Psyllid ID: psy785

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTNDQ
Secondary Structure (PSIPRED)
cccEEccccHHHHHHHHHHHHHcccEEEEEEEcccHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccccccHHHHHHHHHHHcccEEEccccccccHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
EEEEEEEcccccccHHHHHHHccccEEEEEEEcccHHHHHcHHHHHHHHHHHHccccccEEEEEEccccccccccHHHHHHHHHHHHccEEEEccccccccHHHHHHHHHHc
Coil and Loop (DISEMBL)
MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILrvkdtddvpmvlvgnkcdleeervvgkEQGASLARAFACTFLETSAKAKVNSWLCVECTNDQ
Flexible Loop (DISEMBL)
mleildtagteQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILrvkdtddvpmVLVGnkcdleeervVGKEQGASLARAFACTFLETsakakvnswlcvectndq
Low Complexity Region (SEG)
MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTNDQ
Disordered region (IsUnstruct)
*********TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVEC****
Disordered Region (DISOPRED)
MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTNDQ
Disordered Region (DISEMBL)
MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTNDQ
Disordered Region (DISPRO)
MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTNDQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
P08645	184	Ras-like protein 3 OS=Dro	yes	N/A	0.901	0.548	0.900	1e-47
Q62636	184	Ras-related protein Rap-1	yes	N/A	0.901	0.548	0.862	4e-46
Q6TEN1	184	Ras-related protein Rap-1	no	N/A	0.901	0.548	0.862	5e-46
A6NIZ1	184	Ras-related protein Rap-1	yes	N/A	0.901	0.548	0.862	8e-46
Q5RDM6	184	Ras-related protein Rap-1	yes	N/A	0.901	0.548	0.862	9e-46
A5A6J7	184	Ras-related protein Rap-1	yes	N/A	0.901	0.548	0.862	9e-46
Q99JI6	184	Ras-related protein Rap-1	yes	N/A	0.901	0.548	0.862	9e-46
Q4R9D4	184	Ras-related protein Rap-1	N/A	N/A	0.901	0.548	0.862	9e-46
P61224	184	Ras-related protein Rap-1	yes	N/A	0.901	0.548	0.862	9e-46
Q5ZHX1	184	Ras-related protein Rap-1	yes	N/A	0.901	0.548	0.862	9e-46

>sp|P08645|RAS3_DROME Ras-like protein 3 OS=Drosophila melanogaster GN=R PE=2 SV=2

 Score =  187 bits (476), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/101 (90%), Positives = 94/101 (93%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           MLEILDTAGTEQFTAMRDLYMKNGQGF+LVYSITAQSTFNDL DLREQILRVKDTDDVPM
Sbjct: 52  MLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTDDVPM 111

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           VLVGNKCDLEEERVVGKE G +LA  F C F+ETSAKAKVN
Sbjct: 112 VLVGNKCDLEEERVVGKELGKNLATQFNCAFMETSAKAKVN 152

Ras proteins bind GDP/GTP and possess intrinsic GTPase activity. Plays a role in photoreceptor cell determination.
Drosophila melanogaster (taxid: 7227)

>sp|Q62636|RAP1B_RAT Ras-related protein Rap-1b OS=Rattus norvegicus GN=Rap1b PE=2 SV=2

 Score =  182 bits (463), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 88/102 (86%), Positives = 96/102 (94%), Gaps = 1/102 (0%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           MLEILDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDTDDVPM
Sbjct: 52  MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPM 111

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFA-CTFLETSAKAKVN 101
           +LVGNKCDLE+ERVVGKEQG +LAR ++ C FLE+SAK+K+N
Sbjct: 112 ILVGNKCDLEDERVVGKEQGQNLARQWSNCAFLESSAKSKIN 153

GTP-binding protein that possesses intrinsic GTPase activity. Contributes to the polarizing activity of KRIT1 and CDH5 in the establishment and maintenance of correct endothelial cell polarity and vascular lumen. Required for the localization of phosphorylated PRKCZ, PARD3 and TIAM1 to the cell junction.

Rattus norvegicus (taxid: 10116)

>sp|Q6TEN1|RAP1B_DANRE Ras-related protein Rap-1b OS=Danio rerio GN=rap1b PE=2 SV=1

 Score =  182 bits (462), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 88/102 (86%), Positives = 96/102 (94%), Gaps = 1/102 (0%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           MLEILDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDTDDVPM
Sbjct: 52  MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPM 111

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
           +LVGNKCDLE+ERVVGKEQG +LAR + +C FLE+SAK+K+N
Sbjct: 112 ILVGNKCDLEDERVVGKEQGQNLARQWNSCAFLESSAKSKIN 153

Danio rerio (taxid: 7955)

>sp|A6NIZ1|RP1BL_HUMAN Ras-related protein Rap-1b-like protein OS=Homo sapiens PE=2 SV=1

 Score =  181 bits (460), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 88/102 (86%), Positives = 95/102 (93%), Gaps = 1/102 (0%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           MLEILDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDTDDVPM
Sbjct: 52  MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPM 111

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
           +LVGNKCDLE+ERVVGKEQG +LAR +  C FLE+SAK+K+N
Sbjct: 112 ILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKIN 153

Homo sapiens (taxid: 9606)

>sp|Q5RDM6|RAP1B_PONAB Ras-related protein Rap-1b OS=Pongo abelii GN=RAP1B PE=2 SV=1

 Score =  181 bits (460), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 88/102 (86%), Positives = 95/102 (93%), Gaps = 1/102 (0%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           MLEILDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDTDDVPM
Sbjct: 52  MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPM 111

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
           +LVGNKCDLE+ERVVGKEQG +LAR +  C FLE+SAK+K+N
Sbjct: 112 ILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKIN 153

GTP-binding protein that possesses intrinsic GTPase activity. Contributes to the polarizing activity of KRIT1 and CDH5 in the establishment and maintenance of correct endothelial cell polarity and vascular lumen. Required for the localization of phosphorylated PRKCZ, PARD3 and TIAM1 to the cell junction.

Pongo abelii (taxid: 9601)

>sp|A5A6J7|RAP1B_PANTR Ras-related protein Rap-1b OS=Pan troglodytes GN=RAP1B PE=2 SV=1

 Score =  181 bits (460), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 88/102 (86%), Positives = 95/102 (93%), Gaps = 1/102 (0%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           MLEILDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDTDDVPM
Sbjct: 52  MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPM 111

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
           +LVGNKCDLE+ERVVGKEQG +LAR +  C FLE+SAK+K+N
Sbjct: 112 ILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKIN 153

GTP-binding protein that possesses intrinsic GTPase activity. Contributes to the polarizing activity of KRIT1 and CDH5 in the establishment and maintenance of correct endothelial cell polarity and vascular lumen. Required for the localization of phosphorylated PRKCZ, PARD3 and TIAM1 to the cell junction.

Pan troglodytes (taxid: 9598)

>sp|Q99JI6|RAP1B_MOUSE Ras-related protein Rap-1b OS=Mus musculus GN=Rap1b PE=2 SV=2

 Score =  181 bits (460), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 88/102 (86%), Positives = 95/102 (93%), Gaps = 1/102 (0%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           MLEILDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDTDDVPM
Sbjct: 52  MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPM 111

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
           +LVGNKCDLE+ERVVGKEQG +LAR +  C FLE+SAK+K+N
Sbjct: 112 ILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKIN 153

GTP-binding protein that possesses intrinsic GTPase activity. Contributes to the polarizing activity of KRIT1 and CDH5 in the establishment and maintenance of correct endothelial cell polarity and vascular lumen. Required for the localization of phosphorylated PRKCZ, PARD3 and TIAM1 to the cell junction.

Mus musculus (taxid: 10090)

>sp|Q4R9D4|RAP1B_MACFA Ras-related protein Rap-1b OS=Macaca fascicularis GN=RAP1B PE=2 SV=1

 Score =  181 bits (460), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 88/102 (86%), Positives = 95/102 (93%), Gaps = 1/102 (0%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           MLEILDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDTDDVPM
Sbjct: 52  MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPM 111

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
           +LVGNKCDLE+ERVVGKEQG +LAR +  C FLE+SAK+K+N
Sbjct: 112 ILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKIN 153

GTP-binding protein that possesses intrinsic GTPase activity. Contributes to the polarizing activity of KRIT1 and CDH5 in the establishment and maintenance of correct endothelial cell polarity and vascular lumen. Required for the localization of phosphorylated PRKCZ, PARD3 and TIAM1 to the cell junction.

Macaca fascicularis (taxid: 9541)

>sp|P61224|RAP1B_HUMAN Ras-related protein Rap-1b OS=Homo sapiens GN=RAP1B PE=1 SV=1

 Score =  181 bits (460), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 88/102 (86%), Positives = 95/102 (93%), Gaps = 1/102 (0%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           MLEILDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDTDDVPM
Sbjct: 52  MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPM 111

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
           +LVGNKCDLE+ERVVGKEQG +LAR +  C FLE+SAK+K+N
Sbjct: 112 ILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKIN 153

GTP-binding protein that possesses intrinsic GTPase activity. Contributes to the polarizing activity of KRIT1 and CDH5 in the establishment and maintenance of correct endothelial cell polarity and vascular lumen. Required for the localization of phosphorylated PRKCZ, PARD3 and TIAM1 to the cell junction.

Homo sapiens (taxid: 9606)

>sp|Q5ZHX1|RAP1B_CHICK Ras-related protein Rap-1b OS=Gallus gallus GN=RAP1B PE=2 SV=1

 Score =  181 bits (460), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 88/102 (86%), Positives = 95/102 (93%), Gaps = 1/102 (0%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           MLEILDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDTDDVPM
Sbjct: 52  MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPM 111

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
           +LVGNKCDLE+ERVVGKEQG +LAR +  C FLE+SAK+K+N
Sbjct: 112 ILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKIN 153

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
326320031	184	ras-related protein Rap-1A-like [Acyrtho	0.901	0.548	0.900	2e-47
91093591	184	PREDICTED: similar to Ras-like protein 3	0.901	0.548	0.900	3e-47
383856068	184	PREDICTED: ras-related protein Rap-1b-li	0.919	0.559	0.873	3e-47
307198418	175	Ras-like protein 3 [Harpegnathos saltato	0.901	0.577	0.891	3e-47
390349320	183	PREDICTED: ras-related protein Rap-1b-li	0.901	0.551	0.911	5e-47
307168408	184	Ras-like protein 3 [Camponotus floridanu	0.901	0.548	0.891	5e-47
328777746	184	PREDICTED: ras-related protein Rap-1b [A	0.901	0.548	0.891	6e-47
242010242	184	rap1 and, putative [Pediculus humanus co	0.901	0.548	0.900	8e-47
156548628	184	PREDICTED: ras-related protein Rap-1b-li	0.901	0.548	0.881	1e-46
195161099	133	GL24820 [Drosophila persimilis] gi|19411	0.901	0.759	0.910	1e-46

>gi|326320031|ref|NP_001191883.1| ras-related protein Rap-1A-like [Acyrthosiphon pisum]

 Score =  192 bits (488), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 91/101 (90%), Positives = 95/101 (94%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           MLEILDTAGTEQFTAMRDLYMKNGQGF+LVYSITAQSTFNDL DLREQILRVKDTDDVPM
Sbjct: 52  MLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTDDVPM 111

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           VLVGNKCDLEEERVVGKE G +LAR F C F+ETSAKAK+N
Sbjct: 112 VLVGNKCDLEEERVVGKEHGVNLARQFNCAFMETSAKAKIN 152

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91093591|ref|XP_969742.1| PREDICTED: similar to Ras-like protein 3 precursor (Protein roughened) [Tribolium castaneum] gi|270015604|gb|EFA12052.1| hypothetical protein TcasGA2_TC001470 [Tribolium castaneum]

 Score =  192 bits (487), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 91/101 (90%), Positives = 96/101 (95%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           MLEILDTAGTEQFTAMRDLYMKNGQGF+LVYSITAQSTFNDL DLREQILRVKDTDDVPM
Sbjct: 52  MLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTDDVPM 111

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           VLVGNKCDLEEERVVGKEQG +L+R F C F+ETSAKAK+N
Sbjct: 112 VLVGNKCDLEEERVVGKEQGNNLSRQFNCAFMETSAKAKIN 152

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856068|ref|XP_003703532.1| PREDICTED: ras-related protein Rap-1b-like isoform 1 [Megachile rotundata]

 Score =  192 bits (487), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 90/103 (87%), Positives = 97/103 (94%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           MLEILDTAGTEQFTAMRDLYMKNGQGF+LVYSITAQSTFNDL DLREQILRVKDTDDVPM
Sbjct: 52  MLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTDDVPM 111

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSW 103
           VLVGNKCDLE+ERVVGK+QG +LAR F C F+ETSAKAK+N +
Sbjct: 112 VLVGNKCDLEDERVVGKDQGVNLARQFNCAFMETSAKAKINVY 154

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307198418|gb|EFN79360.1| Ras-like protein 3 [Harpegnathos saltator]

 Score =  191 bits (486), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 90/101 (89%), Positives = 96/101 (95%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           MLEILDTAGTEQFTAMRDLYMKNGQGF+LVYSITAQSTFNDL DLREQILRVKDTDDVPM
Sbjct: 52  MLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTDDVPM 111

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           VLVGNKCDLE+ERVVGK+QG +LAR F C F+ETSAKAK+N
Sbjct: 112 VLVGNKCDLEDERVVGKDQGVNLARQFNCVFMETSAKAKIN 152

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390349320|ref|XP_785316.2| PREDICTED: ras-related protein Rap-1b-like [Strongylocentrotus purpuratus]

 Score =  191 bits (485), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 93/102 (91%), Positives = 98/102 (96%), Gaps = 1/102 (0%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           MLEILDTAGTEQFTAMRDLYMKNGQGF+LVYSITAQSTFNDL DLREQILRVKDTD+VPM
Sbjct: 52  MLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLHDLREQILRVKDTDNVPM 111

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
           VLVGNKCDLE+ERVVGK+QGASLAR F  CTFLETSAKAK+N
Sbjct: 112 VLVGNKCDLEDERVVGKDQGASLARQFNGCTFLETSAKAKIN 153

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|307168408|gb|EFN61568.1| Ras-like protein 3 [Camponotus floridanus] gi|322792276|gb|EFZ16260.1| hypothetical protein SINV_01504 [Solenopsis invicta] gi|332018208|gb|EGI58813.1| Ras-related protein Rap-1b [Acromyrmex echinatior]

 Score =  191 bits (484), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 90/101 (89%), Positives = 96/101 (95%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           MLEILDTAGTEQFTAMRDLYMKNGQGF+LVYSITAQSTFNDL DLREQILRVKDTDDVPM
Sbjct: 52  MLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTDDVPM 111

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           VLVGNKCDLE+ERVVGK+QG +LAR F C F+ETSAKAK+N
Sbjct: 112 VLVGNKCDLEDERVVGKDQGVNLARQFNCVFMETSAKAKIN 152

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328777746|ref|XP_396692.3| PREDICTED: ras-related protein Rap-1b [Apis mellifera] gi|340717290|ref|XP_003397118.1| PREDICTED: ras-related protein Rap-1b-like [Bombus terrestris] gi|350407287|ref|XP_003488045.1| PREDICTED: ras-related protein Rap-1b-like [Bombus impatiens] gi|380017382|ref|XP_003692636.1| PREDICTED: ras-related protein Rap-1b-like isoform 1 [Apis florea] gi|169668013|gb|ACA64426.1| RAS-like protein [Bombus ignitus]

 Score =  191 bits (484), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 90/101 (89%), Positives = 96/101 (95%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           MLEILDTAGTEQFTAMRDLYMKNGQGF+LVYSITAQSTFNDL DLREQILRVKDTDDVPM
Sbjct: 52  MLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTDDVPM 111

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           VLVGNKCDLE+ERVVGK+QG +LAR F C F+ETSAKAK+N
Sbjct: 112 VLVGNKCDLEDERVVGKDQGVNLARQFNCAFMETSAKAKIN 152

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010242|ref|XP_002425879.1| rap1 and, putative [Pediculus humanus corporis] gi|212509845|gb|EEB13141.1| rap1 and, putative [Pediculus humanus corporis]

 Score =  190 bits (483), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 91/101 (90%), Positives = 95/101 (94%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDL DLREQILRVKDTDDVPM
Sbjct: 52  MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLQDLREQILRVKDTDDVPM 111

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           VLVGNKCDLEEERVVGK+ G +LAR F C F+ETSAKAK+N
Sbjct: 112 VLVGNKCDLEEERVVGKDNGINLARQFNCAFMETSAKAKIN 152

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156548628|ref|XP_001608221.1| PREDICTED: ras-related protein Rap-1b-like [Nasonia vitripennis]

 Score =  190 bits (482), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 89/101 (88%), Positives = 96/101 (95%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           MLEILDTAGTEQFTAMRDLYMKNGQGF+LVYSITAQSTFNDL DLREQILRVKDTDDVPM
Sbjct: 52  MLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLHDLREQILRVKDTDDVPM 111

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           VLVGNKCDLE+ERVVGK+QG +LAR + C F+ETSAKAK+N
Sbjct: 112 VLVGNKCDLEDERVVGKDQGVNLARQYNCAFMETSAKAKIN 152

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195161099|ref|XP_002021407.1| GL24820 [Drosophila persimilis] gi|194118520|gb|EDW40563.1| GL24820 [Drosophila persimilis]

 Score =  190 bits (482), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/101 (91%), Positives = 94/101 (93%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           MLEILDTAGTEQFTAMRDLYMKNGQGF+LVYSITAQSTFNDL DLREQILRVKDTDDVPM
Sbjct: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTDDVPM 60

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           VLVGNKCDLEEERVVGKE G SLA  F C F+ETSAKAKVN
Sbjct: 61  VLVGNKCDLEEERVVGKELGKSLANQFNCAFMETSAKAKVN 101

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
FB|FBgn0004636	184	R "Roughened" [Drosophila mela	0.901	0.548	0.900	1e-43
WB|WBGene00004307	188	rap-1 [Caenorhabditis elegans	0.901	0.537	0.861	9.3e-43
RGD|620577	184	Rap1b "RAP1B, member of RAS on	0.901	0.548	0.862	1.9e-42
ZFIN|ZDB-GENE-030131-9662	184	rap1b "RAS related protein 1b"	0.901	0.548	0.862	1.9e-42
ZFIN|ZDB-GENE-040625-167	185	rap1a "RAP1A, member of RAS on	0.901	0.545	0.862	2.5e-42
UNIPROTKB|F1NSA8	188	RAP1A "Uncharacterized protein	0.901	0.537	0.862	3.2e-42
UNIPROTKB|Q5ZHX1	184	RAP1B "Ras-related protein Rap	0.901	0.548	0.862	4e-42
UNIPROTKB|P61223	184	RAP1B "Ras-related protein Rap	0.901	0.548	0.862	4e-42
UNIPROTKB|E2R2K4	184	RAP1B "Uncharacterized protein	0.901	0.548	0.862	4e-42
UNIPROTKB|A6NIZ1	184	A6NIZ1 "Ras-related protein Ra	0.901	0.548	0.862	4e-42

FB|FBgn0004636 R "Roughened" [Drosophila melanogaster (taxid:7227)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 91/101 (90%), Positives = 94/101 (93%)

Query:     1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
             MLEILDTAGTEQFTAMRDLYMKNGQGF+LVYSITAQSTFNDL DLREQILRVKDTDDVPM
Sbjct:    52 MLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTDDVPM 111

Query:    61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
             VLVGNKCDLEEERVVGKE G +LA  F C F+ETSAKAKVN
Sbjct:   112 VLVGNKCDLEEERVVGKELGKNLATQFNCAFMETSAKAKVN 152

GO:0003924 "GTPase activity" evidence=ISS;IDA

GO:0032486 "Rap protein signal transduction" evidence=IDA

GO:0019003 "GDP binding" evidence=NAS

GO:0005525 "GTP binding" evidence=IEA;NAS

GO:0001752 "compound eye photoreceptor fate commitment" evidence=NAS

GO:0030713 "ovarian follicle cell stalk formation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0046328 "regulation of JNK cascade" evidence=IGI;IMP

GO:0007391 "dorsal closure" evidence=IMP

GO:0007155 "cell adhesion" evidence=IMP

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0030718 "germ-line stem cell maintenance" evidence=IGI

GO:0006930 "substrate-dependent cell migration, cell extension" evidence=IMP

GO:0016476 "regulation of embryonic cell shape" evidence=IMP

GO:0035099 "hemocyte migration" evidence=IMP

GO:0005811 "lipid particle" evidence=IDA

GO:0042067 "establishment of ommatidial planar polarity" evidence=IMP

WB|WBGene00004307 rap-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 87/101 (86%), Positives = 95/101 (94%)

Query:     1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
             MLEILDTAGTEQFTAMRDLYMKNGQGF+LVYSITAQSTFNDL DLR+QILRVKDTD+VPM
Sbjct:    52 MLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLMDLRDQILRVKDTDEVPM 111

Query:    61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
             +LVGNKCDLE+ERVVGK+QG +LAR F   FLETSAKAK+N
Sbjct:   112 ILVGNKCDLEDERVVGKDQGQNLARQFGSAFLETSAKAKIN 152

GO:0003924 "GTPase activity" evidence=IEA;ISS

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0040002 "collagen and cuticulin-based cuticle development" evidence=IGI;IMP

GO:0008544 "epidermis development" evidence=IMP

RGD|620577 Rap1b "RAP1B, member of RAS oncogene family" [Rattus norvegicus (taxid:10116)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 88/102 (86%), Positives = 96/102 (94%)

Query:     1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
             MLEILDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDTDDVPM
Sbjct:    52 MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPM 111

Query:    61 VLVGNKCDLEEERVVGKEQGASLARAFA-CTFLETSAKAKVN 101
             +LVGNKCDLE+ERVVGKEQG +LAR ++ C FLE+SAK+K+N
Sbjct:   112 ILVGNKCDLEDERVVGKEQGQNLARQWSNCAFLESSAKSKIN 153

GO:0003924 "GTPase activity" evidence=ISO;ISS;TAS

GO:0005525 "GTP binding" evidence=ISO;ISS;TAS

GO:0005622 "intracellular" evidence=ISO

GO:0005811 "lipid particle" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005911 "cell-cell junction" evidence=ISO;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA;ISO

GO:0008283 "cell proliferation" evidence=IEA;ISO

GO:0019003 "GDP binding" evidence=ISO;ISS

GO:2000114 "regulation of establishment of cell polarity" evidence=ISO;ISS

ZFIN|ZDB-GENE-030131-9662 rap1b "RAS related protein 1b" [Danio rerio (taxid:7955)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 88/102 (86%), Positives = 96/102 (94%)

Query:     1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
             MLEILDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDTDDVPM
Sbjct:    52 MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPM 111

Query:    61 VLVGNKCDLEEERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
             +LVGNKCDLE+ERVVGKEQG +LAR + +C FLE+SAK+K+N
Sbjct:   112 ILVGNKCDLEDERVVGKEQGQNLARQWNSCAFLESSAKSKIN 153

GO:0005525 "GTP binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005911 "cell-cell junction" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0060026 "convergent extension" evidence=IMP

GO:0005829 "cytosol" evidence=IEA

ZFIN|ZDB-GENE-040625-167 rap1a "RAP1A, member of RAS oncogene family" [Danio rerio (taxid:7955)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 88/102 (86%), Positives = 96/102 (94%)

Query:     1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
             MLEILDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDT+DVPM
Sbjct:    52 MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPM 111

Query:    61 VLVGNKCDLEEERVVGKEQGASLARAFA-CTFLETSAKAKVN 101
             +LVGNKCDLEEERVVGKEQG +LAR ++ C FLE+SAK+K+N
Sbjct:   112 ILVGNKCDLEEERVVGKEQGQNLARQWSNCAFLESSAKSKIN 153

GO:0005525 "GTP binding" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1NSA8 RAP1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 88/102 (86%), Positives = 95/102 (93%)

Query:     1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
             MLEILDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDT+DVPM
Sbjct:    56 MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPM 115

Query:    61 VLVGNKCDLEEERVVGKEQGASLARAFA-CTFLETSAKAKVN 101
             +LVGNKCDLEEERVVGKEQG +LAR +  C FLE+SAK+K+N
Sbjct:   116 ILVGNKCDLEEERVVGKEQGQNLARQWCNCAFLESSAKSKIN 157

GO:0016020 "membrane" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0017016 "Ras GTPase binding" evidence=IEA

GO:0032045 "guanyl-nucleotide exchange factor complex" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q5ZHX1 RAP1B "Ras-related protein Rap-1b" [Gallus gallus (taxid:9031)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 88/102 (86%), Positives = 95/102 (93%)

Query:     1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
             MLEILDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDTDDVPM
Sbjct:    52 MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPM 111

Query:    61 VLVGNKCDLEEERVVGKEQGASLARAFA-CTFLETSAKAKVN 101
             +LVGNKCDLE+ERVVGKEQG +LAR +  C FLE+SAK+K+N
Sbjct:   112 ILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKIN 153

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005911 "cell-cell junction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:2000114 "regulation of establishment of cell polarity" evidence=IEA

UNIPROTKB|P61223 RAP1B "Ras-related protein Rap-1b" [Bos taurus (taxid:9913)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 88/102 (86%), Positives = 95/102 (93%)

Query:     1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
             MLEILDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDTDDVPM
Sbjct:    52 MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPM 111

Query:    61 VLVGNKCDLEEERVVGKEQGASLARAFA-CTFLETSAKAKVN 101
             +LVGNKCDLE+ERVVGKEQG +LAR +  C FLE+SAK+K+N
Sbjct:   112 ILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKIN 153

GO:0005525 "GTP binding" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:2000114 "regulation of establishment of cell polarity" evidence=ISS

GO:0005911 "cell-cell junction" evidence=ISS

GO:0016020 "membrane" evidence=TAS

GO:0005886 "plasma membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

UNIPROTKB|E2R2K4 RAP1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 88/102 (86%), Positives = 95/102 (93%)

Query:     1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
             MLEILDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDTDDVPM
Sbjct:    52 MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPM 111

Query:    61 VLVGNKCDLEEERVVGKEQGASLARAFA-CTFLETSAKAKVN 101
             +LVGNKCDLE+ERVVGKEQG +LAR +  C FLE+SAK+K+N
Sbjct:   112 ILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKIN 153

GO:2000114 "regulation of establishment of cell polarity" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005911 "cell-cell junction" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|A6NIZ1 A6NIZ1 "Ras-related protein Rap-1b-like protein" [Homo sapiens (taxid:9606)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 88/102 (86%), Positives = 95/102 (93%)

Query:     1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
             MLEILDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDTDDVPM
Sbjct:    52 MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPM 111

Query:    61 VLVGNKCDLEEERVVGKEQGASLARAFA-CTFLETSAKAKVN 101
             +LVGNKCDLE+ERVVGKEQG +LAR +  C FLE+SAK+K+N
Sbjct:   112 ILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKIN 153

GO:0003924 "GTPase activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P62836	RAP1A_RAT	No assigned EC number	0.8529	0.9017	0.5489	yes	N/A
P62835	RAP1A_MOUSE	No assigned EC number	0.8529	0.9017	0.5489	yes	N/A
P62834	RAP1A_HUMAN	No assigned EC number	0.8529	0.9017	0.5489	yes	N/A
P62833	RAP1A_BOVIN	No assigned EC number	0.8529	0.9017	0.5489	yes	N/A
Q5ZHX1	RAP1B_CHICK	No assigned EC number	0.8627	0.9017	0.5489	yes	N/A
Q12526	RAS_EMENI	No assigned EC number	0.5544	0.9017	0.4764	yes	N/A
Q5RDM6	RAP1B_PONAB	No assigned EC number	0.8627	0.9017	0.5489	yes	N/A
A5A6J7	RAP1B_PANTR	No assigned EC number	0.8627	0.9017	0.5489	yes	N/A
P08645	RAS3_DROME	No assigned EC number	0.9009	0.9017	0.5489	yes	N/A
P08647	RAS_SCHPO	No assigned EC number	0.5445	0.9017	0.4611	yes	N/A
Q640R7	RAP1B_XENTR	No assigned EC number	0.8627	0.9017	0.5489	yes	N/A
P18613	RAPA_DICDI	No assigned EC number	0.7843	0.9017	0.5430	yes	N/A
P61224	RAP1B_HUMAN	No assigned EC number	0.8627	0.9017	0.5489	yes	N/A
P61223	RAP1B_BOVIN	No assigned EC number	0.8627	0.9017	0.5489	yes	N/A
Q62636	RAP1B_RAT	No assigned EC number	0.8627	0.9017	0.5489	yes	N/A
A6NIZ1	RP1BL_HUMAN	No assigned EC number	0.8627	0.9017	0.5489	yes	N/A
Q99JI6	RAP1B_MOUSE	No assigned EC number	0.8627	0.9017	0.5489	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	112
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	6e-68
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	3e-64
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	8e-64
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	4e-58
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	2e-56
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	1e-47
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	1e-46
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	2e-46
pfam00071	162	pfam00071, Ras, Ras family	2e-45
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	2e-44
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	8e-43
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	3e-41
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	7e-39
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	3e-35
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	3e-32
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	4e-30
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	5e-29
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	1e-26
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	1e-26
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	2e-25
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	3e-24
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	5e-24
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	6e-24
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	7e-24
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	4e-23
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	9e-23
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	3e-22
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	8e-22
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	3e-21
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	3e-21
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	8e-21
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	1e-19
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	3e-19
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	7e-19
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-17
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	3e-17
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	6e-17
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	1e-16
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	2e-16
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	3e-16
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	7e-16
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	1e-15
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	2e-15
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	2e-15
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	4e-15
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	4e-15
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	5e-15
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	6e-15
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	8e-15
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	9e-15
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	3e-14
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	4e-13
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	4e-13
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	5e-13
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	7e-13
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	9e-13
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	9e-13
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	3e-12
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	3e-12
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	2e-10
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	4e-10
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	6e-10
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	7e-10
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	1e-09
pfam08477	116	pfam08477, Miro, Miro-like protein	2e-09
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	5e-09
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	3e-08
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	9e-08
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	6e-07
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	1e-06
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	4e-06
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	7e-06
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	2e-05
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	4e-05
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	5e-05
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	9e-05
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	2e-04
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	2e-04
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	2e-04
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	5e-04
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	0.001

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score =  201 bits (512), Expect = 6e-68
 Identities = 89/101 (88%), Positives = 96/101 (95%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           MLEILDTAGTEQFTAMRDLYMKNGQGF+LVYSITAQSTFNDL DLREQILRVKDT+DVPM
Sbjct: 50  MLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPM 109

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNKCDLE+ERVVGKEQG +LAR + C FLETSAKAK+N
Sbjct: 110 ILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKIN 150

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  191 bits (488), Expect = 3e-64
 Identities = 67/101 (66%), Positives = 82/101 (81%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+F+AMRD YM+ G+GF+LVYSIT + +F ++   REQILRVKD DDVP+
Sbjct: 49  LLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPI 108

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           VLVGNKCDLE ERVV  E+G  LAR + C FLETSAK +VN
Sbjct: 109 VLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVN 149

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  190 bits (485), Expect = 8e-64
 Identities = 66/101 (65%), Positives = 83/101 (82%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+F+AMRD YM+ G+GF+LVYSIT + +F +++  REQILRVKD DDVP+
Sbjct: 51  LLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPI 110

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           VLVGNKCDLE ERVV  E+G  LAR + C FLETSAK ++N
Sbjct: 111 VLVGNKCDLENERVVSTEEGKELARQWGCPFLETSAKERIN 151

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  175 bits (447), Expect = 4e-58
 Identities = 64/101 (63%), Positives = 82/101 (81%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
            L+ILDTAG E+F+AMRD Y++NG GFILVYSIT++ +F ++ ++REQILRVKD +DVP+
Sbjct: 48  TLDILDTAGQEEFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPI 107

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           VLVGNKCDLE ER V  E+G +LA  + C FLETSAK  +N
Sbjct: 108 VLVGNKCDLENERQVSTEEGEALAEEWGCPFLETSAKTNIN 148

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score =  171 bits (435), Expect = 2e-56
 Identities = 83/102 (81%), Positives = 93/102 (91%), Gaps = 1/102 (0%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           MLEILDTAGTEQFTAMRDLY+KNGQGF LVYSITAQ +FNDL DLREQILRVKDT+DVPM
Sbjct: 50  MLEILDTAGTEQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPM 109

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFA-CTFLETSAKAKVN 101
           +LVGNKCDLE+ERVV KE+G +LAR +  C FLETSAK+K+N
Sbjct: 110 ILVGNKCDLEDERVVSKEEGQNLARQWGNCPFLETSAKSKIN 151

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score =  149 bits (378), Expect = 1e-47
 Identities = 63/102 (61%), Positives = 86/102 (84%), Gaps = 1/102 (0%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
            LEILDTAGTEQFTAMR+LY+K+GQGF+LVYS+T++++ N+L +LREQ+LR+KD+D+VPM
Sbjct: 50  DLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPM 109

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACT-FLETSAKAKVN 101
           VLVGNK DLE++R V +E G SL++ +    F ETSA+ + N
Sbjct: 110 VLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTN 151

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  147 bits (372), Expect = 1e-46
 Identities = 61/100 (61%), Positives = 77/100 (77%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           LEILDTAGTEQF +MRDLY+KNGQGFI+VYS+  Q TF D+  +R+QI+RVK  + VP++
Sbjct: 51  LEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPII 110

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK DLE ER V   +G +LA  + C F+ETSAK+K  
Sbjct: 111 LVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTM 150

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  146 bits (370), Expect = 2e-46
 Identities = 54/101 (53%), Positives = 75/101 (74%), Gaps = 1/101 (0%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I ++ +F D+   REQI RVKD+DDVPM
Sbjct: 50  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPM 109

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           VLVGNKCDL   R V   QG  LA+++   ++ETSAK +  
Sbjct: 110 VLVGNKCDL-AARTVSTRQGQDLAKSYGIPYIETSAKTRQG 149

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  143 bits (364), Expect = 2e-45
 Identities = 52/101 (51%), Positives = 72/101 (71%), Gaps = 1/101 (0%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
            L+I DTAG E+F A+R LY +  QGF+LVY IT++ +F ++    E+ILR  D ++VP+
Sbjct: 49  KLQIWDTAGQERFRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHAD-ENVPI 107

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           VLVGNKCDLE++RVV  E+G +LA+     F+ETSAK   N
Sbjct: 108 VLVGNKCDLEDQRVVSTEEGEALAKELGLPFMETSAKTNEN 148

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  141 bits (358), Expect = 2e-44
 Identities = 62/101 (61%), Positives = 81/101 (80%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ GQGF+ VYSIT++S+F +++  REQILRVKD D VPM
Sbjct: 54  LLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPM 113

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNKCDL+ ER V   +G  LA++F   FLETSAK +VN
Sbjct: 114 ILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVN 154

Length = 189

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  137 bits (347), Expect = 8e-43
 Identities = 54/100 (54%), Positives = 75/100 (75%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+ILDTAG E+F+AMR+ YM+ G+GF+LV+S+T + +F ++     QILRVKD D+ PM+
Sbjct: 52  LDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMI 111

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK DLE +R V +E+G  LAR     ++ETSAK +VN
Sbjct: 112 LVGNKADLEHQRQVSREEGQELARQLKIPYIETSAKDRVN 151

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  134 bits (338), Expect = 3e-41
 Identities = 60/103 (58%), Positives = 77/103 (74%), Gaps = 2/103 (1%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTD--DV 58
           MLE+LDTAG E++TA+RD +++ G+GFILVYSIT++STF  +   REQI RVKD    DV
Sbjct: 48  MLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADV 107

Query: 59  PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           P+++VGNKCD   ER V  E+GA+LAR   C F+E SAK  VN
Sbjct: 108 PIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVN 150

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score =  127 bits (321), Expect = 7e-39
 Identities = 54/96 (56%), Positives = 74/96 (77%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG  +FTAMRD YM+ G+GFI+ YS+T + +F + S+ +E I RV+ T+D+P+
Sbjct: 51  LLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPL 110

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
           VLVGNK DLE++R V  E+G +LAR F C F ETSA
Sbjct: 111 VLVGNKVDLEQQRQVTTEEGRNLAREFNCPFFETSA 146

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  117 bits (296), Expect = 3e-35
 Identities = 54/100 (54%), Positives = 76/100 (76%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L ILDTAG E + A+RD Y ++G+GF+LV+SIT   +F  L++ REQILRVK+ D+VP++
Sbjct: 50  LNILDTAGQEDYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLL 109

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNKCDLE++R V  E+ A+LA  +   ++ETSAK + N
Sbjct: 110 LVGNKCDLEDKRQVSVEEAANLAEQWGVNYVETSAKTRAN 149

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  110 bits (277), Expect = 3e-32
 Identities = 38/100 (38%), Positives = 56/100 (56%), Gaps = 1/100 (1%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F ++   Y +   G ILVY +T + +F +L     ++       ++P++
Sbjct: 51  LQIWDTAGQERFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAP-PNIPII 109

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK DLE+ER V  E+    A+     F ETSAK   N
Sbjct: 110 LVGNKSDLEDERQVSTEEAQQFAKENGLLFFETSAKTGEN 149

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  105 bits (264), Expect = 4e-30
 Identities = 41/96 (42%), Positives = 63/96 (65%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           LEI+DTAG ++++ +   Y     G+ILVYS+T++ +F  +  + ++IL +   + VP+V
Sbjct: 51  LEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIV 110

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
           LVGNK DL  ER V  E+G  LA ++   FLE+SAK
Sbjct: 111 LVGNKSDLHMERQVSAEEGKKLAESWGAAFLESSAK 146

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  102 bits (256), Expect = 5e-29
 Identities = 39/100 (39%), Positives = 60/100 (60%), Gaps = 1/100 (1%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F ++   Y +   G +LVY IT + +F +L +  +++ R   + +V ++
Sbjct: 51  LQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLENWLKEL-REYASPNVVIM 109

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK DLEE+R V +E+  + A      F ETSAK   N
Sbjct: 110 LVGNKSDLEEQRQVSREEAEAFAEEHGLPFFETSAKTNTN 149

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 96.2 bits (240), Expect = 1e-26
 Identities = 47/100 (47%), Positives = 64/100 (64%), Gaps = 1/100 (1%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F  +   Y +   G ILVY IT + +F ++ +    I      +DV  +
Sbjct: 54  LQIWDTAGQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHAS-EDVERM 112

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNKCD+EE+RVV KE+G +LAR +   FLETSAKA +N
Sbjct: 113 LVGNKCDMEEKRVVSKEEGEALAREYGIKFLETSAKANIN 152

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 96.0 bits (239), Expect = 1e-26
 Identities = 46/102 (45%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK--DTDDVP 59
           L+I DT G+ QF AM+ L +  G  FILVYSIT++ +  +L  + E I  +K  + + +P
Sbjct: 51  LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIP 110

Query: 60  MVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           ++LVGNKCD    R V   +GA+LAR + C F+ETSAK   N
Sbjct: 111 IMLVGNKCDESPSREVSSSEGAALARTWNCAFMETSAKTNHN 152

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 94.1 bits (234), Expect = 2e-25
 Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 1/103 (0%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           ++ILDT+G+  F AMR L ++NG  F LVYS+    +F ++  LRE+IL VK+   VP+V
Sbjct: 49  IDILDTSGSYSFPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIV 108

Query: 62  LVGNKCDLEEERVVGKEQGASLARA-FACTFLETSAKAKVNSW 103
           +VGNK D   ER V      S     +   F+E SAK   N  
Sbjct: 109 VVGNKIDSLAERQVEAADALSTVELDWNNGFVEASAKDNENVT 151

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 91.3 bits (226), Expect = 3e-24
 Identities = 51/108 (47%), Positives = 65/108 (60%), Gaps = 3/108 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDL--REQILRVKDTDDVP 59
           L I DTAG E+F  +   Y +N QG ILVY +T + TF +LSD+  +E  L   + D V 
Sbjct: 64  LTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVK 123

Query: 60  MVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVE 107
           M LVGNK D E ER V +E+G +LA+   C FLE SAK + N   C E
Sbjct: 124 M-LVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFE 170

Length = 211

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 90.9 bits (226), Expect = 5e-24
 Identities = 39/108 (36%), Positives = 60/108 (55%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L + D    E    + D  M+ G  +++VYS+T +S+F   S+LR Q+ R +  +D+P++
Sbjct: 51  LVVYDHWEQEDGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPII 110

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECT 109
           LVGNK DL   R V  ++G + A  F C F+ETSA  + N     E  
Sbjct: 111 LVGNKSDLVRSREVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGI 158

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 89.3 bits (222), Expect = 6e-24
 Identities = 42/98 (42%), Positives = 57/98 (58%), Gaps = 3/98 (3%)

Query: 2   LEILDTAGTEQFTAMRDL--YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTD-DV 58
           LEI DT G +Q      L   ++   GF+LVYSIT +S+F+ +S L + I  +K  D ++
Sbjct: 49  LEIQDTPGQQQNEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEI 108

Query: 59  PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
           P++LVGNK DL   R V  E+G  LA    C F E SA
Sbjct: 109 PVILVGNKADLLHSRQVSTEEGQKLALELGCLFFEVSA 146

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 88.8 bits (221), Expect = 7e-24
 Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 5/102 (4%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT--DDVP 59
           L I DTAG E++ A+  +Y ++  G ILVY IT   +F     +++ I  +K    +++ 
Sbjct: 51  LAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSF---QKVKKWIKELKQMRGNNIS 107

Query: 60  MVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +V+VGNK DLE +RVV K +    A++      ETSAK    
Sbjct: 108 LVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKG 149

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 86.8 bits (216), Expect = 4e-23
 Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 3/101 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
            EI DTAG E++ ++  +Y +     I+VY IT++ +F      ++E  L+     ++ +
Sbjct: 52  FEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKE--LQEHGPPNIVI 109

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
            L GNK DLE +R V  E+    A      F+ETSAK   N
Sbjct: 110 ALAGNKADLESKRQVSTEEAQEYADENGLLFMETSAKTGEN 150

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 86.1 bits (213), Expect = 9e-23
 Identities = 43/100 (43%), Positives = 60/100 (60%), Gaps = 1/100 (1%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E++  +   Y +   GFIL+Y IT + +FN + D   QI +    D+  ++
Sbjct: 52  LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI-KTYSWDNAQVI 110

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNKCD+E+ERVV  E+G  LA      F E SAK  +N
Sbjct: 111 LVGNKCDMEDERVVSAERGRQLADQLGFEFFEASAKENIN 150

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 85.0 bits (211), Expect = 3e-22
 Identities = 39/102 (38%), Positives = 62/102 (60%), Gaps = 5/102 (4%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT--DDVP 59
           L++ DTAG E+F ++   Y+++    ++VY IT + +F++     + I  V+D   +DV 
Sbjct: 51  LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNT---DKWIDDVRDERGNDVI 107

Query: 60  MVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +VLVGNK DL ++R V  E+G   A+     F+ETSAKA  N
Sbjct: 108 IVLVGNKTDLSDKRQVSTEEGEKKAKENNAMFIETSAKAGHN 149

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 83.9 bits (208), Expect = 8e-22
 Identities = 39/100 (39%), Positives = 55/100 (55%), Gaps = 1/100 (1%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L I DTAG E+F  +   Y +  QG ILVY +T + TF++L     ++       D   +
Sbjct: 51  LAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKM 110

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK D +E R V +E+G   AR     F+ETSAK ++ 
Sbjct: 111 LVGNKID-KENREVTREEGQKFARKHNMLFIETSAKTRIG 149

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 84.4 bits (209), Expect = 3e-21
 Identities = 41/109 (37%), Positives = 58/109 (53%), Gaps = 9/109 (8%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRV--------K 53
           L+ILDT+G   F AMR L +  G  FILV+S+  + +F ++  LREQIL          K
Sbjct: 50  LDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTK 109

Query: 54  DTDDVPMVLVGNKCDLEEERVVGKEQGASL-ARAFACTFLETSAKAKVN 101
           +   +PMV+ GNK D +  R V +++   L      C + E SAK   N
Sbjct: 110 ENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSN 158

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 82.4 bits (204), Expect = 3e-21
 Identities = 39/100 (39%), Positives = 58/100 (58%), Gaps = 1/100 (1%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F  +   Y +   G I+VY +T Q +FN++    ++I R   +++V  +
Sbjct: 53  LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYA-SENVNKL 111

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNKCDL +++VV   +    A      FLETSAK   N
Sbjct: 112 LVGNKCDLTDKKVVDYTEAKEFADELGIPFLETSAKNATN 151

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 81.3 bits (201), Expect = 8e-21
 Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 1/100 (1%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E F ++   Y +   G +LVY IT + TFN L+   E   R     ++ ++
Sbjct: 55  LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDA-RQHSNSNMTIM 113

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L+GNKCDLE  R V  E+G + AR     F+ETSAK   N
Sbjct: 114 LIGNKCDLESRREVSYEEGEAFAREHGLIFMETSAKTASN 153

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 78.8 bits (194), Expect = 1e-19
 Identities = 38/100 (38%), Positives = 62/100 (62%), Gaps = 1/100 (1%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F ++   Y ++    +L+Y +T +S+F+++     +IL      DV ++
Sbjct: 52  LQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYA-QSDVVIM 110

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L+GNK D+  ERVV +E G  LA+ +   F+ETSAK  +N
Sbjct: 111 LLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLN 150

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 77.5 bits (191), Expect = 3e-19
 Identities = 33/110 (30%), Positives = 61/110 (55%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L++ DTAG E+F ++   + ++  GF+L++ +T++ +F ++ +   Q+      ++  +V
Sbjct: 65  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIV 124

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111
           L+GNK DL ++R V + Q   LA  +   + ETSA    N    VE   D
Sbjct: 125 LIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKAVETLLD 174

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 77.3 bits (190), Expect = 7e-19
 Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 1/100 (1%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E F ++   Y +   G +LVY IT + TFN L+   E   R     ++ ++
Sbjct: 57  LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDA-RQHANANMTIM 115

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L+GNKCDL   R V  E+G   A+     F+E SAK   N
Sbjct: 116 LIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQN 155

Length = 210

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 73.0 bits (180), Expect = 1e-17
 Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 11/98 (11%)

Query: 4   ILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFND----LSDLREQILRVKDTD-DV 58
           I DTAG E++ A+   Y +   G +LVY IT +STF +    L +LR+        D ++
Sbjct: 56  IWDTAGQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDH------ADSNI 109

Query: 59  PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
            ++LVGNK DL   R V  E+  + A     +F+ETSA
Sbjct: 110 VIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSA 147

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 72.1 bits (177), Expect = 3e-17
 Identities = 39/101 (38%), Positives = 60/101 (59%), Gaps = 2/101 (1%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F  +   Y ++  G I+ Y IT +S+F  +    E++ +   + +V ++
Sbjct: 54  LQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGAS-NVVLL 112

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTF-LETSAKAKVN 101
           L+GNKCDLEE+R V  E+  +LA  +     LETSAK   N
Sbjct: 113 LIGNKCDLEEQREVLFEEACTLAEHYGILAVLETSAKESSN 153

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 72.0 bits (176), Expect = 6e-17
 Identities = 39/101 (38%), Positives = 59/101 (58%), Gaps = 2/101 (1%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F ++   Y ++ +G ILVY IT + TF+DL    + I +   ++D  ++
Sbjct: 51  LQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA-SEDAELL 109

Query: 62  LVGNKCDLEEERVVGKEQGASLA-RAFACTFLETSAKAKVN 101
           LVGNK D E +R + ++QG   A +     F E SAK   N
Sbjct: 110 LVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFN 150

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 70.6 bits (173), Expect = 1e-16
 Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 1/100 (1%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F A+   Y +   G ++VY IT +ST+N LS        + + + V + 
Sbjct: 53  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IF 111

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L+GNK DLE +R V  E+    A      FLE SAK   N
Sbjct: 112 LIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGEN 151

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 70.2 bits (172), Expect = 2e-16
 Identities = 37/96 (38%), Positives = 57/96 (59%), Gaps = 1/96 (1%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F ++   Y +   G +LVY IT++ +FN L++      R   + D+ ++
Sbjct: 51  LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDA-RTLASPDIVII 109

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
           LVGNK DLE++R V   + +  A+     FLETSA 
Sbjct: 110 LVGNKKDLEDDREVTFLEASRFAQENGLLFLETSAL 145

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 70.4 bits (172), Expect = 3e-16
 Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 1/109 (0%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
            L++ DTAG E++ ++R  Y +   G ++VY  T + + ++L++   + LR    DDVP+
Sbjct: 55  KLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPI 114

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-WLCVEC 108
           +LVGNK DL +E+   +E    L R      L   A     +    +E 
Sbjct: 115 LLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163

Length = 219

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 69.4 bits (170), Expect = 7e-16
 Identities = 37/101 (36%), Positives = 59/101 (58%), Gaps = 2/101 (1%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
           L++ DTAG E+F ++   Y +N  G +LV+ IT + +F  + D L E    ++    V  
Sbjct: 54  LQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPV-F 112

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVG+KCDLE +R V +E+   LA+     ++ETSA+   N
Sbjct: 113 ILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDN 153

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 67.7 bits (166), Expect = 1e-15
 Identities = 31/99 (31%), Positives = 58/99 (58%), Gaps = 4/99 (4%)

Query: 3   EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62
            + DTAG E+F  +RD Y   GQ  I+++ +T++ T+ ++ +    ++RV   +++P+VL
Sbjct: 52  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVL 109

Query: 63  VGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
            GNK D+++ +V  K +  +  R     + E SAK+  N
Sbjct: 110 CGNKVDIKDRKV--KPKQITFHRKKNLQYYEISAKSNYN 146

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 67.5 bits (165), Expect = 2e-15
 Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 2/100 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L + DTAG E+F A+   Y +  Q  ILV+S T + +F  +   +E++       D+PMV
Sbjct: 53  LMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAE--CGDIPMV 110

