISL 332

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} Length = 309

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 38.6 bits (89), Expect = 5e-04
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 12/103 (11%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
             KVL++   +G  S + A  GA+V  ++  K     A +N        A      ++C 
Sbjct: 133 PLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQA---PIRWICE 189

Query: 192 DGRRGYPDAA----PYDVIYI-----SQAIRDIPWHIVDQLKL 225
           D  +           YD+I        +      W + D L L
Sbjct: 190 DAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPL 232

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 8e-04
 Identities = 18/115 (15%), Positives = 29/115 (25%), Gaps = 13/115 (11%)

Query: 132 GSKVLDIGSGSGYLSALFA--YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALA----EN 185
               +D+GSG G +    A        Y +E      K A    R     +         
Sbjct: 152 DDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAE 211

Query: 186 FEFVCADGRRGYPDAAPYDVIYIS-------QAIRDIPWHIVDQLKLGGRMLFIK 233
           +     D           +   I          +          +K GGR++  K
Sbjct: 212 YTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSK 266

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 19/187 (10%), Positives = 48/187 (25%), Gaps = 21/187 (11%)

Query: 117 ETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFA--------YMGAKVYAIEHVKNLCKR 168
           +     I   G      K+L IG G+G +              +      +E       +
Sbjct: 26  KKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAK 85

Query: 169 AMKNIRRGA-----PAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIP------W 217
             + + + +           E      +           +D I++ Q +  +        
Sbjct: 86  YKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL-QKWDFIHMIQMLYYVKDIPATLK 144

Query: 218 HIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMF 277
                L    + + I          +L  K+ +   +  +          + L++    +
Sbjct: 145 FFHSLLGTNAK-MLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKY 203

Query: 278 HYYNTPP 284
             Y+   
Sbjct: 204 ECYDLLS 210

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 24/175 (13%), Positives = 41/175 (23%), Gaps = 18/175 (10%)

Query: 119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGA 177
           +IK      +   G  VLD+G G G     +   G  + Y ++  +     A       A
Sbjct: 12  FIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVR----A 67

Query: 178 PAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHED 237
             +       F   D    + D        +  +     +       L      I  H  
Sbjct: 68  RNMKRRFKVFFRAQDSYGRHMD--LGKEFDVISSQFSFHYAFSTSESLDIAQRNIARH-- 123

Query: 238 DIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYNTPPPQMDLFDG 292
                        G    TV    V +   K        +         + +   
Sbjct: 124 ---------LRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESV 169

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 25/156 (16%), Positives = 48/156 (30%), Gaps = 9/156 (5%)

Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFE 187
           + +     LD+  G+G L+          +A++  + +   A    R       LA    
Sbjct: 34  NNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDI 93

Query: 188 FVCADGRRGYPDAAPYDVIYISQAIRDIP---WHIVDQLKLGGRMLFIKGHEDDIMTLEL 244
                 R+        D         D+      + + LK GG  +F      DI +   
Sbjct: 94  SNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF------DINSYYK 147

Query: 245 LDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYY 280
           L + +  +          Y  E +  +D   M+  +
Sbjct: 148 LSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISF 183

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Length = 254

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

 Score = 36.4 bits (83), Expect = 0.003
 Identities = 24/104 (23%), Positives = 34/104 (32%), Gaps = 4/104 (3%)

Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFE 187
           HL  G KVLD+G+GSG L+     +G K   ++    +  +A  N +R        E   
Sbjct: 117 HLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSL 176

Query: 188 FVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLF 231
                        A       +             L  GGR L 
Sbjct: 177 EAALPFGPFDLLVANLYAELHAALAPRYREA----LVPGGRALL 216

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.004
 Identities = 16/116 (13%), Positives = 39/116 (33%), Gaps = 3/116 (2%)

Query: 132 GSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVC 190
           G  ++DIGSG      L A    + +   + ++   +   + ++    A   +   +  C
Sbjct: 55  GRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHAC 114

Query: 191 ADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLD 246
               +G           +   ++ +    V Q +  G         D +++   L+
Sbjct: 115 LIEGKGECWQDKER--QLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLE 168

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 35.3 bits (80), Expect = 0.004
 Identities = 18/119 (15%), Positives = 32/119 (26%), Gaps = 14/119 (11%)

Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFE 187
            +V   + LD+G G+G  S   A  G  V A +          +             +  
Sbjct: 27  KVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGL------DNL 80

Query: 188 FVCADGRRGYPDAAPYDVIYISQAIRDIPW--------HIVDQLKLGGRMLFIKGHEDD 238
                          YD I  +  +  +          ++    K GG  L +   +  
Sbjct: 81  QTDLVDLNTLTFDGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTP 139

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	299
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.97
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.96
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.96
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.95
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.94
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.82
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.8
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.76
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.76
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.75
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.75
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.73
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.7
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.7
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.69
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.65
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.64
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.62
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.61
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.61
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.6
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.59
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.58
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.57
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.57
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.56
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.56
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.55
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.55
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.54
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.54
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.52
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.52
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.5
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.49
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.47
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.47
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.44
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.43
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.42
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.41
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.39
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.39
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.39
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.39
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.38
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.35
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.35
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.34
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.34
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.34
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.3
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.29
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.29
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.26
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.24
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.24
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.23
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.23
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.22
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.21
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.2
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.19
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.16
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.12
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.12
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.11
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.1
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.02
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.98
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.87
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.86
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.81
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.75
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	98.74
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	98.72
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.7
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	98.68
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.67
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.66
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.65
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	98.61
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.61
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.6
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.6
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.59
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.59
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	98.58
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.57
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.56
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.55
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.54
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.53
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.53
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.51
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.51
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.5
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.5
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.49
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.45
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.45
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.44
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.42
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	98.41
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	98.38
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.38
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.38
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.36
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.36
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.33
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	98.31
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.3
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	98.3
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	98.29
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.28
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.25
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.24
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.24
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.23
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.23
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.22
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.22
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.21
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.2
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.15
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.15
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.15
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.14
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.14
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.13
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.08
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.07
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.07
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.06
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.05
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.04
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.02
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.01
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	97.99
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	97.96
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	97.95
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	97.94
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.9
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.88
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	97.84
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.83
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	97.82
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	97.81
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	97.73
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.73
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.71
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	97.69
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.68
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.65
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	97.62
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.61
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	97.61
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	97.6
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	97.6
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	97.55
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.54
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	97.52
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	97.5
d2h00a1	250	Methyltransferase 10 domain containing protein MET	97.49
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	97.43
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	97.42
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	97.42
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	97.42
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	97.4
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.39
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.35
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	97.34
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	97.33
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.31
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.29
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.27
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.25
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.22
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	97.09
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.08
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.06
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	97.05
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.04
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	97.02
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	96.97
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	96.97
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	96.96
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	96.92
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.9
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.89
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	96.89
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.86
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.84
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.65
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.63
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.61
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.59
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	96.56
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.5
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	96.5
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.47
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.36
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.28
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.2
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.17
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.14
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	96.09
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	96.05
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.92
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	95.73
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	95.62
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.48
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	95.47
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	95.07
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	94.79
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	94.69
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	94.51
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	94.4
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	94.33
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.33
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	94.1
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	93.94
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	93.82
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	93.7
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	93.62
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	93.53
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	93.45
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.3
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	93.22
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	92.93
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	92.83
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	92.77
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	92.71
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	92.5
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	92.47
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	92.44
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	92.36
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	92.16
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.15
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	92.15
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	92.11
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	91.97
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	91.96
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	91.9
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	91.87
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	91.69
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	91.66
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	91.63
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	91.55
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	91.55
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	91.35
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.22
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	91.03
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	91.01
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	90.85
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	90.83
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	90.35
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	90.24
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	90.1
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	90.02
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	90.0
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	89.89
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	89.44
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	89.43
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	89.4
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.38
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	89.35
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	89.34
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	89.31
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	89.28
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	89.23
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	89.12
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	89.09
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	89.01
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	88.98
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	88.65
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	88.64
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	88.63
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	88.62
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	88.52
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	88.52
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	88.52
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	88.47
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	88.11
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	88.01
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	87.89
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	87.67
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	87.66
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	87.55
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	87.44
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	87.34
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	87.32
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	87.3
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	86.79
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	86.67
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	86.66
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	86.51
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	86.32
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	86.01
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	85.86
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	85.69
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	85.68
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	85.06
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	85.02
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	84.58
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	84.35
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	83.76
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	83.55
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	83.09
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	82.64
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	81.69
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	80.96
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	80.85
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	80.56
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	80.43
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	80.26

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.9e-32  Score=224.50  Aligned_cols=201  Identities=33%  Similarity=0.552  Sum_probs=179.2

Q ss_pred             eeeeccCCCcCcCccccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHH
Q psy7837           9 LTLLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAM   88 (299)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~   88 (299)
                      -..++++..|+|+.|++  +    .+|.|.+++++.++++++|++++.+++.|...++||++|||+|||+||.|..+++.
T Consensus        24 ~~v~~a~~~vpRe~Fvp--~----~aY~D~~l~i~~~~~is~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l   97 (224)
T d1i1na_          24 DKVFEVMLATDRSHYAK--C----NPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARM   97 (224)
T ss_dssp             HHHHHHHHTSCGGGTCS--S----CTTSSSCEEEETTEEECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHcCC--c----ccCCCCCccccchhhhhhhHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHH
Confidence            34567888999999994  2    37999999999999999999999999999877999999999999999999999999


Q ss_pred             hCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHH
Q psy7837          89 VGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKR  168 (299)
Q Consensus        89 ~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~  168 (299)
                      +++.|+|+++|+++.+++.+++++.+.                                                     
T Consensus        98 ~~~~g~V~~ie~~~~l~~~a~~~l~~~-----------------------------------------------------  124 (224)
T d1i1na_          98 VGCTGKVIGIDHIKELVDDSVNNVRKD-----------------------------------------------------  124 (224)
T ss_dssp             HCTTCEEEEEESCHHHHHHHHHHHHHH-----------------------------------------------------
T ss_pred             hCCCceEEEEcCCHHHHHHHHHhcccc-----------------------------------------------------
Confidence            999999999999999999999998762                                                     


Q ss_pred             HHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCCCcceeeeEEee
Q psy7837         169 AMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKF  248 (299)
Q Consensus       169 a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~  248 (299)
                         .+..     ....++.++.+|+...+++.++||+|+++..++++++.+.++|||||+|++++.+....+.+..+++.
T Consensus       125 ---~~~~-----~~~~~~~~~~gD~~~~~~~~~~fD~I~~~~~~~~ip~~l~~~LkpGG~LV~pv~~~~~~q~l~~~~k~  196 (224)
T d1i1na_         125 ---DPTL-----LSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL  196 (224)
T ss_dssp             ---CTHH-----HHTSSEEEEESCGGGCCGGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEESCTTSCEEEEEEEEC
T ss_pred             ---Cccc-----ccccceEEEEeecccccchhhhhhhhhhhcchhhcCHHHHhhcCCCcEEEEEEccCCCcEEEEEEEEe
Confidence               0000     23468999999999877777899999999999999999999999999999999887777888889998


Q ss_pred             cCCceEEEEecceeccccccccccccccc
Q psy7837         249 VNGSVKTTVIHPHVYIHELKSLEDQKRMF  277 (299)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (299)
                      .++.+..+.++++.|+ |+.+.+.++..|
T Consensus       197 ~~~~~~~~~l~~v~fv-Pl~~~~~~~~~~  224 (224)
T d1i1na_         197 QDGSIKMKPLMGVIYV-PLTDKEKQWSRW  224 (224)
T ss_dssp             TTSCEEEEEEEEECCC-BCCCHHHHCCCC
T ss_pred             CCCeEEEEEEeeEEEE-CCCCchhhccCC
Confidence            8888999999999999 999998888877

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.96  E-value=4.3e-30  Score=211.96  Aligned_cols=190  Identities=28%  Similarity=0.440  Sum_probs=172.2

Q ss_pred             ceeeeeccCCCcCcCccccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHH
Q psy7837           7 PVLTLLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFG   86 (299)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la   86 (299)
                      .....+++...|+|+.|+  |..+...+|.|.+++++.+++++.|++++.+++.|.  +++|++|||||||+||.|+.++
T Consensus        22 ~~~~v~~A~~~VpRe~Fv--p~~~~~~AY~D~~l~i~~g~~is~P~~~a~ml~~L~--l~~g~~VLeIGsGsGY~taila   97 (215)
T d1jg1a_          22 RSKEVERAFLKYPRYLSV--EDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIAN--LKPGMNILEVGTGSGWNAALIS   97 (215)
T ss_dssp             CSHHHHHHHHHSCGGGGS--CGGGGGGTTSSSCEECSTTCEECCHHHHHHHHHHHT--CCTTCCEEEECCTTSHHHHHHH
T ss_pred             CCHHHHHHHHcCCchhcC--CHHHhhcccccCCcccchhhhhhhhhhHHHHHHhhc--cCccceEEEecCCCChhHHHHH
Confidence            445567788999999999  677999999999999999999999999999999998  9999999999999999999999


Q ss_pred             HHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHH
Q psy7837          87 AMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLC  166 (299)
Q Consensus        87 ~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~  166 (299)
                      +.++  ++|+++|.++.+++.+++++.+                                                    
T Consensus        98 ~l~g--~~V~~ie~~~~l~~~a~~~l~~----------------------------------------------------  123 (215)
T d1jg1a_          98 EIVK--TDVYTIERIPELVEFAKRNLER----------------------------------------------------  123 (215)
T ss_dssp             HHHC--SCEEEEESCHHHHHHHHHHHHH----------------------------------------------------
T ss_pred             HhhC--ceeEEEeccHHHHHHHHHHHHH----------------------------------------------------
Confidence            9886  5799999999999999999988                                                    


Q ss_pred             HHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCCCcceeeeEE
Q psy7837         167 KRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLD  246 (299)
Q Consensus       167 ~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~  246 (299)
                                    .+..|+.++++|....++..++||+|++.+....+++.+.++|++||+|+++.......+.+..+.
T Consensus       124 --------------~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~~~ip~~l~~qL~~gGrLv~pv~~~~~~q~l~~~~  189 (215)
T d1jg1a_         124 --------------AGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHLWQELLEVR  189 (215)
T ss_dssp             --------------TTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEECSSSSCEEEEEEE
T ss_pred             --------------cCCceeEEEECccccCCcccCcceeEEeecccccCCHHHHHhcCCCCEEEEEEccCCccEEEEEEE
Confidence                          467899999999998888889999999999999999999999999999999998877667787887


Q ss_pred             eecCCceEEEEecceecccccccc
Q psy7837         247 KFVNGSVKTTVIHPHVYIHELKSL  270 (299)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~  270 (299)
                      +..+ .+..+.++.+.|+ |+.+.
T Consensus       190 k~~~-~~~~~~l~~v~fv-Pl~g~  211 (215)
T d1jg1a_         190 KTKD-GIKIKNHGGVAFV-PLIGE  211 (215)
T ss_dssp             EETT-EEEEEEEEEECCC-BCBST
T ss_pred             EECC-EEEEEEEccEEEE-cCCCc
Confidence            7555 5999999999999 99854

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=1.4e-29  Score=210.47  Aligned_cols=191  Identities=30%  Similarity=0.535  Sum_probs=168.1

Q ss_pred             eeeeccCCCcCcCccccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHH
Q psy7837           9 LTLLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAM   88 (299)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~   88 (299)
                      ...++++..|+|+.|+  |+    .+|.|.+++++.+++++.|++++.+++.|...+++|++|||||||+||.|+.+++.
T Consensus        28 ~~v~~a~~~vpRe~Fv--p~----~aY~D~~lpi~~~~~is~P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l  101 (223)
T d1r18a_          28 DAVAQAMKETDRKHYS--PR----NPYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRY  101 (223)
T ss_dssp             HHHHHHHHTSCGGGTC--SS----CTTBSSCEEEETTEEECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHcC--Cc----cccCCCCccccCCceeehhhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHH
Confidence            3466788899999999  43    28999999999999999999999999999767999999999999999999999999


Q ss_pred             hCCCc-----eEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCCh
Q psy7837          89 VGISG-----KVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVK  163 (299)
Q Consensus        89 ~~~~g-----~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~  163 (299)
                      +++.|     +|+++|+++.+++.+++++...                                                
T Consensus       102 ~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~------------------------------------------------  133 (223)
T d1r18a_         102 IKAKGVDADTRIVGIEHQAELVRRSKANLNTD------------------------------------------------  133 (223)
T ss_dssp             HHHSCCCTTCEEEEEESCHHHHHHHHHHHHHH------------------------------------------------
T ss_pred             hhhccCCcccEEEEEecCHHHHHHHHHhhhhc------------------------------------------------
Confidence            87655     8999999999999999887652                                                


Q ss_pred             HHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCCCcceee
Q psy7837         164 NLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLE  243 (299)
Q Consensus       164 ~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~  243 (299)
                              ....     ....|+.++.+|....+++.++||+|++.+.+..+++.+.++|++||+|+++.......+.+.
T Consensus       134 --------~~~~-----~~~~nv~~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p~~l~~~Lk~gG~lV~pvg~~~~~q~l~  200 (223)
T d1r18a_         134 --------DRSM-----LDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVGPDGGSQYMQ  200 (223)
T ss_dssp             --------HHHH-----HHHTSEEEEESCGGGCCGGGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEEESCSSSCEEEE
T ss_pred             --------chhh-----cCccEEEEEecccccccccccceeeEEEEeechhchHHHHHhcCCCcEEEEEEecCCCcEEEE
Confidence                    0000     134689999999998887778999999999999999999999999999999998776678899


Q ss_pred             eEEeecCCceEEEEecceeccccc
Q psy7837         244 LLDKFVNGSVKTTVIHPHVYIHEL  267 (299)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~  267 (299)
                      .+.|..++.+..+.++.+.|+ ||
T Consensus       201 ~i~k~~~g~~~~~~l~~v~Fv-PL  223 (223)
T d1r18a_         201 QYDKDANGKVEMTRLMGVMYV-PL  223 (223)
T ss_dssp             EEEECTTSCEEEEEEEEECCC-CC
T ss_pred             EEEEeCCCcEEEEEEeeEEee-cC
Confidence            999988889999999999999 75

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=1.4e-27  Score=197.62  Aligned_cols=189  Identities=28%  Similarity=0.396  Sum_probs=159.2

Q ss_pred             eeccCCCcCcCccccCCCCCC-ccccccccccc----ccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHH
Q psy7837          11 LLDIPHNIGHNAFMESPSDYP-VLTLLDIPHNI----GHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLF   85 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~-~~~y~~~~~~~----~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~l   85 (299)
                      .+++...|+|+.|+  |+.+. ..+|.|.++..    ...+++++|++++.+++.+.  +++|++|||+|||+|+++..+
T Consensus        18 v~~a~~~v~Re~Fv--~~~~~~~~~~~d~~~~~~~~~~~~~~i~~P~~~a~~l~~l~--l~~g~~VLdiG~GtG~~s~~l   93 (213)
T d1dl5a1          18 IAKAFLEIPREEFL--TKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGMRVLEIGGGTGYNAAVM   93 (213)
T ss_dssp             HHHHHHHSCGGGGC--SSCCCHHHHTSSSCEEEEECSSCEEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHH
T ss_pred             HHHHHHcCCHHHcC--CchhhhhhhccCcccCcccCCccceeeccchhhHHHHHhhh--ccccceEEEecCccchhHHHH
Confidence            35677889999999  44443 46788877654    34578899999999999998  999999999999999999999


Q ss_pred             HHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHH
Q psy7837          86 GAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNL  165 (299)
Q Consensus        86 a~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~  165 (299)
                      ++.++++++|+++|+++.+++.+++++..                                                   
T Consensus        94 a~~~~~~g~V~~id~~~~~~~~a~~~~~~---------------------------------------------------  122 (213)
T d1dl5a1          94 SRVVGEKGLVVSVEYSRKICEIAKRNVER---------------------------------------------------  122 (213)
T ss_dssp             HHHHCTTCEEEEEESCHHHHHHHHHHHHH---------------------------------------------------
T ss_pred             HHHhCCCCcEEEeecchhhHHHhhhhHhh---------------------------------------------------
Confidence            99999999999999999999999999887                                                   


Q ss_pred             HHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCCCcceeeeE
Q psy7837         166 CKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELL  245 (299)
Q Consensus       166 ~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~  245 (299)
                                     ....|+.++++|....++..++||+|+++..++++++++.++|||||+|+++.............
T Consensus       123 ---------------~~~~n~~~~~~d~~~~~~~~~~fD~I~~~~~~~~~p~~l~~~LkpGG~lv~pv~~~~~~~~~~~~  187 (213)
T d1dl5a1         123 ---------------LGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFL  187 (213)
T ss_dssp             ---------------TTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSCCCHHHHHHEEEEEEEEEEBCBGGGTBCEEEE
T ss_pred             ---------------hcccccccccCchHHccccccchhhhhhhccHHHhHHHHHHhcCCCcEEEEEECccCCcEEEEEE
Confidence                           46789999999998877777889999999999999999999999999999988654443333344


Q ss_pred             EeecCCceEEEEecceecccccccc
Q psy7837         246 DKFVNGSVKTTVIHPHVYIHELKSL  270 (299)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~  270 (299)
                      .+..++.+....+.+++|+ |+.+.
T Consensus       188 ~~~~~~~~~~~~~~~~~Fv-pl~g~  211 (213)
T d1dl5a1         188 FKKKDPYLVGNYKLETRFI-TAGGN  211 (213)
T ss_dssp             EEEETTEEEEEEEEECCCC-BCCGG
T ss_pred             EEEeCCeEEEEEEeeEEEE-ECCCC
Confidence            4446777888899999999 88764

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.94  E-value=1.3e-27  Score=198.17  Aligned_cols=183  Identities=25%  Similarity=0.333  Sum_probs=158.7

Q ss_pred             eeeccCCCcCcCccccCCCCCCccccccc--ccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHH
Q psy7837          10 TLLDIPHNIGHNAFMESPSDYPVLTLLDI--PHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGA   87 (299)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~--~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~   87 (299)
                      ..++++..|+|+.|+  |+.+...+|.|.  ++++..+++++.|++.+.+++.|.  +++|++|||||||+||+|..+++
T Consensus        15 ~v~~A~~~VpRe~Fv--p~~~~~~AY~d~~~~l~i~~g~~~~~p~~~a~ml~~L~--l~~g~~VLdIG~GsGy~ta~La~   90 (224)
T d1vbfa_          15 ELAEAFNKVDRSLFL--PENLKDYAYAHTHEALPILPGINTTALNLGIFMLDELD--LHKGQKVLEIGTGIGYYTALIAE   90 (224)
T ss_dssp             HHHHHHHHSCHHHHS--CGGGGGGSSSSTTCCEEEETTEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHH
T ss_pred             HHHHHHHcCcHHHcC--ChhhhhcCccCcccCcccCCCCceehhhhHHHHHHHhh--hcccceEEEecCCCCHHHHHHHH
Confidence            456788899999999  667888888775  588889999999999999999997  99999999999999999999998


Q ss_pred             HhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHH
Q psy7837          88 MVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCK  167 (299)
Q Consensus        88 ~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~  167 (299)
                      ..   ++|+++|+++.+.+.+++++..                                                     
T Consensus        91 l~---~~V~aiE~~~~~~~~A~~~~~~-----------------------------------------------------  114 (224)
T d1vbfa_          91 IV---DKVVSVEINEKMYNYASKLLSY-----------------------------------------------------  114 (224)
T ss_dssp             HS---SEEEEEESCHHHHHHHHHHHTT-----------------------------------------------------
T ss_pred             Hh---cccccccccHHHHHHHHHHHhc-----------------------------------------------------
Confidence            76   4699999999998888876543                                                     


Q ss_pred             HHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCCCcceeeeEEe
Q psy7837         168 RAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDK  247 (299)
Q Consensus       168 ~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~  247 (299)
                                     ..|+.++.+|....+++.++||+|++.+..+++++.+.++|++||+|+++.... ..+.+..+.+
T Consensus       115 ---------------~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~~ip~~l~~qLk~GGrLV~pvg~~-~~q~l~~i~k  178 (224)
T d1vbfa_         115 ---------------YNNIKLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGVG-RVQKLYKVIK  178 (224)
T ss_dssp             ---------------CSSEEEEESCGGGCCGGGCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEEECSS-SSEEEEEEEC
T ss_pred             ---------------ccccccccCchhhcchhhhhHHHHHhhcchhhhhHHHHHhcCCCCEEEEEEcCC-CceEEEEEEE
Confidence                           369999999998877777889999999999999999999999999999998754 4577888888


Q ss_pred             ecCCceEEEEecceecccccccc
Q psy7837         248 FVNGSVKTTVIHPHVYIHELKSL  270 (299)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~  270 (299)
                      .. ..+..+.++++.|. |+.+.
T Consensus       179 ~~-~~~~~~~l~~v~F~-pl~g~  199 (224)
T d1vbfa_         179 KG-NSPSLENLGEVMFG-RIGGL  199 (224)
T ss_dssp             CT-TSCEEEEEEEECCC-BCCST
T ss_pred             EC-CceEEEEeeeEEEE-ECCCc
Confidence            54 46899999999999 98874

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.82  E-value=1.9e-20  Score=158.02  Aligned_cols=192  Identities=17%  Similarity=0.148  Sum_probs=139.3

Q ss_pred             cccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHH
Q psy7837          38 IPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAE  117 (299)
Q Consensus        38 ~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~  117 (299)
                      -...+.++.++.+|.....++..+.  ++||++|||+|||+|++|..|++.++++|+++++|+++++++.|++++.... 
T Consensus        69 ~~~~~~r~tqiiypkD~s~Ii~~l~--i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~-  145 (264)
T d1i9ga_          69 YVMSMPRGPQVIYPKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCY-  145 (264)
T ss_dssp             HHTTSCSCSCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHH-
T ss_pred             HHhhccCCccccchHHHHHHHHHhC--CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhc-
Confidence            3456778999999999999999998  9999999999999999999999999999999999999999999999987620 


Q ss_pred             HHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC
Q psy7837         118 TYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY  197 (299)
Q Consensus       118 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  197 (299)
                                                                               .     ....++.++++|+....
T Consensus       146 ---------------------------------------------------------~-----~~~~nv~~~~~d~~~~~  163 (264)
T d1i9ga_         146 ---------------------------------------------------------G-----QPPDNWRLVVSDLADSE  163 (264)
T ss_dssp             ---------------------------------------------------------T-----SCCTTEEEECSCGGGCC
T ss_pred             ---------------------------------------------------------c-----CCCceEEEEeccccccc
Confidence                                                                     0     24579999999998766


Q ss_pred             CCCCCeeEEEecchhhh-HHHHHHHhccCCcEEEEEecCCCCcceeeeEEee-cCCceEEEEecceeccccccccccccc
Q psy7837         198 PDAAPYDVIYISQAIRD-IPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKF-VNGSVKTTVIHPHVYIHELKSLEDQKR  275 (299)
Q Consensus       198 ~~~~~fD~v~~~~~~~~-~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (299)
                      .++++||.|+++.+-++ ..+++.++|||||++++..++-+..+  ..+... .++.|......++-.. +..-.....+
T Consensus       164 ~~~~~fDaV~ldlp~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~--~~~~~l~~~~~f~~i~~~E~l~R-~~~v~~~~~R  240 (264)
T d1i9ga_         164 LPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLS--RIVEALRAKQCWTEPRAWETLQR-GWNVVGLAVR  240 (264)
T ss_dssp             CCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESSHHHHH--HHHHHHHHHSSBCCCEEECCCCC-CEEEETTEEE
T ss_pred             ccCCCcceEEEecCCHHHHHHHHHhccCCCCEEEEEeCccChHH--HHHHHHHHcCCeecceEEEEEEE-EEEeccCeeC
Confidence            66689999999876544 66899999999999999887754221  111111 1223443333333222 1111222223


Q ss_pred             cceecCCCCCCccccccCCCcc
Q psy7837         276 MFHYYNTPPPQMDLFDGLTPRL  297 (299)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~  297 (299)
                      .-+.+.....++.+-+.++|+.
T Consensus       241 P~~~~vgHTgfl~~ark~~~~~  262 (264)
T d1i9ga_         241 PQHSMRGHTAFLVATRRLAPGA  262 (264)
T ss_dssp             ECSCCCCCSCEEEEEEBCCTTC
T ss_pred             CCCCCccchHHHhhhhhccCCC
Confidence            3334455566667777676653

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.80  E-value=3.5e-20  Score=155.48  Aligned_cols=132  Identities=18%  Similarity=0.144  Sum_probs=98.5

Q ss_pred             ccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhH
Q psy7837          37 DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA  116 (299)
Q Consensus        37 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~  116 (299)
                      +-...+.++.++..|.....++..+.  ++||++|||+|||+|++|..+++.+++.|+|+++|+++.+++.|++++.+. 
T Consensus        57 ~~~~~~~r~~qiiypkD~~~Ii~~l~--i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~-  133 (250)
T d1yb2a1          57 YFGRVIRRNTQIISEIDASYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF-  133 (250)
T ss_dssp             GHHHHC------------------CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTT-
T ss_pred             HHHhhCCCCCcccCHHHHHHHHHHcC--CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh-
Confidence            33445678899999999999998887  999999999999999999999999999999999999999999999998873 


Q ss_pred             HHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC
Q psy7837         117 ETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG  196 (299)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  196 (299)
                                                                                      ....++++..+|+...
T Consensus       134 ----------------------------------------------------------------~~~~nv~~~~~Di~~~  149 (250)
T d1yb2a1         134 ----------------------------------------------------------------YDIGNVRTSRSDIADF  149 (250)
T ss_dssp             ----------------------------------------------------------------SCCTTEEEECSCTTTC
T ss_pred             ----------------------------------------------------------------cCCCceEEEEeeeecc
Confidence                                                                            4568999999999876


Q ss_pred             CCCCCCeeEEEecchhh-hHHHHHHHhccCCcEEEEEecCC
Q psy7837         197 YPDAAPYDVIYISQAIR-DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       197 ~~~~~~fD~v~~~~~~~-~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      .+ +..||.|+++.+-. ...+++.++|||||++++..++.
T Consensus       150 ~~-~~~fD~V~ld~p~p~~~l~~~~~~LKpGG~lv~~~P~i  189 (250)
T d1yb2a1         150 IS-DQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLPNF  189 (250)
T ss_dssp             CC-SCCEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred             cc-cceeeeeeecCCchHHHHHHHHHhcCCCceEEEEeCCc
Confidence            54 47899999987654 36689999999999999988764

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.76  E-value=2.7e-18  Score=143.38  Aligned_cols=109  Identities=19%  Similarity=0.216  Sum_probs=96.1

Q ss_pred             HHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCC
Q psy7837         121 KRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDA  200 (299)
Q Consensus       121 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  200 (299)
                      ..+.....++++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++++.     ....++.++++|+.....+.
T Consensus         6 ~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~-----~~~~~~~~~~~d~~~~~~~~   80 (234)
T d1xxla_           6 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQE-----KGVENVRFQQGTAESLPFPD   80 (234)
T ss_dssp             HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHH-----HTCCSEEEEECBTTBCCSCT
T ss_pred             HHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhcc-----cccccccccccccccccccc
Confidence            3455667889999999999999999999999999999999999999999999887     46678999999999866667


Q ss_pred             CCeeEEEecchhhhH------HHHHHHhccCCcEEEEEec
Q psy7837         201 APYDVIYISQAIRDI------PWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       201 ~~fD~v~~~~~~~~~------~~~~~~~L~~gG~lv~~~~  234 (299)
                      ++||+|++..+++++      .+++.++|||||++++...
T Consensus        81 ~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~  120 (234)
T d1xxla_          81 DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH  120 (234)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEc
Confidence            899999999998764      4689999999999998643

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.76  E-value=2.8e-18  Score=142.69  Aligned_cols=107  Identities=21%  Similarity=0.265  Sum_probs=93.9

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCC
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAP  202 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  202 (299)
                      +...+.++++.+|||||||+|.++..+++.+.+|+++|+|+.+++.|++++..     ....+++++++|+.....+.++
T Consensus         7 ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~-----~~~~~i~~~~~d~~~l~~~~~~   81 (231)
T d1vl5a_           7 LMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEG-----NGHQQVEYVQGDAEQMPFTDER   81 (231)
T ss_dssp             HHHHHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHH-----TTCCSEEEEECCC-CCCSCTTC
T ss_pred             HHHhcCCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhcccc-----cccccccccccccccccccccc
Confidence            44557889999999999999999999999999999999999999999999887     4678999999999986666689


Q ss_pred             eeEEEecchhhhH------HHHHHHhccCCcEEEEEec
Q psy7837         203 YDVIYISQAIRDI------PWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       203 fD~v~~~~~~~~~------~~~~~~~L~~gG~lv~~~~  234 (299)
                      ||+|++..+++++      .+++.++|||||++++...
T Consensus        82 fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~  119 (231)
T d1vl5a_          82 FHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDN  119 (231)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence            9999999998765      3689999999999998653

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=1.7e-18  Score=146.71  Aligned_cols=133  Identities=23%  Similarity=0.374  Sum_probs=113.6

Q ss_pred             ccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhH
Q psy7837          37 DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA  116 (299)
Q Consensus        37 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~  116 (299)
                      |....+.++.++.+|...+.++..+.  ++||++|||+|||+|+++..+++.+++.|+++++|+++.+++.|++++... 
T Consensus        75 d~~~~~~r~~qiiypkd~~~Ii~~l~--i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~-  151 (266)
T d1o54a_          75 DEIMNMKRRTQIVYPKDSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW-  151 (266)
T ss_dssp             HHHHTCCC-CCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT-
T ss_pred             HHHhhccCCccccchHHHHHHHHhhC--CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh-
Confidence            44457778899999999999999998  999999999999999999999999999999999999999999999998873 


Q ss_pred             HHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC
Q psy7837         117 ETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG  196 (299)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  196 (299)
                                                                                      +...++.+...|....
T Consensus       152 ----------------------------------------------------------------g~~~~v~~~~~d~~~~  167 (266)
T d1o54a_         152 ----------------------------------------------------------------GLIERVTIKVRDISEG  167 (266)
T ss_dssp             ----------------------------------------------------------------TCGGGEEEECCCGGGC
T ss_pred             ----------------------------------------------------------------ccccCcEEEecccccc
Confidence                                                                            3456888888887654


Q ss_pred             CCCCCCeeEEEecchhh-hHHHHHHHhccCCcEEEEEecCCC
Q psy7837         197 YPDAAPYDVIYISQAIR-DIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       197 ~~~~~~fD~v~~~~~~~-~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      ... ..||.|+.+.+-. ...+++.++|||||++++.++..+
T Consensus       168 ~~~-~~~D~V~~d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~  208 (266)
T d1o54a_         168 FDE-KDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTN  208 (266)
T ss_dssp             CSC-CSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEESSHH
T ss_pred             ccc-cceeeeEecCCCHHHHHHHHHhhcCCCCEEEEEeCccc
Confidence            443 6799999887654 467899999999999999887643

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.8e-18  Score=150.24  Aligned_cols=146  Identities=21%  Similarity=0.266  Sum_probs=115.7

Q ss_pred             ccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          35 LLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        35 y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.+-...+.++.++.+|...+.++..|.  ++||++|||+|||+|++|..|++.++++|+|+++|+++.+++.|++++.+
T Consensus        68 ~~d~~~~~~r~tqiiypkD~~~Il~~l~--i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~  145 (324)
T d2b25a1          68 LEDYVVLMKRGTAITFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKH  145 (324)
T ss_dssp             HHHHHHHSCCSSCCCCHHHHHHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHH
T ss_pred             HHHHhhccCCCCcccccccHHHHHHHhC--CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHH
Confidence            3455567788999999999999999998  99999999999999999999999999999999999999999999999987


Q ss_pred             hHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCC
Q psy7837         115 KAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGR  194 (299)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  194 (299)
                      ...                                                    ...+...   .....|+.+.++|+.
T Consensus       146 ~~~----------------------------------------------------~~~~~~~---~~~~~nv~~~~~di~  170 (324)
T d2b25a1         146 WRD----------------------------------------------------SWKLSHV---EEWPDNVDFIHKDIS  170 (324)
T ss_dssp             HHH----------------------------------------------------HHTTTCS---SCCCCCEEEEESCTT
T ss_pred             hhh----------------------------------------------------hhhhhhh---hccccceeEEecchh
Confidence            310                                                    0000000   024579999999987


Q ss_pred             CCCC--CCCCeeEEEecchhhh-HHHHHHHhccCCcEEEEEecCCC
Q psy7837         195 RGYP--DAAPYDVIYISQAIRD-IPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       195 ~~~~--~~~~fD~v~~~~~~~~-~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      ....  ....||.|+++.+-++ ..+++.++|||||+|++..++-+
T Consensus       171 ~~~~~~~~~~fD~V~LD~p~P~~~l~~~~~~LKpGG~lv~~~P~i~  216 (324)
T d2b25a1         171 GATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNIT  216 (324)
T ss_dssp             CCC-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEESSHH
T ss_pred             hcccccCCCCcceEeecCcCHHHHHHHHHHhccCCCEEEEEeCCHH
Confidence            5432  3467999999876543 67899999999999999887654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.73  E-value=3.4e-18  Score=137.80  Aligned_cols=109  Identities=22%  Similarity=0.276  Sum_probs=93.1

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCC
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAP  202 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  202 (299)
                      +.....+.++.+|||+|||+|.+++.+++.+.+|+++|+++++++.+++|++.+    +...+++++++|+.+.......
T Consensus        25 il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~----gl~~~v~~~~gda~~~~~~~~~  100 (186)
T d1l3ia_          25 IMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRH----GLGDNVTLMEGDAPEALCKIPD  100 (186)
T ss_dssp             HHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHT----TCCTTEEEEESCHHHHHTTSCC
T ss_pred             HHHhcCCCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHc----CCCcceEEEECchhhcccccCC
Confidence            333457789999999999999999999999999999999999999999999884    3457999999998865555578


Q ss_pred             eeEEEecchhh---hHHHHHHHhccCCcEEEEEecC
Q psy7837         203 YDVIYISQAIR---DIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       203 fD~v~~~~~~~---~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ||.|+++....   .+.+.+.+.|||||++++....
T Consensus       101 ~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~  136 (186)
T d1l3ia_         101 IDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAIL  136 (186)
T ss_dssp             EEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred             cCEEEEeCccccchHHHHHHHHHhCcCCEEEEEeec
Confidence            99999998764   4557889999999999988654

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.70  E-value=1e-16  Score=137.44  Aligned_cols=113  Identities=20%  Similarity=0.207  Sum_probs=97.2

Q ss_pred             HHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC
Q psy7837         118 TYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG  196 (299)
Q Consensus       118 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  196 (299)
                      .+.+.+.....+.++.+|||||||+|.++..+++. +++|+++|+|+.+++.++++.+..    +...+++++++|+.+.
T Consensus        54 ~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~----gl~~~v~~~~~d~~~l  129 (282)
T d2o57a1          54 WLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQA----GLADNITVKYGSFLEI  129 (282)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHH----TCTTTEEEEECCTTSC
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccc----cccccccccccccccc
Confidence            45556677778899999999999999999999876 889999999999999999988773    3557899999999987


Q ss_pred             CCCCCCeeEEEecchhhhHH------HHHHHhccCCcEEEEEec
Q psy7837         197 YPDAAPYDVIYISQAIRDIP------WHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       197 ~~~~~~fD~v~~~~~~~~~~------~~~~~~L~~gG~lv~~~~  234 (299)
                      ..+.++||+|++..++++++      +++.++|||||++++...
T Consensus       130 ~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~  173 (282)
T d2o57a1         130 PCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP  173 (282)
T ss_dssp             SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEe
Confidence            66678999999998886543      689999999999999754

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=7.4e-17  Score=135.46  Aligned_cols=109  Identities=22%  Similarity=0.227  Sum_probs=92.5

Q ss_pred             HHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC
Q psy7837         121 KRINFYGHLVYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD  199 (299)
Q Consensus       121 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  199 (299)
                      +.+.....+.++.+|||||||+|.++..+++. +++|+|+|+|+.+++.++++.+..    +...+++|+.+|+.... .
T Consensus        23 ~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~----gl~~~v~~~~~d~~~~~-~   97 (245)
T d1nkva_          23 ATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEEL----GVSERVHFIHNDAAGYV-A   97 (245)
T ss_dssp             HHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHT----TCTTTEEEEESCCTTCC-C
T ss_pred             HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHh----hccccchhhhhHHhhcc-c
Confidence            33555667899999999999999999998875 789999999999999999998874    34567999999998864 4


Q ss_pred             CCCeeEEEecchhhhH------HHHHHHhccCCcEEEEEec
Q psy7837         200 AAPYDVIYISQAIRDI------PWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       200 ~~~fD~v~~~~~~~~~------~~~~~~~L~~gG~lv~~~~  234 (299)
                      .++||+|++..++.++      .+++.++|||||++++..+
T Consensus        98 ~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~  138 (245)
T d1nkva_          98 NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEP  138 (245)
T ss_dssp             SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             cCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEec
Confidence            5889999998887654      3689999999999999764

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.69  E-value=6.2e-17  Score=133.68  Aligned_cols=101  Identities=21%  Similarity=0.327  Sum_probs=88.1

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      +.++.+|||||||+|.++..+++.+.+|+|+|+|+++++.|++++..      ...++.++.+|+.......++||+|++
T Consensus        35 l~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~------~~~~~~~~~~d~~~l~~~~~~fD~I~~  108 (226)
T d1ve3a1          35 MKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKS------RESNVEFIVGDARKLSFEDKTFDYVIF  108 (226)
T ss_dssp             CCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH------TTCCCEEEECCTTSCCSCTTCEEEEEE
T ss_pred             cCCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhcc------ccccccccccccccccccCcCceEEEE
Confidence            46788999999999999999999999999999999999999998876      234678899999887666789999999


Q ss_pred             cchhhhH--------HHHHHHhccCCcEEEEEecC
Q psy7837         209 SQAIRDI--------PWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       209 ~~~~~~~--------~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ..+++++        .+++.++|||||++++...+
T Consensus       109 ~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         109 IDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             ESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            9998764        34789999999999988764

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.65  E-value=5.4e-16  Score=125.87  Aligned_cols=100  Identities=21%  Similarity=0.151  Sum_probs=86.7

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS  209 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  209 (299)
                      ..+.+|||||||+|..+..++++|.+|+++|+|+.+++.++++.+.     ....++.+...|.....++ ++||+|++.
T Consensus        29 ~~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~-----~~~~~~~~~~~d~~~~~~~-~~fD~I~~~  102 (198)
T d2i6ga1          29 VAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAA-----EGLDNLQTDLVDLNTLTFD-GEYDFILST  102 (198)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----TTCTTEEEEECCTTTCCCC-CCEEEEEEE
T ss_pred             CCCCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhh-----ccccchhhhheeccccccc-ccccEEEEe
Confidence            3456999999999999999999999999999999999999999887     5667899999998875554 789999999


Q ss_pred             chhhhH--------HHHHHHhccCCcEEEEEecC
Q psy7837         210 QAIRDI--------PWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       210 ~~~~~~--------~~~~~~~L~~gG~lv~~~~~  235 (299)
                      .+++++        .+++.++|+|||++++....
T Consensus       103 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  136 (198)
T d2i6ga1         103 VVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAM  136 (198)
T ss_dssp             SCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             eeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            988754        35788999999999997654

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.64  E-value=2.3e-16  Score=132.44  Aligned_cols=98  Identities=26%  Similarity=0.356  Sum_probs=82.4

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      .+++++|||+|||+|.+++.+++.|.+|+++|+|+.+++.|++|++.+     + .++.++++|.....+ .++||+|++
T Consensus       118 ~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n-----~-~~~~~~~~d~~~~~~-~~~fD~V~a  190 (254)
T d2nxca1         118 LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRN-----G-VRPRFLEGSLEAALP-FGPFDLLVA  190 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHT-----T-CCCEEEESCHHHHGG-GCCEEEEEE
T ss_pred             cCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHc-----C-CceeEEecccccccc-ccccchhhh
Confidence            367999999999999999999999999999999999999999999884     3 356788888765333 368999998


Q ss_pred             cchhh---hHHHHHHHhccCCcEEEEEe
Q psy7837         209 SQAIR---DIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       209 ~~~~~---~~~~~~~~~L~~gG~lv~~~  233 (299)
                      +...+   .+.+++.++|||||+++++.
T Consensus       191 ni~~~~l~~l~~~~~~~LkpGG~lilSg  218 (254)
T d2nxca1         191 NLYAELHAALAPRYREALVPGGRALLTG  218 (254)
T ss_dssp             ECCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence            86554   44568999999999999863

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.62  E-value=9.3e-15  Score=122.54  Aligned_cols=101  Identities=18%  Similarity=0.180  Sum_probs=84.8

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      ...+.++|||+|||+|..+..+++.|..|+|+|+|+.|++.|++++..      ...++++.++|+.....+ ++||+|+
T Consensus        38 ~~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~------~~~~i~~~~~d~~~l~~~-~~fD~I~  110 (251)
T d1wzna1          38 AKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKE------RNLKIEFLQGDVLEIAFK-NEFDAVT  110 (251)
T ss_dssp             CSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH------TTCCCEEEESCGGGCCCC-SCEEEEE
T ss_pred             cCCCCCEEEEeCCCCCccchhhcccceEEEEEeecccccccccccccc------ccccchheehhhhhcccc-cccchHh
Confidence            445677999999999999999999999999999999999999999876      233799999999876554 6899999


Q ss_pred             ec-chhhh--------HHHHHHHhccCCcEEEEEecC
Q psy7837         208 IS-QAIRD--------IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       208 ~~-~~~~~--------~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      +. .++.+        ..+++.++|||||++++...+
T Consensus       111 ~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~  147 (251)
T d1wzna1         111 MFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (251)
T ss_dssp             ECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence            86 34433        346899999999999997765

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.61  E-value=5.9e-15  Score=119.28  Aligned_cols=106  Identities=19%  Similarity=0.174  Sum_probs=87.7