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LV  K DL ++ V+  E+  +LA+        TS K   N
Sbjct: 111 LVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFN 150

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 67.3 bits (165), Expect = 2e-15
 Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 4/104 (3%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQIL---RVKDTDDV 58
           L+I DTAG E+F ++   + +     +LVY +T   +F  L   R++ L     +D ++ 
Sbjct: 51  LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENF 110

Query: 59  PMVLVGNKCDLEEERVVGKEQGASLARAFAC-TFLETSAKAKVN 101
           P V++GNK DLEE+R V  ++     ++     + ETSAK  +N
Sbjct: 111 PFVVLGNKIDLEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAIN 154

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 66.8 bits (163), Expect = 4e-15
 Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 3/101 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
           L+I DTAG E+F ++   Y ++    IL Y IT + +F  L + LRE  +     + V  
Sbjct: 58  LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLRE--IEQYANNKVIT 115

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNK DL E R V +++    + A    +LETSAK   N
Sbjct: 116 ILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDN 156

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 66.5 bits (162), Expect = 4e-15
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 1/101 (0%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           ++I DTAG E++  +   Y +  QG  LVY I+++ ++  +      +      + V  +
Sbjct: 51  IQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAP-EGVQKI 109

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS 102
           L+GNK D E++R VG EQG  LA+ +   F ETSA    N 
Sbjct: 110 LIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNKNI 150

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 67.3 bits (164), Expect = 5e-15
 Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 3/100 (3%)

Query: 3   EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMV 61
           +I DTAG E++ A+   Y +   G +LVY IT + TF+++   LRE  LR     ++ ++
Sbjct: 64  QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRE--LRDHADSNIVIM 121

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           + GNK DL   R V +E G +LA     +FLETSA    N
Sbjct: 122 MAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATN 161

Length = 216

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 66.8 bits (163), Expect = 6e-15
 Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 2/100 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F  +   Y +   G I+VY +T   +F ++    ++I   ++ DDV  V
Sbjct: 57  LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEI--EQNCDDVCKV 114

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK D  E +VV  E     A     +  ETSAK  +N
Sbjct: 115 LVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENIN 154

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 65.9 bits (161), Expect = 8e-15
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 4/102 (3%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA--QSTFNDLSDLREQILRVKDTDDVP 59
             +LDTAG E + A+R LY +  +  + V+ I          L    ++I+   ++  VP
Sbjct: 53  FNLLDTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-GVP 111

Query: 60  MVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           ++LVGNK DL + ++         A+      +  SA+   N
Sbjct: 112 IILVGNKIDLRDAKLKTHVAFL-FAKLNGEPIIPLSAETGKN 152

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 65.6 bits (160), Expect = 9e-15
 Identities = 36/98 (36%), Positives = 50/98 (51%)

Query: 4   ILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLV 63
           I D+AG E F+ M +   +      +VY +T + +FN+ S    ++         P VLV
Sbjct: 57  IFDSAGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLV 116

Query: 64  GNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           GNKCDL + R V   Q  +LA+A    F ETSAK  V 
Sbjct: 117 GNKCDLTDRREVDAAQAQALAQANTLKFYETSAKEGVG 154

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 64.4 bits (157), Expect = 3e-14
 Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 7/114 (6%)

Query: 2   LEILDTAGTEQF-TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +++ DTAG E+F  +M   Y +N    + VY +T  ++F+ L    E+  +    ++VP 
Sbjct: 53  VQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPR 112

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS------WLCVEC 108
           +LVGNKCDL E+  V  +     A A +    ETSAK    +      ++ +  
Sbjct: 113 ILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAH 166

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 61.4 bits (149), Expect = 4e-13
 Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 3/103 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR---VKDTDDV 58
           L+I DTAG E+F ++R  + +     +L +S+    +F +LS+ +++ +    VK+ +  
Sbjct: 56  LQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 115

Query: 59  PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           P V++GNK D+ E +V  +E  A         + ETSAK   N
Sbjct: 116 PFVILGNKIDIPERQVSTEEAQAWCRDNGDYPYFETSAKDATN 158

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 62.1 bits (151), Expect = 4e-13
 Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 2/106 (1%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-- 59
           L++ D  G +    M D Y+   Q   LVY IT   +F +L D    + +V +  +    
Sbjct: 52  LQVWDIGGQQIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPK 111

Query: 60  MVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLC 105
           MVLVGNK DLE  R V  E+ A  A+      +  SAK     +LC
Sbjct: 112 MVLVGNKTDLEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLC 157

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 61.3 bits (148), Expect = 5e-13
 Identities = 38/100 (38%), Positives = 58/100 (58%), Gaps = 1/100 (1%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L++ DTAG E+F ++   Y+++    I+VY IT + +F + +   + IL  +  D V + 
Sbjct: 31  LQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKD-VIIA 89

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK DL + R V  E+G   A+ +   F ETSAKA  N
Sbjct: 90  LVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHN 129

Length = 176

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 61.6 bits (150), Expect = 7e-13
 Identities = 37/115 (32%), Positives = 64/115 (55%), Gaps = 9/115 (7%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
             + DTAG E+F  +RD Y   GQ  I+++ +T++ T+ ++ +    I+RV   +++P+V
Sbjct: 60  FNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV--CENIPIV 117

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-----WLCVECTND 111
           LVGNK D+++ +V  K +  +  R     + + SAK+  N      WL    TND
Sbjct: 118 LVGNKVDVKDRQV--KARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTND 170

Length = 215

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 61.3 bits (149), Expect = 9e-13
 Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 4/99 (4%)

Query: 3   EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62
              DTAG E+F  +RD Y  +GQ  I+++ +TA+ T+ ++      + RV   +++P+VL
Sbjct: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVL 122

Query: 63  VGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
            GNK D++  +V  K +  +  R     + E SAK+  N
Sbjct: 123 CGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYN 159

Length = 219

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 60.2 bits (146), Expect = 9e-13
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 9/102 (8%)

Query: 2   LEILDTAGTEQFTAMRD-----LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTD 56
           L ++DT G ++F  +       L ++     +LV   T + +     D +  ILR    +
Sbjct: 49  LVLVDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESE---EDAKLLILRRLRKE 105

Query: 57  DVPMVLVGNKCDLEEERVV-GKEQGASLARAFACTFLETSAK 97
            +P++LVGNK DL EER V    +   LA+       E SAK
Sbjct: 106 GIPIILVGNKIDLLEEREVEELLRLEELAKILGVPVFEVSAK 147

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 59.9 bits (145), Expect = 3e-12
 Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 11/107 (10%)

Query: 2   LEILD--------TAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQIL--R 51
           L ILD            +++   R   ++N + FILVY I +  +F+ +  LR+QIL  R
Sbjct: 51  LHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETR 110

Query: 52  VKDTDDVPMVLVGNKCDLEEERVVGKEQGASLAR-AFACTFLETSAK 97
                + P+V+VGNK D +  R   +   + L R ++ C +LE SAK
Sbjct: 111 PAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAK 157

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 59.6 bits (144), Expect = 3e-12
 Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 9/112 (8%)

Query: 6   DTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGN 65
           DTAG E+F  +RD Y   GQ  I+++ +TA+ T+ ++ +    ++RV   +++P+VL GN
Sbjct: 50  DTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRV--CENIPIVLCGN 107

Query: 66  KCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-----WLCVECTNDQ 112
           K D+++ +V  K +  +  R     + + SAK+  N      WL  +   D 
Sbjct: 108 KVDVKDRKV--KAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 157

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 54.3 bits (131), Expect = 2e-10
 Identities = 25/97 (25%), Positives = 53/97 (54%), Gaps = 4/97 (4%)

Query: 4   ILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS----DLREQILRVKDTDDVP 59
             D +G  ++  +R+ + K+ QG +LVY +T + +F  L     +++++     + +++ 
Sbjct: 53  FFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIV 112

Query: 60  MVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
           +V+  NK DL + R V +++G   A +    + ETSA
Sbjct: 113 VVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSA 149

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 53.7 bits (130), Expect = 4e-10
 Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 17/114 (14%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDTDDVP 59
           L + DTAG E++  +R L       F+L +S+ + S+F ++      E  ++     +VP
Sbjct: 50  LGLWDTAGQEEYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPE--IK-HYCPNVP 106

Query: 60  MVLVGNKCDLEEER-----------VVGKEQGASLARAF-ACTFLETSAKAKVN 101
           ++LVG K DL ++             +  E+G  LA+   A  ++E SA  +  
Sbjct: 107 IILVGTKIDLRDDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEG 160

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 53.4 bits (128), Expect = 6e-10
 Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 10/104 (9%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDD---- 57
           L++ DT+G  +F  +   Y +  QG ILVY IT + +F+ +         +K+ D+    
Sbjct: 57  LQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRW------IKEIDEHAPG 110

Query: 58  VPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           VP +LVGN+  L  +R V  EQ  + A     TF E S     N
Sbjct: 111 VPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFN 154

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 52.8 bits (127), Expect = 7e-10
 Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 14/108 (12%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L++ DTAG ++F  +R L   +   F+L +S+   S+F ++S+     +R K     P++
Sbjct: 50  LQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIR-KHNPKAPII 108

Query: 62  LVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSA 96
           LVG + DL              E+ V + +  +LA    AC ++E SA
Sbjct: 109 LVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSA 156

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 52.7 bits (127), Expect = 1e-09
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 7/106 (6%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQI---LRVKDTDDV 58
           L++ D AG E+F  M  +Y K   G I+V+ +T  STF  +   +  +   + + + + +
Sbjct: 52  LQLWDIAGQERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPI 111

Query: 59  PMVLVGNKCDLEEER-VVGKEQGASLAR--AFACTFLETSAKAKVN 101
           P +L+ NKCDL++ER     EQ     +   F   F ETSAK  +N
Sbjct: 112 PALLLANKCDLKKERLAKDPEQMDQFCKENGFIGWF-ETSAKENIN 156

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 50.5 bits (121), Expect = 2e-09
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTD-DVPM 60
           L I D  G E+      ++MK     +LVY +T + + N++S L   +  ++     +P+
Sbjct: 50  LNIWDFGGREELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPV 109

Query: 61  VLVGNKC 67
           +LVGNK 
Sbjct: 110 ILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 50.7 bits (122), Expect = 5e-09
 Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 16/110 (14%)

Query: 6   DTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVPMVLVG 64
           DTAG E +  +R L   +   F++ +S+ + ++F ++ +  +    VK    +VP++LVG
Sbjct: 52  DTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKE--KWYPEVKHFCPNVPIILVG 109

Query: 65  NKCDLEEERV------------VGKEQGASLARAF-ACTFLETSAKAKVN 101
            K DL  ++             V  EQG +LA+   A  +LE SA  +  
Sbjct: 110 TKLDLRNDKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEG 159

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 49.1 bits (117), Expect = 3e-08
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 5/73 (6%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT--DDVP 59
           + I DTAG EQF  +  +Y +     IL Y ++   +  +L D   + L + DT  +D  
Sbjct: 46  ISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELED---RFLGLTDTANEDCL 102

Query: 60  MVLVGNKCDLEEE 72
             +VGNK DL EE
Sbjct: 103 FAVVGNKLDLTEE 115

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 47.7 bits (114), Expect = 9e-08
 Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 16/114 (14%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDL-REQILRVKDTDDVPM 60
           L + DTAG E +  +R L   +    ++ YS+   ++ +++ D    ++         P+
Sbjct: 54  LALWDTAGQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHF--CPGTPI 111

Query: 61  VLVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSAKAKVN 101
           VLVG K DL +++             V  EQG S+A++  A  ++E SAK   N
Sbjct: 112 VLVGLKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMEN 165

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 45.4 bits (107), Expect = 6e-07
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 16/110 (14%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVP 59
           +L + DTAG E +  +R L       F++ +S+   ++F ++ +  E +  +K+   +VP
Sbjct: 49  LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKE--EWVPELKEYAPNVP 106

Query: 60  MVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSA 96
            +L+G + DL +            E+ +  EQG  LA+   AC ++E SA
Sbjct: 107 YLLIGTQIDLRDDPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSA 156

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 44.1 bits (104), Expect = 1e-06
 Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 20/110 (18%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFND-----LSDLREQILRVKDTD 56
           L + DTAG E+F  +R L   +    +L +S+    +  +     L+++R     VK   
Sbjct: 50  LSLWDTAGQEEFDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPGVK--- 106

Query: 57  DVPMVLVGNKCDL---EEERVVGK-----EQGASLARAF-ACTFLETSAK 97
              +VLV  KCDL     ER  G      E+G ++A+   AC +LE SAK
Sbjct: 107 ---LVLVALKCDLREPRNERDRGTHTISYEEGLAVAKRINACRYLECSAK 153

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 42.5 bits (100), Expect = 4e-06
 Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 5/101 (4%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +++  DTAG E+F  M   Y       ILV+ +T + T+ +LS   E++   +    +P 
Sbjct: 50  LVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPE--IPC 107

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           ++V NK DL +  V   ++  + A          SA    N
Sbjct: 108 IVVANKIDL-DPSVT--QKKFNFAEKHNLPLYYVSAADGTN 145

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 42.1 bits (99), Expect = 7e-06
 Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 28  ILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE--RVVGKEQGASLAR 85
           I V+S+  +++F  +  L  Q+   ++  ++P++LVG +  +     RV+   +   L  
Sbjct: 70  IFVFSLEDEASFQTVYRLYHQLSSYRNISEIPLILVGTQDAISASNPRVIDDARARQLCA 129

Query: 86  AFA-CTFLETSAKAKVN 101
               C++ ET A   +N
Sbjct: 130 DMKRCSYYETCATYGLN 146

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 20/107 (18%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTF-------NDLSDLREQILRVKD 54
           L I DTAG+E++ AM  +Y +  +  I+ Y +T  S+F        +L +L E       
Sbjct: 52  LGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHC----- 106

Query: 55  TDDVPMVLVGNKCDLEEE----RVVGKEQGASLARAFACTFLETSAK 97
                + L G K DL E+    R V        A        ETS+K
Sbjct: 107 ----KIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSK 149

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 12/111 (10%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L + DTAG E +  +R L  +    F+L +S+ +++++ ++       LR      VP+V
Sbjct: 51  LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELR-HYAPGVPIV 109

Query: 62  LVGNKCDLEEER----------VVGKEQGASLARAF-ACTFLETSAKAKVN 101
           LVG K DL +++           +   QG  L +   A  ++E S+K + N
Sbjct: 110 LVGTKLDLRDDKQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQN 160

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 39.9 bits (93), Expect = 5e-05
 Identities = 22/68 (32%), Positives = 34/68 (50%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L++ DTAG E+F  +   Y +  Q  I+V+ +T  ++        E  L+  D   V + 
Sbjct: 51  LQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLF 110

Query: 62  LVGNKCDL 69
           LVG K DL
Sbjct: 111 LVGTKKDL 118

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 39.2 bits (91), Expect = 9e-05
 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 14/108 (12%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L + DTAG E++  +R L       FI+ +SI + S++ ++   +          +VP++
Sbjct: 53  LNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRH-KWHPEVCHHCPNVPIL 111

Query: 62  LVGNKCDLEEERVVGK------------EQGASLARAF-ACTFLETSA 96
           LVG K DL  +    K            +QG +LA+   A  +LE SA
Sbjct: 112 LVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L + DTAG E +  +R L       F++ +S+ + ++F ++       +R     + P++
Sbjct: 51  LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 109

Query: 62  LVGNKCDLEEERV------------VGKEQGASLARAF-ACTFLETSA 96
           LVG K DL +++             +   QG ++A+   A  +LE SA
Sbjct: 110 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 157

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
           L + DTAG E +  +R L   +    ++ +SI +  +  ++ +  +    VK    +VP+
Sbjct: 51  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 108

Query: 61  VLVGNKCDLE------------EERVVGKEQGASLARAF-ACTFLETSAKAK 99
           +LVGNK DL             ++  V  E+G ++A    A  +LE SAK K
Sbjct: 109 ILVGNKKDLRNDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTK 160

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 11/105 (10%)

Query: 4   ILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLV 63
           I+DT+   Q  A     ++      LVYS+   ST   +      ++R      VP++LV
Sbjct: 53  IVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRL-GVKVPIILV 111

Query: 64  GNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVEC 108
           GNK DL +       +   L       F E           CVEC
Sbjct: 112 GNKSDLRDGSSQAGLEEEML--PIMNEFREIET--------CVEC 146

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 37.2 bits (86), Expect = 5e-04
 Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 14/108 (12%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L + DTAG E +  +R L       F++ +S+ + S+F ++ +     +        P +
Sbjct: 51  LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT-HHCPKTPFL 109

Query: 62  LVGNKCDL------------EEERVVGKEQGASLARAF-ACTFLETSA 96
           LVG + DL             +++ +  E G  LAR   A  ++E SA
Sbjct: 110 LVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSA 157

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 36.3 bits (84), Expect = 0.001
 Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 20/110 (18%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLR----EQILRVKDTDD 57
           L + DTAG E++  +R L        ++ ++I    T + L ++R    E++ R     +
Sbjct: 51  LALWDTAGQEEYERLRPLSYSKAHVILIGFAI---DTPDSLENVRTKWIEEVRRY--CPN 105

Query: 58  VPMVLVGNKCDLEEE----------RVVGKEQGASLARAF-ACTFLETSA 96
           VP++LVG K DL +E            V  +Q   +ARA  A  ++E SA
Sbjct: 106 VPVILVGLKKDLRQEAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSA 155

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
KOG0084|consensus	205		100.0
KOG0078|consensus	207		100.0
KOG0092|consensus	200		100.0
KOG0094|consensus	221		100.0
KOG0093|consensus	193		100.0
KOG0098|consensus	216		100.0
KOG0394|consensus	210		100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.97
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.97
KOG0079|consensus	198		99.97
KOG0087|consensus	222		99.97
KOG0081|consensus	219		99.97
KOG0088|consensus	218		99.97
KOG0080|consensus	209		99.97
KOG0091|consensus	213		99.97
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.97
PTZ00099	176	rab6; Provisional	99.97
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.97
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.97
KOG0083|consensus	192		99.96
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.96
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.96
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.96
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.96
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.96
KOG0086|consensus	214		99.96
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.96
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.96
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.96
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.96
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.96
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.96
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.96
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.96
PTZ00369	189	Ras-like protein; Provisional	99.96
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.96
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.96
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.95
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.95
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.95
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.95
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.95
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.95
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.95
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.95
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.95
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.95
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.95
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.95
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.95
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.95
KOG0095|consensus	213		99.95
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.95
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.95
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.95
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.95
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.95
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.94
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.94
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.94
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.94
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.94
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.94
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.94
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.94
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.94
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.94
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.94
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.94
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.94
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.94
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.94
PLN03110	216	Rab GTPase; Provisional	99.94
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.94
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.94
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.94
KOG0097|consensus	215		99.94
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.94
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.94
PLN03118	211	Rab family protein; Provisional	99.93
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.93
PLN03108	210	Rab family protein; Provisional	99.93
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.93
PLN00223	181	ADP-ribosylation factor; Provisional	99.93
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.93
KOG0395|consensus	196		99.93
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.93
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.93
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.93
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.93
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.93
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.93
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.93
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.93
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.93
KOG0393|consensus	198		99.92
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.92
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.92
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.92
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.92
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.92
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.92
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.91
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.91
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.91
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.91
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.91
PTZ00133	182	ADP-ribosylation factor; Provisional	99.91
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.91
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.91
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.91
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.91
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.91
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.9
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.9
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.9
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.9
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.9
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.89
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.89
KOG4252|consensus	246		99.89
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.88
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.88
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.87
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.85
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.85
KOG3883|consensus	198		99.85
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.84
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.84
KOG0073|consensus	185		99.84
PLN00023	334	GTP-binding protein; Provisional	99.84
KOG0070|consensus	181		99.83
PRK12299	335	obgE GTPase CgtA; Reviewed	99.83
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.82
KOG0075|consensus	186		99.82
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.82
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.8
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.79
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.79
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.79
KOG0071|consensus	180		99.78
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.78
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.78
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.77
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.77
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.76
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.76
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.76
KOG0076|consensus	197		99.75
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.75
KOG4423|consensus	229		99.75
PRK04213	201	GTP-binding protein; Provisional	99.75
COG1100	219	GTPase SAR1 and related small G proteins [General	99.74
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.73
PRK05433	600	GTP-binding protein LepA; Provisional	99.73
KOG0072|consensus	182		99.73
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.73
PRK12297	424	obgE GTPase CgtA; Reviewed	99.72
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.72
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.72
PRK03003	472	GTP-binding protein Der; Reviewed	99.71
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.7
cd00881	189	GTP_translation_factor GTP translation factor fami	99.7
KOG0096|consensus	216		99.7
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.7
PRK15494	339	era GTPase Era; Provisional	99.69
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.69
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.69
COG2229	187	Predicted GTPase [General function prediction only	99.69
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.69
PRK12296	500	obgE GTPase CgtA; Reviewed	99.68
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.68
PRK03003	472	GTP-binding protein Der; Reviewed	99.68
CHL00189	742	infB translation initiation factor 2; Provisional	99.67
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.66
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.66
PRK05306	787	infB translation initiation factor IF-2; Validated	99.66
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.65
KOG0074|consensus	185		99.65
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.65
PRK12298	390	obgE GTPase CgtA; Reviewed	99.64
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.64
KOG1673|consensus	205		99.63
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.63
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.63
PRK11058	426	GTPase HflX; Provisional	99.62
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.62
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.62
PRK00093	435	GTP-binding protein Der; Reviewed	99.6
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.6
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.59
PRK00089	292	era GTPase Era; Reviewed	99.59
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.59
PRK12317	425	elongation factor 1-alpha; Reviewed	99.58
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.57
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.57
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.56
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.56
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.56
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.55
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.54
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.54
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.54
PRK14845	1049	translation initiation factor IF-2; Provisional	99.53
PRK04004	586	translation initiation factor IF-2; Validated	99.53
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.52
PRK00093	435	GTP-binding protein Der; Reviewed	99.52
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.52
KOG0462|consensus	650		99.51
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.51
PRK10218	607	GTP-binding protein; Provisional	99.51
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.48
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.48
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.48
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.47
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.46
PRK12289	352	GTPase RsgA; Reviewed	99.46
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.43
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.42
PRK00098	298	GTPase RsgA; Reviewed	99.42
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.41
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.41
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.4
PLN00043	447	elongation factor 1-alpha; Provisional	99.39
PRK09866	741	hypothetical protein; Provisional	99.39
PRK12736	394	elongation factor Tu; Reviewed	99.38
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.38
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.37
PRK12288	347	GTPase RsgA; Reviewed	99.37
COG1159	298	Era GTPase [General function prediction only]	99.37
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.36
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.36
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.35
COG1160	444	Predicted GTPases [General function prediction onl	99.34
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.33
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.32
PRK13351	687	elongation factor G; Reviewed	99.31
KOG1489|consensus	366		99.31
PRK12735	396	elongation factor Tu; Reviewed	99.31
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.29
KOG1707|consensus	625		99.27
PRK13768	253	GTPase; Provisional	99.27
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	99.26
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.25
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.25
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.23
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.23
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.22
COG1160	444	Predicted GTPases [General function prediction onl	99.22
KOG1145|consensus	683		99.22
PRK12740	668	elongation factor G; Reviewed	99.21
COG0486	454	ThdF Predicted GTPase [General function prediction	99.2
KOG0077|consensus	193		99.18
PRK00049	396	elongation factor Tu; Reviewed	99.18
CHL00071	409	tufA elongation factor Tu	99.16
PLN03126	478	Elongation factor Tu; Provisional	99.15
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.15
PTZ00141	446	elongation factor 1- alpha; Provisional	99.14
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.13
COG0536	369	Obg Predicted GTPase [General function prediction	99.12
PLN03127	447	Elongation factor Tu; Provisional	99.09
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.09
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.09
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.05
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.04
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	99.0
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.99
COG2262	411	HflX GTPases [General function prediction only]	98.96
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.96
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.96
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	98.94
PRK12739	691	elongation factor G; Reviewed	98.94
KOG1423|consensus	379		98.94
PRK01889	356	GTPase RsgA; Reviewed	98.93
COG1162	301	Predicted GTPases [General function prediction onl	98.93
KOG1144|consensus	1064		98.92
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.92
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.91
PRK13796	365	GTPase YqeH; Provisional	98.88
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	98.87
PRK00007	693	elongation factor G; Reviewed	98.82
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.81
COG1217	603	TypA Predicted membrane GTPase involved in stress	98.8
KOG0090|consensus	238		98.78
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.77
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.75
COG0218	200	Predicted GTPase [General function prediction only	98.74
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.73
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.69
COG1084	346	Predicted GTPase [General function prediction only	98.67
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.67
KOG0082|consensus	354		98.64
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.62
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.6
PRK09602	396	translation-associated GTPase; Reviewed	98.6
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.58
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	98.58
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.57
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.57
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.57
COG1163	365	DRG Predicted GTPase [General function prediction	98.56
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	98.53
PRK07560	731	elongation factor EF-2; Reviewed	98.51
KOG0458|consensus	603		98.51
COG3596	296	Predicted GTPase [General function prediction only	98.47
KOG1490|consensus	620		98.46
PTZ00416	836	elongation factor 2; Provisional	98.45
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	98.44
KOG0468|consensus	971		98.36
KOG1707|consensus	625		98.33
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.32
KOG1532|consensus	366		98.29
KOG0461|consensus	522		98.28
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	98.26
KOG3886|consensus	295		98.2
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	98.2
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	98.14
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	98.14
KOG1191|consensus	531		98.1
KOG3905|consensus	473		98.09
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	98.07
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.06
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.04
KOG0099|consensus	379		97.97
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.94
cd03110	179	Fer4_NifH_child This protein family's function is	97.91
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	97.9
KOG0466|consensus	466		97.88
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	97.82
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	97.79
PTZ00258	390	GTP-binding protein; Provisional	97.76
KOG1143|consensus	591		97.63
COG0050	394	TufB GTPases - translation elongation factors [Tra	97.59
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	97.55
PRK09601	364	GTP-binding protein YchF; Reviewed	97.55
KOG0705|consensus	749		97.54
KOG3887|consensus	347		97.5
COG1161	322	Predicted GTPases [General function prediction onl	97.45
KOG1954|consensus	532		97.4
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.37
KOG0467|consensus	887		97.34
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	97.26
KOG0465|consensus	721		97.25
KOG0460|consensus	449		97.24
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	97.23
KOG0085|consensus	359		97.19
KOG1424|consensus	562		97.16
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	97.16
KOG0463|consensus	641		97.04
KOG0464|consensus	753		96.92
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	96.92
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	96.91
KOG2484|consensus	435		96.84
COG1149	284	MinD superfamily P-loop ATPase containing an inser	96.8
KOG0448|consensus	749		96.79
KOG0459|consensus	501		96.78
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	96.63
KOG2486|consensus	320		96.53
KOG4273|consensus	418		96.51
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	96.5
TIGR00064	272	ftsY signal recognition particle-docking protein F	96.39
KOG0469|consensus	842		96.38
PRK13505	557	formate--tetrahydrofolate ligase; Provisional	95.86
PRK14974	336	cell division protein FtsY; Provisional	95.85
KOG0447|consensus	980		95.77
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	95.74
PHA02518	211	ParA-like protein; Provisional	95.72
PRK10416	318	signal recognition particle-docking protein FtsY;	95.72
cd02036	179	MinD Bacterial cell division requires the formatio	95.45
cd03111	106	CpaE_like This protein family consists of proteins	95.45
KOG2423|consensus	572		94.92
KOG0410|consensus	410		94.92
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	94.85
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	94.83
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	94.6
cd02117	212	NifH_like This family contains the NifH (iron prot	94.55
COG4963	366	CpaE Flp pilus assembly protein, ATPase CpaE [Intr	94.49
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	94.49
COG0012	372	Predicted GTPase, probable translation factor [Tra	94.06
cd03114	148	ArgK-like The function of this protein family is u	94.04
PRK10818	270	cell division inhibitor MinD; Provisional	93.79
COG0523	323	Putative GTPases (G3E family) [General function pr	93.56
cd03112	158	CobW_like The function of this protein family is u	93.49
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	93.47
PRK13849	231	putative crown gall tumor protein VirC1; Provision	93.22
TIGR00959	428	ffh signal recognition particle protein. This mode	92.9
cd02032	267	Bchl_like This family of proteins contains bchL an	92.77
PRK00771	437	signal recognition particle protein Srp54; Provisi	92.7
TIGR01968	261	minD_bact septum site-determining protein MinD. Th	92.56
CHL00175	281	minD septum-site determining protein; Validated	92.54
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	92.47
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	92.41
PF09419	168	PGP_phosphatase: Mitochondrial PGP phosphatase; In	92.25
PF01656	195	CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai	92.15
KOG3929|consensus	363		91.77
PF14331	266	ImcF-related_N: ImcF-related N-terminal domain	91.62
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	91.11
KOG2485|consensus	335		91.04
TIGR01281	268	DPOR_bchL light-independent protochlorophyllide re	90.74
COG3523	1188	IcmF Type VI protein secretion system component Va	89.82
cd03115	173	SRP The signal recognition particle (SRP) mediates	89.59
cd02040	270	NifH NifH gene encodes component II (iron protein)	89.4
PRK10867	433	signal recognition particle protein; Provisional	89.2
PF08438	109	MMR_HSR1_C: GTPase of unknown function C-terminal;	88.62
cd00477	524	FTHFS Formyltetrahydrofolate synthetase (FTHFS) ca	88.47
KOG0781|consensus	587		87.77
KOG1547|consensus	336		87.07
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	87.04
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	86.85
CHL00072	290	chlL photochlorophyllide reductase subunit L	84.98
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	84.38
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	83.86
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	83.61
KOG1486|consensus	364		83.05
COG2759	554	MIS1 Formyltetrahydrofolate synthetase [Nucleotide	82.92
TIGR01969	251	minD_arch cell division ATPase MinD, archaeal. Thi	82.75
PF01268	557	FTHFS: Formate--tetrahydrofolate ligase; InterPro:	82.59
TIGR01007	204	eps_fam capsular exopolysaccharide family. This mo	82.29
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	82.06
PTZ00386	625	formyl tetrahydrofolate synthetase; Provisional	81.97
PF10087	97	DUF2325: Uncharacterized protein conserved in bact	81.88
KOG0780|consensus	483		81.51
PRK11537	318	putative GTP-binding protein YjiA; Provisional	80.94
KOG1487|consensus	358		80.54
KOG1534|consensus	273		80.4
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	80.28
TIGR01287	275	nifH nitrogenase iron protein. This model describe	80.27
PRK13507	587	formate--tetrahydrofolate ligase; Provisional	80.23

>KOG0084|consensus

Probab=100.00  E-value=1.1e-34  Score=173.28  Aligned_cols=109  Identities=40%  Similarity=0.625  Sum_probs=103.3

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      ++|+|||+||+||+++..+||++|+|+|+|||+++..||+++..|+.++.++.. .++|.++||||+|+.+.+.++.+++
T Consensus        59 KlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~~~v~~~~a  137 (205)
T KOG0084|consen   59 KLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEKRVVSTEEA  137 (205)
T ss_pred             EEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhheecCHHHH
Confidence            589999999999999999999999999999999999999999999999998763 5689999999999999999999999


Q ss_pred             HHHHHHhCCc-EEEeecCCCCChhHHhhhhc
Q psy785           81 ASLARAFACT-FLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        81 ~~~~~~~~~~-~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      ++++.+++++ ++|+||+++.||++.|..+.
T Consensus       138 ~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la  168 (205)
T KOG0084|consen  138 QEFADELGIPIFLETSAKDSTNVEDAFLTLA  168 (205)
T ss_pred             HHHHHhcCCcceeecccCCccCHHHHHHHHH
Confidence            9999999998 99999999999999998875

>KOG0078|consensus

Probab=100.00  E-value=1.8e-34  Score=174.21  Aligned_cols=109  Identities=41%  Similarity=0.649  Sum_probs=104.0

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      ++|+|||+||++|..+.++||++|+++++|||+++..||+++..|+..+.++.. .+.|.++||||+|+...++++.+..
T Consensus        62 ~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~-~~v~~~LvGNK~D~~~~R~V~~e~g  140 (207)
T KOG0078|consen   62 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHAS-DDVVKILVGNKCDLEEKRQVSKERG  140 (207)
T ss_pred             EEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCC-CCCcEEEeeccccccccccccHHHH
Confidence            479999999999999999999999999999999999999999999999999864 4899999999999999899999999


Q ss_pred             HHHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785           81 ASLARAFACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      ++++.++|++++|+||++|.||++.|..|+
T Consensus       141 e~lA~e~G~~F~EtSAk~~~NI~eaF~~La  170 (207)
T KOG0078|consen  141 EALAREYGIKFFETSAKTNFNIEEAFLSLA  170 (207)
T ss_pred             HHHHHHhCCeEEEccccCCCCHHHHHHHHH
Confidence            999999999999999999999999998875

>KOG0092|consensus

Probab=100.00  E-value=1.8e-34  Score=171.85  Aligned_cols=110  Identities=31%  Similarity=0.470  Sum_probs=103.6

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      +|+||||+|||+|.++.+.||++|+++|+|||+++.+||..++.|+.++.+... +++-+.++|||+|+.+.+.+..++.
T Consensus        55 kfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea  133 (200)
T KOG0092|consen   55 KFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEA  133 (200)
T ss_pred             EEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHH
Confidence            478999999999999999999999999999999999999999999999988764 6778888999999999899999999


Q ss_pred             HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           81 ASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..++.+.|..++|+||++|.||+++|..+.+
T Consensus       134 ~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~  164 (200)
T KOG0092|consen  134 QAYAESQGLLFFETSAKTGENVNEIFQAIAE  164 (200)
T ss_pred             HHHHHhcCCEEEEEecccccCHHHHHHHHHH
Confidence            9999999999999999999999999998865

>KOG0094|consensus

Probab=100.00  E-value=4e-33  Score=166.51  Aligned_cols=109  Identities=36%  Similarity=0.545  Sum_probs=104.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      ||+|||||||+|+.+.+.|++++.++|+|||+++..||++...|+..+.+..+..+.-+++||||.||.+.++++.++..
T Consensus        73 LQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~  152 (221)
T KOG0094|consen   73 LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGE  152 (221)
T ss_pred             EEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHH
Confidence            79999999999999999999999999999999999999999999999999887777888999999999999999999999


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      ..+++++..++++||+.|+||.++|.++.
T Consensus       153 ~kAkel~a~f~etsak~g~NVk~lFrrIa  181 (221)
T KOG0094|consen  153 RKAKELNAEFIETSAKAGENVKQLFRRIA  181 (221)
T ss_pred             HHHHHhCcEEEEecccCCCCHHHHHHHHH
Confidence            99999999999999999999999999865

>KOG0093|consensus

Probab=100.00  E-value=1.3e-32  Score=157.99  Aligned_cols=110  Identities=40%  Similarity=0.655  Sum_probs=103.7

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      ++|+|||+|||+|+.+...+|++++++|+|||+++++||..+.+|...+..++. .+.|+|+++||+|+.+++.++.+..
T Consensus        71 klQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw-~naqvilvgnKCDmd~eRvis~e~g  149 (193)
T KOG0093|consen   71 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSW-DNAQVILVGNKCDMDSERVISHERG  149 (193)
T ss_pred             EEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeec-cCceEEEEecccCCccceeeeHHHH
Confidence            479999999999999999999999999999999999999999999999877643 5799999999999999999999999


Q ss_pred             HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           81 ASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +.++.++|+++||+||+.+.||+++|+++++
T Consensus       150 ~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~  180 (193)
T KOG0093|consen  150 RQLADQLGFEFFETSAKENINVKQVFERLVD  180 (193)
T ss_pred             HHHHHHhChHHhhhcccccccHHHHHHHHHH
Confidence            9999999999999999999999999999864

>KOG0098|consensus

Probab=100.00  E-value=1.7e-32  Score=162.77  Aligned_cols=109  Identities=38%  Similarity=0.557  Sum_probs=103.3

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      ++++|||+||++|.+..++||+++-++++|||+++.+||+.+..|+.++.++. .+++.++++|||+|+...+.++.++.
T Consensus        56 KlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEG  134 (216)
T KOG0098|consen   56 KLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARREVSKEEG  134 (216)
T ss_pred             EEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccccccHHHH
Confidence            48999999999999999999999999999999999999999999999999985 36789999999999999999999999


Q ss_pred             HHHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785           81 ASLARAFACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      +.|++++|+.+.++||+++.||+|+|....
T Consensus       135 eaFA~ehgLifmETSakt~~~VEEaF~nta  164 (216)
T KOG0098|consen  135 EAFAREHGLIFMETSAKTAENVEEAFINTA  164 (216)
T ss_pred             HHHHHHcCceeehhhhhhhhhHHHHHHHHH
Confidence            999999999999999999999999998653

>KOG0394|consensus

Probab=100.00  E-value=2.2e-32  Score=161.92  Aligned_cols=110  Identities=27%  Similarity=0.485  Sum_probs=100.7

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC---CCCcEEEEeeCCCCCC--cccc
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT---DDVPMVLVGNKCDLEE--ERVV   75 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ivv~nK~D~~~--~~~~   75 (112)
                      ++++|||+||++|+++...+|+++|+|+++||+++++||+.+..|..++......   ...|+|++|||+|+.+  ++.+
T Consensus        59 tlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~V  138 (210)
T KOG0394|consen   59 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQV  138 (210)
T ss_pred             EEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCcccee
Confidence            5899999999999999999999999999999999999999999999999887764   4589999999999975  3789


Q ss_pred             cHHHHHHHHHHhC-CcEEEeecCCCCChhHHhhhhc
Q psy785           76 GKEQGASLARAFA-CTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        76 ~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      +.+.++.||...| +|+||+|||.+.||.+.|+.+.
T Consensus       139 S~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia  174 (210)
T KOG0394|consen  139 SEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIA  174 (210)
T ss_pred             eHHHHHHHHHhcCCceeEEecccccccHHHHHHHHH
Confidence            9999999999875 7999999999999999998764

>cd04121 Rab40 Rab40 subfamily

Probab=99.97  E-value=5.3e-31  Score=161.08  Aligned_cols=108  Identities=31%  Similarity=0.426  Sum_probs=100.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||+|+++|..+++.+++++|++++|||++++.||+.+..|+.++.++.  ++.|+++||||.|+...+.++.++++
T Consensus        57 l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~  134 (189)
T cd04121          57 LQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQ  134 (189)
T ss_pred             EEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHH
Confidence            7899999999999999999999999999999999999999999999997754  57999999999999876778888899


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+++..++++++|||++|.||+++|++++.
T Consensus       135 ~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~  164 (189)
T cd04121         135 AYAERNGMTFFEVSPLCNFNITESFTELAR  164 (189)
T ss_pred             HHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999863

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04120 Rab12 Rab12 subfamily

Probab=99.97  E-value=9.5e-31  Score=161.34  Aligned_cols=110  Identities=36%  Similarity=0.556  Sum_probs=99.0

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      .+++|||+|+++|..+++.+++++|++++|||+++++||+.+..|+..+.+.. ..+.|+++||||+|+.+.+.+...+.
T Consensus        50 ~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~-~~~~piilVgNK~DL~~~~~v~~~~~  128 (202)
T cd04120          50 RLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA-SEDAELLLVGNKLDCETDREISRQQG  128 (202)
T ss_pred             EEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHH
Confidence            36899999999999999999999999999999999999999999999876643 35799999999999987777888888


Q ss_pred             HHHHHHh-CCcEEEeecCCCCChhHHhhhhcc
Q psy785           81 ASLARAF-ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        81 ~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+++++. ++.+++|||++|.||+++|+++++
T Consensus       129 ~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120         129 EKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             HHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            8888775 789999999999999999999864

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0079|consensus

Probab=99.97  E-value=1.6e-31  Score=153.77  Aligned_cols=109  Identities=38%  Similarity=0.552  Sum_probs=103.1

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      +++||||+|||+|+.+...+|++.+++++|||+++.+||.++.+|++++...+  ...|-++||||.|.++++.+..+++
T Consensus        58 kLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t~dA  135 (198)
T KOG0079|consen   58 KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVVDTEDA  135 (198)
T ss_pred             EEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceeeehHHH
Confidence            47999999999999999999999999999999999999999999999998876  4699999999999999999999999


Q ss_pred             HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           81 ASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +.|+...|+++||+||+.+.|++.+|..+..
T Consensus       136 r~~A~~mgie~FETSaKe~~NvE~mF~cit~  166 (198)
T KOG0079|consen  136 RAFALQMGIELFETSAKENENVEAMFHCITK  166 (198)
T ss_pred             HHHHHhcCchheehhhhhcccchHHHHHHHH
Confidence            9999999999999999999999999987754

>KOG0087|consensus

Probab=99.97  E-value=4.5e-31  Score=159.31  Aligned_cols=108  Identities=34%  Similarity=0.487  Sum_probs=102.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      .+||||+||++|+++...||++|.++++|||++...+|+.+.+|+.++..+.+ +++++++||||+||...+.++.++..
T Consensus        65 aqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~lraV~te~~k  143 (222)
T KOG0087|consen   65 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHLRAVPTEDGK  143 (222)
T ss_pred             EeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhccccchhhhH
Confidence            58999999999999999999999999999999999999999999999999864 58999999999999888889999999


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      .++++.++.++++||..+.||+++|+.++
T Consensus       144 ~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l  172 (222)
T KOG0087|consen  144 AFAEKEGLFFLETSALDATNVEKAFERVL  172 (222)
T ss_pred             hHHHhcCceEEEecccccccHHHHHHHHH
Confidence            99999999999999999999999998765

>KOG0081|consensus

Probab=99.97  E-value=8.4e-31  Score=152.46  Aligned_cols=111  Identities=32%  Similarity=0.557  Sum_probs=104.0

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      ++++|||+|||+|+++...++++|.+++++||.+++.||-++++|+..+..+.-..+..++++|||+|+.+.+.++..++
T Consensus        68 hLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa  147 (219)
T KOG0081|consen   68 HLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQA  147 (219)
T ss_pred             EEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHH
Confidence            58999999999999999999999999999999999999999999999998887667778999999999999999999999


Q ss_pred             HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           81 ASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..++.++++|+||+||-+|.||++..+.|.+
T Consensus       148 ~~La~kyglPYfETSA~tg~Nv~kave~Lld  178 (219)
T KOG0081|consen  148 AALADKYGLPYFETSACTGTNVEKAVELLLD  178 (219)
T ss_pred             HHHHHHhCCCeeeeccccCcCHHHHHHHHHH
Confidence            9999999999999999999999998887653

>KOG0088|consensus

Probab=99.97  E-value=3.6e-31  Score=153.90  Aligned_cols=108  Identities=33%  Similarity=0.561  Sum_probs=101.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.||||+||++|.++.+.||++.+++++|||+++.+||+.+++|..++....+ ..+-.++||||+|+.+++.++.++++
T Consensus        64 L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEeeR~Vt~qeAe  142 (218)
T KOG0088|consen   64 LHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEERQVTRQEAE  142 (218)
T ss_pred             eeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHhhhhhHHHHH
Confidence            68999999999999999999999999999999999999999999999987543 56889999999999999999999999


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      .+++.-|..++++||+.+.||.++|+.|.
T Consensus       143 ~YAesvGA~y~eTSAk~N~Gi~elFe~Lt  171 (218)
T KOG0088|consen  143 AYAESVGALYMETSAKDNVGISELFESLT  171 (218)
T ss_pred             HHHHhhchhheecccccccCHHHHHHHHH
Confidence            99999999999999999999999999764

>KOG0080|consensus

Probab=99.97  E-value=3.8e-31  Score=153.97  Aligned_cols=111  Identities=40%  Similarity=0.598  Sum_probs=105.0

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      ++-||||+|||+|+.+.++||++|.++|+|||++..++|.++..|+.++.-++.-+++-.++||||+|..+++.++.++.
T Consensus        61 KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG  140 (209)
T KOG0080|consen   61 KLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEG  140 (209)
T ss_pred             EEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHH
Confidence            46799999999999999999999999999999999999999999999999888777889999999999887899999999


Q ss_pred             HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           81 ASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++++++++-++|+||++..||..+|+.+++
T Consensus       141 ~kfAr~h~~LFiE~SAkt~~~V~~~Feelve  171 (209)
T KOG0080|consen  141 LKFARKHRCLFIECSAKTRENVQCCFEELVE  171 (209)
T ss_pred             HHHHHhhCcEEEEcchhhhccHHHHHHHHHH
Confidence            9999999999999999999999999998864

>KOG0091|consensus

Probab=99.97  E-value=3e-30  Score=150.64  Aligned_cols=111  Identities=32%  Similarity=0.497  Sum_probs=102.2

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC-CCcEEEEeeCCCCCCcccccHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTD-DVPMVLVGNKCDLEEERVVGKEQ   79 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~   79 (112)
                      ++++|||+||++|+++..+||+|.-+++++||+++..||+.+.+|..+..-+...+ .+-+.+||.|.|+...++++.++
T Consensus        59 klqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EE  138 (213)
T KOG0091|consen   59 KLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEE  138 (213)
T ss_pred             EEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHH
Confidence            58999999999999999999999999999999999999999999999988776644 45577899999999999999999


Q ss_pred             HHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           80 GASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +++++...|+.++|+||++|.||++.|+-+.+
T Consensus       139 aEklAa~hgM~FVETSak~g~NVeEAF~mlaq  170 (213)
T KOG0091|consen  139 AEKLAASHGMAFVETSAKNGCNVEEAFDMLAQ  170 (213)
T ss_pred             HHHHHHhcCceEEEecccCCCcHHHHHHHHHH
Confidence            99999999999999999999999999987653

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.97  E-value=9.4e-30  Score=154.82  Aligned_cols=108  Identities=24%  Similarity=0.404  Sum_probs=97.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEeeCCCCCC---------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEE---------   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~~---------   71 (112)
                      +++|||+|+++|..+++.+++++|++++|||++++.||+.+ ..|+..+.+..  ++.|+++||||.|+.+         
T Consensus        55 l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~  132 (182)
T cd04172          55 LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELS  132 (182)
T ss_pred             EEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHH
Confidence            78999999999999999999999999999999999999997 79999998764  5689999999999864         


Q ss_pred             ---cccccHHHHHHHHHHhCC-cEEEeecCCCCC-hhHHhhhhcc
Q psy785           72 ---ERVVGKEQGASLARAFAC-TFLETSAKAKVN-SWLCVECTND  111 (112)
Q Consensus        72 ---~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-v~~~~~~l~~  111 (112)
                         .+.++.+++++++++.++ +++||||++|.| |+++|+.++.
T Consensus       133 ~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~  177 (182)
T cd04172         133 NHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL  177 (182)
T ss_pred             hcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHH
Confidence               245788899999999996 999999999998 9999998753

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>PTZ00099 rab6; Provisional

Probab=99.97  E-value=1.4e-29  Score=153.28  Aligned_cols=110  Identities=35%  Similarity=0.499  Sum_probs=98.8

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      ++.||||||++++..++..+++++|++++|||++++.+++.+..|+..+.+... .+.|+++|+||+|+.+.+.+...+.
T Consensus        30 ~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~-~~~piilVgNK~DL~~~~~v~~~e~  108 (176)
T PTZ00099         30 RLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-KDVIIALVGNKTDLGDLRKVTYEEG  108 (176)
T ss_pred             EEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEECcccccccCCCHHHH
Confidence            378999999999999999999999999999999999999999999999877542 5689999999999976666777788


Q ss_pred             HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           81 ASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..++..+++.++++||++|.||+++|+++++
T Consensus       109 ~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~  139 (176)
T PTZ00099        109 MQKAQEYNTMFHETSAKAGHNIKVLFKKIAA  139 (176)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            8888888899999999999999999999864

>cd04133 Rop_like Rop subfamily

Probab=99.97  E-value=1e-29  Score=153.87  Aligned_cols=109  Identities=25%  Similarity=0.503  Sum_probs=97.6

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc------
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEEER------   73 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~------   73 (112)
                      .+++|||+|+++|..++..++++++++++|||+++++||+.+ ..|+..+.+..  .+.|+++||||+|+.+.+      
T Consensus        50 ~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~  127 (176)
T cd04133          50 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADH  127 (176)
T ss_pred             EEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhc
Confidence            378999999999999999999999999999999999999998 68999987764  469999999999996532      


Q ss_pred             ----cccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           74 ----VVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 ----~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                          .++.++..++++..+. +++||||++|.||+++|+.+++
T Consensus       128 ~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~  170 (176)
T cd04133         128 PGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIK  170 (176)
T ss_pred             cCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHH
Confidence                4778889999999988 6999999999999999998864

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.97  E-value=2.5e-29  Score=151.76  Aligned_cols=110  Identities=48%  Similarity=0.773  Sum_probs=100.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||+++|..++..+++++|++++|||++++.|++.+..|...+.+.....++|+++|+||+|+.+.+.++..+..
T Consensus        52 l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~  131 (172)
T cd04141          52 LDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGR  131 (172)
T ss_pred             EEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHH
Confidence            68999999999999999999999999999999999999999999888877654467999999999999776778888888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++..++++++|||++|.||+++|++++.
T Consensus       132 ~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~  161 (172)
T cd04141         132 NLAREFNCPFFETSAALRHYIDDAFHGLVR  161 (172)
T ss_pred             HHHHHhCCEEEEEecCCCCCHHHHHHHHHH
Confidence            899889999999999999999999999864

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>KOG0083|consensus

Probab=99.96  E-value=1.7e-30  Score=147.41  Aligned_cols=110  Identities=34%  Similarity=0.614  Sum_probs=101.3

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      ++|+|||+||++|++....||+++|+++++||+++..||++++.|+.+|.++.. ..+.++++|||+|+..++.+..++.
T Consensus        48 klqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k-~~v~l~llgnk~d~a~er~v~~ddg  126 (192)
T KOG0083|consen   48 KLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAK-EAVALMLLGNKCDLAHERAVKRDDG  126 (192)
T ss_pred             EEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHH-hhHhHhhhccccccchhhccccchH
Confidence            479999999999999999999999999999999999999999999999988753 4678899999999977788888899


Q ss_pred             HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           81 ASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +++++.+++|+.++||++|.|++..|..+.+
T Consensus       127 ~kla~~y~ipfmetsaktg~nvd~af~~ia~  157 (192)
T KOG0083|consen  127 EKLAEAYGIPFMETSAKTGFNVDLAFLAIAE  157 (192)
T ss_pred             HHHHHHHCCCceeccccccccHhHHHHHHHH
Confidence            9999999999999999999999999987653

>cd04127 Rab27A Rab27a subfamily

Probab=99.96  E-value=4.7e-29  Score=151.17  Aligned_cols=110  Identities=32%  Similarity=0.549  Sum_probs=100.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|||+++++++..+..|+..+.......+.|+++|+||+|+.+.+.+..++..
T Consensus        65 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~  144 (180)
T cd04127          65 LQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAK  144 (180)
T ss_pred             EEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHH
Confidence            68999999999999999999999999999999999999999999999987654467899999999999876777778888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++..+++++++||++|.|++++|+++.+
T Consensus       145 ~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~  174 (180)
T cd04127         145 ALADKYGIPYFETSAATGTNVEKAVERLLD  174 (180)
T ss_pred             HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999864

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd01875 RhoG RhoG subfamily

Probab=99.96  E-value=8.5e-29  Score=151.66  Aligned_cols=108  Identities=27%  Similarity=0.447  Sum_probs=94.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCcc-------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEER-------   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~-------   73 (112)
                      +++|||+|+++|..+++.+++++|++++|||+++++||+.+. .|...+....  .++|+++||||.|+.+.+       
T Consensus        53 l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~  130 (191)
T cd01875          53 LNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC--PNVPILLVGTKKDLRNDADTLKKLK  130 (191)
T ss_pred             EEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEeChhhhcChhhHHHHh
Confidence            689999999999999999999999999999999999999996 5888776643  579999999999996432       


Q ss_pred             -----cccHHHHHHHHHHhC-CcEEEeecCCCCChhHHhhhhcc
Q psy785           74 -----VVGKEQGASLARAFA-CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 -----~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                           .+..++..+++++.+ ++++++||++|.||+++|+++++
T Consensus       131 ~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~  174 (191)
T cd01875         131 EQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVR  174 (191)
T ss_pred             hccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHH
Confidence                 355677888888888 59999999999999999999864

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04131 Rnd Rnd subfamily

Probab=99.96  E-value=6.2e-29  Score=150.81  Aligned_cols=108  Identities=23%  Similarity=0.391  Sum_probs=96.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEeeCCCCCC---------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEE---------   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~~---------   71 (112)
                      +++|||+|+++|..+++.+++++|++++|||+++++||+.+ ..|+..+.+..  ++.|+++||||.|+.+         
T Consensus        51 l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~  128 (178)
T cd04131          51 LSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELS  128 (178)
T ss_pred             EEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHH
Confidence            78999999999999999999999999999999999999996 78999998764  5789999999999864         


Q ss_pred             ---cccccHHHHHHHHHHhCC-cEEEeecCCCCC-hhHHhhhhcc
Q psy785           72 ---ERVVGKEQGASLARAFAC-TFLETSAKAKVN-SWLCVECTND  111 (112)
Q Consensus        72 ---~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-v~~~~~~l~~  111 (112)
                         .+.++.+++.++++++++ +++||||++|.| |+++|..++.
T Consensus       129 ~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~  173 (178)
T cd04131         129 HQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATM  173 (178)
T ss_pred             hcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHH
Confidence               235778899999999997 899999999995 9999998753

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.96  E-value=1.1e-28  Score=154.73  Aligned_cols=108  Identities=23%  Similarity=0.413  Sum_probs=96.7

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCCcEEEEeeCCCCCC--------
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFND-LSDLREQILRVKDTDDVPMVLVGNKCDLEE--------   71 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~--------   71 (112)
                      .++||||+|+++|..+++.+++++|++++|||+++++||+. +..|+..+.+..  ++.|+++||||+|+.+        
T Consensus        62 ~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l  139 (232)
T cd04174          62 ELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMEL  139 (232)
T ss_pred             EEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhh
Confidence            37899999999999999999999999999999999999998 488999998754  4689999999999864        


Q ss_pred             ----cccccHHHHHHHHHHhCC-cEEEeecCCCC-ChhHHhhhhc
Q psy785           72 ----ERVVGKEQGASLARAFAC-TFLETSAKAKV-NSWLCVECTN  110 (112)
Q Consensus        72 ----~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~-~v~~~~~~l~  110 (112)
                          .+.++.+++++++++.++ .+++|||++|. ||+++|+.++
T Consensus       140 ~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~  184 (232)
T cd04174         140 SNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSAS  184 (232)
T ss_pred             ccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHH
Confidence                256778899999999998 69999999998 8999999875

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04136 Rap_like Rap-like subfamily

Probab=99.96  E-value=1.7e-28  Score=146.34  Aligned_cols=110  Identities=73%  Similarity=1.077  Sum_probs=99.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||+++|..+++.+++++|++++|||++++.+++.+..|+..+.+.....++|+++++||+|+.+.+.+..+...
T Consensus        51 l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~  130 (163)
T cd04136          51 LEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQ  130 (163)
T ss_pred             EEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHH
Confidence            67999999999999999999999999999999999999999999999987655567999999999999766666667777


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+++.++.+++++||++|.|+.++|+++.+
T Consensus       131 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04136         131 ALARQWGCPFYETSAKSKINVDEVFADLVR  160 (163)
T ss_pred             HHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            788888889999999999999999999875

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>KOG0086|consensus

Probab=99.96  E-value=3.1e-29  Score=145.16  Aligned_cols=108  Identities=32%  Similarity=0.444  Sum_probs=100.8

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      +++||||+||++|++..+.||++|-+.++|||+++.++|+.+..|+..+.... .+++-++++|||.|+.+.++++..++
T Consensus        59 KLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lA-s~nIvviL~GnKkDL~~~R~VtflEA  137 (214)
T KOG0086|consen   59 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEA  137 (214)
T ss_pred             EEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhC-CCcEEEEEeCChhhcChhhhhhHHHH
Confidence            58999999999999999999999999999999999999999999999987653 46788999999999999999999999


Q ss_pred             HHHHHHhCCcEEEeecCCCCChhHHhhhh
Q psy785           81 ASLARAFACTFLETSAKAKVNSWLCVECT  109 (112)
Q Consensus        81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l  109 (112)
                      ..++++..+.+.++||++|.||+|.|-..
T Consensus       138 s~FaqEnel~flETSa~TGeNVEEaFl~c  166 (214)
T KOG0086|consen  138 SRFAQENELMFLETSALTGENVEEAFLKC  166 (214)
T ss_pred             HhhhcccceeeeeecccccccHHHHHHHH
Confidence            99999999999999999999999999764

>cd04175 Rap1 Rap1 subgroup

Probab=99.96  E-value=2e-28  Score=146.50  Aligned_cols=110  Identities=80%  Similarity=1.129  Sum_probs=99.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|||++++.+++.+..|+..+.......+.|+++++||+|+.+.+..+.....
T Consensus        51 l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~  130 (164)
T cd04175          51 LEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQ  130 (164)
T ss_pred             EEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHH
Confidence            67999999999999999999999999999999999999999999999987655578999999999999876666667777


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++.++++++++||++|.|++++|+++.+
T Consensus       131 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  160 (164)
T cd04175         131 NLARQWGCAFLETSAKAKINVNEIFYDLVR  160 (164)
T ss_pred             HHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence            888888899999999999999999999864

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04122 Rab14 Rab14 subfamily

Probab=99.96  E-value=2e-28  Score=146.82  Aligned_cols=109  Identities=36%  Similarity=0.466  Sum_probs=98.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..+++.+++++|++++|||++++.+++.+..|+..+.... ....|+++|+||+|+.+.+.++.++..
T Consensus        53 l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~  131 (166)
T cd04122          53 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLEAQRDVTYEEAK  131 (166)
T ss_pred             EEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCcCHHHHH
Confidence            6899999999999999999999999999999999999999999998886653 256899999999999877777788888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++..+++++++||++|.|+.++|..+..
T Consensus       132 ~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122         132 QFADENGLLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             HHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            899888999999999999999999998763

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.96  E-value=1.5e-28  Score=150.93  Aligned_cols=107  Identities=21%  Similarity=0.306  Sum_probs=93.5

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCC--------
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEE--------   71 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~--------   71 (112)
                      .+++|||||++++  +.+.+++++|++++|||++++.|++.+. .|+..+....  .+.|+++||||+|+..        
T Consensus        67 ~l~iwDTaG~~~~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~  142 (195)
T cd01873          67 SLRLWDTFGDHDK--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNR  142 (195)
T ss_pred             EEEEEeCCCChhh--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhh
Confidence            3789999999863  4567899999999999999999999996 5998887654  4689999999999863        


Q ss_pred             -----------cccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           72 -----------ERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        72 -----------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                                 .+.++.+++++++++++++++||||++|.||+++|+.++.
T Consensus       143 ~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~  193 (195)
T cd01873         143 ARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIR  193 (195)
T ss_pred             cccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHH
Confidence                       3567888999999999999999999999999999999875

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04144 Ras2 Ras2 subfamily

Probab=99.96  E-value=4.5e-28  Score=148.31  Aligned_cols=110  Identities=54%  Similarity=0.851  Sum_probs=98.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCCcEEEEeeCCCCCCcccccHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD--TDDVPMVLVGNKCDLEEERVVGKEQ   79 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~   79 (112)
                      +++|||||+++|..++..+++++|++++|||++++.+++.+..|+..+.....  ..+.|+++|+||+|+...+.+....
T Consensus        49 l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~  128 (190)
T cd04144          49 LEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEE  128 (190)
T ss_pred             EEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHH
Confidence            68999999999999999999999999999999999999999999998876543  2568999999999997767777777


Q ss_pred             HHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           80 GASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..++++.++++++++||++|.|++++|+++.+
T Consensus       129 ~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~  160 (190)
T cd04144         129 GAALARRLGCEFIEASAKTNVNVERAFYTLVR  160 (190)
T ss_pred             HHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence            77888888999999999999999999999864

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04176 Rap2 Rap2 subgroup

Probab=99.96  E-value=6.3e-28  Score=144.13  Aligned_cols=110  Identities=55%  Similarity=0.857  Sum_probs=98.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||+++|..++..+++++|++++|||++++.+++.+..|+..+.+.....++|+++++||+|+.+.+.+...+..
T Consensus        51 l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~  130 (163)
T cd04176          51 LEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGR  130 (163)
T ss_pred             EEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHH
Confidence            67999999999999999999999999999999999999999999999887654467999999999999765666666677


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++...+++++++||++|.|+.++|++++.
T Consensus       131 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04176         131 ALAEEWGCPFMETSAKSKTMVNELFAEIVR  160 (163)
T ss_pred             HHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence            788778889999999999999999999874

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.96  E-value=6.6e-28  Score=148.70  Aligned_cols=110  Identities=27%  Similarity=0.442  Sum_probs=98.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCCcEEEEeeCCCCCCcccccHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD---TDDVPMVLVGNKCDLEEERVVGKE   78 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~   78 (112)
                      +++|||||+++|..+++.++++++++++|||++++.+++.+..|+..+.....   ..++|+++|+||+|+.+.+....+
T Consensus        52 l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~  131 (201)
T cd04107          52 LQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGE  131 (201)
T ss_pred             EEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHH
Confidence            68999999999999999999999999999999999999999999988865432   256899999999999765667788


Q ss_pred             HHHHHHHHhC-CcEEEeecCCCCChhHHhhhhcc
Q psy785           79 QGASLARAFA-CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        79 ~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +..++++..+ .+++++||++|.|++++|+++++
T Consensus       132 ~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~  165 (201)
T cd04107         132 QMDQFCKENGFIGWFETSAKEGINIEEAMRFLVK  165 (201)
T ss_pred             HHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHH
Confidence            8889999888 59999999999999999999874

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.96  E-value=4.8e-28  Score=149.16  Aligned_cols=106  Identities=29%  Similarity=0.501  Sum_probs=93.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      ++||||+|+++|..+++.++++++++++|||+++..+++.+..|+..+.+..  .++|+++||||+|+.. +.+..+. .
T Consensus        46 l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~-~~v~~~~-~  121 (200)
T smart00176       46 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKD-RKVKAKS-I  121 (200)
T ss_pred             EEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC--CCCCEEEEEECccccc-ccCCHHH-H
Confidence            6899999999999999999999999999999999999999999999998764  5799999999999864 3333333 4


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+++..++++++|||++|.||.++|++++.
T Consensus       122 ~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~  151 (200)
T smart00176      122 TFHRKKNLQYYDISAKSNYNFEKPFLWLAR  151 (200)
T ss_pred             HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            677778899999999999999999999874

Ran is involved in the active transport of proteins through nuclear pores.

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.96  E-value=4.9e-28  Score=146.53  Aligned_cols=108  Identities=25%  Similarity=0.428  Sum_probs=94.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCc--------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEE--------   72 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~--------   72 (112)
                      +++|||+|+++|..++..+++++|++++|||++++++++.+. .|+..+....  .+.|+++|+||+|+.+.        
T Consensus        51 l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~l~  128 (175)
T cd01874          51 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDLRDDPSTIEKLA  128 (175)
T ss_pred             EEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhChhhHHHhh
Confidence            689999999999999999999999999999999999999996 5988887653  46899999999998543        


Q ss_pred             ----ccccHHHHHHHHHHhC-CcEEEeecCCCCChhHHhhhhcc
Q psy785           73 ----RVVGKEQGASLARAFA-CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        73 ----~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                          +.++.+++++++++.+ +.++++||++|.|++++|+.++.
T Consensus       129 ~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~  172 (175)
T cd01874         129 KNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAIL  172 (175)
T ss_pred             hccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHH
Confidence                4566677788888887 69999999999999999998864

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>PTZ00369 Ras-like protein; Provisional

Probab=99.96  E-value=1.3e-27  Score=146.08  Aligned_cols=110  Identities=56%  Similarity=0.889  Sum_probs=98.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||+++|..++..+++++|++++|||++++++++.+..|+..+.+.....+.|+++++||+|+.+.+.+...+..
T Consensus        55 l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~  134 (189)
T PTZ00369         55 LDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQ  134 (189)
T ss_pred             EEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHH
Confidence            67999999999999999999999999999999999999999999999887655568999999999999766666677777


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +++..++++++++||++|.|+.++|+++++
T Consensus       135 ~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~  164 (189)
T PTZ00369        135 ELAKSFGIPFLETSAKQRVNVDEAFYELVR  164 (189)
T ss_pred             HHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence            888888899999999999999999999864

>cd04117 Rab15 Rab15 subfamily

Probab=99.96  E-value=1.4e-27  Score=142.72  Aligned_cols=109  Identities=31%  Similarity=0.547  Sum_probs=99.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||+|++++..++..+++++|++++|||++++++++.+..|+..+.... ..+.|+++|+||.|+.+.+.+..++..
T Consensus        51 l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~  129 (161)
T cd04117          51 IQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGN  129 (161)
T ss_pred             EEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHH
Confidence            6899999999999999999999999999999999999999999999887653 246899999999999776777788888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+++..+++++++||++|.|++++|++|++
T Consensus       130 ~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~  159 (161)
T cd04117         130 KLAKEYGMDFFETSACTNSNIKESFTRLTE  159 (161)
T ss_pred             HHHHHcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence            899888999999999999999999999875

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04109 Rab28 Rab28 subfamily

Probab=99.96  E-value=1.5e-27  Score=148.49  Aligned_cols=110  Identities=29%  Similarity=0.362  Sum_probs=99.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC--CCCcEEEEeeCCCCCCcccccHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT--DDVPMVLVGNKCDLEEERVVGKEQ   79 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~   79 (112)
                      +++|||||++.+..++..+++++|++++|||++++++++.+..|+..+.+....  .+.|+++|+||+|+.+.+.+..+.
T Consensus        52 ~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~  131 (215)
T cd04109          52 LQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDK  131 (215)
T ss_pred             EEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHH
Confidence            689999999999999999999999999999999999999999999999876532  356899999999997667777788


Q ss_pred             HHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           80 GASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ...+++.++++++++||++|.|++++|++++.
T Consensus       132 ~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~  163 (215)
T cd04109         132 HARFAQANGMESCLVSAKTGDRVNLLFQQLAA  163 (215)
T ss_pred             HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            88899888999999999999999999998864

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04126 Rab20 Rab20 subfamily

Probab=99.95  E-value=1.9e-27  Score=148.24  Aligned_cols=109  Identities=29%  Similarity=0.409  Sum_probs=96.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC----------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE----------   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~----------   71 (112)
                      +.+|||||+++|..++..+++++|++++|||++++.+|+.+..|+..+.+.. ..+.|+++|+||+|+.+          
T Consensus        46 l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~-~~~~piIlVgNK~DL~~~~~~~~~~~~  124 (220)
T cd04126          46 ISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTA-NEDCLFAVVGNKLDLTEEGALAGQEKD  124 (220)
T ss_pred             EEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccccccccccccccc
Confidence            6899999999999999999999999999999999999999998888776642 35689999999999965          


Q ss_pred             ---------cccccHHHHHHHHHHhC--------------CcEEEeecCCCCChhHHhhhhcc
Q psy785           72 ---------ERVVGKEQGASLARAFA--------------CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        72 ---------~~~~~~~~~~~~~~~~~--------------~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                               .+.+..+++..++++.+              ++++||||++|.||+++|..+++
T Consensus       125 ~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~  187 (220)
T cd04126         125 AGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFN  187 (220)
T ss_pred             ccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHH
Confidence                     46677888999998876              68999999999999999998864

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd01865 Rab3 Rab3 subfamily

Probab=99.95  E-value=2.7e-27  Score=141.87  Aligned_cols=109  Identities=41%  Similarity=0.679  Sum_probs=98.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++++++.+..|+..+.+.. ....|+++++||+|+.+.+....+...
T Consensus        52 ~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~  130 (165)
T cd01865          52 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGR  130 (165)
T ss_pred             EEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHH
Confidence            6899999999999999999999999999999999999999999999987653 246899999999999876666777778


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +++..++++++++||++|.|+.++|+++.+
T Consensus       131 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (165)
T cd01865         131 QLADQLGFEFFEASAKENINVKQVFERLVD  160 (165)
T ss_pred             HHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            888888999999999999999999999864

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04111 Rab39 Rab39 subfamily

Probab=99.95  E-value=2.3e-27  Score=147.31  Aligned_cols=110  Identities=33%  Similarity=0.543  Sum_probs=100.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|||++++.+++.+..|+..+.+.......|+++++||.|+.+.+.+..++..
T Consensus        54 l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~  133 (211)
T cd04111          54 LQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAE  133 (211)
T ss_pred             EEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHH
Confidence            68999999999999999999999999999999999999999999999987655456789999999999876777788888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++.++++++++||++|.|++++|+.+++
T Consensus       134 ~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~  163 (211)
T cd04111         134 KLAKDLGMKYIETSARTGDNVEEAFELLTQ  163 (211)
T ss_pred             HHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            899989999999999999999999999864

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.95  E-value=1.7e-27  Score=144.07  Aligned_cols=108  Identities=23%  Similarity=0.425  Sum_probs=95.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCc--------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEE--------   72 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~--------   72 (112)
                      +++|||||+++|..+++.+++++|++++|||++++++++.+. .|+..+....  .+.|+++|+||+|+.+.        
T Consensus        51 l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~  128 (174)
T cd01871          51 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLK  128 (174)
T ss_pred             EEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhccChhhHHHHh
Confidence            689999999999999999999999999999999999999985 6888876643  57999999999999542        


Q ss_pred             ----ccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           73 ----RVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        73 ----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                          +.++.+++.+++++++. ++++|||++|.|++++|+.++.
T Consensus       129 ~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~  172 (174)
T cd01871         129 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIR  172 (174)
T ss_pred             hccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHH
Confidence                24677888889998885 9999999999999999998864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.95  E-value=2.5e-27  Score=141.28  Aligned_cols=108  Identities=32%  Similarity=0.503  Sum_probs=98.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|||++++++++.+..|+..+.+..  .++|+++|+||+|+.....+..++..
T Consensus        53 ~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~  130 (162)
T cd04106          53 LMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAE  130 (162)
T ss_pred             EEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHH
Confidence            7899999999999999999999999999999999999999999999887643  57999999999999776677777788


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+++..+++++++||++|.|++++|+++.+
T Consensus       131 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (162)
T cd04106         131 ALAKRLQLPLFRTSVKDDFNVTELFEYLAE  160 (162)
T ss_pred             HHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            888888999999999999999999999875

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.95  E-value=3e-27  Score=141.09  Aligned_cols=110  Identities=48%  Similarity=0.817  Sum_probs=98.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..+++.+++++|++++|+|++++.+++.+..|+..+.+.....+.|+++++||+|+...+.+..+...
T Consensus        52 ~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~  131 (164)
T cd04145          52 LDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQ  131 (164)
T ss_pred             EEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHH
Confidence            67999999999999999999999999999999999999999999998887654467899999999999766666666777


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++..+++++++||++|.|++++|++++.
T Consensus       132 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  161 (164)
T cd04145         132 ELARKLKIPYIETSAKDRLNVDKAFHDLVR  161 (164)
T ss_pred             HHHHHcCCcEEEeeCCCCCCHHHHHHHHHH
Confidence            888888899999999999999999999864

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.95  E-value=3.5e-27  Score=140.94  Aligned_cols=110  Identities=61%  Similarity=0.965  Sum_probs=99.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..+++.+++++|++++|+|++++++++.+..|...+.+.....+.|+++++||+|+.+.+....+...
T Consensus        50 l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~  129 (164)
T smart00173       50 LDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGK  129 (164)
T ss_pred             EEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHH
Confidence            67999999999999999999999999999999999999999999988877655567899999999999766666677777


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+++..+.+++++||++|.|++++|+++++
T Consensus       130 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173      130 ELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             HHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            888888899999999999999999999874

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04140 ARHI_like ARHI subfamily

Probab=99.95  E-value=5.2e-27  Score=140.61  Aligned_cols=110  Identities=39%  Similarity=0.672  Sum_probs=97.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC--CCCcEEEEeeCCCCCCcccccHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT--DDVPMVLVGNKCDLEEERVVGKEQ   79 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~   79 (112)
                      +++|||||++++..++..++++++++++|||++++.+++.+..|+..+.+....  .++|+++|+||+|+.+.+.+....
T Consensus        51 l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~  130 (165)
T cd04140          51 LQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNE  130 (165)
T ss_pred             EEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHH
Confidence            689999999999999999999999999999999999999999998887765432  578999999999997656666677


Q ss_pred             HHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           80 GASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ...++..++++++++||++|.|++++|+++++
T Consensus       131 ~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~  162 (165)
T cd04140         131 GAACATEWNCAFMETSAKTNHNVQELFQELLN  162 (165)
T ss_pred             HHHHHHHhCCcEEEeecCCCCCHHHHHHHHHh
Confidence            77788888899999999999999999999875

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.95  E-value=4.1e-27  Score=141.03  Aligned_cols=109  Identities=37%  Similarity=0.600  Sum_probs=98.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|||++++++++.+..|+..+.+.. ..+.|+++++||+|+.+.+.+..++..
T Consensus        53 ~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~  131 (166)
T cd01869          53 LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQ  131 (166)
T ss_pred             EEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHH
Confidence            6899999999999999999999999999999999999999999999987753 256899999999999776677778888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+++..+++++++||++|.|++++|+.+.+
T Consensus       132 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869         132 EFADELGIPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             HHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence            888888999999999999999999998864

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.95  E-value=7.4e-27  Score=140.18  Aligned_cols=109  Identities=42%  Similarity=0.672  Sum_probs=98.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|||++++.+++.+..|+..+.+.. ..+.|+++++||+|+.+.+....++..
T Consensus        54 l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~  132 (167)
T cd01867          54 LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHA-SEDVERMLVGNKCDMEEKRVVSKEEGE  132 (167)
T ss_pred             EEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHH
Confidence            6899999999999999999999999999999999999999999999987753 356899999999999876666777788


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+++.++++++++||++|.|++++|+++.+
T Consensus       133 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  162 (167)
T cd01867         133 ALADEYGIKFLETSAKANINVEEAFFTLAK  162 (167)
T ss_pred             HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            888888999999999999999999999864

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.95  E-value=6.6e-27  Score=140.99  Aligned_cols=110  Identities=25%  Similarity=0.368  Sum_probs=94.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc--ccHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV--VGKEQ   79 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~   79 (112)
                      +++|||||+++|..++..+++++|++++|||++++.+++.+..|+..+.+.......|+++|+||+|+.+...  ...+.
T Consensus        51 l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~  130 (170)
T cd04108          51 LQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQD  130 (170)
T ss_pred             EEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHH
Confidence            7899999999999999999999999999999999999999999999987654444578999999999865333  23556


Q ss_pred             HHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           80 GASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ...++.+++.+++++||++|.|++++|+.+++
T Consensus       131 ~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~  162 (170)
T cd04108         131 AIKLAAEMQAEYWSVSALSGENVREFFFRVAA  162 (170)
T ss_pred             HHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            66777778889999999999999999998864

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.95  E-value=9.5e-27  Score=139.17  Aligned_cols=110  Identities=23%  Similarity=0.407  Sum_probs=98.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC----CCCcEEEEeeCCCCCCcccccH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT----DDVPMVLVGNKCDLEEERVVGK   77 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~~p~ivv~nK~D~~~~~~~~~   77 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.+....    .+.|+++|+||+|+.++.....
T Consensus        51 l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~  130 (168)
T cd04119          51 VNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSE  130 (168)
T ss_pred             EEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCH
Confidence            689999999999999999999999999999999999999999999999876543    5689999999999976566677


Q ss_pred             HHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           78 EQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        78 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++.+.++++.+++++++||++|.|++++|+++.+
T Consensus       131 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  164 (168)
T cd04119         131 DEGRLWAESKGFKYFETSACTGEGVNEMFQTLFS  164 (168)
T ss_pred             HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            7777888888899999999999999999999864

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.95  E-value=3.9e-27  Score=147.00  Aligned_cols=107  Identities=31%  Similarity=0.448  Sum_probs=93.2

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      ++++|||+|+++|..++..++++++++++|||++++.+++.+..|+..+.+..  .++|+++||||+|+.+ +.+..+..
T Consensus        63 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~-~~v~~~~~  139 (219)
T PLN03071         63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAKQV  139 (219)
T ss_pred             EEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhh-ccCCHHHH
Confidence            37899999999999999999999999999999999999999999999998754  5799999999999864 33334444


Q ss_pred             HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           81 ASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                       ++++..++++++|||++|.|++++|+++++
T Consensus       140 -~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~  169 (219)
T PLN03071        140 -TFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (219)
T ss_pred             -HHHHhcCCEEEEcCCCCCCCHHHHHHHHHH
Confidence             667777889999999999999999999864

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.95  E-value=7.2e-27  Score=139.34  Aligned_cols=109  Identities=34%  Similarity=0.611  Sum_probs=101.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++||++|+++|..+...+++++|+++++||+++++|++.+..|+..+..... .+.|++++|||.|+.+.+.++.++++
T Consensus        50 l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~  128 (162)
T PF00071_consen   50 LEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQ  128 (162)
T ss_dssp             EEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccceeeeccccccccccchhhHHH
Confidence            78999999999999999999999999999999999999999999999988764 46899999999999877888899999


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +++++++.+++++||+++.|+.++|..+++
T Consensus       129 ~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~  158 (162)
T PF00071_consen  129 EFAKELGVPYFEVSAKNGENVKEIFQELIR  158 (162)
T ss_dssp             HHHHHTTSEEEEEBTTTTTTHHHHHHHHHH
T ss_pred             HHHHHhCCEEEEEECCCCCCHHHHHHHHHH
Confidence            999999999999999999999999998875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>KOG0095|consensus

Probab=99.95  E-value=6.5e-28  Score=139.26  Aligned_cols=109  Identities=35%  Similarity=0.485  Sum_probs=100.1

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      ++++|||+||++|+++..+||+.|++++++||++...+|+-+..|+.++.++.. ..+--|+||||+|+.++++++.+..
T Consensus        57 klqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~drrevp~qig  135 (213)
T KOG0095|consen   57 KLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADRREVPQQIG  135 (213)
T ss_pred             EEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhhhhhhHHHH
Confidence            489999999999999999999999999999999999999999999999998864 3466788999999998889988888


Q ss_pred             HHHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785           81 ASLARAFACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      +++.....+.++++||+...|++.+|..+.
T Consensus       136 eefs~~qdmyfletsakea~nve~lf~~~a  165 (213)
T KOG0095|consen  136 EEFSEAQDMYFLETSAKEADNVEKLFLDLA  165 (213)
T ss_pred             HHHHHhhhhhhhhhcccchhhHHHHHHHHH
Confidence            999988888999999999999999998764

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.95  E-value=1.7e-26  Score=137.31  Aligned_cols=109  Identities=50%  Similarity=0.831  Sum_probs=97.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..++++++++++|+|+++..+++.+..|+..+.+.....+.|+++|+||+|+.+ +.....+..
T Consensus        51 ~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~  129 (162)
T cd04138          51 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQ  129 (162)
T ss_pred             EEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHH
Confidence            5789999999999999999999999999999999999999999999988776556799999999999865 445566777


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++..+++++++||++|.|++++|+++++
T Consensus       130 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (162)
T cd04138         130 DLAKSYGIPYIETSAKTRQGVEEAFYTLVR  159 (162)
T ss_pred             HHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence            788888999999999999999999999864

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04112 Rab26 Rab26 subfamily

Probab=99.95  E-value=1.5e-26  Score=141.73  Aligned_cols=109  Identities=35%  Similarity=0.633  Sum_probs=97.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      ++||||||++++...+..+++++|++++|+|++++++++.+..|+..+.+.. ..++|+++++||+|+..++.+..++..
T Consensus        52 ~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~  130 (191)
T cd04112          52 LQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGE  130 (191)
T ss_pred             EEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHH
Confidence            6899999999999999999999999999999999999999999999988753 246899999999999766666677788


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++..++++++++||++|.|++++|+++.+
T Consensus       131 ~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112         131 RLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            888888999999999999999999999864

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04128 Spg1 Spg1p

Probab=99.95  E-value=9.8e-27  Score=141.62  Aligned_cols=109  Identities=21%  Similarity=0.330  Sum_probs=91.5

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc-----ccc
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE-----RVV   75 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~-----~~~   75 (112)
                      .+++|||+|+++|..++..+++++|++++|||++++.+++.+..|+..+.+... ...| ++||||+|+...     ...
T Consensus        50 ~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~  127 (182)
T cd04128          50 TFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEE  127 (182)
T ss_pred             EEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhh
Confidence            378999999999999999999999999999999999999999999999877542 3456 678999998521     111


Q ss_pred             cHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           76 GKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..++.+++++..+++++++||++|.|++++|+++.+
T Consensus       128 ~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~  163 (182)
T cd04128         128 ITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLA  163 (182)
T ss_pred             hHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            234566788888899999999999999999998864

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04110 Rab35 Rab35 subfamily

Probab=99.95  E-value=2.3e-26  Score=141.70  Aligned_cols=108  Identities=35%  Similarity=0.529  Sum_probs=97.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||||++++..++..++++++++++|||++++++++.+..|+..+....  ...|+++|+||+|+.+.+.+...+..
T Consensus        57 l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~  134 (199)
T cd04110          57 LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAY  134 (199)
T ss_pred             EEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHH
Confidence            6799999999999999999999999999999999999999999999987653  56899999999999876667777888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+++..+++++++||++|.|++++|+++..
T Consensus       135 ~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~  164 (199)
T cd04110         135 KFAGQMGISLFETSAKENINVEEMFNCITE  164 (199)
T ss_pred             HHHHHcCCEEEEEECCCCcCHHHHHHHHHH
Confidence            888888999999999999999999999764

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.95  E-value=1.4e-26  Score=139.60  Aligned_cols=108  Identities=28%  Similarity=0.476  Sum_probs=94.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCcc-------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEER-------   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~-------   73 (112)
                      +++|||||+++|..++..+++++|++++|||++++++++.+. .|+..+.+..  .+.|+++|+||+|+.+..       
T Consensus        48 ~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~  125 (174)
T smart00174       48 LGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELS  125 (174)
T ss_pred             EEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhh
Confidence            689999999999999999999999999999999999999985 5998887753  579999999999986422       


Q ss_pred             -----cccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           74 -----VVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 -----~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                           .++.++..++++..+. +++++||++|.|++++|+.+++
T Consensus       126 ~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~  169 (174)
T smart00174      126 KQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIR  169 (174)
T ss_pred             cccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHH
Confidence                 2566777888888886 9999999999999999998864

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04134 Rho3 Rho3 subfamily

Probab=99.94  E-value=1.1e-26  Score=142.06  Aligned_cols=108  Identities=28%  Similarity=0.428  Sum_probs=92.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCcc-------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEER-------   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~-------   73 (112)
                      +++|||+|+++|..+++.++++++++++|||++++++++.+. .|+..+....  .+.|+++|+||+|+...+       
T Consensus        50 l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~--~~~piilvgNK~Dl~~~~~~~~~~~  127 (189)
T cd04134          50 LSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC--PGVKLVLVALKCDLREARNERDDLQ  127 (189)
T ss_pred             EEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccChhhHHHHh
Confidence            689999999999999999999999999999999999999886 5988887653  578999999999996533       


Q ss_pred             -----cccHHHHHHHHHHhC-CcEEEeecCCCCChhHHhhhhcc
Q psy785           74 -----VVGKEQGASLARAFA-CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 -----~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                           .+..++...++...+ +++++|||++|.|++++|+++++
T Consensus       128 ~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~  171 (189)
T cd04134         128 RYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAAR  171 (189)
T ss_pred             hccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHH
Confidence                 234555667777766 68999999999999999999864

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04177 RSR1 RSR1 subgroup

Probab=99.94  E-value=2.9e-26  Score=137.71  Aligned_cols=110  Identities=57%  Similarity=0.903  Sum_probs=98.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||+++|..+++.++++++++++|+|.+++++++.+..|...+.+.....+.|+++++||+|+.+.+....++..
T Consensus        51 ~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~  130 (168)
T cd04177          51 LEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGV  130 (168)
T ss_pred             EEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHH
Confidence            58999999999999999999999999999999999999999999998887655568999999999999776666677777


Q ss_pred             HHHHHhC-CcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFA-CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+++.++ .+++++||++|.|++++|+++..
T Consensus       131 ~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~  161 (168)
T cd04177         131 SLSQQWGNVPFYETSARKRTNVDEVFIDLVR  161 (168)
T ss_pred             HHHHHcCCceEEEeeCCCCCCHHHHHHHHHH
Confidence            7777777 79999999999999999999874

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04149 Arf6 Arf6 subfamily

Probab=99.94  E-value=1.4e-26  Score=139.37  Aligned_cols=109  Identities=13%  Similarity=0.212  Sum_probs=89.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..+++.+++++|++++|+|++++.+++....|+..+.......+.|+++|+||+|+.+  .....+..
T Consensus        55 ~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~  132 (168)
T cd04149          55 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQ  132 (168)
T ss_pred             EEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHH
Confidence            7899999999999999999999999999999999999998888877776543335689999999999864  23445555


Q ss_pred             HHHHH-----hCCcEEEeecCCCCChhHHhhhhccC
Q psy785           82 SLARA-----FACTFLETSAKAKVNSWLCVECTNDQ  112 (112)
Q Consensus        82 ~~~~~-----~~~~~~~~Sa~~~~~v~~~~~~l~~~  112 (112)
                      ++...     ..++++++||++|.|+.++|++|.++
T Consensus       133 ~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~~  168 (168)
T cd04149         133 EKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSSN  168 (168)
T ss_pred             HHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhcC
Confidence            54321     23478999999999999999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.94  E-value=2.5e-26  Score=137.03  Aligned_cols=105  Identities=22%  Similarity=0.424  Sum_probs=90.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC--cccccHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE--ERVVGKEQ   79 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~   79 (112)
                      +++|||+|++.     ..+++++|++++|||+++++||+.+..|+..+.......++|+++||||.|+..  .+.+..++
T Consensus        49 l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~  123 (158)
T cd04103          49 LLIRDEGGAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDAR  123 (158)
T ss_pred             EEEEECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHH
Confidence            68999999985     346689999999999999999999999999998876556789999999999852  46677777


Q ss_pred             HHHHHHHh-CCcEEEeecCCCCChhHHhhhhcc
Q psy785           80 GASLARAF-ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        80 ~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..+++++. ++++++|||++|.||+++|+.+++
T Consensus       124 ~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~  156 (158)
T cd04103         124 ARQLCADMKRCSYYETCATYGLNVERVFQEAAQ  156 (158)
T ss_pred             HHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHh
Confidence            88888776 589999999999999999999874

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.94  E-value=3.4e-26  Score=136.66  Aligned_cols=108  Identities=31%  Similarity=0.426  Sum_probs=95.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++.+..+++.+++++|++++|+|++++++++.+..|+..+....  .+.|+++|+||+|+.+...+......
T Consensus        54 l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~  131 (164)
T cd04101          54 LFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQ  131 (164)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHH
Confidence            6899999999999999999999999999999999999999999999887754  56899999999999766666666666


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+....+++++++||++|.|++++|+.+++
T Consensus       132 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  161 (164)
T cd04101         132 AFAQANQLKFFKTSALRGVGYEEPFESLAR  161 (164)
T ss_pred             HHHHHcCCeEEEEeCCCCCChHHHHHHHHH
Confidence            777777889999999999999999998864

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.94  E-value=1.9e-26  Score=138.46  Aligned_cols=106  Identities=29%  Similarity=0.493  Sum_probs=92.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||+|++++..++..++.++|++++|||++++++++.+..|+..+.+...  ++|+++|+||+|+.+ +... ....
T Consensus        51 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~piiiv~nK~Dl~~-~~~~-~~~~  126 (166)
T cd00877          51 FNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG--NIPIVLCGNKVDIKD-RKVK-AKQI  126 (166)
T ss_pred             EEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCcEEEEEEchhccc-ccCC-HHHH
Confidence            68999999999998999999999999999999999999999999999988653  799999999999973 3332 3344


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++..+++++++||++|.|++++|++|++
T Consensus       127 ~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~  156 (166)
T cd00877         127 TFHRKKNLQYYEISAKSNYNFEKPFLWLAR  156 (166)
T ss_pred             HHHHHcCCEEEEEeCCCCCChHHHHHHHHH
Confidence            566667789999999999999999999874

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04116 Rab9 Rab9 subfamily

Probab=99.94  E-value=4.4e-26  Score=137.04  Aligned_cols=109  Identities=29%  Similarity=0.515  Sum_probs=96.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC---CCCcEEEEeeCCCCCCcccccHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT---DDVPMVLVGNKCDLEEERVVGKE   78 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~   78 (112)
                      +++|||||++++..++..+++++|++++|||++++++++.+..|...+......   .++|+++++||+|+. .+.+..+
T Consensus        56 l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~  134 (170)
T cd04116          56 LQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTE  134 (170)
T ss_pred             EEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHH
Confidence            689999999999999999999999999999999999999999999888765432   468999999999986 3556677


Q ss_pred             HHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           79 QGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        79 ~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +.++++++++. +++++||++|.|+.++|+.+++
T Consensus       135 ~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~  168 (170)
T cd04116         135 EAQAWCRENGDYPYFETSAKDATNVAAAFEEAVR  168 (170)
T ss_pred             HHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHh
Confidence            88889888875 8999999999999999999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd01866 Rab2 Rab2 subfamily

Probab=99.94  E-value=4.6e-26  Score=136.89  Aligned_cols=109  Identities=38%  Similarity=0.583  Sum_probs=98.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.+.. .++.|+++++||+|+.+.+..+.++..
T Consensus        55 ~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~  133 (168)
T cd01866          55 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGE  133 (168)
T ss_pred             EEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHH
Confidence            6899999999999999999999999999999999999999999999987753 257899999999999866667777888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++...+++++++||+++.|++++|.++.+
T Consensus       134 ~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~  163 (168)
T cd01866         134 AFAKEHGLIFMETSAKTASNVEEAFINTAK  163 (168)
T ss_pred             HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            888888999999999999999999988764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01868 Rab11_like Rab11-like

Probab=99.94  E-value=4.7e-26  Score=136.24  Aligned_cols=109  Identities=31%  Similarity=0.459  Sum_probs=98.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..++++++++++|+|++++.+++.+..|+..+.+... .+.|+++|+||.|+...+....++..
T Consensus        54 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~pi~vv~nK~Dl~~~~~~~~~~~~  132 (165)
T cd01868          54 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLRHLRAVPTEEAK  132 (165)
T ss_pred             EEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccccCCHHHHH
Confidence            68999999999999999999999999999999999999999999999877642 35899999999999776667777788


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++...+++++++||++|.|++++|+++++
T Consensus       133 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  162 (165)
T cd01868         133 AFAEKNGLSFIETSALDGTNVEEAFKQLLT  162 (165)
T ss_pred             HHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            888888899999999999999999999864

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01864 Rab19 Rab19 subfamily

Probab=99.94  E-value=5.9e-26  Score=135.94  Aligned_cols=109  Identities=36%  Similarity=0.529  Sum_probs=97.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++++|++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+........
T Consensus        54 l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~  132 (165)
T cd01864          54 LQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEAC  132 (165)
T ss_pred             EEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHH
Confidence            6899999999999999999999999999999999999999999999987653 357899999999999776667777888


Q ss_pred             HHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++.++. .++++||++|.|++++|+++.+
T Consensus       133 ~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~  163 (165)
T cd01864         133 TLAEKNGMLAVLETSAKESQNVEEAFLLMAT  163 (165)
T ss_pred             HHHHHcCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            88888776 7899999999999999999864

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04113 Rab4 Rab4 subfamily

Probab=99.94  E-value=5.5e-26  Score=135.48  Aligned_cols=109  Identities=31%  Similarity=0.436  Sum_probs=98.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..+++.+++++|++++|+|++++.+++.+..|+..+.... ..+.|+++++||+|+.+.+.+..++..
T Consensus        51 l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~  129 (161)
T cd04113          51 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALA-SPNIVVILVGNKSDLADQREVTFLEAS  129 (161)
T ss_pred             EEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcchhccCCHHHHH
Confidence            6899999999999999999999999999999999999999999998886653 357899999999999876777788888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+++..+++++++||+++.|+.++|++++.
T Consensus       130 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~  159 (161)
T cd04113         130 RFAQENGLLFLETSALTGENVEEAFLKCAR  159 (161)
T ss_pred             HHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            888888999999999999999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.94  E-value=4.7e-26  Score=137.11  Aligned_cols=110  Identities=31%  Similarity=0.472  Sum_probs=98.4

Q ss_pred             ceEEeCCCcccch-hhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            2 LEILDTAGTEQFT-AMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         2 ~~i~Dt~g~~~~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      +++|||+|++++. .+++.+++++|++++|||++++.+++.+..|+..+.......++|+++|+||+|+...+.+.....
T Consensus        53 ~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~  132 (170)
T cd04115          53 VQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLA  132 (170)
T ss_pred             EEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHH
Confidence            6899999999886 578889999999999999999999999999999988765556799999999999987677777788


Q ss_pred             HHHHHHhCCcEEEeecCC---CCChhHHhhhhcc
Q psy785           81 ASLARAFACTFLETSAKA---KVNSWLCVECTND  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~Sa~~---~~~v~~~~~~l~~  111 (112)
                      .++++..+++++++||++   +.+++++|..+++
T Consensus       133 ~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~  166 (170)
T cd04115         133 QRFADAHSMPLFETSAKDPSENDHVEAIFMTLAH  166 (170)
T ss_pred             HHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHH
Confidence            888888889999999999   8899999998864

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04125 RabA_like RabA-like subfamily

Probab=99.94  E-value=7.9e-26  Score=138.09  Aligned_cols=109  Identities=32%  Similarity=0.503  Sum_probs=97.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|||++++.+++.+..|+..+..... ...|+++++||+|+.+.+.+......
T Consensus        51 ~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~-~~~~~ivv~nK~Dl~~~~~v~~~~~~  129 (188)
T cd04125          51 LQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYAR-ENVIKVIVANKSDLVNNKVVDSNIAK  129 (188)
T ss_pred             EEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCCCcccccCCHHHHH
Confidence            68999999999999999999999999999999999999999999999887542 45899999999999876777777778


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++...+++++++||++|.|++++|+++.+
T Consensus       130 ~~~~~~~~~~~evSa~~~~~i~~~f~~l~~  159 (188)
T cd04125         130 SFCDSLNIPFFETSAKQSINVEEAFILLVK  159 (188)
T ss_pred             HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            888888899999999999999999998764

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.94  E-value=6e-26  Score=141.65  Aligned_cols=107  Identities=21%  Similarity=0.387  Sum_probs=92.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEeeCCCCCCc--------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEEE--------   72 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~--------   72 (112)
                      |++|||+|++.|..+++.+++++|++++|||++++++++.+ ..|...+....  ++.|+++||||+|+.+.        
T Consensus        51 L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~--~~~piiLVgnK~DL~~~~~~~~~~~  128 (222)
T cd04173          51 LNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC--PNAKVVLVGCKLDMRTDLATLRELS  128 (222)
T ss_pred             EEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEECcccccchhhhhhhh
Confidence            68999999999999999999999999999999999999998 56877765543  57999999999999642        


Q ss_pred             ----ccccHHHHHHHHHHhCC-cEEEeecCCCCC-hhHHhhhhc
Q psy785           73 ----RVVGKEQGASLARAFAC-TFLETSAKAKVN-SWLCVECTN  110 (112)
Q Consensus        73 ----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-v~~~~~~l~  110 (112)
                          ..++.++...++++.+. +++||||+++.+ |+++|+.++
T Consensus       129 ~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~  172 (222)
T cd04173         129 KQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVAT  172 (222)
T ss_pred             hccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHH
Confidence                13667788899999996 999999999985 999998765

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.94  E-value=7.3e-26  Score=137.99  Aligned_cols=108  Identities=25%  Similarity=0.409  Sum_probs=94.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCc----cccc
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEE----RVVG   76 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~----~~~~   76 (112)
                      +++|||||++++..+++.+++++|++++|||++++++++.+. .|+..+....  .+.|+++|+||.|+.+.    +.+.
T Consensus        51 l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~v~  128 (187)
T cd04132          51 LALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC--PGTPIMLVGLKTDLRKDKNLDRKVT  128 (187)
T ss_pred             EEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhhhCccccCCcC
Confidence            689999999999999999999999999999999999999985 5888776543  57899999999998643    2456


Q ss_pred             HHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           77 KEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        77 ~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++..+++..++. +++++||++|.|+.++|+.+.+
T Consensus       129 ~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~  164 (187)
T cd04132         129 PAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIE  164 (187)
T ss_pred             HHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHH
Confidence            7778888888888 9999999999999999998764

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PLN03110 Rab GTPase; Provisional

Probab=99.94  E-value=8.4e-26  Score=140.75  Aligned_cols=109  Identities=31%  Similarity=0.467  Sum_probs=98.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||+|++++..++..++++++++++|||++++.+++.+..|+..+.... ..++|+++++||+|+...+.+..+...
T Consensus        63 l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~  141 (216)
T PLN03110         63 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQ  141 (216)
T ss_pred             EEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHH
Confidence            6899999999999999999999999999999999999999999999887753 257899999999999776777777888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++...+++++++||++|.|++++|+.++.
T Consensus       142 ~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~  171 (216)
T PLN03110        142 ALAEKEGLSFLETSALEATNVEKAFQTILL  171 (216)
T ss_pred             HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            888888999999999999999999998864

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.94  E-value=9.4e-26  Score=135.07  Aligned_cols=110  Identities=39%  Similarity=0.605  Sum_probs=95.2

Q ss_pred             ceEEeCCCccc-chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCCcEEEEeeCCCCCCcccccHHH
Q psy785            2 LEILDTAGTEQ-FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEEERVVGKEQ   79 (112)
Q Consensus         2 ~~i~Dt~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~   79 (112)
                      +++|||||+++ +......+++++|++++|+|++++.+++.+..|+..+..... ..++|+++|+||+|+.+.+.+..++
T Consensus        49 ~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~  128 (165)
T cd04146          49 LEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEE  128 (165)
T ss_pred             EEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHH
Confidence            68999999985 345677789999999999999999999999999988887653 3579999999999997666677777


Q ss_pred             HHHHHHHhCCcEEEeecCCCC-ChhHHhhhhcc
Q psy785           80 GASLARAFACTFLETSAKAKV-NSWLCVECTND  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~Sa~~~~-~v~~~~~~l~~  111 (112)
                      ..++++..+.+++++||++|. |++++|+.+++
T Consensus       129 ~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~  161 (165)
T cd04146         129 GEKLASELGCLFFEVSAAEDYDGVHSVFHELCR  161 (165)
T ss_pred             HHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHH
Confidence            888888889999999999995 99999999864

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.94  E-value=1e-25  Score=135.94  Aligned_cols=107  Identities=27%  Similarity=0.486  Sum_probs=92.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCC---------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEE---------   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~---------   71 (112)
                      +++|||||++++..++..+++++|++++|||++++.+++.+. .|+..+....  .+.|+++++||+|+.+         
T Consensus        50 ~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~  127 (173)
T cd04130          50 LQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN--PKAPIILVGTQADLRTDVNVLIQLA  127 (173)
T ss_pred             EEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEeeChhhccChhHHHHHh
Confidence            689999999999999999999999999999999999999884 6888877532  4689999999999863         


Q ss_pred             ---cccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhc
Q psy785           72 ---ERVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        72 ---~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                         .+.+..++...+++..+. +++++||++|.|++++|+.++
T Consensus       128 ~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~  170 (173)
T cd04130         128 RYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAI  170 (173)
T ss_pred             hcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence               235566778888888887 999999999999999999864