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      ...++.+|||+|||+|.+++.+++.+.+|+++|+|+.+++.++++++.++   ....++++..+|..... ..++||+|+
T Consensus        49 ~~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~---l~~~~i~~~~~d~~~~~-~~~~fD~Ii  124 (194)
T d1dusa_          49 VVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNN---LDNYDIRVVHSDLYENV-KDRKYNKII  124 (194)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTT---CTTSCEEEEECSTTTTC-TTSCEEEEE
T ss_pred             CcCCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhC---CccceEEEEEcchhhhh-ccCCceEEE
Confidence            45678999999999999999999999999999999999999999998741   12346899999988744 457899999


Q ss_pred             ecchhh-------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837         208 ISQAIR-------DIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       208 ~~~~~~-------~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      ++.+++       .+.+++.++|+|||.+++......
T Consensus       125 ~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  161 (194)
T d1dusa_         125 TNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQ  161 (194)
T ss_dssp             ECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTH
T ss_pred             EcccEEecchhhhhHHHHHHHhcCcCcEEEEEEeCcC
Confidence            988754       345678899999999988766543

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1e-15  Score=126.51  Aligned_cols=109  Identities=17%  Similarity=0.195  Sum_probs=88.4

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCC
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAA  201 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  201 (299)
                      +.......++.+|||+|||+|.++..++.. +.+|+++|+|+++++.|++++..     ....+++|+++|+.....+.+
T Consensus        52 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~-----~~~~~~~f~~~d~~~~~~~~~  126 (222)
T d2ex4a1          52 LREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGE-----EGKRVRNYFCCGLQDFTPEPD  126 (222)
T ss_dssp             GC----CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGG-----GGGGEEEEEECCGGGCCCCSS
T ss_pred             HHhccCCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccc-----ccccccccccccccccccccc
Confidence            333445567789999999999999987655 56799999999999999999876     455688999999988666668


Q ss_pred             CeeEEEecchhhhH--------HHHHHHhccCCcEEEEEecCC
Q psy7837         202 PYDVIYISQAIRDI--------PWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       202 ~fD~v~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +||+|++..+++++        .+++.+.|+|||.+++..+..
T Consensus       127 ~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~  169 (222)
T d2ex4a1         127 SYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA  169 (222)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             cccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEccc
Confidence            99999999988664        357899999999999986544

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.60  E-value=1.4e-15  Score=125.87  Aligned_cols=102  Identities=16%  Similarity=0.273  Sum_probs=85.5

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      +....++.+|||||||+|.++..+++.|.+|+++|+|+++++.++++.         ..++.++.+|...... +++||+
T Consensus        15 ~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~---------~~~~~~~~~~~~~~~~-~~~fD~   84 (225)
T d2p7ia1          15 FTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRL---------KDGITYIHSRFEDAQL-PRRYDN   84 (225)
T ss_dssp             HGGGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHS---------CSCEEEEESCGGGCCC-SSCEEE
T ss_pred             hhhhCCCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhccc---------cccccccccccccccc-cccccc
Confidence            334456889999999999999999999999999999999999998763         3479999999887554 478999


Q ss_pred             EEecchhhhHH------HHHH-HhccCCcEEEEEecCCC
Q psy7837         206 IYISQAIRDIP------WHIV-DQLKLGGRMLFIKGHED  237 (299)
Q Consensus       206 v~~~~~~~~~~------~~~~-~~L~~gG~lv~~~~~~~  237 (299)
                      |++..+++++.      .++. ++|+|||.+++.+++..
T Consensus        85 I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~  123 (225)
T d2p7ia1          85 IVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNAN  123 (225)
T ss_dssp             EEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred             ccccceeEecCCHHHHHHHHHHHhcCCCceEEEEeCCcc
Confidence            99999997654      4666 78999999999987543

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.59  E-value=2.3e-15  Score=125.65  Aligned_cols=96  Identities=18%  Similarity=0.200  Sum_probs=79.9

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      ..++.+|||+|||+|.++..+++.|.+|+|+|+|+.+++.|+++...           .++.+|+.+...+.++||+|++
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~-----------~~~~~~~~~l~~~~~~fD~ii~  108 (246)
T d2avna1          40 LKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK-----------NVVEAKAEDLPFPSGAFEAVLA  108 (246)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS-----------CEEECCTTSCCSCTTCEEEEEE
T ss_pred             cCCCCEEEEECCCCchhcccccccceEEEEeeccccccccccccccc-----------ccccccccccccccccccceee
Confidence            45678999999999999999999999999999999999999986321           2567888876666689999997


Q ss_pred             c-chhhhH------HHHHHHhccCCcEEEEEecC
Q psy7837         209 S-QAIRDI------PWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       209 ~-~~~~~~------~~~~~~~L~~gG~lv~~~~~  235 (299)
                      . .+++++      .+++.++|||||.+++.+++
T Consensus       109 ~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~  142 (246)
T d2avna1         109 LGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDN  142 (246)
T ss_dssp             CSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             ecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECC
Confidence            5 566543      36899999999999998764

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.58  E-value=3.7e-15  Score=124.86  Aligned_cols=99  Identities=17%  Similarity=0.238  Sum_probs=82.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS  209 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  209 (299)
                      .++++|||+|||+|.++..+++.|.+|+|+|.|+.|++.|++++..      ...+++++++|+...... ++||+|++.
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~------~~~~v~~~~~d~~~~~~~-~~fD~i~~~  108 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRS------QGLKPRLACQDISNLNIN-RKFDLITCC  108 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHH------TTCCCEEECCCGGGCCCS-CCEEEEEEC
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccc------cCccceeeccchhhhccc-cccccccee
Confidence            4567999999999999999999999999999999999999998876      234799999999875443 689999975


Q ss_pred             -chhh---------hHHHHHHHhccCCcEEEEEecC
Q psy7837         210 -QAIR---------DIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       210 -~~~~---------~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                       .++.         .+.+++.++|+|||.+++.+.+
T Consensus       109 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  144 (246)
T d1y8ca_         109 LDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS  144 (246)
T ss_dssp             TTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             eeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence             3332         2446899999999999987643

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.57  E-value=8.5e-15  Score=123.18  Aligned_cols=104  Identities=19%  Similarity=0.189  Sum_probs=86.3

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCeeE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYDV  205 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~  205 (299)
                      ...++.+|||+|||+|..+..+++.+. .|+|+|+|+.+++.|+++....    ....++.+.++|+..... ...+||+
T Consensus        21 ~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~----~~~~~v~f~~~D~~~~~~~~~~~fD~   96 (252)
T d1ri5a_          21 YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNM----KRRFKVFFRAQDSYGRHMDLGKEFDV   96 (252)
T ss_dssp             HCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTS----CCSSEEEEEESCTTTSCCCCSSCEEE
T ss_pred             hCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhc----CCCcceEEEEcchhhhcccccccceE
Confidence            456789999999999999999998875 7999999999999999988763    344589999999875433 4568999


Q ss_pred             EEecchhhhH----------HHHHHHhccCCcEEEEEecC
Q psy7837         206 IYISQAIRDI----------PWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       206 v~~~~~~~~~----------~~~~~~~L~~gG~lv~~~~~  235 (299)
                      |++..+++++          ..++.++|+|||++++.++.
T Consensus        97 V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~  136 (252)
T d1ri5a_          97 ISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS  136 (252)
T ss_dssp             EEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             EEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence            9999888654          35788999999999998764

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.57  E-value=1.2e-14  Score=123.85  Aligned_cols=135  Identities=16%  Similarity=0.150  Sum_probs=95.8

Q ss_pred             cccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCH
Q psy7837          23 FMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP  102 (299)
Q Consensus        23 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~  102 (299)
                      |..+.+.|.+..|.+....+...|.    .....+++.|.  ++||++|||||||.|.++..+++..+.  +|+++++++
T Consensus        14 ~ld~~m~YS~~~~~~~~~tL~~AQ~----~k~~~~~~~l~--l~~g~~VLDiGCG~G~~a~~~a~~~g~--~v~gi~ls~   85 (280)
T d2fk8a1          14 FQDPTRTYSCAYFEPPELTLEEAQY----AKVDLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERFDV--NVIGLTLSK   85 (280)
T ss_dssp             TSCTTCCCSCCCCSSTTCCHHHHHH----HHHHHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHHCC--EEEEEESCH
T ss_pred             hCCCCCcEeeEEeCCCCCCHHHHHH----HHHHHHHHHcC--CCCCCEEEEecCCchHHHHHHHHhCce--eEEEecchH
Confidence            4444556777767654433333331    23344455544  799999999999999999998877653  677777777


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccC
Q psy7837         103 ELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIAL  182 (299)
Q Consensus       103 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~  182 (299)
                      ..++.+++.+.+.                                                                 +.
T Consensus        86 ~q~~~a~~~~~~~-----------------------------------------------------------------~l  100 (280)
T d2fk8a1          86 NQHARCEQVLASI-----------------------------------------------------------------DT  100 (280)
T ss_dssp             HHHHHHHHHHHTS-----------------------------------------------------------------CC
T ss_pred             HHHHHHHHHHHhh-----------------------------------------------------------------cc
Confidence            7777777766652                                                                 34


Q ss_pred             CCCeEEEEcCCCCCCCCCCCeeEEEecchhhhH--------HHHHHHhccCCcEEEEEe
Q psy7837         183 AENFEFVCADGRRGYPDAAPYDVIYISQAIRDI--------PWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       183 ~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~--------~~~~~~~L~~gG~lv~~~  233 (299)
                      ..++.+...|....   .++||.|++..+++++        .+++.++|||||++++..
T Consensus       101 ~~~~~~~~~d~~~~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         101 NRSRQVLLQGWEDF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             SSCEEEEESCGGGC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ccchhhhhhhhhhh---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence            56777877776553   2679999999988665        357899999999999965

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.56  E-value=4.1e-15  Score=119.93  Aligned_cols=108  Identities=18%  Similarity=0.111  Sum_probs=84.5

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcc-------cCCCCeEEEEcCCCCCCC-C
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAI-------ALAENFEFVCADGRRGYP-D  199 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~-------~~~~~v~~~~~d~~~~~~-~  199 (299)
                      .+.++.+|||+|||+|..+..++++|.+|+|+|+|+.+++.+++++.......       ....++.+..+|...... .
T Consensus        17 ~~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~   96 (201)
T d1pjza_          17 NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD   96 (201)
T ss_dssp             CCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred             CCCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc
Confidence            56789999999999999999999999999999999999999999875410000       013456788888776433 2


Q ss_pred             CCCeeEEEecchhhhH--------HHHHHHhccCCcEEEEEecC
Q psy7837         200 AAPYDVIYISQAIRDI--------PWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       200 ~~~fD~v~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ...||+|++...++++        .+++.++|||||.+++....
T Consensus        97 ~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~  140 (201)
T d1pjza_          97 IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLE  140 (201)
T ss_dssp             HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred             ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcc
Confidence            3579999998887654        35789999999998876544

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.56  E-value=4.2e-14  Score=120.93  Aligned_cols=107  Identities=18%  Similarity=0.038  Sum_probs=89.7

Q ss_pred             HHhhhcccCCCCeEEEEcCCCcHHHHHHHH-cCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCC
Q psy7837         122 RINFYGHLVYGSKVLDIGSGSGYLSALFAY-MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDA  200 (299)
Q Consensus       122 ~~~~~~~~~~~~~vLDiG~G~G~~~~~la~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  200 (299)
                      .+.....+.+|.+|||||||.|.++..+++ .|++|+++++|++.++.++++++..    +...++.+...|...   .+
T Consensus        52 ~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~----~l~~~v~~~~~d~~~---~~  124 (291)
T d1kpia_          52 LALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEV----DSPRRKEVRIQGWEE---FD  124 (291)
T ss_dssp             HHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHS----CCSSCEEEEECCGGG---CC
T ss_pred             HHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhh----ccchhhhhhhhcccc---cc
Confidence            456667889999999999999999998875 5999999999999999999998874    456788888888643   23


Q ss_pred             CCeeEEEecchhhhH---------------HHHHHHhccCCcEEEEEecC
Q psy7837         201 APYDVIYISQAIRDI---------------PWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       201 ~~fD~v~~~~~~~~~---------------~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ++||.|++...++++               .+++.++|||||++++....
T Consensus       125 ~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~  174 (291)
T d1kpia_         125 EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT  174 (291)
T ss_dssp             CCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred             cccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence            789999999988764               45799999999999997543

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.55  E-value=3.8e-14  Score=120.84  Aligned_cols=107  Identities=18%  Similarity=0.035  Sum_probs=90.6

Q ss_pred             HHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC
Q psy7837         121 KRINFYGHLVYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD  199 (299)
Q Consensus       121 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  199 (299)
                      +.+.....+.+|.+|||||||.|.+++.+++. |++|+++++|+..++.++++++..    +...++++..+|.....  
T Consensus        52 ~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~----g~~~~v~~~~~d~~~~~--  125 (285)
T d1kpga_          52 DLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANS----ENLRSKRVLLAGWEQFD--  125 (285)
T ss_dssp             HHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTC----CCCSCEEEEESCGGGCC--
T ss_pred             HHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhh----hhhhhhHHHHhhhhccc--
Confidence            34556678899999999999999999987765 999999999999999999988764    56789999999986642  


Q ss_pred             CCCeeEEEecchhhhH--------HHHHHHhccCCcEEEEEec
Q psy7837         200 AAPYDVIYISQAIRDI--------PWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       200 ~~~fD~v~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~  234 (299)
                       ++||.|++...++++        .+++.++|||||++++...
T Consensus       126 -~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i  167 (285)
T d1kpga_         126 -EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI  167 (285)
T ss_dssp             -CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             -ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEE
Confidence             679999998887665        3689999999999998654

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=1.4e-14  Score=122.92  Aligned_cols=98  Identities=23%  Similarity=0.249  Sum_probs=85.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      .++.+|||+|||+|.++..+++.  +.+++|+|+|+.+++.++++          ..++.+.++|+.......++||+|+
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~----------~~~~~~~~~d~~~l~~~~~sfD~v~  152 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR----------YPQVTFCVASSHRLPFSDTSMDAII  152 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH----------CTTSEEEECCTTSCSBCTTCEEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc----------cccccceeeehhhccCCCCCEEEEe
Confidence            46789999999999999999988  56899999999999998865          3478999999998777778999999


Q ss_pred             ecchhhhHHHHHHHhccCCcEEEEEecCCCC
Q psy7837         208 ISQAIRDIPWHIVDQLKLGGRMLFIKGHEDD  238 (299)
Q Consensus       208 ~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  238 (299)
                      +....++ .+++.++|||||.+++.++++..
T Consensus       153 ~~~~~~~-~~e~~rvLkpgG~l~~~~p~~~~  182 (268)
T d1p91a_         153 RIYAPCK-AEELARVVKPGGWVITATPGPRH  182 (268)
T ss_dssp             EESCCCC-HHHHHHHEEEEEEEEEEEECTTT
T ss_pred             ecCCHHH-HHHHHHHhCCCcEEEEEeeCCcc
Confidence            9887766 47899999999999999987643

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.54  E-value=3.9e-14  Score=116.97  Aligned_cols=101  Identities=16%  Similarity=0.210  Sum_probs=83.7

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHc----CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCee
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYM----GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYD  204 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~----~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  204 (299)
                      ..++.+|||+|||+|..+..+++.    +.+|+|+|+|+.|++.|++++...    ....++.+..+|......  ..+|
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~----~~~~~~~~~~~d~~~~~~--~~~d  110 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY----HSEIPVEILCNDIRHVEI--KNAS  110 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTS----CCSSCEEEECSCTTTCCC--CSEE
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhh----cccchhhhccchhhcccc--ccce
Confidence            578899999999999999999873    779999999999999999998763    455678888888765433  5689


Q ss_pred             EEEecchhhhH--------HHHHHHhccCCcEEEEEecC
Q psy7837         205 VIYISQAIRDI--------PWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       205 ~v~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ++++...++++        .++++++|||||.+++....
T Consensus       111 ~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~  149 (225)
T d1im8a_         111 MVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF  149 (225)
T ss_dssp             EEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             eeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccccc
Confidence            99998877543        46899999999999997644

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.54  E-value=2e-14  Score=122.89  Aligned_cols=101  Identities=22%  Similarity=0.370  Sum_probs=86.2

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCee
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYD  204 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  204 (299)
                      .+.++.+|||+|||+|.++..++..   +.+|+++|+|+.+++.|++++..      ...+++|.++|+.....+ ++||
T Consensus        24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~------~~~~~~f~~~d~~~~~~~-~~fD   96 (281)
T d2gh1a1          24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL------LPYDSEFLEGDATEIELN-DKYD   96 (281)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHS------SSSEEEEEESCTTTCCCS-SCEE
T ss_pred             ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccc------cccccccccccccccccc-CCce
Confidence            4567889999999999999999875   57899999999999999999876      234799999998875443 6799


Q ss_pred             EEEecchhhhH------HHHHHHhccCCcEEEEEecC
Q psy7837         205 VIYISQAIRDI------PWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       205 ~v~~~~~~~~~------~~~~~~~L~~gG~lv~~~~~  235 (299)
                      +|++..+++++      .+++.++|||||.+++..+.
T Consensus        97 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~  133 (281)
T d2gh1a1          97 IAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  133 (281)
T ss_dssp             EEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence            99999998764      46899999999999998754

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.52  E-value=1.7e-14  Score=117.55  Aligned_cols=97  Identities=14%  Similarity=0.145  Sum_probs=81.3

Q ss_pred             hhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCee
Q psy7837         125 FYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYD  204 (299)
Q Consensus       125 ~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  204 (299)
                      .+....++.+|||||||+|.++..++    +++|+|+|+.+++.++++            ++.++++|+.+.....++||
T Consensus        30 ~~~~~~~~~~vLDiGcG~G~~~~~~~----~~~giD~s~~~~~~a~~~------------~~~~~~~d~~~l~~~~~~fD   93 (208)
T d1vlma_          30 AVKCLLPEGRGVEIGVGTGRFAVPLK----IKIGVEPSERMAEIARKR------------GVFVLKGTAENLPLKDESFD   93 (208)
T ss_dssp             HHHHHCCSSCEEEETCTTSTTHHHHT----CCEEEESCHHHHHHHHHT------------TCEEEECBTTBCCSCTTCEE
T ss_pred             HHHhhCCCCeEEEECCCCcccccccc----eEEEEeCChhhccccccc------------cccccccccccccccccccc
Confidence            33445667799999999999988774    468999999999998764            68899999988766678999


Q ss_pred             EEEecchhhhHH------HHHHHhccCCcEEEEEecCCC
Q psy7837         205 VIYISQAIRDIP------WHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       205 ~v~~~~~~~~~~------~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      +|++..++++++      +++.++|+|||.+++..+...
T Consensus        94 ~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~  132 (208)
T d1vlma_          94 FALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRE  132 (208)
T ss_dssp             EEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             ccccccccccccccccchhhhhhcCCCCceEEEEecCCc
Confidence            999999987654      589999999999999887654

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2e-14  Score=119.20  Aligned_cols=109  Identities=15%  Similarity=0.034  Sum_probs=85.3

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCC----------c--ccCCCCeEEEEcCCC
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAP----------A--IALAENFEFVCADGR  194 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~----------~--~~~~~~v~~~~~d~~  194 (299)
                      ....++.+|||+|||+|..+..+++.|.+|+|+|+|+.+++.++++......          .  .....++++.++|..
T Consensus        41 l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  120 (229)
T d2bzga1          41 LKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF  120 (229)
T ss_dssp             HTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred             cCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence            3456789999999999999999999999999999999999999887543100          0  012357899999987


Q ss_pred             CCC-CCCCCeeEEEecchhhhH--------HHHHHHhccCCcEEEEEecC
Q psy7837         195 RGY-PDAAPYDVIYISQAIRDI--------PWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       195 ~~~-~~~~~fD~v~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ... ...+.||+|+....++++        .+++.++|||||++++....
T Consensus       121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~  170 (229)
T d2bzga1         121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLS  170 (229)
T ss_dssp             GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcc
Confidence            543 344789999988877544        35899999999998887644

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.50  E-value=8.1e-14  Score=114.79  Aligned_cols=115  Identities=23%  Similarity=0.256  Sum_probs=89.1

Q ss_pred             chHHHHHHHHhc-cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccC
Q psy7837          52 SDHCLVLELLSG-HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLV  130 (299)
Q Consensus        52 ~~~~~~~~~l~~-~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~  130 (299)
                      .+.+.++..+.. .++||++|||+|||+|+.+..+++.+|++|+|+++|+++.+++.+++....                
T Consensus        57 Klaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~----------------  120 (227)
T d1g8aa_          57 KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE----------------  120 (227)
T ss_dssp             HHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS----------------
T ss_pred             HHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh----------------
Confidence            444555443321 479999999999999999999999999999999999999999988776543                


Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC---CCCCCCeeEEE
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG---YPDAAPYDVIY  207 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~fD~v~  207 (299)
                                                                          ..++..+..|....   ......+|+|+
T Consensus       121 ----------------------------------------------------~~~~~~i~~d~~~~~~~~~~~~~vD~i~  148 (227)
T d1g8aa_         121 ----------------------------------------------------RRNIVPILGDATKPEEYRALVPKVDVIF  148 (227)
T ss_dssp             ----------------------------------------------------CTTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred             ----------------------------------------------------cCCceEEEEECCCcccccccccceEEEE
Confidence                                                                35777888887632   22336799999


Q ss_pred             ecchhh----hHHHHHHHhccCCcEEEEEec
Q psy7837         208 ISQAIR----DIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       208 ~~~~~~----~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      ++....    .+.+++.+.|||||++++...
T Consensus       149 ~d~~~~~~~~~~l~~~~~~LkpgG~lvi~~k  179 (227)
T d1g8aa_         149 EDVAQPTQAKILIDNAEVYLKRGGYGMIAVK  179 (227)
T ss_dssp             ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEccccchHHHHHHHHHHhcccCCeEEEEEE
Confidence            876543    355789999999999998753

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.49  E-value=1e-13  Score=116.50  Aligned_cols=101  Identities=21%  Similarity=0.211  Sum_probs=84.6

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      ..++.+|||+|||+|.++..++.. ...|+++|+++.+++.|++++..       ..++++.++|+....++.++||+|+
T Consensus        91 ~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~I~  163 (254)
T d1xtpa_          91 GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG-------MPVGKFILASMETATLPPNTYDLIV  163 (254)
T ss_dssp             TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT-------SSEEEEEESCGGGCCCCSSCEEEEE
T ss_pred             CCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccc-------cccceeEEccccccccCCCccceEE
Confidence            356789999999999999987755 56799999999999999988643       3568999999987666668999999


Q ss_pred             ecchhhhHH--------HHHHHhccCCcEEEEEecCC
Q psy7837         208 ISQAIRDIP--------WHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       208 ~~~~~~~~~--------~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +..+++++.        +++.+.|+|||.+++..+..
T Consensus       164 ~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~  200 (254)
T d1xtpa_         164 IQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCS  200 (254)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             eeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCC
Confidence            999987653        47899999999999976543

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.47  E-value=2.5e-13  Score=110.68  Aligned_cols=101  Identities=21%  Similarity=0.276  Sum_probs=80.7

Q ss_pred             cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCc
Q psy7837          64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSG  143 (299)
Q Consensus        64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G  143 (299)
                      .++||++|||+|||+|+.+..+++.++ +|+|+|+|+++.+++.+++....                             
T Consensus        53 ~lkpg~~VLDlGcG~G~~~~~la~~v~-~g~V~gvDis~~~i~~a~~~a~~-----------------------------  102 (209)
T d1nt2a_          53 KLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRE-----------------------------  102 (209)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHH-----------------------------
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHhcc-CCeEEEEeCCHHHHHHHHHHhhc-----------------------------
Confidence            479999999999999999999999985 57999999999999988877655                             


Q ss_pred             HHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC---CCCCeeEEEecchhh----hHH
Q psy7837         144 YLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP---DAAPYDVIYISQAIR----DIP  216 (299)
Q Consensus       144 ~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~v~~~~~~~----~~~  216 (299)
                                                             ..|+.++.+|......   ....+|+++.+....    .+.
T Consensus       103 ---------------------------------------~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~~~~~~~~~~l  143 (209)
T d1nt2a_         103 ---------------------------------------RNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILK  143 (209)
T ss_dssp             ---------------------------------------CSSEEEECSCTTCGGGTTTTCCCEEEEEECCCSTTHHHHHH
T ss_pred             ---------------------------------------cCCceEEEeeccCccccccccceEEEEEecccChhhHHHHH
Confidence                                                   2489999999875322   124577777664432    345


Q ss_pred             HHHHHhccCCcEEEEEe
Q psy7837         217 WHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       217 ~~~~~~L~~gG~lv~~~  233 (299)
                      .++.+.|||||.+++..
T Consensus       144 ~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         144 ANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             HHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHhccCCeEEEEE
Confidence            68899999999999875

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=1e-13  Score=119.02  Aligned_cols=104  Identities=16%  Similarity=0.207  Sum_probs=77.5

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC---CCCCCCCeeEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR---GYPDAAPYDVI  206 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~~~~fD~v  206 (299)
                      .++.+|||+|||+|.++..+++.|.+|+|+|+|+.|++.|+++....... .......+...+...   ..+...+||.|
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~fd~v  133 (292)
T d1xvaa_          55 HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKE-PAFDKWVIEEANWLTLDKDVPAGDGFDAV  133 (292)
T ss_dssp             TTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTS-HHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccc-cccceeeeeeccccccccccCCCCCceEE
Confidence            45789999999999999999999999999999999999999987652110 011234455555432   12334679999


Q ss_pred             Eecc-hhhh-------------HHHHHHHhccCCcEEEEEec
Q psy7837         207 YISQ-AIRD-------------IPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       207 ~~~~-~~~~-------------~~~~~~~~L~~gG~lv~~~~  234 (299)
                      ++.. ++.+             +.+++.++|||||.|++...
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  175 (292)
T d1xvaa_         134 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  175 (292)
T ss_dssp             EECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence            8753 4433             56789999999999999764

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.9e-13  Score=115.20  Aligned_cols=109  Identities=22%  Similarity=0.214  Sum_probs=84.4

Q ss_pred             HHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC
Q psy7837         118 TYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG  196 (299)
Q Consensus       118 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  196 (299)
                      .+.+.|.......++++|||||||+|.+++.+++.|+ +|+++|.++.+....+.+.+.     +...++.++.+|..+.
T Consensus        22 ~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~-----~~~~~i~~~~~~~~~l   96 (311)
T d2fyta1          22 SYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLN-----KLEDTITLIKGKIEEV   96 (311)
T ss_dssp             HHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHT-----TCTTTEEEEESCTTTS
T ss_pred             HHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHh-----CCCccceEEEeeHHHh
Confidence            3445566666778899999999999999999999986 699999999887544443333     5678999999999886


Q ss_pred             CCCCCCeeEEEecchh---------hhHHHHHHHhccCCcEEEE
Q psy7837         197 YPDAAPYDVIYISQAI---------RDIPWHIVDQLKLGGRMLF  231 (299)
Q Consensus       197 ~~~~~~fD~v~~~~~~---------~~~~~~~~~~L~~gG~lv~  231 (299)
                      ..+..+||+|++....         ..+.....++|+|||+++-
T Consensus        97 ~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1          97 HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             CCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             cCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence            6556789999985443         2333456789999998863

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.43  E-value=3.5e-13  Score=109.24  Aligned_cols=101  Identities=15%  Similarity=0.220  Sum_probs=84.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCCCCeeEE
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDAAPYDVI  206 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v  206 (299)
                      ++..|||||||+|.++..+|+.  +..++|+|+++.++..+.++++.     ....|+.++.+|+....  .+.+++|.|
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~-----~~l~Nv~~~~~Da~~l~~~~~~~~~d~v  103 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKD-----SEAQNVKLLNIDADTLTDVFEPGEVKRV  103 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH-----SCCSSEEEECCCGGGHHHHCCTTSCCEE
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHH-----HhccCchhcccchhhhhcccCchhhhcc
Confidence            3568999999999999999987  57799999999999999999988     56789999999987532  345789999


Q ss_pred             Eecchhh--------------hHHHHHHHhccCCcEEEEEecCC
Q psy7837         207 YISQAIR--------------DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       207 ~~~~~~~--------------~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ++..+.+              .+.+.+.++|||||.|++.+...
T Consensus       104 ~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~  147 (204)
T d2fcaa1         104 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR  147 (204)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH
T ss_pred             ccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECCh
Confidence            8877653              35678999999999999986443

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.42  E-value=6.6e-13  Score=115.71  Aligned_cols=105  Identities=19%  Similarity=0.203  Sum_probs=83.2

Q ss_pred             HHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC
Q psy7837         121 KRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD  199 (299)
Q Consensus       121 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  199 (299)
                      +.|.......++++|||||||+|.+++.+++.|+ .|+++|.++ ++..++++.+.+    +...++.++.+|+.....+
T Consensus        28 ~aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~----~~~~~i~~i~~~~~~l~~~  102 (328)
T d1g6q1_          28 NAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELN----GFSDKITLLRGKLEDVHLP  102 (328)
T ss_dssp             HHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHT----TCTTTEEEEESCTTTSCCS
T ss_pred             HHHHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHh----CccccceEEEeehhhccCc
Confidence            3344444556799999999999999999999986 699999996 667788877764    5677899999999876666


Q ss_pred             CCCeeEEEecchh---------hhHHHHHHHhccCCcEEE
Q psy7837         200 AAPYDVIYISQAI---------RDIPWHIVDQLKLGGRML  230 (299)
Q Consensus       200 ~~~fD~v~~~~~~---------~~~~~~~~~~L~~gG~lv  230 (299)
                      .++||+|++....         ..+.....++|||||+++
T Consensus       103 ~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         103 FPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             SSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             ccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            6889999986543         234456789999999885

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=4.5e-13  Score=110.81  Aligned_cols=97  Identities=18%  Similarity=0.126  Sum_probs=76.6

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcC-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC--CCCCCCCeeEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMG-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR--GYPDAAPYDVI  206 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~v  206 (299)
                      .+|.+|||||||+|..+..+++.+ .+|+++|+|+.+++.|++++..      ...++.++..|+..  ...+.++||.|
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~fD~i  125 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPR------QTHKVIPLKGLWEDVAPTLPDGHFDGI  125 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGG------CSSEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhh------cccccccccccccccccccccccccce
Confidence            458899999999999999999875 5799999999999999999866      34567777777652  22344789999


Q ss_pred             Eecchh-----h------hHHHHHHHhccCCcEEEEE
Q psy7837         207 YISQAI-----R------DIPWHIVDQLKLGGRMLFI  232 (299)
Q Consensus       207 ~~~~~~-----~------~~~~~~~~~L~~gG~lv~~  232 (299)
                      +.+...     .      ...+++.++|||||+|++.
T Consensus       126 ~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         126 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             EECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             eecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            876542     2      2346799999999999874

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=9.9e-13  Score=113.98  Aligned_cols=105  Identities=23%  Similarity=0.205  Sum_probs=82.6

Q ss_pred             HHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC
Q psy7837         121 KRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD  199 (299)
Q Consensus       121 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  199 (299)
                      +.|.......++++|||||||+|.+++.+++.|+ +|+++|.++.+ ..++++++.+    +...++.++++|..+...+
T Consensus        23 ~ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~n----~~~~~v~~~~~~~~~~~~~   97 (316)
T d1oria_          23 NSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKAN----KLDHVVTIIKGKVEEVELP   97 (316)
T ss_dssp             HHHHTCHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHHHT----TCTTTEEEEESCTTTCCCS
T ss_pred             HHHHhccccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHHHh----CCccccceEeccHHHcccc
Confidence            3444444556899999999999999999999986 59999999764 6666666664    5667899999999886666


Q ss_pred             CCCeeEEEecchh---------hhHHHHHHHhccCCcEEE
Q psy7837         200 AAPYDVIYISQAI---------RDIPWHIVDQLKLGGRML  230 (299)
Q Consensus       200 ~~~fD~v~~~~~~---------~~~~~~~~~~L~~gG~lv  230 (299)
                      .++||+|++....         ..+.+.+.++|+|||.++
T Consensus        98 ~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_          98 VEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             SSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             cceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            6889999875442         345567889999999886

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.39  E-value=5.7e-13  Score=109.99  Aligned_cols=114  Identities=18%  Similarity=0.167  Sum_probs=81.4

Q ss_pred             chHHHHHHHHhc-cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccC
Q psy7837          52 SDHCLVLELLSG-HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLV  130 (299)
Q Consensus        52 ~~~~~~~~~l~~-~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~  130 (299)
                      .+.+.++..+.. .++||++|||+|||+|+.+..+++. +++|.|+|+|+++.+++.+++....                
T Consensus        58 klaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~-~~~g~V~aVDiS~~~i~~a~~~a~~----------------  120 (230)
T d1g8sa_          58 KLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADI-ADKGIVYAIEYAPRIMRELLDACAE----------------  120 (230)
T ss_dssp             HHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHH-TTTSEEEEEESCHHHHHHHHHHTTT----------------
T ss_pred             HHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHh-CCCCEEEEEeCcHHHHHHHHHHHhh----------------
Confidence            444444443322 3699999999999999999999996 4678999999999999887765433                


Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-CCCCCeeEEEec
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-PDAAPYDVIYIS  209 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~  209 (299)
                                                                          ..++.++.+|..... .....+|++++.
T Consensus       121 ----------------------------------------------------~~ni~~i~~d~~~~~~~~~~~~~v~~i~  148 (230)
T d1g8sa_         121 ----------------------------------------------------RENIIPILGDANKPQEYANIVEKVDVIY  148 (230)
T ss_dssp             ----------------------------------------------------CTTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred             ----------------------------------------------------hcccceEEEeeccCcccccccceeEEee
Confidence                                                                357888888877532 122345554443


Q ss_pred             chh------hhHHHHHHHhccCCcEEEEEec
Q psy7837         210 QAI------RDIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       210 ~~~------~~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      ..+      ..+..++.+.|||||.+++...
T Consensus       149 ~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k  179 (230)
T d1g8sa_         149 EDVAQPNQAEILIKNAKWFLKKGGYGMIAIK  179 (230)
T ss_dssp             ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccchHHHHHHHHHHHHhcccCceEEEEee
Confidence            333      2345689999999999998754

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.39  E-value=1.6e-12  Score=100.54  Aligned_cols=107  Identities=16%  Similarity=0.181  Sum_probs=84.8

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-CCCCCe
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-PDAAPY  203 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~f  203 (299)
                      +.....|.+|||+|||+|.+++.++.+|+ +|+++|.++.+++.++++++.+    ....+++++++|+.... ...++|
T Consensus         9 l~~~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~----~~~~~~~ii~~D~~~~l~~~~~~f   84 (152)
T d2esra1           9 IGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMT----KAENRFTLLKMEAERAIDCLTGRF   84 (152)
T ss_dssp             HCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTT----TCGGGEEEECSCHHHHHHHBCSCE
T ss_pred             HHhhCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhc----ccccchhhhccccccccccccccc
Confidence            44456799999999999999999999986 6999999999999999999884    34567999999987532 224679


Q ss_pred             eEEEecchhhh-----HHHHH--HHhccCCcEEEEEecCC
Q psy7837         204 DVIYISQAIRD-----IPWHI--VDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       204 D~v~~~~~~~~-----~~~~~--~~~L~~gG~lv~~~~~~  236 (299)
                      |+|+++++...     ..+.+  .+.|+++|.+++.....
T Consensus        85 DiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~~  124 (152)
T d2esra1          85 DLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKT  124 (152)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             ceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEEeCCC
Confidence            99999987532     22333  34699999999976543

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.39  E-value=1.4e-12  Score=109.47  Aligned_cols=101  Identities=22%  Similarity=0.259  Sum_probs=83.4

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCee
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYD  204 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  204 (299)
                      ..+.+.++|||||||+|.++..+++.  +.+++++|+ +.+++.+++++...    +...+++++.+|+....+  .+||
T Consensus        76 ~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~----~~~~rv~~~~~D~~~~~~--~~~D  148 (253)
T d1tw3a2          76 YDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDE----GLSDRVDVVEGDFFEPLP--RKAD  148 (253)
T ss_dssp             SCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHT----TCTTTEEEEECCTTSCCS--SCEE
T ss_pred             cCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHh----hcccchhhccccchhhcc--cchh
Confidence            34566789999999999999999987  567999998 67899999988773    456789999999876433  4699


Q ss_pred             EEEecchhhhH--------HHHHHHhccCCcEEEEEec
Q psy7837         205 VIYISQAIRDI--------PWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       205 ~v~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~  234 (299)
                      +|++..+++++        .+++.++|||||++++...
T Consensus       149 ~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~  186 (253)
T d1tw3a2         149 AIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER  186 (253)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             heeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence            99999988754        4578999999999999754

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.38  E-value=1.2e-12  Score=110.06  Aligned_cols=100  Identities=23%  Similarity=0.172  Sum_probs=85.2

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcC-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMG-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      +.+|.+|||+|||+|.+++.+++.+ ++|+++|+++.+++.+++|++.|    +...+++++++|+..... .+.||.|+
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n----~l~~~v~~~~~D~~~~~~-~~~~D~Ii  179 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLN----KVEDRMSAYNMDNRDFPG-ENIADRIL  179 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHT----TCTTTEEEECSCTTTCCC-CSCEEEEE
T ss_pred             cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHh----CCCceEEEEEcchHHhcc-CCCCCEEE
Confidence            5789999999999999999999887 58999999999999999999985    455679999999987544 47899999


Q ss_pred             ecchh--hhHHHHHHHhccCCcEEEEEe
Q psy7837         208 ISQAI--RDIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       208 ~~~~~--~~~~~~~~~~L~~gG~lv~~~  233 (299)
                      ++.+.  ....+.+.+.|++||++.+..
T Consensus       180 ~~~p~~~~~~l~~a~~~l~~gG~lh~~~  207 (260)
T d2frna1         180 MGYVVRTHEFIPKALSIAKDGAIIHYHN  207 (260)
T ss_dssp             ECCCSSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             ECCCCchHHHHHHHHhhcCCCCEEEEEe
Confidence            98654  446678889999999986643

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.35  E-value=7.5e-13  Score=114.61  Aligned_cols=102  Identities=19%  Similarity=0.211  Sum_probs=85.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC----CCCCCCeeE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG----YPDAAPYDV  205 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~  205 (299)
                      .+|++|||++||+|.+++.+++.+.+|+++|+|+.+++.+++|++.     ++..+++++++|..+.    .....+||+
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~-----ngl~~~~~i~~d~~~~~~~~~~~~~~fD~  218 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARL-----NGLGNVRVLEANAFDLLRRLEKEGERFDL  218 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHH-----TTCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             hCCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHH-----cCCCCcceeeccHHHHhhhhHhhhcCCCE
Confidence            4689999999999999999988778899999999999999999999     4567899999998642    123468999


Q ss_pred             EEecchh---------------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         206 IYISQAI---------------RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       206 v~~~~~~---------------~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      |+++++.               ..+...+.++|+|||.|++...+.
T Consensus       219 Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~  264 (318)
T d1wxxa2         219 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH  264 (318)
T ss_dssp             EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            9999863               134457889999999999987654

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=8.6e-12  Score=105.09  Aligned_cols=131  Identities=15%  Similarity=0.279  Sum_probs=91.3

Q ss_pred             cccccccccccCCcchHHHHHHHH-hccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhH
Q psy7837          38 IPHNIGHNAFMESPSDHCLVLELL-SGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA  116 (299)
Q Consensus        38 ~~~~~~~~~~~~~p~~~~~~~~~l-~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~  116 (299)
                      ....+..+..++.|... .+++.. ......+.+|||+|||+|..+..++.... +.+++++|+++..++.|+++...  
T Consensus        79 ~~~~v~~~VlIPRpeTE-~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p-~~~v~avDis~~Al~~A~~Na~~--  154 (274)
T d2b3ta1          79 LPLFVSPATLIPRPDTE-CLVEQALARLPEQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQH--  154 (274)
T ss_dssp             EEEECCTTSCCCCTTHH-HHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHH--
T ss_pred             eEEEEeccccccccchh-hhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCC-cceeeeccchhHHHhHHHHHHHH--
Confidence            34445555666666653 444433 33335567899999999999999887653 45666666666666666666655  


Q ss_pred             HHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC
Q psy7837         117 ETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG  196 (299)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  196 (299)
                                                                                      ....+++++++|....
T Consensus       155 ----------------------------------------------------------------~~~~~v~~~~~d~~~~  170 (274)
T d2b3ta1         155 ----------------------------------------------------------------LAIKNIHILQSDWFSA  170 (274)
T ss_dssp             ----------------------------------------------------------------HTCCSEEEECCSTTGG
T ss_pred             ----------------------------------------------------------------hCcccceeeecccccc
Confidence                                                                            3456899999998875


Q ss_pred             CCCCCCeeEEEecchhh-------------------------------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837         197 YPDAAPYDVIYISQAIR-------------------------------DIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       197 ~~~~~~fD~v~~~~~~~-------------------------------~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      ... .+||+|++|++.-                               .+.+...+.|++||.+++..+...
T Consensus       171 ~~~-~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q  241 (274)
T d2b3ta1         171 LAG-QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQ  241 (274)
T ss_dssp             GTT-CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSC
T ss_pred             cCC-CceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchH
Confidence            443 6899999998741                               133467889999999999876543

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.7e-12  Score=110.49  Aligned_cols=112  Identities=17%  Similarity=0.144  Sum_probs=81.3

Q ss_pred             HHhhhcccCCCCeEEEEcCCCcHHHHHHHHc--------CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEE--Ec
Q psy7837         122 RINFYGHLVYGSKVLDIGSGSGYLSALFAYM--------GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV--CA  191 (299)
Q Consensus       122 ~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~--------~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~--~~  191 (299)
                      .+..+....+..+|||||||+|.++..++..        +..++++|+|+.+++.++++++..    ....++.+.  ..
T Consensus        31 ~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~----~~~~~~~~~~~~~  106 (280)
T d1jqea_          31 IIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKI----SNLENVKFAWHKE  106 (280)
T ss_dssp             HTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTC----CSCTTEEEEEECS
T ss_pred             HHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhc----cccccccccchhh
Confidence            3444445556668999999999998877543        245899999999999999988652    234455443  33


Q ss_pred             CCC------CCCCCCCCeeEEEecchhhhHH------HHHHHhccCCcEEEEEecCCC
Q psy7837         192 DGR------RGYPDAAPYDVIYISQAIRDIP------WHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       192 d~~------~~~~~~~~fD~v~~~~~~~~~~------~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      ++.      ......++||+|++..+++++.      +++.++|+|||.|++......
T Consensus       107 ~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~  164 (280)
T d1jqea_         107 TSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGS  164 (280)
T ss_dssp             CHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTT
T ss_pred             hhhhhcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCc
Confidence            322      1123457899999999987653      589999999999999876654

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.34  E-value=6.5e-12  Score=101.57  Aligned_cols=101  Identities=17%  Similarity=0.216  Sum_probs=84.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC--CCCCCCeeEE
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG--YPDAAPYDVI  206 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~v  206 (299)
                      .+..|||||||+|.++..+|+.  ...++|+|+++.++..+.+++..     ....|+.++.+|+...  ..+..++|.|
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~-----~~l~Ni~~~~~da~~l~~~~~~~~~~~i  105 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLE-----VGVPNIKLLWVDGSDLTDYFEDGEIDRL  105 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH-----HCCSSEEEEECCSSCGGGTSCTTCCSEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhh-----hccccceeeecCHHHHhhhccCCceehh
Confidence            3568999999999999999987  56799999999999999998887     5678999999998753  2345789999


Q ss_pred             Eecchhh--------------hHHHHHHHhccCCcEEEEEecCC
Q psy7837         207 YISQAIR--------------DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       207 ~~~~~~~--------------~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ++..+-+              .+.+.+.++|||||.|++.+...
T Consensus       106 ~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~  149 (204)
T d1yzha1         106 YLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR  149 (204)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCH
T ss_pred             cccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCc
Confidence            9887642              45678999999999999987543

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.34  E-value=1.6e-12  Score=112.89  Aligned_cols=105  Identities=16%  Similarity=0.288  Sum_probs=86.7

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC----CCCCCe
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY----PDAAPY  203 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~f  203 (299)
                      ..++.+|||++||+|.+++.+++.|+ +|+++|+++.+++.+++|++.|    +...+++++++|+....    ....+|
T Consensus       143 ~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~n----gl~~~~~~~~~d~~~~~~~~~~~~~~f  218 (324)
T d2as0a2         143 VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLN----GVEDRMKFIVGSAFEEMEKLQKKGEKF  218 (324)
T ss_dssp             CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT----TCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred             cCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHc----CCCccceeeechhhhhhHHHHhccCCC
Confidence            46799999999999999999999986 6999999999999999999985    34468999999976421    234689


Q ss_pred             eEEEecchh---------------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         204 DVIYISQAI---------------RDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       204 D~v~~~~~~---------------~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      |+|+++++.               ..+...+.++|+|||+|+++.....
T Consensus       219 D~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~  267 (324)
T d2as0a2         219 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH  267 (324)
T ss_dssp             EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred             CchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence            999999874               2345677889999999999876553

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=9.3e-12  Score=101.66  Aligned_cols=122  Identities=18%  Similarity=0.210  Sum_probs=97.6

Q ss_pred             cccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhh
Q psy7837          46 AFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINF  125 (299)
Q Consensus        46 ~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~  125 (299)
                      ..+.+|.. ..++..|.. .....+|||+||++||.|.++++.++++|+++++|.++...+.|++++.+.          
T Consensus        40 ~~~i~~~~-g~lL~~L~~-~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~a----------  107 (219)
T d2avda1          40 DSMMTCEQ-AQLLANLAR-LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA----------  107 (219)
T ss_dssp             GGSCCHHH-HHHHHHHHH-HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT----------
T ss_pred             CcccCHHH-HHHHHHHHH-ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhc----------
Confidence            34455544 677777764 566789999999999999999999988999999999999999999999873          


Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC------CC
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY------PD  199 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~------~~  199 (299)
                                                                             +...+++++.+|+....      ..
T Consensus       108 -------------------------------------------------------g~~~~i~~~~Gda~e~l~~~~~~~~  132 (219)
T d2avda1         108 -------------------------------------------------------EAEHKIDLRLKPALETLDELLAAGE  132 (219)
T ss_dssp             -------------------------------------------------------TCTTTEEEEESCHHHHHHHHHHTTC
T ss_pred             -------------------------------------------------------CccceEEEEEeehhhcchhhhhhcc
Confidence                                                                   45678999999976321      22


Q ss_pred             CCCeeEEEecchhhhH---HHHHHHhccCCcEEEEEec
Q psy7837         200 AAPYDVIYISQAIRDI---PWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       200 ~~~fD~v~~~~~~~~~---~~~~~~~L~~gG~lv~~~~  234 (299)
                      .++||+|+.+..-...   .+.+.++|+|||.+++..-
T Consensus       133 ~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~Dn~  170 (219)
T d2avda1         133 AGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRV  170 (219)
T ss_dssp             TTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             cCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence            4679999999875543   4688899999999999654

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.29  E-value=2.9e-12  Score=100.97  Aligned_cols=105  Identities=14%  Similarity=0.158  Sum_probs=77.4

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC--CCCCCCCeeE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR--GYPDAAPYDV  205 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~  205 (299)
                      ...++.+|||+|||+|.+++.++.+|++++++|.++.+++.+++|++.+    +...++....+|...  ......+||+
T Consensus        38 ~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~----~~~~~v~~~~~d~~~~~~~~~~~~fD~  113 (171)
T d1ws6a1          38 RYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRT----GLGARVVALPVEVFLPEAKAQGERFTV  113 (171)
T ss_dssp             HCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHH----TCCCEEECSCHHHHHHHHHHTTCCEEE
T ss_pred             cccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhh----ccccceeeeehhcccccccccCCccce
Confidence            3467899999999999999999999999999999999999999999884    233334333333221  1123367999


Q ss_pred             EEecchhh----hHHHHH--HHhccCCcEEEEEecCC
Q psy7837         206 IYISQAIR----DIPWHI--VDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       206 v~~~~~~~----~~~~~~--~~~L~~gG~lv~~~~~~  236 (299)
                      |++++++.    .....+  ..+|++||.+++..+..
T Consensus       114 If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie~~~~  150 (171)
T d1ws6a1         114 AFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             EEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred             eEEccccccCHHHHHHHHHHcCCcCCCeEEEEEecCC
Confidence            99998752    333333  34799999999876554

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.29  E-value=4.3e-12  Score=109.51  Aligned_cols=107  Identities=17%  Similarity=0.158  Sum_probs=87.0

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC----CCCCC
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY----PDAAP  202 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~  202 (299)
                      .+.+|++|||++||+|.+++.++..|+ .|+++|+++.+++.+++|++.|+   ....+++++.+|+....    ....+
T Consensus       141 ~~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~---l~~~~~~~i~~d~~~~l~~~~~~~~~  217 (317)
T d2b78a2         141 GSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANH---LDMANHQLVVMDVFDYFKYARRHHLT  217 (317)
T ss_dssp             TTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTT---CCCTTEEEEESCHHHHHHHHHHTTCC
T ss_pred             HhhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhc---ccCcceEEEEccHHHHHHHHHhhcCC
Confidence            345799999999999999999988887 59999999999999999998852   22468999999986422    23468


Q ss_pred             eeEEEecchh---------------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         203 YDVIYISQAI---------------RDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       203 fD~v~~~~~~---------------~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      ||+|+++++.               ..+...+.++|+|||.|++++.+..
T Consensus       218 fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~  267 (317)
T d2b78a2         218 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN  267 (317)
T ss_dssp             EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             CCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence            9999999873               2355678899999999999876644

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.26  E-value=2.4e-11  Score=101.87  Aligned_cols=100  Identities=24%  Similarity=0.296  Sum_probs=82.7

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      ++.+..+|||||||+|.++..+++.  +.+++++|+ +.+++.++++++..    +...++.++.+|.....+  .+||+
T Consensus        78 d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~----~~~~ri~~~~~d~~~~~p--~~~D~  150 (256)
T d1qzza2          78 DWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADA----GLADRVTVAEGDFFKPLP--VTADV  150 (256)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT----TCTTTEEEEECCTTSCCS--CCEEE
T ss_pred             CCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhc----CCcceeeeeeeecccccc--ccchh
Confidence            3456689999999999999999987  678999997 78899999988763    456789999999876443  45999


Q ss_pred             EEecchhhhH--------HHHHHHhccCCcEEEEEec
Q psy7837         206 IYISQAIRDI--------PWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       206 v~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~  234 (299)
                      |++..+++++        .+++.+.|||||++++...
T Consensus       151 v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         151 VLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence            9999998743        4578999999999998754

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.24  E-value=1e-11  Score=106.00  Aligned_cols=103  Identities=18%  Similarity=0.129  Sum_probs=81.5

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC----CCCCCee
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY----PDAAPYD  204 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD  204 (299)
                      ..++.+|||++||+|.+++.+++.|++|+++|.|+.+++.|++|++.|+   ....+++++++|+....    .....||
T Consensus       130 ~~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~---~~~~~~~~i~~D~~~~l~~~~~~~~~fD  206 (309)
T d2igta1         130 ADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAG---LEQAPIRWICEDAMKFIQREERRGSTYD  206 (309)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHT---CTTSCEEEECSCHHHHHHHHHHHTCCBS
T ss_pred             ccCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhc---ccCCcEEEEeCCHHHhHHHHhhcCCCCC
Confidence            3568899999999999999999999999999999999999999998852   12346999999987532    1236799


Q ss_pred             EEEecchh----------------hhHHHHHHHhccCCcEEEEEec
Q psy7837         205 VIYISQAI----------------RDIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       205 ~v~~~~~~----------------~~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      +|+++++.                ..+...+..+|+|||.+++.+.
T Consensus       207 ~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~  252 (309)
T d2igta1         207 IILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA  252 (309)
T ss_dssp             EEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred             EEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence            99998872                1233467789999997655543

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=6e-12  Score=105.39  Aligned_cols=109  Identities=16%  Similarity=0.118  Sum_probs=76.7

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccC------------------------
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIAL------------------------  182 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~------------------------  182 (299)
                      ...++.+|||+|||+|..+..++..+. +|+|+|+|+.+++.|++++.........                        
T Consensus        48 ~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (257)
T d2a14a1          48 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  127 (257)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence            345678999999999999888877765 5999999999999999998652110000                        


Q ss_pred             CCCe-EEEEcCCC----CCCCCCCCeeEEEecchhhhHH----------HHHHHhccCCcEEEEEecCC
Q psy7837         183 AENF-EFVCADGR----RGYPDAAPYDVIYISQAIRDIP----------WHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       183 ~~~v-~~~~~d~~----~~~~~~~~fD~v~~~~~~~~~~----------~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ...+ .....+..    ......++||+|++..+++++.          +++.++|||||.+++.....
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~  196 (257)
T d2a14a1         128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLR  196 (257)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred             hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecc
Confidence            0000 11222222    1223457899999998887652          57899999999999987654

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=1.6e-11  Score=108.01  Aligned_cols=144  Identities=15%  Similarity=0.117  Sum_probs=111.2

Q ss_pred             HHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC
Q psy7837         117 ETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG  196 (299)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  196 (299)
                      +.+++.+.......++.+|||+.||+|.+++.+++.+.+|+++|.++.+++.|++|++.     ++..|+.|+.+|....
T Consensus       198 e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~-----n~i~n~~~~~~~~~~~  272 (358)
T d1uwva2         198 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARL-----NGLQNVTFYHENLEED  272 (358)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHH-----TTCCSEEEEECCTTSC
T ss_pred             hHHHHHHHHhhccCCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHh-----cccccceeeecchhhh
Confidence            34555555566778889999999999999999999999999999999999999999998     5788999999998754


Q ss_pred             CC----CCCCeeEEEecchhhhHH---HHHHHhccCCcEEEEEecCCCCcceeeeEEeecCCceEEEEecceeccccccc
Q psy7837         197 YP----DAAPYDVIYISQAIRDIP---WHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKS  269 (299)
Q Consensus       197 ~~----~~~~fD~v~~~~~~~~~~---~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (299)
                      ..    ....+|+|+++++-..+.   ..+.+ ++|.-++++++.+......+.   ...+.++..+.+.++.++ |.+.
T Consensus       273 ~~~~~~~~~~~d~vilDPPR~G~~~~~~~l~~-~~~~~ivYVSCnp~TlaRDl~---~l~~~gy~l~~i~~~D~F-P~T~  347 (358)
T d1uwva2         273 VTKQPWAKNGFDKVLLDPARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARDSE---ALLKAGYTIARLAMLDMF-PHTG  347 (358)
T ss_dssp             CSSSGGGTTCCSEEEECCCTTCCHHHHHHHHH-HCCSEEEEEESCHHHHHHHHH---HHHHTTCEEEEEEEECCS-TTSS
T ss_pred             hhhhhhhhccCceEEeCCCCccHHHHHHHHHH-cCCCEEEEEeCCHHHHHHHHH---HHHHCCCeEeEEEEEecC-CCCc
Confidence            32    236799999998764433   33333 367788889887654333333   333456899999999999 7765


Q ss_pred             c
Q psy7837         270 L  270 (299)
Q Consensus       270 ~  270 (299)
                      -
T Consensus       348 H  348 (358)
T d1uwva2         348 H  348 (358)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.23  E-value=1e-11  Score=101.93  Aligned_cols=115  Identities=18%  Similarity=0.272  Sum_probs=93.2

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCC
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGS  133 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~  133 (299)
                      ..+++..|.. .....+|||+||++||.|.++++.++++|+++++|.++...+.|++.+.+.                  
T Consensus        47 ~g~~L~~L~~-~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~------------------  107 (227)
T d1susa1          47 EGQFLSMLLK-LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA------------------  107 (227)
T ss_dssp             HHHHHHHHHH-HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT------------------
T ss_pred             HHHHHHHHHH-hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHh------------------
Confidence            3566666654 455689999999999999999999998999999999999999999999873                  


Q ss_pred             eEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-------CCCCeeEE
Q psy7837         134 KVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-------DAAPYDVI  206 (299)
Q Consensus       134 ~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~~fD~v  206 (299)
                                                                     +...+++++.+|+....+       ..++||+|
T Consensus       108 -----------------------------------------------g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~i  140 (227)
T d1susa1         108 -----------------------------------------------GVDHKIDFREGPALPVLDEMIKDEKNHGSYDFI  140 (227)
T ss_dssp             -----------------------------------------------TCGGGEEEEESCHHHHHHHHHHCGGGTTCBSEE
T ss_pred             -----------------------------------------------ccccceeeeehHHHHHHHHHHhccccCCceeEE
Confidence                                                           455689999999864221       23679999


Q ss_pred             Eecchhhh---HHHHHHHhccCCcEEEEEec
Q psy7837         207 YISQAIRD---IPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       207 ~~~~~~~~---~~~~~~~~L~~gG~lv~~~~  234 (299)
                      |+++.-..   ..+.+.++|+|||.+++..-
T Consensus       141 FiDa~k~~y~~~~e~~~~ll~~gGiii~DNv  171 (227)
T d1susa1         141 FVDADKDNYLNYHKRLIDLVKVGGVIGYDNT  171 (227)
T ss_dssp             EECSCSTTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred             EeccchhhhHHHHHHHHhhcCCCcEEEEccC
Confidence            99986544   34678899999999999743

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3.4e-11  Score=104.52  Aligned_cols=124  Identities=15%  Similarity=0.111  Sum_probs=90.5

Q ss_pred             CcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhccc
Q psy7837          50 SPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHL  129 (299)
Q Consensus        50 ~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~  129 (299)
                      .+.....+++.+.  ++++++|||+|||+|.++..++...+ ..+++|+|+++.+++.|++...+.              
T Consensus       136 ~~~~~~~~~~~~~--l~~~~~vlD~GcG~G~~~~~~a~~~~-~~~~~Gid~s~~~~~~a~~~~~~~--------------  198 (328)
T d1nw3a_         136 SFDLVAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREF--------------  198 (328)
T ss_dssp             CHHHHHHHHHHSC--CCTTCEEEEETCTTSHHHHHHHHHCC-CSEEEEEECSHHHHHHHHHHHHHH--------------
T ss_pred             HHHHHHHHHHHcC--CCCCCEEEEcCCCCCHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHH--------------
Confidence            3445677777776  89999999999999999999988765 358999999999999998887762              


Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCC--CeeEEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAA--PYDVIY  207 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~fD~v~  207 (299)
                                                              +.+++..+   ....+++++++|+........  ..|+|+
T Consensus       199 ----------------------------------------~~~~~~~g---~~~~~i~~~~gd~~~~~~~~~~~~advi~  235 (328)
T d1nw3a_         199 ----------------------------------------RKWMKWYG---KKHAEYTLERGDFLSEEWRERIANTSVIF  235 (328)
T ss_dssp             ----------------------------------------HHHHHHHT---CCCCCEEEEECCTTSHHHHHHHHHCSEEE
T ss_pred             ----------------------------------------HHHhhhcc---ccCCceEEEECcccccccccccCcceEEE
Confidence                                                    12221110   234689999999876432222  247888


Q ss_pred             ecchhh-----hHHHHHHHhccCCcEEEEEe
Q psy7837         208 ISQAIR-----DIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       208 ~~~~~~-----~~~~~~~~~L~~gG~lv~~~  233 (299)
                      +++...     ....++.+.|||||++++..
T Consensus       236 ~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         236 VNNFAFGPEVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             ECCTTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             EcceecchHHHHHHHHHHHhCCCCcEEEEec
Confidence            866542     33468889999999998754

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.21  E-value=6.7e-11  Score=93.83  Aligned_cols=107  Identities=21%  Similarity=0.203  Sum_probs=85.4

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC----CCC
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY----PDA  200 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~  200 (299)
                      +....++.+|||++||+|.++++++++|+. |+++|.++.+++.+++|++..    ....+++++++|+....    ...
T Consensus        36 l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~----~~~~~~~i~~~D~~~~l~~~~~~~  111 (182)
T d2fhpa1          36 IGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAIT----KEPEKFEVRKMDANRALEQFYEEK  111 (182)
T ss_dssp             HCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHH----TCGGGEEEEESCHHHHHHHHHHTT
T ss_pred             HHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhh----hcccccccccccchhhhhhhcccC
Confidence            345567999999999999999999999885 999999999999999999874    34458999999987422    233


Q ss_pred             CCeeEEEecchhh-----hHHHHHH--HhccCCcEEEEEecCC
Q psy7837         201 APYDVIYISQAIR-----DIPWHIV--DQLKLGGRMLFIKGHE  236 (299)
Q Consensus       201 ~~fD~v~~~~~~~-----~~~~~~~--~~L~~gG~lv~~~~~~  236 (299)
                      .+||+|+++++..     .+.+.+.  ..|+++|.+++.....
T Consensus       112 ~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E~~~~  154 (182)
T d2fhpa1         112 LQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKT  154 (182)
T ss_dssp             CCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             CCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEEcCCC
Confidence            5799999999863     2344444  3689999999876544

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=3e-11  Score=96.11  Aligned_cols=100  Identities=17%  Similarity=0.161  Sum_probs=81.5

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-CCCCCeeEEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-PDAAPYDVIY  207 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~  207 (299)
                      ..+.+|||++||+|.++++++++|+. |+.+|.++.+++.+++|++.     ....+..++.+|+.... ....+||+|+
T Consensus        42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~-----~~~~~~~ii~~d~~~~l~~~~~~fDlIf  116 (183)
T d2fpoa1          42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLAT-----LKAGNARVVNSNAMSFLAQKGTPHNIVF  116 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHH-----TTCCSEEEECSCHHHHHSSCCCCEEEEE
T ss_pred             cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhh-----ccccceeeeeecccccccccccccCEEE
Confidence            46889999999999999999999875 99999999999999999987     46678999999977432 2346799999


Q ss_pred             ecchhh-----hHHHHHH--HhccCCcEEEEEec
Q psy7837         208 ISQAIR-----DIPWHIV--DQLKLGGRMLFIKG  234 (299)
Q Consensus       208 ~~~~~~-----~~~~~~~--~~L~~gG~lv~~~~  234 (299)
                      ++++..     .+.+.+.  .+|+++|.+++...
T Consensus       117 ~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE~~  150 (183)
T d2fpoa1         117 VDPPFRRGLLEETINLLEDNGWLADEALIYVESE  150 (183)
T ss_dssp             ECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             EcCccccchHHHHHHHHHHCCCCCCCeEEEEEec
Confidence            999864     2333443  36899999999754

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.19  E-value=4.4e-11  Score=97.41  Aligned_cols=113  Identities=14%  Similarity=0.248  Sum_probs=88.1

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCe
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSK  134 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  134 (299)
                      ..++..+....+ ..+|||+|||+|+.|.++++.+.+.|+++++|+++.+.+.+++++...                   
T Consensus        45 G~lL~~lv~~~k-pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~-------------------  104 (214)
T d2cl5a1          45 GQIMDAVIREYS-PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFA-------------------  104 (214)
T ss_dssp             HHHHHHHHHHHC-CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHH-------------------
T ss_pred             HHHHHHHHHhhC-CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHc-------------------
Confidence            556666654344 479999999999999999999988899999999999999999988773                   


Q ss_pred             EEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC------CCCCeeEEEe
Q psy7837         135 VLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP------DAAPYDVIYI  208 (299)
Q Consensus       135 vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------~~~~fD~v~~  208 (299)
                                                                    +...+++++.+|..+..+      ..++||+|++
T Consensus       105 ----------------------------------------------gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ifi  138 (214)
T d2cl5a1         105 ----------------------------------------------GLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFL  138 (214)
T ss_dssp             ----------------------------------------------TCGGGEEEEESCHHHHGGGHHHHSCCCCEEEEEE
T ss_pred             ----------------------------------------------CCCccceeeeccccccccchhhcccccccceeee
Confidence                                                          445689999999874321      2367999999


Q ss_pred             cchhhhHH-----HHHHHhccCCcEEEEEe
Q psy7837         209 SQAIRDIP-----WHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       209 ~~~~~~~~-----~~~~~~L~~gG~lv~~~  233 (299)
                      +..-....     .+..++|+|||.+++..
T Consensus       139 D~~~~~~~~~~~l~~~~~lLkpGGvIv~Dd  168 (214)
T d2cl5a1         139 DHWKDRYLPDTLLLEKCGLLRKGTVLLADN  168 (214)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEEEEEEESC
T ss_pred             cccccccccHHHHHHHhCccCCCcEEEEeC
Confidence            97654322     35567899999888754

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.16  E-value=1e-10  Score=93.53  Aligned_cols=71  Identities=25%  Similarity=0.352  Sum_probs=61.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      ..|++|||+|||+|.+++.++..|+ +|+++|+++.+++.+++|+          .+++++++|+....   ++||+|++
T Consensus        47 l~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~----------~~~~~~~~D~~~l~---~~fD~Vi~  113 (197)
T d1ne2a_          47 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC----------GGVNFMVADVSEIS---GKYDTWIM  113 (197)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC----------TTSEEEECCGGGCC---CCEEEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc----------ccccEEEEehhhcC---CcceEEEe
Confidence            4689999999999999999999985 5999999999999999874          35789999987632   67999999


Q ss_pred             cchhh
Q psy7837         209 SQAIR  213 (299)
Q Consensus       209 ~~~~~  213 (299)
                      |+++.
T Consensus       114 NPPfg  118 (197)
T d1ne2a_         114 NPPFG  118 (197)
T ss_dssp             CCCC-
T ss_pred             Ccccc
Confidence            98873

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.12  E-value=1.7e-10  Score=92.96  Aligned_cols=74  Identities=23%  Similarity=0.360  Sum_probs=64.4

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      ..|++|||+|||+|.+++.++.+|+ .|+++|+++.+++.+++|++.      ...+.+++.+|....   ..+||+|++
T Consensus        45 l~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~------~~~~~~~~~~d~~~~---~~~fD~Vi~  115 (201)
T d1wy7a1          45 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGE------FKGKFKVFIGDVSEF---NSRVDIVIM  115 (201)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGG------GTTSEEEEESCGGGC---CCCCSEEEE
T ss_pred             CCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHH------cCCCceEEECchhhh---CCcCcEEEE
Confidence            4588999999999999999999986 799999999999999999887      335788999998764   256999999


Q ss_pred             cchh
Q psy7837         209 SQAI  212 (299)
Q Consensus       209 ~~~~  212 (299)
                      ++++
T Consensus       116 nPP~  119 (201)
T d1wy7a1         116 NPPF  119 (201)
T ss_dssp             CCCC
T ss_pred             cCcc
Confidence            9986

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.12  E-value=4e-10  Score=94.48  Aligned_cols=103  Identities=20%  Similarity=0.174  Sum_probs=81.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC-CCCeeEEEe
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD-AAPYDVIYI  208 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~~  208 (299)
                      +..+++|+|||+|..+..++.. .++|+++|+|+.+++.|++|++.+    ....++.+..+|....... .++||+|++
T Consensus       110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~----~~~~~~~i~~~~~~~~~~~~~~~fDlIVs  185 (271)
T d1nv8a_         110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERH----GVSDRFFVRKGEFLEPFKEKFASIEMILS  185 (271)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHT----TCTTSEEEEESSTTGGGGGGTTTCCEEEE
T ss_pred             cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHc----CCCceeEEeecccccccccccCcccEEEE
Confidence            3568999999999999988765 678999999999999999999985    4556788888888764432 368999999


Q ss_pred             cchhh--------------------------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837         209 SQAIR--------------------------DIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       209 ~~~~~--------------------------~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      |++.-                          .+.+-+.+.|++||.+++.++...
T Consensus       186 NPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~Q  240 (271)
T d1nv8a_         186 NPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQ  240 (271)
T ss_dssp             CCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTC
T ss_pred             cccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHHH
Confidence            98731                          111235678999999999987654

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.1e-10  Score=98.30  Aligned_cols=108  Identities=20%  Similarity=0.231  Sum_probs=75.9

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHH-HcCCeEEEEeCChHHHHHHHHHHHhcCCcccC------------------------
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFA-YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIAL------------------------  182 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~------------------------  182 (299)
                      ....+.++||+|||+|.+++..+ +...+|+++|+|+.+++.+++.++........                        
T Consensus        51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T d2g72a1          51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL  130 (263)
T ss_dssp             SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred             CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence            44568899999999998876554 45668999999999999999887542100000                        


Q ss_pred             -CCCeEEEEcCCCCCC------CCCCCeeEEEecchhhhHH----------HHHHHhccCCcEEEEEecC
Q psy7837         183 -AENFEFVCADGRRGY------PDAAPYDVIYISQAIRDIP----------WHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       183 -~~~v~~~~~d~~~~~------~~~~~fD~v~~~~~~~~~~----------~~~~~~L~~gG~lv~~~~~  235 (299)
                       .........|+....      ...++||+|++..+++++.          +++.++|||||.|++....
T Consensus       131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~  200 (263)
T d2g72a1         131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGAL  200 (263)
T ss_dssp             HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEeccc
Confidence             001234455655311      2235799999999887653          4788999999999997653

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.10  E-value=5.1e-10  Score=98.93  Aligned_cols=62  Identities=18%  Similarity=0.225  Sum_probs=54.7

Q ss_pred             CcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          50 SPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        50 ~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .|.....+++.+.  +++|++|||+|||.|..+..+|...+. .+++|+|+++.+++.|+++...
T Consensus       201 ~~~~i~~Il~~l~--Lkpgd~fLDLGCG~G~~vl~aA~~~g~-~~v~GIDiS~~~i~~Ak~~~~e  262 (406)
T d1u2za_         201 LPNFLSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGC-ALSFGCEIMDDASDLTILQYEE  262 (406)
T ss_dssp             CHHHHHHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCC-SEEEEEECCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhC--CCCCCEEEeCCCCCcHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHH
Confidence            4556788888887  999999999999999999999998863 5899999999999999988876

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.02  E-value=9.3e-10  Score=87.66  Aligned_cols=116  Identities=19%  Similarity=0.228  Sum_probs=91.1

Q ss_pred             cchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccC
Q psy7837          51 PSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLV  130 (299)
Q Consensus        51 p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~  130 (299)
                      |=+...+++.|.  +++|..+||++||+|..+..+.+.. +.++++++|.++.+++.+++.+..                
T Consensus         9 pVll~evi~~l~--~~~~~~~lD~t~G~Gghs~~il~~~-~~~~vi~~D~d~~~l~~a~~~l~~----------------   69 (192)
T d1m6ya2           9 PVMVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKE----------------   69 (192)
T ss_dssp             CTTHHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGG----------------
T ss_pred             chHHHHHHHhhC--CCCCCEEEEecCCCcHHHHHHHhcC-CCCeEEEeechHHHHHHHHHhhcc----------------
Confidence            445677888887  8999999999999999999999988 468999999999999999888765                


Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC-----CCCCCCeeE
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG-----YPDAAPYDV  205 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~  205 (299)
                                                                         ...++.+++++....     ....++||.
T Consensus        70 ---------------------------------------------------~~~r~~~~~~~f~~~~~~~~~~~~~~vdg   98 (192)
T d1m6ya2          70 ---------------------------------------------------FSDRVSLFKVSYREADFLLKTLGIEKVDG   98 (192)
T ss_dssp             ---------------------------------------------------GTTTEEEEECCGGGHHHHHHHTTCSCEEE
T ss_pred             ---------------------------------------------------ccccccchhHHHhhHHHHHHHcCCCCcce
Confidence                                                               235788888876531     112367999


Q ss_pred             EEecchhh---------------hHHHHHHHhccCCcEEEEEecCC
Q psy7837         206 IYISQAIR---------------DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       206 v~~~~~~~---------------~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      |+.+..+.               ..++...++|++||++++...+.
T Consensus        99 Il~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s  144 (192)
T d1m6ya2          99 ILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS  144 (192)
T ss_dssp             EEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred             eeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence            99886542               23356788999999999887654

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.98  E-value=4.8e-09  Score=82.99  Aligned_cols=104  Identities=19%  Similarity=0.162  Sum_probs=78.5

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC---CCCCCCCeeE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR---GYPDAAPYDV  205 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~~~~fD~  205 (299)
                      ..+.+|||+.||||.++++++++|+ .|+.+|.+...++..++|++..+   .......+...|...   ......+||+
T Consensus        42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~---~~~~~~~~~~~d~~~~l~~~~~~~~fDl  118 (183)
T d2ifta1          42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLK---CSSEQAEVINQSSLDFLKQPQNQPHFDV  118 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTT---CCTTTEEEECSCHHHHTTSCCSSCCEEE
T ss_pred             cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhc---ccccccccccccccccccccccCCcccE
Confidence            4678999999999999999999998 59999999999999999998721   112346666666543   1223357999


Q ss_pred             EEecchhhh-----HHHHHH--HhccCCcEEEEEecCC
Q psy7837         206 IYISQAIRD-----IPWHIV--DQLKLGGRMLFIKGHE  236 (299)
Q Consensus       206 v~~~~~~~~-----~~~~~~--~~L~~gG~lv~~~~~~  236 (299)
                      |+++++...     +.+.+.  .+|+++|.+++.....
T Consensus       119 IFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE~~~~  156 (183)
T d2ifta1         119 VFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKD  156 (183)
T ss_dssp             EEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             EEechhHhhhhHHHHHHHHHHhCCcCCCcEEEEEecCC
Confidence            999999742     334443  4789999999976543

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=6.1e-09  Score=86.46  Aligned_cols=80  Identities=19%  Similarity=0.175  Sum_probs=65.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC------CCC
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP------DAA  201 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------~~~  201 (299)
                      .+..++||+|||+|..++.++..  +++++++|+++.+++.|++|++.+    ....++.++..+......      ..+
T Consensus        60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n----~l~~~~~~~~~~~~~~~~~~~~~~~~~  135 (250)
T d2h00a1          60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQN----NLSDLIKVVKVPQKTLLMDALKEESEI  135 (250)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT----TCTTTEEEEECCTTCSSTTTSTTCCSC
T ss_pred             cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHh----CCCcceeeeeeccHHhhhhhhhhcccC
Confidence            34569999999999999998876  899999999999999999999986    566788888876553221      236


Q ss_pred             CeeEEEecchhh
Q psy7837         202 PYDVIYISQAIR  213 (299)
Q Consensus       202 ~fD~v~~~~~~~  213 (299)
                      +||+|++|+++.
T Consensus       136 ~fD~ivsNPPY~  147 (250)
T d2h00a1         136 IYDFCMCNPPFF  147 (250)
T ss_dssp             CBSEEEECCCCC
T ss_pred             ceeEEEecCccc
Confidence            799999999863

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.86  E-value=1.3e-08  Score=83.43  Aligned_cols=89  Identities=21%  Similarity=0.169  Sum_probs=71.9

Q ss_pred             HHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC
Q psy7837         119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP  198 (299)
Q Consensus       119 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  198 (299)
                      +.+.|-....+.++.+|||||||+|.+|..+++.+..|+++|+++.+++.+++++..       ..+++++.+|+.....
T Consensus         9 i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~-------~~n~~i~~~D~l~~~~   81 (235)
T d1qama_           9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVD-------HDNFQVLNKDILQFKF   81 (235)
T ss_dssp             HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTT-------CCSEEEECCCGGGCCC
T ss_pred             HHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhc-------ccchhhhhhhhhhccc
Confidence            445566667788999999999999999999999999999999999999999987643       4699999999987543


Q ss_pred             CCCCeeEEEecchhhh
Q psy7837         199 DAAPYDVIYISQAIRD  214 (299)
Q Consensus       199 ~~~~fD~v~~~~~~~~  214 (299)
                      +......|+.+-+..-
T Consensus        82 ~~~~~~~vv~NLPYnI   97 (235)
T d1qama_          82 PKNQSYKIFGNIPYNI   97 (235)
T ss_dssp             CSSCCCEEEEECCGGG
T ss_pred             cccccceeeeeehhhh
Confidence            3333456777777643

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.81  E-value=2.4e-08  Score=85.42  Aligned_cols=109  Identities=15%  Similarity=0.160  Sum_probs=87.5

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY  144 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~  144 (299)
                      .++|++|||++||+|.-|..++..+..+|.+++.|.++.-+....+++.+                              
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r------------------------------  163 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSR------------------------------  163 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH------------------------------
T ss_pred             CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHH------------------------------
Confidence            89999999999999999999999999899999999999888888877776                              


Q ss_pred             HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhh-----------
Q psy7837         145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIR-----------  213 (299)
Q Consensus       145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~-----------  213 (299)
                                                          .+..++.....|..........||.|+++++..           
T Consensus       164 ------------------------------------~~~~~i~~~~~d~~~~~~~~~~fD~ILvDaPCSg~G~~~r~p~~  207 (313)
T d1ixka_         164 ------------------------------------LGVLNVILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPER  207 (313)
T ss_dssp             ------------------------------------HTCCSEEEESSCGGGGGGGCCCEEEEEEECCTTSTTTCC-----
T ss_pred             ------------------------------------HHhhccccccccccccccccccccEEEEccccccCCceeeccch
Confidence                                                355677777777665433346799999988742           


Q ss_pred             -----------------hHHHHHHHhccCCcEEEEEecCCCCc
Q psy7837         214 -----------------DIPWHIVDQLKLGGRMLFIKGHEDDI  239 (299)
Q Consensus       214 -----------------~~~~~~~~~L~~gG~lv~~~~~~~~~  239 (299)
                                       .+..+..+.|||||+||.++-+-...
T Consensus       208 ~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~e  250 (313)
T d1ixka_         208 KWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE  250 (313)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChH
Confidence                             22346788999999999987655444

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.2e-07  Score=80.28  Aligned_cols=108  Identities=14%  Similarity=0.130  Sum_probs=83.9

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY  144 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~  144 (299)
                      .++|++|||++||+|.-|..++..++..++++++|+++.-++..++++.+                              
T Consensus        92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r------------------------------  141 (293)
T d2b9ea1          92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLAR------------------------------  141 (293)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH------------------------------
T ss_pred             CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHh------------------------------
Confidence            79999999999999999999999998889999999998888888888777                              


Q ss_pred             HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC---CCCeeEEEecchhhh-------
Q psy7837         145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD---AAPYDVIYISQAIRD-------  214 (299)
Q Consensus       145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~v~~~~~~~~-------  214 (299)
                                                          .+..++.+...|.......   ...||.|+++++...       
T Consensus       142 ------------------------------------~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~DaPCSg~G~~~r~  185 (293)
T d2b9ea1         142 ------------------------------------AGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQ  185 (293)
T ss_dssp             ------------------------------------TTCCSEEEEECCGGGSCTTCGGGTTEEEEEECCCCCC-------
T ss_pred             ------------------------------------cCccceeeeehhhhhhcccccccceeeEEeecCcccchhhhccc
Confidence                                                4677899999887753322   257999999987320       


Q ss_pred             ----------------H-------HHHHHHhccCCcEEEEEecCCCCc
Q psy7837         215 ----------------I-------PWHIVDQLKLGGRMLFIKGHEDDI  239 (299)
Q Consensus       215 ----------------~-------~~~~~~~L~~gG~lv~~~~~~~~~  239 (299)
                                      +       ...+. .|++||.|+.++-+-...
T Consensus       186 p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~  232 (293)
T d2b9ea1         186 LEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQE  232 (293)
T ss_dssp             -----------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGG
T ss_pred             chhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChh
Confidence                            0       01223 478999999887655444

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.74  E-value=1.2e-08  Score=80.92  Aligned_cols=60  Identities=23%  Similarity=0.443  Sum_probs=51.6

Q ss_pred             CcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          50 SPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        50 ~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +..+...++..+.  +++|++|||+|||+|.++..+++..   ++|+++|+++.+++.+++++++
T Consensus        18 ~~eir~~il~~l~--~~~g~~VLDiGcGsG~~s~~lA~~~---~~V~avD~~~~~l~~a~~n~~~   77 (186)
T d1l3ia_          18 AMEVRCLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQR   77 (186)
T ss_dssp             CHHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhcC--CCCCCEEEEEECCeEcccccccccc---eEEEEecCCHHHHHHHHHHHHH
Confidence            3345567777765  8999999999999999999998753   4799999999999999999987

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=98.72  E-value=1.2e-08  Score=83.74  Aligned_cols=57  Identities=21%  Similarity=0.359  Sum_probs=49.5

Q ss_pred             hHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          53 DHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        53 ~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ....+++.+.  ++||++|||+|||+|.++..+++..   +.++|+|+++.+++.|++.+..
T Consensus         4 ~~~~l~~~~~--~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~   60 (234)
T d1xxla_           4 SLGLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQE   60 (234)
T ss_dssp             HHHHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC--CCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhcc
Confidence            3455667766  9999999999999999999999875   4699999999999999988875

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.70  E-value=3.5e-08  Score=85.12  Aligned_cols=102  Identities=15%  Similarity=0.150  Sum_probs=79.0

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc-------CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCC
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM-------GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDA  200 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~-------~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  200 (299)
                      ...++.+|+|.+||+|.+...+...       ...++|+|+++.++..|+.++..      ...+..+..+|...... .
T Consensus       114 ~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~------~~~~~~~~~~d~~~~~~-~  186 (328)
T d2f8la1         114 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADL------QRQKMTLLHQDGLANLL-V  186 (328)
T ss_dssp             TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHH------HTCCCEEEESCTTSCCC-C
T ss_pred             CCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHH------hhhhhhhhccccccccc-c
Confidence            4456789999999999999887542       23699999999999999988876      23466777888665433 3


Q ss_pred             CCeeEEEecchhh------------------------hHHHHHHHhccCCcEEEEEecCC
Q psy7837         201 APYDVIYISQAIR------------------------DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       201 ~~fD~v~~~~~~~------------------------~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      .+||+|++++++.                        .+...+.+.|++||++++.++..
T Consensus       187 ~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~  246 (328)
T d2f8la1         187 DPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  246 (328)
T ss_dssp             CCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             ccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence            6799999999852                        12457889999999998887753

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=2.7e-08  Score=82.13  Aligned_cols=61  Identities=20%  Similarity=0.315  Sum_probs=51.8

Q ss_pred             CcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          50 SPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        50 ~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .|.....+.+.+.  ++||++|||||||+|.++..+++..+  .+++|+|+++.+++.++++...
T Consensus        18 ~~~~~~~l~~~~~--l~pg~~VLDiGCG~G~~~~~la~~~~--~~v~GvD~s~~~~~~ar~~~~~   78 (245)
T d1nkva_          18 TEEKYATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEE   78 (245)
T ss_dssp             CHHHHHHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHhcC--CEEEEEecccchhhHHHHHHHH
Confidence            3445566666666  99999999999999999999988764  5899999999999999998776

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=2.3e-07  Score=74.22  Aligned_cols=111  Identities=17%  Similarity=0.180  Sum_probs=87.9

Q ss_pred             HHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC
Q psy7837         119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG  196 (299)
Q Consensus       119 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  196 (299)
                      +.+.+.....+ ++.+++|+|||.|.-++.++-.  ..+++.+|.+..-+...++....     ....|+++++..+...
T Consensus        54 i~DSl~~~~~~-~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~-----L~L~nv~v~~~R~E~~  127 (207)
T d1jsxa_          54 ILDSIVVAPYL-QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHE-----LKLENIEPVQSRVEEF  127 (207)
T ss_dssp             HHHHHHHGGGC-CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH-----TTCSSEEEEECCTTTS
T ss_pred             hcchHhhhhhh-cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHH-----cCCcceeeeccchhhh
Confidence            33444444333 5679999999999999998864  67899999999999998888877     5678999999998874


Q ss_pred             CCCCCCeeEEEecchh--hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         197 YPDAAPYDVIYISQAI--RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       197 ~~~~~~fD~v~~~~~~--~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      .. ..+||+|++.+..  ..+.+-....++++|.+++.-+..
T Consensus       128 ~~-~~~fD~V~sRA~~~~~~ll~~~~~~l~~~g~~~~~KG~~  168 (207)
T d1jsxa_         128 PS-EPPFDGVISRAFASLNDMVSWCHHLPGEQGRFYALKGQM  168 (207)
T ss_dssp             CC-CSCEEEEECSCSSSHHHHHHHHTTSEEEEEEEEEEESSC
T ss_pred             cc-ccccceehhhhhcCHHHHHHHHHHhcCCCcEEEEECCCC
Confidence            43 3679999987763  556778888999999999987654

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.66  E-value=2.7e-07  Score=75.99  Aligned_cols=91  Identities=16%  Similarity=0.151  Sum_probs=70.8

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI  206 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  206 (299)
                      .....+|||||||+|.++..+++.  +.+++..|.- ..++       ..    ....+++++.+|..+..+   ..|++
T Consensus        79 f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~-------~~----~~~~ri~~~~gd~~~~~p---~~D~~  143 (244)
T d1fp1d2          79 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLP-QVIE-------NA----PPLSGIEHVGGDMFASVP---QGDAM  143 (244)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHT-------TC----CCCTTEEEEECCTTTCCC---CEEEE
T ss_pred             ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch-hhhh-------cc----CCCCCeEEecCCcccccc---cceEE
Confidence            345689999999999999999887  6789999973 3322       11    356799999999876543   36999


Q ss_pred             EecchhhhH--------HHHHHHhccCCcEEEEEec
Q psy7837         207 YISQAIRDI--------PWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       207 ~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~  234 (299)
                      ++..+++..        .+++.+.|+|||++++...
T Consensus       144 ~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~  179 (244)
T d1fp1d2         144 ILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEF  179 (244)
T ss_dssp             EEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence            999988654        4578899999999999763

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.65  E-value=7.6e-08  Score=82.12  Aligned_cols=106  Identities=19%  Similarity=0.143  Sum_probs=81.3

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCeeEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYDVI  206 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v  206 (299)
                      ...++||.||.|.|..+..+.+.  ..+|+.+|+++.+++.+++.+...+.......+++++.+|+..... ...+||+|
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence            34689999999999999999876  3579999999999999999875421111345789999999885322 23679999


Q ss_pred             Eecchh-------------hhHHHHHHHhccCCcEEEEEecC
Q psy7837         207 YISQAI-------------RDIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       207 ~~~~~~-------------~~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      +++..-             ....+.+.+.|+|||++++....
T Consensus       156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s  197 (312)
T d1uira_         156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM  197 (312)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCC
Confidence            987521             23457899999999999997643

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=98.61  E-value=2.9e-08  Score=82.29  Aligned_cols=58  Identities=40%  Similarity=0.595  Sum_probs=51.8

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .+.+++.|....++|++|||+|||+|.++..+++. +  .+|+++|+++.+++.|+++...
T Consensus       107 T~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~-g--~~V~gvDis~~av~~A~~na~~  164 (254)
T d2nxca1         107 TRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL-G--GKALGVDIDPMVLPQAEANAKR  164 (254)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCGGGHHHHHHHHHH
T ss_pred             hhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhc-C--CEEEEEECChHHHHHHHHHHHH
Confidence            57888999888999999999999999999888764 4  3799999999999999999876

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.61  E-value=3.3e-08  Score=83.07  Aligned_cols=108  Identities=18%  Similarity=0.119  Sum_probs=82.3

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcC-CeEEEEeCChHHHHHHHHHHHhcCCc-----ccCCCCeEEEEcCCCCCCCCCCCe
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMG-AKVYAIEHVKNLCKRAMKNIRRGAPA-----IALAENFEFVCADGRRGYPDAAPY  203 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~-----~~~~~~v~~~~~d~~~~~~~~~~f  203 (299)
                      ...++||.+|+|.|..+..+.+.. .+|+.+|+++.+++.+++.+...+..     .....+++++.+|+.......++|
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y  150 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF  150 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence            457899999999999999988774 46999999999999999866432100     013468999999987543344779


Q ss_pred             eEEEecchh----------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         204 DVIYISQAI----------RDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       204 D~v~~~~~~----------~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      |+|+++..-          ....+.+.+.|+|||++++...+..
T Consensus       151 DvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~  194 (276)
T d1mjfa_         151 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVY  194 (276)
T ss_dssp             EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred             CEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcc
Confidence            999987643          2345689999999999999875543

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.60  E-value=5.3e-08  Score=79.29  Aligned_cols=62  Identities=16%  Similarity=0.173  Sum_probs=52.1

Q ss_pred             hHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          53 DHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVG-ISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        53 ~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~-~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +...+...+...++++.+|||+|||+|..+..+++... +..+++|+|+++.|++.|++.+..
T Consensus        25 ~~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~   87 (225)
T d1im8a_          25 IITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA   87 (225)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHh
Confidence            34455555566689999999999999999999998764 456999999999999999998876

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.60  E-value=2.1e-07  Score=78.45  Aligned_cols=133  Identities=20%  Similarity=0.071  Sum_probs=94.1

Q ss_pred             CceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHH
Q psy7837          92 SGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRA  169 (299)
Q Consensus        92 ~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a  169 (299)
                      +|.+-..+.++.........+.-           .. ....++||-||.|.|..+..+.+.  ..+|+.+|+++.+++.+
T Consensus        62 Dg~~q~~~~De~~YhE~l~h~pl-----------~~-~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a  129 (295)
T d1inla_          62 DGITMTTEKDEFMYHEMLAHVPM-----------FL-HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAA  129 (295)
T ss_dssp             TTEEEEETTTHHHHHHHHHHHHH-----------HH-SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHH
T ss_pred             CCEEEEecCchhhhhhhhcchhH-----------hh-CCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHH
Confidence            45566666666555544333221           11 134689999999999999999887  35799999999999999


Q ss_pred             HHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCeeEEEecchhh-----------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837         170 MKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYDVIYISQAIR-----------DIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       170 ~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~~~-----------~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      ++.+..+... ....+++++.+|+..... ..++||+|+++..-.           ...+.+.+.|+|||++++....+.
T Consensus       130 ~~~~~~~~~~-~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~  208 (295)
T d1inla_         130 RKYLKQTSCG-FDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPF  208 (295)
T ss_dssp             HHHCHHHHGG-GGCTTEEEEESCHHHHGGGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred             HHHHHhhccc-ccCCCcEEEhhhHHHHHhcCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChh
Confidence            9877542111 245799999999885332 236799999876432           344689999999999999876653

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.59  E-value=5.9e-07  Score=71.18  Aligned_cols=143  Identities=17%  Similarity=0.192  Sum_probs=79.9

Q ss_pred             cchHHHHHHHHhccCCCCCEEEEEccCCCHH----HHHHHHHhCC---CceEEEEeCCHHHHHHHHHHHHHhHHHHHHHH
Q psy7837          51 PSDHCLVLELLSGHLKYGDKVLEIGTGSGYL----TTLFGAMVGI---SGKVYTIEHIPELLEAARKRVKAKAETYIKRI  123 (299)
Q Consensus        51 p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~----~~~la~~~~~---~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~  123 (299)
                      |.....+-+.+.. -.+.-+|+++|||+|.-    ++.+.+....   .-+++|.|+++..++.|++......     .+
T Consensus         9 ~~~f~~L~~~~~~-~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~-----~~   82 (193)
T d1af7a2           9 AHHFPILAEHARR-RHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLS-----EL   82 (193)
T ss_dssp             TTHHHHHHHHHHH-SCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGG-----GG
T ss_pred             cHHHHHHHHHHhc-cCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHH-----HH
Confidence            3333444444432 13335899999999974    4444544332   2379999999999999987653310     00


Q ss_pred             hhhcccCCCCeEEEEcCCCcHHHHHHHHc----C-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC-C
Q psy7837         124 NFYGHLVYGSKVLDIGSGSGYLSALFAYM----G-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG-Y  197 (299)
Q Consensus       124 ~~~~~~~~~~~vLDiG~G~G~~~~~la~~----~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~  197 (299)
                      ...                  ......+.    + ..-......+                 .....+.+...+.... .
T Consensus        83 ~~~------------------~~~~~~~yf~~~~~~~~~~~~~~~-----------------~~~~~v~~~~~~~~~~~~  127 (193)
T d1af7a2          83 KTL------------------SPQQLQRYFMRGTGPHEGLVRVRQ-----------------ELANYVEFSSVNLLEKQY  127 (193)
T ss_dssp             TTS------------------CHHHHHHHEEECCTTSCSEEEECH-----------------HHHTTEEEEECCTTCSSC
T ss_pred             hhh------------------hHHHHhhceeecCCCccceeehHH-----------------HHHHHHHHhhhhcccccc
Confidence            000                  00000000    0 0000000000                 0123566676666543 2