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04124 RabL2 RabL2 subfamily

Probab=99.94  E-value=1.8e-25  Score=133.53  Aligned_cols=105  Identities=26%  Similarity=0.417  Sum_probs=90.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||+|+++|..+++.+++++|++++|+|++++.+++.+..|+..+.+..  .++|+++++||+|+.+.  . ..+..
T Consensus        51 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~p~ivv~nK~Dl~~~--~-~~~~~  125 (161)
T cd04124          51 VDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR--PEIPCIVVANKIDLDPS--V-TQKKF  125 (161)
T ss_pred             EEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEECccCchh--H-HHHHH
Confidence            6899999999999999999999999999999999999999999999987643  46899999999998532  1 23445


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +++...+++++++||++|.|++++|+.+++
T Consensus       126 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  155 (161)
T cd04124         126 NFAEKHNLPLYYVSAADGTNVVKLFQDAIK  155 (161)
T ss_pred             HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            566667889999999999999999998864

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>KOG0097|consensus

Probab=99.94  E-value=3e-26  Score=131.52  Aligned_cols=108  Identities=36%  Similarity=0.475  Sum_probs=98.9

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      ++++|||+||++|+...+++|+++-+.+.|||++...+++.+..|+....... .++..+++++||.|+...+.+..++.
T Consensus        61 klqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~lt-npnt~i~lignkadle~qrdv~yeea  139 (215)
T KOG0097|consen   61 KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLESQRDVTYEEA  139 (215)
T ss_pred             EEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccC-CCceEEEEecchhhhhhcccCcHHHH
Confidence            47999999999999999999999999999999999999999999998876643 25677888999999998899999999


Q ss_pred             HHHHHHhCCcEEEeecCCCCChhHHhhhh
Q psy785           81 ASLARAFACTFLETSAKAKVNSWLCVECT  109 (112)
Q Consensus        81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l  109 (112)
                      .+++++.|+.++++||++|.|+++.|-..
T Consensus       140 k~faeengl~fle~saktg~nvedafle~  168 (215)
T KOG0097|consen  140 KEFAEENGLMFLEASAKTGQNVEDAFLET  168 (215)
T ss_pred             HHHHhhcCeEEEEecccccCcHHHHHHHH
Confidence            99999999999999999999999998654

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.94  E-value=3.2e-26  Score=136.62  Aligned_cols=108  Identities=17%  Similarity=0.283  Sum_probs=85.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH-
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG-   80 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-   80 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++....|+..+.........|+++++||+|+.+..  ...+. 
T Consensus        46 ~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~  123 (159)
T cd04150          46 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVT  123 (159)
T ss_pred             EEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHH
Confidence            689999999999999999999999999999999999999988887777654333468999999999986422  22222 


Q ss_pred             HHHH----HHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           81 ASLA----RAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        81 ~~~~----~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..+.    ...++.++++||++|.|++++|++|.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150         124 DKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             HHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence            2221    112346789999999999999999876

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.94  E-value=2.7e-25  Score=132.61  Aligned_cols=109  Identities=31%  Similarity=0.464  Sum_probs=98.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||||++++...+..+++++|++++|+|++++++++....|+..+..... .+.|+++++||+|+.+.+..+.....
T Consensus        52 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~  130 (163)
T cd01860          52 FEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQ  130 (163)
T ss_pred             EEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHH
Confidence            68999999999999999999999999999999999999999999999887653 67899999999998766666777788


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +++...+++++++||++|.|+.++|+++.+
T Consensus       131 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860         131 EYADENGLLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             HHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            888888899999999999999999999875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PLN03118 Rab family protein; Provisional

Probab=99.93  E-value=3.6e-25  Score=137.45  Aligned_cols=110  Identities=43%  Similarity=0.643  Sum_probs=95.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHH-HHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      +++|||||++++..++..+++++|++++|||.+++++++.+.. |...+.......+.|+++|+||+|+...+.+..++.
T Consensus        64 l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~  143 (211)
T PLN03118         64 LTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEG  143 (211)
T ss_pred             EEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHH
Confidence            6899999999999999999999999999999999999999876 655555443335689999999999977666777777


Q ss_pred             HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           81 ASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..++...+++++++||++|.|++++|+++.+
T Consensus       144 ~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~  174 (211)
T PLN03118        144 MALAKEHGCLFLECSAKTRENVEQCFEELAL  174 (211)
T ss_pred             HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            7888888999999999999999999999864

>cd01861 Rab6 Rab6 subfamily

Probab=99.93  E-value=4.3e-25  Score=131.47  Aligned_cols=109  Identities=33%  Similarity=0.520  Sum_probs=97.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+..... .+.|+++++||+|+.+.+....++..
T Consensus        51 l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~  129 (161)
T cd01861          51 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGE  129 (161)
T ss_pred             EEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHH
Confidence            68999999999999999999999999999999999999999999998876432 36899999999999665666677777


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..++..+++++++||+++.|++++++++.+
T Consensus       130 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~  159 (161)
T cd01861         130 KKAKELNAMFIETSAKAGHNVKELFRKIAS  159 (161)
T ss_pred             HHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            888888899999999999999999999865

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PLN03108 Rab family protein; Provisional

Probab=99.93  E-value=3.7e-25  Score=137.34  Aligned_cols=109  Identities=36%  Similarity=0.565  Sum_probs=98.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||+|++++..++..+++++|++++|||++++.+++.+..|+..+.... ....|+++++||+|+...+.++.++..
T Consensus        57 l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~  135 (210)
T PLN03108         57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGE  135 (210)
T ss_pred             EEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHH
Confidence            6899999999999999999999999999999999999999999998876653 257899999999999876777788888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++.++++++++||+++.|++++|++++.
T Consensus       136 ~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~  165 (210)
T PLN03108        136 QFAKEHGLIFMEASAKTAQNVEEAFIKTAA  165 (210)
T ss_pred             HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            999989999999999999999999998763

>cd01863 Rab18 Rab18 subfamily

Probab=99.93  E-value=5.5e-25  Score=131.10  Aligned_cols=109  Identities=37%  Similarity=0.549  Sum_probs=98.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++...+..+++++|++++|+|++++.+++.+..|+..+.++....+.|+++++||+|+.. .....++..
T Consensus        51 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~  129 (161)
T cd01863          51 LAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGL  129 (161)
T ss_pred             EEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHH
Confidence            6899999999999999999999999999999999999999999999998887667899999999999973 444566777


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++...+++++++||++|.|++++++.+.+
T Consensus       130 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863         130 KFARKHNMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             HHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            888888999999999999999999998864

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.93  E-value=1.8e-25  Score=136.00  Aligned_cols=108  Identities=16%  Similarity=0.243  Sum_probs=84.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..+|..+++++|++++|+|+++++++.....|+..+.......++|+++++||+|+....  ..++..
T Consensus        63 ~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~  140 (181)
T PLN00223         63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEIT  140 (181)
T ss_pred             EEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHH
Confidence            789999999999999999999999999999999999998887777776543333578999999999986432  233322


Q ss_pred             HHHHHh-----CCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAF-----ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~-----~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +...-.     .+.++++||++|.|+.++|++|.+
T Consensus       141 ~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~  175 (181)
T PLN00223        141 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN  175 (181)
T ss_pred             HHhCccccCCCceEEEeccCCCCCCHHHHHHHHHH
Confidence            222111     124668999999999999999875

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.93  E-value=5.9e-25  Score=139.24  Aligned_cols=110  Identities=37%  Similarity=0.580  Sum_probs=94.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc--------CCCCCcEEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK--------DTDDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--------~~~~~p~ivv~nK~D~~~~~   73 (112)
                      ++||||+|++.|..++..++.++|++++|||+++++||+.+..|+..+....        ...++|+++++||+|+...+
T Consensus        50 l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~  129 (247)
T cd04143          50 LDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPR  129 (247)
T ss_pred             EEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhcc
Confidence            6799999999999988889999999999999999999999999998887642        22468999999999997655


Q ss_pred             cccHHHHHHHHHH-hCCcEEEeecCCCCChhHHhhhhcc
Q psy785           74 VVGKEQGASLARA-FACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 ~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+..++..+++.. .++.++++||++|.|++++|+++++
T Consensus       130 ~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~  168 (247)
T cd04143         130 EVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFS  168 (247)
T ss_pred             ccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            6666777666653 3678999999999999999999864

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>KOG0395|consensus

Probab=99.93  E-value=3.9e-25  Score=135.63  Aligned_cols=111  Identities=60%  Similarity=0.947  Sum_probs=103.6

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      +++|+||+|++.+..+...++++++++++||++++..||+.+..++..+.+......+|+++||||+|+...+.++.+++
T Consensus        52 ~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg  131 (196)
T KOG0395|consen   52 MLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEG  131 (196)
T ss_pred             EEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHH
Confidence            36899999999999999999999999999999999999999999999997766667799999999999988889999999


Q ss_pred             HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           81 ASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..++..++++++|+||+.+.+++++|..|..
T Consensus       132 ~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r  162 (196)
T KOG0395|consen  132 KALARSWGCAFIETSAKLNYNVDEVFYELVR  162 (196)
T ss_pred             HHHHHhcCCcEEEeeccCCcCHHHHHHHHHH
Confidence            9999999999999999999999999998763

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.93  E-value=5.3e-25  Score=131.29  Aligned_cols=109  Identities=36%  Similarity=0.570  Sum_probs=98.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++...+..+++++|++++|||++++.+++.+..|+..+..+.. .++|+++++||+|+.+......+...
T Consensus        51 ~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~  129 (164)
T smart00175       51 LQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAE  129 (164)
T ss_pred             EEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHH
Confidence            67999999999999999999999999999999999999999999999887653 57999999999998765666777788


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++..+++++++||++|.|++++++.+.+
T Consensus       130 ~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~  159 (164)
T smart00175      130 AFAEEHGLPFFETSAKTNTNVEEAFEELAR  159 (164)
T ss_pred             HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            888888999999999999999999998864

Rab GTPases are implicated in vesicle trafficking.

>cd04123 Rab21 Rab21 subfamily

Probab=99.93  E-value=8.9e-25  Score=129.95  Aligned_cols=109  Identities=32%  Similarity=0.535  Sum_probs=97.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||||++.+..+++.+++++|++++|+|++++++++.+..|+..+..... .++|+++++||+|+...+....+...
T Consensus        51 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~  129 (162)
T cd04123          51 LAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAE  129 (162)
T ss_pred             EEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHH
Confidence            68999999999999999999999999999999999999999999998877643 37899999999999866666677777


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++.+..+.+++++||++|.|++++++++.+
T Consensus       130 ~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~  159 (162)
T cd04123         130 EYAKSVGAKHFETSAKTGKGIEELFLSLAK  159 (162)
T ss_pred             HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            788888999999999999999999999864

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.93  E-value=8e-26  Score=136.80  Aligned_cols=108  Identities=16%  Similarity=0.241  Sum_probs=86.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++++++....|+..+.+.....+.|+++|+||.|+.+..  ...+..
T Consensus        59 l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~  136 (175)
T smart00177       59 FTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEIT  136 (175)
T ss_pred             EEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHH
Confidence            689999999999999999999999999999999999999988888887654333568999999999986422  222222


Q ss_pred             HHH-----HHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLA-----RAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~-----~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +..     ....+.++++||++|.|++++|++|.+
T Consensus       137 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~  171 (175)
T smart00177      137 EKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSN  171 (175)
T ss_pred             HHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHH
Confidence            211     112345778999999999999999865

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.93  E-value=1.1e-25  Score=134.92  Aligned_cols=108  Identities=21%  Similarity=0.267  Sum_probs=90.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccH----
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGK----   77 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~----   77 (112)
                      +++|||||++++..++..+++++|++++|+|.+++.++.....|+..+....  .++|+++|+||+|+...+....    
T Consensus        46 l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~  123 (164)
T cd04162          46 MELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKE  123 (164)
T ss_pred             EEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHH
Confidence            7899999999999999999999999999999999999998888888876543  5799999999999875443321    


Q ss_pred             HHHHHHHHHhCCcEEEeecCC------CCChhHHhhhhcc
Q psy785           78 EQGASLARAFACTFLETSAKA------KVNSWLCVECTND  111 (112)
Q Consensus        78 ~~~~~~~~~~~~~~~~~Sa~~------~~~v~~~~~~l~~  111 (112)
                      ..+..++++.+++++++||++      ++||+++|+.+++
T Consensus       124 ~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~  163 (164)
T cd04162         124 LELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             hCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence            123445566678999999999      9999999999875

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04148 RGK RGK subfamily

Probab=99.93  E-value=7.6e-25  Score=136.88  Aligned_cols=108  Identities=37%  Similarity=0.550  Sum_probs=92.8

Q ss_pred             ceEEeCCCcccchhhHHhhcc-cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMK-NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      +++|||||++  ......++. ++|++++|||++++.+++.+..|+..+.+.....++|+++|+||+|+.+.+.+..++.
T Consensus        52 l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~  129 (221)
T cd04148          52 LVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEG  129 (221)
T ss_pred             EEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHH
Confidence            6899999998  233445666 9999999999999999999999999887765446799999999999977677777777


Q ss_pred             HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           81 ASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+++..++++++++||++|.||+++|+++++
T Consensus       130 ~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~  160 (221)
T cd04148         130 RACAVVFDCKFIETSAGLQHNVDELLEGIVR  160 (221)
T ss_pred             HHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            7888888899999999999999999999874

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04158 ARD1 ARD1 subfamily

Probab=99.93  E-value=5e-25  Score=132.60  Aligned_cols=108  Identities=15%  Similarity=0.244  Sum_probs=89.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++...++.+++++|++++|+|.+++.+++....|+..+.+.....+.|+++++||+|+..  ....++..
T Consensus        45 i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~  122 (169)
T cd04158          45 FTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMT  122 (169)
T ss_pred             EEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHH
Confidence            6899999999999999999999999999999999999999999988887654445689999999999863  34455555


Q ss_pred             HHHHHh------CCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAF------ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~------~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++....      .+.++++||++|.||+++|++|.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~  158 (169)
T cd04158         123 ELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSR  158 (169)
T ss_pred             HHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHH
Confidence            554322      236889999999999999999874

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04118 Rab24 Rab24 subfamily

Probab=99.93  E-value=1.2e-24  Score=133.24  Aligned_cols=108  Identities=27%  Similarity=0.395  Sum_probs=93.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc----ccccH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE----RVVGK   77 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~----~~~~~   77 (112)
                      +++|||||++++..++..+++++|++++|||++++.+++.+..|+..+....  .+.|+++|+||+|+.+.    +.+..
T Consensus        52 l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~  129 (193)
T cd04118          52 LGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE--EHCKIYLCGTKSDLIEQDRSLRQVDF  129 (193)
T ss_pred             EEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC--CCCCEEEEEEcccccccccccCccCH
Confidence            6799999999999999999999999999999999999999999999887642  46899999999998532    23445


Q ss_pred             HHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           78 EQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        78 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+..+++...+.+++++||++|.|++++|+++.+
T Consensus       130 ~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~  163 (193)
T cd04118         130 HDVQDFADEIKAQHFETSSKTGQNVDELFQKVAE  163 (193)
T ss_pred             HHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            5667777778889999999999999999999864

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.93  E-value=2.1e-24  Score=128.63  Aligned_cols=110  Identities=50%  Similarity=0.806  Sum_probs=97.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..++++++++++++|++++.+++.+..|...+.......++|+++|+||+|+.+.+........
T Consensus        50 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~  129 (164)
T cd04139          50 LNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAA  129 (164)
T ss_pred             EEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHH
Confidence            68999999999999999999999999999999999999999999998888655567999999999999764455566677


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++..++.+++++||++|.|++++|+++.+
T Consensus       130 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139         130 NLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             HHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            778888899999999999999999998864

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04142 RRP22 RRP22 subfamily

Probab=99.93  E-value=1.3e-24  Score=133.87  Aligned_cols=110  Identities=32%  Similarity=0.481  Sum_probs=89.3

Q ss_pred             ceEEeCCCcccchh--------hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCCcEEEEeeCCCCCC
Q psy785            2 LEILDTAGTEQFTA--------MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD--TDDVPMVLVGNKCDLEE   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~--------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~~~   71 (112)
                      +++|||||.+++..        .....++++|++++|||+++++|++.+..|+..+.+...  ..++|+++|+||+|+.+
T Consensus        51 l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~  130 (198)
T cd04142          51 LHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR  130 (198)
T ss_pred             EEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence            67999999765421        133457899999999999999999999999988877642  35799999999999976


Q ss_pred             cccccHHHHHHHHH-HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           72 ERVVGKEQGASLAR-AFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        72 ~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+....+..+.++. .++++++++||++|.|++++|+.++.
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~  171 (198)
T cd04142         131 HRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLI  171 (198)
T ss_pred             cccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHH
Confidence            56666666666654 45889999999999999999998764

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>KOG0393|consensus

Probab=99.92  E-value=4.1e-25  Score=133.91  Aligned_cols=107  Identities=30%  Similarity=0.473  Sum_probs=95.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEeeCCCCCCc--------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEEE--------   72 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~--------   72 (112)
                      +.+|||+||++|..+++..|+++|+++++|++.++.|++++ ..|++++..++  ++.|+++||+|.|+..+        
T Consensus        55 L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~  132 (198)
T KOG0393|consen   55 LGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDDPSTLEKLQ  132 (198)
T ss_pred             EeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhCHHHHHHHH
Confidence            68999999999999898899999999999999999999997 67999999987  78999999999999743        


Q ss_pred             ----ccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhc
Q psy785           73 ----RVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        73 ----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                          ..+..++....+++.|. .++||||+++.|+.++|+..+
T Consensus       133 ~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~  175 (198)
T KOG0393|consen  133 RQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAI  175 (198)
T ss_pred             hccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHH
Confidence                24667778889999884 999999999999999998764

>cd04154 Arl2 Arl2 subfamily

Probab=99.92  E-value=1.9e-24  Score=130.47  Aligned_cols=108  Identities=16%  Similarity=0.203  Sum_probs=89.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++.+..++..+++++|++++|+|++++.+++....|+..+.......+.|+++|+||+|+.+..  ..++..
T Consensus        60 l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~  137 (173)
T cd04154          60 LNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIR  137 (173)
T ss_pred             EEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHH
Confidence            689999999999999999999999999999999999999888888877654334679999999999986432  344444


Q ss_pred             HHHH-----HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLAR-----AFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+..     ..+++++++||++|.|++++|+++.+
T Consensus       138 ~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         138 EALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             HHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence            4432     23568999999999999999999875

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.92  E-value=3.1e-24  Score=132.10  Aligned_cols=110  Identities=41%  Similarity=0.620  Sum_probs=92.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC-cccccHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE-ERVVGKEQG   80 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~   80 (112)
                      +++|||||+++|..+++.++.++|++++|+|++++.+++.+..|+..+.+.....++|+++++||+|+.+ .+.+..+..
T Consensus        49 l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~  128 (198)
T cd04147          49 LDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDA  128 (198)
T ss_pred             EEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHH
Confidence            6899999999999999999999999999999999999999999999988876656799999999999865 244444444


Q ss_pred             HHHHH-HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           81 ASLAR-AFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        81 ~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+... ..+.+++++||++|.|++++|+++++
T Consensus       129 ~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  160 (198)
T cd04147         129 LSTVELDWNCGFVETSAKDNENVLEVFKELLR  160 (198)
T ss_pred             HHHHHhhcCCcEEEecCCCCCCHHHHHHHHHH
Confidence            43333 34678999999999999999999864

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04135 Tc10 TC10 subfamily

Probab=99.92  E-value=2.5e-24  Score=129.72  Aligned_cols=108  Identities=25%  Similarity=0.435  Sum_probs=93.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCc--------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEE--------   72 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~--------   72 (112)
                      +++|||||++.|..++..+++++|++++|+|++++.+++.+. .|+..+...  ..+.|+++++||+|+.+.        
T Consensus        50 ~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~  127 (174)
T cd04135          50 LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLN  127 (174)
T ss_pred             EEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHh
Confidence            679999999999999999999999999999999999999885 588777654  367999999999998542        


Q ss_pred             ----ccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           73 ----RVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        73 ----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                          +.++.+++..+++..+. ++++|||++|.|++++|+.+++
T Consensus       128 ~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~  171 (174)
T cd04135         128 DMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAIL  171 (174)
T ss_pred             hccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHH
Confidence                24566777888888886 8999999999999999998864

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd01862 Rab7 Rab7 subfamily

Probab=99.92  E-value=7.7e-24  Score=127.22  Aligned_cols=110  Identities=31%  Similarity=0.529  Sum_probs=95.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC---CCCcEEEEeeCCCCCCcccccHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT---DDVPMVLVGNKCDLEEERVVGKE   78 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~   78 (112)
                      +++|||||++.+..++..+++++|++++++|++++.+++....|...+......   .++|+++++||+|+..++....+
T Consensus        51 ~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~  130 (172)
T cd01862          51 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTK  130 (172)
T ss_pred             EEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHH
Confidence            679999999999999999999999999999999999999988898877665432   37899999999999755555677


Q ss_pred             HHHHHHHHhC-CcEEEeecCCCCChhHHhhhhcc
Q psy785           79 QGASLARAFA-CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        79 ~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ....+++..+ .+++++||++|.|++++|+++.+
T Consensus       131 ~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~  164 (172)
T cd01862         131 KAQQWCQSNGNIPYFETSAKEAINVEQAFETIAR  164 (172)
T ss_pred             HHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHH
Confidence            7777888777 69999999999999999998764

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04157 Arl6 Arl6 subfamily

Probab=99.92  E-value=9e-24  Score=125.85  Aligned_cols=109  Identities=21%  Similarity=0.255  Sum_probs=86.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCCcEEEEeeCCCCCCcccccHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD--TDDVPMVLVGNKCDLEEERVVGKEQ   79 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~   79 (112)
                      +++|||||++++..++..+++++|++++|+|++++.++.....|+..+.+...  ..++|+++++||+|+.+...  ..+
T Consensus        47 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~  124 (162)
T cd04157          47 FTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVK  124 (162)
T ss_pred             EEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHH
Confidence            68999999999999999999999999999999999999888888887766432  24799999999999864321  222


Q ss_pred             HHHHHH-----HhCCcEEEeecCCCCChhHHhhhhccC
Q psy785           80 GASLAR-----AFACTFLETSAKAKVNSWLCVECTNDQ  112 (112)
Q Consensus        80 ~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~~~  112 (112)
                      ......     ...++++++||++|.|++++|++|.+|
T Consensus       125 ~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~~  162 (162)
T cd04157         125 ITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQAQ  162 (162)
T ss_pred             HHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhcC
Confidence            222111     123468999999999999999999876

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd00876 Ras Ras family

Probab=99.92  E-value=1.6e-23  Score=124.34  Aligned_cols=110  Identities=57%  Similarity=0.961  Sum_probs=99.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++||+||++.+..++..+++++|++++|+|++++++++.+..|...+.........|+++++||+|+.+.+....+...
T Consensus        49 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~  128 (160)
T cd00876          49 LDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGK  128 (160)
T ss_pred             EEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHH
Confidence            68999999999999999999999999999999999999999999888887655457999999999999876666777888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+...++.+++++||+++.|++++|+++.+
T Consensus       129 ~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~  158 (160)
T cd00876         129 ALAKEWGCPFIETSAKDNINIDEVFKLLVR  158 (160)
T ss_pred             HHHHHcCCcEEEeccCCCCCHHHHHHHHHh
Confidence            888888899999999999999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.91  E-value=9.3e-24  Score=126.47  Aligned_cols=109  Identities=23%  Similarity=0.357  Sum_probs=89.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++.+..++..+++++|++++|+|+++++++.....|+..+.+.....++|+++++||+|+.+.  ....+..
T Consensus        52 ~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~  129 (167)
T cd04160          52 LKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIK  129 (167)
T ss_pred             EEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHH
Confidence            68999999999999999999999999999999999889888888888876544467999999999998642  2233333


Q ss_pred             HHHHH-------hCCcEEEeecCCCCChhHHhhhhccC
Q psy785           82 SLARA-------FACTFLETSAKAKVNSWLCVECTNDQ  112 (112)
Q Consensus        82 ~~~~~-------~~~~~~~~Sa~~~~~v~~~~~~l~~~  112 (112)
                      ++...       .+++++++||++|.|+++++++|.++
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~  167 (167)
T cd04160         130 EVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVER  167 (167)
T ss_pred             HHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhcC
Confidence            33322       24589999999999999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.91  E-value=1.7e-23  Score=126.89  Aligned_cols=110  Identities=37%  Similarity=0.620  Sum_probs=97.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..++.++++++++||+++..+++.+..|+..+.+.....+.|+++++||+|+...+........
T Consensus        51 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~  130 (180)
T cd04137          51 LEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGK  130 (180)
T ss_pred             EEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHH
Confidence            58999999999999999999999999999999999999999999888887655567899999999999765666666667


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+++.++.+++++||+++.|+.++++++.+
T Consensus       131 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137         131 ELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            777778889999999999999999999864

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.91  E-value=3e-24  Score=129.01  Aligned_cols=110  Identities=15%  Similarity=0.223  Sum_probs=88.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccH-HH-
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGK-EQ-   79 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~-   79 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.+.....+.|+++|+||+|+........ .. 
T Consensus        45 ~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~  124 (167)
T cd04161          45 VCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEY  124 (167)
T ss_pred             EEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHh
Confidence            6899999999999999999999999999999999999999999999887764446799999999999975432111 11 


Q ss_pred             --HHHHHHHh--CCcEEEeecCCC------CChhHHhhhhcc
Q psy785           80 --GASLARAF--ACTFLETSAKAK------VNSWLCVECTND  111 (112)
Q Consensus        80 --~~~~~~~~--~~~~~~~Sa~~~------~~v~~~~~~l~~  111 (112)
                        ...++++.  .+.+++|||++|      .|+.+.|+||.+
T Consensus       125 ~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         125 LSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             cCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence              12233223  357888999998      899999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.91  E-value=1.6e-23  Score=126.53  Aligned_cols=108  Identities=18%  Similarity=0.183  Sum_probs=86.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH-
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG-   80 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-   80 (112)
                      +.+|||||++++...+..+++++|++++|+|+++++++.....|+..+.+.....++|+++++||+|+...  ...++. 
T Consensus        61 ~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~  138 (174)
T cd04153          61 FLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEIS  138 (174)
T ss_pred             EEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHH
Confidence            68999999999999999999999999999999999999888787777766544457999999999998642  223322 


Q ss_pred             HHHH----HHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           81 ASLA----RAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        81 ~~~~----~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..+.    ...+++++++||++|.|++++|++|.+
T Consensus       139 ~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         139 ESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             HHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence            2221    223567999999999999999999875

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.91  E-value=1.2e-23  Score=128.06  Aligned_cols=108  Identities=16%  Similarity=0.240  Sum_probs=87.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..+++.+++++|++++|+|++++.+++....|+..+.+.....++|+++++||+|+.+.  .......
T Consensus        54 l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~  131 (183)
T cd04152          54 FHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVE  131 (183)
T ss_pred             EEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHH
Confidence            68999999999999999999999999999999999999988888888876654467999999999998632  2233333


Q ss_pred             HHHH--Hh----CCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLAR--AF----ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~--~~----~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+..  ..    +++++++||++|.|++++++++.+
T Consensus       132 ~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~  167 (183)
T cd04152         132 KLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYE  167 (183)
T ss_pred             HHhCccccCCCCceEEEEeecccCCCHHHHHHHHHH
Confidence            3322  11    246899999999999999999864

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.91  E-value=1.8e-23  Score=127.24  Aligned_cols=108  Identities=16%  Similarity=0.250  Sum_probs=83.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++++++....++..+.........|+++++||.|+.+..  ...+..
T Consensus        63 ~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~  140 (182)
T PTZ00133         63 FTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVT  140 (182)
T ss_pred             EEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHH
Confidence            689999999999999999999999999999999999999888777766543223568999999999986422  222221


Q ss_pred             HHH-----HHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLA-----RAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~-----~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ...     ....+.++++||++|.|+.++|+++.+
T Consensus       141 ~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~  175 (182)
T PTZ00133        141 EKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSA  175 (182)
T ss_pred             HHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHH
Confidence            111     112235779999999999999999864

>cd04114 Rab30 Rab30 subfamily

Probab=99.91  E-value=5.9e-23  Score=123.18  Aligned_cols=109  Identities=33%  Similarity=0.452  Sum_probs=94.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... ..+.|+++++||+|+.+.+.+......
T Consensus        58 ~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~~i~v~NK~D~~~~~~i~~~~~~  136 (169)
T cd04114          58 LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-NNKVITILVGNKIDLAERREVSQQRAE  136 (169)
T ss_pred             EEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHH
Confidence            6799999999999988999999999999999999999999999998876643 246899999999999766666666566


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+.+....+++++||++|.|+.++|+.+.+
T Consensus       137 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~  166 (169)
T cd04114         137 EFSDAQDMYYLETSAKESDNVEKLFLDLAC  166 (169)
T ss_pred             HHHHHcCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            666666789999999999999999999864

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04151 Arl1 Arl1 subfamily

Probab=99.91  E-value=8.5e-24  Score=125.84  Aligned_cols=108  Identities=14%  Similarity=0.182  Sum_probs=82.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..+++.+++++|++++|+|.+++.++.....|+..+.+.....++|+++++||+|+.+..  ...+..
T Consensus        45 ~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~  122 (158)
T cd04151          45 FQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEIS  122 (158)
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHH
Confidence            689999999999999999999999999999999988887666666555443333578999999999986422  122221


Q ss_pred             H-HH----HHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 S-LA----RAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~-~~----~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      . +.    ...+++++++||++|.|++++|+++.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151         123 EKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             HHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence            1 11    112357999999999999999999875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.91  E-value=1.3e-23  Score=125.10  Aligned_cols=108  Identities=19%  Similarity=0.253  Sum_probs=86.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++...+..+++++|++++|+|++++.++.....|+..+.+.....+.|+++++||+|+....  ...+..
T Consensus        46 l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~  123 (160)
T cd04156          46 LTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEIT  123 (160)
T ss_pred             EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHH
Confidence            689999999999999999999999999999999999999888888887665433579999999999986321  122222


Q ss_pred             H------HHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 S------LARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~------~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .      ++.+.+++++++||++|.|++++|+++.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         124 RRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             HHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence            1      12223457999999999999999999875

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd01892 Miro2 Miro2 subfamily

Probab=99.91  E-value=1.2e-23  Score=126.59  Aligned_cols=107  Identities=18%  Similarity=0.184  Sum_probs=89.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+||++|++.+..++..+++++|++++|+|.+++.+++.+..|+..+..   ..++|+++|+||+|+.+.+........
T Consensus        56 l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~  132 (169)
T cd01892          56 LILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPD  132 (169)
T ss_pred             EEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHH
Confidence            67999999999999999999999999999999999999999888876533   246899999999999654443334456


Q ss_pred             HHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++.+++ .++++||++|.|++++|+.+.+
T Consensus       133 ~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~  163 (169)
T cd01892         133 EFCRKLGLPPPLHFSSKLGDSSNELFTKLAT  163 (169)
T ss_pred             HHHHHcCCCCCEEEEeccCccHHHHHHHHHH
Confidence            67777777 5799999999999999998864

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd00154 Rab Rab family

Probab=99.91  E-value=8.4e-23  Score=120.64  Aligned_cols=109  Identities=35%  Similarity=0.574  Sum_probs=96.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+||+||++.+...+..+++++|++++|+|++++++++.+..|+..+..... .+.|+++++||+|+........++..
T Consensus        51 ~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~  129 (159)
T cd00154          51 LQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDLEDQRQVSTEEAQ  129 (159)
T ss_pred             EEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccccccccccHHHHH
Confidence            68999999999999999999999999999999999999999999988877542 46899999999999744566677788


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +++...+.+++++||+++.|+++++.++.+
T Consensus       130 ~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  159 (159)
T cd00154         130 QFAKENGLLFFETSAKTGENVEELFQSLAE  159 (159)
T ss_pred             HHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence            888888899999999999999999999864

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.90  E-value=2.2e-23  Score=123.94  Aligned_cols=109  Identities=16%  Similarity=0.206  Sum_probs=89.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++.+...+..+++++|++++|+|+++++++.....|+..+.......+.|+++++||+|+....  ..++..
T Consensus        45 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~  122 (158)
T cd00878          45 FTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELI  122 (158)
T ss_pred             EEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHH
Confidence            689999999999999999999999999999999999999888888887775545679999999999987533  222222


Q ss_pred             HHHH-----HhCCcEEEeecCCCCChhHHhhhhccC
Q psy785           82 SLAR-----AFACTFLETSAKAKVNSWLCVECTNDQ  112 (112)
Q Consensus        82 ~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~~~  112 (112)
                      ....     ...++++++||++|.|++++|++|.++
T Consensus       123 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~  158 (158)
T cd00878         123 EKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQQ  158 (158)
T ss_pred             HhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhhC
Confidence            2222     234589999999999999999999864

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04129 Rho2 Rho2 subfamily

Probab=99.90  E-value=3.6e-23  Score=126.36  Aligned_cols=108  Identities=25%  Similarity=0.425  Sum_probs=91.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCC---------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEE---------   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~---------   71 (112)
                      +.+|||+|++.+......+++++++++++||++++++++.+. .|+..+.+..  .+.|+++|+||+|+.+         
T Consensus        51 l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~  128 (187)
T cd04129          51 LALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYR  128 (187)
T ss_pred             EEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccc
Confidence            679999999988877777889999999999999999999986 5999887654  4699999999999853         


Q ss_pred             -cccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           72 -ERVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        72 -~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                       .+.+..+....+++..+. ++++|||++|.|++++|+++.+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~  170 (187)
T cd04129         129 TQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATR  170 (187)
T ss_pred             cCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHH
Confidence             233445667778888885 8999999999999999999864

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.90  E-value=5.5e-23  Score=123.98  Aligned_cols=108  Identities=27%  Similarity=0.474  Sum_probs=89.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCc--------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEE--------   72 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~--------   72 (112)
                      +++|||||+++|..++..+++++|+++++||++++++++.+. .|...+....  .+.|+++++||+|+.+.        
T Consensus        51 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~i~  128 (175)
T cd01870          51 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDEHTRRELA  128 (175)
T ss_pred             EEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEeeChhcccChhhhhhhh
Confidence            689999999999988888899999999999999999998885 5888776542  47899999999998542        


Q ss_pred             ----ccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           73 ----RVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        73 ----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                          ..+......++++..+. ++++|||++|.|++++|+++.+
T Consensus       129 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~  172 (175)
T cd01870         129 KMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATR  172 (175)
T ss_pred             hccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHH
Confidence                12334556677777665 8999999999999999999864

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd00879 Sar1 Sar1 subfamily

Probab=99.90  E-value=9.4e-23  Score=124.57  Aligned_cols=109  Identities=17%  Similarity=0.249  Sum_probs=89.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++...+..++++++++++|+|.++..+++....|+..+.+.....+.|+++++||+|+..  ....++.+
T Consensus        65 ~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~  142 (190)
T cd00879          65 FKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELR  142 (190)
T ss_pred             EEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHH
Confidence            5789999999999999999999999999999999999988888888887654446799999999999863  34455555


Q ss_pred             HHHHH----------------hCCcEEEeecCCCCChhHHhhhhccC
Q psy785           82 SLARA----------------FACTFLETSAKAKVNSWLCVECTNDQ  112 (112)
Q Consensus        82 ~~~~~----------------~~~~~~~~Sa~~~~~v~~~~~~l~~~  112 (112)
                      +....                ..+++++|||++|.|++++|+++.++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         143 QALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             HHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence            54432                22478999999999999999999763

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd01893 Miro1 Miro1 subfamily

Probab=99.90  E-value=1.7e-22  Score=121.16  Aligned_cols=108  Identities=28%  Similarity=0.309  Sum_probs=85.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc--cHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEERVV--GKE   78 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~   78 (112)
                      +++|||||++.+...+..+++++|++++|+|++++.+++.+. .|...+....  .+.|+++|+||+|+.+....  ..+
T Consensus        49 ~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~~~~~~~~  126 (166)
T cd01893          49 TTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGSSQAGLEE  126 (166)
T ss_pred             EEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccchhHHHH
Confidence            679999999988888888899999999999999999999975 6888777643  47899999999999754432  122


Q ss_pred             HHHHHHHHh-C-CcEEEeecCCCCChhHHhhhhcc
Q psy785           79 QGASLARAF-A-CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        79 ~~~~~~~~~-~-~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ....+...+ + .+++++||++|.|++++|+.+.+
T Consensus       127 ~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~  161 (166)
T cd01893         127 EMLPIMNEFREIETCVECSAKTLINVSEVFYYAQK  161 (166)
T ss_pred             HHHHHHHHHhcccEEEEeccccccCHHHHHHHHHH
Confidence            233333433 3 38999999999999999998753

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd00157 Rho Rho (Ras homology) family

Probab=99.89  E-value=1.9e-22  Score=121.02  Aligned_cols=108  Identities=28%  Similarity=0.472  Sum_probs=90.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCcc-------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEER-------   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~-------   73 (112)
                      +++|||||++++.......++.+|++++|||++++.++.... .|+..+....  .+.|+++|+||+|+.+..       
T Consensus        50 l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~  127 (171)
T cd00157          50 LGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYC--PNVPIILVGTKIDLRDDENTLKKLE  127 (171)
T ss_pred             EEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEccHHhhhchhhhhhcc
Confidence            689999999999888888899999999999999999887764 5777776643  479999999999986543       


Q ss_pred             ----cccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           74 ----VVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 ----~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                          .+..+...++...+++ +++++||++|.|++++|+++++
T Consensus       128 ~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         128 KGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             cCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence                2345566777777887 9999999999999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.89  E-value=2.6e-22  Score=122.35  Aligned_cols=109  Identities=13%  Similarity=0.171  Sum_probs=87.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||||++++..++..+++++|++++|+|+++++++.....|+..+.+.....++|+++++||+|+..  ..+.++..
T Consensus        63 ~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~  140 (184)
T smart00178       63 FTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELR  140 (184)
T ss_pred             EEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHH
Confidence            6799999999999999999999999999999999999988888887776543335789999999999863  33444444


Q ss_pred             HHHHH------------hCCcEEEeecCCCCChhHHhhhhccC
Q psy785           82 SLARA------------FACTFLETSAKAKVNSWLCVECTNDQ  112 (112)
Q Consensus        82 ~~~~~------------~~~~~~~~Sa~~~~~v~~~~~~l~~~  112 (112)
                      +....            ..+.+++|||++|.|++++++||.++
T Consensus       141 ~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      141 YALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             HHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence            33210            13469999999999999999999753

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG4252|consensus

Probab=99.89  E-value=1.5e-23  Score=124.51  Aligned_cols=108  Identities=27%  Similarity=0.405  Sum_probs=101.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||+||+.|..+...||++|.++++||+.++..||+.+..|+..+....  .++|.++|-||+|+.+..++...+.+
T Consensus        71 ~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE  148 (246)
T KOG4252|consen   71 SMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVE  148 (246)
T ss_pred             HHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHH
Confidence            4689999999999999999999999999999999999999999999998854  67999999999999998999889999


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      -+++.+...++.+|++...||..+|..|++
T Consensus       149 ~lak~l~~RlyRtSvked~NV~~vF~YLae  178 (246)
T KOG4252|consen  149 GLAKKLHKRLYRTSVKEDFNVMHVFAYLAE  178 (246)
T ss_pred             HHHHHhhhhhhhhhhhhhhhhHHHHHHHHH
Confidence            999999999999999999999999998875

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.88  E-value=1e-21  Score=121.22  Aligned_cols=99  Identities=18%  Similarity=0.307  Sum_probs=82.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc------------------CCCCCcEEEE
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK------------------DTDDVPMVLV   63 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~------------------~~~~~p~ivv   63 (112)
                      +++|||+|+++|..++..+++++|++++|||+++++|++.+..|+.++....                  ...++|+++|
T Consensus        56 l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilV  135 (202)
T cd04102          56 VELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVI  135 (202)
T ss_pred             EEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEE
Confidence            6899999999999999999999999999999999999999999999997642                  1246899999


Q ss_pred             eeCCCCCCcccccHHH----HHHHHHHhCCcEEEeecCCCC
Q psy785           64 GNKCDLEEERVVGKEQ----GASLARAFACTFLETSAKAKV  100 (112)
Q Consensus        64 ~nK~D~~~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~  100 (112)
                      |||.|+.+++.+....    ...++.+.+.+.++.+++++.
T Consensus       136 GnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~  176 (202)
T cd04102         136 GTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNGR  176 (202)
T ss_pred             EECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCcc
Confidence            9999997655444432    334677789999999998764

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd01890 LepA LepA subfamily

Probab=99.88  E-value=1.4e-21  Score=118.22  Aligned_cols=103  Identities=17%  Similarity=0.217  Sum_probs=81.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++...+..+++++|++++|+|+++..+.+....|.... .    .++|+++|+||+|+.+..  ......
T Consensus        69 ~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~----~~~~iiiv~NK~Dl~~~~--~~~~~~  141 (179)
T cd01890          69 LNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E----NNLEIIPVINKIDLPSAD--PERVKQ  141 (179)
T ss_pred             EEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H----cCCCEEEEEECCCCCcCC--HHHHHH
Confidence            679999999999999999999999999999999876666666664322 2    468999999999986422  122334


Q ss_pred             HHHHHhCC---cEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFAC---TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~---~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++.+++   +++++||++|.|++++|+++.+
T Consensus       142 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  174 (179)
T cd01890         142 QIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVE  174 (179)
T ss_pred             HHHHHhCCCcccEEEeeccCCCCHHHHHHHHHh
Confidence            55565665   4899999999999999999864

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.87  E-value=1.6e-21  Score=118.04  Aligned_cols=109  Identities=22%  Similarity=0.343  Sum_probs=90.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+||.+|+..++..|+.+++++|++|+|+|.++++.+......+..+.......++|+++++||+|+.+  ....++..
T Consensus        60 ~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~  137 (175)
T PF00025_consen   60 LTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIK  137 (175)
T ss_dssp             EEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHH
T ss_pred             EEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHH
Confidence            6899999999999999999999999999999999988888888888887765557899999999999864  23344443


Q ss_pred             HHHH------HhCCcEEEeecCCCCChhHHhhhhccC
Q psy785           82 SLAR------AFACTFLETSAKAKVNSWLCVECTNDQ  112 (112)
Q Consensus        82 ~~~~------~~~~~~~~~Sa~~~~~v~~~~~~l~~~  112 (112)
                      ....      ...+.++.|||.+|.|+.+.++||.++
T Consensus       138 ~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~  174 (175)
T PF00025_consen  138 EYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQ  174 (175)
T ss_dssp             HHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred             hhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence            3221      234579999999999999999999763

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.85  E-value=7.2e-21  Score=112.43  Aligned_cols=108  Identities=17%  Similarity=0.281  Sum_probs=85.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||||++++...+..+++++|++++|+|++++.++.....|+..+.......++|+++++||+|+.+...  .....
T Consensus        46 ~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~  123 (159)
T cd04159          46 LKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELI  123 (159)
T ss_pred             EEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHH
Confidence            6899999999999999999999999999999999998888877877776544346789999999999865332  12211


Q ss_pred             HHH-----HHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLA-----RAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~-----~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ...     ....++++++||++|.|++++++++.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         124 EQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             HHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence            111     112357899999999999999999875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.85  E-value=3e-20  Score=115.63  Aligned_cols=105  Identities=30%  Similarity=0.500  Sum_probs=89.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||+|++++..++..++.+++++++++|+++..++..+..|+..+.+..  .++|+++++||+|+.+. .... ...
T Consensus        60 i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~-~~~~-~~~  135 (215)
T PTZ00132         60 FNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDR-QVKA-RQI  135 (215)
T ss_pred             EEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccc-cCCH-HHH
Confidence            6899999999999999999999999999999999999999999999987653  56899999999998643 2222 233


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      .+++..++.++++||++|.|++++|.+++
T Consensus       136 ~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia  164 (215)
T PTZ00132        136 TFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (215)
T ss_pred             HHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            56667788999999999999999998875

>KOG3883|consensus

Probab=99.85  E-value=3.8e-20  Score=107.44  Aligned_cols=110  Identities=25%  Similarity=0.356  Sum_probs=101.4

Q ss_pred             CceEEeCCCcccc-hhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHH
Q psy785            1 MLEILDTAGTEQF-TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQ   79 (112)
Q Consensus         1 ~~~i~Dt~g~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~   79 (112)
                      ++.++||+|...+ ..+.+.|+.-+|++++||+..+++||+.+......|.++.+...+|+++++||.|+.++.++....
T Consensus        61 ~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~  140 (198)
T KOG3883|consen   61 QLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDV  140 (198)
T ss_pred             eEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHH
Confidence            4789999998887 678888999999999999999999999999988899988888899999999999998888898999


Q ss_pred             HHHHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785           80 GASLARAFACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      +..|++.-.+..++++|++...+.+.|..+.
T Consensus       141 A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~  171 (198)
T KOG3883|consen  141 AQIWAKREKVKLWEVTAMDRPSLYEPFTYLA  171 (198)
T ss_pred             HHHHHhhhheeEEEEEeccchhhhhHHHHHH
Confidence            9999999999999999999999999998764

>cd04155 Arl3 Arl3 subfamily

Probab=99.84  E-value=9.1e-20  Score=109.76  Aligned_cols=106  Identities=19%  Similarity=0.246  Sum_probs=84.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||||+.++...+..+++++|++++|+|.++..++.....|+..+.+.....++|+++++||+|+.+...  .+.  
T Consensus        60 ~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~--  135 (173)
T cd04155          60 LNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEE--  135 (173)
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHH--
Confidence            6799999999998889999999999999999999888888777777766544345799999999999864322  222  


Q ss_pred             HHHHHhC--------CcEEEeecCCCCChhHHhhhhccC
Q psy785           82 SLARAFA--------CTFLETSAKAKVNSWLCVECTNDQ  112 (112)
Q Consensus        82 ~~~~~~~--------~~~~~~Sa~~~~~v~~~~~~l~~~  112 (112)
                       +....+        ++++++||++|.|++++|+++.+|
T Consensus       136 -i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  173 (173)
T cd04155         136 -IAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCKN  173 (173)
T ss_pred             -HHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhcC
Confidence             222222        257899999999999999999865

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01898 Obg Obg subfamily

Probab=99.84  E-value=2.9e-20  Score=111.55  Aligned_cols=110  Identities=15%  Similarity=0.158  Sum_probs=82.3

Q ss_pred             CceEEeCCCccc----chhhHHhh---cccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCCCCC
Q psy785            1 MLEILDTAGTEQ----FTAMRDLY---MKNGQGFILVYSITAQ-STFNDLSDLREQILRVKDT-DDVPMVLVGNKCDLEE   71 (112)
Q Consensus         1 ~~~i~Dt~g~~~----~~~~~~~~---~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~~~   71 (112)
                      .+.+|||||+..    ...+...+   ++++|++++|+|++++ ++++.+..|...+...... .++|+++|+||+|+.+
T Consensus        49 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~  128 (170)
T cd01898          49 SFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD  128 (170)
T ss_pred             eEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence            368999999642    22223333   4569999999999998 7899888998888765432 4689999999999865


Q ss_pred             cccccHHHHHHHHHH-hCCcEEEeecCCCCChhHHhhhhcc
Q psy785           72 ERVVGKEQGASLARA-FACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        72 ~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .... ......+... .+.+++++||+++.|++++|+++.+
T Consensus       129 ~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  168 (170)
T cd01898         129 EEEL-FELLKELLKELWGKPVFPISALTGEGLDELLRKLAE  168 (170)
T ss_pred             chhh-HHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHh
Confidence            4433 3334444444 3678999999999999999999875

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG0073|consensus

Probab=99.84  E-value=4.2e-20  Score=108.11  Aligned_cols=109  Identities=18%  Similarity=0.282  Sum_probs=90.8

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHH-
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQ-   79 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-   79 (112)
                      ++++||.+||...++.|+.|++.+|++|+|+|.+++..++.....+..+.......+.|+++++||.|+..  ..+... 
T Consensus        61 ~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i  138 (185)
T KOG0073|consen   61 TLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEI  138 (185)
T ss_pred             EEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHH
Confidence            47899999999999999999999999999999999999998887777776644446799999999999973  222222 


Q ss_pred             -----HHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           80 -----GASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        80 -----~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                           ...+++...++++.|||.+|.++.+.+.|+.+
T Consensus       139 ~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~  175 (185)
T KOG0073|consen  139 SKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCD  175 (185)
T ss_pred             HHhhCHHHhccccCceEEEEeccccccHHHHHHHHHH
Confidence                 33445666889999999999999999999864

>PLN00023 GTP-binding protein; Provisional

Probab=99.84  E-value=5e-20  Score=119.57  Aligned_cols=88  Identities=19%  Similarity=0.334  Sum_probs=76.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-----------CCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-----------TDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~p~ivv~nK~D~~   70 (112)
                      ++||||+|+++|..++..++++++++|+|||+++..+++.+..|+..+.....           ..++|+++||||+|+.
T Consensus        85 LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~  164 (334)
T PLN00023         85 VELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIA  164 (334)
T ss_pred             EEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccc
Confidence            78999999999999999999999999999999999999999999999987632           1258999999999996


Q ss_pred             Ccc---c---ccHHHHHHHHHHhCC
Q psy785           71 EER---V---VGKEQGASLARAFAC   89 (112)
Q Consensus        71 ~~~---~---~~~~~~~~~~~~~~~   89 (112)
                      +.+   .   ...+.+++++++.++
T Consensus       165 ~~~~~r~~s~~~~e~a~~~A~~~g~  189 (334)
T PLN00023        165 PKEGTRGSSGNLVDAARQWVEKQGL  189 (334)
T ss_pred             ccccccccccccHHHHHHHHHHcCC
Confidence            532   2   256788999998875