Q ss_pred             CCCCCeeEEEecchhh--------hHHHHHHHhccCCcEEEEEec
Q psy7837         198 PDAAPYDVIYISQAIR--------DIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       198 ~~~~~fD~v~~~~~~~--------~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      +..++||+|+|.+++.        .+.+.+.+.|+|||.|++-..
T Consensus       128 ~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~s  172 (193)
T d1af7a2         128 NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHS  172 (193)
T ss_dssp             CCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred             CCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            3347899999999985        455689999999999887643

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.59  E-value=3.5e-09  Score=87.50  Aligned_cols=86  Identities=19%  Similarity=0.140  Sum_probs=70.0

Q ss_pred             HHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCC
Q psy7837         121 KRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDA  200 (299)
Q Consensus       121 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  200 (299)
                      +.|.......++.+|||||||+|.+|..+++.+.+|+++|+++.+++.+++++.       ...+++++++|+.....+.
T Consensus        19 ~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~-------~~~n~~ii~~D~l~~~~~~   91 (245)
T d1yuba_          19 NQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK-------LNTRVTLIHQDILQFQFPN   91 (245)
T ss_dssp             HHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT-------TCSEEEECCSCCTTTTCCC
T ss_pred             HHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhh-------hccchhhhhhhhhcccccc
Confidence            344455677889999999999999999999999999999999999888776653       2468999999998755555


Q ss_pred             CCeeEEEecchhh
Q psy7837         201 APYDVIYISQAIR  213 (299)
Q Consensus       201 ~~fD~v~~~~~~~  213 (299)
                      ..++.|+.+-+.+
T Consensus        92 ~~~~~vv~NLPY~  104 (245)
T d1yuba_          92 KQRYKIVGNIPYH  104 (245)
T ss_dssp             SSEEEEEEECCSS
T ss_pred             ceeeeEeeeeehh
Confidence            6677888887754

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=98.58  E-value=5.4e-08  Score=79.29  Aligned_cols=56  Identities=25%  Similarity=0.477  Sum_probs=49.5

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..++++.+.  ++++++|||||||+|.++..+++..   .+++++|+++.+++.|++.+..
T Consensus         4 ~~~ll~~~~--l~~~~rVLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~i~~A~~~~~~   59 (231)
T d1vl5a_           4 LAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEG   59 (231)
T ss_dssp             HHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcC--CCCcCEEEEecccCcHHHHHHHHhC---CEEEEEECCHHHHhhhhhcccc
Confidence            467778876  9999999999999999999998764   3799999999999999988876

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.57  E-value=4.5e-08  Score=77.52  Aligned_cols=55  Identities=15%  Similarity=-0.037  Sum_probs=47.7

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ...+..|.  +.||.+|||+|||+|+.+.+|++..   .+|+|+|+++.+++.+++....
T Consensus        10 ~~~~~~l~--~~~~~rvLd~GCG~G~~a~~la~~G---~~V~gvD~S~~~i~~a~~~~~~   64 (201)
T d1pjza_          10 QQYWSSLN--VVPGARVLVPLCGKSQDMSWLSGQG---YHVVGAELSEAAVERYFTERGE   64 (201)
T ss_dssp             HHHHHHHC--CCTTCEEEETTTCCSHHHHHHHHHC---CEEEEEEECHHHHHHHHHHHCS
T ss_pred             HHHHHHcC--CCCCCEEEEecCcCCHHHHHHHHcC---CceEeecccHHHHHHHHHHhcc
Confidence            44566665  8999999999999999999999863   4799999999999999988754

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.56  E-value=7.2e-08  Score=81.29  Aligned_cols=84  Identities=15%  Similarity=0.139  Sum_probs=61.4

Q ss_pred             cccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCH
Q psy7837          23 FMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP  102 (299)
Q Consensus        23 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~  102 (299)
                      |..+.+.|.+..|.+....+...|    -++...+++.+.  ++||++|||||||.|..+.++++..|  .+|+|+++++
T Consensus        24 ~Lg~~~~YS~g~~~~~~~tL~eAQ----~~k~~~~~~~l~--l~~G~~VLDiGCG~G~~a~~~a~~~g--~~v~git~s~   95 (285)
T d1kpga_          24 FLDPTQTYSCAYFERDDMTLQEAQ----IAKIDLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSK   95 (285)
T ss_dssp             TSCTTCCCSCCCCSSTTCCHHHHH----HHHHHHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCH
T ss_pred             hCCCCCcEeeEEeCCCCCCHHHHH----HHHHHHHHHHcC--CCCCCEEEEecCcchHHHHHHHhcCC--cceEEEeccH
Confidence            344445566666655443333222    123344555554  89999999999999999999999885  5999999999


Q ss_pred             HHHHHHHHHHHH
Q psy7837         103 ELLEAARKRVKA  114 (299)
Q Consensus       103 ~~~~~a~~~l~~  114 (299)
                      ..++.+++...+
T Consensus        96 ~Q~~~a~~~~~~  107 (285)
T d1kpga_          96 NQANHVQQLVAN  107 (285)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998776

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=3.8e-07  Score=76.20  Aligned_cols=90  Identities=19%  Similarity=0.174  Sum_probs=72.7

Q ss_pred             HHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC
Q psy7837         119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP  198 (299)
Q Consensus       119 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  198 (299)
                      +.+.|...+...++..|||||+|.|.+|..+++.+.+++++|+++.++...++.+...    ....+++++.+|+.....
T Consensus         9 i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~----~~~~~~~~i~~D~l~~~~   84 (278)
T d1zq9a1           9 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGT----PVASKLQVLVGDVLKTDL   84 (278)
T ss_dssp             HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTS----TTGGGEEEEESCTTTSCC
T ss_pred             HHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhh----ccccchhhhHHHHhhhhh
Confidence            3344555567788999999999999999999999999999999999999999988652    234689999999986443


Q ss_pred             CCCCeeEEEecchhhh
Q psy7837         199 DAAPYDVIYISQAIRD  214 (299)
Q Consensus       199 ~~~~fD~v~~~~~~~~  214 (299)
                      +  .++.|+.+-+..-
T Consensus        85 ~--~~~~vV~NLPY~I   98 (278)
T d1zq9a1          85 P--FFDTCVANLPYQI   98 (278)
T ss_dssp             C--CCSEEEEECCGGG
T ss_pred             h--hhhhhhcchHHHH
Confidence            2  3578888887753

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.54  E-value=9.4e-08  Score=80.81  Aligned_cols=83  Identities=16%  Similarity=0.146  Sum_probs=60.8

Q ss_pred             ccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHH
Q psy7837          24 MESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPE  103 (299)
Q Consensus        24 ~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~  103 (299)
                      +...+.|.+..|.+....+...|    -.....+++.+.  +++|++|||||||.|.++..+++..+  .+++|+++++.
T Consensus        24 Lg~~~~YS~~~~~~~~~tL~~Aq----~~k~~~~~~~l~--l~~G~~VLDiGCG~G~~~~~~a~~~g--~~v~git~s~~   95 (291)
T d1kpia_          24 LDPSMTYSCAYFERPDMTLEEAQ----YAKRKLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSEN   95 (291)
T ss_dssp             SCTTCCCSCCCCSSTTCCHHHHH----HHHHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHH
T ss_pred             cCCCCCeeeEEecCCCCCHHHHH----HHHHHHHHHhcC--CCCCCEEEEecCcchHHHHHHHHhcC--cceeeccchHH
Confidence            34344566666654433333222    123455555555  89999999999999999999998876  48999999999


Q ss_pred             HHHHHHHHHHH
Q psy7837         104 LLEAARKRVKA  114 (299)
Q Consensus       104 ~~~~a~~~l~~  114 (299)
                      .++.+++....
T Consensus        96 q~~~a~~~~~~  106 (291)
T d1kpia_          96 QYAHDKAMFDE  106 (291)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988876

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=2.5e-07  Score=77.97  Aligned_cols=49  Identities=16%  Similarity=0.207  Sum_probs=42.4

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .++|++|||+++|+|.-|..+++.. .+|.+++.|+++.-+...++++.+
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~-~~~~i~a~d~~~~R~~~l~~~~~r  148 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKR  148 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHH
T ss_pred             ccccceeEeccCccccchhhhhhhh-hhhhhhhhhcchhhhhhHhhhhhc
Confidence            8999999999999999999999864 458889999888888877777776

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.53  E-value=5.7e-07  Score=75.14  Aligned_cols=107  Identities=17%  Similarity=0.104  Sum_probs=84.0

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCeeEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYDVI  206 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v  206 (299)
                      ...++||-+|.|.|..+..+.+.  ..+++.+|+++..++.+++.+..+... ....+++++.+|+..... ..++||+|
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~-~~d~r~~i~~~D~~~~l~~~~~~yDvI  152 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGK-LDDPRVDVQVDDGFMHIAKSENQYDVI  152 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTT-TTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhccc-ccCCCeEEEechHHHHHhhcCCCCCEE
Confidence            45689999999999999999986  357999999999999999987542111 345789999999875322 23679999


Q ss_pred             Eecchh----------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         207 YISQAI----------RDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       207 ~~~~~~----------~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      +++..-          ....+.+.+.|+|||+++.....+.
T Consensus       153 i~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~  193 (274)
T d1iy9a_         153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPW  193 (274)
T ss_dssp             EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred             EEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCcc
Confidence            998642          3456789999999999999876543

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=4.9e-07  Score=75.93  Aligned_cols=107  Identities=18%  Similarity=0.067  Sum_probs=83.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCeeEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYDVI  206 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v  206 (299)
                      ...++||-+|.|.|..+..+.+.  ..+++.+|+++.+++.+++-+..+.. .....+++++.+|+..... ..++||+|
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~-~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAI-GYSSSKLTLHVGDGFEFMKQNQDAFDVI  155 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHG-GGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhcc-ccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence            45689999999999999999987  45799999999999999987753211 1345799999999875322 23679999


Q ss_pred             Eecchh----------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         207 YISQAI----------RDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       207 ~~~~~~----------~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      +++..-          ....+.+.+.|+|||.+++....+.
T Consensus       156 i~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~  196 (285)
T d2o07a1         156 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQW  196 (285)
T ss_dssp             EEECC-----------CHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             EEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchh
Confidence            998642          1344688999999999999876654

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.51  E-value=7e-07  Score=75.18  Aligned_cols=107  Identities=18%  Similarity=0.100  Sum_probs=83.6

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc-C-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCCCCeeE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM-G-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDAAPYDV  205 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~-~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~  205 (299)
                      ...++||-+|.|.|.....+.+. . .+++.+|+++.+++.+++-+..+.. .....+++++.+|+....  ...++||+
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~-~~~~~r~~i~~~Da~~~l~~~~~~~yDv  157 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAI-GYEDPRVNLVIGDGVAFLKNAAEGSYDA  157 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHG-GGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhc-cccCCCcEEEEccHHHHHhhccccCccE
Confidence            34679999999999999999987 3 4799999999999999997643211 134679999999987533  22368999


Q ss_pred             EEecchh----------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         206 IYISQAI----------RDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       206 v~~~~~~----------~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      |+++..-          ....+.+.+.|+|||++++......
T Consensus       158 Ii~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~  199 (290)
T d1xj5a_         158 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLW  199 (290)
T ss_dssp             EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred             EEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcH
Confidence            9987642          2355789999999999999887654

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.50  E-value=4.2e-07  Score=73.38  Aligned_cols=103  Identities=18%  Similarity=0.148  Sum_probs=75.2

Q ss_pred             HHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC
Q psy7837         119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR  195 (299)
Q Consensus       119 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  195 (299)
                      +.+.+..+....++.+|||.|||+|.+...+...   ...++++|+++..+.              ......++.+|...
T Consensus         7 i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~--------------~~~~~~~~~~~~~~   72 (223)
T d2ih2a1           7 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD--------------LPPWAEGILADFLL   72 (223)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC--------------CCTTEEEEESCGGG
T ss_pred             HHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh--------------hcccceeeeeehhc
Confidence            3444555666778899999999999998877654   467999999986432              33456778888765


Q ss_pred             CCCCCCCeeEEEecchhh-----------------------------------hHHHHHHHhccCCcEEEEEecCC
Q psy7837         196 GYPDAAPYDVIYISQAIR-----------------------------------DIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       196 ~~~~~~~fD~v~~~~~~~-----------------------------------~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ... ...||+++.+.+..                                   .+.....+.|++||++++..+..
T Consensus        73 ~~~-~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~  147 (223)
T d2ih2a1          73 WEP-GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT  147 (223)
T ss_dssp             CCC-SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             ccc-ccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeee
Confidence            433 36799999988741                                   12246778999999999987653

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.50  E-value=1.9e-07  Score=78.58  Aligned_cols=51  Identities=24%  Similarity=0.088  Sum_probs=45.2

Q ss_pred             HHhhhcccCCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHH
Q psy7837         122 RINFYGHLVYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       122 ~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~  172 (299)
                      .+.....+.+|.+|||||||+|.++..+++. |++|+++|+|+++++.++++
T Consensus        43 ~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~   94 (280)
T d2fk8a1          43 LNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQV   94 (280)
T ss_dssp             HHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHH
Confidence            3455557899999999999999999988876 99999999999999999886

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.49  E-value=1.5e-07  Score=76.40  Aligned_cols=46  Identities=39%  Similarity=0.495  Sum_probs=42.5

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHH
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~  172 (299)
                      ..+.++.+|||||||+|+++..+++++.+|+++|+++.+.+.++++
T Consensus        66 L~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~  111 (224)
T d1vbfa_          66 LDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKL  111 (224)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHH
T ss_pred             hhhcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999998764

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.45  E-value=2.1e-07  Score=77.24  Aligned_cols=58  Identities=24%  Similarity=0.370  Sum_probs=51.9

Q ss_pred             HHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHHHh
Q psy7837         118 TYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRR  175 (299)
Q Consensus       118 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~~~  175 (299)
                      +-...|.....+.||.+|||+|||+|+++..+++.   ..+|+++|+++++++.|++|++.
T Consensus        83 kD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~  143 (264)
T d1i9ga_          83 KDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSG  143 (264)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhh
Confidence            44556777889999999999999999999999987   46899999999999999999877

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.45  E-value=4.4e-07  Score=76.88  Aligned_cols=108  Identities=19%  Similarity=0.089  Sum_probs=83.3

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCeeEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYDVI  206 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v  206 (299)
                      ...++||-||.|.|..+..+.+..  .+|+.+|+++.+++.+++.+..+... ....+++++.+|+..... ..++||+|
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~-~~dprv~i~i~Da~~~l~~~~~~yDvI  183 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCG-FSHPKLDLFCGDGFEFLKNHKNEFDVI  183 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGG-GGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccc-cCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence            346799999999999999999874  57999999999999999987553211 345799999999885322 23679999


Q ss_pred             Eecchh----------hhHHHHHHHhccCCcEEEEEecCCCC
Q psy7837         207 YISQAI----------RDIPWHIVDQLKLGGRMLFIKGHEDD  238 (299)
Q Consensus       207 ~~~~~~----------~~~~~~~~~~L~~gG~lv~~~~~~~~  238 (299)
                      +++..-          ....+.+.+.|+|||+++........
T Consensus       184 I~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~  225 (312)
T d2b2ca1         184 ITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWL  225 (312)
T ss_dssp             EECCC-------------HHHHHHHHEEEEEEEEEECCCTTT
T ss_pred             EEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHH
Confidence            998643          23346889999999999998765543

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=2.8e-07  Score=74.91  Aligned_cols=48  Identities=48%  Similarity=0.783  Sum_probs=44.1

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHHHh
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRR  175 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~~~  175 (299)
                      .+.+|.+|||+|||+|+.+..+++.   ..+|+++|+++++++.++++++.
T Consensus        73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~  123 (224)
T d1i1na_          73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK  123 (224)
T ss_dssp             TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccc
Confidence            5688999999999999999999886   46899999999999999999877

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.42  E-value=1.6e-06  Score=71.16  Aligned_cols=89  Identities=15%  Similarity=0.254  Sum_probs=68.6

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      ....+|||||||+|.++..+++.  +.+++..|.. +.++.+           ....+++++.+|..+..+   .+|+++
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~~-----------~~~~rv~~~~gD~f~~~p---~aD~~~  143 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRP-QVVENL-----------SGSNNLTYVGGDMFTSIP---NADAVL  143 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHTTC-----------CCBTTEEEEECCTTTCCC---CCSEEE
T ss_pred             cCceEEEEecCCccHHHHHHHHhCCCCeEEEecCH-HHHHhC-----------cccCceEEEecCcccCCC---CCcEEE
Confidence            34578999999999999999887  6789999983 333221           355799999999886543   479999


Q ss_pred             ecchhhh--------HHHHHHHhccCC---cEEEEEe
Q psy7837         208 ISQAIRD--------IPWHIVDQLKLG---GRMLFIK  233 (299)
Q Consensus       208 ~~~~~~~--------~~~~~~~~L~~g---G~lv~~~  233 (299)
                      +..+++.        +.+++.+.|+||   |++++..
T Consensus       144 l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e  180 (244)
T d1fp2a2         144 LKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIID  180 (244)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             EEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEE
Confidence            9999874        345788899998   6677654

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.41  E-value=3.3e-07  Score=73.92  Aligned_cols=53  Identities=25%  Similarity=0.342  Sum_probs=45.3

Q ss_pred             HHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          59 ELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        59 ~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.+...++++.+|||+|||+|.++..+++.   ..+++|+|+++.+++.|++.+..
T Consensus        29 ~~~~~~l~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~   81 (226)
T d1ve3a1          29 PLLMKYMKKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKS   81 (226)
T ss_dssp             HHHHHSCCSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhcc
Confidence            344455789999999999999999999975   24799999999999999988876

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=98.38  E-value=3.7e-07  Score=76.02  Aligned_cols=56  Identities=29%  Similarity=0.404  Sum_probs=49.7

Q ss_pred             HHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHH
Q psy7837         118 TYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNI  173 (299)
Q Consensus       118 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~  173 (299)
                      +-...|.....+.+|.+|||+|||+|.++..+++.   +.+|+++|.++.+++.|++++
T Consensus        90 kd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~  148 (266)
T d1o54a_          90 KDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNL  148 (266)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Confidence            45556778889999999999999999999999876   468999999999999999874

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.38  E-value=4.3e-07  Score=73.18  Aligned_cols=47  Identities=32%  Similarity=0.589  Sum_probs=41.6

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~  172 (299)
                      ...+.++.+|||+|||+|+++..+++.   ...|+++|+++.+++.++++
T Consensus        70 ~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~  119 (213)
T d1dl5a1          70 WVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRN  119 (213)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHH
T ss_pred             hhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhh
Confidence            345788999999999999999999876   35799999999999999876

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.38  E-value=2.3e-07  Score=74.53  Aligned_cols=46  Identities=22%  Similarity=0.263  Sum_probs=40.8

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHH
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~  172 (299)
                      ..+.||.+|||+|||+|..+..+++.  ..+|+++|+++.+++.++++
T Consensus        52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~   99 (209)
T d1nt2a_          52 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLEL   99 (209)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHH
T ss_pred             CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHH
Confidence            36789999999999999999999986  35899999999999998764

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.36  E-value=4.6e-07  Score=73.83  Aligned_cols=46  Identities=24%  Similarity=0.336  Sum_probs=40.9

Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHH
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~  172 (299)
                      ..+.+|.+|||+|||+|+.+..+++.+  ..|+|+|+|+.+++.++++
T Consensus        70 l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~  117 (230)
T d1g8sa_          70 MPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDA  117 (230)
T ss_dssp             CCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHH
T ss_pred             CCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHH
Confidence            357899999999999999999999874  6799999999999988764

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.36  E-value=2e-06  Score=69.94  Aligned_cols=102  Identities=15%  Similarity=0.137  Sum_probs=82.3

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---CCCCCee
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---PDAAPYD  204 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD  204 (299)
                      ....+++|+|+|.|.-++.++-.  ..+++.+|.+..-+...+...+.     ....++.+++..+....   ....+||
T Consensus        69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~-----L~L~n~~i~~~R~E~~~~~~~~~~~~D  143 (239)
T d1xdza_          69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEA-----LQLENTTFCHDRAETFGQRKDVRESYD  143 (239)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH-----HTCSSEEEEESCHHHHTTCTTTTTCEE
T ss_pred             cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHH-----hCCCCcEEEeehhhhccccccccccce
Confidence            35789999999999999988754  67899999999988888887777     67789999988776321   2236799


Q ss_pred             EEEecch--hhhHHHHHHHhccCCcEEEEEecCC
Q psy7837         205 VIYISQA--IRDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       205 ~v~~~~~--~~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      +|++.++  +..+.+-....+++||.+++.-+..
T Consensus       144 ~v~sRAva~l~~ll~~~~~~l~~~g~~i~~KG~~  177 (239)
T d1xdza_         144 IVTARAVARLSVLSELCLPLVKKNGLFVALKAAS  177 (239)
T ss_dssp             EEEEECCSCHHHHHHHHGGGEEEEEEEEEEECC-
T ss_pred             EEEEhhhhCHHHHHHHHhhhcccCCEEEEECCCC
Confidence            9998775  4567788999999999999987764

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.33  E-value=1.3e-06  Score=68.31  Aligned_cols=111  Identities=19%  Similarity=0.186  Sum_probs=80.7

Q ss_pred             cchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccC
Q psy7837          51 PSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLV  130 (299)
Q Consensus        51 p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~  130 (299)
                      |=+...+++.|.  +++|..++|+++|.|..+..+.+.   .|+|+|+|.++..+..+++.                   
T Consensus         4 pVll~Evl~~l~--~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~-------------------   59 (182)
T d1wg8a2           4 PVLYQEALDLLA--VRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGL-------------------   59 (182)
T ss_dssp             CTTHHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHT-------------------
T ss_pred             chHHHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhc-------------------
Confidence            345577788887  899999999999999888877664   57899999999887766542                   


Q ss_pred             CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC-----CCCCCCeeE
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG-----YPDAAPYDV  205 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~  205 (299)
                                                                         ...++.+++++....     ....+.+|.
T Consensus        60 ---------------------------------------------------~~~~~~~~~~~f~~~~~~l~~~~~~~vdg   88 (182)
T d1wg8a2          60 ---------------------------------------------------HLPGLTVVQGNFRHLKRHLAALGVERVDG   88 (182)
T ss_dssp             ---------------------------------------------------CCTTEEEEESCGGGHHHHHHHTTCSCEEE
T ss_pred             ---------------------------------------------------cccceeEeehHHHHHHHHHHHcCCCccCE
Confidence                                                               224677777765531     112256899


Q ss_pred             EEecchhhh---------------HHHHHHHhccCCcEEEEEecCC
Q psy7837         206 IYISQAIRD---------------IPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       206 v~~~~~~~~---------------~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      |+++..+..               ..+.....|++||.+++...+.
T Consensus        89 Il~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs  134 (182)
T d1wg8a2          89 ILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS  134 (182)
T ss_dssp             EEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred             EEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence            988775421               2356788999999999887654

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=98.31  E-value=6.9e-07  Score=75.02  Aligned_cols=58  Identities=16%  Similarity=0.127  Sum_probs=47.8

Q ss_pred             HHHHHHHhc--cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSG--HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~--~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+++.|..  .+.+|.+|||||||+|.++..+++..+  .+|+++|+++.+++.+++....
T Consensus        53 ~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~i~~a~~~~~~  112 (282)
T d2o57a1          53 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQ  112 (282)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCC--cEEEEEeccchhhhhhhccccc
Confidence            344444432  378999999999999999999998765  3799999999999999988766

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=7.8e-07  Score=76.03  Aligned_cols=57  Identities=30%  Similarity=0.313  Sum_probs=50.4

Q ss_pred             HHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHHHh
Q psy7837         119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRR  175 (299)
Q Consensus       119 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~~~  175 (299)
                      -...|.....+.||.+|||+|||+|+++..+++.   ..+|+++|+++.+++.|++|++.
T Consensus        86 D~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~  145 (324)
T d2b25a1          86 DINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKH  145 (324)
T ss_dssp             HHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHH
T ss_pred             cHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHH
Confidence            3445666778899999999999999999999986   46899999999999999999987

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.30  E-value=5e-07  Score=74.39  Aligned_cols=54  Identities=28%  Similarity=0.419  Sum_probs=43.3

Q ss_pred             HHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHH
Q psy7837         120 IKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNI  173 (299)
Q Consensus       120 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~  173 (299)
                      ...|.....+.||.+|||+|||+|.++..+++.   +.+|+++|.++.+++.|++|+
T Consensus        74 ~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~  130 (250)
T d1yb2a1          74 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNL  130 (250)
T ss_dssp             -------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHH
Confidence            345666778899999999999999999999976   468999999999999999873

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.29  E-value=6.9e-07  Score=70.82  Aligned_cols=56  Identities=16%  Similarity=0.292  Sum_probs=47.8

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .+.+++.+.  ..++++|||+|||+|.++..+++...   .++++|+++.+++.+++++..
T Consensus        41 t~lLi~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~---~v~~iD~s~~~i~~a~~n~~~   96 (194)
T d1dusa_          41 TKILVENVV--VDKDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKL   96 (194)
T ss_dssp             HHHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCC--cCCCCeEEEEeecCChhHHHHHhhcc---ccceeeeccccchhHHHHHHH
Confidence            355667665  78899999999999999999987543   699999999999999998875

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.28  E-value=3.6e-06  Score=74.82  Aligned_cols=137  Identities=15%  Similarity=0.180  Sum_probs=90.4

Q ss_pred             cccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHH
Q psy7837          44 HNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRI  123 (299)
Q Consensus        44 ~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~  123 (299)
                      .|+......+...|++.+.  ..++.+|+|.+||+|.+...+.+.+.....    +.      .....+           
T Consensus       141 ~G~f~TP~~Iv~~mv~ll~--~~~~~~IlDPacGsG~fL~~a~~~~~~~~~----~~------~~~~~~-----------  197 (425)
T d2okca1         141 AGQYFTPRPLIQAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSA----SK------EKRDFL-----------  197 (425)
T ss_dssp             CGGGCCCHHHHHHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-----CC------HHHHHH-----------
T ss_pred             chhhccchhhhHhhheecc--CcccceeeccccccCccHHHHHHHHHhhcc----ch------hhhhhh-----------
Confidence            4777777778888888776  678999999999999998877765532110    00      000000           


Q ss_pred             hhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCe
Q psy7837         124 NFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPY  203 (299)
Q Consensus       124 ~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  203 (299)
                                                  ....++|+|+++.+...++-++.-.+   ....+..+...|...... ...|
T Consensus       198 ----------------------------~~~~l~g~E~~~~~~~la~~n~~l~g---~~~~~~~i~~~d~l~~~~-~~~f  245 (425)
T d2okca1         198 ----------------------------RDKALHGVDNTPLVVTLASMNLYLHG---IGTDRSPIVCEDSLEKEP-STLV  245 (425)
T ss_dssp             ----------------------------HHTTEEEEESCHHHHHHHHHHHHHTT---CCSSCCSEEECCTTTSCC-SSCE
T ss_pred             ----------------------------hhhhhhhhhccHHHHHHHHhhhhhcC---CccccceeecCchhhhhc-cccc
Confidence                                        01246677777777777766654421   122345567777665433 3679


Q ss_pred             eEEEecchhh-----------------------hHHHHHHHhccCCcEEEEEecC
Q psy7837         204 DVIYISQAIR-----------------------DIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       204 D~v~~~~~~~-----------------------~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      |+|++++++.                       .+...+...|++||++++.+++
T Consensus       246 D~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~  300 (425)
T d2okca1         246 DVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD  300 (425)
T ss_dssp             EEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             ceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEech
Confidence            9999999862                       2446889999999999988764

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=7.9e-07  Score=72.33  Aligned_cols=60  Identities=13%  Similarity=-0.074  Sum_probs=48.0

Q ss_pred             CcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          50 SPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        50 ~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .|.+...+.+.+.  +.++.+|||+|||+|..+.+|++...   +|+|+|+++.+++.+++....
T Consensus        30 ~~~l~~~~~~~l~--~~~~~rvLd~GCG~G~~a~~LA~~G~---~V~gvD~S~~ai~~a~~~~~~   89 (229)
T d2bzga1          30 HQLLKKHLDTFLK--GKSGLRVFFPLCGKAVEMKWFADRGH---SVVGVEISELGIQEFFTEQNL   89 (229)
T ss_dssp             CHHHHHHHHHHHT--TCCSCEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhhc
Confidence            4555554445554  78899999999999999999998633   699999999999988887653

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.24  E-value=8.1e-07  Score=72.96  Aligned_cols=59  Identities=17%  Similarity=0.249  Sum_probs=47.6

Q ss_pred             hHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          53 DHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        53 ~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ....+.+.+...-.++.+|||+|||+|.++..+++..   .+++|+|.++.|++.|++....
T Consensus        23 ~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g---~~v~GvD~S~~ml~~A~~~~~~   81 (246)
T d1y8ca_          23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRS   81 (246)
T ss_dssp             HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhC---CccEeeccchhhhhhccccccc
Confidence            3455556665545567899999999999999998864   3699999999999999988765

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.24  E-value=3.1e-06  Score=66.05  Aligned_cols=96  Identities=17%  Similarity=0.122  Sum_probs=72.3

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-----
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-----  197 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-----  197 (299)
                      ..-+.++.+|||+||+.|.++..+.+.   ...++++|..+-                ....++.++++|.....     
T Consensus        17 ~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----------------~~i~~~~~~~~d~~~~~~~~~~   80 (180)
T d1ej0a_          17 DKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----------------DPIVGVDFLQGDFRDELVMKAL   80 (180)
T ss_dssp             HCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----------------CCCTTEEEEESCTTSHHHHHHH
T ss_pred             hCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----------------cccCCceEeecccccchhhhhh
Confidence            334578999999999999999988765   357999998652                34578899999987421     


Q ss_pred             ---CCCCCeeEEEecchhh-----------------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837         198 ---PDAAPYDVIYISQAIR-----------------DIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       198 ---~~~~~fD~v~~~~~~~-----------------~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                         ....++|+|++++...                 ....-+.+.|++||.+++-.....
T Consensus        81 ~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~  140 (180)
T d1ej0a_          81 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE  140 (180)
T ss_dssp             HHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred             hhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCc
Confidence               1236799999998742                 112356789999999999886543

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.23  E-value=1.3e-06  Score=76.63  Aligned_cols=108  Identities=19%  Similarity=0.217  Sum_probs=73.6

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHc-C-CeEEEEeCChHHHHHHHHHHHhcCCcc----cCCCCeEE-EEcCCCCCCC
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYM-G-AKVYAIEHVKNLCKRAMKNIRRGAPAI----ALAENFEF-VCADGRRGYP  198 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~-~-~~v~~~D~~~~~~~~a~~~~~~~~~~~----~~~~~v~~-~~~d~~~~~~  198 (299)
                      ...+.+++++||||||+|.++..+|.. + .+++|+|+++.+++.|+++.+......    .......+ ..++......
T Consensus       211 ~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~  290 (406)
T d1u2za_         211 QCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNR  290 (406)
T ss_dssp             HTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHH
T ss_pred             HhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccc
Confidence            346789999999999999999999876 5 479999999999999998876410000    01122333 2333322110


Q ss_pred             ---CCCCeeEEEecchh-----hhHHHHHHHhccCCcEEEEEe
Q psy7837         199 ---DAAPYDVIYISQAI-----RDIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       199 ---~~~~fD~v~~~~~~-----~~~~~~~~~~L~~gG~lv~~~  233 (299)
                         .-..+|+|+++...     .....++.+.|||||++++..
T Consensus       291 ~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         291 VAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             HHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             cccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence               01347889887543     345568999999999998753

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=7.1e-07  Score=73.54  Aligned_cols=88  Identities=14%  Similarity=0.023  Sum_probs=66.4

Q ss_pred             HHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC
Q psy7837         120 IKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD  199 (299)
Q Consensus       120 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  199 (299)
                      .+.|.......++..|||||||+|.+|..+++.+.+|+++|+++.+++..+++...       ..+++++.+|+......
T Consensus        10 ~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~-------~~~~~ii~~D~l~~~~~   82 (252)
T d1qyra_          10 IDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFL-------GPKLTIYQQDAMTFNFG   82 (252)
T ss_dssp             HHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTT-------GGGEEEECSCGGGCCHH
T ss_pred             HHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhh-------ccchhHHhhhhhhhccc
Confidence            33444555677899999999999999999999999999999999999999875432       36899999999863221


Q ss_pred             C-----CCeeEEEecchhhh
Q psy7837         200 A-----APYDVIYISQAIRD  214 (299)
Q Consensus       200 ~-----~~fD~v~~~~~~~~  214 (299)
                      .     +.--.|+.+-+..-
T Consensus        83 ~~~~~~~~~~~vvgNlPY~I  102 (252)
T d1qyra_          83 ELAEKMGQPLRVFGNLPYNI  102 (252)
T ss_dssp             HHHHHHTSCEEEEEECCTTT
T ss_pred             ccccccCCCeEEEecchHHH
Confidence            0     12235667766543

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.22  E-value=1.3e-06  Score=70.32  Aligned_cols=47  Identities=34%  Similarity=0.610  Sum_probs=42.6

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHH
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~  172 (299)
                      ...+.++.+|||||||+|+.+..+++. +.+|+++|.++.+++.++++
T Consensus        73 ~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~  120 (215)
T d1jg1a_          73 IANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRN  120 (215)
T ss_dssp             HHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHH
T ss_pred             hhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHH
Confidence            346788999999999999999999987 77899999999999999886

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.22  E-value=1.7e-05  Score=64.78  Aligned_cols=89  Identities=13%  Similarity=0.161  Sum_probs=67.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      ....+|||||||+|.++..+++.  +.+++..|.-+.. +       ..    ....+++++.+|.....+.   .|.++
T Consensus        80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi-~-------~~----~~~~r~~~~~~d~~~~~P~---ad~~~  144 (243)
T d1kyza2          80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVI-E-------DA----PSYPGVEHVGGDMFVSIPK---ADAVF  144 (243)
T ss_dssp             SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTT-T-------TC----CCCTTEEEEECCTTTCCCC---CSCEE
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhh-h-------hc----ccCCceEEecccccccCCC---cceEE
Confidence            34578999999999999999887  6789999986531 1       11    3457899999998775443   46667


Q ss_pred             ecchhh--------hHHHHHHHhccCCcEEEEEe
Q psy7837         208 ISQAIR--------DIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       208 ~~~~~~--------~~~~~~~~~L~~gG~lv~~~  233 (299)
                      +...++        .+.+++.+.|+|||++++..
T Consensus       145 l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d  178 (243)
T d1kyza2         145 MKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAE  178 (243)
T ss_dssp             CSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred             EEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEE
Confidence            766664        35578999999999988864

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.21  E-value=3.7e-06  Score=68.21  Aligned_cols=112  Identities=17%  Similarity=0.138  Sum_probs=73.8

Q ss_pred             CcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhh
Q psy7837          50 SPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMV---GISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFY  126 (299)
Q Consensus        50 ~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~---~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~  126 (299)
                      .|.....+ ..|...++| .+|||+|++.|..+.+++..+   +.+++++++|+++.....     ..            
T Consensus        65 ~p~d~~~~-~eli~~~KP-k~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~-----~~------------  125 (232)
T d2bm8a1          65 DPDTQAVY-HDMLWELRP-RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQI-----PA------------  125 (232)
T ss_dssp             CHHHHHHH-HHHHHHHCC-SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCC-----CG------------
T ss_pred             CHHHHHHH-HHHHHHhCC-CEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhh-----hh------------
Confidence            56666444 444434664 689999999999998887654   567888888876532110     00            


Q ss_pred             cccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC----CCCCC
Q psy7837         127 GHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY----PDAAP  202 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~  202 (299)
                                                                            ....+++++.+|.....    .....
T Consensus       126 ------------------------------------------------------~~~~~I~~i~gDs~~~~~~~~l~~~~  151 (232)
T d2bm8a1         126 ------------------------------------------------------SDMENITLHQGDCSDLTTFEHLREMA  151 (232)
T ss_dssp             ------------------------------------------------------GGCTTEEEEECCSSCSGGGGGGSSSC
T ss_pred             ------------------------------------------------------ccccceeeeecccccHHHHHHHHhcC
Confidence                                                                  23568999999976421    12346


Q ss_pred             eeEEEecchhh--hHHH--HHHHhccCCcEEEEEec
Q psy7837         203 YDVIYISQAIR--DIPW--HIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       203 fD~v~~~~~~~--~~~~--~~~~~L~~gG~lv~~~~  234 (299)
                      +|.|+.+..-.  +...  .+..+|++||++++...
T Consensus       152 ~dlIfID~~H~~~~v~~~~~~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         152 HPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             SSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             CCEEEEcCCcchHHHHHHHHHhcccCcCCEEEEEcC
Confidence            89999887632  1111  35679999999999754

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.20  E-value=1.2e-06  Score=71.38  Aligned_cols=51  Identities=27%  Similarity=0.372  Sum_probs=42.8

Q ss_pred             HHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Q psy7837          59 ELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV  112 (299)
Q Consensus        59 ~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l  112 (299)
                      ..+...+.++.+|||+|||+|.++..+++..   .+++|+|+++.+++.++++.
T Consensus        34 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~l~~a~~~~   84 (246)
T d2avna1          34 SFLEEYLKNPCRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLEVAREKG   84 (246)
T ss_dssp             HHHHHHCCSCCEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHHT
T ss_pred             HHHHHhcCCCCEEEEECCCCchhcccccccc---eEEEEeeccccccccccccc
Confidence            3344457788999999999999999998763   37999999999999998754

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.15  E-value=3.2e-06  Score=68.29  Aligned_cols=48  Identities=44%  Similarity=0.792  Sum_probs=42.9

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc----C----CeEEEEeCChHHHHHHHHHHHh
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM----G----AKVYAIEHVKNLCKRAMKNIRR  175 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~----~----~~v~~~D~~~~~~~~a~~~~~~  175 (299)
                      ++.++.+|||||||+|+++..+++.    |    .+|+++|.++++++.+++++..
T Consensus        77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~  132 (223)
T d1r18a_          77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNT  132 (223)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhh
Confidence            5688999999999999999999876    2    4799999999999999999765

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=9.1e-07  Score=72.01  Aligned_cols=48  Identities=19%  Similarity=0.215  Sum_probs=41.8

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+|.+|||||||+|.++..+++..+  .+++++|+++.+++.+++....
T Consensus        51 ~~~g~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~   98 (229)
T d1zx0a1          51 SSKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPR   98 (229)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGG
T ss_pred             ccCCCeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhh
Confidence            46789999999999999999987532  4799999999999999988765

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.15  E-value=2.8e-06  Score=67.26  Aligned_cols=53  Identities=21%  Similarity=0.255  Sum_probs=43.0

Q ss_pred             HHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          57 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        57 ~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +++.+. .+.+| +|||+|||+|..+..+++...   +++++|+++.+++.+++....
T Consensus        22 ~~~~~~-~~~~g-rvLDiGcG~G~~~~~la~~g~---~v~gvD~s~~~l~~a~~~~~~   74 (198)
T d2i6ga1          22 VLAAAK-VVAPG-RTLDLGCGNGRNSLYLAANGY---DVTAWDKNPASMANLERIKAA   74 (198)
T ss_dssp             HHHHHT-TSCSC-EEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHcc-cCCCC-cEEEECCCCCHHHHHHHHHhh---hhccccCcHHHHHHHHHHhhh
Confidence            444443 24555 999999999999999998743   699999999999999888765

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.14  E-value=1.6e-06  Score=70.32  Aligned_cols=45  Identities=20%  Similarity=0.308  Sum_probs=40.7

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~  172 (299)
                      .+.||.+|||+|||+|.++..+++.   ...|+++|+++.+++.++++
T Consensus        70 ~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~  117 (227)
T d1g8aa_          70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPI  117 (227)
T ss_dssp             CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHH
T ss_pred             ccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHH
Confidence            5789999999999999999999987   46899999999999988764

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.14  E-value=2.7e-06  Score=69.69  Aligned_cols=47  Identities=23%  Similarity=0.310  Sum_probs=41.5

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..++.+|||+|||+|..+..+++..   .+++|+|+++.|++.|++++..
T Consensus        39 ~~~~~~iLDiGcGtG~~~~~l~~~~---~~v~gvD~s~~mi~~a~~~~~~   85 (251)
T d1wzna1          39 KREVRRVLDLACGTGIPTLELAERG---YEVVGLDLHEEMLRVARRKAKE   85 (251)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCCccchhhcccc---eEEEEEeecccccccccccccc
Confidence            4667799999999999999999854   3699999999999999998775

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.13  E-value=1.8e-06  Score=72.43  Aligned_cols=50  Identities=22%  Similarity=0.325  Sum_probs=45.7

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +..+.+|||+|||+|.++..+++..+..++++|+|+++.+++.++++...
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~   74 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL   74 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHS
T ss_pred             cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccc
Confidence            56778999999999999999999887778999999999999999988875

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.08  E-value=3.3e-06  Score=66.72  Aligned_cols=68  Identities=19%  Similarity=0.231  Sum_probs=47.7

Q ss_pred             ccccCCcchHHHHHHHHhc-cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          45 NAFMESPSDHCLVLELLSG-HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        45 ~~~~~~p~~~~~~~~~l~~-~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .|....+.+.+.++..+.. .=..|.+|||+|||+|.++..++....  .+|+++|+++..++.+++++..
T Consensus        25 eQy~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~ga--~~V~~vDid~~a~~~ar~N~~~   93 (197)
T d1ne2a_          25 EQYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRNCGG   93 (197)
T ss_dssp             --CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHHCTT
T ss_pred             ccCCCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcCC--CcccccccCHHHHHHHHHcccc
Confidence            3444555565555533331 123689999999999999877665432  4799999999999999887654

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.07  E-value=3.2e-06  Score=69.61  Aligned_cols=49  Identities=27%  Similarity=0.372  Sum_probs=41.9

Q ss_pred             cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .++++.+|||+|||+|..+..+++.-  .++++|+|+++.+++.|+++...
T Consensus        21 ~~~~~~~VLDlGCG~G~~~~~~~~~~--~~~v~GiD~S~~~l~~A~~r~~~   69 (252)
T d1ri5a_          21 YTKRGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARN   69 (252)
T ss_dssp             HCCTTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHT
T ss_pred             hCCCcCEEEEecccCcHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHh
Confidence            47899999999999999988887753  24799999999999999887654

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.07  E-value=5.6e-06  Score=65.78  Aligned_cols=68  Identities=16%  Similarity=0.132  Sum_probs=49.3

Q ss_pred             ccccCCcchHHHHHHHHhc-cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          45 NAFMESPSDHCLVLELLSG-HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        45 ~~~~~~p~~~~~~~~~l~~-~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +|....+.+...++..... .-..|.+|||+|||+|.++..++...  ..+|+++|+++..++.+++++..
T Consensus        23 ~qy~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g--~~~v~~vdi~~~~~~~a~~N~~~   91 (201)
T d1wy7a1          23 EQYRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLG--AKEVICVEVDKEAVDVLIENLGE   91 (201)
T ss_dssp             TCCCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHTGG
T ss_pred             ccCCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcC--CCEEEEEcCcHHHHHHHHHHHHH
Confidence            3444455555555543321 12468899999999999998876543  24899999999999999998765

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.06  E-value=2.9e-06  Score=69.16  Aligned_cols=61  Identities=21%  Similarity=0.254  Sum_probs=49.5

Q ss_pred             CCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          49 ESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        49 ~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .++.+...+++.+.  ++++++|||||||+|.+|..|++..   .+++++|+++.+++..++....
T Consensus         5 ~d~~i~~~iv~~~~--~~~~d~VlEIGpG~G~LT~~Ll~~~---~~v~avE~D~~l~~~l~~~~~~   65 (235)
T d1qama_           5 TSKHNIDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVD   65 (235)
T ss_dssp             CCHHHHHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTT
T ss_pred             CCHHHHHHHHHhcC--CCCCCeEEEECCCchHHHHHHHhCc---CceEEEeeccchHHHHHHHhhc
Confidence            34555566666655  7899999999999999999999864   3699999999999988776543

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.05  E-value=3.6e-06  Score=70.86  Aligned_cols=55  Identities=20%  Similarity=0.208  Sum_probs=45.2

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+.+.+.  .+++.+|||+|||+|..+..|++..   -.|+|+|+++.|++.|++....
T Consensus        46 ~~l~~~l~--~~~~~~vLD~GcG~G~~~~~la~~g---~~v~gvD~S~~ml~~A~~~~~~  100 (292)
T d1xvaa_          46 AWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEEG---FSVTSVDASDKMLKYALKERWN  100 (292)
T ss_dssp             HHHHHHHH--HTTCCEEEESSCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHhh--hcCCCEEEEecCCCcHHHHHHHHcC---CeeeeccCchHHHHHHHHHHHh
Confidence            44455554  5678899999999999999999863   2799999999999999988765

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=5.7e-06  Score=70.87  Aligned_cols=53  Identities=21%  Similarity=0.162  Sum_probs=45.4

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHHHHHHc-CC-eEEEEeCChHHHHHHHHHHHh
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSALFAYM-GA-KVYAIEHVKNLCKRAMKNIRR  175 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~-~~-~v~~~D~~~~~~~~a~~~~~~  175 (299)
                      +.....+.++.+|||+|||+|.++..+++. ++ .++|+|+++.+++.|+++.+.
T Consensus       143 ~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~  197 (328)
T d1nw3a_         143 MIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE  197 (328)
T ss_dssp             HHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH
Confidence            334456789999999999999999988865 44 699999999999999998765

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.02  E-value=1.1e-05  Score=62.35  Aligned_cols=58  Identities=16%  Similarity=0.139  Sum_probs=49.0

Q ss_pred             HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .+.++..|...+..|.+|||+|||+|.++..++...   .+++++|.++..++.+++++..
T Consensus        28 ~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~g---a~vv~vD~~~~a~~~~~~N~~~   85 (171)
T d1ws6a1          28 RKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEG---WEAVLVEKDPEAVRLLKENVRR   85 (171)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTT---CEEEEECCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccccCCCeEEEeccccchhhhhhhhcc---chhhhcccCHHHHhhhhHHHHh
Confidence            356667777778899999999999999998776653   3688999999999999999886