>KOG0070|consensus

Probab=99.83  E-value=2e-20  Score=111.36  Aligned_cols=109  Identities=17%  Similarity=0.291  Sum_probs=90.7

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      .|++||.+||++++.+|+.|+++.+++|+|+|.++.+.+...+.-+..+..+.+..+.|+++++||.|++..  .+..+.
T Consensus        62 ~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a--ls~~ei  139 (181)
T KOG0070|consen   62 SFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA--LSAAEI  139 (181)
T ss_pred             EEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc--CCHHHH
Confidence            378999999999999999999999999999999999999988888888888776678999999999999743  233332


Q ss_pred             HHHH-----HHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           81 ASLA-----RAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        81 ~~~~-----~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+..     +...+.+..|||.+|.|+.|.++|+.+
T Consensus       140 ~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~  175 (181)
T KOG0070|consen  140 TNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSN  175 (181)
T ss_pred             HhHhhhhccCCCCcEEeeccccccccHHHHHHHHHH
Confidence            2221     223568899999999999999999864

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.83  E-value=8.8e-20  Score=119.85  Aligned_cols=110  Identities=18%  Similarity=0.138  Sum_probs=84.8

Q ss_pred             ceEEeCCCccc-------chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQ-------FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~-------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~~~~~   73 (112)
                      +.+|||||...       ....+..++++++++++|+|+++.++++.+..|..++..+... .++|+++|+||+|+.+..
T Consensus       208 ~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~  287 (335)
T PRK12299        208 FVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEE  287 (335)
T ss_pred             EEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCch
Confidence            68999999642       2223334567899999999999888899999999998876432 468999999999997544


Q ss_pred             cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .........++...+.+++++||+++.|++++++++.+
T Consensus       288 ~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~  325 (335)
T PRK12299        288 EEREKRAALELAALGGPVFLISAVTGEGLDELLRALWE  325 (335)
T ss_pred             hHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            33333344455556789999999999999999998864

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.82  E-value=1.5e-19  Score=108.24  Aligned_cols=106  Identities=13%  Similarity=0.089  Sum_probs=75.1

Q ss_pred             ceEEeCCCcccch---------hhHHhhcccCCEEEEEEeCCChhh--HHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFT---------AMRDLYMKNGQGFILVYSITAQST--FNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~---------~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      +++|||||+....         .........+|++++|+|+++..+  ++....|+..+.+..  .+.|+++++||+|+.
T Consensus        49 ~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~  126 (168)
T cd01897          49 WQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLL  126 (168)
T ss_pred             EEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccC
Confidence            6899999984211         111111234689999999988754  355567877776532  468999999999997


Q ss_pred             CcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           71 EERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +......  ..++....+++++++||++|.|++++++++.+
T Consensus       127 ~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  165 (168)
T cd01897         127 TFEDLSE--IEEEEELEGEEVLKISTLTEEGVDEVKNKACE  165 (168)
T ss_pred             chhhHHH--HHHhhhhccCceEEEEecccCCHHHHHHHHHH
Confidence            5443322  34455545679999999999999999999864

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>KOG0075|consensus

Probab=99.82  E-value=1.4e-19  Score=104.48  Aligned_cols=109  Identities=17%  Similarity=0.272  Sum_probs=87.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+||.|||++|.++|..|+++++++++++|.++++.++.-+.-+..+.....-.++|++++|||.|++.  ..+...+.
T Consensus        67 iklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~--AL~~~~li  144 (186)
T KOG0075|consen   67 IKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG--ALSKIALI  144 (186)
T ss_pred             EEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc--cccHHHHH
Confidence            6799999999999999999999999999999999998887777777777765557899999999999864  22232222


Q ss_pred             HH-----HHHhCCcEEEeecCCCCChhHHhhhhccC
Q psy785           82 SL-----ARAFACTFLETSAKAKVNSWLCVECTNDQ  112 (112)
Q Consensus        82 ~~-----~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~  112 (112)
                      .-     .....+..|.+||++..|++.+.+|++++
T Consensus       145 ~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~h  180 (186)
T KOG0075|consen  145 ERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEH  180 (186)
T ss_pred             HHhCccccccceEEEEEEEEcCCccHHHHHHHHHHH
Confidence            11     11223468999999999999999999864

>cd04171 SelB SelB subfamily

Probab=99.82  E-value=3.2e-19  Score=106.21  Aligned_cols=104  Identities=18%  Similarity=0.064  Sum_probs=73.7

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc--c
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV--V   75 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~--~   75 (112)
                      .+++|||||++++......+++++|++++|+|+++   +.+.+.+.    .+.. .  ...|+++++||+|+.+...  .
T Consensus        52 ~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~----~~~~-~--~~~~~ilv~NK~Dl~~~~~~~~  124 (164)
T cd04171          52 RLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLE----ILEL-L--GIKRGLVVLTKADLVDEDWLEL  124 (164)
T ss_pred             EEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHH----HHHH-h--CCCcEEEEEECccccCHHHHHH
Confidence            36899999999987777778899999999999986   33333221    1221 1  2249999999999965321  1


Q ss_pred             cHHHHHHHHHH---hCCcEEEeecCCCCChhHHhhhhcc
Q psy785           76 GKEQGASLARA---FACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        76 ~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ...+..+..+.   .+.+++++||++|.|++++++.+..
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         125 VEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence            12233333333   3579999999999999999998764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.80  E-value=2.7e-19  Score=104.69  Aligned_cols=98  Identities=20%  Similarity=0.150  Sum_probs=74.1

Q ss_pred             eEEeCCCcc-----cchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccH
Q psy785            3 EILDTAGTE-----QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGK   77 (112)
Q Consensus         3 ~i~Dt~g~~-----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~   77 (112)
                      .+|||||+.     .+..+.. .++++|++++|+|++++.++.. ..|...       ...|+++++||+|+.+ +....
T Consensus        38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~-------~~~p~ilv~NK~Dl~~-~~~~~  107 (142)
T TIGR02528        38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASI-------FVKPVIGLVTKIDLAE-ADVDI  107 (142)
T ss_pred             eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHh-------ccCCeEEEEEeeccCC-cccCH
Confidence            589999983     3444433 5899999999999999988754 234322       1249999999999864 33345


Q ss_pred             HHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhc
Q psy785           78 EQGASLARAFAC-TFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        78 ~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      +...++++..+. +++++||++|.|++++|+++.
T Consensus       108 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528       108 ERAKELLETAGAEPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             HHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence            566677777776 899999999999999999875

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.79  E-value=2.4e-18  Score=101.95  Aligned_cols=102  Identities=20%  Similarity=0.166  Sum_probs=76.8

Q ss_pred             ceEEeCCCcccchh------hHHhhcc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQFTA------MRDLYMK--NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~   73 (112)
                      +.+|||||++.+..      ++..++.  ++|++++|+|.+++++..   .|...+.+    .++|+++++||+|+.+..
T Consensus        45 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~  117 (158)
T cd01879          45 IEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKR  117 (158)
T ss_pred             EEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccc
Confidence            68999999987653      3555664  999999999998765432   34444433    468999999999997544


Q ss_pred             cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ... .....+...++.+++++||.+|.|+.++++++.+
T Consensus       118 ~~~-~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~  154 (158)
T cd01879         118 GIK-IDLDKLSELLGVPVVPTSARKGEGIDELKDAIAE  154 (158)
T ss_pred             cch-hhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHH
Confidence            332 2345666777899999999999999999998753

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.79  E-value=1.9e-18  Score=113.47  Aligned_cols=109  Identities=17%  Similarity=0.110  Sum_probs=82.0

Q ss_pred             ceEEeCCCcccc-------hhhHHhhcccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQF-------TAMRDLYMKNGQGFILVYSITAQ---STFNDLSDLREQILRVKDT-DDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~-------~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~~   70 (112)
                      +.+|||||+...       ...+..++++++++++|+|+++.   ++++.+..|..++..+... .++|+++|+||+|+.
T Consensus       207 ~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~  286 (329)
T TIGR02729       207 FVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLL  286 (329)
T ss_pred             EEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCC
Confidence            689999997521       12233346689999999999986   6788888888888765432 478999999999996


Q ss_pred             CcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           71 EERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +... ..+..+.+.+..+.+++++||+++.|++++++++.+
T Consensus       287 ~~~~-~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~  326 (329)
T TIGR02729       287 DEEE-LAELLKELKKALGKPVFPISALTGEGLDELLYALAE  326 (329)
T ss_pred             ChHH-HHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHH
Confidence            5432 233344455566789999999999999999998864

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.79  E-value=1.2e-17  Score=97.40  Aligned_cols=110  Identities=40%  Similarity=0.651  Sum_probs=85.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHH-H
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQ-G   80 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~   80 (112)
                      +.+||+||+..+...+...++++|++++++|.+++.+......|.............|+++++||+|+.......... .
T Consensus        47 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~  126 (157)
T cd00882          47 LQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELA  126 (157)
T ss_pred             EEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHH
Confidence            689999999988888888999999999999999999988887773333333334679999999999986543332222 2


Q ss_pred             HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           81 ASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .......+.+++++|+.++.|+.++++++.+
T Consensus       127 ~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  157 (157)
T cd00882         127 EQLAKELGVPYFETSAKTGENVEELFEELAE  157 (157)
T ss_pred             HHHHhhcCCcEEEEecCCCCChHHHHHHHhC
Confidence            3334445679999999999999999999863

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>KOG0071|consensus

Probab=99.78  E-value=2.6e-18  Score=98.53  Aligned_cols=109  Identities=14%  Similarity=0.203  Sum_probs=92.9

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      +|++||.+||++.+.+|+.||.+..++|||+|.++.+.++..+.-+..+..+.+....|+++.+||.|++...  .++++
T Consensus        62 kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~--~pqei  139 (180)
T KOG0071|consen   62 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM--KPQEI  139 (180)
T ss_pred             EEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc--CHHHH
Confidence            4789999999999999999999999999999999999899888888888888777889999999999997533  34444


Q ss_pred             HHHH-----HHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           81 ASLA-----RAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        81 ~~~~-----~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..+.     +...+-+.++||.+|.|+.+.|.|+.+
T Consensus       140 ~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsn  175 (180)
T KOG0071|consen  140 QDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSN  175 (180)
T ss_pred             HHHhccccccCCccEeeccccccchhHHHHHHHHHh
Confidence            4332     334578899999999999999999875

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.78  E-value=3.7e-18  Score=119.22  Aligned_cols=103  Identities=17%  Similarity=0.206  Sum_probs=80.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      ++||||||+++|...+..+++++|++++|+|+++..+.+....|...+.     .++|+++++||+|+....  ......
T Consensus        72 l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-----~~ipiIiViNKiDl~~~~--~~~~~~  144 (595)
T TIGR01393        72 LNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-----NDLEIIPVINKIDLPSAD--PERVKK  144 (595)
T ss_pred             EEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-----cCCCEEEEEECcCCCccC--HHHHHH
Confidence            6899999999999999999999999999999998766666666654332     358999999999986322  122234


Q ss_pred             HHHHHhCC---cEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFAC---TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~---~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++...+++   +++++||++|.|+.++|+++.+
T Consensus       145 el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~  177 (595)
T TIGR01393       145 EIEEVIGLDASEAILASAKTGIGIEEILEAIVK  177 (595)
T ss_pred             HHHHHhCCCcceEEEeeccCCCCHHHHHHHHHH
Confidence            45555565   4899999999999999998864

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.78  E-value=3.6e-18  Score=102.81  Aligned_cols=110  Identities=15%  Similarity=0.160  Sum_probs=78.9

Q ss_pred             ceEEeCCCcccc----hhh---HHhhcccCCEEEEEEeCCCh------hhHHHHHHHHHHHHhhcCC------CCCcEEE
Q psy785            2 LEILDTAGTEQF----TAM---RDLYMKNGQGFILVYSITAQ------STFNDLSDLREQILRVKDT------DDVPMVL   62 (112)
Q Consensus         2 ~~i~Dt~g~~~~----~~~---~~~~~~~~d~~i~v~d~~~~------~s~~~~~~~~~~i~~~~~~------~~~p~iv   62 (112)
                      +.+|||||....    ..+   ....++++|++++|+|+++.      .+++....|...+......      .++|+++
T Consensus        46 ~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  125 (176)
T cd01881          46 IQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIY  125 (176)
T ss_pred             EEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEE
Confidence            689999997421    112   23357789999999999987      5777777777777654321      4689999


Q ss_pred             EeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           63 VGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        63 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      |+||+|+..................+.+++++||+++.|++++++++..
T Consensus       126 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~  174 (176)
T cd01881         126 VLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYE  174 (176)
T ss_pred             EEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHh
Confidence            9999999754433222222333334668999999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.77  E-value=3.5e-18  Score=105.64  Aligned_cols=103  Identities=20%  Similarity=0.167  Sum_probs=72.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc--
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQ----STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV--   75 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~--   75 (112)
                      +.||||||++++...+...+.++|++++|+|++++    .+.+.+..    +.. .  ...|+++++||+|+.+....  
T Consensus        85 i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~----~~~-~--~~~~iiivvNK~Dl~~~~~~~~  157 (203)
T cd01888          85 VSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAA----LEI-M--GLKHIIIVQNKIDLVKEEQALE  157 (203)
T ss_pred             EEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHH----HHH-c--CCCcEEEEEEchhccCHHHHHH
Confidence            68999999999877777778899999999999863    22332222    221 1  22478999999998642221  


Q ss_pred             cHHHHHHHHHHh---CCcEEEeecCCCCChhHHhhhhcc
Q psy785           76 GKEQGASLARAF---ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        76 ~~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..+...++....   +++++++||++|.|++++++.+.+
T Consensus       158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~  196 (203)
T cd01888         158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVK  196 (203)
T ss_pred             HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHH
Confidence            112233333332   568999999999999999998864

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.77  E-value=4.9e-18  Score=104.24  Aligned_cols=99  Identities=19%  Similarity=0.164  Sum_probs=70.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc-ccHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV-VGKEQG   80 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~   80 (112)
                      +++|||||+++|...+..+++++|++++|+|+++.. ......|+..+..    .++|+++++||+|+.+... ....+.
T Consensus        67 ~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~  141 (194)
T cd01891          67 INIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEV  141 (194)
T ss_pred             EEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHH
Confidence            689999999999999999999999999999998732 2222334444332    4689999999999864322 112333


Q ss_pred             HHHHHH-------hCCcEEEeecCCCCChhHH
Q psy785           81 ASLARA-------FACTFLETSAKAKVNSWLC  105 (112)
Q Consensus        81 ~~~~~~-------~~~~~~~~Sa~~~~~v~~~  105 (112)
                      .++...       .+++++++||++|.|+.+.
T Consensus       142 ~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~  173 (194)
T cd01891         142 FDLFIELGATEEQLDFPVLYASAKNGWASLNL  173 (194)
T ss_pred             HHHHHHhCCccccCccCEEEeehhcccccccc
Confidence            343322       3678999999999877544

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.76  E-value=1.3e-17  Score=99.70  Aligned_cols=105  Identities=22%  Similarity=0.135  Sum_probs=73.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc-HHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG-KEQG   80 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~   80 (112)
                      +.+|||||++.|..++...++.+|++++|+|+++....+.... +..+..    .++|+++|+||+|+.+..... ....
T Consensus        52 ~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~-~~~~~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~  126 (168)
T cd01887          52 ITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEA-IKLAKA----ANVPFIVALNKIDKPNANPERVKNEL  126 (168)
T ss_pred             EEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHH-HHHHHH----cCCCEEEEEEceecccccHHHHHHHH
Confidence            6899999999999888889999999999999987432222111 122222    468999999999986422110 1111


Q ss_pred             HHHHH------HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           81 ASLAR------AFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        81 ~~~~~------~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..+..      ...++++++||++|.|+.++++++.+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  163 (168)
T cd01887         127 SELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILL  163 (168)
T ss_pred             HHhhccccccccCcCcEEEeecccCCCHHHHHHHHHH
Confidence            11111      11358999999999999999999864

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.76  E-value=5.1e-18  Score=107.54  Aligned_cols=96  Identities=21%  Similarity=0.196  Sum_probs=78.9

Q ss_pred             ccchhhHHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCC
Q psy785           11 EQFTAMRDLYMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFAC   89 (112)
Q Consensus        11 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~   89 (112)
                      ++|+.+.+.+++++|++++|+|++++. +++.+..|+..+..    .++|+++|+||+|+.+.+....+....+ ...++
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~   98 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGY   98 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCC
Confidence            678889999999999999999999887 89999999876643    5699999999999975444333333333 35788


Q ss_pred             cEEEeecCCCCChhHHhhhhcc
Q psy785           90 TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        90 ~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +++++||++|.|++++|+.+.+
T Consensus        99 ~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        99 QVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             eEEEEecCCchhHHHHHhhhcC
Confidence            9999999999999999998764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>cd01878 HflX HflX subfamily

Probab=99.76  E-value=1e-17  Score=103.51  Aligned_cols=103  Identities=18%  Similarity=0.179  Sum_probs=76.2

Q ss_pred             ceEEeCCCccc---------chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785            2 LEILDTAGTEQ---------FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE   72 (112)
Q Consensus         2 ~~i~Dt~g~~~---------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~   72 (112)
                      +.+|||||..+         +...+ ..+.++|++++|+|.+++.+......|...+... ...++|+++|+||+|+.+.
T Consensus        91 ~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~-~~~~~~viiV~NK~Dl~~~  168 (204)
T cd01878          91 VLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKEL-GAEDIPMILVLNKIDLLDD  168 (204)
T ss_pred             EEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHc-CcCCCCEEEEEEccccCCh
Confidence            67999999732         11111 2367899999999999988887776776665543 2356899999999998654


Q ss_pred             ccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           73 RVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ....     ......+.+++++||++|.|+.++++++.+
T Consensus       169 ~~~~-----~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~  202 (204)
T cd01878         169 EELE-----ERLEAGRPDAVFISAKTGEGLDELLEAIEE  202 (204)
T ss_pred             HHHH-----HHhhcCCCceEEEEcCCCCCHHHHHHHHHh
Confidence            3221     333445668999999999999999998864

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>KOG0076|consensus

Probab=99.75  E-value=2.7e-18  Score=101.47  Aligned_cols=108  Identities=19%  Similarity=0.247  Sum_probs=88.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.|||.+||+..+++|..||..++++++++|+++++-++....-++.+..+-...+.|+++.+||.|+.+.-.  ..++.
T Consensus        71 l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~--~~El~  148 (197)
T KOG0076|consen   71 LSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME--AAELD  148 (197)
T ss_pred             eEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh--HHHHH
Confidence            6799999999999999999999999999999999999988887777777766668999999999999875322  23322


Q ss_pred             HH---HH---HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SL---AR---AFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~---~~---~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..   +.   +...++.++||.+|.||++..+|++.
T Consensus       149 ~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~  184 (197)
T KOG0076|consen  149 GVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVK  184 (197)
T ss_pred             HHhhhhhhcCCccCccccchhhhcccHHHHHHHHHH
Confidence            22   22   22468999999999999999999863

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.75  E-value=1.2e-17  Score=99.67  Aligned_cols=97  Identities=13%  Similarity=0.059  Sum_probs=71.6

Q ss_pred             EEeCCCcc-----cchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHH
Q psy785            4 ILDTAGTE-----QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKE   78 (112)
Q Consensus         4 i~Dt~g~~-----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~   78 (112)
                      +|||||+.     .+..+. ..++++|++++|+|.++..++.  ..|+..+     ..+.|+++++||+|+..   ...+
T Consensus        41 ~iDtpG~~~~~~~~~~~~~-~~~~~ad~il~v~d~~~~~s~~--~~~~~~~-----~~~~~ii~v~nK~Dl~~---~~~~  109 (158)
T PRK15467         41 DIDTPGEYFSHPRWYHALI-TTLQDVDMLIYVHGANDPESRL--PAGLLDI-----GVSKRQIAVISKTDMPD---ADVA  109 (158)
T ss_pred             cccCCccccCCHHHHHHHH-HHHhcCCEEEEEEeCCCccccc--CHHHHhc-----cCCCCeEEEEEccccCc---ccHH
Confidence            69999973     222222 3478999999999999877652  3344333     13579999999999853   2345


Q ss_pred             HHHHHHHHhCC--cEEEeecCCCCChhHHhhhhcc
Q psy785           79 QGASLARAFAC--TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        79 ~~~~~~~~~~~--~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ...+++.+.++  +++++||++|.|++++|+.+.+
T Consensus       110 ~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~  144 (158)
T PRK15467        110 ATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLAS  144 (158)
T ss_pred             HHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHH
Confidence            56667777775  8999999999999999998764

>KOG4423|consensus

Probab=99.75  E-value=7.5e-19  Score=104.98  Aligned_cols=110  Identities=28%  Similarity=0.393  Sum_probs=93.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCCcEEEEeeCCCCCCcccc-cH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD---TDDVPMVLVGNKCDLEEERVV-GK   77 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~D~~~~~~~-~~   77 (112)
                      +++||.+||++|..+.+.+|+.+.+..+|||++..-+|+....|..++.....   ..+.|+++.+||+|....... ..
T Consensus        77 lqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~  156 (229)
T KOG4423|consen   77 LQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEAT  156 (229)
T ss_pred             HHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhH
Confidence            57999999999999999999999999999999999999999999988865432   246899999999998643222 23


Q ss_pred             HHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           78 EQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        78 ~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ....++++++|+ .++++|+|.+.++.|.-+.+++
T Consensus       157 ~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe  191 (229)
T KOG4423|consen  157 RQFDNFKKENGFEGWTETSAKENKNIPEAQRELVE  191 (229)
T ss_pred             HHHHHHHhccCccceeeeccccccChhHHHHHHHH
Confidence            567788899998 8999999999999999888765

>PRK04213 GTP-binding protein; Provisional

Probab=99.75  E-value=3.1e-18  Score=105.51  Aligned_cols=104  Identities=16%  Similarity=0.108  Sum_probs=68.6

Q ss_pred             ceEEeCCC-----------cccchhhHHhhcc----cCCEEEEEEeCCChhhHHHHHHHH--------HHHHhhcCCCCC
Q psy785            2 LEILDTAG-----------TEQFTAMRDLYMK----NGQGFILVYSITAQSTFNDLSDLR--------EQILRVKDTDDV   58 (112)
Q Consensus         2 ~~i~Dt~g-----------~~~~~~~~~~~~~----~~d~~i~v~d~~~~~s~~~~~~~~--------~~i~~~~~~~~~   58 (112)
                      +.+|||||           ++++...+..++.    .++++++|+|.+....+.  ..|.        ..+.......++
T Consensus        54 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~  131 (201)
T PRK04213         54 FILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEII--ERWEGRGEIPIDVEMFDFLRELGI  131 (201)
T ss_pred             eEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccc--cccccCCCcHHHHHHHHHHHHcCC
Confidence            68999999           5677776666654    457888888875432110  1110        011111112468


Q ss_pred             cEEEEeeCCCCCCcccccHHHHHHHHHHhCC---------cEEEeecCCCCChhHHhhhhcc
Q psy785           59 PMVLVGNKCDLEEERVVGKEQGASLARAFAC---------TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        59 p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---------~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      |+++|+||+|+.+..   .+...++++.+++         +++++||++| |++++++++.+
T Consensus       132 p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~  189 (201)
T PRK04213        132 PPIVAVNKMDKIKNR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRK  189 (201)
T ss_pred             CeEEEEECccccCcH---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHH
Confidence            999999999986433   2344555555554         5899999999 99999999864

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.74  E-value=5.3e-17  Score=101.07  Aligned_cols=108  Identities=33%  Similarity=0.385  Sum_probs=84.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA-QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV------   74 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~------   74 (112)
                      +.+|||+|+++|..+++.++.+++++++++|.+. ..+.+....|...+..... ...|+++++||+|+.....      
T Consensus        56 ~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~  134 (219)
T COG1100          56 LQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAP-DDVPILLVGNKIDLFDEQSSSEEIL  134 (219)
T ss_pred             EEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC-CCceEEEEecccccccchhHHHHHH
Confidence            7899999999999999999999999999999999 5566667889988877643 4689999999999976532      


Q ss_pred             ------ccHHHHHHHHHHh---CCcEEEeecC--CCCChhHHhhhhc
Q psy785           75 ------VGKEQGASLARAF---ACTFLETSAK--AKVNSWLCVECTN  110 (112)
Q Consensus        75 ------~~~~~~~~~~~~~---~~~~~~~Sa~--~~~~v~~~~~~l~  110 (112)
                            .........+...   ...++++|++  .+.++.++|..+.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~  181 (219)
T COG1100         135 NQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELL  181 (219)
T ss_pred             hhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHH
Confidence                  2222222222222   3358999999  9999999998764

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.73  E-value=7.1e-17  Score=94.92  Aligned_cols=107  Identities=24%  Similarity=0.407  Sum_probs=82.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCCh-hhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQ-STFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQ   79 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~   79 (112)
                      +.+|||||+.++..++..+.+++++++.++|.... .++.... .|...+...... +.|+++++||+|+.... .....
T Consensus        52 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~-~~~~~  129 (161)
T TIGR00231        52 FNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAK-LKTHV  129 (161)
T ss_pred             EEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcch-hhHHH
Confidence            67899999999999999999999999999999877 6666554 676666665433 78999999999996533 22222


Q ss_pred             HHHHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785           80 GASLARAFACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      ...+......+++++||++|.|+.++|+++.
T Consensus       130 ~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       130 AFLFAKLNGEPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             HHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence            2233333356899999999999999998863

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.73  E-value=6.1e-17  Score=113.32  Aligned_cols=103  Identities=18%  Similarity=0.231  Sum_probs=78.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      ++||||||+.+|...+..+++.+|++++|+|+++....+....|.... .    .++|+++|+||+|+.+...  .....
T Consensus        76 lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~----~~lpiIvViNKiDl~~a~~--~~v~~  148 (600)
T PRK05433         76 LNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NDLEIIPVLNKIDLPAADP--ERVKQ  148 (600)
T ss_pred             EEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEEEECCCCCcccH--HHHHH
Confidence            689999999999988999999999999999998865555555554332 1    4689999999999864221  22233


Q ss_pred             HHHHHhCC---cEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFAC---TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~---~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++...+++   +++++||++|.|+.++++++.+
T Consensus       149 ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~  181 (600)
T PRK05433        149 EIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVE  181 (600)
T ss_pred             HHHHHhCCCcceEEEEecCCCCCHHHHHHHHHH
Confidence            44444555   3899999999999999998864

>KOG0072|consensus

Probab=99.73  E-value=2.7e-17  Score=94.77  Aligned_cols=111  Identities=12%  Similarity=0.110  Sum_probs=83.9

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHH--
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKE--   78 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~--   78 (112)
                      ++++||.+|+-.....|+.||.+.|++|+|+|.++.+.+.-....+-.+.+..+..+..+++++||+|....-..++.  
T Consensus        63 k~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~  142 (182)
T KOG0072|consen   63 KFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLK  142 (182)
T ss_pred             cceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHH
Confidence            479999999999999999999999999999999998866555455555555555566788999999998642211111  


Q ss_pred             -HHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           79 -QGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        79 -~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                       ......+..-+.++++||.+|.|+++..+||.+
T Consensus       143 ~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~  176 (182)
T KOG0072|consen  143 MLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQR  176 (182)
T ss_pred             HhChHHHhhheeEEEeeccccccCCcHHHHHHHH
Confidence             111122333479999999999999999999864

>cd01894 EngA1 EngA1 subfamily

Probab=99.73  E-value=8e-17  Score=95.17  Aligned_cols=101  Identities=18%  Similarity=0.150  Sum_probs=71.2

Q ss_pred             ceEEeCCCcccchh--------hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQFTA--------MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~--------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~   73 (112)
                      +.+|||||...+..        .+...++++|++++++|..+..+.... .....+.+    .+.|+++++||+|+.+..
T Consensus        47 ~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~----~~~piiiv~nK~D~~~~~  121 (157)
T cd01894          47 FILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE-EIAKYLRK----SKKPVILVVNKVDNIKEE  121 (157)
T ss_pred             EEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH-HHHHHHHh----cCCCEEEEEECcccCChH
Confidence            67999999887543        334567899999999999765433322 11222222    358999999999986533


Q ss_pred             cccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhccC
Q psy785           74 VVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTNDQ  112 (112)
Q Consensus        74 ~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~~  112 (112)
                      ..     .......+. +++++||++|.|++++++++.++
T Consensus       122 ~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (157)
T cd01894         122 DE-----AAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL  156 (157)
T ss_pred             HH-----HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence            21     222334566 88999999999999999998753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.72  E-value=2.1e-16  Score=106.55  Aligned_cols=106  Identities=13%  Similarity=0.160  Sum_probs=80.1

Q ss_pred             ceEEeCCCccc----chhhHH---hhcccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQ----FTAMRD---LYMKNGQGFILVYSITAQ---STFNDLSDLREQILRVKDT-DDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~----~~~~~~---~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~~   70 (112)
                      +.+|||||...    ...+..   .++++++++++|+|+++.   ++++.+..|..++..+... .++|.++|+||+|+.
T Consensus       208 ~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~  287 (424)
T PRK12297        208 FVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP  287 (424)
T ss_pred             EEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence            68999999642    112333   345679999999999865   6778888888888776432 478999999999984


Q ss_pred             CcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           71 EERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..    .+....+.+.++.+++++||+++.|++++++++.+
T Consensus       288 ~~----~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~  324 (424)
T PRK12297        288 EA----EENLEEFKEKLGPKVFPISALTGQGLDELLYAVAE  324 (424)
T ss_pred             CC----HHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHH
Confidence            21    33445566666788999999999999999998753

>TIGR00436 era GTP-binding protein Era

Probab=99.72  E-value=1.4e-16  Score=102.30  Aligned_cols=103  Identities=14%  Similarity=-0.013  Sum_probs=72.9

Q ss_pred             ceEEeCCCcccc-hh-------hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQF-TA-------MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~-~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~   73 (112)
                      +.||||||.... ..       ....+++++|++++|+|+++..+.+  ..++..+..    .+.|+++|+||+|+.+..
T Consensus        50 ii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~----~~~p~ilV~NK~Dl~~~~  123 (270)
T TIGR00436        50 IIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN----LKRPVVLTRNKLDNKFKD  123 (270)
T ss_pred             EEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh----cCCCEEEEEECeeCCCHH
Confidence            679999997542 11       2344678999999999998876654  334444433    468999999999986422


Q ss_pred             cccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           74 VVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 ~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      . .......++...++ +++++||++|.|++++++.+.+
T Consensus       124 ~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~  161 (270)
T TIGR00436       124 K-LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEV  161 (270)
T ss_pred             H-HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHH
Confidence            2 12333444444455 8999999999999999998764

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01889 SelB_euk SelB subfamily

Probab=99.72  E-value=1.9e-16  Score=97.05  Aligned_cols=107  Identities=17%  Similarity=0.012  Sum_probs=69.8

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc--cHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV--GKE   78 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~   78 (112)
                      ++.+|||||+..+..........+|++++|+|.++.........+.  +...   .+.|+++++||+|+......  ..+
T Consensus        69 ~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~  143 (192)
T cd01889          69 QITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIE  143 (192)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHH
Confidence            3689999999765333333456789999999998754333322222  1121   35799999999998642221  122


Q ss_pred             HHHHHH-HH------hCCcEEEeecCCCCChhHHhhhhccC
Q psy785           79 QGASLA-RA------FACTFLETSAKAKVNSWLCVECTNDQ  112 (112)
Q Consensus        79 ~~~~~~-~~------~~~~~~~~Sa~~~~~v~~~~~~l~~~  112 (112)
                      +..+.. ..      .+++++++||++|.|++++++.+.+|
T Consensus       144 ~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~  184 (192)
T cd01889         144 KMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNL  184 (192)
T ss_pred             HHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhc
Confidence            222211 11      25689999999999999999988764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.71  E-value=9.5e-17  Score=109.98  Aligned_cols=105  Identities=18%  Similarity=0.158  Sum_probs=72.1

Q ss_pred             ceEEeCCCcc----------cchhhH-HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTE----------QFTAMR-DLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~----------~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      +.+|||||..          .|..+. ..+++++|++++|+|+++..+.+.+. ++..+..    .++|+++|+||+|+.
T Consensus       261 ~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~  335 (472)
T PRK03003        261 WRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLV  335 (472)
T ss_pred             EEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccC
Confidence            5799999953          333332 23578999999999999988777663 4444433    568999999999996


Q ss_pred             Ccccc--cHHHHHH-HHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           71 EERVV--GKEQGAS-LARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        71 ~~~~~--~~~~~~~-~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +....  ...+... +......+++++||++|.|++++|+.+.+
T Consensus       336 ~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~  379 (472)
T PRK03003        336 DEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALET  379 (472)
T ss_pred             ChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            42211  0111111 11112358999999999999999998753

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.70  E-value=2.1e-16  Score=110.31  Aligned_cols=101  Identities=21%  Similarity=0.217  Sum_probs=72.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.||||||+++|..++...+..+|++++|+|+++...-+....+ ....    ..++|+++++||+|+.+.   ..+...
T Consensus       137 i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i-~~~~----~~~vPiIVviNKiDl~~~---~~e~v~  208 (587)
T TIGR00487       137 ITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAI-SHAK----AANVPIIVAINKIDKPEA---NPDRVK  208 (587)
T ss_pred             EEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHH-HHHH----HcCCCEEEEEECcccccC---CHHHHH
Confidence            68999999999999998889999999999998763222222122 1121    246899999999998532   122222


Q ss_pred             HHHHH-------hC--CcEEEeecCCCCChhHHhhhhc
Q psy785           82 SLARA-------FA--CTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        82 ~~~~~-------~~--~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      .....       ++  .+++++||++|.|+.++++++.
T Consensus       209 ~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~  246 (587)
T TIGR00487       209 QELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMIL  246 (587)
T ss_pred             HHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhh
Confidence            22222       22  4799999999999999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.70  E-value=2.5e-16  Score=95.65  Aligned_cols=105  Identities=17%  Similarity=0.135  Sum_probs=76.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc--cHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV--GKEQ   79 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~   79 (112)
                      +.+|||||+.++...+..+++++|++++|+|.+.+.+.... .++..+..    .+.|+++++||+|+......  ....
T Consensus        64 ~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~  138 (189)
T cd00881          64 VNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTR-EHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLRE  138 (189)
T ss_pred             EEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHH
Confidence            68999999999988888999999999999999876544322 33333332    56899999999998752221  1122


Q ss_pred             HHHHHHH--------------hCCcEEEeecCCCCChhHHhhhhcc
Q psy785           80 GASLARA--------------FACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        80 ~~~~~~~--------------~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..+..+.              ...+++++||++|.|++++++++.+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~  184 (189)
T cd00881         139 IKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVE  184 (189)
T ss_pred             HHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHh
Confidence            2232222              2468999999999999999998764

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>KOG0096|consensus

Probab=99.70  E-value=1.2e-17  Score=100.00  Aligned_cols=106  Identities=29%  Similarity=0.481  Sum_probs=90.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +..|||+|++.+..+...+|=+..+.+++||++..-.+.++.+|-.++.+.+  .++|++++|||.|...+..  ..+..
T Consensus        61 f~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~~--k~k~v  136 (216)
T KOG0096|consen   61 FNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARKV--KAKPV  136 (216)
T ss_pred             EEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceecccccc--ccccc
Confidence            6789999999999999999999999999999999999999999999998876  5699999999999865431  22333


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+.+..++.++++||+++.|.+..|.++..
T Consensus       137 ~~~rkknl~y~~iSaksn~NfekPFl~Lar  166 (216)
T KOG0096|consen  137 SFHRKKNLQYYEISAKSNYNFERPFLWLAR  166 (216)
T ss_pred             eeeecccceeEEeecccccccccchHHHhh
Confidence            455566889999999999999999998863

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.70  E-value=2.4e-16  Score=104.38  Aligned_cols=102  Identities=21%  Similarity=0.206  Sum_probs=73.1

Q ss_pred             ceEEeCCCcc---------cchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785            2 LEILDTAGTE---------QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE   72 (112)
Q Consensus         2 ~~i~Dt~g~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~   72 (112)
                      +.+|||||..         .|...+ ..+.++|++++|+|++++.+.+.+..|...+... ...++|+++|+||+|+.+.
T Consensus       239 i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~~~~piIlV~NK~Dl~~~  316 (351)
T TIGR03156       239 VLLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GAEDIPQLLVYNKIDLLDE  316 (351)
T ss_pred             EEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-ccCCCCEEEEEEeecCCCh
Confidence            6899999972         232222 2478999999999999988877776665555443 2346899999999998642


Q ss_pred             ccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           73 RVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ...     ... .....+++++||++|.|++++++++.+
T Consensus       317 ~~v-----~~~-~~~~~~~i~iSAktg~GI~eL~~~I~~  349 (351)
T TIGR03156       317 PRI-----ERL-EEGYPEAVFVSAKTGEGLDLLLEAIAE  349 (351)
T ss_pred             HhH-----HHH-HhCCCCEEEEEccCCCCHHHHHHHHHh
Confidence            221     111 112346899999999999999998864

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK15494 era GTPase Era; Provisional

Probab=99.69  E-value=3.8e-16  Score=103.10  Aligned_cols=102  Identities=14%  Similarity=0.142  Sum_probs=70.1

Q ss_pred             CceEEeCCCccc-chhhH-------HhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785            1 MLEILDTAGTEQ-FTAMR-------DLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEE   71 (112)
Q Consensus         1 ~~~i~Dt~g~~~-~~~~~-------~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~   71 (112)
                      ++.||||||+.+ +..+.       ...++++|++++|+|..+  ++.... .|+..+..    .+.|+++|+||+|+.+
T Consensus       101 qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~----~~~p~IlViNKiDl~~  174 (339)
T PRK15494        101 QVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRS----LNIVPIFLLNKIDIES  174 (339)
T ss_pred             EEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh----cCCCEEEEEEhhcCcc
Confidence            368999999853 22222       124779999999999765  333332 34444443    3468889999999864


Q ss_pred             cccccHHHHHHHHHHhC--CcEEEeecCCCCChhHHhhhhcc
Q psy785           72 ERVVGKEQGASLARAFA--CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        72 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .   ......+.+...+  .+++++||++|.|++++++++.+
T Consensus       175 ~---~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~  213 (339)
T PRK15494        175 K---YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITS  213 (339)
T ss_pred             c---cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHH
Confidence            2   2334445554443  48999999999999999999864

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.69  E-value=3e-16  Score=106.53  Aligned_cols=97  Identities=23%  Similarity=0.219  Sum_probs=73.1

Q ss_pred             ceEEeCCCcccchhh--------HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQFTAM--------RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~--------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~   73 (112)
                      +++|||||+.++...        ...+++++|++++|+|.+++.+.+..  |+..+..    .+.|+++|+||+|+.+. 
T Consensus       253 v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-  325 (442)
T TIGR00450       253 IKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-  325 (442)
T ss_pred             EEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-
Confidence            579999998765432        23578899999999999988877664  6655533    46899999999998642 


Q ss_pred             cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                           ....+++..+.+++++||++ .||+++|+.+.+
T Consensus       326 -----~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~  357 (442)
T TIGR00450       326 -----SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQ  357 (442)
T ss_pred             -----chhhhhhhcCCceEEEEEec-CCHHHHHHHHHH
Confidence                 11344556678899999998 688888887653

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.69  E-value=2.3e-16  Score=110.35  Aligned_cols=102  Identities=20%  Similarity=0.194  Sum_probs=75.6

Q ss_pred             ceEEeCCCcccchhh------HHhhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQFTAM------RDLYM--KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~------~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~   73 (112)
                      +++|||||++++...      .+.++  +++|++++|+|.++.+..   ..+..++.+    .++|+++++||+|+.+.+
T Consensus        43 i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler~---l~l~~ql~~----~~~PiIIVlNK~Dl~~~~  115 (591)
T TIGR00437        43 IEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLERN---LYLTLQLLE----LGIPMILALNLVDEAEKK  115 (591)
T ss_pred             EEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchhh---HHHHHHHHh----cCCCEEEEEehhHHHHhC
Confidence            689999999877542      34443  479999999999874321   123333332    468999999999986544


Q ss_pred             cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ... .+.+.+.+..+++++++||++|.|++++++++.+
T Consensus       116 ~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~  152 (591)
T TIGR00437       116 GIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIRK  152 (591)
T ss_pred             CCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHH
Confidence            443 3456777888999999999999999999998753

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.69  E-value=9.9e-16  Score=91.47  Aligned_cols=103  Identities=17%  Similarity=0.274  Sum_probs=79.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      ++++|||||+||..+|+.+.+++++.++++|.+.+..+ .....+..+.. .  ..+|+++++||+|+.+..  ++++.+
T Consensus        70 v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~-~--~~ip~vVa~NK~DL~~a~--ppe~i~  143 (187)
T COG2229          70 VHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTS-R--NPIPVVVAINKQDLFDAL--PPEKIR  143 (187)
T ss_pred             EEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhh-c--cCCCEEEEeeccccCCCC--CHHHHH
Confidence            68999999999999999999999999999999998877 22233332222 1  239999999999997533  345555


Q ss_pred             HHHHH--hCCcEEEeecCCCCChhHHhhhhc
Q psy785           82 SLARA--FACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        82 ~~~~~--~~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      +....  ...+.++++|.++.+..+.+..+.
T Consensus       144 e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll  174 (187)
T COG2229         144 EALKLELLSVPVIEIDATEGEGARDQLDVLL  174 (187)
T ss_pred             HHHHhccCCCceeeeecccchhHHHHHHHHH
Confidence            54443  378999999999999988887664

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.69  E-value=4.9e-16  Score=105.35  Aligned_cols=103  Identities=22%  Similarity=0.211  Sum_probs=70.5

Q ss_pred             ceEEeCCCcccchhh-----------HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFTAM-----------RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~-----------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      +.+|||||+.++...           ...+++++|++++|+|+++..+.+... +...+.+    .++|+++|+||+|+.
T Consensus       222 ~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~  296 (429)
T TIGR03594       222 YLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLV  296 (429)
T ss_pred             EEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccC
Confidence            679999997543321           123678999999999999876665542 3333332    468999999999997


Q ss_pred             CcccccHHHHHH-HHHHh----CCcEEEeecCCCCChhHHhhhhc
Q psy785           71 EERVVGKEQGAS-LARAF----ACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        71 ~~~~~~~~~~~~-~~~~~----~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      ++.. ..+.... ....+    ..+++++||++|.|+.++|+++.
T Consensus       297 ~~~~-~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~  340 (429)
T TIGR03594       297 KDEK-TREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAID  340 (429)
T ss_pred             CCHH-HHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHH
Confidence            3211 1122222 22222    36899999999999999999875

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.68  E-value=5.3e-16  Score=106.05  Aligned_cols=109  Identities=15%  Similarity=0.092  Sum_probs=76.3

Q ss_pred             ceEEeCCCcccc----h---hhHHhhcccCCEEEEEEeCCCh----hhHHHHHHHHHHHHhhcC----------CCCCcE
Q psy785            2 LEILDTAGTEQF----T---AMRDLYMKNGQGFILVYSITAQ----STFNDLSDLREQILRVKD----------TDDVPM   60 (112)
Q Consensus         2 ~~i~Dt~g~~~~----~---~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~~----------~~~~p~   60 (112)
                      |.+|||||....    .   .....++++++++++|+|+++.    ++++.+..|..++..+..          ...+|.
T Consensus       208 f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~  287 (500)
T PRK12296        208 FTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPR  287 (500)
T ss_pred             EEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCE
Confidence            689999996321    1   1122357889999999999753    456666666666655542          246899


Q ss_pred             EEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        61 ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++|+||+|+.+.... .+.........+++++++||+++.|+++++.++.+
T Consensus       288 IVVlNKiDL~da~el-~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~e  337 (500)
T PRK12296        288 LVVLNKIDVPDAREL-AEFVRPELEARGWPVFEVSAASREGLRELSFALAE  337 (500)
T ss_pred             EEEEECccchhhHHH-HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            999999999643332 12222333445789999999999999999998764

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.68  E-value=2.4e-16  Score=107.37  Aligned_cols=95  Identities=24%  Similarity=0.213  Sum_probs=71.9

Q ss_pred             ceEEeCCCcccchhh--------HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQFTAM--------RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~--------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~   73 (112)
                      +.+|||||++++...        ...+++++|++++|+|.+++.+.+....|..       ..+.|+++|+||+|+.+..
T Consensus       265 i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~~~  337 (449)
T PRK05291        265 LRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADLTGEI  337 (449)
T ss_pred             EEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhccccc
Confidence            689999998765432        2336789999999999998877765544432       2468999999999996433


Q ss_pred             cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ...        ...+.+++++||++|.|++++++++.+
T Consensus       338 ~~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~  367 (449)
T PRK05291        338 DLE--------EENGKPVIRISAKTGEGIDELREAIKE  367 (449)
T ss_pred             hhh--------hccCCceEEEEeeCCCCHHHHHHHHHH
Confidence            221        234568999999999999999998753

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.68  E-value=5.7e-16  Score=106.19  Aligned_cols=100  Identities=19%  Similarity=0.226  Sum_probs=70.2

Q ss_pred             ceEEeCCCccc--------chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQ--------FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~   73 (112)
                      +.+|||||++.        +...+..+++++|++++|+|+++..+... ..|...+..    .++|+++|+||+|+....
T Consensus        88 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~----~~~piilV~NK~Dl~~~~  162 (472)
T PRK03003         88 FTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR----SGKPVILAANKVDDERGE  162 (472)
T ss_pred             EEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECccCCccc
Confidence            67999999763        33445667899999999999998755432 233333332    468999999999985321


Q ss_pred             cccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           74 VVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 ~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                         ......+  ..++ ..+++||++|.|++++|+++++
T Consensus       163 ---~~~~~~~--~~g~~~~~~iSA~~g~gi~eL~~~i~~  196 (472)
T PRK03003        163 ---ADAAALW--SLGLGEPHPVSALHGRGVGDLLDAVLA  196 (472)
T ss_pred             ---hhhHHHH--hcCCCCeEEEEcCCCCCcHHHHHHHHh
Confidence               1111122  2344 5679999999999999998864

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.67  E-value=8.6e-16  Score=109.07  Aligned_cols=101  Identities=21%  Similarity=0.232  Sum_probs=73.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.||||||++.|..++...+..+|++++|+|+++....+....| ..+.    ..++|+++++||+|+.+..   .....
T Consensus       297 ItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I-~~~k----~~~iPiIVViNKiDl~~~~---~e~v~  368 (742)
T CHL00189        297 IVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAI-NYIQ----AANVPIIVAINKIDKANAN---TERIK  368 (742)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHH-HHHH----hcCceEEEEEECCCccccC---HHHHH
Confidence            68999999999999999999999999999998774222222222 1122    2568999999999986422   12211


Q ss_pred             HH-------HHHhC--CcEEEeecCCCCChhHHhhhhc
Q psy785           82 SL-------ARAFA--CTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        82 ~~-------~~~~~--~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      +.       ...++  ++++++||++|.|+.++++.+.
T Consensus       369 ~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~  406 (742)
T CHL00189        369 QQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETIL  406 (742)
T ss_pred             HHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhh
Confidence            11       22233  6899999999999999999875

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.66  E-value=1.8e-15  Score=92.54  Aligned_cols=106  Identities=19%  Similarity=0.166  Sum_probs=73.7

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc-ccHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV-VGKEQ   79 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~   79 (112)
                      .+.++||||+.+|.......++.+|++++|+|+.+...... ...+..+..    .++|++++.||+|+...+. ...++
T Consensus        71 ~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~----~~~p~ivvlNK~D~~~~~~~~~~~~  145 (188)
T PF00009_consen   71 KITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE----LGIPIIVVLNKMDLIEKELEEIIEE  145 (188)
T ss_dssp             EEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH----TT-SEEEEEETCTSSHHHHHHHHHH
T ss_pred             ceeecccccccceeecccceecccccceeeeeccccccccc-ccccccccc----cccceEEeeeeccchhhhHHHHHHH
Confidence            36899999999998877778999999999999986543332 222333333    5689999999999872111 00111


Q ss_pred             HH-HHHHHhC------CcEEEeecCCCCChhHHhhhhcc
Q psy785           80 GA-SLARAFA------CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        80 ~~-~~~~~~~------~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .. .+.+..+      ++++++||++|.|+.++++.+.+
T Consensus       146 ~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~  184 (188)
T PF00009_consen  146 IKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVE  184 (188)
T ss_dssp             HHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred             HHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHH
Confidence            11 2333332      47999999999999999998764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.66  E-value=1e-15  Score=90.40  Aligned_cols=96  Identities=21%  Similarity=0.185  Sum_probs=71.6

Q ss_pred             ceEEeCCCcccchh--------hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQFTA--------MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~--------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~   73 (112)
                      +.+|||||...+..        .....+.++|++++|+|++++.+......+..       ..+.|+++++||+|+.+..
T Consensus        51 ~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~  123 (157)
T cd04164          51 VRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDS  123 (157)
T ss_pred             EEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcc
Confidence            67999999765532        12345779999999999998776665443322       2568999999999987533


Q ss_pred             cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..       .....+.+++++||+++.|+.++++++.+
T Consensus       124 ~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  154 (157)
T cd04164         124 EL-------LSLLAGKPIIAISAKTGEGLDELKEALLE  154 (157)
T ss_pred             cc-------ccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence            32       22334568999999999999999998764