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.01  E-value=2.7e-06  Score=69.48  Aligned_cols=118  Identities=18%  Similarity=0.242  Sum_probs=79.9

Q ss_pred             eEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHH
Q psy7837          94 KVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNI  173 (299)
Q Consensus        94 ~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~  173 (299)
                      .-+.+|+......+.++.....-+.+.+.+..  ......+|||.-||.|.-+..++..|++|+++|.++.+....+.++
T Consensus        53 ~~~~vdF~~g~~~~R~~~~~~~~~~l~kA~gl--~~~~~~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l  130 (250)
T d2oyra1          53 GGIFVDFVGGAMAHRRKFGGGRGEAVAKAVGI--KGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGL  130 (250)
T ss_dssp             CEECCCSSSHHHHHHHHHSCGGGSHHHHHTTC--BTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHH
T ss_pred             CCEEEECCCcHHHHhhhccCcchhHHHHHhcC--CCCCCCEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHH
Confidence            36667777766665554332222334443421  1122348999999999999999999999999999999887777766


Q ss_pred             HhcCCccc----CCCCeEEEEcCCCCCCCC-CCCeeEEEecchhh
Q psy7837         174 RRGAPAIA----LAENFEFVCADGRRGYPD-AAPYDVIYISQAIR  213 (299)
Q Consensus       174 ~~~~~~~~----~~~~v~~~~~d~~~~~~~-~~~fD~v~~~~~~~  213 (299)
                      ++...+..    ...+++++.+|..+.... ..+||+|++++++.
T Consensus       131 ~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvIYlDPMFp  175 (250)
T d2oyra1         131 ARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMFP  175 (250)
T ss_dssp             HHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEEECCCCC
T ss_pred             HHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEEEECCCCc
Confidence            54210000    134899999997653322 35699999999874

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=97.99  E-value=5.6e-06  Score=66.86  Aligned_cols=55  Identities=18%  Similarity=0.259  Sum_probs=43.2

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      ..+++.+... .++.+|||+|||+|.++..+++...   +|+|+|+++.+++.+++...
T Consensus         9 ~~~~~~~~~~-~~~~~VLDiGcG~G~~~~~l~~~g~---~v~giD~s~~~i~~a~~~~~   63 (225)
T d2p7ia1           9 PFMVRAFTPF-FRPGNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLK   63 (225)
T ss_dssp             HHHHHHHGGG-CCSSCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSC
T ss_pred             HHHHHHhhhh-CCCCcEEEEeCCCcHHHHHHHHcCC---eEEEEeCcHHHhhhhhcccc
Confidence            4455555543 4566899999999999999987643   59999999999999987653

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=8.4e-06  Score=67.73  Aligned_cols=59  Identities=24%  Similarity=0.329  Sum_probs=45.8

Q ss_pred             HHHHHHHHhcc-CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          54 HCLVLELLSGH-LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        54 ~~~~~~~l~~~-~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      ...+.+.+... ..++.+|||+|||+|.++..+++.. ++..++|+|+++.+++.+++...
T Consensus        70 ~~~~~~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~~~  129 (268)
T d1p91a_          70 RDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRYP  129 (268)
T ss_dssp             HHHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhcccc
Confidence            34444444332 3678899999999999999999876 45789999999999998876543

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=3.6e-06  Score=67.86  Aligned_cols=48  Identities=17%  Similarity=0.143  Sum_probs=40.8

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..++.+|||+|||+|.++..++...+  .+++++|+++.+++.|++++..
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~ak~~~~~  105 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGE  105 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGG
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCHHHhhcccccccc
Confidence            45678999999999999988765543  3799999999999999998765

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=2.5e-06  Score=70.16  Aligned_cols=56  Identities=16%  Similarity=0.143  Sum_probs=43.9

Q ss_pred             HHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          57 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        57 ~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.+.+.....+|.+|||+|||+|.++..++...+  .+|+|+|+++.+++.+++.+..
T Consensus        41 ~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~--~~v~giD~S~~~i~~a~~~~~~   96 (257)
T d2a14a1          41 LHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKK   96 (257)
T ss_dssp             HHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHT
T ss_pred             HHHHhcccCCCCCEEEEECCCCCHhHHHHhcccc--CcEEEecCCHHHHHHHHHHHhh
Confidence            3344444557788999999999998877765432  2799999999999999998764

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=1.4e-05  Score=72.87  Aligned_cols=117  Identities=15%  Similarity=0.041  Sum_probs=78.1

Q ss_pred             HHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc--------------------CCeEEEEeCChHHHHHHHHHHHhcCC
Q psy7837         119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM--------------------GAKVYAIEHVKNLCKRAMKNIRRGAP  178 (299)
Q Consensus       119 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~--------------------~~~v~~~D~~~~~~~~a~~~~~~~~~  178 (299)
                      +.+.+..+....++.+|+|..||+|.+...+.+.                    ...++|+|+++.+...++-++--.+.
T Consensus       152 Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~  231 (524)
T d2ar0a1         152 LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI  231 (524)
T ss_dssp             HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC
T ss_pred             hhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcc
Confidence            3344444556677889999999999999876543                    12589999999999999988764211


Q ss_pred             cccCCCCeEEEEcCCCCC-CCCCCCeeEEEecchhh--------------------hHHHHHHHhccCCcEEEEEecC
Q psy7837         179 AIALAENFEFVCADGRRG-YPDAAPYDVIYISQAIR--------------------DIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       179 ~~~~~~~v~~~~~d~~~~-~~~~~~fD~v~~~~~~~--------------------~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      .......-.+..++.... .....+||+|++++++.                    .+...+.+.|++||++.+.++.
T Consensus       232 ~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~  309 (524)
T d2ar0a1         232 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD  309 (524)
T ss_dssp             CCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             cccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEeh
Confidence            000011122333333211 11235799999999862                    2457889999999999998764

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=7.9e-06  Score=67.09  Aligned_cols=60  Identities=18%  Similarity=0.227  Sum_probs=50.8

Q ss_pred             cCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Q psy7837          48 MESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV  112 (299)
Q Consensus        48 ~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l  112 (299)
                      +.++.....+++.+.  +.+++.|||||||.|.+|..|++..   .+++++|+++.+++..++..
T Consensus         4 L~d~~~~~~Iv~~~~--~~~~d~vlEIGpG~G~LT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~   63 (252)
T d1qyra_           4 LNDQFVIDSIVSAIN--PQKGQAMVEIGPGLAALTEPVGERL---DQLTVIELDRDLAARLQTHP   63 (252)
T ss_dssp             ECCHHHHHHHHHHHC--CCTTCCEEEECCTTTTTHHHHHTTC---SCEEEECCCHHHHHHHHTCT
T ss_pred             cCCHHHHHHHHHhcC--CCCCCEEEEECCCchHHHHHHHccC---CceEEEEeccchhHHHHHHh
Confidence            346677788888886  8899999999999999999999864   36999999999999877644

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=1.1e-05  Score=67.00  Aligned_cols=43  Identities=21%  Similarity=0.432  Sum_probs=38.4

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHH
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~  172 (299)
                      ..+.+|||+|||+|..++.++..  ...|+++|+|+.+++.|++|
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~N  151 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRN  151 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHH
T ss_pred             ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHH
Confidence            34678999999999999999876  57899999999999999987

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.83  E-value=2.2e-05  Score=68.08  Aligned_cols=103  Identities=15%  Similarity=0.046  Sum_probs=76.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHH-cCC-eEEEEeCChHHHHHHHHHHHhcCCcc----------cCCCCeEEEEcCCCCCCC
Q psy7837         131 YGSKVLDIGSGSGYLSALFAY-MGA-KVYAIEHVKNLCKRAMKNIRRGAPAI----------ALAENFEFVCADGRRGYP  198 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~-~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~----------~~~~~v~~~~~d~~~~~~  198 (299)
                      ++.+|||..||+|..++.++. .+. .|++.|+|+..++.+++|++.|+-+.          .....+.+.+.|+.....
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            578999999999999997665 454 69999999999999999998852110          012345666677653221


Q ss_pred             -CCCCeeEEEecchh--hhHHHHHHHhccCCcEEEEEe
Q psy7837         199 -DAAPYDVIYISQAI--RDIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       199 -~~~~fD~v~~~~~~--~~~~~~~~~~L~~gG~lv~~~  233 (299)
                       ....||+|.+++--  ....+.+.+.++.||.|.+..
T Consensus       125 ~~~~~fDvIDiDPfGs~~pfldsAi~a~~~~Gll~vTa  162 (375)
T d2dula1         125 ERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTA  162 (375)
T ss_dssp             HSTTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhcCcCCcccCCCCCCcHHHHHHHHHHhccCCEEEEEe
Confidence             23569999998732  345678888899999999975

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=97.82  E-value=1.4e-05  Score=65.72  Aligned_cols=47  Identities=19%  Similarity=0.300  Sum_probs=40.1

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .++.+|||+|||+|.++..++...+.  .|.++|.++.+++.|++.+..
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~~--~v~~vD~s~~~l~~a~~~~~~  138 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVKHMLEEAKRELAG  138 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCS--EEEEEESCHHHHHHHHHHTTT
T ss_pred             CCCCeEEEecccCChhhHHHHhhcCc--eEEEEcCCHHHHHhhhccccc
Confidence            56779999999999999988776543  799999999999999877643

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.81  E-value=1.6e-05  Score=65.65  Aligned_cols=66  Identities=20%  Similarity=0.167  Sum_probs=50.8

Q ss_pred             cccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          46 AFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        46 ~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+-++.....- .++...+++|++|||+|||+|+++..+++..  .++|+++|+++..++.+++++..
T Consensus        87 ~~~f~~~~~~er-~ri~~~~~~g~~VlD~~aG~G~~~l~~a~~~--~~~V~avd~n~~a~~~~~~N~~~  152 (260)
T d2frna1          87 KIMFSPANVKER-VRMAKVAKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHL  152 (260)
T ss_dssp             TSCCCGGGHHHH-HHHHHHCCTTCEEEETTCTTTTTHHHHHHHT--CCEEEEECCCHHHHHHHHHHHHH
T ss_pred             cccEecCCHHHH-HHHHhhcCCccEEEECcceEcHHHHHHHHhC--CcEEEEecCCHHHHHHHHHHHHH
Confidence            344455543222 2344447899999999999999999998763  35899999999999999999876

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.73  E-value=5.3e-05  Score=57.12  Aligned_cols=57  Identities=14%  Similarity=0.109  Sum_probs=45.8

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.++..|... -.|.+|||+|||+|.++..++....  .+++++|.++..++.+++++..
T Consensus         3 e~~fn~l~~~-~~g~~vlDl~~GtG~~~iea~~rga--~~v~~ve~~~~a~~~~~~n~~~   59 (152)
T d2esra1           3 GAIFNMIGPY-FNGGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIM   59 (152)
T ss_dssp             HHHHHHHCSC-CCSCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhh-CCCCeEEEcCCccCHHHHHHHHhCc--ceeeeehhchhhhhhhhhhhhh
Confidence            3455566543 3689999999999999987766533  3899999999999999999876

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=3e-05  Score=64.38  Aligned_cols=62  Identities=29%  Similarity=0.401  Sum_probs=52.7

Q ss_pred             cCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          48 MESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        48 ~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.++.+...+++.+.  +.+++.|||||+|.|.+|..|++..   .+++++|+++.+++..++.+..
T Consensus         4 L~d~~i~~kIv~~~~--~~~~d~VlEIGPG~G~LT~~Ll~~~---~~v~aiE~D~~l~~~L~~~~~~   65 (278)
T d1zq9a1           4 LKNPLIINSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQG   65 (278)
T ss_dssp             ECCHHHHHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHhC--CCCCCEEEEECCCchHHHHHHHhcC---CcEEEEEEccchhHHHHHHHhh
Confidence            346677788888775  8899999999999999999999874   3799999999999988877654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.71  E-value=0.00012  Score=55.90  Aligned_cols=99  Identities=19%  Similarity=0.148  Sum_probs=70.1

Q ss_pred             hcccCCCCeEEEEcCC-CcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC------
Q psy7837         126 YGHLVYGSKVLDIGSG-SGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY------  197 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G-~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~------  197 (299)
                      ...++++.+||-+||| .|.++..+++. |++|+++|.++..++.+++.-         . ...+ ..+.....      
T Consensus        21 ~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~g---------a-~~~~-~~~~~~~~~~~~~~   89 (170)
T d1e3ja2          21 RAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCG---------A-DVTL-VVDPAKEEESSIIE   89 (170)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT---------C-SEEE-ECCTTTSCHHHHHH
T ss_pred             HhCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcC---------C-cEEE-eccccccccchhhh
Confidence            3467899999999988 56666666654 899999999999999888741         1 1222 11211100      


Q ss_pred             ----CCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecC
Q psy7837         198 ----PDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       198 ----~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                          .....+|+|+-...-....+...+.++++|++++.-.+
T Consensus        90 ~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~  131 (170)
T d1e3ja2          90 RIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMG  131 (170)
T ss_dssp             HHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCC
T ss_pred             hhhcccccCCceeeecCCChHHHHHHHHHHhcCCceEEEecC
Confidence                01246899987777777788899999999999987544

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=2.1e-05  Score=65.02  Aligned_cols=58  Identities=9%  Similarity=0.082  Sum_probs=45.0

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+.+.+......|.+|||+|||+|..+...+.....  +++++|+++.+++.+++.+..
T Consensus        42 ~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~--~v~~~D~S~~~i~~~~~~~~~   99 (263)
T d2g72a1          42 RCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFE--DITMTDFLEVNRQELGRWLQE   99 (263)
T ss_dssp             HHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCS--EEEEECSCHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCC--eEEEEeCCHHHHHHHHHHHhc
Confidence            4444555555678899999999999887766555433  799999999999999987754

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.68  E-value=1.9e-05  Score=61.53  Aligned_cols=101  Identities=20%  Similarity=0.149  Sum_probs=70.6

Q ss_pred             HHhhhcccCCCCeEEEEcCC-CcHHHHHHHHc-CC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC---
Q psy7837         122 RINFYGHLVYGSKVLDIGSG-SGYLSALFAYM-GA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR---  195 (299)
Q Consensus       122 ~~~~~~~~~~~~~vLDiG~G-~G~~~~~la~~-~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~---  195 (299)
                      .+.....+.+|.+||-+|+| .|.+...+++. |+ +|+++|.+++.++.+++.         +.. . ++...-..   
T Consensus        19 al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l---------Ga~-~-vi~~~~~~~~~   87 (182)
T d1vj0a2          19 AFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI---------GAD-L-TLNRRETSVEE   87 (182)
T ss_dssp             HHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT---------TCS-E-EEETTTSCHHH
T ss_pred             HHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc---------cce-E-EEeccccchHH
Confidence            34455677899999999998 46666677665 76 699999999999988764         111 1 11111000   


Q ss_pred             ------CCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEe
Q psy7837         196 ------GYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       196 ------~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~  233 (299)
                            .......+|+|+-........+...+.|++||++++.-
T Consensus        88 ~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G  131 (182)
T d1vj0a2          88 RRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAG  131 (182)
T ss_dssp             HHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECC
T ss_pred             HHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCCCEEEEEe
Confidence                  01123469999977666777888999999999998764

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.65  E-value=4.3e-06  Score=68.47  Aligned_cols=64  Identities=30%  Similarity=0.368  Sum_probs=53.6

Q ss_pred             cccc-cCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Q psy7837          44 HNAF-MESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV  112 (299)
Q Consensus        44 ~~~~-~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l  112 (299)
                      .||+ +.++.+...+++.+.  +.+++.|||||||+|.+|..|++..   .+++++|+++.+++..++.+
T Consensus         7 ~GQnFL~d~~ii~kIv~~~~--~~~~d~VLEIGpG~G~LT~~L~~~~---~~v~aIE~D~~l~~~l~~~~   71 (245)
T d1yuba_           7 YSQNFLTSEKVLNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKL   71 (245)
T ss_dssp             SCCCBCCCTTTHHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTT
T ss_pred             CCCcccCCHHHHHHHHHhcC--CCCCCeEEEECCCccHHHHHHHhhc---CceeEeeecccchhhhhhhh
Confidence            4665 467888899998887  8899999999999999999999874   37999999998887665544

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.62  E-value=7.2e-05  Score=59.23  Aligned_cols=47  Identities=21%  Similarity=0.227  Sum_probs=41.8

Q ss_pred             CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          67 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        67 ~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ....|||||||+|.++..+|+.. ++..++|+|+++.++..+.+...+
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~-p~~~~iGiD~~~~~i~~a~~~~~~   75 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKD   75 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHH
T ss_pred             CCceEEEEEecCcHHHHHHHHhC-CCCcEEEeecchHHHHHHHHHHHH
Confidence            45678999999999999999985 568999999999999999988876

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.61  E-value=2.2e-05  Score=60.76  Aligned_cols=98  Identities=18%  Similarity=0.189  Sum_probs=71.3

Q ss_pred             hcccCCCCeEEEEcCCC-cHHHHHHHHc-CC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC------C
Q psy7837         126 YGHLVYGSKVLDIGSGS-GYLSALFAYM-GA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR------G  196 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~-G~~~~~la~~-~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~------~  196 (299)
                      .+.+.++.+||-+|||. |..+..+++. |+ +|+++|.++.-++.+++.         +..  .++.-.-..      .
T Consensus        22 ~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l---------Ga~--~~i~~~~~~~~~~v~~   90 (174)
T d1jqba2          22 LADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY---------GAT--DILNYKNGHIEDQVMK   90 (174)
T ss_dssp             HTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH---------TCS--EEECGGGSCHHHHHHH
T ss_pred             HhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh---------Ccc--ccccccchhHHHHHHH
Confidence            46789999999999984 7788888876 76 699999999998888764         211  112111110      1


Q ss_pred             CCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEec
Q psy7837         197 YPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       197 ~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      ......+|+|+-........+...+.++|+|++++.-.
T Consensus        91 ~t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~  128 (174)
T d1jqba2          91 LTNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINY  128 (174)
T ss_dssp             HTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCC
T ss_pred             HhhccCcceEEEccCCHHHHHHHHHHHhcCCEEEEEee
Confidence            11235699999877777888899999999999999643

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=5.8e-05  Score=63.84  Aligned_cols=44  Identities=23%  Similarity=0.321  Sum_probs=36.3

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK  110 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~  110 (299)
                      +.+|.+|||+|||+|.++..+++...  .+|+++|.++.+...++.
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga--~~V~aid~s~~~~~a~~~   76 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEILYQAMDI   76 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESSTHHHHHHHH
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcCC--CEEEEEeCHHHHHHHHHH
Confidence            57899999999999999999988643  489999999987654433

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=97.60  E-value=2.9e-05  Score=61.51  Aligned_cols=40  Identities=30%  Similarity=0.377  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~  111 (299)
                      +.++.+|||+|||+|.++..++       +++|+|+++.+++.+++.
T Consensus        34 ~~~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~~   73 (208)
T d1vlma_          34 LLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKR   73 (208)
T ss_dssp             HCCSSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHHT
T ss_pred             hCCCCeEEEECCCCcccccccc-------eEEEEeCChhhccccccc
Confidence            5677899999999999987774       378999999999988763

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.60  E-value=5.5e-05  Score=64.50  Aligned_cols=47  Identities=23%  Similarity=0.364  Sum_probs=37.7

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.+|.+|||+|||+|.++..+++...  .+|+++|.++ +++.+++....
T Consensus        36 ~~~~~~VLDlGcGtG~ls~~aa~~Ga--~~V~avd~s~-~~~~a~~~~~~   82 (328)
T d1g6q1_          36 LFKDKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMSS-IIEMAKELVEL   82 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTCC--SEEEEEESST-HHHHHHHHHHH
T ss_pred             cCCcCEEEEeCCCCCHHHHHHHHhCC--CEEEEEeCCH-HHHHHHHHHHH
Confidence            56899999999999999998887643  3899999997 55666666554

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=3.6e-05  Score=64.03  Aligned_cols=49  Identities=22%  Similarity=0.220  Sum_probs=39.8

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhC-----CCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVG-----ISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~-----~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ++..+|||||||+|.++..++..+.     ....++++|+++.+++.+++.+.+
T Consensus        39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~   92 (280)
T d1jqea_          39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAK   92 (280)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhh
Confidence            4445899999999999998877542     234689999999999999998765

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.54  E-value=0.00016  Score=58.19  Aligned_cols=110  Identities=10%  Similarity=-0.057  Sum_probs=68.0

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      .+.++.+|+|+|||.|.++..++.+.  ..|.++++--..-+.. ...+.     ....-+.+...+..... .....|+
T Consensus        63 ~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P-~~~~~-----~~~ni~~~~~~~dv~~l-~~~~~D~  135 (257)
T d2p41a1          63 LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEP-IPMST-----YGWNLVRLQSGVDVFFI-PPERCDT  135 (257)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCS-----TTGGGEEEECSCCTTTS-CCCCCSE
T ss_pred             CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCC-ccccc-----cccccccchhhhhHHhc-CCCcCCE
Confidence            56788899999999999999998774  5688888731110000 00000     11123444444433222 3367999


Q ss_pred             EEecchh------------hhHHHHHHHhccCCcEEEEEecCCCCcceeee
Q psy7837         206 IYISQAI------------RDIPWHIVDQLKLGGRMLFIKGHEDDIMTLEL  244 (299)
Q Consensus       206 v~~~~~~------------~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~  244 (299)
                      |+|+..-            ..+.+-+.+.|++||.+++-+..+.....+..
T Consensus       136 vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~  186 (257)
T d2p41a1         136 LLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEK  186 (257)
T ss_dssp             EEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHH
T ss_pred             EEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHH
Confidence            9999742            12335567899999999998876654444433

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.52  E-value=0.00015  Score=61.68  Aligned_cols=57  Identities=23%  Similarity=0.244  Sum_probs=47.6

Q ss_pred             HHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          56 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        56 ~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..-..+...+++|.+|||++||+|.++..++...  ..+|+++|+++..++.+++++..
T Consensus       134 ~~r~~~~~~~~~g~~VLDl~~g~G~~si~~a~~g--a~~V~~vD~s~~al~~a~~N~~~  190 (324)
T d2as0a2         134 ENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAG--ADEVIGIDKSPRAIETAKENAKL  190 (324)
T ss_dssp             HHHHHHGGGCCTTCEEEETTCTTTHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHH
T ss_pred             hHHHHHHhhcCCCCeeecccCcccchhhhhhhcC--CcEEEeecCCHHHHHHHHHHHHH
Confidence            3344455557899999999999999999888653  24899999999999999999976

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=97.50  E-value=9.9e-05  Score=60.40  Aligned_cols=56  Identities=16%  Similarity=0.162  Sum_probs=45.0

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+++.+.  +.+..+|||||||+|.++..+++.. +..+++++|+ +.+++.+++.+..
T Consensus        70 ~~~~~~~d--~~~~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~-~~~~~~a~~~~~~  125 (253)
T d1tw3a2          70 DAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKD  125 (253)
T ss_dssp             HHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHH
T ss_pred             HHHHhhcC--CccCCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccC-HHHHHHHHHHHHH
Confidence            44455554  6778899999999999999999887 4578899998 5678888888776

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.00016  Score=58.99  Aligned_cols=47  Identities=23%  Similarity=0.273  Sum_probs=42.1

Q ss_pred             CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          67 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        67 ~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +..++||+|||+|..+..++.... +-+++++|+++..++.|++++..
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~-~~~~~~~Di~~~al~~A~~N~~~  107 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQ  107 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHH
T ss_pred             ccceEEEeCCCchHHHHHHHHhCC-CccccceecCHHHHHHHHHHHHH
Confidence            345899999999999999998873 57899999999999999999987

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.43  E-value=0.00012  Score=57.22  Aligned_cols=45  Identities=18%  Similarity=0.162  Sum_probs=40.4

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHH
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~  172 (299)
                      ...++..++|++||+|..+..+++.  +.+|+++|.++.+++.++++
T Consensus        20 ~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~   66 (192)
T d1m6ya2          20 KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEK   66 (192)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHh
Confidence            5678999999999999999988775  67899999999999999875

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=97.42  E-value=0.00016  Score=59.64  Aligned_cols=71  Identities=23%  Similarity=0.290  Sum_probs=50.8

Q ss_pred             ccccccccCCcchHHHHHHHHhccC--CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          41 NIGHNAFMESPSDHCLVLELLSGHL--KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        41 ~~~~~~~~~~p~~~~~~~~~l~~~~--~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .+..+..++.|.. +.+++.+.+..  .+..+|+|+|||+|..+..+++.  ++.+++++|+++..++.|+++...
T Consensus        83 ~v~~~vlIPRpeT-E~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~--~~~~v~a~Dis~~Al~~A~~Na~~  155 (271)
T d1nv8a_          83 LVEEGVFVPRPET-EELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAER  155 (271)
T ss_dssp             ECCTTSCCCCTTH-HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHH
T ss_pred             EEecCccCchhhh-hhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhc--ccceeeechhhhhHHHHHHHHHHH
Confidence            3444444455544 34444433212  33458999999999999988864  467999999999999999999987

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.42  E-value=0.00012  Score=58.38  Aligned_cols=45  Identities=22%  Similarity=0.307  Sum_probs=39.7

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~  172 (299)
                      .....++|||+|||+|+.++.+++.   +.+++++|.++...+.++++
T Consensus        53 ~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~  100 (214)
T d2cl5a1          53 REYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQM  100 (214)
T ss_dssp             HHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHH
T ss_pred             HhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHH
Confidence            3356789999999999999999875   67899999999999999876

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.42  E-value=0.00018  Score=56.83  Aligned_cols=47  Identities=17%  Similarity=0.145  Sum_probs=41.0

Q ss_pred             CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          67 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        67 ~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ....|||||||+|.++..+|+.. ++..++|+|+++.++..+.+...+
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~   77 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLE   77 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEeccCCHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhh
Confidence            34579999999999999999986 457899999999999998887766

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.00014  Score=58.09  Aligned_cols=50  Identities=20%  Similarity=0.193  Sum_probs=42.9

Q ss_pred             hhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHH
Q psy7837         124 NFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNI  173 (299)
Q Consensus       124 ~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~  173 (299)
                      ..+......++|||+||++|+.++.++..   +.+++++|.+++..+.|++++
T Consensus        52 ~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~  104 (219)
T d2avda1          52 ANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLW  104 (219)
T ss_dssp             HHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHH
T ss_pred             HHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHH
Confidence            34445567899999999999999999875   678999999999999998873

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.39  E-value=3.7e-05  Score=58.95  Aligned_cols=96  Identities=24%  Similarity=0.306  Sum_probs=64.9

Q ss_pred             cccCCCCeEEEEcCC-CcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEc-CCCC-CCCCCCC
Q psy7837         127 GHLVYGSKVLDIGSG-SGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA-DGRR-GYPDAAP  202 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G-~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-d~~~-~~~~~~~  202 (299)
                      ..+.++.+||-+|+| .|.++..+++. |++|+++|.+++.++.+++.         +.+  .++.. +... .....+.
T Consensus        23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l---------Ga~--~~i~~~~~~~~~~~~~~~   91 (168)
T d1piwa2          23 NGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM---------GAD--HYIATLEEGDWGEKYFDT   91 (168)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH---------TCS--EEEEGGGTSCHHHHSCSC
T ss_pred             hCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc---------CCc--EEeeccchHHHHHhhhcc
Confidence            467899999999998 66777777654 99999999999988888764         222  12221 1111 0011256


Q ss_pred             eeEEEecchh--hhHHHHHHHhccCCcEEEEEe
Q psy7837         203 YDVIYISQAI--RDIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       203 fD~v~~~~~~--~~~~~~~~~~L~~gG~lv~~~  233 (299)
                      +|.++.....  ....+...+.|+++|++++.-
T Consensus        92 ~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2          92 FDLIVVCASSLTDIDFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             EEEEEECCSCSTTCCTTTGGGGEEEEEEEEECC
T ss_pred             cceEEEEecCCccchHHHHHHHhhccceEEEec
Confidence            9988764332  223456889999999998864

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.35  E-value=0.00011  Score=56.53  Aligned_cols=102  Identities=18%  Similarity=0.092  Sum_probs=72.9

Q ss_pred             HhhhcccCCCCeEEEEcCCC-cHHHHHHHHc-CC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--
Q psy7837         123 INFYGHLVYGSKVLDIGSGS-GYLSALFAYM-GA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--  197 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~-G~~~~~la~~-~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--  197 (299)
                      +...+.+.+|.+||-+|||. |.++..+++. |+ .|+.+|.++.-++.+++.         +...  ++...-.+..  
T Consensus        20 ~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~---------Ga~~--~i~~~~~~~~~~   88 (174)
T d1e3ia2          20 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL---------GATD--CLNPRELDKPVQ   88 (174)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT---------TCSE--EECGGGCSSCHH
T ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh---------CCCc--ccCCccchhhhh
Confidence            34466789999999999995 7888888776 76 599999999988888774         2211  1111111100  


Q ss_pred             -----CCCCCeeEEEecchhhhHHHHHHHhccCC-cEEEEEecC
Q psy7837         198 -----PDAAPYDVIYISQAIRDIPWHIVDQLKLG-GRMLFIKGH  235 (299)
Q Consensus       198 -----~~~~~fD~v~~~~~~~~~~~~~~~~L~~g-G~lv~~~~~  235 (299)
                           .....+|+++-........+...+.+++| |++++.-..
T Consensus        89 ~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~  132 (174)
T d1e3ia2          89 DVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAK  132 (174)
T ss_dssp             HHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred             hhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCC
Confidence                 11257999998888888889999999996 999887543

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.34  E-value=0.00013  Score=61.82  Aligned_cols=46  Identities=33%  Similarity=0.322  Sum_probs=36.1

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      +.+|.+|||+|||+|.++.++++..+  .+|+++|.++.+ ..+++...
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga--~~V~avd~s~~~-~~a~~~~~   76 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKAGA--RKVIGIECSSIS-DYAVKIVK   76 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTTH-HHHHHHHH
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHhCC--CEEEEEcCcHHH-hhhhhHHH
Confidence            56899999999999999998888543  379999999765 45554443

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=97.33  E-value=0.00024  Score=58.15  Aligned_cols=56  Identities=18%  Similarity=0.146  Sum_probs=45.0

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+++.+.  +.+..+|||||||+|.++..+++.. ++.+++++|+ +.+++.+++.+..
T Consensus        71 ~~~~~~~d--~~~~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~  126 (256)
T d1qzza2          71 EAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFAD  126 (256)
T ss_dssp             HHHHHTSC--CTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHH
T ss_pred             HHHHhcCC--CccCCEEEEECCCCCHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhh
Confidence            34444443  5677899999999999999999987 3578999997 7788888888876

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=9.3e-05  Score=56.90  Aligned_cols=96  Identities=22%  Similarity=0.231  Sum_probs=66.9

Q ss_pred             HhhhcccCCCCeEEEEcC-C-CcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC---
Q psy7837         123 INFYGHLVYGSKVLDIGS-G-SGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG---  196 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~-G-~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---  196 (299)
                      +....++.++.+||-.|+ | .|..+..+++. |++|++++.+++..+.+++.         +.+.  ++  |..+.   
T Consensus        20 l~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~---------Ga~~--vi--~~~~~~~~   86 (174)
T d1yb5a2          20 LIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN---------GAHE--VF--NHREVNYI   86 (174)
T ss_dssp             HHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---------TCSE--EE--ETTSTTHH
T ss_pred             HHHHhCCCCCCEEEEEeccccccccccccccccCccccccccccccccccccc---------Cccc--cc--ccccccHH
Confidence            344567889999999996 3 56666666655 89999999998877777653         2222  12  22111   


Q ss_pred             -----CCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEE
Q psy7837         197 -----YPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFI  232 (299)
Q Consensus       197 -----~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~  232 (299)
                           ......+|+|+.... ....+...+.|+++|+++..
T Consensus        87 ~~i~~~t~~~g~d~v~d~~g-~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          87 DKIKKYVGEKGIDIIIEMLA-NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             HHHHHHHCTTCEEEEEESCH-HHHHHHHHHHEEEEEEEEEC
T ss_pred             HHhhhhhccCCceEEeeccc-HHHHHHHHhccCCCCEEEEE
Confidence                 112367999987665 45667788999999999986

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00043  Score=52.84  Aligned_cols=99  Identities=18%  Similarity=0.143  Sum_probs=69.2

Q ss_pred             hcccCCCCeEEEEcCC-CcHHHHHHHHc-CC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC------
Q psy7837         126 YGHLVYGSKVLDIGSG-SGYLSALFAYM-GA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG------  196 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G-~G~~~~~la~~-~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~------  196 (299)
                      ...+.++.+|+-+|+| .|..+..+++. |+ +|+++|.++..++.+++.         +.+.+  +..+-...      
T Consensus        21 ~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~---------Ga~~~--~~~~~~~~~~~~~~   89 (171)
T d1pl8a2          21 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI---------GADLV--LQISKESPQEIARK   89 (171)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---------TCSEE--EECSSCCHHHHHHH
T ss_pred             HhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh---------CCccc--cccccccccccccc
Confidence            3467899999999998 44555555554 77 699999999999988764         22211  11111110      


Q ss_pred             --CCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecC
Q psy7837         197 --YPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       197 --~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                        ......+|+|+-........+...+.+++||++++.-..
T Consensus        90 ~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~  130 (171)
T d1pl8a2          90 VEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLG  130 (171)
T ss_dssp             HHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCC
T ss_pred             ccccCCCCceEEEeccCCchhHHHHHHHhcCCCEEEEEecC
Confidence              001246899998888888889999999999999987543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.27  E-value=0.00086  Score=51.11  Aligned_cols=107  Identities=17%  Similarity=0.150  Sum_probs=67.4

Q ss_pred             HHHhccCCCCCEEEEEccCC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEE
Q psy7837          59 ELLSGHLKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLD  137 (299)
Q Consensus        59 ~~l~~~~~~g~~vldiG~G~-G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLD  137 (299)
                      ......++||++||-+|+|. |.++..+++..+. .+++++|.++.-.+.+++.                          
T Consensus        24 ~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~-~~vv~~~~~~~k~~~~~~~--------------------------   76 (172)
T d1h2ba2          24 KKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTP-ATVIALDVKEEKLKLAERL--------------------------   76 (172)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCC-CEEEEEESSHHHHHHHHHT--------------------------
T ss_pred             HHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcC-cccccccchhHHHHHHhhc--------------------------
Confidence            33333479999999999987 5666677766653 4677788877655544432                          


Q ss_pred             EcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHH
Q psy7837         138 IGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPW  217 (299)
Q Consensus       138 iG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~  217 (299)
                                     |+. ..++.+++..+...+.                         .....+|+|+-...-....+
T Consensus        77 ---------------ga~-~~i~~~~~~~~~~~~~-------------------------~~~~g~d~vid~~g~~~~~~  115 (172)
T d1h2ba2          77 ---------------GAD-HVVDARRDPVKQVMEL-------------------------TRGRGVNVAMDFVGSQATVD  115 (172)
T ss_dssp             ---------------TCS-EEEETTSCHHHHHHHH-------------------------TTTCCEEEEEESSCCHHHHH
T ss_pred             ---------------ccc-eeecCcccHHHHHHHh-------------------------hCCCCceEEEEecCcchHHH
Confidence                           111 1223322222221111                         11245999998777777888


Q ss_pred             HHHHhccCCcEEEEEe
Q psy7837         218 HIVDQLKLGGRMLFIK  233 (299)
Q Consensus       218 ~~~~~L~~gG~lv~~~  233 (299)
                      ...+.|+++|++++.-
T Consensus       116 ~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2         116 YTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             HGGGGEEEEEEEEECC
T ss_pred             HHHHHHhCCCEEEEEe
Confidence            8999999999999864

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.25  E-value=0.0001  Score=56.73  Aligned_cols=99  Identities=18%  Similarity=0.132  Sum_probs=68.7

Q ss_pred             hhhcccCCCCeEEEEcCC-CcHHHHHHHHc-CC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---
Q psy7837         124 NFYGHLVYGSKVLDIGSG-SGYLSALFAYM-GA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---  197 (299)
Q Consensus       124 ~~~~~~~~~~~vLDiG~G-~G~~~~~la~~-~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---  197 (299)
                      ....++.++.+||-+||| .|..+..+++. |+ .++.+|.++..++.+++.         +..  .++..+..+..   
T Consensus        21 ~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~---------Ga~--~~i~~~~~~~~~~i   89 (174)
T d1f8fa2          21 INALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL---------GAT--HVINSKTQDPVAAI   89 (174)
T ss_dssp             HTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH---------TCS--EEEETTTSCHHHHH
T ss_pred             HHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc---------CCe--EEEeCCCcCHHHHH
Confidence            344568899999999997 44455566654 66 478889999998888764         221  22322211100   


Q ss_pred             --CCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEe
Q psy7837         198 --PDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       198 --~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~  233 (299)
                        ...+.+|+|+-........+...+.++++|++++.-
T Consensus        90 ~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2          90 KEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVG  127 (174)
T ss_dssp             HHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECC
T ss_pred             HHHcCCCCcEEEEcCCcHHHHHHHHhcccCceEEEEEe
Confidence              112579999987777788889999999999998864

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=0.00024  Score=54.22  Aligned_cols=98  Identities=21%  Similarity=0.136  Sum_probs=68.6

Q ss_pred             hcccCCCCeEEEEcCC-CcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCC-CCCCCCCC
Q psy7837         126 YGHLVYGSKVLDIGSG-SGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGR-RGYPDAAP  202 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G-~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~  202 (299)
                      ...+.+|.+||-+|+| .|.++.++++. |++++++|.+++..+.+++.         +.+.  ++...-. ........
T Consensus        25 ~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~l---------Gad~--~i~~~~~~~~~~~~~~   93 (168)
T d1uufa2          25 HWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL---------GADE--VVNSRNADEMAAHLKS   93 (168)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH---------TCSE--EEETTCHHHHHTTTTC
T ss_pred             HhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhcc---------CCcE--EEECchhhHHHHhcCC
Confidence            3578899999999987 56666677664 88988999998888777654         2221  2221111 11112257


Q ss_pred             eeEEEecchhhhHHHHHHHhccCCcEEEEEec
Q psy7837         203 YDVIYISQAIRDIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       203 fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~  234 (299)
                      +|.++-........+...++++++|++++.-.
T Consensus        94 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2          94 FDFILNTVAAPHNLDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             EEEEEECCSSCCCHHHHHTTEEEEEEEEECCC
T ss_pred             CceeeeeeecchhHHHHHHHHhcCCEEEEecc
Confidence            99998777666667788999999999998743

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.09  E-value=0.0012  Score=51.02  Aligned_cols=59  Identities=17%  Similarity=0.121  Sum_probs=47.7

Q ss_pred             hHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          53 DHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        53 ~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.+.++..|.. ...|.+|||+.||+|.++..++....  .+++.+|.+...++.+++++..
T Consensus        28 vrealFn~l~~-~~~~~~vLDlfaGsG~~g~ea~srGa--~~v~~ve~~~~a~~~~~~N~~~   86 (182)
T d2fhpa1          28 VKESIFNMIGP-YFDGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAI   86 (182)
T ss_dssp             HHHHHHHHHCS-CCSSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-hcCCCEEEEcccccccccceeeecch--hHHHHHHHHHHHHHHHHHHhhh
Confidence            34555565543 56799999999999999997776543  3899999999999999999876

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.08  E-value=0.0001  Score=56.18  Aligned_cols=96  Identities=19%  Similarity=0.106  Sum_probs=64.0

Q ss_pred             cccCCCCeEEEEcCC-CcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC----CCC
Q psy7837         127 GHLVYGSKVLDIGSG-SGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY----PDA  200 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G-~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~  200 (299)
                      ..++++.+||-+|+| .|..+..+++. |.+|+++|.++..++.+++.         +.+  .++..+.....    ...
T Consensus        23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~---------Ga~--~~i~~~~~~~~~~~~~~~   91 (166)
T d1llua2          23 TNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL---------GAS--LTVNARQEDPVEAIQRDI   91 (166)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT---------TCS--EEEETTTSCHHHHHHHHH
T ss_pred             hCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhcc---------Ccc--ccccccchhHHHHHHHhh
Confidence            567899999999987 55666666654 88999999999999888764         221  12222211100    011


Q ss_pred             CCeeEEEecchhhhHHHHHHHhccCCcEEEEEe
Q psy7837         201 APYDVIYISQAIRDIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       201 ~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~  233 (299)
                      ..+|.++.........+...+.|+++|++++.-
T Consensus        92 ~g~~~~i~~~~~~~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2          92 GGAHGVLVTAVSNSAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             SSEEEEEECCSCHHHHHHHHTTEEEEEEEEECC
T ss_pred             cCCcccccccccchHHHHHHHHhcCCcEEEEEE
Confidence            335555555555666778889999999998864

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.06  E-value=0.00052  Score=54.38  Aligned_cols=53  Identities=23%  Similarity=0.284  Sum_probs=43.2

Q ss_pred             cchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHH
Q psy7837          51 PSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELL  105 (299)
Q Consensus        51 p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~  105 (299)
                      +.+...|++.+.  ..++++|||.|||+|.+...+.+.......++++|+++...
T Consensus         5 ~~i~~~m~~l~~--~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~   57 (223)
T d2ih2a1           5 PEVVDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL   57 (223)
T ss_dssp             HHHHHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTC
T ss_pred             HHHHHHHHHhcC--CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHH
Confidence            345566666655  77899999999999999988888888778899999987654

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=97.05  E-value=0.00062  Score=57.46  Aligned_cols=47  Identities=15%  Similarity=0.195  Sum_probs=41.4

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+|.+|||++||+|.++..++...   .+|+++|+++..++.+++++..
T Consensus       143 ~~~g~rVLDl~~gtG~~s~~~a~g~---~~V~~vD~s~~al~~a~~n~~~  189 (318)
T d1wxxa2         143 RFRGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARL  189 (318)
T ss_dssp             GCCEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHH
T ss_pred             HhCCCeeeccCCCCcHHHHHHHhcC---CcEEeecchHHHHHHHHHHHHH
Confidence            4579999999999999999887543   4799999999999999999876

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.04  E-value=0.0018  Score=50.44  Aligned_cols=96  Identities=16%  Similarity=0.065  Sum_probs=66.0

Q ss_pred             hcccCCCCeEEEEcCCC-cHHHHHHHHc-CC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC------
Q psy7837         126 YGHLVYGSKVLDIGSGS-GYLSALFAYM-GA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG------  196 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~-G~~~~~la~~-~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~------  196 (299)
                      .+.+.+|.+||.+|||. |..+..+++. ++ .|+++|.++..++.+++.         +.   ..+.-.....      
T Consensus        20 ~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~---------Ga---~~~~~~~~~~~~~~i~   87 (195)
T d1kola2          20 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ---------GF---EIADLSLDTPLHEQIA   87 (195)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---------TC---EEEETTSSSCHHHHHH
T ss_pred             HhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc---------cc---cEEEeCCCcCHHHHHH
Confidence            46789999999999996 6666666654 65 799999999999988764         11   1111111111      


Q ss_pred             -CCCCCCeeEEEecchh---------------hhHHHHHHHhccCCcEEEEEe
Q psy7837         197 -YPDAAPYDVIYISQAI---------------RDIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       197 -~~~~~~fD~v~~~~~~---------------~~~~~~~~~~L~~gG~lv~~~  233 (299)
                       ......+|+++-....               ....+...+.++|||++++.-
T Consensus        88 ~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G  140 (195)
T d1kola2          88 ALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  140 (195)
T ss_dssp             HHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             HHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence             1123568998865432               246688999999999999874

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=97.02  E-value=0.00091  Score=56.35  Aligned_cols=54  Identities=9%  Similarity=-0.028  Sum_probs=44.7

Q ss_pred             HHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          59 ELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        59 ~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ..+...+.+|.+|||+.||+|.++..++...  ..+|+++|+++..++.+++++..
T Consensus       136 ~~l~~~~~~g~~VLdlf~~~G~~sl~aa~~g--a~~V~~vD~s~~a~~~a~~N~~~  189 (317)
T d2b78a2         136 NELINGSAAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEA  189 (317)
T ss_dssp             HHHHHTTTBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHH
T ss_pred             HHHHHHhhCCCceeecCCCCcHHHHHHHhCC--CceEEEecCCHHHHHHHHHHHHH
Confidence            3444457789999999999999998776532  35799999999999999999875

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.97  E-value=0.00097  Score=55.77  Aligned_cols=57  Identities=14%  Similarity=-0.004  Sum_probs=45.8

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ...+..+.....+|.+|||+.||+|.++..++...   .+|+++|.++..++.+++++..
T Consensus       120 r~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~G---A~V~~VD~s~~al~~a~~N~~l  176 (309)
T d2igta1         120 WEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAG---AEVTHVDASKKAIGWAKENQVL  176 (309)
T ss_dssp             HHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTT---CEEEEECSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhCC---CeEEEEeChHHHHHHHHHhhhh
Confidence            34444444446778999999999999999888643   2699999999999999999875

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00047  Score=53.21  Aligned_cols=39  Identities=21%  Similarity=0.430  Sum_probs=36.0

Q ss_pred             cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCH
Q psy7837          64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP  102 (299)
Q Consensus        64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~  102 (299)
                      -++++.+|||+||++|.|++++.+..+..+.++++|..+
T Consensus        19 l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~   57 (180)
T d1ej0a_          19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP   57 (180)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC
T ss_pred             ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc
Confidence            468999999999999999999999999899999999755

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.96  E-value=0.0005  Score=55.10  Aligned_cols=51  Identities=20%  Similarity=0.281  Sum_probs=42.7

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHH
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNI  173 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~  173 (299)
                      +..+......++|||+|+++|+.++.+++.   +.+++.+|.+++..+.|++++
T Consensus        51 L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~  104 (227)
T d1susa1          51 LSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVI  104 (227)
T ss_dssp             HHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHH
T ss_pred             HHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHH
Confidence            334444566899999999999999999864   679999999999999998873

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.00087  Score=57.38  Aligned_cols=62  Identities=18%  Similarity=0.278  Sum_probs=49.4