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.66  E-value=1.5e-15  Score=108.54  Aligned_cols=101  Identities=24%  Similarity=0.256  Sum_probs=72.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc-ccH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQ---STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV-VGK   77 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~-~~~   77 (112)
                      +.||||||++.|..++...++.+|++++|+|+++.   .+.+.   | ..+    ...++|+++++||+|+..... ...
T Consensus       339 ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~---i-~~a----~~~~vPiIVviNKiDl~~a~~e~V~  410 (787)
T PRK05306        339 ITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEA---I-NHA----KAAGVPIIVAINKIDKPGANPDRVK  410 (787)
T ss_pred             EEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHH---H-HHH----HhcCCcEEEEEECccccccCHHHHH
Confidence            68999999999999998889999999999999873   33332   2 111    225689999999999864211 001


Q ss_pred             HHHH---HHHHHhC--CcEEEeecCCCCChhHHhhhhc
Q psy785           78 EQGA---SLARAFA--CTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        78 ~~~~---~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      ..+.   .+...++  ++++++||++|.|++++++.+.
T Consensus       411 ~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~  448 (787)
T PRK05306        411 QELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAIL  448 (787)
T ss_pred             HHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhh
Confidence            1111   1223333  6899999999999999999875

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.65  E-value=1.6e-15  Score=106.08  Aligned_cols=101  Identities=18%  Similarity=0.125  Sum_probs=75.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCcccc--
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERVV--   75 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~--   75 (112)
                      +.||||||+++|.......+.++|++++|+|+++   +.+.+.+.    .+..    .++| +++++||+|+.+....  
T Consensus        52 v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~----il~~----lgi~~iIVVlNK~Dlv~~~~~~~  123 (581)
T TIGR00475        52 LGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLA----VLDL----LGIPHTIVVITKADRVNEEEIKR  123 (581)
T ss_pred             EEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHH----HHHH----cCCCeEEEEEECCCCCCHHHHHH
Confidence            6899999999998888888899999999999987   34444332    1221    3567 9999999999753322  


Q ss_pred             cHHHHHHHHHHh----CCcEEEeecCCCCChhHHhhhhc
Q psy785           76 GKEQGASLARAF----ACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        76 ~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      ..++..++....    +++++++||++|.|++++++.+.
T Consensus       124 ~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~  162 (581)
T TIGR00475       124 TEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELK  162 (581)
T ss_pred             HHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHH
Confidence            123344444443    46899999999999999998764

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>KOG0074|consensus

Probab=99.65  E-value=2.5e-16  Score=90.64  Aligned_cols=109  Identities=23%  Similarity=0.265  Sum_probs=85.7

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      ++.+||.+||...+..|..||.+.|++|+|+|.++..-|+.+..-+.++.+.......|+.+.+||.|+...... ++..
T Consensus        63 ~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~-eeia  141 (185)
T KOG0074|consen   63 HLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKV-EEIA  141 (185)
T ss_pred             EEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcch-HHHH
Confidence            478999999999999999999999999999999999999988777777776655578999999999998643222 1111


Q ss_pred             HH----HHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785           81 AS----LARAFACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        81 ~~----~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      ..    -.+...+.+.++||.++.|+.....|+.
T Consensus       142 ~klnl~~lrdRswhIq~csals~eg~~dg~~wv~  175 (185)
T KOG0074|consen  142 LKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQ  175 (185)
T ss_pred             HhcchhhhhhceEEeeeCccccccCccCcchhhh
Confidence            11    1223356889999999999888777654

>cd00880 Era_like Era (E

Probab=99.65  E-value=2.1e-15  Score=88.65  Aligned_cols=105  Identities=17%  Similarity=0.119  Sum_probs=74.3

Q ss_pred             ceEEeCCCcccchh-------hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc
Q psy785            2 LEILDTAGTEQFTA-------MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV   74 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~   74 (112)
                      +.+|||||+..+..       .....++++|++++++|.+...+..... +......    .+.|+++++||+|+.....
T Consensus        47 ~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~----~~~~~ivv~nK~D~~~~~~  121 (163)
T cd00880          47 VVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLRE----RGKPVLLVLNKIDLLPEEE  121 (163)
T ss_pred             EEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh----cCCeEEEEEEccccCChhh
Confidence            68999999776543       4445788999999999999887665543 3333322    5789999999999875332


Q ss_pred             ccHHH---HHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           75 VGKEQ---GASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        75 ~~~~~---~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .....   ........+.+++++||+++.|+.++++++.+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~  161 (163)
T cd00880         122 EEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIE  161 (163)
T ss_pred             HHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHh
Confidence            21111   11122223569999999999999999998864

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.64  E-value=4.6e-15  Score=99.45  Aligned_cols=109  Identities=14%  Similarity=0.074  Sum_probs=79.0

Q ss_pred             ceEEeCCCcccc-------hhhHHhhcccCCEEEEEEeCC---ChhhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQF-------TAMRDLYMKNGQGFILVYSIT---AQSTFNDLSDLREQILRVKDT-DDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~-------~~~~~~~~~~~d~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~~   70 (112)
                      +.|+||||..+-       ......++++++++++|+|++   ..++++.+..|..++..+... .++|.++|+||+|+.
T Consensus       209 i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~  288 (390)
T PRK12298        209 FVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL  288 (390)
T ss_pred             EEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence            689999997531       112223688999999999988   456777777888877765322 468999999999986


Q ss_pred             CcccccHHHHHHHHHHhC--CcEEEeecCCCCChhHHhhhhcc
Q psy785           71 EERVVGKEQGASLARAFA--CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +.... .+....+.+..+  .+++++||+++.|++++++.+.+
T Consensus       289 ~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~  330 (390)
T PRK12298        289 DEEEA-EERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMT  330 (390)
T ss_pred             ChHHH-HHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHH
Confidence            53332 233444545444  37899999999999999998764

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.64  E-value=3.7e-15  Score=104.05  Aligned_cols=101  Identities=23%  Similarity=0.158  Sum_probs=71.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc----
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV----   74 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~----   74 (112)
                      +.||||||++.|..++..+++.+|++++|+|+++   +.+++.+..    +..    .++|+++++||+|+.+...    
T Consensus        71 l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~~----~~vpiIVv~NK~Dl~~~~~~~~~  142 (590)
T TIGR00491        71 LLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM----YKTPFVVAANKIDRIPGWRSHEG  142 (590)
T ss_pred             EEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HHH----cCCCEEEEEECCCccchhhhccC
Confidence            6799999999999999999999999999999987   445544322    222    4689999999999863110    


Q ss_pred             --------ccHHHH------------HHHHH------------Hh--CCcEEEeecCCCCChhHHhhhhc
Q psy785           75 --------VGKEQG------------ASLAR------------AF--ACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        75 --------~~~~~~------------~~~~~------------~~--~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                              ......            .++..            ++  ..+++++||++|.|++++..++.
T Consensus       143 ~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~  212 (590)
T TIGR00491       143 RPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLA  212 (590)
T ss_pred             chHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHH
Confidence                    000000            01110            11  25899999999999999998764

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>KOG1673|consensus

Probab=99.63  E-value=2e-15  Score=88.15  Aligned_cols=106  Identities=21%  Similarity=0.339  Sum_probs=86.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc--cc---cc
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE--RV---VG   76 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~--~~---~~   76 (112)
                      +.+||.+|++++..+.+..-.++-+++++||.+.+.+++++..|+.+....+. ..+| ++||+|.|.--.  ++   ..
T Consensus        71 fSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~Nk-tAiP-ilvGTKyD~fi~lp~e~Q~~I  148 (205)
T KOG1673|consen   71 FSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNK-TAIP-ILVGTKYDLFIDLPPELQETI  148 (205)
T ss_pred             EEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCC-ccce-EEeccchHhhhcCCHHHHHHH
Confidence            67999999999998888888999999999999999999999999999877542 3455 567999996311  11   11


Q ss_pred             HHHHHHHHHHhCCcEEEeecCCCCChhHHhhhh
Q psy785           77 KEQGASLARAFACTFLETSAKAKVNSWLCVECT  109 (112)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l  109 (112)
                      ...++.+++-.+.+.+++|+..+.||..+|+-+
T Consensus       149 ~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~v  181 (205)
T KOG1673|consen  149 SRQARKYAKVMNASLFFCSTSHSINVQKIFKIV  181 (205)
T ss_pred             HHHHHHHHHHhCCcEEEeeccccccHHHHHHHH
Confidence            234566777788999999999999999999764

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.63  E-value=2.6e-15  Score=101.27  Aligned_cols=107  Identities=17%  Similarity=0.109  Sum_probs=72.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc--cHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV--GKEQ   79 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~   79 (112)
                      +.+|||||+++|...+......+|++++|+|+++..........+..+.. .  ...|+++++||+|+.+....  ...+
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~--gi~~iIVvvNK~Dl~~~~~~~~~~~~  158 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-I--GIKNIVIVQNKIDLVSKEKALENYEE  158 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-c--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence            68999999999987777778899999999999864211111122222221 1  22478999999998753221  1122


Q ss_pred             HHHHHHHh---CCcEEEeecCCCCChhHHhhhhcc
Q psy785           80 GASLARAF---ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        80 ~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..++....   +++++++||++|.|+++++++|.+
T Consensus       159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~  193 (406)
T TIGR03680       159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEK  193 (406)
T ss_pred             HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHH
Confidence            33333332   568999999999999999998864

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.63  E-value=1.1e-15  Score=103.68  Aligned_cols=103  Identities=16%  Similarity=0.073  Sum_probs=68.8

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc----
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFND--LSDLREQILRVKDTDDVPMVLVGNKCDLEEERV----   74 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~----   74 (112)
                      ++.||||||+++|.......++++|++++|+|+++.++...  ...+. .+.+..  ...|+++++||+|+.+...    
T Consensus        86 ~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~--~~~~iIVviNK~Dl~~~~~~~~~  162 (426)
T TIGR00483        86 EVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHA-FLARTL--GINQLIVAINKMDSVNYDEEEFE  162 (426)
T ss_pred             EEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHH-HHHHHc--CCCeEEEEEEChhccCccHHHHH
Confidence            36899999999887666666789999999999988743211  11111 122221  2357889999999963211    


Q ss_pred             ccHHHHHHHHHHhC-----CcEEEeecCCCCChhHHh
Q psy785           75 VGKEQGASLARAFA-----CTFLETSAKAKVNSWLCV  106 (112)
Q Consensus        75 ~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~  106 (112)
                      ....+..++++..+     ++++++||++|.|+.+++
T Consensus       163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence            11234445555554     579999999999998643

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK11058 GTPase HflX; Provisional

Probab=99.62  E-value=7.9e-15  Score=99.28  Aligned_cols=104  Identities=13%  Similarity=0.119  Sum_probs=71.7

Q ss_pred             ceEEeCCCcccc--hhhHH------hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQF--TAMRD------LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~--~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~   73 (112)
                      +.+|||||..+.  ..++.      ..++++|++++|+|++++.+.+.+..|...+... ...++|+++|+||+|+.+..
T Consensus       247 ~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el-~~~~~pvIiV~NKiDL~~~~  325 (426)
T PRK11058        247 TVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEI-DAHEIPTLLVMNKIDMLDDF  325 (426)
T ss_pred             EEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHh-ccCCCCEEEEEEcccCCCch
Confidence            579999997432  22222      2468999999999999988777765544433332 22468999999999986421


Q ss_pred             cccHHHHHHHHHHhCCc-EEEeecCCCCChhHHhhhhcc
Q psy785           74 VVGKEQGASLARAFACT-FLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 ~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .   ....  ....+.+ ++++||++|.|++++++++.+
T Consensus       326 ~---~~~~--~~~~~~~~~v~ISAktG~GIdeL~e~I~~  359 (426)
T PRK11058        326 E---PRID--RDEENKPIRVWLSAQTGAGIPLLFQALTE  359 (426)
T ss_pred             h---HHHH--HHhcCCCceEEEeCCCCCCHHHHHHHHHH
Confidence            1   1111  1123555 588999999999999998864

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.62  E-value=5.8e-15  Score=99.71  Aligned_cols=106  Identities=22%  Similarity=0.140  Sum_probs=69.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc--HH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG--KE   78 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~   78 (112)
                      +.||||||+++|......-..++|++++|+|++++. .-+....+ ..+.. .  ...|+++++||+|+.+.....  .+
T Consensus        87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-~~l~~-~--~i~~iiVVlNK~Dl~~~~~~~~~~~  162 (411)
T PRK04000         87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-MALDI-I--GIKNIVIVQNKIDLVSKERALENYE  162 (411)
T ss_pred             EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-HHHHH-c--CCCcEEEEEEeeccccchhHHHHHH
Confidence            689999999988665555556789999999998542 11111111 11221 1  224689999999986532211  12


Q ss_pred             HHHHHHHHh---CCcEEEeecCCCCChhHHhhhhcc
Q psy785           79 QGASLARAF---ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        79 ~~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +...+....   +.+++++||++|.|++++++.+.+
T Consensus       163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~  198 (411)
T PRK04000        163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEE  198 (411)
T ss_pred             HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHH
Confidence            233333322   468999999999999999998764

>cd01895 EngA2 EngA2 subfamily

Probab=99.62  E-value=2.4e-14  Score=85.64  Aligned_cols=105  Identities=21%  Similarity=0.195  Sum_probs=70.2

Q ss_pred             ceEEeCCCcccc----------h-hhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQF----------T-AMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~----------~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      +.+|||||..+.          . ......++++|++++|+|.+++.+.... .+...+..    .+.|+++++||+|+.
T Consensus        52 ~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~  126 (174)
T cd01895          52 YTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLV  126 (174)
T ss_pred             EEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccC
Confidence            579999996432          1 1112356799999999999888665443 23233222    458999999999987


Q ss_pred             CcccccHHHHHH-HHHHh----CCcEEEeecCCCCChhHHhhhhcc
Q psy785           71 EERVVGKEQGAS-LARAF----ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        71 ~~~~~~~~~~~~-~~~~~----~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +..........+ ..+..    ..+++++||+++.|+.++++.+..
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  172 (174)
T cd01895         127 EKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDE  172 (174)
T ss_pred             CccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHH
Confidence            543222222222 22223    358999999999999999998753

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.60  E-value=1.4e-14  Score=98.41  Aligned_cols=98  Identities=17%  Similarity=0.216  Sum_probs=69.6

Q ss_pred             ceEEeCCCccc--------chhhHHhhcccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785            2 LEILDTAGTEQ--------FTAMRDLYMKNGQGFILVYSITAQSTFN--DLSDLREQILRVKDTDDVPMVLVGNKCDLEE   71 (112)
Q Consensus         2 ~~i~Dt~g~~~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~   71 (112)
                      +++|||||++.        +......+++++|++++|+|..+..+..  .+..|+..       .++|+++|+||+|+.+
T Consensus        51 ~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~-------~~~piilv~NK~D~~~  123 (435)
T PRK00093         51 FILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK-------SNKPVILVVNKVDGPD  123 (435)
T ss_pred             EEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-------cCCcEEEEEECccCcc
Confidence            78999999887        2233455688999999999998753332  23344332       3689999999999753


Q ss_pred             cccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           72 ERVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .    .....++ ..+++ .++++||++|.|+.++++.+.+
T Consensus       124 ~----~~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~  159 (435)
T PRK00093        124 E----EADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILE  159 (435)
T ss_pred             c----hhhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence            1    1222222 34566 5899999999999999998764

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.60  E-value=1.9e-14  Score=89.35  Aligned_cols=101  Identities=22%  Similarity=0.062  Sum_probs=65.3

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc----c
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV----G   76 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~----~   76 (112)
                      .+.+|||||+++|...+...++.+|++++|+|++....-+.. .... +....  ...++++|+||+|+.+....    .
T Consensus        78 ~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~~~-~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i  153 (208)
T cd04166          78 KFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-RHSY-ILSLL--GIRHVVVAVNKMDLVDYSEEVFEEI  153 (208)
T ss_pred             eEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-HHHH-HHHHc--CCCcEEEEEEchhcccCCHHHHHHH
Confidence            368999999998876666678999999999999865322211 1111 11211  12357778999998642211    1


Q ss_pred             HHHHHHHHHHhCC---cEEEeecCCCCChhHH
Q psy785           77 KEQGASLARAFAC---TFLETSAKAKVNSWLC  105 (112)
Q Consensus        77 ~~~~~~~~~~~~~---~~~~~Sa~~~~~v~~~  105 (112)
                      ..+..++.+.+++   +++++||++|.|+.+.
T Consensus       154 ~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         154 VADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            1233444455553   5899999999998764

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.59  E-value=3.8e-15  Score=84.66  Aligned_cols=65  Identities=31%  Similarity=0.627  Sum_probs=53.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHH---HHHHHHhhcCCCCCcEEEEeeCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD---LREQILRVKDTDDVPMVLVGNKCD   68 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~i~~~~~~~~~p~ivv~nK~D   68 (112)
                      +++||++|++.+...+...+.++|++++|||.+++.+++.+..   |+..+...  ..++|+++|+||.|
T Consensus        52 ~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D  119 (119)
T PF08477_consen   52 LQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD  119 (119)
T ss_dssp             EEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred             EEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence            5799999999988877778999999999999999999988754   55555543  25599999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK00089 era GTPase Era; Reviewed

Probab=99.59  E-value=1.6e-14  Score=93.67  Aligned_cols=105  Identities=16%  Similarity=0.078  Sum_probs=70.8

Q ss_pred             ceEEeCCCcccch--------hhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQFT--------AMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~--------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~   73 (112)
                      +.+|||||.....        ......+.++|++++|+|+++..+- ........+.    ..+.|+++|+||+|+...+
T Consensus        55 i~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~-~~~~i~~~l~----~~~~pvilVlNKiDl~~~~  129 (292)
T PRK00089         55 IIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGP-GDEFILEKLK----KVKTPVILVLNKIDLVKDK  129 (292)
T ss_pred             EEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCh-hHHHHHHHHh----hcCCCEEEEEECCcCCCCH
Confidence            6799999965432        2333457899999999999873211 1112222222    2458999999999997433


Q ss_pred             cccHHHHHHHHHHhC-CcEEEeecCCCCChhHHhhhhcc
Q psy785           74 VVGKEQGASLARAFA-CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 ~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .........+....+ .+++++||+++.|++++++++.+
T Consensus       130 ~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~  168 (292)
T PRK00089        130 EELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAK  168 (292)
T ss_pred             HHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHH
Confidence            322334445555444 48999999999999999998764

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.59  E-value=1.2e-14  Score=101.69  Aligned_cols=106  Identities=16%  Similarity=0.130  Sum_probs=77.0

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc-cHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV-GKEQ   79 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~   79 (112)
                      ++.+|||||+.+|...+...++.+|++++|+|+++. .......|+..+..    .++|+++++||+|+...+.. ...+
T Consensus        65 kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~e  139 (594)
T TIGR01394        65 KINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDE  139 (594)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHH
Confidence            378999999999998889999999999999999763 23334456555554    46899999999998643211 1222


Q ss_pred             HHHHHH-------HhCCcEEEeecCCCC----------ChhHHhhhhcc
Q psy785           80 GASLAR-------AFACTFLETSAKAKV----------NSWLCVECTND  111 (112)
Q Consensus        80 ~~~~~~-------~~~~~~~~~Sa~~~~----------~v~~~~~~l~~  111 (112)
                      ...+..       ...++++++||++|.          |+..+|+.+.+
T Consensus       140 i~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~  188 (594)
T TIGR01394       140 VFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVR  188 (594)
T ss_pred             HHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHH
Confidence            233322       235689999999996          78888887764

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.58  E-value=9e-15  Score=99.21  Aligned_cols=104  Identities=16%  Similarity=0.076  Sum_probs=66.2

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc----cc
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV----VG   76 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~----~~   76 (112)
                      ++.||||||+++|.......++++|++++|+|++++.++.....+...+....  ...|+++++||+|+.+...    ..
T Consensus        85 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~~  162 (425)
T PRK12317         85 YFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYEEV  162 (425)
T ss_pred             EEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHHHH
Confidence            36899999999886545455789999999999986312211111111122211  2246899999999864211    11


Q ss_pred             HHHHHHHHHHhC-----CcEEEeecCCCCChhHHh
Q psy785           77 KEQGASLARAFA-----CTFLETSAKAKVNSWLCV  106 (112)
Q Consensus        77 ~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~  106 (112)
                      .++..++....+     ++++++||++|.|+.++.
T Consensus       163 ~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        163 KEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence            233444454444     479999999999998744

>cd04163 Era Era subfamily

Probab=99.57  E-value=4e-14  Score=84.00  Aligned_cols=105  Identities=17%  Similarity=0.049  Sum_probs=71.0

Q ss_pred             ceEEeCCCcccchh--------hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQFTA--------MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~--------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~   73 (112)
                      +.+|||||......        .....+.++|++++++|.+++.+- ....+...+..    .+.|+++++||+|+....
T Consensus        53 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~----~~~~~iiv~nK~Dl~~~~  127 (168)
T cd04163          53 IIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGE-GDEFILELLKK----SKTPVILVLNKIDLVKDK  127 (168)
T ss_pred             EEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCc-hHHHHHHHHHH----hCCCEEEEEEchhccccH
Confidence            57999999764322        334457899999999999886211 11122233332    358999999999986433


Q ss_pred             cccHHHHHHHHHHhC-CcEEEeecCCCCChhHHhhhhcc
Q psy785           74 VVGKEQGASLARAFA-CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 ~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ....+....+....+ .+++++|++++.|++++++.+.+
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~  166 (168)
T cd04163         128 EDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVK  166 (168)
T ss_pred             HHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHh
Confidence            222333334444443 58999999999999999998865

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.57  E-value=2.3e-14  Score=89.62  Aligned_cols=100  Identities=15%  Similarity=0.058  Sum_probs=64.0

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh-------hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc-
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS-------TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE-   72 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~-   72 (112)
                      .+.+|||||+.+|...+...++.+|++++|+|+++..       ..+....| ... ..  ....|+++++||+|+... 
T Consensus        78 ~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~-~~--~~~~~iiivvNK~Dl~~~~  153 (219)
T cd01883          78 RFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLA-RT--LGVKQLIVAVNKMDDVTVN  153 (219)
T ss_pred             EEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHH-HH--cCCCeEEEEEEcccccccc
Confidence            3689999999888766666678899999999998742       11122222 111 11  123688899999998631 


Q ss_pred             -cccc----HHHHHHHHHHhC-----CcEEEeecCCCCChhH
Q psy785           73 -RVVG----KEQGASLARAFA-----CTFLETSAKAKVNSWL  104 (112)
Q Consensus        73 -~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~  104 (112)
                       ....    .+.+.......+     ++++++||++|.|+.+
T Consensus       154 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~  195 (219)
T cd01883         154 WSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE  195 (219)
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence             1111    112222333333     5799999999999874

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.56  E-value=5.3e-14  Score=100.54  Aligned_cols=100  Identities=18%  Similarity=0.158  Sum_probs=68.2

Q ss_pred             ceEEeCCCccc--------chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQ--------FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~   73 (112)
                      +.+|||||.+.        +......+++.+|++++|+|.++.-.... ..|...+..    .++|+++|+||+|+....
T Consensus       325 ~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~----~~~pvIlV~NK~D~~~~~  399 (712)
T PRK09518        325 FKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR----AGKPVVLAVNKIDDQASE  399 (712)
T ss_pred             EEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh----cCCCEEEEEECcccccch
Confidence            68999999763        23344556889999999999976422111 134444433    568999999999985321


Q ss_pred             cccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           74 VVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 ~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                          ....++ ...+. ..+++||++|.|+.++++++.+
T Consensus       400 ----~~~~~~-~~lg~~~~~~iSA~~g~GI~eLl~~i~~  433 (712)
T PRK09518        400 ----YDAAEF-WKLGLGEPYPISAMHGRGVGDLLDEALD  433 (712)
T ss_pred             ----hhHHHH-HHcCCCCeEEEECCCCCCchHHHHHHHH
Confidence                111222 22344 5689999999999999998764

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.56  E-value=6.1e-14  Score=98.62  Aligned_cols=102  Identities=18%  Similarity=0.151  Sum_probs=71.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCccccc-
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQ---STFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERVVG-   76 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~~-   76 (112)
                      +.||||||+++|.......+.++|++++|+|++..   .+.+.+    ..+..    .++| +++|+||+|+.+..... 
T Consensus        53 i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl----~il~~----lgi~~iIVVlNKiDlv~~~~~~~  124 (614)
T PRK10512         53 LGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHL----AILQL----TGNPMLTVALTKADRVDEARIAE  124 (614)
T ss_pred             EEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHH----HHHHH----cCCCeEEEEEECCccCCHHHHHH
Confidence            57999999999976666678899999999998763   333332    11221    2355 57899999986532221 


Q ss_pred             -HHHHHHHHHHhC---CcEEEeecCCCCChhHHhhhhcc
Q psy785           77 -KEQGASLARAFA---CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        77 -~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                       .++..++....+   .+++++||++|.|++++++.+.+
T Consensus       125 v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~  163 (614)
T PRK10512        125 VRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQ  163 (614)
T ss_pred             HHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHH
Confidence             223334444434   58999999999999999998753

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.56  E-value=3.7e-14  Score=101.31  Aligned_cols=103  Identities=18%  Similarity=0.225  Sum_probs=70.3

Q ss_pred             ceEEeCCCccc----------chhhH-HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQ----------FTAMR-DLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~----------~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      +.+|||||+.+          |..+. ...++++|++++|+|+++..+.+.... ...+..    .++|+++|+||+|+.
T Consensus       500 ~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i-~~~~~~----~~~piIiV~NK~DL~  574 (712)
T PRK09518        500 WLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKV-MSMAVD----AGRALVLVFNKWDLM  574 (712)
T ss_pred             EEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH----cCCCEEEEEEchhcC
Confidence            57999999642          22222 234789999999999998877776543 333333    468999999999996


Q ss_pred             CcccccHHHHHH-HHHHh----CCcEEEeecCCCCChhHHhhhhcc
Q psy785           71 EERVVGKEQGAS-LARAF----ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        71 ~~~~~~~~~~~~-~~~~~----~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +...  .+...+ +...+    ..+++++||++|.|++++++.+.+
T Consensus       575 ~~~~--~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~  618 (712)
T PRK09518        575 DEFR--RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQE  618 (712)
T ss_pred             ChhH--HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            4321  112222 22221    237899999999999999998753

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.55  E-value=7.6e-14  Score=94.72  Aligned_cols=98  Identities=16%  Similarity=0.198  Sum_probs=70.3

Q ss_pred             ceEEeCCCc--------ccchhhHHhhcccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785            2 LEILDTAGT--------EQFTAMRDLYMKNGQGFILVYSITAQSTFN--DLSDLREQILRVKDTDDVPMVLVGNKCDLEE   71 (112)
Q Consensus         2 ~~i~Dt~g~--------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~   71 (112)
                      +.+|||||.        +.+......+++++|++++|+|.....+..  .+..|+   .+    .++|+++|+||+|+.+
T Consensus        49 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l---~~----~~~piilVvNK~D~~~  121 (429)
T TIGR03594        49 FILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWL---RK----SGKPVILVANKIDGKK  121 (429)
T ss_pred             EEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHH---HH----hCCCEEEEEECccCCc
Confidence            689999996        334455666789999999999997653332  233333   22    3589999999999864


Q ss_pred             cccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           72 ERVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ....    . .....+++ +++++||+.|.|+.++++.+.+
T Consensus       122 ~~~~----~-~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~  157 (429)
T TIGR03594       122 EDAV----A-AEFYSLGFGEPIPISAEHGRGIGDLLDAILE  157 (429)
T ss_pred             cccc----H-HHHHhcCCCCeEEEeCCcCCChHHHHHHHHH
Confidence            3321    1 12345677 8999999999999999998753

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.54  E-value=9.3e-14  Score=84.32  Aligned_cols=97  Identities=18%  Similarity=0.198  Sum_probs=62.5

Q ss_pred             ceEEeCCCcc----------cchhhHHhhcc---cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785            2 LEILDTAGTE----------QFTAMRDLYMK---NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD   68 (112)
Q Consensus         2 ~~i~Dt~g~~----------~~~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D   68 (112)
                      +.+|||||..          .+..+...+++   .++++++++|.+++-+..... ++..+..    .++|+++++||+|
T Consensus        66 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~----~~~pviiv~nK~D  140 (179)
T TIGR03598        66 FRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE----RGIPVLIVLTKAD  140 (179)
T ss_pred             EEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcc
Confidence            6899999942          34444445554   468999999998754444332 2222222    4689999999999


Q ss_pred             CCCcccc--cHHHHHHHHHHhC--CcEEEeecCCCCChh
Q psy785           69 LEEERVV--GKEQGASLARAFA--CTFLETSAKAKVNSW  103 (112)
Q Consensus        69 ~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~  103 (112)
                      +.+....  ..++.++.....+  .+++++||++|.|++
T Consensus       141 ~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       141 KLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             cCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence            8643221  1233344444433  489999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.54  E-value=1.2e-13  Score=84.61  Aligned_cols=105  Identities=15%  Similarity=0.128  Sum_probs=67.6

Q ss_pred             ceEEeCCCc----------ccchhhHHhhccc---CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785            2 LEILDTAGT----------EQFTAMRDLYMKN---GQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD   68 (112)
Q Consensus         2 ~~i~Dt~g~----------~~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D   68 (112)
                      +.+|||||.          +++..+...+++.   ++++++++|.+.+.+.... .....+..    .++|+++++||+|
T Consensus        72 l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~----~~~~~iiv~nK~D  146 (196)
T PRK00454         72 LRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE----YGIPVLIVLTKAD  146 (196)
T ss_pred             EEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH----cCCcEEEEEECcc
Confidence            679999994          3445555555554   4678888998765433221 11111221    4689999999999


Q ss_pred             CCCccccc--HHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           69 LEEERVVG--KEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        69 ~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +.+.....  .....+.......+++++||+++.|++++++.+.+
T Consensus       147 l~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~  191 (196)
T PRK00454        147 KLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAK  191 (196)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHH
Confidence            86533211  12233333333579999999999999999998753

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.54  E-value=6.7e-14  Score=86.61  Aligned_cols=70  Identities=20%  Similarity=0.367  Sum_probs=57.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccC-CEEEEEEeCCCh-hhHHHHHHHHHHHHhhcC--CCCCcEEEEeeCCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNG-QGFILVYSITAQ-STFNDLSDLREQILRVKD--TDDVPMVLVGNKCDLEE   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~-d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~~~   71 (112)
                      +++|||||++++...+..+++++ +++|+|+|+++. .++.....|+..+.....  ..++|+++++||+|+..
T Consensus        50 ~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          50 FRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             EEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            68999999999988888899998 999999999987 677777777665544322  15799999999999864

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.53  E-value=2e-13  Score=99.98  Aligned_cols=101  Identities=23%  Similarity=0.234  Sum_probs=70.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc--
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG--   76 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~--   76 (112)
                      +.||||||++.|..+....+..+|++++|+|+++   +.+++.+.    .+..    .++|+++++||+|+.+....+  
T Consensus       528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~----~~iPiIVViNKiDL~~~~~~~~~  599 (1049)
T PRK14845        528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ----YKTPFVVAANKIDLIPGWNISED  599 (1049)
T ss_pred             EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH----cCCCEEEEEECCCCccccccccc
Confidence            6899999999998888888889999999999986   44444432    2222    358999999999985321100  


Q ss_pred             --------------HHHHH----HH----H------------HHh--CCcEEEeecCCCCChhHHhhhhc
Q psy785           77 --------------KEQGA----SL----A------------RAF--ACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        77 --------------~~~~~----~~----~------------~~~--~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                                    ..+..    +.    .            +++  ..+++++||++|.|++++...+.
T Consensus       600 ~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~  669 (1049)
T PRK14845        600 EPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVA  669 (1049)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHH
Confidence                          00110    00    0            111  24899999999999999998764

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.53  E-value=1.5e-13  Score=96.25  Aligned_cols=101  Identities=22%  Similarity=0.184  Sum_probs=70.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc--c
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV--G   76 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~--~   76 (112)
                      +.||||||+++|..++...++.+|++++|+|+++   +.+++.+..    +..    .++|+++++||+|+......  .
T Consensus        73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~----~~vpiIvviNK~D~~~~~~~~~~  144 (586)
T PRK04004         73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR----RKTPFVVAANKIDRIPGWKSTED  144 (586)
T ss_pred             EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH----cCCCEEEEEECcCCchhhhhhcC
Confidence            5799999999999988888899999999999987   555554432    222    46899999999998521000  0


Q ss_pred             --------------HHH-------HHHHHHHh---------------CCcEEEeecCCCCChhHHhhhhc
Q psy785           77 --------------KEQ-------GASLARAF---------------ACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        77 --------------~~~-------~~~~~~~~---------------~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                                    ...       ......+.               ..+++++||++|.|+.++++.+.
T Consensus       145 ~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~  214 (586)
T PRK04004        145 APFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLA  214 (586)
T ss_pred             chHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHH
Confidence                          000       00011111               24789999999999999887653

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.52  E-value=5.5e-14  Score=83.36  Aligned_cols=100  Identities=20%  Similarity=0.222  Sum_probs=67.3

Q ss_pred             ceEEeCCCcccch------hhHHhhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQFT------AMRDLYM--KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~   73 (112)
                      ++++|+||.....      ...+.++  ..+|+++.|+|.++.+.-..   ...++.+    .++|++++.||+|...++
T Consensus        49 ~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l~---l~~ql~e----~g~P~vvvlN~~D~a~~~  121 (156)
T PF02421_consen   49 VELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLERNLY---LTLQLLE----LGIPVVVVLNKMDEAERK  121 (156)
T ss_dssp             EEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHHHH---HHHHHHH----TTSSEEEEEETHHHHHHT
T ss_pred             EEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHHHH---HHHHHHH----cCCCEEEEEeCHHHHHHc
Confidence            6899999954322      2333343  58999999999987543222   2333444    469999999999986544


Q ss_pred             cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhh
Q psy785           74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECT  109 (112)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l  109 (112)
                      .... ....+.+.+++|++++||+++.|++++++.+
T Consensus       122 g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  122 GIEI-DAEKLSERLGVPVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             TEEE--HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred             CCEE-CHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence            4322 3566777889999999999999999998764

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.52  E-value=8e-14  Score=94.80  Aligned_cols=103  Identities=23%  Similarity=0.220  Sum_probs=69.1

Q ss_pred             ceEEeCCCcccc----------hhh-HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQF----------TAM-RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~----------~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      +.+|||||..+.          ... ...+++.+|++++|+|++++.+.++.. +...+.+    .+.|+++++||+|+.
T Consensus       223 ~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~----~~~~~ivv~NK~Dl~  297 (435)
T PRK00093        223 YTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR-IAGLALE----AGRALVIVVNKWDLV  297 (435)
T ss_pred             EEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCcEEEEEECccCC
Confidence            679999996432          211 223678999999999999876665542 2333332    468999999999987


Q ss_pred             CcccccHHHHHHHHHH----hCCcEEEeecCCCCChhHHhhhhc
Q psy785           71 EERVVGKEQGASLARA----FACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        71 ~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      +.... .+........    ...+++++||++|.|+.++++.+.
T Consensus       298 ~~~~~-~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~  340 (435)
T PRK00093        298 DEKTM-EEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAID  340 (435)
T ss_pred             CHHHH-HHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHH
Confidence            42211 1111112222    246999999999999999998764

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.52  E-value=4.8e-13  Score=83.94  Aligned_cols=104  Identities=15%  Similarity=0.106  Sum_probs=67.4

Q ss_pred             ceEEeCCCcccchhhHHhhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc--H
Q psy785            2 LEILDTAGTEQFTAMRDLYM--KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG--K   77 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~--~   77 (112)
                      +.+.||||+++|.......+  ..+|++++|+|+.....-. ...++..+..    .++|++++.||+|+.+.....  .
T Consensus        86 i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~----~~ip~ivvvNK~D~~~~~~~~~~~  160 (224)
T cd04165          86 VTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALA----LNIPVFVVVTKIDLAPANILQETL  160 (224)
T ss_pred             EEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCEEEEEECccccCHHHHHHHH
Confidence            67999999998855333333  3689999999987643322 2233333333    458999999999986432211  1


Q ss_pred             HHHHHHHHH--------------------------hCCcEEEeecCCCCChhHHhhhhc
Q psy785           78 EQGASLARA--------------------------FACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        78 ~~~~~~~~~--------------------------~~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      .+..+....                          ...|++.+||.+|.|++++.+.|.
T Consensus       161 ~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         161 KDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            111222110                          123899999999999999988764

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>KOG0462|consensus

Probab=99.51  E-value=1.5e-13  Score=93.73  Aligned_cols=103  Identities=19%  Similarity=0.216  Sum_probs=79.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      ++++||||+.+|.......+.-|+|+++|+|.+..---+.+.+++..+.     .+..+|.|.||+|++..+.  +....
T Consensus       127 LNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~adp--e~V~~  199 (650)
T KOG0462|consen  127 LNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSADP--ERVEN  199 (650)
T ss_pred             EEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCCH--HHHHH
Confidence            6899999999998888888899999999999988765666666555543     4688999999999975332  22222


Q ss_pred             HHHHHhC---CcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFA---CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~---~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +...-++   -+.+.+||++|.|++++++++++
T Consensus       200 q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~  232 (650)
T KOG0462|consen  200 QLFELFDIPPAEVIYVSAKTGLNVEELLEAIIR  232 (650)
T ss_pred             HHHHHhcCCccceEEEEeccCccHHHHHHHHHh
Confidence            3333333   38999999999999999999875

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.51  E-value=2.3e-13  Score=97.64  Aligned_cols=101  Identities=16%  Similarity=0.192  Sum_probs=75.0

Q ss_pred             ceEEeCCCcccchhh----------HHhhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785            2 LEILDTAGTEQFTAM----------RDLYM--KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL   69 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~----------~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~   69 (112)
                      +++|||||+.++...          .+.++  ..+|++++|+|.++.+...   .|..++.+    .++|+++++||+|+
T Consensus        52 i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l---~l~~ql~e----~giPvIvVlNK~Dl  124 (772)
T PRK09554         52 VTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNL---YLTLQLLE----LGIPCIVALNMLDI  124 (772)
T ss_pred             EEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhH---HHHHHHHH----cCCCEEEEEEchhh
Confidence            689999998876421          22232  4899999999998754322   24344443    46899999999998


Q ss_pred             CCcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785           70 EEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      .+.+.. ....+++.+.++++++++||++|.|++++.+.+.
T Consensus       125 ~~~~~i-~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~  164 (772)
T PRK09554        125 AEKQNI-RIDIDALSARLGCPVIPLVSTRGRGIEALKLAID  164 (772)
T ss_pred             hhccCc-HHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHH
Confidence            654443 3455677788899999999999999999988764

>PRK10218 GTP-binding protein; Provisional

Probab=99.51  E-value=4.2e-13  Score=94.17  Aligned_cols=106  Identities=17%  Similarity=0.104  Sum_probs=73.7

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc-ccHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV-VGKEQ   79 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~   79 (112)
                      ++++|||||+.+|...+..+++.+|++++|+|+++....+. ..++..+..    .++|.++++||+|+..... ....+
T Consensus        69 ~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~e  143 (607)
T PRK10218         69 RINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQ  143 (607)
T ss_pred             EEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHH
Confidence            36899999999999999999999999999999986432222 233333333    4689999999999864221 11222


Q ss_pred             HHHHHHH-------hCCcEEEeecCCCC----------ChhHHhhhhcc
Q psy785           80 GASLARA-------FACTFLETSAKAKV----------NSWLCVECTND  111 (112)
Q Consensus        80 ~~~~~~~-------~~~~~~~~Sa~~~~----------~v~~~~~~l~~  111 (112)
                      .......       ..++++++||++|.          |+..+++.+++
T Consensus       144 i~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~  192 (607)
T PRK10218        144 VFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVD  192 (607)
T ss_pred             HHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHH
Confidence            2332211       24789999999998          57777776653

>cd04167 Snu114p Snu114p subfamily

Probab=99.48  E-value=4.7e-13  Score=83.35  Aligned_cols=64  Identities=28%  Similarity=0.393  Sum_probs=50.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      +.+|||||+++|......++..+|++++|+|.+...+... ..|+.....    .++|+++++||+|+.
T Consensus        73 i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~  136 (213)
T cd04167          73 FNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL  136 (213)
T ss_pred             EEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence            6899999999998888888999999999999987665433 334443332    358999999999974

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.48  E-value=5e-13  Score=77.91  Aligned_cols=100  Identities=15%  Similarity=0.119  Sum_probs=71.4

Q ss_pred             eEEeCCCcc----cchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHH
Q psy785            3 EILDTAGTE----QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKE   78 (112)
Q Consensus         3 ~i~Dt~g~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~   78 (112)
                      .++||||.-    +++.-.-....+||.++++.|.+++.+.-.     +.+.   ...+.|+|-|+||+|+..+ ....+
T Consensus        39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~p-----P~fa---~~f~~pvIGVITK~Dl~~~-~~~i~  109 (143)
T PF10662_consen   39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFP-----PGFA---SMFNKPVIGVITKIDLPSD-DANIE  109 (143)
T ss_pred             cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCC-----chhh---cccCCCEEEEEECccCccc-hhhHH
Confidence            468999933    333333344569999999999998753211     1111   1246899999999999732 22455


Q ss_pred             HHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           79 QGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        79 ~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ...++.+..|+ ++|++|+.+|.|++++.++|.+
T Consensus       110 ~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~~  143 (143)
T PF10662_consen  110 RAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLEE  143 (143)
T ss_pred             HHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHhC
Confidence            66677777787 7899999999999999998753

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.48  E-value=3.9e-13  Score=90.68  Aligned_cols=103  Identities=17%  Similarity=0.206  Sum_probs=81.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      |+++||||+.+|.--....+..|.|.++++|.++.-.-+.+.+.+..+.     .+..++-|.||+|++....  +...+
T Consensus        78 lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adp--ervk~  150 (603)
T COG0481          78 LNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADP--ERVKQ  150 (603)
T ss_pred             EEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCH--HHHHH
Confidence            7899999999997767777889999999999998766677777666654     4578899999999975321  22333


Q ss_pred             HHHHHhCC---cEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFAC---TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~---~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++..-.|+   ..+.+|||+|.||+++++.+++
T Consensus       151 eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~  183 (603)
T COG0481         151 EIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVE  183 (603)
T ss_pred             HHHHHhCCCcchheeEecccCCCHHHHHHHHHh
Confidence            44444565   6789999999999999999875

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=1.2e-12  Score=89.08  Aligned_cols=98  Identities=27%  Similarity=0.280  Sum_probs=72.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKE   78 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~   78 (112)
                      +.|.||||++.|..++..=..=+|.+++|+++++   |.+.+.+..    ++    ..+.|+++..||+|..+..   +.
T Consensus        57 itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~h----ak----~a~vP~iVAiNKiDk~~~n---p~  125 (509)
T COG0532          57 ITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINH----AK----AAGVPIVVAINKIDKPEAN---PD  125 (509)
T ss_pred             EEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHH----HH----HCCCCEEEEEecccCCCCC---HH
Confidence            6899999999999988766677899999999987   345554432    22    3679999999999987422   22


Q ss_pred             HHH-HH------HHHhC--CcEEEeecCCCCChhHHhhhhc
Q psy785           79 QGA-SL------ARAFA--CTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        79 ~~~-~~------~~~~~--~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      ... ++      ...++  ..++++||++|.|+.+++..+.
T Consensus       126 ~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~il  166 (509)
T COG0532         126 KVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELIL  166 (509)
T ss_pred             HHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHH
Confidence            222 21      12222  4799999999999999998764

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.46  E-value=8.6e-13  Score=82.64  Aligned_cols=64  Identities=23%  Similarity=0.300  Sum_probs=50.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      +.+|||||+++|.......++.+|++++|+|++.....+....| .....    .++|+++++||+|+.
T Consensus        75 i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l-~~~~~----~~~p~ilviNKiD~~  138 (222)
T cd01885          75 INLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVL-RQALK----ERVKPVLVINKIDRL  138 (222)
T ss_pred             EEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHH-HHHHH----cCCCEEEEEECCCcc
Confidence            68999999999999899999999999999999876555432222 22222    458999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK12289 GTPase RsgA; Reviewed

Probab=99.46  E-value=5.6e-13  Score=88.33  Aligned_cols=94  Identities=17%  Similarity=0.129  Sum_probs=69.6

Q ss_pred             cchhhHHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCc
Q psy785           12 QFTAMRDLYMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACT   90 (112)
Q Consensus        12 ~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~   90 (112)
                      +.+.+.+..+.++|.+++|+|+.++. +...+..|+..+..    .++|+++|+||+|+.+....  ..........+++
T Consensus        78 R~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~----~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~  151 (352)
T PRK12289         78 RKTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES----TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQ  151 (352)
T ss_pred             cccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCe
Confidence            34456667789999999999998775 44456777765533    56899999999999643221  2222333456889


Q ss_pred             EEEeecCCCCChhHHhhhhcc
Q psy785           91 FLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        91 ~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++||+++.|++++++.+.+
T Consensus       152 v~~iSA~tg~GI~eL~~~L~~  172 (352)
T PRK12289        152 PLFISVETGIGLEALLEQLRN  172 (352)
T ss_pred             EEEEEcCCCCCHHHHhhhhcc
Confidence            999999999999999988764

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.43  E-value=4.4e-12  Score=78.09  Aligned_cols=96  Identities=18%  Similarity=0.152  Sum_probs=64.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCccccc---H
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERVVG---K   77 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~   77 (112)
                      +.|.||||+.+|.......+..+|++++|+|+.....-+. ...+..+.+    .++| ++++.||+|+.......   .
T Consensus        67 i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~  141 (195)
T cd01884          67 YAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQT-REHLLLARQ----VGVPYIVVFLNKADMVDDEELLELVE  141 (195)
T ss_pred             EEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHH
Confidence            6799999999887766677889999999999876432221 222333333    4466 67889999986322211   1


Q ss_pred             HHHHHHHHHhC-----CcEEEeecCCCCCh
Q psy785           78 EQGASLARAFA-----CTFLETSAKAKVNS  102 (112)
Q Consensus        78 ~~~~~~~~~~~-----~~~~~~Sa~~~~~v  102 (112)
                      ++........+     .+++++||++|.|+
T Consensus       142 ~~i~~~l~~~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         142 MEVRELLSKYGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             HHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence            23334444433     58999999999875

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.42  E-value=1.2e-12  Score=84.87  Aligned_cols=85  Identities=20%  Similarity=0.085  Sum_probs=66.7

Q ss_pred             cccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCC
Q psy785           21 MKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK   99 (112)
Q Consensus        21 ~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~   99 (112)
                      +.++|.+++|+|+.++. ++..+..|+..+..    .++|+++|+||+|+.+...  ...........+++++++||+++
T Consensus        76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~~g  149 (287)
T cd01854          76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAKTG  149 (287)
T ss_pred             EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECCCC
Confidence            88999999999999887 88888888877654    4689999999999964321  12223334456889999999999


Q ss_pred             CChhHHhhhhcc
Q psy785          100 VNSWLCVECTND  111 (112)
Q Consensus       100 ~~v~~~~~~l~~  111 (112)
                      .|+++++..+..
T Consensus       150 ~gi~~L~~~L~~  161 (287)
T cd01854         150 EGLDELREYLKG  161 (287)
T ss_pred             ccHHHHHhhhcc
Confidence            999999887753

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK00098 GTPase RsgA; Reviewed

Probab=99.42  E-value=9.3e-13  Score=85.79  Aligned_cols=85  Identities=20%  Similarity=0.094  Sum_probs=64.0

Q ss_pred             ccCCEEEEEEeCCChhhHH-HHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCCC
Q psy785           22 KNGQGFILVYSITAQSTFN-DLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKV  100 (112)
Q Consensus        22 ~~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  100 (112)
                      .++|.+++|+|++++.+.. .+..|+..+..    .++|+++|+||+|+.+... ......+..+..+++++++||+++.
T Consensus        79 aniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g~  153 (298)
T PRK00098         79 ANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEGE  153 (298)
T ss_pred             ecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            8999999999998876544 34677766543    5689999999999963222 1223334455668899999999999


Q ss_pred             ChhHHhhhhcc
Q psy785          101 NSWLCVECTND  111 (112)
Q Consensus       101 ~v~~~~~~l~~  111 (112)
                      |++++++.+..
T Consensus       154 gi~~L~~~l~g  164 (298)
T PRK00098        154 GLDELKPLLAG  164 (298)
T ss_pred             cHHHHHhhccC
Confidence            99999987753

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.41  E-value=2.7e-12  Score=86.51  Aligned_cols=94  Identities=18%  Similarity=0.176  Sum_probs=61.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEeeCCCCCCccccc---H
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV-LVGNKCDLEEERVVG---K   77 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~~~~~~~~---~   77 (112)
                      +.||||||+++|......-..++|++++|+|+......+.. ..+..+..    .++|.+ +++||+|+.+.....   .
T Consensus        77 ~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~  151 (394)
T TIGR00485        77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVE  151 (394)
T ss_pred             EEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHH
Confidence            68999999998865555556788999999999863222221 22222332    357765 689999986532211   1


Q ss_pred             HHHHHHHHHhC-----CcEEEeecCCCC
Q psy785           78 EQGASLARAFA-----CTFLETSAKAKV  100 (112)
Q Consensus        78 ~~~~~~~~~~~-----~~~~~~Sa~~~~  100 (112)
                      .+...+.+..+     ++++++||++|.
T Consensus       152 ~~i~~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       152 MEVRELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HHHHHHHHhcCCCccCccEEECcccccc
Confidence            23445555554     689999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.41  E-value=4e-12  Score=80.25  Aligned_cols=47  Identities=32%  Similarity=0.164  Sum_probs=36.3

Q ss_pred             CcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           58 VPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        58 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +|+++|+||+|+.+     .++...++.  ...++++||++|.|++++++.+.+
T Consensus       177 ~p~iiV~NK~Dl~~-----~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~  223 (233)
T cd01896         177 IPCLYVYNKIDLIS-----IEELDLLAR--QPNSVVISAEKGLNLDELKERIWD  223 (233)
T ss_pred             eeEEEEEECccCCC-----HHHHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHH
Confidence            69999999999853     233333433  346899999999999999998864