Q ss_pred             CcchHHHHHHHHhcc--CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          50 SPSDHCLVLELLSGH--LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        50 ~p~~~~~~~~~l~~~--~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .+.....+++.+.+.  ..++++|||+-||+|.++..|++..   .+|+++|.++..++.|+++...
T Consensus       193 N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~---~~V~gvE~~~~ai~~A~~na~~  256 (358)
T d1uwva2         193 NAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARL  256 (358)
T ss_dssp             BHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHH
T ss_pred             chhhhhHHHHHHHHhhccCCCceEEEecccccccchhccccc---cEEEeccCcHHHHHHHHHhHHh
Confidence            344445555554432  5688999999999999999999765   4699999999999999998875

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.90  E-value=0.0014  Score=52.84  Aligned_cols=45  Identities=18%  Similarity=0.118  Sum_probs=42.9

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHH
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIR  174 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~  174 (299)
                      .+|..|||..||+|+.+.+..+.|.+.+|+|+++..++.|+++++
T Consensus       211 ~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         211 NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence            678999999999999999999999999999999999999999875

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.89  E-value=0.0013  Score=49.63  Aligned_cols=98  Identities=14%  Similarity=0.114  Sum_probs=64.6

Q ss_pred             hcccCCCCeEEEEcCCC-cHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-----
Q psy7837         126 YGHLVYGSKVLDIGSGS-GYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-----  198 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~-G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-----  198 (299)
                      ...+.++.+||-.|+|+ |.....+++. |++|++++.+++-++.+++.         +..   .+.........     
T Consensus        22 ~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~---------Ga~---~~~~~~~~~~~~~~~~   89 (168)
T d1rjwa2          22 VTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL---------GAD---LVVNPLKEDAAKFMKE   89 (168)
T ss_dssp             HHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT---------TCS---EEECTTTSCHHHHHHH
T ss_pred             HhCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc---------Ccc---eecccccchhhhhccc
Confidence            34678999999999984 4444555544 88999999999998888763         111   11111111000     


Q ss_pred             CCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecC
Q psy7837         199 DAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       199 ~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      ....+|.++.+.......+...+.|+++|++++.-..
T Consensus        90 ~~~~~~~~v~~~~~~~~~~~a~~~l~~~G~i~~~g~~  126 (168)
T d1rjwa2          90 KVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLP  126 (168)
T ss_dssp             HHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCC
T ss_pred             ccCCCceEEeecCCHHHHHHHHHHhccCCceEecccc
Confidence            0133555556666677788999999999999987543

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.001  Score=51.36  Aligned_cols=57  Identities=16%  Similarity=0.056  Sum_probs=45.2

Q ss_pred             HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.++..|.. -..+.+|||++||+|.++..++....  .+|+.+|.+...++.+++++..
T Consensus        32 e~lfn~l~~-~~~~~~vLDlfaGsG~~giealsrGa--~~v~~VE~~~~a~~~~k~N~~~   88 (183)
T d2fpoa1          32 ETLFNWLAP-VIVDAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLAT   88 (183)
T ss_dssp             HHHHHHHHH-HHTTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHH
T ss_pred             HHHHhhhhc-ccchhhhhhhhccccceeeeEEecCc--ceeEEEEEeechhhHHHHHHhh
Confidence            455555543 24678999999999999987666543  3899999999999999999876

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.86  E-value=0.0018  Score=54.62  Aligned_cols=56  Identities=23%  Similarity=0.210  Sum_probs=47.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc-C-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCC
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM-G-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGR  194 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~-~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  194 (299)
                      .+..|||||.|.|.+|..+... + .+|+++|.++...+..++.+.        ..++.++.+|+.
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~--------~~~~~ii~~D~l  100 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE--------GSPLQILKRDPY  100 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT--------TSSCEEECSCTT
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc--------CCCcEEEeCchh
Confidence            5678999999999999999876 3 479999999999999887643        357899999976

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.84  E-value=0.00087  Score=51.29  Aligned_cols=101  Identities=13%  Similarity=0.064  Sum_probs=65.8

Q ss_pred             hhcccCCCCeEEEEcCC-CcHHHHHHHHc-CC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCC-eEEEEcCCC--C--C
Q psy7837         125 FYGHLVYGSKVLDIGSG-SGYLSALFAYM-GA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAEN-FEFVCADGR--R--G  196 (299)
Q Consensus       125 ~~~~~~~~~~vLDiG~G-~G~~~~~la~~-~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~-v~~~~~d~~--~--~  196 (299)
                      ..+.++++.+||-+||| .|..+..+++. |+ +|+++|.++.-++.+++.         +... +.....|..  .  .
T Consensus        21 ~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l---------Ga~~~i~~~~~d~~~~~~~~   91 (174)
T d1p0fa2          21 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL---------GATECLNPKDYDKPIYEVIC   91 (174)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT---------TCSEEECGGGCSSCHHHHHH
T ss_pred             HhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc---------CCcEEEcCCCchhHHHHHHH
Confidence            35678999999999998 44555555554 65 699999999999998874         2111 111111211  0  0


Q ss_pred             CCCCCCeeEEEecchhhhHHHHHHHhccC-CcEEEEEec
Q psy7837         197 YPDAAPYDVIYISQAIRDIPWHIVDQLKL-GGRMLFIKG  234 (299)
Q Consensus       197 ~~~~~~fD~v~~~~~~~~~~~~~~~~L~~-gG~lv~~~~  234 (299)
                      ....+.+|+++-..............+++ +|.+++.-.
T Consensus        92 ~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~  130 (174)
T d1p0fa2          92 EKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGL  130 (174)
T ss_dssp             HHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             HhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEE
Confidence            01225699999887777777777776655 588887654

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.0014  Score=50.13  Aligned_cols=103  Identities=17%  Similarity=0.119  Sum_probs=69.8

Q ss_pred             HHhhhcccCCCCeEEEEcCCC--cHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC---
Q psy7837         122 RINFYGHLVYGSKVLDIGSGS--GYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR---  195 (299)
Q Consensus       122 ~~~~~~~~~~~~~vLDiG~G~--G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~---  195 (299)
                      .+.....++++++||-.|++.  |.....+++. |++|++++.++...+.+++.         +.+.  ++.-.-.+   
T Consensus        19 al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~l---------Ga~~--vi~~~~~d~~~   87 (179)
T d1qora2          19 LLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA---------GAWQ--VINYREEDLVE   87 (179)
T ss_dssp             HHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH---------TCSE--EEETTTSCHHH
T ss_pred             HHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhc---------CCeE--EEECCCCCHHH
Confidence            344566789999999997774  5666677665 99999999999998888764         2221  22211111   


Q ss_pred             ---CCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCC
Q psy7837         196 ---GYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       196 ---~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                         .......+|+|+-... ..........++++|++++.....
T Consensus        88 ~v~~~t~g~g~d~v~d~~g-~~~~~~~~~~l~~~G~~v~~g~~~  130 (179)
T d1qora2          88 RLKEITGGKKVRVVYDSVG-RDTWERSLDCLQRRGLMVSFGNSS  130 (179)
T ss_dssp             HHHHHTTTCCEEEEEECSC-GGGHHHHHHTEEEEEEEEECCCTT
T ss_pred             HHHHHhCCCCeEEEEeCcc-HHHHHHHHHHHhcCCeeeeccccc
Confidence               0112357998876554 455678899999999988765433

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.63  E-value=0.0026  Score=48.35  Aligned_cols=103  Identities=14%  Similarity=0.071  Sum_probs=69.6

Q ss_pred             HhhhcccCCCCeEEEEcCC-CcHHHHHHHHc-C-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcC-CCCC--
Q psy7837         123 INFYGHLVYGSKVLDIGSG-SGYLSALFAYM-G-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCAD-GRRG--  196 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G-~G~~~~~la~~-~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d-~~~~--  196 (299)
                      +...+.+++|.+||-.||| .|.++.++++. | ..|+++|.++..++.+++.         +...  ++..+ ....  
T Consensus        20 l~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l---------Ga~~--~i~~~~~~~~~~   88 (176)
T d2fzwa2          20 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF---------GATE--CINPQDFSKPIQ   88 (176)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH---------TCSE--EECGGGCSSCHH
T ss_pred             HHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh---------CCcE--EEeCCchhhHHH
Confidence            3445678999999999998 44455555554 6 4699999999998888864         2111  11111 1110  


Q ss_pred             ----CCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCC
Q psy7837         197 ----YPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       197 ----~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                          ....+.+|+|+-...-....+....++++||.+++.....
T Consensus        89 ~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~~~~  132 (176)
T d2fzwa2          89 EVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVA  132 (176)
T ss_dssp             HHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCC
T ss_pred             HHHHHHcCCCCcEeeecCCCHHHHHHHHHhhcCCceeEEEEeec
Confidence                0122569999988877888889999999998877665433

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.61  E-value=0.0015  Score=49.99  Aligned_cols=104  Identities=13%  Similarity=0.031  Sum_probs=65.2

Q ss_pred             hhhcccCCCCeEEEEcCC-CcHHHHHHHHc-C-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCC-C---C
Q psy7837         124 NFYGHLVYGSKVLDIGSG-SGYLSALFAYM-G-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGR-R---G  196 (299)
Q Consensus       124 ~~~~~~~~~~~vLDiG~G-~G~~~~~la~~-~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~-~---~  196 (299)
                      ...+.++++.+|+-+||| .|..+..+++. | .+|+++|.+++.++.+++.-        ...-+.....|.. .   .
T Consensus        22 ~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~G--------A~~~in~~~~~~~~~~~~~   93 (176)
T d1d1ta2          22 VKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVG--------ATECISPKDSTKPISEVLS   93 (176)
T ss_dssp             HTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHT--------CSEEECGGGCSSCHHHHHH
T ss_pred             HHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcC--------CcEEECccccchHHHHHHH
Confidence            344568899999999998 45555555554 6 57999999999999998862        1111111111111 0   0


Q ss_pred             CCCCCCeeEEEecchhhhHHHHHHHhc-cCCcEEEEEecC
Q psy7837         197 YPDAAPYDVIYISQAIRDIPWHIVDQL-KLGGRMLFIKGH  235 (299)
Q Consensus       197 ~~~~~~fD~v~~~~~~~~~~~~~~~~L-~~gG~lv~~~~~  235 (299)
                      ......+|+++-...-..........+ +.+|++++.-.+
T Consensus        94 ~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~  133 (176)
T d1d1ta2          94 EMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVP  133 (176)
T ss_dssp             HHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCC
T ss_pred             HhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEcc
Confidence            012256999887777666555555444 556888887543

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.59  E-value=0.0018  Score=53.92  Aligned_cols=47  Identities=15%  Similarity=0.001  Sum_probs=43.6

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHh
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRR  175 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~  175 (299)
                      ..+|..|||..||+|+.+.++..+|.+.+++|++++.++.+++++..
T Consensus       248 s~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         248 TEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSC
T ss_pred             ccCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHh
Confidence            35789999999999999999999999999999999999999988755

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.56  E-value=0.0022  Score=54.11  Aligned_cols=70  Identities=19%  Similarity=0.089  Sum_probs=48.2

Q ss_pred             ccccCCcchHHHHHHHHhc--cCCCCCEEEEEccCCCHHHHHHHHHhCC----CceEEEEeCCHHHHHHHHHHHHH
Q psy7837          45 NAFMESPSDHCLVLELLSG--HLKYGDKVLEIGTGSGYLTTLFGAMVGI----SGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        45 ~~~~~~p~~~~~~~~~l~~--~~~~g~~vldiG~G~G~~~~~la~~~~~----~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      |+.+....+...|.+.+..  ..+++.+|||.+||+|.+...+.+.+..    ..+++|+|+++.++..|+.++..
T Consensus        93 g~~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~  168 (328)
T d2f8la1          93 NHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADL  168 (328)
T ss_dssp             GGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHH
T ss_pred             CeEECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHH
Confidence            3333333344444444322  2467889999999999998888765533    34799999999999888776654

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.50  E-value=0.0035  Score=52.76  Aligned_cols=68  Identities=15%  Similarity=0.090  Sum_probs=52.4

Q ss_pred             cccc-cCCcchHHHHHHHHhc--cC--CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Q psy7837          44 HNAF-MESPSDHCLVLELLSG--HL--KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV  112 (299)
Q Consensus        44 ~~~~-~~~p~~~~~~~~~l~~--~~--~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l  112 (299)
                      .||+ +.++.+...+++.+.-  ..  ...+.|||||+|.|.+|..|.+..++ .+++++|+++.+.+..++.+
T Consensus        15 ~GQnfL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~-~~v~~iE~D~~~~~~L~~~~   87 (322)
T d1i4wa_          15 YGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCP-RQYSLLEKRSSLYKFLNAKF   87 (322)
T ss_dssp             GGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCC-SEEEEECCCHHHHHHHHHHT
T ss_pred             ccccccCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHhc
Confidence            4554 4688888999988751  11  25678999999999999999887542 47999999999988766543

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.50  E-value=0.0028  Score=48.49  Aligned_cols=105  Identities=12%  Similarity=-0.058  Sum_probs=69.1

Q ss_pred             HhhhcccCCCCeEEEEcCC--CcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC--CC
Q psy7837         123 INFYGHLVYGSKVLDIGSG--SGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR--GY  197 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G--~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~--~~  197 (299)
                      +.......++.+||--|++  .|.++.++++. |++|+++..+++..+.+++.         +.+.+--...+...  ..
T Consensus        23 L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~l---------Ga~~vi~~~~~~~~~~~~   93 (176)
T d1xa0a2          23 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVL---------GAKEVLAREDVMAERIRP   93 (176)
T ss_dssp             HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHT---------TCSEEEECC---------
T ss_pred             HHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhc---------ccceeeecchhHHHHHHH
Confidence            4445667789999999976  45666677754 99999999998888888764         22211111111111  11


Q ss_pred             CCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         198 PDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       198 ~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      ...+.+|+|+- .+-....+...+.|++||+++..-....
T Consensus        94 ~~~~gvD~vid-~vgg~~~~~~l~~l~~~Griv~~G~~~g  132 (176)
T d1xa0a2          94 LDKQRWAAAVD-PVGGRTLATVLSRMRYGGAVAVSGLTGG  132 (176)
T ss_dssp             CCSCCEEEEEE-CSTTTTHHHHHHTEEEEEEEEECSCCSS
T ss_pred             hhccCcCEEEE-cCCchhHHHHHHHhCCCceEEEeecccC
Confidence            23367998764 4555677899999999999998765433

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.47  E-value=0.0035  Score=51.14  Aligned_cols=47  Identities=21%  Similarity=0.159  Sum_probs=44.3

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHh
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRR  175 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~  175 (299)
                      ..+|..|||..||+|+.+.+...+|.+.+++|+++...+.++++++.
T Consensus       205 s~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~  251 (279)
T d1eg2a_         205 SHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTF  251 (279)
T ss_dssp             SCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHH
T ss_pred             cCCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHH
Confidence            35799999999999999999999999999999999999999999876

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.36  E-value=0.0042  Score=47.22  Aligned_cols=102  Identities=12%  Similarity=-0.012  Sum_probs=65.5

Q ss_pred             HhhhcccCCCCeEEEEcCCCc-HHHHHHH-HcC-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC---
Q psy7837         123 INFYGHLVYGSKVLDIGSGSG-YLSALFA-YMG-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG---  196 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G-~~~~~la-~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---  196 (299)
                      +...+.+++|.+||-+|+|.+ .....++ ..+ .+|+++|.++.-.+.+++.-         ... .+...+..+.   
T Consensus        20 l~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~G---------a~~-~i~~~~~~~~~~~   89 (176)
T d2jhfa2          20 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG---------ATE-CVNPQDYKKPIQE   89 (176)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT---------CSE-EECGGGCSSCHHH
T ss_pred             HHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhC---------Cee-EEecCCchhHHHH
Confidence            334567899999999999743 2333333 345 57999999999999887752         111 1111111111   


Q ss_pred             ---CCCCCCeeEEEecchhhhHHHHHHHhccCCc-EEEEEec
Q psy7837         197 ---YPDAAPYDVIYISQAIRDIPWHIVDQLKLGG-RMLFIKG  234 (299)
Q Consensus       197 ---~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG-~lv~~~~  234 (299)
                         ....+.+|+++-........+.....++.+| .+++...
T Consensus        90 ~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~  131 (176)
T d2jhfa2          90 VLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGV  131 (176)
T ss_dssp             HHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSC
T ss_pred             HHHHHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecC
Confidence               0122579999998888888888888888874 5554443

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.28  E-value=0.0016  Score=49.84  Aligned_cols=98  Identities=23%  Similarity=0.212  Sum_probs=65.7

Q ss_pred             HhhhcccCCCCeEEEEcC-C-CcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC----
Q psy7837         123 INFYGHLVYGSKVLDIGS-G-SGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR----  195 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~-G-~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~----  195 (299)
                      +...+.+.++++||-.|+ | .|.++..+++. |++++++..+++..+.+++.         +...  ++...-.+    
T Consensus        17 l~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~---------Ga~~--vi~~~~~~~~~~   85 (183)
T d1pqwa_          17 LCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL---------GVEY--VGDSRSVDFADE   85 (183)
T ss_dssp             HHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT---------CCSE--EEETTCSTHHHH
T ss_pred             HHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccc---------cccc--cccCCccCHHHH
Confidence            445667889999999874 2 56666677765 89999999888777766642         2222  22211111    


Q ss_pred             --CCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEE
Q psy7837         196 --GYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFI  232 (299)
Q Consensus       196 --~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~  232 (299)
                        .......+|+|+.... ....+.+.+.|+++|+++..
T Consensus        86 v~~~t~~~g~d~v~d~~g-~~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          86 ILELTDGYGVDVVLNSLA-GEAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             HHHHTTTCCEEEEEECCC-THHHHHHHHTEEEEEEEEEC
T ss_pred             HHHHhCCCCEEEEEeccc-chHHHHHHHHhcCCCEEEEE
Confidence              0112357999997655 35667788999999999886

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.20  E-value=0.0012  Score=50.16  Aligned_cols=96  Identities=14%  Similarity=0.148  Sum_probs=66.5

Q ss_pred             cccCCCCeEEEEcCC--CcHHHHHHHH-cC-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC------
Q psy7837         127 GHLVYGSKVLDIGSG--SGYLSALFAY-MG-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG------  196 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G--~G~~~~~la~-~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~------  196 (299)
                      ..+.++.+||-+|++  .|..+..+++ .| ..|+.+|.++.-++.+++.         +.+  .++..+..+.      
T Consensus        23 ~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~---------Ga~--~~i~~~~~~~~~~~~~   91 (170)
T d1jvba2          23 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA---------GAD--YVINASMQDPLAEIRR   91 (170)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH---------TCS--EEEETTTSCHHHHHHH
T ss_pred             hCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc---------CCc--eeeccCCcCHHHHHHH
Confidence            467899999999974  4455555544 46 5799999999988888764         211  1222221110      


Q ss_pred             CCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEe
Q psy7837         197 YPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       197 ~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~  233 (299)
                      ......||+++-...-....+...+.++|+|++++.-
T Consensus        92 ~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2          92 ITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             HTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECC
T ss_pred             HhhcccchhhhcccccchHHHhhhhhcccCCEEEEec
Confidence            1123569999987777777788899999999998774

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.17  E-value=0.002  Score=48.62  Aligned_cols=92  Identities=18%  Similarity=0.192  Sum_probs=64.1

Q ss_pred             CCCeEEEEcCC-CcHHHHHHH-HcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837         131 YGSKVLDIGSG-SGYLSALFA-YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI  208 (299)
Q Consensus       131 ~~~~vLDiG~G-~G~~~~~la-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  208 (299)
                      ++.+|+-+|+| .|..++..+ ++|++|+.+|.+++.++..+.....         +++....+-......-...|+|+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~---------~~~~~~~~~~~l~~~~~~aDivI~  101 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS---------RVELLYSNSAEIETAVAEADLLIG  101 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG---------GSEEEECCHHHHHHHHHTCSEEEE
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc---------cceeehhhhhhHHHhhccCcEEEE
Confidence            56899999999 666666555 5699999999999999888776543         455544432211111135799987


Q ss_pred             cchhh------hHHHHHHHhccCCcEEEE
Q psy7837         209 SQAIR------DIPWHIVDQLKLGGRMLF  231 (299)
Q Consensus       209 ~~~~~------~~~~~~~~~L~~gG~lv~  231 (299)
                      .....      .+.++..+.+|||..++=
T Consensus       102 aalipG~~aP~lIt~~mv~~Mk~GSVIVD  130 (168)
T d1pjca1         102 AVLVPGRRAPILVPASLVEQMRTGSVIVD  130 (168)
T ss_dssp             CCCCTTSSCCCCBCHHHHTTSCTTCEEEE
T ss_pred             eeecCCcccCeeecHHHHhhcCCCcEEEE
Confidence            66542      344789999999987663

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.14  E-value=0.0031  Score=48.33  Aligned_cols=99  Identities=14%  Similarity=0.089  Sum_probs=67.3

Q ss_pred             HhhhcccCCCCeEEEEcCCC--cHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCC--C--
Q psy7837         123 INFYGHLVYGSKVLDIGSGS--GYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGR--R--  195 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~--G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~--~--  195 (299)
                      +...+++++|++||-.|++.  |..+..+++. |++|+++..+++..+.+++.         +...+ +...+..  .  
T Consensus        21 l~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~---------Ga~~v-i~~~~~~~~~~~   90 (182)
T d1v3va2          21 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI---------GFDAA-FNYKTVNSLEEA   90 (182)
T ss_dssp             HHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---------TCSEE-EETTSCSCHHHH
T ss_pred             HHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh---------hhhhh-cccccccHHHHH
Confidence            44466788999999988865  4555666665 89999999999887777664         22221 2111111  0  


Q ss_pred             -CCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEE
Q psy7837         196 -GYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFI  232 (299)
Q Consensus       196 -~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~  232 (299)
                       .......+|+|+-... ....+...+.|+++|.+++.
T Consensus        91 ~~~~~~~Gvd~v~D~vG-~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2          91 LKKASPDGYDCYFDNVG-GEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             HHHHCTTCEEEEEESSC-HHHHHHHGGGEEEEEEEEEC
T ss_pred             HHHhhcCCCceeEEecC-chhhhhhhhhccCCCeEEee
Confidence             0112356999886554 56778999999999999986

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.09  E-value=0.0067  Score=46.51  Aligned_cols=41  Identities=15%  Similarity=0.131  Sum_probs=36.7

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHH
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKR  168 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~  168 (299)
                      ...++..++|..+|.|..+..+...+.+|+++|.++.++..
T Consensus        15 ~~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~   55 (182)
T d1wg8a2          15 AVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVAR   55 (182)
T ss_dssp             TCCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHH
Confidence            45789999999999999999999888999999999988753

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=96.05  E-value=0.011  Score=47.51  Aligned_cols=104  Identities=13%  Similarity=0.050  Sum_probs=68.7

Q ss_pred             hcccCCCCeEEEEcCCCcHHHHHHHHcC------------------------------------------CeEEEEeCCh
Q psy7837         126 YGHLVYGSKVLDIGSGSGYLSALFAYMG------------------------------------------AKVYAIEHVK  163 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G~G~~~~~la~~~------------------------------------------~~v~~~D~~~  163 (299)
                      +..-..+..++|.-||||++.++.+...                                          ..+++.|+++
T Consensus        45 l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~  124 (249)
T d1o9ga_          45 RLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYL  124 (249)
T ss_dssp             TSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred             hhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCH
Confidence            3333556689999999999998776531                                          1245677777


Q ss_pred             HHHHHHH---HHHHhcCCcccCCCCeEEEEcCCCCCCC-----CCCCeeEEEecchhh---------------hHHHHHH
Q psy7837         164 NLCKRAM---KNIRRGAPAIALAENFEFVCADGRRGYP-----DAAPYDVIYISQAIR---------------DIPWHIV  220 (299)
Q Consensus       164 ~~~~~a~---~~~~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~fD~v~~~~~~~---------------~~~~~~~  220 (299)
                      .+++.++   +|++..    +....+.+...|+.+..+     .....++|++|++.-               .+...+.
T Consensus       125 ~ai~~A~~~r~n~~~A----gl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~  200 (249)
T d1o9ga_         125 EAAQAARRLRERLTAE----GGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLA  200 (249)
T ss_dssp             HHHHHHHHHHHHHHHT----TSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc----CCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHH
Confidence            7777774   466653    566789999999864221     235579999999851               2233567


Q ss_pred             HhccCCcEEEEEe
Q psy7837         221 DQLKLGGRMLFIK  233 (299)
Q Consensus       221 ~~L~~gG~lv~~~  233 (299)
                      +.+.....++++.
T Consensus       201 ~~~p~~s~~~it~  213 (249)
T d1o9ga_         201 SALPAHAVIAVTD  213 (249)
T ss_dssp             HHSCTTCEEEEEE
T ss_pred             ccCCCCcEEEEeC
Confidence            7775555555543

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.92  E-value=0.0027  Score=48.26  Aligned_cols=95  Identities=20%  Similarity=0.149  Sum_probs=61.8

Q ss_pred             hcccCCCCeEEEEcC-C-CcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCC
Q psy7837         126 YGHLVYGSKVLDIGS-G-SGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAP  202 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~-G-~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  202 (299)
                      ..++.++++||-.|+ | .|.....+++. |++|++++.+++..+.+++.         +.+.+ +-..+..........
T Consensus        22 ~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~l---------Ga~~~-i~~~~~~~~~~~~~g   91 (171)
T d1iz0a2          22 RAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLAL---------GAEEA-ATYAEVPERAKAWGG   91 (171)
T ss_dssp             HTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHT---------TCSEE-EEGGGHHHHHHHTTS
T ss_pred             HhCCCCCCEEEEEeccccchhhhhhhhccccccccccccccccccccccc---------cccee-eehhhhhhhhhcccc
Confidence            357889999999985 3 45666667765 89999999998877777653         22221 111111111112256


Q ss_pred             eeEEEecchhhhHHHHHHHhccCCcEEEEE
Q psy7837         203 YDVIYISQAIRDIPWHIVDQLKLGGRMLFI  232 (299)
Q Consensus       203 fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~  232 (299)
                      +|+|+-...  ...+...+.|+++|+++..
T Consensus        92 ~D~v~d~~G--~~~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          92 LDLVLEVRG--KEVEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             EEEEEECSC--TTHHHHHTTEEEEEEEEEC
T ss_pred             ccccccccc--hhHHHHHHHHhcCCcEEEE
Confidence            999885332  3346778899999999875

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=95.73  E-value=0.0093  Score=45.04  Aligned_cols=101  Identities=15%  Similarity=0.077  Sum_probs=64.4

Q ss_pred             HhhhcccCCCCeEEEEcCCCcHHHH-HHH-HcC-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--
Q psy7837         123 INFYGHLVYGSKVLDIGSGSGYLSA-LFA-YMG-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--  197 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~G~~~~-~la-~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--  197 (299)
                      +...+.++++.+|+-+|+|.+.... .++ ..+ ..|+++|.+++-++.+++.         +.+.  ++..+-....  
T Consensus        20 ~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~---------GAd~--~in~~~~~~~~~   88 (175)
T d1cdoa2          20 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF---------GATD--FVNPNDHSEPIS   88 (175)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT---------TCCE--EECGGGCSSCHH
T ss_pred             HHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc---------CCcE--EEcCCCcchhHH
Confidence            3445678999999999999644433 333 344 4699999999998888764         2211  2221111111  


Q ss_pred             -----CCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEec
Q psy7837         198 -----PDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       198 -----~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~  234 (299)
                           .....+|+++-...-.........++++||..++...
T Consensus        89 ~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g  130 (175)
T d1cdoa2          89 QVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVG  130 (175)
T ss_dssp             HHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECS
T ss_pred             HHHHhhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEE
Confidence                 0125699999888777777777887777655544443

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=95.62  E-value=0.017  Score=44.16  Aligned_cols=59  Identities=17%  Similarity=0.030  Sum_probs=47.4

Q ss_pred             hHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          53 DHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        53 ~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.+.++..|... ..|.+|||+-||||.++........  .+++.+|.+...++..++++..
T Consensus        30 vrealFn~l~~~-~~~~~vLDlFaGsG~~glEalSRGA--~~v~fVE~~~~a~~~ik~Ni~~   88 (183)
T d2ifta1          30 VKETLFNWLMPY-IHQSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQT   88 (183)
T ss_dssp             HHHHHHHHHHHH-HTTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhh-cccceEeecccCccceeeeeeeecc--eeeEEeecccchhhhHhhHHhh
Confidence            345566666532 3678999999999999998776654  3899999999999999999876

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.054  Score=43.53  Aligned_cols=78  Identities=10%  Similarity=0.045  Sum_probs=58.6

Q ss_pred             CCCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---------
Q psy7837         130 VYGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---------  197 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---------  197 (299)
                      .+++.+|-.|+++|.   .+..+++.|++|+.++.+++.++.+.+.++..    ....++.++++|+....         
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~----~~~~~~~~~~~Dls~~~~v~~~v~~~   83 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSA----GYPGTLIPYRCDLSNEEDILSMFSAI   83 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----TCSSEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----CCCceEEEEEccCCCHHHHHHHHHHH
Confidence            568999999999885   34456777999999999999988888877662    23457888999987421         


Q ss_pred             -CCCCCeeEEEecch
Q psy7837         198 -PDAAPYDVIYISQA  211 (299)
Q Consensus       198 -~~~~~fD~v~~~~~  211 (299)
                       ...+++|+++.++.
T Consensus        84 ~~~~g~iD~lVnnAg   98 (257)
T d1xg5a_          84 RSQHSGVDICINNAG   98 (257)
T ss_dssp             HHHHCCCSEEEECCC
T ss_pred             HHhcCCCCEEEeccc
Confidence             01267999987764

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=95.47  E-value=0.01  Score=44.74  Aligned_cols=101  Identities=12%  Similarity=-0.004  Sum_probs=66.2

Q ss_pred             hcccCCCCeEEEEcCC--CcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCC-C--CCCC
Q psy7837         126 YGHLVYGSKVLDIGSG--SGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGR-R--GYPD  199 (299)
Q Consensus       126 ~~~~~~~~~vLDiG~G--~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~-~--~~~~  199 (299)
                      .....++.+||--|++  .|.++.++++. |++|+++.-+++..+.+++.         +.+.+ +...|.. .  ....
T Consensus        18 ~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~l---------Gad~v-i~~~~~~~~~~~~~~   87 (167)
T d1tt7a2          18 NGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQL---------GASEV-ISREDVYDGTLKALS   87 (167)
T ss_dssp             TTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHH---------TCSEE-EEHHHHCSSCCCSSC
T ss_pred             hcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhh---------cccce-Eeccchhchhhhccc
Confidence            3445567788887754  56677777776 99999999998888777664         22222 1111211 1  1122


Q ss_pred             CCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCC
Q psy7837         200 AAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHED  237 (299)
Q Consensus       200 ~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  237 (299)
                      .+.+|+|+- .+-....++..+.|+++|++++.-....
T Consensus        88 ~~gvd~vid-~vgg~~~~~~~~~l~~~G~iv~~G~~~g  124 (167)
T d1tt7a2          88 KQQWQGAVD-PVGGKQLASLLSKIQYGGSVAVSGLTGG  124 (167)
T ss_dssp             CCCEEEEEE-SCCTHHHHHHHTTEEEEEEEEECCCSSC
T ss_pred             CCCceEEEe-cCcHHHHHHHHHHhccCceEEEeeccCC
Confidence            357998874 4445667889999999999998755443

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=95.07  E-value=0.046  Score=45.00  Aligned_cols=69  Identities=22%  Similarity=0.157  Sum_probs=53.9

Q ss_pred             CeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC-CCCeeEEEecc
Q psy7837         133 SKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD-AAPYDVIYISQ  210 (299)
Q Consensus       133 ~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~~~~  210 (299)
                      .+|+|+.||.|.+..-+.+.|.+ +.++|+++..++..+.|.           .-.++.+|+...... -...|+++...
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~-----------~~~~~~~Di~~~~~~~~~~~dll~~g~   69 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH-----------SAKLIKGDISKISSDEFPKCDGIIGGP   69 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHC-----------CSEEEESCTTTSCGGGSCCCSEEEECC
T ss_pred             CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC-----------CCCCccCChhhCCHhHcccccEEeecc
Confidence            36999999999999999888988 679999999998888773           234567888764322 24689999887


Q ss_pred             hh
Q psy7837         211 AI  212 (299)
Q Consensus       211 ~~  212 (299)
                      +.
T Consensus        70 PC   71 (324)
T d1dcta_          70 PC   71 (324)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=94.79  E-value=0.051  Score=41.08  Aligned_cols=97  Identities=11%  Similarity=0.038  Sum_probs=62.9

Q ss_pred             cccCCCCeEEEEcCC--CcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCC--CCCCCCC
Q psy7837         127 GHLVYGSKVLDIGSG--SGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGR--RGYPDAA  201 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G--~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~--~~~~~~~  201 (299)
                      ....++.+||-.|+.  .|..+.++++. |++|+++..+++..+.+++.         +.+.  ++.-+..  .......
T Consensus        27 g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~l---------Gad~--vi~~~~~~~~~~l~~~   95 (177)
T d1o89a2          27 GVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSL---------GASR--VLPRDEFAESRPLEKQ   95 (177)
T ss_dssp             TCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH---------TEEE--EEEGGGSSSCCSSCCC
T ss_pred             CCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhh---------cccc--ccccccHHHHHHHHhh
Confidence            334455678876643  44566667665 99999999999888877654         1111  1222111  1112235


Q ss_pred             CeeEEEecchhhhHHHHHHHhccCCcEEEEEecC
Q psy7837         202 PYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       202 ~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      .+|.++ +.+.........+.|+++|+++..-..
T Consensus        96 ~~~~vv-D~Vgg~~~~~~l~~l~~~Griv~~G~~  128 (177)
T d1o89a2          96 VWAGAI-DTVGDKVLAKVLAQMNYGGCVAACGLA  128 (177)
T ss_dssp             CEEEEE-ESSCHHHHHHHHHTEEEEEEEEECCCT
T ss_pred             cCCeeE-EEcchHHHHHHHHHhccccceEeeccc
Confidence            578765 677777888999999999999987443

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=94.69  E-value=0.029  Score=46.64  Aligned_cols=71  Identities=18%  Similarity=0.147  Sum_probs=54.7

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC-CCCeeEEE
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD-AAPYDVIY  207 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~  207 (299)
                      ..+.+|+|+.||.|.++..+.+.|.+ +.++|+++.+++..+.|...         .   .++|+.+.... -..+|+++
T Consensus         9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~---------~---~~~Di~~~~~~~~~~~Dll~   76 (327)
T d2c7pa1           9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE---------K---PEGDITQVNEKTIPDHDILC   76 (327)
T ss_dssp             TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC---------C---CBSCGGGSCGGGSCCCSEEE
T ss_pred             CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCC---------C---CcCchhcCchhhcceeeeee
Confidence            46789999999999999999999988 77899999999999988633         1   13666643221 24589999


Q ss_pred             ecchh
Q psy7837         208 ISQAI  212 (299)
Q Consensus       208 ~~~~~  212 (299)
                      ...+.
T Consensus        77 ggpPC   81 (327)
T d2c7pa1          77 AGFPC   81 (327)
T ss_dssp             EECCC
T ss_pred             ccccc
Confidence            87764

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=94.51  E-value=0.031  Score=42.66  Aligned_cols=105  Identities=11%  Similarity=0.043  Sum_probs=60.0

Q ss_pred             HhhhcccCCCCeEEEEcCCC---cHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeE-EEEcCCCCCC
Q psy7837         123 INFYGHLVYGSKVLDIGSGS---GYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFE-FVCADGRRGY  197 (299)
Q Consensus       123 ~~~~~~~~~~~~vLDiG~G~---G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~-~~~~d~~~~~  197 (299)
                      +.....+.++.+|+-+.+|+   |..+..+++. |++|+++-.++...+...+.++.     .+.+.+- .-..|.....
T Consensus        20 l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~-----lGad~vi~~~~~~~~~~~   94 (189)
T d1gu7a2          20 LTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKE-----LGATQVITEDQNNSREFG   94 (189)
T ss_dssp             HHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHH-----HTCSEEEEHHHHHCGGGH
T ss_pred             HHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhh-----ccccEEEeccccchhHHH
Confidence            44456788999888884444   4556666665 99988886554444444433333     1222211 1011111100


Q ss_pred             --------CCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEe
Q psy7837         198 --------PDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       198 --------~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~  233 (299)
                              .....+|+++- .+-........+.|+++|+++..-
T Consensus        95 ~~v~~~~~~~g~~vdvv~D-~vg~~~~~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2          95 PTIKEWIKQSGGEAKLALN-CVGGKSSTGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             HHHHHHHHHHTCCEEEEEE-SSCHHHHHHHHHTSCTTCEEEECC
T ss_pred             HHHHHHHhhccCCceEEEE-CCCcchhhhhhhhhcCCcEEEEEC
Confidence                    01246888884 333445577889999999998763

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.40  E-value=0.12  Score=41.21  Aligned_cols=77  Identities=13%  Similarity=0.087  Sum_probs=56.7

Q ss_pred             CCCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---------
Q psy7837         130 VYGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---------  197 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---------  197 (299)
                      .+++++|-.|++.|.   .+..+++.|++|+.+|.+++.++.+.+.+..     ....++.++.+|+.+..         
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~-----~~g~~~~~~~~Dv~~~~~v~~~~~~~   77 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTE-----KYGVETMAFRCDVSNYEEVKKLLEAV   77 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----HHCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH-----HhCCcEEEEEccCCCHHHHHHHHHHH
Confidence            458999999998874   4456778899999999998888777666544     23457888899987421         


Q ss_pred             -CCCCCeeEEEecch
Q psy7837         198 -PDAAPYDVIYISQA  211 (299)
Q Consensus       198 -~~~~~fD~v~~~~~  211 (299)
                       ...+++|+++.++.
T Consensus        78 ~~~~g~iDiLVnnAG   92 (251)
T d1vl8a_          78 KEKFGKLDTVVNAAG   92 (251)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence             01157999998764

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=94.33  E-value=0.1  Score=43.20  Aligned_cols=49  Identities=20%  Similarity=0.188  Sum_probs=40.8

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .....+||.+|.|.|.....+.+.. +..++..+|+++.+++.+++.+..
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~-~~~~v~~VEiD~~Vi~~a~~~f~~  123 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPE  123 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHH
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcC-CcceEEEecCCHHHHHHHHhcCcc
Confidence            4556899999999999988877643 346899999999999999988754

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.33  E-value=0.036  Score=42.64  Aligned_cols=48  Identities=21%  Similarity=0.290  Sum_probs=39.9

Q ss_pred             ccCCCCCEEEEEccCC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837          63 GHLKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        63 ~~~~~g~~vldiG~G~-G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~  111 (299)
                      +.+++|++||-+|||. |..+..+++..+. .+++.+|.++...+.+++.
T Consensus        21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga-~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2          21 AGVGPGSTVYVAGAGPVGLAAAASARLLGA-AVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHT
T ss_pred             hCCCCCCEEEEECcCHHHHHHHHHHHhhcc-cceeeecccchhhHhhhhc
Confidence            3599999999999998 6677778877663 6899999999988887764

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=94.10  E-value=0.048  Score=48.66  Aligned_cols=68  Identities=12%  Similarity=0.065  Sum_probs=51.9

Q ss_pred             cccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCC-----------------ceEEEEeCCHHHHH
Q psy7837          44 HNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGIS-----------------GKVYTIEHIPELLE  106 (299)
Q Consensus        44 ~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~-----------------g~v~~~d~~~~~~~  106 (299)
                      .|+......+...|++.+.  .+++.+|+|-.||+|.+-..+.+.+...                 ..++|+|+++....
T Consensus       143 ~GqfyTP~~Iv~~mv~ll~--~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~  220 (524)
T d2ar0a1         143 AGQYFTPRPLIKTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRR  220 (524)
T ss_dssp             --CCCCCHHHHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHH
T ss_pred             cchhccccchhHhhhhccc--CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHH
Confidence            3777777777888887776  6889999999999999987766644321                 25899999999998


Q ss_pred             HHHHHHH
Q psy7837         107 AARKRVK  113 (299)
Q Consensus       107 ~a~~~l~  113 (299)
                      .++-++.
T Consensus       221 la~~nl~  227 (524)
T d2ar0a1         221 LALMNCL  227 (524)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8876654

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=93.94  E-value=0.031  Score=42.45  Aligned_cols=96  Identities=18%  Similarity=0.139  Sum_probs=59.2

Q ss_pred             CCCeEEEEcCC-CcHHHHHHH-HcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCC------CeEEEEcCCCCC---CCC
Q psy7837         131 YGSKVLDIGSG-SGYLSALFA-YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAE------NFEFVCADGRRG---YPD  199 (299)
Q Consensus       131 ~~~~vLDiG~G-~G~~~~~la-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~------~v~~~~~d~~~~---~~~  199 (299)
                      ++.+|+-||+| .|..+...| ++|+.|+.+|.++..++..+......     ...      ..+-..+.+...   +..
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~-----i~~~~~~~~~~~~~~gyA~~~s~~~~~  102 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKF-----ITVDDEAMKTAETAGGYAKEMGEEFRK  102 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEE-----CCC-----------------------C
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcce-----EEEeccccccccccccchhhcCHHHHH
Confidence            56799999999 566666555 56999999999999998888754320     000      000000000000   000


Q ss_pred             ---------CCCeeEEEecchhh------hHHHHHHHhccCCcEEEE
Q psy7837         200 ---------AAPYDVIYISQAIR------DIPWHIVDQLKLGGRMLF  231 (299)
Q Consensus       200 ---------~~~fD~v~~~~~~~------~~~~~~~~~L~~gG~lv~  231 (299)
                               -...|+|+......      -+.+++.+.+|||..++=
T Consensus       103 ~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVD  149 (183)
T d1l7da1         103 KQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIID  149 (183)
T ss_dssp             CHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEE
T ss_pred             HHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEE
Confidence                     13579998776543      245799999999987764

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.82  E-value=0.036  Score=42.60  Aligned_cols=42  Identities=17%  Similarity=0.101  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCCCcHHHH----HHHHc------CCeEEEEeCChHHHHHHHHH
Q psy7837         131 YGSKVLDIGSGSGYLSA----LFAYM------GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~----~la~~------~~~v~~~D~~~~~~~~a~~~  172 (299)
                      +.-+||++|||+|.-..    .+...      ..+++++|+++..++.|++.
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g   75 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSG   75 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHT
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcC
Confidence            34599999999997432    23221      23699999999999999864

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=93.70  E-value=0.079  Score=41.92  Aligned_cols=46  Identities=20%  Similarity=0.147  Sum_probs=38.5

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      -.+|+.|||.=||+|..+.+.. .++.  +.+|+|+++..++.|++++.
T Consensus       210 s~~gd~VlDpF~GSGTT~~aa~-~~~R--~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         210 SNPNDLVLDCFMGSGTTAIVAK-KLGR--NFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHH-HTTC--EEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCchHHHHHHH-HcCC--eEEEEeCCHHHHHHHHHHHc
Confidence            4799999999999998765554 4444  69999999999999999875

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=93.62  E-value=0.057  Score=40.63  Aligned_cols=48  Identities=25%  Similarity=0.434  Sum_probs=40.6

Q ss_pred             ccCCCCCEEEEEccCC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837          63 GHLKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        63 ~~~~~g~~vldiG~G~-G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~  111 (299)
                      ..+++|++||-+|||. |.++..+++..+. .+++++|.++.-.+.+++.
T Consensus        23 a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~l   71 (174)
T d1jqba2          23 ADIEMGSSVVVIGIGAVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAKFY   71 (174)
T ss_dssp             TTCCTTCCEEEECCSHHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHHHH
T ss_pred             hCCCCCCEEEEEcCCcchhhhhhhhhcccc-cccccccchhhhHHHHHhh
Confidence            3599999999999988 8888899988764 4699999999888888764

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=93.53  E-value=0.032  Score=44.43  Aligned_cols=36  Identities=19%  Similarity=0.322  Sum_probs=28.4

Q ss_pred             cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeC
Q psy7837          64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEH  100 (299)
Q Consensus        64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~  100 (299)
                      .++++.+|+|+|||.|.|+.+++.... -..+.++++
T Consensus        63 ~~~~~~~vvDlG~~pGgws~~~a~~~~-v~~V~g~~i   98 (257)
T d2p41a1          63 LVTPEGKVVDLGCGRGGWSYYCGGLKN-VREVKGLTK   98 (257)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTSTT-EEEEEEECC
T ss_pred             CccCCCeEEEecCCCChHHHHHHhhcC-CCceeEEEe
Confidence            478999999999999999999987632 234666665

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.45  E-value=0.16  Score=38.36  Aligned_cols=98  Identities=16%  Similarity=0.230  Sum_probs=61.7

Q ss_pred             HhhhcccCCC--CeEEEEcC--CCcHHHHHHHHc-CCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC-
Q psy7837         123 INFYGHLVYG--SKVLDIGS--GSGYLSALFAYM-GAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR-  195 (299)
Q Consensus       123 ~~~~~~~~~~--~~vLDiG~--G~G~~~~~la~~-~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-  195 (299)
                      +.....++++  .+||-.|+  |.|.++..+++. |+. |+++..+++....+.+.+        +.+  .++...-.. 
T Consensus        20 l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~--------gad--~vi~~~~~~~   89 (187)
T d1vj1a2          20 VQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSEL--------GFD--AAVNYKTGNV   89 (187)
T ss_dssp             HHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHS--------CCS--EEEETTSSCH
T ss_pred             HHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcc--------cce--EEeeccchhH
Confidence            3344566666  77999884  488999999985 764 777787766655544331        211  112111110 


Q ss_pred             -----CCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEE
Q psy7837         196 -----GYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFI  232 (299)
Q Consensus       196 -----~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~  232 (299)
                           .. ....+|+|+-... ....+...+.|+++|+++..
T Consensus        90 ~~~~~~~-~~~GvDvv~D~vG-g~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2          90 AEQLREA-CPGGVDVYFDNVG-GDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             HHHHHHH-CTTCEEEEEESSC-HHHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHHH-hccCceEEEecCC-chhHHHHhhhccccccEEEe
Confidence                 01 1256999985443 56678899999999999875

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.30  E-value=0.1  Score=38.66  Aligned_cols=46  Identities=30%  Similarity=0.450  Sum_probs=39.7

Q ss_pred             cCCCCCEEEEEccCC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837          64 HLKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        64 ~~~~g~~vldiG~G~-G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~  111 (299)
                      .+++|++||-+|||. |.++..+++..|.  +++++|.++.-.+.+++.
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga--~vi~v~~~~~r~~~a~~~   69 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGA--FVVCTARSPRRLEVAKNC   69 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHT
T ss_pred             CCCCCCEEEEEcccccchhhHhhHhhhcc--cccccchHHHHHHHHHHc
Confidence            489999999999985 7888888888874  899999999988888764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=93.22  E-value=0.068  Score=40.31  Aligned_cols=47  Identities=23%  Similarity=0.332  Sum_probs=39.7

Q ss_pred             cCCCCCEEEEEccCC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837          64 HLKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        64 ~~~~g~~vldiG~G~-G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~  111 (299)
                      .+++|++||-+|+|+ |.++..+++..|. .+|+++|.++...+.+++.
T Consensus        25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga-~~Vi~~~~~~~~~~~a~~l   72 (182)
T d1vj0a2          25 ESFAGKTVVIQGAGPLGLFGVVIARSLGA-ENVIVIAGSPNRLKLAEEI   72 (182)
T ss_dssp             SCCBTCEEEEECCSHHHHHHHHHHHHTTB-SEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCccchhheeccccccc-ccccccccccccccccccc
Confidence            478999999999986 7888889988874 4899999999988877653

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=92.93  E-value=0.085  Score=43.16  Aligned_cols=57  Identities=21%  Similarity=0.146  Sum_probs=43.9

Q ss_pred             chHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          52 SDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        52 ~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .+.+.+++..   -.+|+.|||.=||+|..+....+ ++.  +.+|+|+++..++.+++++.+
T Consensus       238 ~L~~rlI~~~---s~~gdiVlDpF~GSGTT~~AA~~-lgR--~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         238 KLPEFFIRML---TEPDDLVVDIFGGSNTTGLVAER-ESR--KWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             HHHHHHHHHH---CCTTCEEEETTCTTCHHHHHHHH-TTC--EEEEEESCHHHHHHHHGGGSC
T ss_pred             HHHHHhhhhc---ccCCCEEEecCCCCcHHHHHHHH-cCC--cEEEEeCCHHHHHHHHHHHHh
Confidence            3445555443   47999999999999987666554 444  699999999999999988765

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=92.83  E-value=0.14  Score=40.69  Aligned_cols=54  Identities=15%  Similarity=0.180  Sum_probs=42.7

Q ss_pred             HHHHHHhccCCCC--CEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          56 LVLELLSGHLKYG--DKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        56 ~~~~~l~~~~~~g--~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .+.+.+.  ++++  .+|||..||.|..+..++...+   +|+++|.++.+.....+.+.+
T Consensus        77 ~l~kA~g--l~~~~~~~VlD~TaGlG~Da~vlA~~G~---~V~~iEr~p~l~~ll~d~l~r  132 (250)
T d2oyra1          77 AVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLDDGLAR  132 (250)
T ss_dssp             HHHHHTT--CBTTBCCCEEETTCTTCHHHHHHHHHTC---CEEEEECCHHHHHHHHHHHHH
T ss_pred             HHHHHhc--CCCCCCCEEEECCCcccHHHHHHHhCCC---EEEEEccCHHHHHHHHHHHHH
Confidence            3444443  4444  4899999999999999998754   699999999998888777766

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=92.77  E-value=0.18  Score=40.17  Aligned_cols=73  Identities=21%  Similarity=0.180  Sum_probs=53.0

Q ss_pred             CCCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC--------
Q psy7837         130 VYGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP--------  198 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--------  198 (299)
                      .+|+++|-.|+++|.   .+..+++.|++|+.+|.+++.++.+.+.+         ..+..++.+|..+...        
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~---------~~~~~~~~~Dv~~~~~~~~~~~~~   74 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---------GERSMFVRHDVSSEADWTLVMAAV   74 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---------CTTEEEECCCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---------CCCeEEEEeecCCHHHHHHHHHHH
Confidence            468899999988773   44566778999999999998887766654         2367788888774210        


Q ss_pred             --CCCCeeEEEecch
Q psy7837         199 --DAAPYDVIYISQA  211 (299)
Q Consensus       199 --~~~~fD~v~~~~~  211 (299)
                        ..+..|+++.++.
T Consensus        75 ~~~~g~iDilVnnAG   89 (253)
T d1hxha_          75 QRRLGTLNVLVNNAG   89 (253)
T ss_dssp             HHHHCSCCEEEECCC
T ss_pred             HHHhCCCCeEEeccc
Confidence              1167899988775

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.71  E-value=0.077  Score=39.48  Aligned_cols=47  Identities=30%  Similarity=0.355  Sum_probs=39.2

Q ss_pred             ccCCCCCEEEEEccCC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837          63 GHLKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        63 ~~~~~g~~vldiG~G~-G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~  111 (299)
                      ..+++|++||-+|+|. |.++..+++..|-  +++++|.++...+.+++.
T Consensus        23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~--~vi~~~~~~~k~~~a~~l   70 (168)
T d1piwa2          23 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA--ETYVISRSSRKREDAMKM   70 (168)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHHTC--EEEEEESSSTTHHHHHHH
T ss_pred             hCcCCCCEEEEECCCCcchhHHHHhhhccc--cccccccchhHHHHhhcc
Confidence            3589999999999984 7888888888874  799999999888877654

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.50  E-value=0.12  Score=42.22  Aligned_cols=63  Identities=16%  Similarity=0.145  Sum_probs=48.2

Q ss_pred             CceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHH
Q psy7837          92 SGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKR  168 (299)
Q Consensus        92 ~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~  168 (299)
                      +|.++--|.+..+...+                  ....+|.+|||+.||.|.-+..++..   ...++++|+++.-+..
T Consensus        73 ~G~~~~QD~sS~l~~~~------------------L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~  134 (293)
T d2b9ea1          73 AGHLILQDRASCLPAML------------------LDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLAS  134 (293)
T ss_dssp             TTSEEECCTGGGHHHHH------------------HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred             CcEEEEcCCcccccccc------------------cCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHH
Confidence            46677777766554432                  13467999999999999988888765   5679999999998888


Q ss_pred             HHHH
Q psy7837         169 AMKN  172 (299)
Q Consensus       169 a~~~  172 (299)
                      ++++
T Consensus       135 l~~~  138 (293)
T d2b9ea1         135 MATL  138 (293)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7765

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.47  E-value=0.24  Score=39.43  Aligned_cols=99  Identities=15%  Similarity=0.226  Sum_probs=67.7

Q ss_pred             cCCCCeEEEEcCCCc---HHHHHHHHcCCeEEEE-eCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-------
Q psy7837         129 LVYGSKVLDIGSGSG---YLSALFAYMGAKVYAI-EHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-------  197 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G---~~~~~la~~~~~v~~~-D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-------  197 (299)
                      ...|+++|-.|+++|   ..+..+++.|++|+.+ ..++...+.+.+.++.      ...++.++.+|..+..       
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~------~g~~~~~~~~D~~~~~~v~~~~~   76 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKK------LGAQGVAIQADISKPSEVVALFD   76 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH------TTCCEEEEECCTTSHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHH------cCCCceEecCCCCCHHHHHHHHH
Confidence            356899999998777   4556677889998765 5677778888887766      3347889999987411       


Q ss_pred             ---CCCCCeeEEEecchhh-------------------------hHHHHHHHhccCCcEEEEEe
Q psy7837         198 ---PDAAPYDVIYISQAIR-------------------------DIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       198 ---~~~~~fD~v~~~~~~~-------------------------~~~~~~~~~L~~gG~lv~~~  233 (299)
                         ...+..|+++.+....                         .+.+.+...++.+|.+++..
T Consensus        77 ~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~  140 (259)
T d1ja9a_          77 KAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS  140 (259)
T ss_dssp             HHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccc
Confidence               0126799998877531                         12245667777777666654

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.44  E-value=0.17  Score=40.35  Aligned_cols=47  Identities=21%  Similarity=0.210  Sum_probs=39.9

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      -.+|+.|||.=||+|..+.+..+ ++.  +.+|+|+++...+.+++++..
T Consensus       205 s~~gdiVLDpF~GSGTT~~Aa~~-lgR--~~ig~El~~~y~~~a~~Ri~~  251 (279)
T d1eg2a_         205 SHPGSTVLDFFAGSGVTARVAIQ-EGR--NSICTDAAPVFKEYYQKQLTF  251 (279)
T ss_dssp             SCTTCEEEETTCTTCHHHHHHHH-HTC--EEEEEESSTHHHHHHHHHHHH
T ss_pred             cCCCCEEEecCCCCcHHHHHHHH-hCC--eEEEEeCCHHHHHHHHHHHHH
Confidence            47999999999999987655544 454  799999999999999999986

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.36  E-value=0.47  Score=37.88  Aligned_cols=98  Identities=16%  Similarity=0.229  Sum_probs=68.3

Q ss_pred             CCCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCC-hHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--------
Q psy7837         130 VYGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHV-KNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--------  197 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~-~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--------  197 (299)
                      .+|+++|-.|+++|.   ++..+++.|++|+.++.+ ++.++...+.++.      ...++.++.+|..+..        
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~------~g~~~~~~~~D~~~~~~v~~~~~~   89 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKK------NGSDAACVKANVGVVEDIVRMFEE   89 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH------TTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHh------hCCceeeEeCCCCCHHHHHHHHHH
Confidence            568999999998884   556778889999999986 5566666666655      3457888899987421        


Q ss_pred             --CCCCCeeEEEecchhh-------------------------hHHHHHHHhccCCcEEEEEe
Q psy7837         198 --PDAAPYDVIYISQAIR-------------------------DIPWHIVDQLKLGGRMLFIK  233 (299)
Q Consensus       198 --~~~~~fD~v~~~~~~~-------------------------~~~~~~~~~L~~gG~lv~~~  233 (299)
                        ...+..|+++.+....                         .+.+.+.+.|+.+|..++..
T Consensus        90 ~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~  152 (272)
T d1g0oa_          90 AVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  152 (272)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             HHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence              0125789988776421                         12246777788877777654

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=92.16  E-value=0.33  Score=35.55  Aligned_cols=87  Identities=14%  Similarity=0.171  Sum_probs=53.4

Q ss_pred             CeEEEEcCC--CcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q psy7837         133 SKVLDIGSG--SGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQ  210 (299)
Q Consensus       133 ~~vLDiG~G--~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~  210 (299)
                      ++|.=||+|  -+.++..+.+.|.+|++.|.+++.++.+++.        +...   ....+. +..   ...|+|+...
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~--------~~~~---~~~~~~-~~~---~~~DiIilav   65 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVER--------QLVD---EAGQDL-SLL---QTAKIIFLCT   65 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT--------TSCS---EEESCG-GGG---TTCSEEEECS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHh--------hccc---eeeeec-ccc---cccccccccC
Confidence            357778887  3345556777799999999999888877653        1111   111111 111   4579999876


Q ss_pred             hhhh---HHHHHHHhccCCcEEEEEecC
Q psy7837         211 AIRD---IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       211 ~~~~---~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      +...   +.+++...|+++-.+ +...+
T Consensus        66 p~~~~~~vl~~l~~~l~~~~iv-~~~~s   92 (165)
T d2f1ka2          66 PIQLILPTLEKLIPHLSPTAIV-TDVAS   92 (165)
T ss_dssp             CHHHHHHHHHHHGGGSCTTCEE-EECCS
T ss_pred             cHhhhhhhhhhhhhhcccccce-eeccc
Confidence            6543   445666666666644 44443

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.15  E-value=0.18  Score=37.07  Aligned_cols=45  Identities=29%  Similarity=0.332  Sum_probs=38.4

Q ss_pred             cCCCCCEEEEEccCC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy7837          64 HLKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARK  110 (299)
Q Consensus        64 ~~~~g~~vldiG~G~-G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~  110 (299)
                      .+++|++|+-+|+|. |.++..+++..|  .+++++|.++.-.+.+++
T Consensus        24 ~~~~g~~VlV~GaG~vG~~~~~~ak~~G--~~Vi~~~~~~~~~~~a~~   69 (166)
T d1llua2          24 NARPGQWVAISGIGGLGHVAVQYARAMG--LHVAAIDIDDAKLELARK   69 (166)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEeeccccHHHHHHHHHHcC--CccceecchhhHHHhhhc
Confidence            489999999999987 788888888887  489999999988877765

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=92.15  E-value=0.073  Score=45.11  Aligned_cols=75  Identities=16%  Similarity=0.127  Sum_probs=49.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHc---------CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCC
Q psy7837         131 YGSKVLDIGSGSGYLSALFAYM---------GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAA  201 (299)
Q Consensus       131 ~~~~vLDiG~G~G~~~~~la~~---------~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  201 (299)
                      +..+|+|+|+|+|.++..+.+.         ..+++.+|.|+.+.+.-++++..       ..++.++ .+.....   .
T Consensus        79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~-------~~~i~w~-~~~~~~~---~  147 (365)
T d1zkda1          79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG-------IRNIHWH-DSFEDVP---E  147 (365)
T ss_dssp             SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT-------CSSEEEE-SSGGGSC---C
T ss_pred             ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc-------cccceec-cChhhcc---c
Confidence            4458999999999998766442         34689999999987777766533       2344433 2322221   1


Q ss_pred             CeeEEEecchhhhHH
Q psy7837         202 PYDVIYISQAIRDIP  216 (299)
Q Consensus       202 ~fD~v~~~~~~~~~~  216 (299)
                      ..-+|+++-.+..+|
T Consensus       148 ~~g~iiaNE~fDAlP  162 (365)
T d1zkda1         148 GPAVILANEYFDVLP  162 (365)
T ss_dssp             SSEEEEEESSGGGSC
T ss_pred             CCeEEEecccCcccc
Confidence            136888888887776

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.11  E-value=0.32  Score=39.02  Aligned_cols=97  Identities=16%  Similarity=0.167  Sum_probs=67.2

Q ss_pred             CCeE-EEEcCCCcH---HHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---------
Q psy7837         132 GSKV-LDIGSGSGY---LSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---------  197 (299)
Q Consensus       132 ~~~v-LDiG~G~G~---~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---------  197 (299)
                      |++| |--|+++|.   ++..|++. |+.|+.++.+++.++.+.+.++.      ...++.++.+|..+..         
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~------~~~~~~~~~~Dvs~~~sv~~~~~~~   75 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQA------EGLSPRFHQLDIDDLQSIRALRDFL   75 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHH------TTCCCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHh------cCCcEEEEEEecCCHHHHHHHHHHH
Confidence            6666 555666654   23345665 88999999999999988888876      2346889999987421         


Q ss_pred             -CCCCCeeEEEecchhh-------------------------hHHHHHHHhccCCcEEEEEec
Q psy7837         198 -PDAAPYDVIYISQAIR-------------------------DIPWHIVDQLKLGGRMLFIKG  234 (299)
Q Consensus       198 -~~~~~fD~v~~~~~~~-------------------------~~~~~~~~~L~~gG~lv~~~~  234 (299)
                       ...+++|+++.++...                         .+.+.+...|+++|+++....
T Consensus        76 ~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1          76 RKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             HHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             HHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence             0126799999887531                         112467788889998777643

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=91.97  E-value=0.27  Score=41.29  Aligned_cols=80  Identities=11%  Similarity=0.020  Sum_probs=46.8

Q ss_pred             CeEEEEcCCCcHHHHHHHH------------c------CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCC--eEEEEcC
Q psy7837         133 SKVLDIGSGSGYLSALFAY------------M------GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAEN--FEFVCAD  192 (299)
Q Consensus       133 ~~vLDiG~G~G~~~~~la~------------~------~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~--v~~~~~d  192 (299)
                      -+|.|+||.+|..++.+..            .      ..+|+.-|.-.+--...-+.+....   ....+  +..+.+.
T Consensus        53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~---~~~~~~f~~gvpGS  129 (359)
T d1m6ex_          53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN---DVDGVCFINGVPGS  129 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC---SCTTCEEEEEEESC
T ss_pred             eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccc---cCCCCeEEEecCCc
Confidence            5799999999998853321            1      1247777775443333333332210   01111  3334556


Q ss_pred             CCCCCCCCCCeeEEEecchhhhH
Q psy7837         193 GRRGYPDAAPYDVIYISQAIRDI  215 (299)
Q Consensus       193 ~~~~~~~~~~fD~v~~~~~~~~~  215 (299)
                      ....+.+.++.|++++...++|+
T Consensus       130 FY~rLfP~~Slh~~~Ss~alHWL  152 (359)
T d1m6ex_         130 FYGRLFPRNTLHFIHSSYSLMWL  152 (359)
T ss_dssp             SSSCCSCTTCBSCEEEESCTTBC
T ss_pred             hhhhcCCCCceEEeeehhhhhhh
Confidence            66556666899999998877653

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.96  E-value=0.19  Score=40.62  Aligned_cols=47  Identities=19%  Similarity=0.201  Sum_probs=38.9

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK  113 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~  113 (299)
                      .....+||.+|+|.|.....+.+. . ..++..+|+++.+++.+++.+.
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~-~-~~~v~~VEiD~~Vi~~a~~~f~  116 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLIK  116 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHTC
T ss_pred             CCCCceEEEecCCchHHHHHHHHh-C-CceEEEecCCHHHHHHHHHhhh
Confidence            466789999999999988877653 2 3589999999999999988663

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.90  E-value=0.096  Score=43.36  Aligned_cols=72  Identities=17%  Similarity=0.122  Sum_probs=51.8

Q ss_pred             CCeEEEEcCCCcHHHHHHHHcCC--e-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC---CCCeeE
Q psy7837         132 GSKVLDIGSGSGYLSALFAYMGA--K-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD---AAPYDV  205 (299)
Q Consensus       132 ~~~vLDiG~G~G~~~~~la~~~~--~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~  205 (299)
                      ..+|+|+.||.|.+...+...|.  + +.++|+++.+++..+.|..          +..++.+|+.+....   ...+|+
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~----------~~~~~~~di~~~~~~~~~~~~~Dl   71 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP----------HTQLLAKTIEGITLEEFDRLSFDM   71 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT----------TSCEECSCGGGCCHHHHHHHCCSE
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC----------CCCcccCchhhCCHhHcCCCCccE
Confidence            45899999999999988877775  4 7799999999998887742          334556676643221   135899


Q ss_pred             EEecchhh
Q psy7837         206 IYISQAIR  213 (299)
Q Consensus       206 v~~~~~~~  213 (299)
                      ++...+..
T Consensus        72 l~ggpPCq   79 (343)
T d1g55a_          72 ILMSPPCQ   79 (343)
T ss_dssp             EEECCC--
T ss_pred             EEeecccc
Confidence            99888753

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=91.87  E-value=0.099  Score=39.22  Aligned_cols=48  Identities=17%  Similarity=0.254  Sum_probs=40.8

Q ss_pred             ccCCCCCEEEEEccCC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837          63 GHLKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        63 ~~~~~g~~vldiG~G~-G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~  111 (299)
                      +.+++|++|+-+|||. |.++..+++..|. ..++..|.++.-.+.+++.
T Consensus        24 a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga-~~Vi~~d~~~~r~~~a~~~   72 (174)
T d1e3ia2          24 AKVTPGSTCAVFGLGCVGLSAIIGCKIAGA-SRIIAIDINGEKFPKAKAL   72 (174)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHT
T ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHhCC-ceeeeeccchHHHHHHHHh
Confidence            4589999999999999 8999999998874 6799999999877777664

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.69  E-value=0.23  Score=36.74  Aligned_cols=47  Identities=28%  Similarity=0.413  Sum_probs=38.9

Q ss_pred             cCCCCCEEEEEccCC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837          64 HLKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        64 ~~~~g~~vldiG~G~-G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~  111 (299)
                      .+++|++|+-+|+|+ |.++..+++..|. .+++.+|.++.-.+.+++.
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~-~~Vi~~d~~~~rl~~a~~~   70 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAKEI   70 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcCC-ceEEeccCCHHHHHHHHHh
Confidence            489999999999987 6777788887764 4899999999988877653

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=91.66  E-value=0.1  Score=39.12  Aligned_cols=47  Identities=13%  Similarity=0.215  Sum_probs=39.0

Q ss_pred             cCCCCCEEEEEccCC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837          64 HLKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        64 ~~~~g~~vldiG~G~-G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~  111 (299)
                      .+++|++||-+|||. |.++..+++..+. .+|+++|.++.-.+.+++.
T Consensus        24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G~-~~Vi~~d~~~~kl~~a~~l   71 (174)
T d1p0fa2          24 KVTPGSTCAVFGLGGVGFSAIVGCKAAGA-SRIIGVGTHKDKFPKAIEL   71 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcCC-ceeeccCChHHHHHHHHHc
Confidence            589999999999988 5666778887763 5899999999888888764

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=91.63  E-value=0.11  Score=41.24  Aligned_cols=37  Identities=11%  Similarity=0.082  Sum_probs=30.7

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPE  103 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~  103 (299)
                      ....+|+|||||+|.++..+++... +-+++.+|..+.
T Consensus        80 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dlp~v  116 (243)
T d1kyza2          80 EGLKSLVDVGGGTGAVINTIVSKYP-TIKGINFDLPHV  116 (243)
T ss_dssp             SSCSEEEEETCTTSHHHHHHHHHCT-TSEEEEEECTTT
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCC-CCeEEEcccHHh
Confidence            4457899999999999999999874 578889998553

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=91.55  E-value=0.12  Score=44.51  Aligned_cols=32  Identities=16%  Similarity=0.013  Sum_probs=24.4

Q ss_pred             HHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc
Q psy7837         121 KRINFYGHLVYGSKVLDIGSGSGYLSALFAYM  152 (299)
Q Consensus       121 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~  152 (299)
                      +.+..+....++.+|+|..||+|.+...+.+.
T Consensus       152 ~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~  183 (425)
T d2okca1         152 QAMVDCINPQMGETVCDPACGTGGFLLTAYDY  183 (425)
T ss_dssp             HHHHHHHCCCTTCCEEETTCTTCHHHHHHHHH
T ss_pred             HhhheeccCcccceeeccccccCccHHHHHHH
Confidence            33444455567899999999999999887654

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.55  E-value=0.47  Score=37.39  Aligned_cols=76  Identities=17%  Similarity=0.185  Sum_probs=59.5

Q ss_pred             CCCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---------
Q psy7837         130 VYGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---------  197 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---------  197 (299)
                      ..|+.+|-.|+++|.   ++..+++.|++|+.+|.+++.++...+.+..      ...++.++.+|..+..         
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~------~~~~~~~~~~Dvs~~~~v~~~~~~i   78 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKG------LGAKVHTFVVDCSNREDIYSSAKKV   78 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH------TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh------cCCcEEEEEeeCCCHHHHHHHHHHH
Confidence            458899999999884   5567788899999999999999888888765      3457889999988521         


Q ss_pred             -CCCCCeeEEEecch
Q psy7837         198 -PDAAPYDVIYISQA  211 (299)
Q Consensus       198 -~~~~~fD~v~~~~~  211 (299)
                       ...+..|+++.++.
T Consensus        79 ~~~~g~idilinnag   93 (244)
T d1yb1a_          79 KAEIGDVSILVNNAG   93 (244)
T ss_dssp             HHHTCCCSEEEECCC
T ss_pred             HHHcCCCceeEeecc
Confidence             12367899988775

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.35  E-value=0.46  Score=34.86  Aligned_cols=88  Identities=17%  Similarity=0.208  Sum_probs=54.2

Q ss_pred             eEEEEcCC--CcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837         134 KVLDIGSG--SGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS  209 (299)
Q Consensus       134 ~vLDiG~G--~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  209 (299)
                      +|+=||||  -++++..+.+.|  .+|+++|.++..++.+++.-        ...   ....+....  .....|+|+..
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~--------~~~---~~~~~~~~~--~~~~~dlIila   69 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG--------IID---EGTTSIAKV--EDFSPDFVMLS   69 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT--------SCS---EEESCGGGG--GGTCCSEEEEC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhh--------cch---hhhhhhhhh--hcccccccccc
Confidence            58889998  344555666666  47999999999999887641        111   111111111  11347999888


Q ss_pred             chhhh---HHHHHHHhccCCcEEEEEecC
Q psy7837         210 QAIRD---IPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       210 ~~~~~---~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      .+...   +.+++...++++.. ++.+..
T Consensus        70 ~p~~~~~~vl~~l~~~~~~~~i-i~d~~s   97 (171)
T d2g5ca2          70 SPVRTFREIAKKLSYILSEDAT-VTDQGS   97 (171)
T ss_dssp             SCHHHHHHHHHHHHHHSCTTCE-EEECCS
T ss_pred             CCchhhhhhhhhhhcccccccc-cccccc
Confidence            87654   44577788877654 444444

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.22  E-value=0.14  Score=38.47  Aligned_cols=48  Identities=19%  Similarity=0.232  Sum_probs=39.4

Q ss_pred             cCCCCCEEEEEccCC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Q psy7837          64 HLKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV  112 (299)
Q Consensus        64 ~~~~g~~vldiG~G~-G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l  112 (299)
                      .+++|++|+-+|||. |.++..+++..+. .+|+++|.++...+.+++.-
T Consensus        26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G~-~~Vi~vd~~~~kl~~Ak~~G   74 (176)
T d1d1ta2          26 KVKPGSTCVVFGLGGVGLSVIMGCKSAGA-SRIIGIDLNKDKFEKAMAVG   74 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHHT
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcCC-ceEEEecCcHHHHHHHHhcC
Confidence            489999999999987 5666677777653 58999999999999888763

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=91.03  E-value=0.56  Score=37.22  Aligned_cols=76  Identities=14%  Similarity=0.171  Sum_probs=57.9

Q ss_pred             CCCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---------
Q psy7837         130 VYGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---------  197 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---------  197 (299)
                      ..|+++|-.|+++|.   .+..|++.|++|+.+|.+++.++.+.+.++.      ...++.++.+|+.+..         
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~------~g~~~~~~~~Dv~~~~~v~~~~~~~   76 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVRE------KGVEARSYVCDVTSEEAVIGTVDSV   76 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT------TTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh------cCCcEEEEEccCCCHHHHHHHHHHH
Confidence            468999999988874   4556778899999999999999988888766      2357888999987421         


Q ss_pred             -CCCCCeeEEEecch
Q psy7837         198 -PDAAPYDVIYISQA  211 (299)
Q Consensus       198 -~~~~~fD~v~~~~~  211 (299)
                       ...+..|+++.+..
T Consensus        77 ~~~~g~iDilVnnaG   91 (260)
T d1zema1          77 VRDFGKIDFLFNNAG   91 (260)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCCCeehhhhc
Confidence             01267999987654

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=91.01  E-value=0.46  Score=37.49  Aligned_cols=71  Identities=24%  Similarity=0.142  Sum_probs=49.3

Q ss_pred             cCCCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-----C--
Q psy7837         129 LVYGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-----P--  198 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-----~--  198 (299)
                      ...|+++|-.|++.|.   .+..+++.|++|+.+|.+++..+.+++.            +..++..|+.+..     .  
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~------------~~~~~~~Dv~~~~~v~~~~~~   69 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAI------------GGAFFQVDLEDERERVRFVEE   69 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHH------------TCEEEECCTTCHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc------------CCeEEEEeCCCHHHHHHHHHH
Confidence            3568999999988774   3446677899999999998765544322            3456788887421     0  


Q ss_pred             ---CCCCeeEEEecch
Q psy7837         199 ---DAAPYDVIYISQA  211 (299)
Q Consensus       199 ---~~~~fD~v~~~~~  211 (299)
                         ..++.|+++.++.
T Consensus        70 ~~~~~G~iDiLVnnAG   85 (248)
T d2d1ya1          70 AAYALGRVDVLVNNAA   85 (248)
T ss_dssp             HHHHHSCCCEEEECCC
T ss_pred             HHHhcCCCCeEEEeCc
Confidence               1167999987764

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=90.85  E-value=0.77  Score=35.91  Aligned_cols=73  Identities=23%  Similarity=0.234  Sum_probs=52.9

Q ss_pred             CCCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC--------
Q psy7837         130 VYGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP--------  198 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--------  198 (299)
                      ..|+++|-.|++.|.   .+..+++.|++|+.++.+...++...+.         ...++.++++|..+...        
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~---------~~~~~~~~~~Dls~~~~i~~~~~~i   73 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAA---------LEAEAIAVVADVSDPKAVEAVFAEA   73 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT---------CCSSEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH---------cCCceEEEEecCCCHHHHHHHHHHH
Confidence            568999999999874   4445677799999999998876655443         33578889999874210        


Q ss_pred             --CCCCeeEEEecch
Q psy7837         199 --DAAPYDVIYISQA  211 (299)
Q Consensus       199 --~~~~fD~v~~~~~  211 (299)
                        ..++.|+++.+..
T Consensus        74 ~~~~g~iDiLinnAg   88 (241)
T d2a4ka1          74 LEEFGRLHGVAHFAG   88 (241)
T ss_dssp             HHHHSCCCEEEEGGG
T ss_pred             HHHhCCccEeccccc
Confidence              1167999988765

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.83  E-value=0.22  Score=37.03  Aligned_cols=47  Identities=17%  Similarity=0.318  Sum_probs=38.1

Q ss_pred             cCCCCCEEEEEccCC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837          64 HLKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        64 ~~~~g~~vldiG~G~-G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~  111 (299)
                      .+++|++||-+|||. |.++..+++..+. .+++..|.++.-.+.+++.
T Consensus        25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~~a~~~   72 (174)
T d1f8fa2          25 KVTPASSFVTWGAGAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQL   72 (174)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCHHHhhhhhccccccc-ceeeeeccHHHHHHHHHHc
Confidence            489999999999987 6677788888875 4788899999888877653

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=90.35  E-value=0.18  Score=40.02  Aligned_cols=36  Identities=17%  Similarity=0.087  Sum_probs=30.1

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCC
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHI  101 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~  101 (299)
                      .....+|||||||+|.++..+++... .-+++.+|..
T Consensus        79 f~~~~~vlDiGGG~G~~~~~l~~~~P-~l~~~v~Dlp  114 (244)
T d1fp1d2          79 FEGISTLVDVGGGSGRNLELIISKYP-LIKGINFDLP  114 (244)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECH
T ss_pred             ccCCcEEEEecCCCcHHHHHHHHHCC-CCeEEEecch
Confidence            35567999999999999999999874 5688888874

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=90.24  E-value=0.73  Score=36.48  Aligned_cols=78  Identities=18%  Similarity=0.115  Sum_probs=58.2

Q ss_pred             CCCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC--------
Q psy7837         130 VYGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP--------  198 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--------  198 (299)
                      ..|+++|-.|+++|.   .+..+++.|++|+.+|.+++.++.+.+.+...    ....++.++.+|+.+...        
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~----~~~~~~~~~~~Dvt~~~~v~~~~~~~   77 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLET----APDAEVLTTVADVSDEAQVEAYVTAT   77 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH----CTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh----CCCCeEEEEeccCCCHHHHHHHHHHH
Confidence            358899999998885   45677888999999999999888877766542    234578889999874211        


Q ss_pred             --CCCCeeEEEecch
Q psy7837         199 --DAAPYDVIYISQA  211 (299)
Q Consensus       199 --~~~~fD~v~~~~~  211 (299)
                        ..++.|+++.++.
T Consensus        78 ~~~~G~iDiLVnnAG   92 (258)
T d1iy8a_          78 TERFGRIDGFFNNAG   92 (258)
T ss_dssp             HHHHSCCSEEEECCC
T ss_pred             HHHhCCCCEEEECCc
Confidence              1267999987764

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.10  E-value=0.48  Score=37.79  Aligned_cols=79  Identities=16%  Similarity=0.222  Sum_probs=57.6

Q ss_pred             ccCCCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC------
Q psy7837         128 HLVYGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP------  198 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------  198 (299)
                      .+.+|+++|-.|+++|.   ++..+++.|++|+.++.+++.++.+.+....     .......+...|......      
T Consensus        10 ~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~~   84 (269)
T d1xu9a_          10 EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLE-----LGAASAHYIAGTMEDMTFAEQFVA   84 (269)
T ss_dssp             GGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----HTCSEEEEEECCTTCHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhh-----hhcccchhhhhhhhhHHHHHHHHH
Confidence            34679999999999984   4556778899999999999999888776655     345567777777653110      


Q ss_pred             ----CCCCeeEEEecch
Q psy7837         199 ----DAAPYDVIYISQA  211 (299)
Q Consensus       199 ----~~~~fD~v~~~~~  211 (299)
                          ..+..|+++.++.
T Consensus        85 ~~~~~~g~~~~li~nag  101 (269)
T d1xu9a_          85 QAGKLMGGLDMLILNHI  101 (269)
T ss_dssp             HHHHHHTSCSEEEECCC
T ss_pred             HHHHHhCCccccccccc
Confidence                1256788877664

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=90.02  E-value=0.79  Score=36.28  Aligned_cols=76  Identities=17%  Similarity=0.180  Sum_probs=56.9

Q ss_pred             CCCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---------
Q psy7837         130 VYGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---------  197 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---------  197 (299)
                      .+|+++|-.|+..|.   .+..+++.|++|+.++.++..++.+.+.++.      ...++.++.+|.....         
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~------~~~~~~~~~~D~s~~~~~~~~~~~~   77 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWRE------KGLNVEGSVCDLLSRTERDKLMQTV   77 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH------TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh------cCCCceEEEeecCCHHHHHHHHHHH
Confidence            468999999998773   4556677899999999999988888887766      3457788889987421         


Q ss_pred             -C-CCCCeeEEEecch
Q psy7837         198 -P-DAAPYDVIYISQA  211 (299)
Q Consensus       198 -~-~~~~fD~v~~~~~  211 (299)
                       . ..+..|+++.+..
T Consensus        78 ~~~~~g~idilinnag   93 (258)
T d1ae1a_          78 AHVFDGKLNILVNNAG   93 (258)
T ss_dssp             HHHTTSCCCEEEECCC
T ss_pred             HHHhCCCcEEEecccc
Confidence             0 1246888887654

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=90.00  E-value=0.57  Score=37.73  Aligned_cols=77  Identities=17%  Similarity=0.229  Sum_probs=56.5

Q ss_pred             CCCCeEEEEcCCCc---HHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---------
Q psy7837         130 VYGSKVLDIGSGSG---YLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---------  197 (299)
Q Consensus       130 ~~~~~vLDiG~G~G---~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---------  197 (299)
                      .+|+++|-.|+..|   ..+..+++.|++|+.+|.+...++...+.+..     ....++.++.+|.....         
T Consensus        23 l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~-----~~g~~~~~~~~D~~~~~~v~~~~~~~   97 (294)
T d1w6ua_          23 FQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISS-----QTGNKVHAIQCDVRDPDMVQNTVSEL   97 (294)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----HHSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHH-----hcCCceEEEEecccChHHHHHHhhhh
Confidence            56799999999887   34456677899999999999888777666654     24567788889987421         


Q ss_pred             -CCCCCeeEEEecch
Q psy7837         198 -PDAAPYDVIYISQA  211 (299)
Q Consensus       198 -~~~~~fD~v~~~~~  211 (299)
                       ...+..|+++.+..
T Consensus        98 ~~~~g~iDilvnnAg  112 (294)
T d1w6ua_          98 IKVAGHPNIVINNAA  112 (294)
T ss_dssp             HHHTCSCSEEEECCC
T ss_pred             hhhccccchhhhhhh
Confidence             11267899887764

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.89  E-value=0.92  Score=35.51  Aligned_cols=72  Identities=24%  Similarity=0.335  Sum_probs=52.9

Q ss_pred             CCCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC------CCCC
Q psy7837         130 VYGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG------YPDA  200 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~------~~~~  200 (299)
                      ..|+++|-.|+++|.   .+..+++.|++|+.+|.++..++...+.+          .++..++.|+.+.      ...-
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~----------~~~~~~~~Dv~d~~~v~~~~~~~   74 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC----------PGIEPVCVDLGDWEATERALGSV   74 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS----------TTCEEEECCTTCHHHHHHHHTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc----------CCCeEEEEeCCCHHHHHHHHHHh
Confidence            578999999998873   44567778999999999988777665432          3567788888641      1223


Q ss_pred             CCeeEEEecch
Q psy7837         201 APYDVIYISQA  211 (299)
Q Consensus       201 ~~fD~v~~~~~  211 (299)
                      +++|+++.++.
T Consensus        75 g~iDilVnnAg   85 (244)
T d1pr9a_          75 GPVDLLVNNAA   85 (244)
T ss_dssp             CCCCEEEECCC
T ss_pred             CCceEEEeccc
Confidence            67999987764

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=89.44  E-value=0.86  Score=36.53  Aligned_cols=49  Identities=16%  Similarity=0.157  Sum_probs=41.0

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .....+||-+|-|.|..+..+.+..+ ..++..+|+++.+++.+++.+..
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~~~-~~~i~~VEID~~Vi~~a~~~~~~  121 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPS  121 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHH
T ss_pred             cCCcceEEecCCCCcHHHHHHHhcCC-cceEEEecCCHHHHHHHHHhChh
Confidence            45668999999999999988876533 35899999999999999998754

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=89.43  E-value=0.83  Score=36.13  Aligned_cols=76  Identities=16%  Similarity=0.198  Sum_probs=57.2

Q ss_pred             CCCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---------
Q psy7837         130 VYGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---------  197 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---------  197 (299)
                      .+|+++|-.|+++|.   .+..+++.|++|+.+|.+++.++.+.+.++.      ...++.++.+|+.+..         
T Consensus         6 L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~------~g~~~~~~~~Dv~~~~~v~~~~~~~   79 (259)
T d2ae2a_           6 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRS------KGFKVEASVCDLSSRSERQELMNTV   79 (259)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH------TTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh------cCCCceEEEeeCCCHHHHHHHHHHH
Confidence            468999999998774   4556777899999999999999888887765      2457788899987411         


Q ss_pred             -CC-CCCeeEEEecch
Q psy7837         198 -PD-AAPYDVIYISQA  211 (299)
Q Consensus       198 -~~-~~~fD~v~~~~~  211 (299)
                       .. ..+.|+++.+..
T Consensus        80 ~~~~~~~idilvnnAG   95 (259)
T d2ae2a_          80 ANHFHGKLNILVNNAG   95 (259)
T ss_dssp             HHHTTTCCCEEEECCC
T ss_pred             HHHhCCCceEEEECCc
Confidence             01 136899988764

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=89.40  E-value=0.88  Score=36.12  Aligned_cols=75  Identities=19%  Similarity=0.295  Sum_probs=55.1

Q ss_pred             CCCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---------
Q psy7837         130 VYGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---------  197 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---------  197 (299)
                      ..|+++|-.|+++|.   .+..+++.|++|+.+|.+++.++.+.+.+..       ..++.++.+|+.+..         
T Consensus         4 L~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~-------~~~~~~~~~Dv~~~~~v~~~~~~~   76 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS-------PDVISFVHCDVTKDEDVRNLVDTT   76 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-------TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC-------CCceEEEEccCCCHHHHHHHHHHH
Confidence            468999999988874   3345667799999999999888887776643       346788899987421         


Q ss_pred             -CCCCCeeEEEecch
Q psy7837         198 -PDAAPYDVIYISQA  211 (299)
Q Consensus       198 -~~~~~fD~v~~~~~  211 (299)
                       ...++.|+++.+..
T Consensus        77 ~~~~g~iD~lVnnAG   91 (268)
T d2bgka1          77 IAKHGKLDIMFGNVG   91 (268)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCcceeccccc
Confidence             01257899987664

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.38  E-value=0.23  Score=36.83  Aligned_cols=47  Identities=15%  Similarity=0.253  Sum_probs=37.8

Q ss_pred             cCCCCCEEEEEccCC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837          64 HLKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        64 ~~~~g~~vldiG~G~-G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~  111 (299)
                      .++||++||-.|||. |.++..+++..+. ..++++|.++...+.+++.
T Consensus        25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G~-~~vi~~~~~~~k~~~ak~l   72 (176)
T d2fzwa2          25 KLEPGSVCAVFGLGGVGLAVIMGCKVAGA-SRIIGVDINKDKFARAKEF   72 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHH
T ss_pred             CCCCCCEEEEecchhHHHHHHHHHHHHhc-CceEEEcccHHHHHHHHHh
Confidence            489999999988875 5777778888763 5789999999888877754

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.35  E-value=0.32  Score=39.43  Aligned_cols=107  Identities=17%  Similarity=0.171  Sum_probs=81.1

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC-CCCCCCee
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG-YPDAAPYD  204 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD  204 (299)
                      ...++.+|||+.+|.|.=+..++..+  ..++++|.++.-+...++++++     .+..++.....|.... ......||
T Consensus        99 ~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r-----~g~~~~~~~~~~~~~~~~~~~~~fd  173 (284)
T d1sqga2          99 APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR-----LGMKATVKQGDGRYPSQWCGEQQFD  173 (284)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHH-----TTCCCEEEECCTTCTHHHHTTCCEE
T ss_pred             CccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhc-----ccccceeeeccccccchhccccccc
Confidence            45679999999999999999888763  5799999999999999999998     4555665555443321 12336799


Q ss_pred             EEEecchhh----------------------------hHHHHHHHhccCCcEEEEEecCCCCc
Q psy7837         205 VIYISQAIR----------------------------DIPWHIVDQLKLGGRMLFIKGHEDDI  239 (299)
Q Consensus       205 ~v~~~~~~~----------------------------~~~~~~~~~L~~gG~lv~~~~~~~~~  239 (299)
                      .|+++++..                            .+.+++.+.|++||+||.++-+-...
T Consensus       174 ~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~  236 (284)
T d1sqga2         174 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE  236 (284)
T ss_dssp             EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG
T ss_pred             EEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchh
Confidence            999998741                            23346788999999999987665444

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=89.34  E-value=0.51  Score=36.24  Aligned_cols=59  Identities=12%  Similarity=0.226  Sum_probs=44.7

Q ss_pred             HHHHHHHhc-cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          55 CLVLELLSG-HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        55 ~~~~~~l~~-~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +.+++.+.- ...++.+++|+|||.|.=+..++-. .++.+++-+|.+..-+...+.....
T Consensus        52 rHi~DSl~~~~~~~~~~ilDiGsGaG~PGi~laI~-~p~~~~~Lves~~KK~~FL~~~~~~  111 (207)
T d1jsxa_          52 RHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIV-RPEAHFTLLDSLGKRVRFLRQVQHE  111 (207)
T ss_dssp             HHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHhcchHhhhhhhcCCceeeeeccCCceeeehhhh-cccceEEEEecchHHHHHHHHHHHH
Confidence            444544421 2345789999999999998888864 4678999999999988887777665

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.31  E-value=0.69  Score=36.48  Aligned_cols=78  Identities=14%  Similarity=0.167  Sum_probs=57.0

Q ss_pred             CCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC---------
Q psy7837         131 YGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP---------  198 (299)
Q Consensus       131 ~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---------  198 (299)
                      .|+.+|-.|+++|.   .+..+++.|++|+.+|.+++.++.+.+.+...    ....++.++.+|+.+...         
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~----~~~~~~~~~~~Dv~~~~~v~~~~~~~~   77 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQ----FEPQKTLFIQCDVADQQQLRDTFRKVV   77 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT----SCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh----cCCCcEEEEEeecCCHHHHHHHHHHHH
Confidence            47889999988774   34456777999999999999888887776541    234578899999875210         


Q ss_pred             -CCCCeeEEEecchh
Q psy7837         199 -DAAPYDVIYISQAI  212 (299)
Q Consensus       199 -~~~~fD~v~~~~~~  212 (299)
                       ..+++|+++.++..
T Consensus        78 ~~~G~iDilVnnAg~   92 (254)
T d2gdza1          78 DHFGRLDILVNNAGV   92 (254)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHcCCcCeecccccc
Confidence             12679999887753

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.28  E-value=0.62  Score=37.18  Aligned_cols=79  Identities=20%  Similarity=0.182  Sum_probs=58.2

Q ss_pred             CCCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---------
Q psy7837         130 VYGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---------  197 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---------  197 (299)
                      ..|+++|-.|+++|.   .+..+++.|++|+.++.+++.++.+.+.++..+   ....++.++.+|+.+..         
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~---~~~~~~~~~~~Dvs~~~~v~~~~~~~   79 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSG---VSEKQVNSVVADVTTEDGQDQIINST   79 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT---CCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---CCCCceEEEEccCCCHHHHHHHHHHH
Confidence            468899999988874   445677889999999999999998888876621   12346889999987421         


Q ss_pred             -CCCCCeeEEEecch
Q psy7837         198 -PDAAPYDVIYISQA  211 (299)
Q Consensus       198 -~~~~~fD~v~~~~~  211 (299)
                       ...++.|+++.+..
T Consensus        80 ~~~~g~iDilvnnAG   94 (272)
T d1xkqa_          80 LKQFGKIDVLVNNAG   94 (272)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCceEEEeCCc
Confidence             01257899987653

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=89.23  E-value=0.77  Score=36.15  Aligned_cols=76  Identities=14%  Similarity=0.217  Sum_probs=56.7

Q ss_pred             CCCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---------
Q psy7837         130 VYGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---------  197 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---------  197 (299)
                      .+++.+|-.|+++|.   .+..+++.|++|+.++.+++.++.+.+.++.      ...++.++.+|+.+..         
T Consensus         8 lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~------~g~~~~~~~~Dvt~~~~v~~~~~~~   81 (251)
T d2c07a1           8 GENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKS------FGYESSGYAGDVSKKEEISEVINKI   81 (251)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHT------TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh------cCCcEEEEEccCCCHHHHHHHHHHH
Confidence            468889999988773   3345566799999999999999888888766      2347888999987421         


Q ss_pred             -CCCCCeeEEEecch
Q psy7837         198 -PDAAPYDVIYISQA  211 (299)
Q Consensus       198 -~~~~~fD~v~~~~~  211 (299)
                       ...++.|+++.+..
T Consensus        82 ~~~~g~iDilvnnag   96 (251)
T d2c07a1          82 LTEHKNVDILVNNAG   96 (251)
T ss_dssp             HHHCSCCCEEEECCC
T ss_pred             HHhcCCceeeeeccc
Confidence             12267999988765