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.40  E-value=4.8e-12  Score=86.49  Aligned_cols=105  Identities=14%  Similarity=0.106  Sum_probs=69.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc--HH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG--KE   78 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~   78 (112)
                      +.|+||||+++|......-+..+|++++|+|+.... .-+..+. +. +....  .-.|++++.||+|+.+.....  .+
T Consensus       119 i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~eh-l~-i~~~l--gi~~iIVvlNKiDlv~~~~~~~~~~  194 (460)
T PTZ00327        119 VSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEH-LA-AVEIM--KLKHIIILQNKIDLVKEAQAQDQYE  194 (460)
T ss_pred             EeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHH-HH-HHHHc--CCCcEEEEEecccccCHHHHHHHHH
Confidence            579999999998666556677999999999998631 1111122 22 22211  124688999999987422211  11


Q ss_pred             HHHHHHHH---hCCcEEEeecCCCCChhHHhhhhc
Q psy785           79 QGASLARA---FACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        79 ~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      +...+...   .+.+++++||++|.|++.+++.|.
T Consensus       195 ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~  229 (460)
T PTZ00327        195 EIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYIC  229 (460)
T ss_pred             HHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHH
Confidence            22222222   256999999999999999998876

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.39  E-value=2.3e-12  Score=87.96  Aligned_cols=98  Identities=15%  Similarity=0.101  Sum_probs=67.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHH-------HHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFN-------DLSDLREQILRVKDTDDVP-MVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~   73 (112)
                      +.++||||+++|.......+..+|++++|+|+++. +++       .....+..+..    .++| +++++||+|+.+..
T Consensus        87 i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~----~gi~~iIV~vNKmD~~~~~  161 (447)
T PLN00043         87 CTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT----LGVKQMICCCNKMDATTPK  161 (447)
T ss_pred             EEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH----cCCCcEEEEEEcccCCchh
Confidence            68999999999988888888999999999999862 222       22222222211    4565 68889999975211


Q ss_pred             ------cccHHHHHHHHHHhC-----CcEEEeecCCCCChhH
Q psy785           74 ------VVGKEQGASLARAFA-----CTFLETSAKAKVNSWL  104 (112)
Q Consensus        74 ------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~  104 (112)
                            ....+++..++++.+     ++++++||++|.|+.+
T Consensus       162 ~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        162 YSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence                  011334555666555     5799999999999854

>PRK09866 hypothetical protein; Provisional

Probab=99.39  E-value=1.7e-11  Score=85.87  Aligned_cols=108  Identities=20%  Similarity=0.257  Sum_probs=70.4

Q ss_pred             CceEEeCCCccc-----chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc
Q psy785            1 MLEILDTAGTEQ-----FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV   75 (112)
Q Consensus         1 ~~~i~Dt~g~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~   75 (112)
                      ++.|.||||...     ........+.++|++++|+|.+...+..+ ......+.+..  .+.|+++|+||+|..++...
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~--K~~PVILVVNKIDl~dreed  307 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG--QSVPLYVLVNKFDQQDRNSD  307 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC--CCCCEEEEEEcccCCCcccc
Confidence            367899999754     22233446899999999999987433322 12233333321  23599999999998643332


Q ss_pred             cHHHHHHHHHHh----C--C-cEEEeecCCCCChhHHhhhhcc
Q psy785           76 GKEQGASLARAF----A--C-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        76 ~~~~~~~~~~~~----~--~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..+....+....    +  + .++++||++|.|++++++.+..
T Consensus       308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            234444443211    2  3 7999999999999999988764

>PRK12736 elongation factor Tu; Reviewed

Probab=99.38  E-value=8.1e-12  Score=84.22  Aligned_cols=104  Identities=16%  Similarity=0.134  Sum_probs=67.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCccccc---H
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERVVG---K   77 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~   77 (112)
                      +.|+||||+++|......-+..+|++++|+|.+....-+. ...+..+..    .++| +++++||+|+.+.....   .
T Consensus        77 i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~  151 (394)
T PRK12736         77 YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQ----VGVPYLVVFLNKVDLVDDEELLELVE  151 (394)
T ss_pred             EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHH
Confidence            6799999999886655555678999999999876422222 222223333    3578 67889999986432221   1


Q ss_pred             HHHHHHHHHhC-----CcEEEeecCCCC--------ChhHHhhhhc
Q psy785           78 EQGASLARAFA-----CTFLETSAKAKV--------NSWLCVECTN  110 (112)
Q Consensus        78 ~~~~~~~~~~~-----~~~~~~Sa~~~~--------~v~~~~~~l~  110 (112)
                      .+...+....+     .+++++||++|.        ++.++++.+.
T Consensus       152 ~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~  197 (394)
T PRK12736        152 MEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVD  197 (394)
T ss_pred             HHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHH
Confidence            23344444444     489999999983        4666666553

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.38  E-value=5.6e-12  Score=85.26  Aligned_cols=99  Identities=20%  Similarity=0.064  Sum_probs=63.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc----H
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG----K   77 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~----~   77 (112)
                      +.||||||+++|......-+..+|++++|+|......-+....|. .+.. .  ...++++++||+|+.+.....    .
T Consensus        82 ~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~-~--~~~~iivviNK~D~~~~~~~~~~~i~  157 (406)
T TIGR02034        82 FIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASL-L--GIRHVVLAVNKMDLVDYDEEVFENIK  157 (406)
T ss_pred             EEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHH-c--CCCcEEEEEEecccccchHHHHHHHH
Confidence            679999999998665556678999999999987543222212221 1111 1  124688899999986422111    1


Q ss_pred             HHHHHHHHHhC---CcEEEeecCCCCChhH
Q psy785           78 EQGASLARAFA---CTFLETSAKAKVNSWL  104 (112)
Q Consensus        78 ~~~~~~~~~~~---~~~~~~Sa~~~~~v~~  104 (112)
                      ++...+.+..+   .+++++||++|.|+.+
T Consensus       158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            12222333334   4799999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.37  E-value=1.1e-11  Score=78.39  Aligned_cols=83  Identities=18%  Similarity=0.198  Sum_probs=59.2

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      ++.+|||||+.+|...+..+++.+|++++|+|.++.... ....++..+.+    .++|+++++||+|+....  ..+..
T Consensus        65 ~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~--~~~~~  137 (237)
T cd04168          65 KVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGAD--LEKVY  137 (237)
T ss_pred             EEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCC--HHHHH
Confidence            368999999999988888899999999999999876443 23344444433    468999999999986422  13334


Q ss_pred             HHHHHHhCCc
Q psy785           81 ASLARAFACT   90 (112)
Q Consensus        81 ~~~~~~~~~~   90 (112)
                      .++...++..
T Consensus       138 ~~i~~~~~~~  147 (237)
T cd04168         138 QEIKEKLSSD  147 (237)
T ss_pred             HHHHHHHCCC
Confidence            4454555543

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK12288 GTPase RsgA; Reviewed

Probab=99.37  E-value=4.6e-12  Score=83.98  Aligned_cols=87  Identities=13%  Similarity=0.043  Sum_probs=66.3

Q ss_pred             cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc-cHHHHHHHHHHhCCcEEEeecCCC
Q psy785           21 MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV-GKEQGASLARAFACTFLETSAKAK   99 (112)
Q Consensus        21 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~   99 (112)
                      ..|+|.+++|++.+.+.++..+..|+..+..    .++|+++|+||+|+.+.... ............+++++++||+++
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~----~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg  193 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET----LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTG  193 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            3679999999999888899999999875543    56899999999999643211 112222333456889999999999


Q ss_pred             CChhHHhhhhcc
Q psy785          100 VNSWLCVECTND  111 (112)
Q Consensus       100 ~~v~~~~~~l~~  111 (112)
                      .|++++++.+..
T Consensus       194 ~GideL~~~L~~  205 (347)
T PRK12288        194 EGLEELEAALTG  205 (347)
T ss_pred             cCHHHHHHHHhh
Confidence            999999998754

>COG1159 Era GTPase [General function prediction only]

Probab=99.37  E-value=1.1e-11  Score=79.48  Aligned_cols=105  Identities=20%  Similarity=0.138  Sum_probs=69.2

Q ss_pred             CceEEeCCCcccc--------hhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785            1 MLEILDTAGTEQF--------TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE   72 (112)
Q Consensus         1 ~~~i~Dt~g~~~~--------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~   72 (112)
                      ++-|.||||..+-        .......++++|++++|+|++.+..-.+ ...+..+..    .+.|++++.||+|...+
T Consensus        55 QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d-~~il~~lk~----~~~pvil~iNKID~~~~  129 (298)
T COG1159          55 QIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGD-EFILEQLKK----TKTPVILVVNKIDKVKP  129 (298)
T ss_pred             eEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccH-HHHHHHHhh----cCCCeEEEEEccccCCc
Confidence            3678999995532        2233445789999999999987432211 122333332    45799999999998765


Q ss_pred             ccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhc
Q psy785           73 RVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        73 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      .....+....+.....+ .++++||++|.|++.+.+.+.
T Consensus       130 ~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~  168 (298)
T COG1159         130 KTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIK  168 (298)
T ss_pred             HHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHH
Confidence            54212223333333344 899999999999999988764

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.36  E-value=5.3e-12  Score=86.75  Aligned_cols=101  Identities=21%  Similarity=0.051  Sum_probs=62.8

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHH--
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKE--   78 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~--   78 (112)
                      ++.||||||+++|......-++.+|++++|+|+.....-.....+.  +....  ...|+++++||+|+.+.......  
T Consensus       108 ~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~--l~~~l--g~~~iIvvvNKiD~~~~~~~~~~~i  183 (474)
T PRK05124        108 KFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF--IATLL--GIKHLVVAVNKMDLVDYSEEVFERI  183 (474)
T ss_pred             EEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH--HHHHh--CCCceEEEEEeeccccchhHHHHHH
Confidence            3679999999988654444579999999999987542211111111  11111  12478899999998642211111  


Q ss_pred             --HHHHHHHHhC----CcEEEeecCCCCChhHH
Q psy785           79 --QGASLARAFA----CTFLETSAKAKVNSWLC  105 (112)
Q Consensus        79 --~~~~~~~~~~----~~~~~~Sa~~~~~v~~~  105 (112)
                        +...+....+    .+++++||++|.|+.++
T Consensus       184 ~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        184 REDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence              1222233333    58999999999998764

>cd01855 YqeH YqeH

Probab=99.36  E-value=5.9e-12  Score=77.13  Aligned_cols=91  Identities=15%  Similarity=0.085  Sum_probs=62.6

Q ss_pred             chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHH-----HHh
Q psy785           13 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLA-----RAF   87 (112)
Q Consensus        13 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~   87 (112)
                      +..++..+++++|++++|+|++++..     .|...+...  ..++|+++|+||+|+.+... .......+.     +..
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~   95 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF--GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGL   95 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh--cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhc
Confidence            36677888999999999999987542     122223221  24689999999999864322 233333333     223


Q ss_pred             CC---cEEEeecCCCCChhHHhhhhcc
Q psy785           88 AC---TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        88 ~~---~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +.   +++++||++|.|++++++.+.+
T Consensus        96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~  122 (190)
T cd01855          96 GLKPKDVILISAKKGWGVEELINAIKK  122 (190)
T ss_pred             CCCcccEEEEECCCCCCHHHHHHHHHH
Confidence            33   6899999999999999998764

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd04169 RF3 RF3 subfamily

Probab=99.35  E-value=8.7e-12  Score=80.15  Aligned_cols=85  Identities=18%  Similarity=0.179  Sum_probs=56.3

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      ++++|||||+.+|.......++.+|++++|+|.++..... ...++....    ..++|+++++||+|+.....  ....
T Consensus        72 ~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~----~~~~P~iivvNK~D~~~a~~--~~~~  144 (267)
T cd04169          72 VINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCR----LRGIPIITFINKLDREGRDP--LELL  144 (267)
T ss_pred             EEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHH----hcCCCEEEEEECCccCCCCH--HHHH
Confidence            3789999999998877777889999999999997653222 223333222    25689999999999854221  2223


Q ss_pred             HHHHHHhCCcEE
Q psy785           81 ASLARAFACTFL   92 (112)
Q Consensus        81 ~~~~~~~~~~~~   92 (112)
                      .++...++.+.+
T Consensus       145 ~~l~~~l~~~~~  156 (267)
T cd04169         145 DEIEEELGIDCT  156 (267)
T ss_pred             HHHHHHHCCCce
Confidence            344444555433

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.34  E-value=2.7e-11  Score=81.47  Aligned_cols=104  Identities=22%  Similarity=0.171  Sum_probs=71.2

Q ss_pred             ceEEeCCCccc----------chh-hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQ----------FTA-MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~----------~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      +.+.||+|..+          |+. -....+..++.+++|+|.+.+.+-++. .....+.    ..+.+++++.||+|+.
T Consensus       228 ~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~----~~g~~~vIvvNKWDl~  302 (444)
T COG1160         228 YVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDL-RIAGLIE----EAGRGIVIVVNKWDLV  302 (444)
T ss_pred             EEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHH-HHHHHHH----HcCCCeEEEEEccccC
Confidence            67999999554          322 222347789999999999987665543 2223333    3678999999999987


Q ss_pred             CcccccHHHHHHHH-HHh---C-CcEEEeecCCCCChhHHhhhhc
Q psy785           71 EERVVGKEQGASLA-RAF---A-CTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        71 ~~~~~~~~~~~~~~-~~~---~-~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      +......++..... +.+   + .+.+++||++|.++.++|+.+.
T Consensus       303 ~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~  347 (444)
T COG1160         303 EEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIK  347 (444)
T ss_pred             CchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHH
Confidence            65333333333222 222   3 3899999999999999998764

>cd01859 MJ1464 MJ1464

Probab=99.33  E-value=7.3e-12  Score=74.47  Aligned_cols=90  Identities=17%  Similarity=0.167  Sum_probs=60.3

Q ss_pred             hhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEE
Q psy785           14 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLE   93 (112)
Q Consensus        14 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~   93 (112)
                      ..+.+...+++|++++|+|.+++..... ..+...+.    ..++|+++|+||+|+.+....  .....+....+.++++
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~----~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~   75 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL----ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVY   75 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH----hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEE
Confidence            4566777888999999999977543221 11211121    245899999999998532211  1121233345678999


Q ss_pred             eecCCCCChhHHhhhhc
Q psy785           94 TSAKAKVNSWLCVECTN  110 (112)
Q Consensus        94 ~Sa~~~~~v~~~~~~l~  110 (112)
                      +||+++.|++++++.+.
T Consensus        76 iSa~~~~gi~~L~~~l~   92 (156)
T cd01859          76 VSAKERLGTKILRRTIK   92 (156)
T ss_pred             EEccccccHHHHHHHHH
Confidence            99999999999998875

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.32  E-value=2.3e-11  Score=72.23  Aligned_cols=103  Identities=14%  Similarity=0.138  Sum_probs=65.6

Q ss_pred             ceEEeCCCcc----------cchhhHHhhcc---cCCEEEEEEeCCChhh--HHHHHHHHHHHHhhcCCCCCcEEEEeeC
Q psy785            2 LEILDTAGTE----------QFTAMRDLYMK---NGQGFILVYSITAQST--FNDLSDLREQILRVKDTDDVPMVLVGNK   66 (112)
Q Consensus         2 ~~i~Dt~g~~----------~~~~~~~~~~~---~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~p~ivv~nK   66 (112)
                      +.+|||||..          .+......++.   +++++++++|.....+  ...+..|+..       .+.|+++++||
T Consensus        47 ~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~-------~~~~vi~v~nK  119 (170)
T cd01876          47 FRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE-------LGIPFLVVLTK  119 (170)
T ss_pred             EEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHH-------cCCCEEEEEEc
Confidence            6789999943          34444444544   4678999999876532  2223344322       24799999999


Q ss_pred             CCCCCccccc--HHHHHHHHH--HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           67 CDLEEERVVG--KEQGASLAR--AFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        67 ~D~~~~~~~~--~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +|+.......  ........+  ....+++++||+++.|+.++++++.+
T Consensus       120 ~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~  168 (170)
T cd01876         120 ADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEK  168 (170)
T ss_pred             hhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHH
Confidence            9985432211  111222222  22358999999999999999998864

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK13351 elongation factor G; Reviewed

Probab=99.31  E-value=4.1e-11  Score=85.69  Aligned_cols=66  Identities=21%  Similarity=0.263  Sum_probs=53.2

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE   71 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~   71 (112)
                      ++++|||||+.+|...+..+++.+|++++|+|.++....+....|. .+..    .++|+++++||+|+..
T Consensus        74 ~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~----~~~p~iiviNK~D~~~  139 (687)
T PRK13351         74 RINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADR----YGIPRLIFINKMDRVG  139 (687)
T ss_pred             EEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHh----cCCCEEEEEECCCCCC
Confidence            3789999999999888899999999999999998876665544442 2332    4689999999999753

>KOG1489|consensus

Probab=99.31  E-value=5.3e-11  Score=76.99  Aligned_cols=107  Identities=21%  Similarity=0.238  Sum_probs=78.3

Q ss_pred             ceEEeCCCcccch-------hhHHhhcccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFT-------AMRDLYMKNGQGFILVYSITAQ---STFNDLSDLREQILRVKDT-DDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~-------~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~~   70 (112)
                      +.+-|.||.-+-.       .....+++.|+.+++|+|.+.+   .+++.+.....++..+... ...|.++|+||+|++
T Consensus       246 ~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~  325 (366)
T KOG1489|consen  246 ITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP  325 (366)
T ss_pred             eEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence            5677899844321       1233467899999999999998   8888888777777665443 678999999999985


Q ss_pred             CcccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           71 EERVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +..   ...+.++++...- .++++||++++|+.++...+-+
T Consensus       326 eae---~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  326 EAE---KNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE  364 (366)
T ss_pred             hHH---HHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence            311   1223556665543 4999999999999999887653

>PRK12735 elongation factor Tu; Reviewed

Probab=99.31  E-value=2.7e-11  Score=81.72  Aligned_cols=104  Identities=15%  Similarity=0.157  Sum_probs=66.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEeeCCCCCCccccc---H
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV-LVGNKCDLEEERVVG---K   77 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~~~~~~~~---~   77 (112)
                      +.|+||||+++|......-+.++|++++|+|+.....-+ ....+..+..    .++|.+ +++||+|+.+.....   .
T Consensus        77 i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~  151 (396)
T PRK12735         77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVE  151 (396)
T ss_pred             EEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHH
Confidence            679999999988665556677899999999997643222 1223333332    457866 579999986422211   1


Q ss_pred             HHHHHHHHHhC-----CcEEEeecCCCC----------ChhHHhhhhc
Q psy785           78 EQGASLARAFA-----CTFLETSAKAKV----------NSWLCVECTN  110 (112)
Q Consensus        78 ~~~~~~~~~~~-----~~~~~~Sa~~~~----------~v~~~~~~l~  110 (112)
                      .+...+...++     ++++++||++|.          ++..+++.+.
T Consensus       152 ~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~  199 (396)
T PRK12735        152 MEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVD  199 (396)
T ss_pred             HHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHH
Confidence            23344444443     579999999984          4566666553

>cd00066 G-alpha G protein alpha subunit

Probab=99.29  E-value=2.3e-11  Score=79.95  Aligned_cols=109  Identities=17%  Similarity=0.153  Sum_probs=77.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCCh----------hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQ----------STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~   71 (112)
                      +.+||++||...+..|..++.+++++++|+|.++.          ..+......+..+.....-.+.|+++++||.|+..
T Consensus       163 ~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~  242 (317)
T cd00066         163 FRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFE  242 (317)
T ss_pred             EEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHH
Confidence            67999999999999999999999999999999873          33444444555555544446799999999999632


Q ss_pred             c---------------c-cccHHHHHHHHHH----------hCCcEEEeecCCCCChhHHhhhhc
Q psy785           72 E---------------R-VVGKEQGASLARA----------FACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        72 ~---------------~-~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      +               . ..+.+.+..+...          ..+....++|.+..++..+|..+.
T Consensus       243 ~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~  307 (317)
T cd00066         243 EKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVK  307 (317)
T ss_pred             HhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHH
Confidence            1               0 2233344333322          123557789999999998887654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>KOG1707|consensus

Probab=99.27  E-value=2.2e-11  Score=83.84  Aligned_cols=108  Identities=23%  Similarity=0.266  Sum_probs=82.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCC-CCCcEEEEeeCCCCCCcccccHH-
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDL-SDLREQILRVKDT-DDVPMVLVGNKCDLEEERVVGKE-   78 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~-   78 (112)
                      ..+.||+..+.-....+.-++.||++.++|+++++.+++.+ ..|++.+.+.-+. .++|+|+||||.|.......+.+ 
T Consensus        58 t~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~  137 (625)
T KOG1707|consen   58 TSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEV  137 (625)
T ss_pred             eEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhH
Confidence            35788876555555567788999999999999999999988 4699999886654 57999999999998754433222 


Q ss_pred             HHHHHHHHhC-C-cEEEeecCCCCChhHHhhhh
Q psy785           79 QGASLARAFA-C-TFLETSAKAKVNSWLCVECT  109 (112)
Q Consensus        79 ~~~~~~~~~~-~-~~~~~Sa~~~~~v~~~~~~l  109 (112)
                      ....+..++. + ..++|||++..++.++|...
T Consensus       138 ~~~pim~~f~EiEtciecSA~~~~n~~e~fYya  170 (625)
T KOG1707|consen  138 NTLPIMIAFAEIETCIECSALTLANVSELFYYA  170 (625)
T ss_pred             HHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhh
Confidence            2344444443 3 68999999999999998643

>PRK13768 GTPase; Provisional

Probab=99.27  E-value=5.3e-11  Score=75.99  Aligned_cols=108  Identities=15%  Similarity=0.105  Sum_probs=66.1

Q ss_pred             ceEEeCCCcccch---hhHHhhcc---c--CCEEEEEEeCCChhhHHHH--HHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785            2 LEILDTAGTEQFT---AMRDLYMK---N--GQGFILVYSITAQSTFNDL--SDLREQILRVKDTDDVPMVLVGNKCDLEE   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~---~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~~p~ivv~nK~D~~~   71 (112)
                      +-+|||||+.+..   ..++.+++   +  ++++++++|........+.  ..|+.......  .++|+++|.||+|+.+
T Consensus        99 ~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~--~~~~~i~v~nK~D~~~  176 (253)
T PRK13768         99 YVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR--LGLPQIPVLNKADLLS  176 (253)
T ss_pred             EEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH--cCCCEEEEEEhHhhcC
Confidence            5699999987643   33333333   2  8999999999654322221  12322222111  4689999999999865


Q ss_pred             cccccH--HHHH------------------------HHHHHhC--CcEEEeecCCCCChhHHhhhhcc
Q psy785           72 ERVVGK--EQGA------------------------SLARAFA--CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        72 ~~~~~~--~~~~------------------------~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ......  ....                        +..+..+  .+++++||+++.|++++.+++.+
T Consensus       177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~  244 (253)
T PRK13768        177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQE  244 (253)
T ss_pred             chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHH
Confidence            332100  0000                        1122234  48899999999999999998753

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=99.26  E-value=3.3e-11  Score=80.41  Aligned_cols=93  Identities=19%  Similarity=0.182  Sum_probs=68.1

Q ss_pred             cccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHH----HHH
Q psy785           10 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGAS----LAR   85 (112)
Q Consensus        10 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~   85 (112)
                      .++|..+...++++++++++|+|+.+..     ..|...+.+..  .+.|+++|+||+|+.+. ........+    +++
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~--~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k  121 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV--GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAK  121 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh--CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHH
Confidence            4567778888889999999999987654     23555555543  35799999999998653 223333333    355


Q ss_pred             HhCC---cEEEeecCCCCChhHHhhhhc
Q psy785           86 AFAC---TFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        86 ~~~~---~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      +.++   .++++||++|.|++++++.+.
T Consensus       122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~  149 (360)
T TIGR03597       122 ELGLKPVDIILVSAKKGNGIDELLDKIK  149 (360)
T ss_pred             HcCCCcCcEEEecCCCCCCHHHHHHHHH
Confidence            5666   489999999999999999875

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.25  E-value=4.9e-11  Score=84.63  Aligned_cols=100  Identities=19%  Similarity=0.034  Sum_probs=63.0

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccH---
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGK---   77 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~---   77 (112)
                      ++.|+||||+++|......-+..+|++++|+|......-+....+ ..+...   ...|+++++||+|+.+......   
T Consensus       105 ~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~-~~~~~~---~~~~iivvvNK~D~~~~~~~~~~~i  180 (632)
T PRK05506        105 KFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHS-FIASLL---GIRHVVLAVNKMDLVDYDQEVFDEI  180 (632)
T ss_pred             eEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHH-HHHHHh---CCCeEEEEEEecccccchhHHHHHH
Confidence            367999999998865555567899999999998654321111111 112211   2257888999999864211101   


Q ss_pred             -HHHHHHHHHhCC---cEEEeecCCCCChhH
Q psy785           78 -EQGASLARAFAC---TFLETSAKAKVNSWL  104 (112)
Q Consensus        78 -~~~~~~~~~~~~---~~~~~Sa~~~~~v~~  104 (112)
                       .+..++.+..++   +++++||++|.|+.+
T Consensus       181 ~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        181 VADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence             122233344444   699999999999874

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.25  E-value=8e-11  Score=75.72  Aligned_cols=98  Identities=16%  Similarity=0.146  Sum_probs=65.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||||..++...+...++.+|++++|+|.+..........|. .+..    .++|.++++||+|.....  ......
T Consensus        66 i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~----~~~p~iivvNK~D~~~~~--~~~~~~  138 (268)
T cd04170          66 INLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADE----AGIPRIIFINKMDRERAD--FDKTLA  138 (268)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCEEEEEECCccCCCC--HHHHHH
Confidence            679999999988888888899999999999998765443333332 2222    468999999999986431  123334


Q ss_pred             HHHHHhCCcEEEe--ecCCCCChhHHh
Q psy785           82 SLARAFACTFLET--SAKAKVNSWLCV  106 (112)
Q Consensus        82 ~~~~~~~~~~~~~--Sa~~~~~v~~~~  106 (112)
                      .+...++.+++.+  ...++.++..+.
T Consensus       139 ~l~~~~~~~~~~~~ip~~~~~~~~~~v  165 (268)
T cd04170         139 ALQEAFGRPVVPLQLPIGEGDDFKGVV  165 (268)
T ss_pred             HHHHHhCCCeEEEEecccCCCceeEEE
Confidence            4444556554444  455555544333

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.23  E-value=7.7e-11  Score=75.88  Aligned_cols=92  Identities=18%  Similarity=0.194  Sum_probs=61.2

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      ++.+|||||+.++...+...++.+|++++|+|......-.. ...+..+..    .++|+++++||+|+.+...  ....
T Consensus        65 ~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~----~~~p~ivviNK~D~~~a~~--~~~~  137 (270)
T cd01886          65 RINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR----YNVPRIAFVNKMDRTGADF--FRVV  137 (270)
T ss_pred             EEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCCCCCCH--HHHH
Confidence            36799999999988888889999999999999976432222 122233332    5689999999999864221  1122


Q ss_pred             HHHHHHhCC----cEEEeecCCC
Q psy785           81 ASLARAFAC----TFLETSAKAK   99 (112)
Q Consensus        81 ~~~~~~~~~----~~~~~Sa~~~   99 (112)
                      .++...++.    ..+++|+..+
T Consensus       138 ~~l~~~l~~~~~~~~~Pisa~~~  160 (270)
T cd01886         138 EQIREKLGANPVPLQLPIGEEDD  160 (270)
T ss_pred             HHHHHHhCCCceEEEeccccCCC
Confidence            333333332    4678888755

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.23  E-value=6.8e-11  Score=82.18  Aligned_cols=66  Identities=21%  Similarity=0.258  Sum_probs=49.7

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE   71 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~   71 (112)
                      ++.+|||||+.+|.......++.+|++++|+|+++..... ...++...    ...++|+++++||+|+..
T Consensus        80 ~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~----~~~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         80 LINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVC----RLRDTPIFTFINKLDRDG  145 (526)
T ss_pred             EEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHH----HhcCCCEEEEEECCcccc
Confidence            3789999999999887777889999999999998643221 22333322    225799999999999864

>smart00275 G_alpha G protein alpha subunit

Probab=99.22  E-value=1.5e-10  Score=76.84  Aligned_cols=109  Identities=17%  Similarity=0.156  Sum_probs=76.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCCh----------hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQ----------STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~   71 (112)
                      +.+||.+||...+..|..++.+++++++|+|.++-          ..++.....+..+.......+.|+++++||.|+..
T Consensus       186 ~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~  265 (342)
T smart00275      186 FRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFE  265 (342)
T ss_pred             EEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHH
Confidence            68999999999999999999999999999999863          23444444556666544446799999999999742


Q ss_pred             c---------------ccccHHHHHHHHHH-----------hCCcEEEeecCCCCChhHHhhhhc
Q psy785           72 E---------------RVVGKEQGASLARA-----------FACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        72 ~---------------~~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      .               ...+.+.+..+...           ..+..+.+||.+-.++..+|..+.
T Consensus       266 ~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~  330 (342)
T smart00275      266 EKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVK  330 (342)
T ss_pred             HHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHH
Confidence            1               01122333333221           124557889999888888887653

Subunit of G proteins that contains the guanine nucleotide binding site

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.22  E-value=2.7e-10  Score=76.79  Aligned_cols=98  Identities=15%  Similarity=0.125  Sum_probs=67.9

Q ss_pred             ceEEeCCCcccch---------hhHHhhcccCCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFT---------AMRDLYMKNGQGFILVYSITAQS--TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~---------~~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      |.++||+|.+...         ......+..||+++||+|....-  .-+.+..|+.   +    .++|+++|+||+|..
T Consensus        53 f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr---~----~~kpviLvvNK~D~~  125 (444)
T COG1160          53 FILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILR---R----SKKPVILVVNKIDNL  125 (444)
T ss_pred             EEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH---h----cCCCEEEEEEcccCc
Confidence            6899999977422         12333577899999999986632  2233344432   2    458999999999975


Q ss_pred             CcccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           71 EERVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .     .+........+|+ +++.+||.-|.|+.++.+++++
T Consensus       126 ~-----~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~  162 (444)
T COG1160         126 K-----AEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLE  162 (444)
T ss_pred             h-----hhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHh
Confidence            2     1222222344677 8999999999999999998764

>KOG1145|consensus

Probab=99.22  E-value=3.4e-10  Score=77.84  Aligned_cols=98  Identities=24%  Similarity=0.267  Sum_probs=72.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKE   78 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~   78 (112)
                      +.|.||||+..|.+|+..=..-+|.+++|+...+   +.+.+.+.        +....+.|+++..||+|.++.   +++
T Consensus       203 iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIk--------hAk~A~VpiVvAinKiDkp~a---~pe  271 (683)
T KOG1145|consen  203 ITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIK--------HAKSANVPIVVAINKIDKPGA---NPE  271 (683)
T ss_pred             EEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHH--------HHHhcCCCEEEEEeccCCCCC---CHH
Confidence            6799999999999998877778899999998876   34444432        333468999999999997532   222


Q ss_pred             H-HHHH------HHHhC--CcEEEeecCCCCChhHHhhhhc
Q psy785           79 Q-GASL------ARAFA--CTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        79 ~-~~~~------~~~~~--~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      . .+++      ++.+|  .+++++||++|.|++.+-+.+.
T Consensus       272 kv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eail  312 (683)
T KOG1145|consen  272 KVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAIL  312 (683)
T ss_pred             HHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHH
Confidence            2 2222      23333  5899999999999999887764

>PRK12740 elongation factor G; Reviewed

Probab=99.21  E-value=2.5e-10  Score=81.57  Aligned_cols=64  Identities=22%  Similarity=0.271  Sum_probs=50.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      +.+|||||+.++...+...++.+|++++++|.+..........|. .+..    .++|+++++||+|..
T Consensus        62 i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~----~~~p~iiv~NK~D~~  125 (668)
T PRK12740         62 INLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWR-QAEK----YGVPRIIFVNKMDRA  125 (668)
T ss_pred             EEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHHH----cCCCEEEEEECCCCC
Confidence            689999999998887888899999999999998866554443332 2222    468999999999975

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.20  E-value=1.4e-10  Score=78.33  Aligned_cols=98  Identities=19%  Similarity=0.152  Sum_probs=67.6

Q ss_pred             ceEEeCCCcccchhhH--------HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQFTAMR--------DLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~--------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~   73 (112)
                      +++.||||.+......        ...++.||.+++|+|.+.+.+-.+... +.     ....++|+++|.||.|+....
T Consensus       267 v~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~-~~-----~~~~~~~~i~v~NK~DL~~~~  340 (454)
T COG0486         267 VRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLAL-IE-----LLPKKKPIIVVLNKADLVSKI  340 (454)
T ss_pred             EEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHH-HH-----hcccCCCEEEEEechhccccc
Confidence            6899999987654433        235789999999999998632222211 11     123568999999999997644


Q ss_pred             cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785           74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      ....     .....+.+++.+||++|.|++.+.+.+.
T Consensus       341 ~~~~-----~~~~~~~~~i~iSa~t~~Gl~~L~~~i~  372 (454)
T COG0486         341 ELES-----EKLANGDAIISISAKTGEGLDALREAIK  372 (454)
T ss_pred             ccch-----hhccCCCceEEEEecCccCHHHHHHHHH
Confidence            3211     1112245799999999999999988765

>KOG0077|consensus

Probab=99.18  E-value=2e-10  Score=68.05  Aligned_cols=109  Identities=14%  Similarity=0.167  Sum_probs=82.2

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      +++.+|.+|+..-...|+.|+..+|++++.+|+.+.+.+...+.-++.+.......+.|+++.+||+|.+..  .++++.
T Consensus        65 ~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a--~se~~l  142 (193)
T KOG0077|consen   65 TFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA--ASEDEL  142 (193)
T ss_pred             eEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc--ccHHHH
Confidence            467899999998888999999999999999999999888776665565555433478999999999998743  234333


Q ss_pred             HH------HHHHh--------C---CcEEEeecCCCCChhHHhhhhcc
Q psy785           81 AS------LARAF--------A---CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        81 ~~------~~~~~--------~---~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +-      .+...        +   +.++.||...+.+.-+.|.|+.+
T Consensus       143 ~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~q  190 (193)
T KOG0077|consen  143 RFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQ  190 (193)
T ss_pred             HHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhh
Confidence            22      11111        1   36788999999998899988754

>PRK00049 elongation factor Tu; Reviewed

Probab=99.18  E-value=5.4e-10  Score=75.52  Aligned_cols=104  Identities=15%  Similarity=0.161  Sum_probs=66.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEeeCCCCCCccccc---H
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV-LVGNKCDLEEERVVG---K   77 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~~~~~~~~---~   77 (112)
                      +.|.||||+.+|......-+..+|++++|+|......-+. ...+..+..    .++|.+ ++.||+|+.+.....   .
T Consensus        77 i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~  151 (396)
T PRK00049         77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVE  151 (396)
T ss_pred             EEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHH
Confidence            5799999999886656666789999999999876432222 223333333    457876 589999986422211   1


Q ss_pred             HHHHHHHHHh-----CCcEEEeecCCCC----------ChhHHhhhhc
Q psy785           78 EQGASLARAF-----ACTFLETSAKAKV----------NSWLCVECTN  110 (112)
Q Consensus        78 ~~~~~~~~~~-----~~~~~~~Sa~~~~----------~v~~~~~~l~  110 (112)
                      .+...+....     +.+++++||+++.          ++..+++.|.
T Consensus       152 ~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~  199 (396)
T PRK00049        152 MEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVD  199 (396)
T ss_pred             HHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHH
Confidence            1233333332     3589999999875          3456665553

>CHL00071 tufA elongation factor Tu

Probab=99.16  E-value=4.1e-10  Score=76.37  Aligned_cols=96  Identities=17%  Similarity=0.113  Sum_probs=63.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCccccc---H
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERVVG---K   77 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~   77 (112)
                      +.|.||||+.+|.......+..+|++++|+|+.....-+. ...+..+..    .++| ++++.||+|+.+.....   .
T Consensus        77 ~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~~~  151 (409)
T CHL00071         77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQ----VGVPNIVVFLNKEDQVDDEELLELVE  151 (409)
T ss_pred             EEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCEEEEEEEccCCCCHHHHHHHHH
Confidence            6799999999886656666789999999999876432222 222233332    4578 67899999987532211   1


Q ss_pred             HHHHHHHHHhC-----CcEEEeecCCCCCh
Q psy785           78 EQGASLARAFA-----CTFLETSAKAKVNS  102 (112)
Q Consensus        78 ~~~~~~~~~~~-----~~~~~~Sa~~~~~v  102 (112)
                      .++..+.+..+     ++++++||.+|.++
T Consensus       152 ~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        152 LEVRELLSKYDFPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             HHHHHHHHHhCCCCCcceEEEcchhhcccc
Confidence            23344444433     58999999998743

>PLN03126 Elongation factor Tu; Provisional

Probab=99.15  E-value=5.5e-10  Score=76.93  Aligned_cols=95  Identities=18%  Similarity=0.114  Sum_probs=62.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCccccc---H
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERVVG---K   77 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~   77 (112)
                      +.|+||||+++|......-+..+|++++|+|......-+. ..++..+..    .++| ++++.||+|+.+.....   .
T Consensus       146 i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~  220 (478)
T PLN03126        146 YAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVE  220 (478)
T ss_pred             EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHH
Confidence            6799999999986656666778999999999876533222 233333333    4578 77899999986532211   1


Q ss_pred             HHHHHHHHHh-----CCcEEEeecCCCCC
Q psy785           78 EQGASLARAF-----ACTFLETSAKAKVN  101 (112)
Q Consensus        78 ~~~~~~~~~~-----~~~~~~~Sa~~~~~  101 (112)
                      .+...+.+..     .++++++||.+|.+
T Consensus       221 ~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        221 LEVRELLSSYEFPGDDIPIISGSALLALE  249 (478)
T ss_pred             HHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence            2333444443     35899999998753

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.15  E-value=3.1e-10  Score=71.47  Aligned_cols=108  Identities=19%  Similarity=0.189  Sum_probs=68.3

Q ss_pred             CceEEeCCCcccchh-----hHHhhcccCCEEEEEEeCCChh---hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785            1 MLEILDTAGTEQFTA-----MRDLYMKNGQGFILVYSITAQS---TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE   72 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~-----~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~   72 (112)
                      .|++||+|||..+..     .....++++.++|+|+|+...+   .+..+...+..+.+..  ++..+-++.+|+|+..+
T Consensus        49 ~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s--p~~~v~vfiHK~D~l~~  126 (232)
T PF04670_consen   49 PLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYS--PNIKVFVFIHKMDLLSE  126 (232)
T ss_dssp             EEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHS--TT-EEEEEEE-CCCS-H
T ss_pred             EEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhC--CCCeEEEEEeecccCCH
Confidence            378999999986543     4566789999999999998544   3344444555555543  67889999999998643


Q ss_pred             cc--cc----HHHHHHHHHHhC---CcEEEeecCCCCChhHHhhhhcc
Q psy785           73 RV--VG----KEQGASLARAFA---CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        73 ~~--~~----~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..  ..    .+...+.+...+   +.++.||.-+ ..+.+.+-++++
T Consensus       127 ~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq  173 (232)
T PF04670_consen  127 DEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQ  173 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHH
Confidence            21  11    112223333445   6788888887 578887776654

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.14  E-value=6.6e-10  Score=76.08  Aligned_cols=98  Identities=18%  Similarity=0.089  Sum_probs=63.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh---h----HHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCC--
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS---T----FNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEE--   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s----~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~--   71 (112)
                      +.|+||||+++|......-+..+|++++|+|.+...   .    -+..+.|. .+..    .++| ++++.||+|...  
T Consensus        87 i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~----~gi~~iiv~vNKmD~~~~~  161 (446)
T PTZ00141         87 FTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFT----LGVKQMIVCINKMDDKTVN  161 (446)
T ss_pred             EEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHH----cCCCeEEEEEEccccccch
Confidence            689999999999776777788999999999987642   0    11222222 2222    4566 568999999531  


Q ss_pred             -c-cc--ccHHHHHHHHHHhC-----CcEEEeecCCCCChhH
Q psy785           72 -E-RV--VGKEQGASLARAFA-----CTFLETSAKAKVNSWL  104 (112)
Q Consensus        72 -~-~~--~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~  104 (112)
                       . ..  ...+++.......+     ++++++||.+|.|+.+
T Consensus       162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence             1 11  11222333333333     5799999999999864

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.13  E-value=7.6e-10  Score=79.34  Aligned_cols=93  Identities=18%  Similarity=0.162  Sum_probs=64.2

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      ++.+|||||+.++...+...++.+|++++|+|.++....+....| ..+..    .++|+++++||+|+....  .....
T Consensus        76 ~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~----~~~p~ivviNK~D~~~~~--~~~~~  148 (689)
T TIGR00484        76 RINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANR----YEVPRIAFVNKMDKTGAN--FLRVV  148 (689)
T ss_pred             EEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH----cCCCEEEEEECCCCCCCC--HHHHH
Confidence            478999999999887888889999999999999875444433223 22332    468999999999987422  12233


Q ss_pred             HHHHHHhCC----cEEEeecCCCC
Q psy785           81 ASLARAFAC----TFLETSAKAKV  100 (112)
Q Consensus        81 ~~~~~~~~~----~~~~~Sa~~~~  100 (112)
                      ..+...++.    ..+++|+..+.
T Consensus       149 ~~i~~~l~~~~~~~~ipis~~~~~  172 (689)
T TIGR00484       149 NQIKQRLGANAVPIQLPIGAEDNF  172 (689)
T ss_pred             HHHHHHhCCCceeEEeccccCCCc
Confidence            344444443    35777887763

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.12  E-value=7.4e-10  Score=72.41  Aligned_cols=110  Identities=15%  Similarity=0.128  Sum_probs=75.7

Q ss_pred             ceEEeCCCcccc-------hhhHHhhcccCCEEEEEEeCCChh---hHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQF-------TAMRDLYMKNGQGFILVYSITAQS---TFNDLSDLREQILRVKDT-DDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~-------~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~~   70 (112)
                      |.+-|.||.-.-       -.-...+++++.++++|+|++..+   ..+++.....++.++... .++|.++|+||+|+.
T Consensus       209 fv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~  288 (369)
T COG0536         209 FVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLP  288 (369)
T ss_pred             EEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCC
Confidence            456788874321       122344688999999999998654   577777777888777543 689999999999975


Q ss_pred             CcccccHHHHHHHHHHhCCcE-EEeecCCCCChhHHhhhhcc
Q psy785           71 EERVVGKEQGASLARAFACTF-LETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~-~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ...+........+.+..++.. +.+||.++.|++++...+.+
T Consensus       289 ~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~  330 (369)
T COG0536         289 LDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAE  330 (369)
T ss_pred             cCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHH
Confidence            433332333334444455532 22999999999999887653

>PLN03127 Elongation factor Tu; Provisional

Probab=99.09  E-value=1.9e-09  Score=73.79  Aligned_cols=104  Identities=16%  Similarity=0.116  Sum_probs=62.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCcccccH---
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERVVGK---   77 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~~~---   77 (112)
                      +.|.||||+++|......-...+|++++|+|......-+. ...+..+..    .++| ++++.||+|+.+......   
T Consensus       126 i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~----~gip~iIvviNKiDlv~~~~~~~~i~  200 (447)
T PLN03127        126 YAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ----VGVPSLVVFLNKVDVVDDEELLELVE  200 (447)
T ss_pred             EEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH----cCCCeEEEEEEeeccCCHHHHHHHHH
Confidence            6799999999886544455567999999999875432222 222222332    4578 468899999875322111   


Q ss_pred             HHHHHHHHHh-----CCcEEEeecC---CCCC-------hhHHhhhhc
Q psy785           78 EQGASLARAF-----ACTFLETSAK---AKVN-------SWLCVECTN  110 (112)
Q Consensus        78 ~~~~~~~~~~-----~~~~~~~Sa~---~~~~-------v~~~~~~l~  110 (112)
                      .+..++....     .++++++||.   +|.|       +.++++.+.
T Consensus       201 ~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~  248 (447)
T PLN03127        201 MELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVD  248 (447)
T ss_pred             HHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHH
Confidence            1222222222     2578888876   4444       556665543

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.09  E-value=1e-09  Score=66.63  Aligned_cols=71  Identities=25%  Similarity=0.477  Sum_probs=49.0

Q ss_pred             ceEEeCCCcccchh-hHHh--hcccCCEEEEEEeCCC-hhhHHHHHHHHHHHHhhcC--CCCCcEEEEeeCCCCCCc
Q psy785            2 LEILDTAGTEQFTA-MRDL--YMKNGQGFILVYSITA-QSTFNDLSDLREQILRVKD--TDDVPMVLVGNKCDLEEE   72 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~-~~~~--~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~~~~   72 (112)
                      +++.|+||+++.+. +...  +.+++.++|+|+|.+. +..+.....++-.+.....  ...+|+++++||.|+...
T Consensus        51 ~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   51 LRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             ECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             EEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            67999999998765 4443  5889999999999974 4456666665555554443  257899999999998653

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>TIGR00503 prfC peptide chain release factor 3

Probab=99.09  E-value=6.1e-10  Score=77.55  Aligned_cols=65  Identities=22%  Similarity=0.270  Sum_probs=48.2

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      ++.+|||||+.+|.......++.+|++++|+|.++...- ....++....    ..++|+++++||+|+.
T Consensus        81 ~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~----~~~~PiivviNKiD~~  145 (527)
T TIGR00503        81 LVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVET-RTRKLMEVTR----LRDTPIFTFMNKLDRD  145 (527)
T ss_pred             EEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCH-HHHHHHHHHH----hcCCCEEEEEECcccc
Confidence            368999999998887677788999999999999864211 1223333222    2568999999999985

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd01858 NGP_1 NGP-1

Probab=99.05  E-value=8.8e-10  Score=65.63  Aligned_cols=85  Identities=13%  Similarity=0.164  Sum_probs=54.1

Q ss_pred             hcccCCEEEEEEeCCChhh--HHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecC
Q psy785           20 YMKNGQGFILVYSITAQST--FNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK   97 (112)
Q Consensus        20 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~   97 (112)
                      .++++|.+++|+|..++..  ...+..+   +...  ..++|+++|.||+|+.+.... ......+.+.+....+.+||+
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~---l~~~--~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~   78 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEY---LKKE--KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASIN   78 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHH---HHhc--cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeecc
Confidence            4679999999999988632  2223232   2221  245899999999999642211 111222222222345789999


Q ss_pred             CCCChhHHhhhhc
Q psy785           98 AKVNSWLCVECTN  110 (112)
Q Consensus        98 ~~~~v~~~~~~l~  110 (112)
                      ++.|++++.+.+.
T Consensus        79 ~~~~~~~L~~~l~   91 (157)
T cd01858          79 NPFGKGSLIQLLR   91 (157)
T ss_pred             ccccHHHHHHHHH
Confidence            9999999888764

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.04  E-value=3e-09  Score=69.98  Aligned_cols=50  Identities=22%  Similarity=0.248  Sum_probs=34.8

Q ss_pred             CCcEEEEeeCCCCCCcccccHHHHHHHHHHh-CCcEEEeecCCCCChhHHhh-hhc
Q psy785           57 DVPMVLVGNKCDLEEERVVGKEQGASLARAF-ACTFLETSAKAKVNSWLCVE-CTN  110 (112)
Q Consensus        57 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~-~l~  110 (112)
                      .+|+++++||+|+.+...    ....+.... ..+++++||+.+.++.++.+ .+.
T Consensus       214 ~KPvI~VlNK~Dl~~~~~----~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~  265 (318)
T cd01899         214 SKPMVIAANKADIPDAEN----NISKLRLKYPDEIVVPTSAEAELALRRAAKQGLI  265 (318)
T ss_pred             CCcEEEEEEHHHccChHH----HHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHH
Confidence            479999999999753221    111222233 45899999999999999886 354

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=99.00  E-value=2.6e-09  Score=63.53  Aligned_cols=81  Identities=16%  Similarity=0.060  Sum_probs=51.9

Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCCCChhH
Q psy785           25 QGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWL  104 (112)
Q Consensus        25 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  104 (112)
                      |.+++|+|+.++.+...  .++..  ......++|+++|.||+|+.+.... ......+....+.+++.+||+++.|+++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~--~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~   75 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER--VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEK   75 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH--HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhh
Confidence            68999999988765432  23321  1111256899999999999642211 1111122223345789999999999999


Q ss_pred             Hhhhhc
Q psy785          105 CVECTN  110 (112)
Q Consensus       105 ~~~~l~  110 (112)
                      +.+.+.
T Consensus        76 L~~~i~   81 (155)
T cd01849          76 KESAFT   81 (155)
T ss_pred             HHHHHH
Confidence            998764

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.99  E-value=2.8e-09  Score=60.59  Aligned_cols=98  Identities=17%  Similarity=0.073  Sum_probs=69.5

Q ss_pred             EEeCCCcc----cchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHH
Q psy785            4 ILDTAGTE----QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQ   79 (112)
Q Consensus         4 i~Dt~g~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~   79 (112)
                      .+||||.-    +++.-......++|.+++|..+++++|--.     .   ........|+|-+++|.|+.+...  ...
T Consensus        41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~-----p---~f~~~~~k~vIgvVTK~DLaed~d--I~~  110 (148)
T COG4917          41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFP-----P---GFLDIGVKKVIGVVTKADLAEDAD--ISL  110 (148)
T ss_pred             ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCC-----c---ccccccccceEEEEecccccchHh--HHH
Confidence            47999843    333333345678999999999998864211     0   111124578999999999975333  445