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=89.12  E-value=0.34  Score=35.63  Aligned_cols=45  Identities=24%  Similarity=0.293  Sum_probs=35.9

Q ss_pred             cCCCCCEEEEEccCC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy7837          64 HLKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARK  110 (299)
Q Consensus        64 ~~~~g~~vldiG~G~-G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~  110 (299)
                      .+++|++||-+|+|. |.++..+++..|.  +++.++.++.-.+.+++
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak~~Ga--~~i~~~~~~~~~~~a~~   72 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAHAMGA--HVVAFTTSEAKREAAKA   72 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHH
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhhcccc--cchhhccchhHHHHHhc
Confidence            489999999999987 7888888888764  67788888776666654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.09  E-value=0.59  Score=32.73  Aligned_cols=83  Identities=13%  Similarity=0.202  Sum_probs=51.6

Q ss_pred             eEEEEcCCCcHHHHHH----HHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC----CCCCCeeE
Q psy7837         134 KVLDIGSGSGYLSALF----AYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY----PDAAPYDV  205 (299)
Q Consensus       134 ~vLDiG~G~G~~~~~l----a~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~  205 (299)
                      +|+-+|+  |.++..+    .+.|..|+.+|.+++.++.++..+           +..++.||..+..    ..-...|.
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-----------~~~vi~Gd~~~~~~l~~~~i~~a~~   68 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-----------DALVINGDCTKIKTLEDAGIEDADM   68 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----------SSEEEESCTTSHHHHHHTTTTTCSE
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-----------hhhhccCcccchhhhhhcChhhhhh
Confidence            5667776  5555544    455899999999999988776531           4678899987421    11245788


Q ss_pred             EEecchhhh---HHHHHHHhccCCcEE
Q psy7837         206 IYISQAIRD---IPWHIVDQLKLGGRM  229 (299)
Q Consensus       206 v~~~~~~~~---~~~~~~~~L~~gG~l  229 (299)
                      +++...-..   +.....+.+.+.-.+
T Consensus        69 vv~~t~~d~~N~~~~~~~k~~~~~~iI   95 (132)
T d1lssa_          69 YIAVTGKEEVNLMSSLLAKSYGINKTI   95 (132)
T ss_dssp             EEECCSCHHHHHHHHHHHHHTTCCCEE
T ss_pred             hcccCCcHHHHHHHHHHHHHcCCceEE
Confidence            776443322   223344556666443

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=89.01  E-value=2.1  Score=31.13  Aligned_cols=96  Identities=18%  Similarity=0.100  Sum_probs=56.1

Q ss_pred             CeEEEEcCCCc--HHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCC--CCCCC-CCCeeEEE
Q psy7837         133 SKVLDIGSGSG--YLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGR--RGYPD-AAPYDVIY  207 (299)
Q Consensus       133 ~~vLDiG~G~G--~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~--~~~~~-~~~fD~v~  207 (299)
                      +++.-+|+|..  .++..|++.|.+|+..|.++..++..++.-...    ..............  ....+ -...|+|+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~e~~~~aD~ii   77 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAII----AEGPGLAGTAHPDLLTSDIGLAVKDADVIL   77 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEE----EESSSCCEEECCSEEESCHHHHHTTCSEEE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCc----hhhhhhhhhhhhhhhhhhhHhHhcCCCEEE
Confidence            57788899843  344456778999999999998888776542110    00011111111110  00000 14589998


Q ss_pred             ecchh---hhHHHHHHHhccCCcEEEEE
Q psy7837         208 ISQAI---RDIPWHIVDQLKLGGRMLFI  232 (299)
Q Consensus       208 ~~~~~---~~~~~~~~~~L~~gG~lv~~  232 (299)
                      +....   ..+.+++...|+++-.+++.
T Consensus        78 i~v~~~~~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          78 IVVPAIHHASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             ECSCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             EEEchhHHHHHHHHhhhccCCCCEEEEe
Confidence            76554   34557888899988876654

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.98  E-value=0.78  Score=36.25  Aligned_cols=76  Identities=17%  Similarity=0.216  Sum_probs=56.8

Q ss_pred             CCCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC--------
Q psy7837         130 VYGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP--------  198 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--------  198 (299)
                      ..|+++|-.|++.|.   .+..+++.|++|+.++.+++.++.+.+.++.      ...++.++.+|+.+...        
T Consensus         9 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~------~g~~~~~~~~Dvs~~~~~~~~~~~~   82 (255)
T d1fmca_           9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQ------LGGQAFACRCDITSEQELSALADFA   82 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH------TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH------cCCcEEEEEccCCCHHHHHHHHHHH
Confidence            468999999988774   3345667799999999999998888888776      23478889999874210        


Q ss_pred             --CCCCeeEEEecch
Q psy7837         199 --DAAPYDVIYISQA  211 (299)
Q Consensus       199 --~~~~fD~v~~~~~  211 (299)
                        ..++.|+++.++.
T Consensus        83 ~~~~g~iDilvnnAG   97 (255)
T d1fmca_          83 ISKLGKVDILVNNAG   97 (255)
T ss_dssp             HHHHSSCCEEEECCC
T ss_pred             HHHcCCCCEeeeCCc
Confidence              1157999988764

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.65  E-value=0.75  Score=36.49  Aligned_cols=79  Identities=20%  Similarity=0.180  Sum_probs=57.4

Q ss_pred             CCCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---------
Q psy7837         130 VYGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---------  197 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---------  197 (299)
                      ..++.+|-.|++.|.   .+..+++.|++|+.++.+++.++.+.+.++..+   ....++.++.+|+.+..         
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~---~~~~~~~~~~~Dvt~~~~v~~~~~~~   79 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAG---VSEQNVNSVVADVTTDAGQDEILSTT   79 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT---CCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---CCcCceEEEEccCCCHHHHHHHHHHH
Confidence            358889999988774   344667789999999999999988888776521   12346889999987421         


Q ss_pred             -CCCCCeeEEEecch
Q psy7837         198 -PDAAPYDVIYISQA  211 (299)
Q Consensus       198 -~~~~~fD~v~~~~~  211 (299)
                       ...++.|+++.+..
T Consensus        80 ~~~~g~iDilvnnAG   94 (264)
T d1spxa_          80 LGKFGKLDILVNNAG   94 (264)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCCCEeecccc
Confidence             01267899887653

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.64  E-value=0.52  Score=32.17  Aligned_cols=92  Identities=10%  Similarity=0.004  Sum_probs=61.3

Q ss_pred             CCCCeEEEEcCCCcHH--HHHHHHcCCeEEEEeC--ChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837         130 VYGSKVLDIGSGSGYL--SALFAYMGAKVYAIEH--VKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV  205 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~--~~~la~~~~~v~~~D~--~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  205 (299)
                      ..+++||-+|.|.=..  ...+...|+.|+.++.  +++....+            ...++++..........  ..+++
T Consensus        10 l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~dl--~~~~l   75 (113)
T d1pjqa1          10 LRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWA------------NEGMLTLVEGPFDETLL--DSCWL   75 (113)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHH------------TTTSCEEEESSCCGGGG--TTCSE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHH------------hcCCceeeccCCCHHHh--CCCcE
Confidence            4689999999985332  2345566888777655  44433322            22467777766554322  34889


Q ss_pred             EEecchhhhHHHHHHHhccCCcEEEEEecC
Q psy7837         206 IYISQAIRDIPWHIVDQLKLGGRMLFIKGH  235 (299)
Q Consensus       206 v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  235 (299)
                      |+....-..+..++.+..++.|+++=....
T Consensus        76 v~~at~d~~~n~~i~~~a~~~~ilVNv~D~  105 (113)
T d1pjqa1          76 AIAATDDDTVNQRVSDAAESRRIFCNVVDA  105 (113)
T ss_dssp             EEECCSCHHHHHHHHHHHHHTTCEEEETTC
T ss_pred             EeecCCCHHHHHHHHHHHHHcCCEEEeCCC
Confidence            988877778888899999999988755443

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.63  E-value=0.73  Score=36.79  Aligned_cols=79  Identities=22%  Similarity=0.260  Sum_probs=58.1

Q ss_pred             CCCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC--------
Q psy7837         130 VYGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP--------  198 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--------  198 (299)
                      ..|+++|-.|+++|.   .+..+++.|++|+.+|.+++.++.+.+.+...+   ....++.++.+|+.+...        
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~---~~~~~~~~~~~Dv~~~~~v~~~~~~~   78 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAG---VPAEKINAVVADVTEASGQDDIINTT   78 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT---CCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcceEEEEeeCCCHHHHHHHHHHH
Confidence            358899999998884   445667789999999999999888888776621   123478899999874210        


Q ss_pred             --CCCCeeEEEecch
Q psy7837         199 --DAAPYDVIYISQA  211 (299)
Q Consensus       199 --~~~~fD~v~~~~~  211 (299)
                        ..++.|+++.+..
T Consensus        79 ~~~~G~iDilVnnAG   93 (274)
T d1xhla_          79 LAKFGKIDILVNNAG   93 (274)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCceEEEeecc
Confidence              1157899988753

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=88.62  E-value=1.1  Score=35.22  Aligned_cols=74  Identities=18%  Similarity=0.200  Sum_probs=55.2

Q ss_pred             CCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC----------C
Q psy7837         132 GSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY----------P  198 (299)
Q Consensus       132 ~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----------~  198 (299)
                      |+.+|-.|++.|.   .+..+++.|++|+.++.+++.++...+.++.      ...++.++.+|+.+..          .
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~------~g~~~~~~~~Dvs~~~~v~~~~~~~~~   75 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELRE------AGVEADGRTCDVRSVPEIEALVAAVVE   75 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH------TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh------cCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence            6677888887774   3445677799999999999999888888766      2357889999987421          1


Q ss_pred             CCCCeeEEEecch
Q psy7837         199 DAAPYDVIYISQA  211 (299)
Q Consensus       199 ~~~~fD~v~~~~~  211 (299)
                      ..++.|+++.++.
T Consensus        76 ~~g~iDilVnnAG   88 (257)
T d2rhca1          76 RYGPVDVLVNNAG   88 (257)
T ss_dssp             HTCSCSEEEECCC
T ss_pred             HhCCCCEEEeccc
Confidence            1267999997764

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.52  E-value=1  Score=35.36  Aligned_cols=74  Identities=16%  Similarity=0.113  Sum_probs=54.7

Q ss_pred             cCCCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-------
Q psy7837         129 LVYGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-------  198 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-------  198 (299)
                      ...|+++|-.|++.|.   .+..+++.|++|+.+|.+++.++...+.+.         .+..++.+|+.+...       
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~   73 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA---------DAARYVHLDVTQPAQWKAAVDT   73 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG---------GGEEEEECCTTCHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh---------CcceEEEeecCCHHHHHHHHHH
Confidence            3568999999998884   445677889999999999988777766543         367888999874210       


Q ss_pred             ---CCCCeeEEEecch
Q psy7837         199 ---DAAPYDVIYISQA  211 (299)
Q Consensus       199 ---~~~~fD~v~~~~~  211 (299)
                         ..+..|+++.++.
T Consensus        74 ~~~~~g~idilinnAG   89 (244)
T d1nffa_          74 AVTAFGGLHVLVNNAG   89 (244)
T ss_dssp             HHHHHSCCCEEEECCC
T ss_pred             HHHHhCCCeEEEECCc
Confidence               1157899987764

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=88.52  E-value=0.46  Score=40.10  Aligned_cols=47  Identities=15%  Similarity=0.138  Sum_probs=41.1

Q ss_pred             CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          67 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        67 ~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .+.+|||..||+|..+...+.-.+ ...|+..|+++..++.+++++..
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~l   91 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVML   91 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHh
Confidence            578999999999999997776655 35899999999999999999875

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.52  E-value=0.94  Score=35.81  Aligned_cols=76  Identities=13%  Similarity=0.110  Sum_probs=57.8

Q ss_pred             CCCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---------
Q psy7837         130 VYGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---------  197 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---------  197 (299)
                      .+|+++|-.|+++|.   .+..+++.|++|+.++.++..++.+.+.+..      ...++.++.+|+....         
T Consensus         6 LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~------~~~~~~~~~~Dv~~~~~v~~~~~~~   79 (259)
T d1xq1a_           6 LKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQK------KGFQVTGSVCDASLRPEREKLMQTV   79 (259)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH------TTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh------cCCceEEEeccCCCHHHHHHHHHHH
Confidence            368999999998885   4556778899999999999988888887766      2347889999987411         


Q ss_pred             C-C-CCCeeEEEecch
Q psy7837         198 P-D-AAPYDVIYISQA  211 (299)
Q Consensus       198 ~-~-~~~fD~v~~~~~  211 (299)
                      . . .+..|+++.+..
T Consensus        80 ~~~~~g~idilvnnAG   95 (259)
T d1xq1a_          80 SSMFGGKLDILINNLG   95 (259)
T ss_dssp             HHHHTTCCSEEEEECC
T ss_pred             HHHhCCCccccccccc
Confidence            0 1 156899988765

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=88.47  E-value=0.66  Score=34.82  Aligned_cols=78  Identities=17%  Similarity=0.167  Sum_probs=53.1

Q ss_pred             cccCCCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC---CCCC
Q psy7837         127 GHLVYGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG---YPDA  200 (299)
Q Consensus       127 ~~~~~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~  200 (299)
                      ....+++++|-.|++.|.   .+..+++.|++|+.++.+++.++...+.+...       .++.+...|....   ...-
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~   90 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR-------FKVNVTAAETADDASRAEAV   90 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH-------HTCCCEEEECCSHHHHHHHT
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhc-------cchhhhhhhcccHHHHHHHh
Confidence            345689999999988774   44466788999999999998888887776552       1333445554421   0011


Q ss_pred             CCeeEEEecch
Q psy7837         201 APYDVIYISQA  211 (299)
Q Consensus       201 ~~fD~v~~~~~  211 (299)
                      +..|+++.+..
T Consensus        91 ~~iDilin~Ag  101 (191)
T d1luaa1          91 KGAHFVFTAGA  101 (191)
T ss_dssp             TTCSEEEECCC
T ss_pred             cCcCeeeecCc
Confidence            45899988765

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.11  E-value=1.3  Score=34.45  Aligned_cols=72  Identities=25%  Similarity=0.278  Sum_probs=51.6

Q ss_pred             CCCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC------CCCC
Q psy7837         130 VYGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG------YPDA  200 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~------~~~~  200 (299)
                      ..|+++|-.|+++|.   .+..+++.|++|+.++.+++.++...+.+          .++..+..|..+.      ...-
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~----------~~~~~~~~Dv~~~~~v~~~~~~~   72 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC----------PGIEPVCVDLGDWDATEKALGGI   72 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS----------TTCEEEECCTTCHHHHHHHHTTC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc----------CCCeEEEEeCCCHHHHHHHHHHc
Confidence            368999999988874   34566778999999999987766655432          3567788888741      1123


Q ss_pred             CCeeEEEecch
Q psy7837         201 APYDVIYISQA  211 (299)
Q Consensus       201 ~~fD~v~~~~~  211 (299)
                      ++.|+++.++.
T Consensus        73 g~iDilVnnAg   83 (242)
T d1cyda_          73 GPVDLLVNNAA   83 (242)
T ss_dssp             CCCSEEEECCC
T ss_pred             CCCeEEEECCc
Confidence            67999987764

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.01  E-value=0.6  Score=37.95  Aligned_cols=48  Identities=31%  Similarity=0.180  Sum_probs=39.5

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      ....+||-+|.|.|.....+.+..+ ..++..+|+++.+++.+++.+..
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEIDp~Vi~~a~~~~~~  135 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQ  135 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHH
T ss_pred             CCCceEEEecCCchHHHHHHHhcCC-CceEEEecCCHHHHHHHHHHHHh
Confidence            4557999999999998887776432 35899999999999999987754

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.89  E-value=0.83  Score=33.15  Aligned_cols=45  Identities=27%  Similarity=0.387  Sum_probs=36.9

Q ss_pred             cCCCCCEEEEEccCC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy7837          64 HLKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARK  110 (299)
Q Consensus        64 ~~~~g~~vldiG~G~-G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~  110 (299)
                      .++||++||-.|+|+ |..+..+++..+.  +++.++.++.-.+.+++
T Consensus        24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g~--~v~~~~~~~~r~~~~k~   69 (168)
T d1rjwa2          24 GAKPGEWVAIYGIGGLGHVAVQYAKAMGL--NVVAVDIGDEKLELAKE   69 (168)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTC--EEEEECSCHHHHHHHHH
T ss_pred             CCCCCCEEEEeecccchhhhhHHHhcCCC--eEeccCCCHHHhhhhhh
Confidence            489999999999988 6666777877765  79999999988777665

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.67  E-value=1.7  Score=35.00  Aligned_cols=82  Identities=12%  Similarity=0.111  Sum_probs=57.7

Q ss_pred             cCCCCeEEEEcCCCcHH---HHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-------
Q psy7837         129 LVYGSKVLDIGSGSGYL---SALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-------  198 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~---~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-------  198 (299)
                      ...|+++|-.|+++|.-   +..+++.|++|+.++.+++.++.+.+.++..... ....++.++.+|+.+...       
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~-~~~~~~~~~~~Dvs~~~~v~~~~~~   87 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPP-TKQARVIPIQCNIRNEEEVNNLVKS   87 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCT-TCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhcc-ccCceEEEEeccCCCHHHHHHHHHH
Confidence            46789999999888753   3456777999999999998888777766541100 124578889999874210       


Q ss_pred             ---CCCCeeEEEecch
Q psy7837         199 ---DAAPYDVIYISQA  211 (299)
Q Consensus       199 ---~~~~fD~v~~~~~  211 (299)
                         ..+..|+++.++.
T Consensus        88 ~~~~~G~iDiLVnnAg  103 (297)
T d1yxma1          88 TLDTFGKINFLVNNGG  103 (297)
T ss_dssp             HHHHHSCCCEEEECCC
T ss_pred             HHHHhCCeEEEEeecc
Confidence               1257999987764

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=87.66  E-value=0.59  Score=38.29  Aligned_cols=45  Identities=20%  Similarity=0.257  Sum_probs=37.5

Q ss_pred             ccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837         128 HLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       128 ~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~  172 (299)
                      ...+|.+|||+.||.|.=+..++..   ...+++.|.++.-+...+++
T Consensus       113 ~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~  160 (313)
T d1ixka_         113 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLN  160 (313)
T ss_dssp             CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHH
T ss_pred             cCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHH
Confidence            4578999999999999988888765   45799999999888777654

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=87.55  E-value=2.1  Score=33.26  Aligned_cols=75  Identities=15%  Similarity=0.050  Sum_probs=50.9

Q ss_pred             cCCCCeEEEEcCCC--c---HHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC-------
Q psy7837         129 LVYGSKVLDIGSGS--G---YLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG-------  196 (299)
Q Consensus       129 ~~~~~~vLDiG~G~--G---~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-------  196 (299)
                      ...|+++|-.|+++  |   ..+..+++.|++|+.++.++...+.+.+....       ..+......|....       
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~   74 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQ-------LGSDIVLQCDVAEDASIDTMF   74 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHH-------TTCCCEEECCTTCHHHHHHHH
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhh-------cCCcceeecccchHHHHHHHH
Confidence            35689999999876  6   35567888899999999998877777666554       22344455554421       


Q ss_pred             ---CCCCCCeeEEEecc
Q psy7837         197 ---YPDAAPYDVIYISQ  210 (299)
Q Consensus       197 ---~~~~~~fD~v~~~~  210 (299)
                         ....+..|.++.+.
T Consensus        75 ~~~~~~~~~~d~~v~~a   91 (258)
T d1qsga_          75 AELGKVWPKFDGFVHSI   91 (258)
T ss_dssp             HHHHTTCSSEEEEEECC
T ss_pred             HHhhhcccccceEEEee
Confidence               12236688888665

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=87.44  E-value=1.2  Score=35.06  Aligned_cols=75  Identities=17%  Similarity=0.256  Sum_probs=56.0

Q ss_pred             CCCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC--------
Q psy7837         130 VYGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP--------  198 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--------  198 (299)
                      ..|+++|-.|+++|.   .+..+++.|++|+.++.+++.++.+.+.+..       ..++.++.+|+.+...        
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~~~   76 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT-------PDQIQFFQHDSSDEDGWTKLFDAT   76 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-------TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC-------CCcEEEEEccCCCHHHHHHHHHHH
Confidence            468999999988774   3456677899999999999888887776633       3578899999874210        


Q ss_pred             --CCCCeeEEEecch
Q psy7837         199 --DAAPYDVIYISQA  211 (299)
Q Consensus       199 --~~~~fD~v~~~~~  211 (299)
                        ..++.|+++.++.
T Consensus        77 ~~~~G~iDiLVnnAg   91 (251)
T d1zk4a1          77 EKAFGPVSTLVNNAG   91 (251)
T ss_dssp             HHHHSSCCEEEECCC
T ss_pred             HHHhCCceEEEeccc
Confidence              1267999987764

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=87.34  E-value=0.59  Score=39.66  Aligned_cols=48  Identities=21%  Similarity=0.148  Sum_probs=40.6

Q ss_pred             cCCCCeEEEEcCCCcHHHHHHHHc----CCeEEEEeCChHHHHHHHHHHHhc
Q psy7837         129 LVYGSKVLDIGSGSGYLSALFAYM----GAKVYAIEHVKNLCKRAMKNIRRG  176 (299)
Q Consensus       129 ~~~~~~vLDiG~G~G~~~~~la~~----~~~v~~~D~~~~~~~~a~~~~~~~  176 (299)
                      +.++..++|+|+-.|..+..++..    +.+|+++|+++...+..+++++.+
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n  261 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRY  261 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHT
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence            457789999999999988877643    358999999999999999998763

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=87.32  E-value=0.3  Score=38.31  Aligned_cols=34  Identities=18%  Similarity=0.250  Sum_probs=26.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHc------CCeEEEEeCCh
Q psy7837         130 VYGSKVLDIGSGSGYLSALFAYM------GAKVYAIEHVK  163 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~~~~~la~~------~~~v~~~D~~~  163 (299)
                      .++++|||+|++.|..+..++..      ..+++++|+++
T Consensus        79 ~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~  118 (232)
T d2bm8a1          79 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDL  118 (232)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCC
T ss_pred             hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcCh
Confidence            34789999999999887766532      46899999864

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=87.30  E-value=0.32  Score=38.47  Aligned_cols=35  Identities=11%  Similarity=0.220  Sum_probs=29.2

Q ss_pred             CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCC
Q psy7837          66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHI  101 (299)
Q Consensus        66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~  101 (299)
                      ....+|+|||||+|.++..+++... +-+++.+|..
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dlp  113 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETFP-KLKCIVFDRP  113 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECH
T ss_pred             cCceEEEEecCCccHHHHHHHHhCC-CCeEEEecCH
Confidence            4457899999999999999999875 4688889973

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=86.79  E-value=0.6  Score=36.96  Aligned_cols=77  Identities=13%  Similarity=0.144  Sum_probs=55.1

Q ss_pred             CCCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---------
Q psy7837         130 VYGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---------  197 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---------  197 (299)
                      ..|+++|-.|++.|.   .+..|++.|++|+.++.++..+..+.+.+..     ....++.++.+|+.+..         
T Consensus         7 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~-----~~g~~~~~~~~Dv~~~~~v~~~~~~~   81 (260)
T d1h5qa_           7 FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGK-----EFGVKTKAYQCDVSNTDIVTKTIQQI   81 (260)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHH-----HHTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH-----HhCCceEEEEccCCCHHHHHHHHHHH
Confidence            468899999988774   4456677899999999998776666555543     23457888999987421         


Q ss_pred             -CCCCCeeEEEecch
Q psy7837         198 -PDAAPYDVIYISQA  211 (299)
Q Consensus       198 -~~~~~fD~v~~~~~  211 (299)
                       ...++.|+++.++.
T Consensus        82 ~~~~g~iDilVnnAg   96 (260)
T d1h5qa_          82 DADLGPISGLIANAG   96 (260)
T ss_dssp             HHHSCSEEEEEECCC
T ss_pred             HHHhCCCcEeccccc
Confidence             12267999987764

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=86.67  E-value=0.67  Score=30.74  Aligned_cols=71  Identities=15%  Similarity=0.234  Sum_probs=44.7

Q ss_pred             cCCCCeEEEEcCC-CcHHH--HHHHHcCCeEEEEeCChH-HHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCee
Q psy7837         129 LVYGSKVLDIGSG-SGYLS--ALFAYMGAKVYAIEHVKN-LCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYD  204 (299)
Q Consensus       129 ~~~~~~vLDiG~G-~G~~~--~~la~~~~~v~~~D~~~~-~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  204 (299)
                      +...+++.=+|.| +|..+  ..+..+|..|++.|.... ..+...+            ..+.+..+......   ...|
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~------------~Gi~v~~g~~~~~i---~~~d   69 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQ------------AGAKIYIGHAEEHI---EGAS   69 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHH------------TTCEEEESCCGGGG---TTCS
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHH------------CCCeEEECCccccC---CCCC
Confidence            4456788888765 66544  566778999999999643 2222221            24556666544433   3478


Q ss_pred             EEEecchhhh
Q psy7837         205 VIYISQAIRD  214 (299)
Q Consensus       205 ~v~~~~~~~~  214 (299)
                      +|+..+....
T Consensus        70 ~vV~S~AI~~   79 (96)
T d1p3da1          70 VVVVSSAIKD   79 (96)
T ss_dssp             EEEECTTSCT
T ss_pred             EEEECCCcCC
Confidence            9988887654

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=86.66  E-value=0.84  Score=36.06  Aligned_cols=77  Identities=16%  Similarity=0.154  Sum_probs=55.4

Q ss_pred             CCCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCC-hHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-----C--
Q psy7837         130 VYGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHV-KNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-----P--  198 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~-~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-----~--  198 (299)
                      .+|+++|-.|+++|.   .+..|++.|++|+.++.+ +..++.+.+.+..     ....++.++.+|+.+..     .  
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~-----~~g~~~~~~~~Dv~~~~~v~~~~~~   76 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAA-----QHGVKVLYDGADLSKGEAVRGLVDN   76 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHH-----HHTSCEEEECCCTTSHHHHHHHHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHH-----hcCCcEEEEECCCCCHHHHHHHHHH
Confidence            468899988888875   445677889999999996 5667776666544     24457889999987421     0  


Q ss_pred             ---CCCCeeEEEecch
Q psy7837         199 ---DAAPYDVIYISQA  211 (299)
Q Consensus       199 ---~~~~fD~v~~~~~  211 (299)
                         ..++.|+++.++.
T Consensus        77 ~~~~~G~iDiLVnnAG   92 (260)
T d1x1ta1          77 AVRQMGRIDILVNNAG   92 (260)
T ss_dssp             HHHHHSCCSEEEECCC
T ss_pred             HHHHhCCCcEEEeecc
Confidence               1167999988764

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=86.51  E-value=1  Score=32.92  Aligned_cols=45  Identities=22%  Similarity=0.221  Sum_probs=34.1

Q ss_pred             ccCCCCeEEEEcCC-CcHHHHHHHHc-CC-eEEEEeCChHHHHHHHHH
Q psy7837         128 HLVYGSKVLDIGSG-SGYLSALFAYM-GA-KVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       128 ~~~~~~~vLDiG~G-~G~~~~~la~~-~~-~v~~~D~~~~~~~~a~~~  172 (299)
                      .++++.+||-+|+| .|..+..+++. |+ .|+++|.+++.++.+++.
T Consensus        29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~   76 (172)
T d1h2ba2          29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL   76 (172)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT
T ss_pred             ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc
Confidence            46889999999998 45555566554 64 689999999888877753

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=86.32  E-value=1  Score=38.13  Aligned_cols=50  Identities=14%  Similarity=0.126  Sum_probs=42.2

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGI-SGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~-~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      +++++.++|+|+-.|..+..++..... .++++++|.++...+..++++..
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~  260 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  260 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            457789999999999999888776543 46899999999999998888765

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=86.01  E-value=0.096  Score=34.79  Aligned_cols=72  Identities=21%  Similarity=0.181  Sum_probs=42.8

Q ss_pred             CCCCeEEEEcCC-CcHHH-HHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837         130 VYGSKVLDIGSG-SGYLS-ALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY  207 (299)
Q Consensus       130 ~~~~~vLDiG~G-~G~~~-~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  207 (299)
                      ..+++|+-+|-| +|..+ ..+.+.|.+|++.|..+.....  +         .....+.+..+.......  ..+|.|+
T Consensus         3 ~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~--~~~d~vi   69 (93)
T d2jfga1           3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGL--D---------KLPEAVERHTGSLNDEWL--MAADLIV   69 (93)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTG--G---------GSCTTSCEEESBCCHHHH--HHCSEEE
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhH--H---------HHhhccceeecccchhhh--ccCCEEE
Confidence            357899999999 66433 3566779999999985431110  0         112234444443221111  3589999


Q ss_pred             ecchhhh
Q psy7837         208 ISQAIRD  214 (299)
Q Consensus       208 ~~~~~~~  214 (299)
                      ..+.+..
T Consensus        70 ~SPGi~~   76 (93)
T d2jfga1          70 ASPGIAL   76 (93)
T ss_dssp             ECTTSCT
T ss_pred             ECCCCCC
Confidence            9887743

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=85.86  E-value=1.5  Score=34.25  Aligned_cols=72  Identities=17%  Similarity=0.138  Sum_probs=52.8

Q ss_pred             CCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC----------
Q psy7837         131 YGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY----------  197 (299)
Q Consensus       131 ~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----------  197 (299)
                      +|+++|-.|+++|.   .+..+++.|++|+.+|.+++.++...+.+..         +..++.+|..+..          
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~---------~~~~~~~Dv~~~~~v~~~~~~~~   73 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGA---------NGKGLMLNVTDPASIESVLEKIR   73 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG---------GEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCC---------CCcEEEEEecCHHHhhhhhhhhh
Confidence            58889999988774   4456677799999999999888877666533         5678888887421          


Q ss_pred             CCCCCeeEEEecch
Q psy7837         198 PDAAPYDVIYISQA  211 (299)
Q Consensus       198 ~~~~~fD~v~~~~~  211 (299)
                      ...++.|+++.++.
T Consensus        74 ~~~g~iDilVnnAg   87 (243)
T d1q7ba_          74 AEFGEVDILVNNAG   87 (243)
T ss_dssp             HHTCSCSEEEECCC
T ss_pred             cccCCcceehhhhh
Confidence            11267999987764

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=85.69  E-value=1.4  Score=34.60  Aligned_cols=73  Identities=12%  Similarity=0.139  Sum_probs=53.3

Q ss_pred             CCCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---------
Q psy7837         130 VYGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---------  197 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---------  197 (299)
                      .+|+++|-.|+++|.   .+..+++.|++|+.+|.+++.++...+.+         ..++.++.+|+.+..         
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dv~~~~~v~~~~~~~   73 (254)
T d1hdca_           3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL---------GDAARYQHLDVTIEEDWQRVVAYA   73 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT---------GGGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---------CCceEEEEcccCCHHHHHHHHHHH
Confidence            468999999999884   45567788999999999987766655432         347888999987421         


Q ss_pred             -CCCCCeeEEEecch
Q psy7837         198 -PDAAPYDVIYISQA  211 (299)
Q Consensus       198 -~~~~~fD~v~~~~~  211 (299)
                       ...++.|+++.++.
T Consensus        74 ~~~~g~iDilVnnAg   88 (254)
T d1hdca_          74 REEFGSVDGLVNNAG   88 (254)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCccEEEecCc
Confidence             01157898887764

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=85.68  E-value=0.53  Score=34.66  Aligned_cols=47  Identities=15%  Similarity=0.251  Sum_probs=35.4

Q ss_pred             cCCCCCEEEEEccCCC-HHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837          64 HLKYGDKVLEIGTGSG-YLTTLFGAMVGISGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        64 ~~~~g~~vldiG~G~G-~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~  111 (299)
                      .+++|++|+-+|+|.+ ..+..++...+ ...++++|.++.-.+.+++.
T Consensus        25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~g-~~~Vi~~~~~~~rl~~a~~~   72 (175)
T d1cdoa2          25 KVEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKVF   72 (175)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCCEEEEEecCCccchHHHHHHHHh-hchheeecchHHHHHHHHHc
Confidence            5999999999999984 44444555443 46899999999887776653

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=85.06  E-value=2.1  Score=33.48  Aligned_cols=72  Identities=18%  Similarity=0.138  Sum_probs=52.3

Q ss_pred             eEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC----------CCC
Q psy7837         134 KVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY----------PDA  200 (299)
Q Consensus       134 ~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----------~~~  200 (299)
                      .+|-.|+++|.   .+..+++.|++|+.+|.+++.++...+.++.      ...++.++.+|+.+..          ..-
T Consensus         3 ValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~------~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   76 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQ------AGGHAVAVKVDVSDRDQVFAAVEQARKTL   76 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH------TTCCEEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh------cCCcEEEEEeeCCCHHHHHHHHHHHHHHh
Confidence            35777877664   3345677799999999999999888887766      2357888999987421          112


Q ss_pred             CCeeEEEecch
Q psy7837         201 APYDVIYISQA  211 (299)
Q Consensus       201 ~~fD~v~~~~~  211 (299)
                      ++.|+++.++.
T Consensus        77 g~iDilVnnAG   87 (255)
T d1gega_          77 GGFDVIVNNAG   87 (255)
T ss_dssp             TCCCEEEECCC
T ss_pred             CCccEEEeccc
Confidence            67999987764

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=85.02  E-value=2  Score=34.16  Aligned_cols=72  Identities=22%  Similarity=0.201  Sum_probs=52.2

Q ss_pred             CCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC----------
Q psy7837         131 YGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY----------  197 (299)
Q Consensus       131 ~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----------  197 (299)
                      .|+++|-.|+++|.   .+..+++.|++|+.+|.+++.++...+..         ..++.++.+|.....          
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~---------~~~~~~~~~Dv~~~~~~~~~~~~~~   74 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDH---------GDNVLGIVGDVRSLEDQKQAASRCV   74 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---------GGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---------CCCeeEEecccccHHHHHHHHHHHH
Confidence            58999999988774   34466778999999999988877666543         236888889887421          


Q ss_pred             CCCCCeeEEEecch
Q psy7837         198 PDAAPYDVIYISQA  211 (299)
Q Consensus       198 ~~~~~fD~v~~~~~  211 (299)
                      ...++.|+++.++.
T Consensus        75 ~~~g~idilvnnAG   88 (276)
T d1bdba_          75 ARFGKIDTLIPNAG   88 (276)
T ss_dssp             HHHSCCCEEECCCC
T ss_pred             HHhCCccccccccc
Confidence            01257899887653

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.58  E-value=1.3  Score=35.57  Aligned_cols=49  Identities=20%  Similarity=0.163  Sum_probs=40.6

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .....+||-+|-|.|..+..+.+..+ ..++..+|+++.+++.+++.+..
T Consensus        76 ~~~pk~vLiiGgG~G~~~~~~l~~~~-~~~v~~vEiD~~Vv~~a~~~~~~  124 (285)
T d2o07a1          76 HPNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPG  124 (285)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHH
T ss_pred             CcCcCeEEEeCCCchHHHHHHHHcCC-cceeeeccCCHHHHHHHHhhchh
Confidence            34568999999999999888876533 35899999999999999998754

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.35  E-value=1.4  Score=35.44  Aligned_cols=49  Identities=16%  Similarity=0.169  Sum_probs=40.3

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .....+||-+|-|.|.....+.+..+ -.++..+|+++.+++.+++.+..
T Consensus        78 ~~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEiD~~Vi~~~~~~f~~  126 (290)
T d1xj5a_          78 IPNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPD  126 (290)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHH
T ss_pred             CCCCcceEEecCCchHHHHHHHhccc-ceeeEEecCCHHHHHHHHHhchh
Confidence            34557999999999999888876433 35899999999999999998754

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.76  E-value=2.5  Score=32.98  Aligned_cols=72  Identities=17%  Similarity=0.207  Sum_probs=52.6

Q ss_pred             CCCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---------
Q psy7837         130 VYGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---------  197 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---------  197 (299)
                      ..|+++|-.|+++|.   .+..+++.|++|+.+|.+++.++...+..          .+..++.+|+.+..         
T Consensus         4 l~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~----------~~~~~~~~Dvs~~~~v~~~~~~~   73 (250)
T d1ydea1           4 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL----------PGAVFILCDVTQEDDVKTLVSET   73 (250)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----------TTEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc----------CCCeEEEccCCCHHHHHHHHHHH
Confidence            468999999998874   44566778999999999988877665542          35778889987421         


Q ss_pred             -CCCCCeeEEEecch
Q psy7837         198 -PDAAPYDVIYISQA  211 (299)
Q Consensus       198 -~~~~~fD~v~~~~~  211 (299)
                       ...++.|+++.++.
T Consensus        74 ~~~~g~iDilVnnAG   88 (250)
T d1ydea1          74 IRRFGRLDCVVNNAG   88 (250)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHhcCCCCEEEeccc
Confidence             01167899988764

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=83.55  E-value=1.5  Score=34.37  Aligned_cols=73  Identities=16%  Similarity=0.170  Sum_probs=53.4

Q ss_pred             CCCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC--------
Q psy7837         130 VYGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP--------  198 (299)
Q Consensus       130 ~~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--------  198 (299)
                      .+|+++|-.|+++|.   .+..+++.|++|+.+|.+++.++.+.+.+         ..++.++.+|+.+...        
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~---------~~~~~~~~~Dvt~~~~v~~~~~~~   73 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI---------GPAACAIALDVTDQASIDRCVAEL   73 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH---------CTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---------CCceEEEEeeCCCHHHHHHHHHHH
Confidence            358899999988774   44566778999999999988777666543         3467888999874210        


Q ss_pred             --CCCCeeEEEecch
Q psy7837         199 --DAAPYDVIYISQA  211 (299)
Q Consensus       199 --~~~~fD~v~~~~~  211 (299)
                        ..+..|+++.++.
T Consensus        74 ~~~~g~iDilVnnAg   88 (256)
T d1k2wa_          74 LDRWGSIDILVNNAA   88 (256)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCccEEEeecc
Confidence              1157999988765

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.09  E-value=1  Score=33.88  Aligned_cols=100  Identities=12%  Similarity=0.086  Sum_probs=57.9

Q ss_pred             CeEEEEcCCCc--HHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcc---cCC--------------CCeEEEEcCC
Q psy7837         133 SKVLDIGSGSG--YLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAI---ALA--------------ENFEFVCADG  193 (299)
Q Consensus       133 ~~vLDiG~G~G--~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~---~~~--------------~~v~~~~~d~  193 (299)
                      ++|.-||+|+-  .++..++..|.+|+..|.+++.++.++++++..-..+   ...              .++.+. .|.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-~d~   83 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-TDA   83 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-SCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcccc-chh
Confidence            57888999843  3344567779999999999999988877665310000   000              112221 121


Q ss_pred             CCCCCCCCCeeEEEecchh-----hhHHHHHHHhccCCcEEEEEecCC
Q psy7837         194 RRGYPDAAPYDVIYISQAI-----RDIPWHIVDQLKLGGRMLFIKGHE  236 (299)
Q Consensus       194 ~~~~~~~~~fD~v~~~~~~-----~~~~~~~~~~L~~gG~lv~~~~~~  236 (299)
                      ...   -...|+|+-..+=     ..+..++.+.++++-+|.-.++.-
T Consensus        84 ~~a---~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l  128 (192)
T d1f0ya2          84 ASV---VHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSL  128 (192)
T ss_dssp             HHH---TTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSS
T ss_pred             Hhh---hcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCccc
Confidence            111   1336777754321     245567777788887776665543

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=82.64  E-value=0.69  Score=30.25  Aligned_cols=72  Identities=18%  Similarity=0.200  Sum_probs=39.0

Q ss_pred             EEEEcC-CCcH--HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecch
Q psy7837         135 VLDIGS-GSGY--LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQA  211 (299)
Q Consensus       135 vLDiG~-G~G~--~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~  211 (299)
                      |-=+|- |+|.  ++..+..+|..|++.|..+.....   +++.        ..+.+..+......   ...|+|+....
T Consensus         4 ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~---~L~~--------~Gi~i~~gh~~~~i---~~~d~vV~SsA   69 (89)
T d1j6ua1           4 IHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTA---YLRK--------LGIPIFVPHSADNW---YDPDLVIKTPA   69 (89)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHH---HHHH--------TTCCEESSCCTTSC---CCCSEEEECTT
T ss_pred             EEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHH---HHHH--------CCCeEEeeeccccc---CCCCEEEEecC
Confidence            334443 3454  344567789999999998633222   1332        13444444322222   34799998887


Q ss_pred             hhhHHHHHH
Q psy7837         212 IRDIPWHIV  220 (299)
Q Consensus       212 ~~~~~~~~~  220 (299)
                      ...-..++.
T Consensus        70 I~~~npel~   78 (89)
T d1j6ua1          70 VRDDNPEIV   78 (89)
T ss_dssp             CCTTCHHHH
T ss_pred             cCCCCHHHH
Confidence            754333333

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=81.69  E-value=1.5  Score=35.77  Aligned_cols=49  Identities=22%  Similarity=0.135  Sum_probs=40.1

Q ss_pred             CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837          65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA  114 (299)
Q Consensus        65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~  114 (299)
                      .....+||-+|.|.|.....+.+.- +-.++..+|+++.+++.+++.+..
T Consensus       104 ~~~pk~VLIiGgG~G~~~rellk~~-~v~~v~~VEID~~Vv~~a~~~~~~  152 (312)
T d2b2ca1         104 HPDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPG  152 (312)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTT
T ss_pred             CCCCCeEEEeCCCchHHHHHHHHcC-CcceEEEEcccHHHHHHHHhhchh
Confidence            4556799999999999988877643 235899999999999999987654

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.96  E-value=1.2  Score=32.68  Aligned_cols=45  Identities=22%  Similarity=0.290  Sum_probs=34.7

Q ss_pred             cCCCCCEEEEEcc--CCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy7837          64 HLKYGDKVLEIGT--GSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK  110 (299)
Q Consensus        64 ~~~~g~~vldiG~--G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~  110 (299)
                      .+++|++||-.|+  +.|..+..+++..|-  ++++++.+++-.+.+++
T Consensus        25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~--~vi~~~~~~~~~~~~~~   71 (174)
T d1yb5a2          25 CVKAGESVLVHGASGGVGLAACQIARAYGL--KILGTAGTEEGQKIVLQ   71 (174)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEEeccccccccccccccccCc--ccccccccccccccccc
Confidence            5899999999996  347788888888874  78888888766555543

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=80.85  E-value=3.8  Score=29.30  Aligned_cols=41  Identities=22%  Similarity=0.196  Sum_probs=30.4

Q ss_pred             CCeEEEEcCC-CcHHHH-HHHHcCCeEEEEeCChHHHHHHHHH
Q psy7837         132 GSKVLDIGSG-SGYLSA-LFAYMGAKVYAIEHVKNLCKRAMKN  172 (299)
Q Consensus       132 ~~~vLDiG~G-~G~~~~-~la~~~~~v~~~D~~~~~~~~a~~~  172 (299)
                      .++||-+|+| .|.... .|++.|.+|+.+|.+...++...++
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~   44 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAG   44 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhc
Confidence            5789999997 444333 4556689999999999877766543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=80.56  E-value=1.1  Score=32.98  Aligned_cols=47  Identities=13%  Similarity=0.254  Sum_probs=36.2

Q ss_pred             cCCCCCEEEEEccCC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837          64 HLKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        64 ~~~~g~~vldiG~G~-G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~  111 (299)
                      .+++|++||-+|+|. |..+..+++..+ ..+|+++|.++...+.+++.
T Consensus        25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g-~~~Vi~~~~~~~k~~~a~~~   72 (176)
T d2jhfa2          25 KVTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKEV   72 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHcC-CceEEeecCcHHHHHHHHHh
Confidence            499999999999976 345555666554 35899999999988877664

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=80.43  E-value=2.9  Score=32.42  Aligned_cols=70  Identities=20%  Similarity=0.156  Sum_probs=50.2

Q ss_pred             CCCeEEEEcCCCcH---HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC---------
Q psy7837         131 YGSKVLDIGSGSGY---LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP---------  198 (299)
Q Consensus       131 ~~~~vLDiG~G~G~---~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---------  198 (299)
                      .++++|-.|+++|.   .+..+++.|++|+.+|.++..++.+.+.+           +..++.+|+.+...         
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~-----------~~~~~~~Dv~~~~~v~~~~~~~~   72 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-----------GAHPVVMDVADPASVERGFAEAL   72 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----------TCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-----------CCeEEEEecCCHHHHHHHHHHHH
Confidence            58899999998884   34456777999999999988777665432           45678888874210         


Q ss_pred             -CCCCeeEEEecch
Q psy7837         199 -DAAPYDVIYISQA  211 (299)
Q Consensus       199 -~~~~fD~v~~~~~  211 (299)
                       ..+++|+++.++.
T Consensus        73 ~~~g~iDilVnnAG   86 (242)
T d1ulsa_          73 AHLGRLDGVVHYAG   86 (242)
T ss_dssp             HHHSSCCEEEECCC
T ss_pred             HhcCCceEEEECCc
Confidence             1157999887764

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=80.26  E-value=1.8  Score=31.69  Aligned_cols=46  Identities=15%  Similarity=0.203  Sum_probs=37.8

Q ss_pred             cCCCCCEEEEEccC--CCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837          64 HLKYGDKVLEIGTG--SGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR  111 (299)
Q Consensus        64 ~~~~g~~vldiG~G--~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~  111 (299)
                      .++||++||-.|++  .|.++..+++..|.  ++++++.++.-.+.+++.
T Consensus        25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga--~Vi~~~~s~~k~~~~~~l   72 (179)
T d1qora2          25 EIKPDEQFLFHAAAGGVGLIACQWAKALGA--KLIGTVGTAQKAQSALKA   72 (179)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHH
T ss_pred             CCCCCCEEEEEccccccchHHHHHHHHhCC--eEeecccchHHHHHHHhc
Confidence            48999999988655  47888899998874  899999999988877653