Q ss_pred             HHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           80 GASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        80 ~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++|..+-|. ++|++|+.++.|+++++..|..
T Consensus       111 ~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~  143 (148)
T COG4917         111 VKRWLREAGAEPIFETSAVDNQGVEELVDYLAS  143 (148)
T ss_pred             HHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence            5677777776 8999999999999999998764

>COG2262 HflX GTPases [General function prediction only]

Probab=98.96  E-value=1.6e-08  Score=67.62  Aligned_cols=85  Identities=24%  Similarity=0.228  Sum_probs=59.4

Q ss_pred             cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCCC
Q psy785           21 MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKV  100 (112)
Q Consensus        21 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  100 (112)
                      ...+|.+++|+|.++|...+.+..-..-+ +..+...+|+++|.||+|+.++..    .......... ..+.+||++|.
T Consensus       269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL-~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~~  342 (411)
T COG2262         269 VKEADLLLHVVDASDPEILEKLEAVEDVL-AEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTGE  342 (411)
T ss_pred             hhcCCEEEEEeecCChhHHHHHHHHHHHH-HHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEeccCc
Confidence            45899999999999997666655433333 333446699999999999765332    1111111112 58999999999


Q ss_pred             ChhHHhhhhcc
Q psy785          101 NSWLCVECTND  111 (112)
Q Consensus       101 ~v~~~~~~l~~  111 (112)
                      |++.+.+.+.+
T Consensus       343 gl~~L~~~i~~  353 (411)
T COG2262         343 GLDLLRERIIE  353 (411)
T ss_pred             CHHHHHHHHHH
Confidence            99999988753

>cd01856 YlqF YlqF

Probab=98.96  E-value=3e-09  Score=64.25  Aligned_cols=90  Identities=14%  Similarity=0.042  Sum_probs=58.7

Q ss_pred             cchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcE
Q psy785           12 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTF   91 (112)
Q Consensus        12 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~   91 (112)
                      +........+.++|.+++|+|+..+...... .+...+      .+.|+++|.||+|+.+...  .....++.+..+.++
T Consensus         8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~------~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~v   78 (171)
T cd01856           8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL------GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKV   78 (171)
T ss_pred             HHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh------cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeE
Confidence            4444556678899999999999876432111 111111      3479999999999863221  111222223334578


Q ss_pred             EEeecCCCCChhHHhhhhc
Q psy785           92 LETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        92 ~~~Sa~~~~~v~~~~~~l~  110 (112)
                      +.+||+++.|++++.+.+.
T Consensus        79 i~iSa~~~~gi~~L~~~l~   97 (171)
T cd01856          79 LFVNAKSGKGVKKLLKAAK   97 (171)
T ss_pred             EEEECCCcccHHHHHHHHH
Confidence            9999999999999988765

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.96  E-value=5.9e-09  Score=61.08  Aligned_cols=77  Identities=17%  Similarity=0.108  Sum_probs=52.8

Q ss_pred             HhhcccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEee
Q psy785           18 DLYMKNGQGFILVYSITAQSTFN--DLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETS   95 (112)
Q Consensus        18 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S   95 (112)
                      ...++++|++++|+|+.++.+..  .+..|+...    . .++|++++.||+|+.++..  .....+..+..+.+++++|
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iS   78 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFS   78 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEE
Confidence            44678999999999998876433  334443322    1 4689999999999864322  2233444555677899999


Q ss_pred             cCCCCC
Q psy785           96 AKAKVN  101 (112)
Q Consensus        96 a~~~~~  101 (112)
                      |+++.+
T Consensus        79 a~~~~~   84 (141)
T cd01857          79 ALKENA   84 (141)
T ss_pred             ecCCCc
Confidence            998864

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=98.94  E-value=6.6e-09  Score=73.07  Aligned_cols=102  Identities=22%  Similarity=0.189  Sum_probs=73.3

Q ss_pred             ceEEeCCCcccchh------hHHhh-c-ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQFTA------MRDLY-M-KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~------~~~~~-~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~   73 (112)
                      +++.|.||.-....      ..+.+ . .++|+++-|+|.++-+.--.+   -.++.+    -++|++++.|++|..+++
T Consensus        52 i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLyl---tlQLlE----~g~p~ilaLNm~D~A~~~  124 (653)
T COG0370          52 IEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNLYL---TLQLLE----LGIPMILALNMIDEAKKR  124 (653)
T ss_pred             EEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHHHH---HHHHHH----cCCCeEEEeccHhhHHhc
Confidence            68999999554321      22233 3 467999999999986532111   122333    468999999999986544


Q ss_pred             cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+ .-+..++.+.+|+|++++||++|.|++++.+.+.+
T Consensus       125 Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~  161 (653)
T COG0370         125 GI-RIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIE  161 (653)
T ss_pred             CC-cccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHH
Confidence            43 34556777889999999999999999999988753

>PRK12739 elongation factor G; Reviewed

Probab=98.94  E-value=1.2e-08  Score=73.32  Aligned_cols=93  Identities=17%  Similarity=0.167  Sum_probs=61.7

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      ++.++||||+.+|...+...++.+|++++|+|......-+... .+..+.+    .++|.++++||+|+....  .....
T Consensus        74 ~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~-i~~~~~~----~~~p~iv~iNK~D~~~~~--~~~~~  146 (691)
T PRK12739         74 RINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSET-VWRQADK----YGVPRIVFVNKMDRIGAD--FFRSV  146 (691)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECCCCCCCC--HHHHH
Confidence            3689999999988777888899999999999997654333222 2222322    568999999999987422  12223


Q ss_pred             HHHHHHhCC----cEEEeecCCCC
Q psy785           81 ASLARAFAC----TFLETSAKAKV  100 (112)
Q Consensus        81 ~~~~~~~~~----~~~~~Sa~~~~  100 (112)
                      .++...++.    ..+++|+..+.
T Consensus       147 ~~i~~~l~~~~~~~~iPis~~~~f  170 (691)
T PRK12739        147 EQIKDRLGANAVPIQLPIGAEDDF  170 (691)
T ss_pred             HHHHHHhCCCceeEEecccccccc
Confidence            333333433    34567776654

>KOG1423|consensus

Probab=98.94  E-value=1.2e-08  Score=66.08  Aligned_cols=107  Identities=18%  Similarity=0.097  Sum_probs=65.5

Q ss_pred             CceEEeCCCcccchh------------hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785            1 MLEILDTAGTEQFTA------------MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD   68 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D   68 (112)
                      ++-|+||||.-.-..            ..+..+.+||++++|+|+++....-. -..+..+.++   ..+|-++|.||.|
T Consensus       121 Qlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y---s~ips~lvmnkid  196 (379)
T KOG1423|consen  121 QLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY---SKIPSILVMNKID  196 (379)
T ss_pred             EEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH---hcCCceeeccchh
Confidence            367999999432111            12224568999999999986322111 0122223333   4589999999999


Q ss_pred             CCCcc-------------cccHHHHHHHHHHh-------------CC----cEEEeecCCCCChhHHhhhhccC
Q psy785           69 LEEER-------------VVGKEQGASLARAF-------------AC----TFLETSAKAKVNSWLCVECTNDQ  112 (112)
Q Consensus        69 ~~~~~-------------~~~~~~~~~~~~~~-------------~~----~~~~~Sa~~~~~v~~~~~~l~~~  112 (112)
                      ....+             +++.. ..++.+++             |+    .+|.+||++|.||+++-++|..|
T Consensus       197 ~~k~k~~Ll~l~~~Lt~g~l~~~-kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsq  269 (379)
T KOG1423|consen  197 KLKQKRLLLNLKDLLTNGELAKL-KLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQ  269 (379)
T ss_pred             cchhhhHHhhhHHhccccccchh-hhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhc
Confidence            76432             12110 11222222             12    48999999999999999998764

>PRK01889 GTPase RsgA; Reviewed

Probab=98.93  E-value=1.1e-08  Score=68.37  Aligned_cols=83  Identities=18%  Similarity=0.114  Sum_probs=59.3

Q ss_pred             cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHH-HhCCcEEEeecCCC
Q psy785           21 MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLAR-AFACTFLETSAKAK   99 (112)
Q Consensus        21 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~   99 (112)
                      ..|+|.+++|++...+-+...+.+++..+..    .++|+++|.||+|+.+..   .+....+.. ..+++++.+|++++
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g  182 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDG  182 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCC
Confidence            5789999999999754455556666655544    568889999999997431   111222222 34679999999999


Q ss_pred             CChhHHhhhhc
Q psy785          100 VNSWLCVECTN  110 (112)
Q Consensus       100 ~~v~~~~~~l~  110 (112)
                      .|++++..++.
T Consensus       183 ~gl~~L~~~L~  193 (356)
T PRK01889        183 EGLDVLAAWLS  193 (356)
T ss_pred             ccHHHHHHHhh
Confidence            99999988764

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.93  E-value=1.3e-08  Score=65.88  Aligned_cols=97  Identities=18%  Similarity=0.037  Sum_probs=72.7

Q ss_pred             ccchhhHHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCC
Q psy785           11 EQFTAMRDLYMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFAC   89 (112)
Q Consensus        11 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~   89 (112)
                      ++.+.+.+.-+.+.|-.++++...+|+ +...+.+++-....    .++..+++.||+|+.++.....++........|+
T Consensus        67 ~Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~----~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy  142 (301)
T COG1162          67 PRKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA----GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGY  142 (301)
T ss_pred             cccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH----cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCe
Confidence            345566777777889999999988876 56666666544433    6788889999999986544332345556677899


Q ss_pred             cEEEeecCCCCChhHHhhhhcc
Q psy785           90 TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        90 ~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +++.+|++++.+++++...+..
T Consensus       143 ~v~~~s~~~~~~~~~l~~~l~~  164 (301)
T COG1162         143 PVLFVSAKNGDGLEELAELLAG  164 (301)
T ss_pred             eEEEecCcCcccHHHHHHHhcC
Confidence            9999999999999999887753

>KOG1144|consensus

Probab=98.92  E-value=5.1e-09  Score=74.45  Aligned_cols=102  Identities=22%  Similarity=0.160  Sum_probs=70.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE------   72 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~------   72 (112)
                      +-++||||++.|..++..-.+-||..|+|+|+..   +.+++++..    +..    .+.|+|+..||+|....      
T Consensus       542 ~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~l----LR~----rktpFivALNKiDRLYgwk~~p~  613 (1064)
T KOG1144|consen  542 LLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINL----LRM----RKTPFIVALNKIDRLYGWKSCPN  613 (1064)
T ss_pred             eEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHH----HHh----cCCCeEEeehhhhhhcccccCCC
Confidence            5689999999999988888889999999999865   345555432    222    56899999999995311      


Q ss_pred             ccc-------cHH-----------HHHHHHHH-hC-------------CcEEEeecCCCCChhHHhhhhcc
Q psy785           73 RVV-------GKE-----------QGASLARA-FA-------------CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        73 ~~~-------~~~-----------~~~~~~~~-~~-------------~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..+       ...           ...+++.. ++             +.++++||.+|.||-+++-+|++
T Consensus       614 ~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~  684 (1064)
T KOG1144|consen  614 APIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQ  684 (1064)
T ss_pred             chHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHH
Confidence            000       000           01111110 11             25789999999999999988875

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.92  E-value=1.9e-08  Score=62.07  Aligned_cols=102  Identities=13%  Similarity=0.023  Sum_probs=59.9

Q ss_pred             ceEEeCCCcccchh-----hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc--
Q psy785            2 LEILDTAGTEQFTA-----MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV--   74 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~-----~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~--   74 (112)
                      +.+|||||......     +....+.++|+++++.+. ....  .-..|+..+.+    .+.|+++|+||+|+..+..  
T Consensus        54 l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~-~~~~--~d~~~~~~l~~----~~~~~ilV~nK~D~~~~~~~~  126 (197)
T cd04104          54 VTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST-RFSS--NDVKLAKAIQC----MGKKFYFVRTKVDRDLSNEQR  126 (197)
T ss_pred             ceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC-CCCH--HHHHHHHHHHH----hCCCEEEEEecccchhhhhhc
Confidence            68999999754322     222236788999988542 2221  11345555554    3579999999999843111  


Q ss_pred             ---------ccHHHHHHHHHH-h---C---CcEEEeecC--CCCChhHHhhhhc
Q psy785           75 ---------VGKEQGASLARA-F---A---CTFLETSAK--AKVNSWLCVECTN  110 (112)
Q Consensus        75 ---------~~~~~~~~~~~~-~---~---~~~~~~Sa~--~~~~v~~~~~~l~  110 (112)
                               ...+..++.+.. .   +   .++|.+|+.  .+.|+..+.+.+.
T Consensus       127 ~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~  180 (197)
T cd04104         127 SKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLL  180 (197)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHH
Confidence                     011122222221 1   2   278999998  5688888877664

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.91  E-value=1.7e-08  Score=66.54  Aligned_cols=98  Identities=20%  Similarity=0.115  Sum_probs=64.9

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHH--HHHHHHhhcCCCCCcEEEEeeCCCCCCccccc--
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDTDDVPMVLVGNKCDLEEERVVG--   76 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~--~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~--   76 (112)
                      +|-+-||||++.|......=.+-||..|+++|.-.. -.+..++  ++..++.     -.-+++..||+|+.+-.+.-  
T Consensus        87 kFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTrRHs~I~sLLG-----IrhvvvAVNKmDLvdy~e~~F~  160 (431)
T COG2895          87 KFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTRRHSFIASLLG-----IRHVVVAVNKMDLVDYSEEVFE  160 (431)
T ss_pred             eEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhHHHHHHHHHhC-----CcEEEEEEeeecccccCHHHHH
Confidence            467899999999987666667789999999998322 2222221  2222222     24678888999997533211  


Q ss_pred             --HHHHHHHHHHhCC---cEEEeecCCCCChhH
Q psy785           77 --KEQGASLARAFAC---TFLETSAKAKVNSWL  104 (112)
Q Consensus        77 --~~~~~~~~~~~~~---~~~~~Sa~~~~~v~~  104 (112)
                        ..+...++..+++   .++++||..|.||-.
T Consensus       161 ~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         161 AIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             HHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence              2233446666665   789999999998753

>PRK13796 GTPase YqeH; Provisional

Probab=98.88  E-value=2.4e-08  Score=66.94  Aligned_cols=82  Identities=21%  Similarity=0.200  Sum_probs=56.4

Q ss_pred             cccCC-EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHH----HHHhCC---cEE
Q psy785           21 MKNGQ-GFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASL----ARAFAC---TFL   92 (112)
Q Consensus        21 ~~~~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~~~~~---~~~   92 (112)
                      +...+ .+++|+|+.+..     ..|...+.+..  .+.|+++|+||+|+.+. ........++    ++..++   .++
T Consensus        66 i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~--~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~g~~~~~v~  137 (365)
T PRK13796         66 IGDSDALVVNVVDIFDFN-----GSWIPGLHRFV--GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKELGLRPVDVV  137 (365)
T ss_pred             hcccCcEEEEEEECccCC-----CchhHHHHHHh--CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhcCCCcCcEE
Confidence            34445 899999987643     23455555543  35799999999999642 2223333333    445565   689


Q ss_pred             EeecCCCCChhHHhhhhc
Q psy785           93 ETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        93 ~~Sa~~~~~v~~~~~~l~  110 (112)
                      .+||+++.|++++++.+.
T Consensus       138 ~vSAk~g~gI~eL~~~I~  155 (365)
T PRK13796        138 LISAQKGHGIDELLEAIE  155 (365)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999999874

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.87  E-value=1.8e-08  Score=67.50  Aligned_cols=101  Identities=16%  Similarity=0.098  Sum_probs=63.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh---hH--HHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS---TF--NDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG   76 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~   76 (112)
                      |.|.|+||+.+|-...-.-.++||+.|+|+|+.+.+   .|  +...+--..+.+..  .-...|++.||+|+.+-.+.-
T Consensus        87 ~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl--Gi~~lIVavNKMD~v~wde~r  164 (428)
T COG5256          87 FTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL--GIKQLIVAVNKMDLVSWDEER  164 (428)
T ss_pred             EEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc--CCceEEEEEEcccccccCHHH
Confidence            689999999988766666678999999999998763   11  11111111122221  124678889999997522111


Q ss_pred             H----HHHHHHHHHhC-----CcEEEeecCCCCChhH
Q psy785           77 K----EQGASLARAFA-----CTFLETSAKAKVNSWL  104 (112)
Q Consensus        77 ~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~  104 (112)
                      .    .+...+.+..|     ++++++||.+|.|+.+
T Consensus       165 f~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         165 FEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             HHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            1    12222344444     4699999999998764

>PRK00007 elongation factor G; Reviewed

Probab=98.82  E-value=6e-08  Score=69.80  Aligned_cols=92  Identities=17%  Similarity=0.151  Sum_probs=62.0

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      ++.+.||||+.+|.......++.+|++++|+|....-..+....| ..+.+    .++|.++++||+|+.+..  .....
T Consensus        76 ~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~----~~~p~iv~vNK~D~~~~~--~~~~~  148 (693)
T PRK00007         76 RINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADK----YKVPRIAFVNKMDRTGAD--FYRVV  148 (693)
T ss_pred             EEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHH----cCCCEEEEEECCCCCCCC--HHHHH
Confidence            368999999998876667778899999999998765443333323 22333    468999999999987422  12333


Q ss_pred             HHHHHHhCC----cEEEeecCCC
Q psy785           81 ASLARAFAC----TFLETSAKAK   99 (112)
Q Consensus        81 ~~~~~~~~~----~~~~~Sa~~~   99 (112)
                      .++.+.++.    ..+++||.++
T Consensus       149 ~~i~~~l~~~~~~~~ipisa~~~  171 (693)
T PRK00007        149 EQIKDRLGANPVPIQLPIGAEDD  171 (693)
T ss_pred             HHHHHHhCCCeeeEEecCccCCc
Confidence            344444443    4567888776

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.81  E-value=2.6e-08  Score=64.47  Aligned_cols=87  Identities=17%  Similarity=0.094  Sum_probs=57.3

Q ss_pred             hhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEe
Q psy785           15 AMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLET   94 (112)
Q Consensus        15 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (112)
                      ......++.+|++++|+|+..+.+...  .++....     .+.|+++|.||+|+.+...  .....+..+..+.+++.+
T Consensus        13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~i   83 (276)
T TIGR03596        13 REIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAV--TKQWLKYFEEKGIKALAI   83 (276)
T ss_pred             HHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHH--HHHHHHHHHHcCCeEEEE
Confidence            345567889999999999976644322  1111111     2479999999999864221  112222223345688999


Q ss_pred             ecCCCCChhHHhhhhc
Q psy785           95 SAKAKVNSWLCVECTN  110 (112)
Q Consensus        95 Sa~~~~~v~~~~~~l~  110 (112)
                      ||+++.|+.++.+.+.
T Consensus        84 Sa~~~~gi~~L~~~i~   99 (276)
T TIGR03596        84 NAKKGKGVKKIIKAAK   99 (276)
T ss_pred             ECCCcccHHHHHHHHH
Confidence            9999999999877664

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=98.80  E-value=7.3e-08  Score=65.70  Aligned_cols=105  Identities=18%  Similarity=0.175  Sum_probs=70.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc--ccHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV--VGKEQ   79 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~   79 (112)
                      ++|.||||+-+|.--.+..++=+|++++++|..... .=..+.-++...+    .+.+.|+|.||+|.+..+.  +-.+.
T Consensus        70 INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~v  144 (603)
T COG1217          70 INIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEV  144 (603)
T ss_pred             EEEecCCCcCCccchhhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHH
Confidence            689999999999888888889999999999986532 1111222333333    5678899999999865332  11111


Q ss_pred             HHHHH------HHhCCcEEEeecCCCC----------ChhHHhhhhcc
Q psy785           80 GASLA------RAFACTFLETSAKAKV----------NSWLCVECTND  111 (112)
Q Consensus        80 ~~~~~------~~~~~~~~~~Sa~~~~----------~v~~~~~~l~~  111 (112)
                      ...+.      .++.+|++..||++|.          +...+|+.+++
T Consensus       145 fDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~  192 (603)
T COG1217         145 FDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILD  192 (603)
T ss_pred             HHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHH
Confidence            22222      2346899999999984          56666766653

>KOG0090|consensus

Probab=98.78  E-value=3.1e-07  Score=56.85  Aligned_cols=69  Identities=19%  Similarity=0.320  Sum_probs=49.2

Q ss_pred             ceEEeCCCcccchhhHHhhcc---cCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcC--CCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMK---NGQGFILVYSITAQ-STFNDLSDLREQILRVKD--TDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~---~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~~   70 (112)
                      .++.|.||+.+.+.....+++   ++-+++||+|.... ........++=.+.-..+  ...+|++++.||.|+.
T Consensus        84 ~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~  158 (238)
T KOG0090|consen   84 VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF  158 (238)
T ss_pred             eEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence            478999999998776666666   79999999998542 344444444444433332  3568999999999985

>TIGR00101 ureG urease accessory protein UreG

Probab=98.77  E-value=9e-08  Score=59.23  Aligned_cols=79  Identities=18%  Similarity=0.038  Sum_probs=52.0

Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHh--CCcEEEeecCCCCC
Q psy785           24 GQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAF--ACTFLETSAKAKVN  101 (112)
Q Consensus        24 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~  101 (112)
                      ++.++.|+|+.+.++...  .+...       -...-++++||+|+.+......+...+..+.+  +.+++++||++|.|
T Consensus       113 ~~~~i~vvD~~~~~~~~~--~~~~q-------i~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~g  183 (199)
T TIGR00101       113 ADLTIFVIDVAAGDKIPR--KGGPG-------ITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEG  183 (199)
T ss_pred             hCcEEEEEEcchhhhhhh--hhHhH-------hhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCC
Confidence            688999999987655321  11111       11233889999999742122233334444443  46999999999999


Q ss_pred             hhHHhhhhcc
Q psy785          102 SWLCVECTND  111 (112)
Q Consensus       102 v~~~~~~l~~  111 (112)
                      ++++|+++.+
T Consensus       184 i~el~~~i~~  193 (199)
T TIGR00101       184 LDTVIDWIEH  193 (199)
T ss_pred             HHHHHHHHHh
Confidence            9999999864

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.75  E-value=2.9e-08  Score=71.66  Aligned_cols=64  Identities=28%  Similarity=0.301  Sum_probs=47.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      +.+|||||+.+|.......++.+|++++|+|....-..+....|. .+.+    .++|+++++||+|..
T Consensus        88 i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~-~~~~----~~~p~ivviNKiD~~  151 (720)
T TIGR00490        88 INLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLR-QALK----ENVKPVLFINKVDRL  151 (720)
T ss_pred             EEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHH-HHHH----cCCCEEEEEEChhcc
Confidence            689999999999887888899999999999987643222222222 1222    457889999999975

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>COG0218 Predicted GTPase [General function prediction only]

Probab=98.74  E-value=1.8e-07  Score=57.40  Aligned_cols=104  Identities=18%  Similarity=0.202  Sum_probs=66.6

Q ss_pred             ceEEeCCC----------cccchhhHHhhcc---cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785            2 LEILDTAG----------TEQFTAMRDLYMK---NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD   68 (112)
Q Consensus         2 ~~i~Dt~g----------~~~~~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D   68 (112)
                      +.+.|.||          ++....+...|++   +..++++++|+-.+....+. ..+.-+.+    .++|+++++||+|
T Consensus        72 ~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~----~~i~~~vv~tK~D  146 (200)
T COG0218          72 LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE----LGIPVIVVLTKAD  146 (200)
T ss_pred             EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH----cCCCeEEEEEccc
Confidence            57899998          3444555556654   46889999998665433222 22222333    5799999999999


Q ss_pred             CCCcccccHHHHHHHHHHh----CCc--EEEeecCCCCChhHHhhhhcc
Q psy785           69 LEEERVVGKEQGASLARAF----ACT--FLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~----~~~--~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..+.... .......++..    ...  ++..|+.++.|++++...+.+
T Consensus       147 Ki~~~~~-~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~  194 (200)
T COG0218         147 KLKKSER-NKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILE  194 (200)
T ss_pred             cCChhHH-HHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHH
Confidence            8764332 12222333333    222  788899999999998877653

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.73  E-value=9.9e-09  Score=65.08  Aligned_cols=107  Identities=18%  Similarity=0.120  Sum_probs=54.1

Q ss_pred             ceEEeCCCcccchhhHHhhc--------ccCCEEEEEEeCCChhh-HHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785            2 LEILDTAGTEQFTAMRDLYM--------KNGQGFILVYSITAQST-FNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE   72 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~   72 (112)
                      +-++|||||.++...+...-        ...-++++++|.....+ ...+..++..+.... ..+.|.+.|.||+|+.+.
T Consensus        93 y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~-~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   93 YLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIML-RLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             EEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHH-HHTSEEEEEE--GGGS-H
T ss_pred             EEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHh-hCCCCEEEeeeccCcccc
Confidence            46899999998776555543        45678999999854322 222222222221111 035899999999999752


Q ss_pred             cc-------cc------------HHHHHHHHHH---hC-C-cEEEeecCCCCChhHHhhhh
Q psy785           73 RV-------VG------------KEQGASLARA---FA-C-TFLETSAKAKVNSWLCVECT  109 (112)
Q Consensus        73 ~~-------~~------------~~~~~~~~~~---~~-~-~~~~~Sa~~~~~v~~~~~~l  109 (112)
                      ..       ..            ....+.+++-   ++ . .++++|+.++.|+.+++..+
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~i  232 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAI  232 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHH
Confidence            10       00            0001111221   13 3 79999999999999998765

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.69  E-value=8.6e-08  Score=62.41  Aligned_cols=86  Identities=16%  Similarity=0.122  Sum_probs=57.1

Q ss_pred             hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEee
Q psy785           16 MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETS   95 (112)
Q Consensus        16 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S   95 (112)
                      .....++.+|++++|+|...+.+...  .++....     .+.|+++|.||+|+.+...  .+...++.++.+.+++.+|
T Consensus        17 ~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~vS   87 (287)
T PRK09563         17 EIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEV--TKKWIEYFEEQGIKALAIN   87 (287)
T ss_pred             HHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHH--HHHHHHHHHHcCCeEEEEE
Confidence            44556889999999999977644322  1122221     2579999999999853211  1122222334467889999


Q ss_pred             cCCCCChhHHhhhhc
Q psy785           96 AKAKVNSWLCVECTN  110 (112)
Q Consensus        96 a~~~~~v~~~~~~l~  110 (112)
                      |+++.|+.++.+.+.
T Consensus        88 a~~~~gi~~L~~~l~  102 (287)
T PRK09563         88 AKKGQGVKKILKAAK  102 (287)
T ss_pred             CCCcccHHHHHHHHH
Confidence            999999999887654

>COG1084 Predicted GTPase [General function prediction only]

Probab=98.67  E-value=1.5e-07  Score=61.55  Aligned_cols=103  Identities=18%  Similarity=0.184  Sum_probs=66.6

Q ss_pred             ceEEeCCCcccch-----hh---HHhhcc-cCCEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFT-----AM---RDLYMK-NGQGFILVYSITAQ--STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~-----~~---~~~~~~-~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      +|++||||.-+-.     .+   .-..++ =.++++|++|.+..  -+.+.....+.++...   ...|+++|.||+|+.
T Consensus       217 ~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~  293 (346)
T COG1084         217 IQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIA  293 (346)
T ss_pred             EEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEeccccc
Confidence            6899999944311     10   001122 25788999998754  3677777777777765   348999999999987


Q ss_pred             CcccccHHHHHHHHHHhC-CcEEEeecCCCCChhHHhhhh
Q psy785           71 EERVVGKEQGASLARAFA-CTFLETSAKAKVNSWLCVECT  109 (112)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l  109 (112)
                      .....  ++.......-+ .....+++..+.+++.+.+.+
T Consensus       294 ~~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v  331 (346)
T COG1084         294 DEEKL--EEIEASVLEEGGEEPLKISATKGCGLDKLREEV  331 (346)
T ss_pred             chhHH--HHHHHHHHhhccccccceeeeehhhHHHHHHHH
Confidence            53332  33333333334 357888999988888766543

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.67  E-value=9.2e-08  Score=59.45  Aligned_cols=55  Identities=20%  Similarity=0.077  Sum_probs=40.1

Q ss_pred             CCcEEEEeeCCCCCCcccccHHHHHHHHHHhC--CcEEEeecCCCCChhHHhhhhcc
Q psy785           57 DVPMVLVGNKCDLEEERVVGKEQGASLARAFA--CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        57 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..|.++++||+|+.+..........+..++.+  .+++++||++|.|++++++++.+
T Consensus       148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~  204 (207)
T TIGR00073       148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEG  204 (207)
T ss_pred             hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            46889999999996532222333444444433  69999999999999999999864

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG0082|consensus

Probab=98.64  E-value=4.2e-07  Score=60.31  Aligned_cols=110  Identities=20%  Similarity=0.162  Sum_probs=74.7

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhh----------HHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQST----------FNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      .++++|.+||..-..-|..++.++++++|+++++.-+.          +..-...+..+-.+.--.+.++|++.||.|+-
T Consensus       196 ~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLF  275 (354)
T KOG0082|consen  196 KFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLF  275 (354)
T ss_pred             ceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHH
Confidence            37899999999888889999999999999999876331          11112345555554434679999999999974


Q ss_pred             Ccc---------------cccHHHHHHHHHH-----h-----CCcEEEeecCCCCChhHHhhhhc
Q psy785           71 EER---------------VVGKEQGASLARA-----F-----ACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        71 ~~~---------------~~~~~~~~~~~~~-----~-----~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      +++               ....+++..+.+.     +     .+-...++|.+-.+|..+|..+.
T Consensus       276 eEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~  340 (354)
T KOG0082|consen  276 EEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVT  340 (354)
T ss_pred             HHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHH
Confidence            321               1122333332221     1     23456779999999999988764

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.62  E-value=4.4e-07  Score=60.13  Aligned_cols=98  Identities=17%  Similarity=0.131  Sum_probs=60.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc--cHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV--GKEQ   79 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~   79 (112)
                      +-|.||+|...-...   ...-+|.++++.+....+.+....   ..+.+      +.-++|+||+|+.+....  ...+
T Consensus       151 ~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E------~aDIiVVNKaDl~~~~~a~~~~~e  218 (332)
T PRK09435        151 VILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIME------LADLIVINKADGDNKTAARRAAAE  218 (332)
T ss_pred             EEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhh------hhheEEeehhcccchhHHHHHHHH
Confidence            468999996632222   356799999998754444443321   21222      344899999998653321  1111


Q ss_pred             HHHHHHH-------hCCcEEEeecCCCCChhHHhhhhcc
Q psy785           80 GASLARA-------FACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        80 ~~~~~~~-------~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .......       +..+++.+||+++.|++++++.+.+
T Consensus       219 l~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~  257 (332)
T PRK09435        219 YRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIED  257 (332)
T ss_pred             HHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            2221111       1248999999999999999988753

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.60  E-value=2.4e-07  Score=62.73  Aligned_cols=87  Identities=18%  Similarity=0.223  Sum_probs=61.0

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      ++++.||||+++|+.-.-..+..+|.++.|+|....-.-+.+     .+.+-+...++|++-+.||.|.....  +.+.+
T Consensus        82 ~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~-----KLfeVcrlR~iPI~TFiNKlDR~~rd--P~ELL  154 (528)
T COG4108          82 LVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL-----KLFEVCRLRDIPIFTFINKLDREGRD--PLELL  154 (528)
T ss_pred             EEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHH-----HHHHHHhhcCCceEEEeeccccccCC--hHHHH
Confidence            378999999999988666678899999999998764221211     23444455789999999999975433  24555


Q ss_pred             HHHHHHhCCcEEEe
Q psy785           81 ASLARAFACTFLET   94 (112)
Q Consensus        81 ~~~~~~~~~~~~~~   94 (112)
                      .++.+.+++...++
T Consensus       155 dEiE~~L~i~~~Pi  168 (528)
T COG4108         155 DEIEEELGIQCAPI  168 (528)
T ss_pred             HHHHHHhCcceecc
Confidence            66666676544433

>PRK09602 translation-associated GTPase; Reviewed

Probab=98.60  E-value=7.8e-07  Score=60.34  Aligned_cols=44  Identities=27%  Similarity=0.255  Sum_probs=30.2

Q ss_pred             CCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCCCChhH
Q psy785           57 DVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWL  104 (112)
Q Consensus        57 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  104 (112)
                      .+|+++|+||.|......    ....+.+..+..++++||+.+.++.+
T Consensus       217 ~KPvI~VlNK~D~~~~~~----~l~~i~~~~~~~vvpISA~~e~~l~~  260 (396)
T PRK09602        217 SKPMVIAANKADLPPAEE----NIERLKEEKYYIVVPTSAEAELALRR  260 (396)
T ss_pred             CCCEEEEEEchhcccchH----HHHHHHhcCCCcEEEEcchhhhhHHH
Confidence            489999999999753221    12222222234799999999999887

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.58  E-value=7.8e-07  Score=60.20  Aligned_cols=102  Identities=18%  Similarity=0.097  Sum_probs=69.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKE   78 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~   78 (112)
                      +.|.|.||.+++-...-.-+...|.++++++.++   +.+.+.+.     +.+.-  .-.-.++|.||+|..++..+ .+
T Consensus        52 ~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~-----iLdll--gi~~giivltk~D~~d~~r~-e~  123 (447)
T COG3276          52 MGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLL-----ILDLL--GIKNGIIVLTKADRVDEARI-EQ  123 (447)
T ss_pred             eEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHH-----HHHhc--CCCceEEEEeccccccHHHH-HH
Confidence            5799999999886655566778999999999954   33444332     12211  22345899999998764432 33


Q ss_pred             HHHHHHHHh---CCcEEEeecCCCCChhHHhhhhcc
Q psy785           79 QGASLARAF---ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        79 ~~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ...++....   ..+++.+|+++|.||+++...+.+
T Consensus       124 ~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~  159 (447)
T COG3276         124 KIKQILADLSLANAKIFKTSAKTGRGIEELKNELID  159 (447)
T ss_pred             HHHHHHhhcccccccccccccccCCCHHHHHHHHHH
Confidence            333333332   347899999999999999988764

>cd01850 CDC_Septin CDC/Septin

Probab=98.58  E-value=2.4e-07  Score=60.05  Aligned_cols=67  Identities=9%  Similarity=0.037  Sum_probs=39.8

Q ss_pred             cCCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc--ccHHHHHHHHHHhCCcEEEeec
Q psy785           23 NGQGFILVYSITAQS--TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV--VGKEQGASLARAFACTFLETSA   96 (112)
Q Consensus        23 ~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa   96 (112)
                      .+|+++++++.+...  ..+  ...++.+.     ..+|+++|+||+|+....+  ...+...+.+..++++++....
T Consensus       114 rvh~~ly~i~~~~~~l~~~D--~~~lk~l~-----~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~  184 (276)
T cd01850         114 RVHACLYFIEPTGHGLKPLD--IEFMKRLS-----KRVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPE  184 (276)
T ss_pred             ceEEEEEEEeCCCCCCCHHH--HHHHHHHh-----ccCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCC
Confidence            478888888876421  221  12222222     2589999999999865322  2234455566667777776554

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.57  E-value=1.7e-07  Score=61.31  Aligned_cols=100  Identities=22%  Similarity=0.265  Sum_probs=66.1

Q ss_pred             ceEEeCCCcccchhhHHhhccc---CCEEEEEEeCCChh----hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc
Q psy785            2 LEILDTAGTEQFTAMRDLYMKN---GQGFILVYSITAQS----TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV   74 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~---~d~~i~v~d~~~~~----s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~   74 (112)
                      +.|.|.||++-.-+   ..+++   .|+.++|+..+.+.    +-+.+.-     .+..  .-.-++++-||+|+..+..
T Consensus        88 VSfVDaPGHe~LMA---TMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~A-----leIi--gik~iiIvQNKIDlV~~E~  157 (415)
T COG5257          88 VSFVDAPGHETLMA---TMLSGAALMDGALLVIAANEPCPQPQTREHLMA-----LEII--GIKNIIIVQNKIDLVSRER  157 (415)
T ss_pred             EEEeeCCchHHHHH---HHhcchhhhcceEEEEecCCCCCCCchHHHHHH-----Hhhh--ccceEEEEecccceecHHH
Confidence            57899999886433   33444   49999999987653    3333211     1111  2256888999999986433


Q ss_pred             c--cHHHHHHHHHHh---CCcEEEeecCCCCChhHHhhhhcc
Q psy785           75 V--GKEQGASLARAF---ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        75 ~--~~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .  +.+++.+|.+.-   +.|++++||..+.|++-+++.+.+
T Consensus       158 AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~  199 (415)
T COG5257         158 ALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEK  199 (415)
T ss_pred             HHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHH
Confidence            2  123334444421   569999999999999999988754

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.57  E-value=1.9e-07  Score=68.54  Aligned_cols=64  Identities=22%  Similarity=0.290  Sum_probs=49.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      ++++||||+.+|.......++.+|++++|+|+...-......-|. .+..    .++|+++++||+|..
T Consensus       100 inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~-~~~~----~~~p~i~~iNK~D~~  163 (843)
T PLN00116        100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG----ERIRPVLTVNKMDRC  163 (843)
T ss_pred             EEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHH-HHHH----CCCCEEEEEECCccc
Confidence            579999999999887788889999999999988654333333332 2332    568999999999975

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.57  E-value=2.7e-07  Score=60.43  Aligned_cols=98  Identities=20%  Similarity=0.135  Sum_probs=58.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccH--HH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGK--EQ   79 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~   79 (112)
                      +-|.||+|.-...   ......+|.++++....   +.+.+......+      .++|.++++||+|+.+......  ..
T Consensus       129 ~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~~~~~  196 (300)
T TIGR00750       129 VIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGL------MEIADIYVVNKADGEGATNVTIARLM  196 (300)
T ss_pred             EEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHH------hhhccEEEEEcccccchhHHHHHHHH
Confidence            4688999844211   12456788888886543   333333333333      3478899999999864322110  00


Q ss_pred             ----HHHHHHH---hCCcEEEeecCCCCChhHHhhhhcc
Q psy785           80 ----GASLARA---FACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        80 ----~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                          ...+...   ++.+++++||+++.|++++++++.+
T Consensus       197 ~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~  235 (300)
T TIGR00750       197 LALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEE  235 (300)
T ss_pred             HHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHH
Confidence                0111111   1236899999999999999998754

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=98.56  E-value=1e-06  Score=57.78  Aligned_cols=47  Identities=34%  Similarity=0.187  Sum_probs=36.2

Q ss_pred             CcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           58 VPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        58 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +|.+.|.||+|+..     .++...+.+..  ..+++||..+.|++++.+.+.+
T Consensus       240 ~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~  286 (365)
T COG1163         240 KPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWD  286 (365)
T ss_pred             eeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHH
Confidence            79999999999864     23333333322  8899999999999999998764

>cd01882 BMS1 Bms1

Probab=98.53  E-value=2.5e-06  Score=53.80  Aligned_cols=91  Identities=12%  Similarity=0.059  Sum_probs=52.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEeeCCCCCCcccccH---
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV-LVGNKCDLEEERVVGK---   77 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~~~~~~~~~---   77 (112)
                      +.++||||..  ..+ ....+.+|++++++|.+........ ..+..+..    .+.|.+ +|.||+|+.+....-.   
T Consensus        85 i~~vDtPg~~--~~~-l~~ak~aDvVllviDa~~~~~~~~~-~i~~~l~~----~g~p~vi~VvnK~D~~~~~~~~~~~~  156 (225)
T cd01882          85 LTFIECPNDI--NAM-IDIAKVADLVLLLIDASFGFEMETF-EFLNILQV----HGFPRVMGVLTHLDLFKKNKTLRKTK  156 (225)
T ss_pred             EEEEeCCchH--HHH-HHHHHhcCEEEEEEecCcCCCHHHH-HHHHHHHH----cCCCeEEEEEeccccCCcHHHHHHHH
Confidence            5789999854  222 2346889999999998754332221 22222322    456754 5999999864221111   


Q ss_pred             HHHHH-HHHHh--CCcEEEeecCCCC
Q psy785           78 EQGAS-LARAF--ACTFLETSAKAKV  100 (112)
Q Consensus        78 ~~~~~-~~~~~--~~~~~~~Sa~~~~  100 (112)
                      +.++. +..+.  +.+++.+||+++.
T Consensus       157 ~~l~~~~~~~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         157 KRLKHRFWTEVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             HHHHHHHHHhhCCCCcEEEEeeccCC
Confidence            11222 22222  3489999999874

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.51  E-value=3e-07  Score=66.63  Aligned_cols=64  Identities=28%  Similarity=0.295  Sum_probs=47.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      +.|+||||+.+|.......++.+|++++|+|....-..+....|.. +.+    .++|+++++||+|..
T Consensus        89 i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~-~~~----~~~~~iv~iNK~D~~  152 (731)
T PRK07560         89 INLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQ-ALR----ERVKPVLFINKVDRL  152 (731)
T ss_pred             EEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHH-HHH----cCCCeEEEEECchhh
Confidence            5789999999998888888999999999999876533332233322 222    346889999999975

>KOG0458|consensus

Probab=98.51  E-value=4.5e-07  Score=63.07  Aligned_cols=101  Identities=17%  Similarity=0.162  Sum_probs=62.9

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh---hHH---HHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS---TFN---DLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV   74 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~   74 (112)
                      .+.+.|+||+..|....-.-...||+.++|+|++...   .|+   .++.. ..+.+..  .-...+++.||+|+.+=.+
T Consensus       256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEh-a~llr~L--gi~qlivaiNKmD~V~Wsq  332 (603)
T KOG0458|consen  256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREH-ALLLRSL--GISQLIVAINKMDLVSWSQ  332 (603)
T ss_pred             eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHH-HHHHHHc--CcceEEEEeecccccCccH
Confidence            3689999998888776666677899999999997642   221   11111 1222222  2356888999999974221


Q ss_pred             ccHHH----HHHHH-HHh-----CCcEEEeecCCCCChhH
Q psy785           75 VGKEQ----GASLA-RAF-----ACTFLETSAKAKVNSWL  104 (112)
Q Consensus        75 ~~~~~----~~~~~-~~~-----~~~~~~~Sa~~~~~v~~  104 (112)
                      --.++    +.-+. +..     .+.+++||+.+|.|+..
T Consensus       333 ~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k  372 (603)
T KOG0458|consen  333 DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK  372 (603)
T ss_pred             HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence            11122    22222 222     34799999999998754

>COG3596 Predicted GTPase [General function prediction only]

Probab=98.47  E-value=1.6e-06  Score=55.72  Aligned_cols=107  Identities=13%  Similarity=0.075  Sum_probs=68.5

Q ss_pred             ceEEeCCCccc-------chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc--
Q psy785            2 LEILDTAGTEQ-------FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE--   72 (112)
Q Consensus         2 ~~i~Dt~g~~~-------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~--   72 (112)
                      +.+|||||-++       +....+.++...|.++++.+..++.---+.. ++..+....  .+.|+++++|..|...+  
T Consensus        89 l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~-f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~  165 (296)
T COG3596          89 LVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDED-FLRDVIILG--LDKRVLFVVTQADRAEPGR  165 (296)
T ss_pred             eEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHH-HHHHHHHhc--cCceeEEEEehhhhhcccc
Confidence            68999999665       5556777788999999999998775222222 223333321  34899999999996432  


Q ss_pred             -----ccccHHHHHHH----HHHh------CCcEEEeecCCCCChhHHhhhhcc
Q psy785           73 -----RVVGKEQGASL----ARAF------ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        73 -----~~~~~~~~~~~----~~~~------~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                           ........+++    +...      --|++.+|+..+.|++++...+++
T Consensus       166 ~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~  219 (296)
T COG3596         166 EWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALIT  219 (296)
T ss_pred             ccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHH
Confidence                 01111111111    1111      238888889999999999988764

>KOG1490|consensus

Probab=98.46  E-value=1.2e-06  Score=60.36  Aligned_cols=103  Identities=12%  Similarity=0.088  Sum_probs=66.5

Q ss_pred             ceEEeCCCcccch----------h-hHHhhcccCCEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785            2 LEILDTAGTEQFT----------A-MRDLYMKNGQGFILVYSITAQ--STFNDLSDLREQILRVKDTDDVPMVLVGNKCD   68 (112)
Q Consensus         2 ~~i~Dt~g~~~~~----------~-~~~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D   68 (112)
                      .++.||||.-+..          + ..-.+++  .+++++.|.+..  .|....-..+..|...-  .+.|.|+|.||+|
T Consensus       217 wQViDTPGILD~plEdrN~IEmqsITALAHLr--aaVLYfmDLSe~CGySva~QvkLfhsIKpLF--aNK~~IlvlNK~D  292 (620)
T KOG1490|consen  217 WQVIDTPGILDRPEEDRNIIEMQIITALAHLR--SAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF--ANKVTILVLNKID  292 (620)
T ss_pred             eeecCCccccCcchhhhhHHHHHHHHHHHHhh--hhheeeeechhhhCCCHHHHHHHHHHhHHHh--cCCceEEEeeccc
Confidence            5789999954321          1 1112333  356666676554  46666666666665532  6799999999999


Q ss_pred             CCCcccccHHHHH---HHHHHhCCcEEEeecCCCCChhHHhhh
Q psy785           69 LEEERVVGKEQGA---SLARAFACTFLETSAKAKVNSWLCVEC  108 (112)
Q Consensus        69 ~~~~~~~~~~~~~---~~~~~~~~~~~~~Sa~~~~~v~~~~~~  108 (112)
                      +-....++.+...   .....-+++++++|+.+..||-++...
T Consensus       293 ~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~  335 (620)
T KOG1490|consen  293 AMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTT  335 (620)
T ss_pred             ccCccccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHH
Confidence            9765655544322   223333579999999999998876544

>PTZ00416 elongation factor 2; Provisional

Probab=98.45  E-value=5.2e-07  Score=66.23  Aligned_cols=64  Identities=20%  Similarity=0.302  Sum_probs=48.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      +.|.||||+.+|.......++.+|++++|+|....-..+...-| ..+.+    .++|++++.||+|+.
T Consensus        94 i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~----~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         94 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ----ERIRPVLFINKVDRA  157 (836)
T ss_pred             EEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH----cCCCEEEEEEChhhh
Confidence            67999999999987778888999999999998775333322223 33333    458999999999985

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=98.44  E-value=5e-07  Score=64.87  Aligned_cols=65  Identities=23%  Similarity=0.268  Sum_probs=51.0

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      .++++||||+-+|..-....++-+|+++.|+|....-..+...-|...     ...++|.+++.||+|..
T Consensus        77 ~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa-----~~~~vp~i~fiNKmDR~  141 (697)
T COG0480          77 RINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQA-----DKYGVPRILFVNKMDRL  141 (697)
T ss_pred             EEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHH-----hhcCCCeEEEEECcccc
Confidence            378999999999999999999999999999998765433333334322     23579999999999975

>KOG0468|consensus

Probab=98.36  E-value=7e-07  Score=63.37  Aligned_cols=64  Identities=27%  Similarity=0.444  Sum_probs=51.2

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL   69 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~   69 (112)
                      .+++.||||+..|..-....++-+|++++++|+...-.++.-+     +.++....+.|+++|.||+|.
T Consensus       198 l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr-----~ikhaiq~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  198 LMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER-----IIKHAIQNRLPIVVVINKVDR  261 (971)
T ss_pred             eeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHH-----HHHHHHhccCcEEEEEehhHH
Confidence            3789999999999888888899999999999998766554432     333333467999999999995

>KOG1707|consensus

Probab=98.33  E-value=2.6e-06  Score=59.45  Aligned_cols=85  Identities=19%  Similarity=0.190  Sum_probs=62.4

Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCC-cEEEeecCCCC
Q psy785           22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFAC-TFLETSAKAKV  100 (112)
Q Consensus        22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  100 (112)
                      ..||+++++||.+++.+++.+...+..-.   ....+|+++|++|+|+.+..+...-.-.+++.++++ +.+.+|.+...
T Consensus       494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~---~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~  570 (625)
T KOG1707|consen  494 AACDVACLVYDSSNPRSFEYLAEVYNKYF---DLYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLS  570 (625)
T ss_pred             ceeeeEEEecccCCchHHHHHHHHHHHhh---hccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCC
Confidence            57999999999999999988766443322   226799999999999976443222223789999998 56777777533


Q ss_pred             ChhHHhhhhc
Q psy785          101 NSWLCVECTN  110 (112)
Q Consensus       101 ~v~~~~~~l~  110 (112)
                      . .++|.+|.
T Consensus       571 s-~~lf~kL~  579 (625)
T KOG1707|consen  571 S-NELFIKLA  579 (625)
T ss_pred             C-chHHHHHH
Confidence            4 77887765

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.32  E-value=1.4e-06  Score=59.06  Aligned_cols=109  Identities=17%  Similarity=0.131  Sum_probs=74.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh----------hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS----------TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~   71 (112)
                      +.++|.+||...+.-|..++.+++++++|++++.-+          .+..-...+..+.....-.+.|++++.||.|+-.
T Consensus       238 ~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f~  317 (389)
T PF00503_consen  238 FRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDLFE  317 (389)
T ss_dssp             EEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHHH
T ss_pred             cceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHHHH
Confidence            689999999988999999999999999999975421          2333334455555544446799999999999621


Q ss_pred             -----cc-----------c--ccHHHHHHHHHHh------------CCcEEEeecCCCCChhHHhhhhc
Q psy785           72 -----ER-----------V--VGKEQGASLARAF------------ACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        72 -----~~-----------~--~~~~~~~~~~~~~------------~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                           ..           .  -+.+.+..+....            .+.+..++|.+..++..+|..+.
T Consensus       318 ~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~  386 (389)
T PF00503_consen  318 EKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVK  386 (389)
T ss_dssp             HHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHH
T ss_pred             HHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhc
Confidence                 11           1  2334444443321            12456889999889998888764

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG1532|consensus

Probab=98.29  E-value=3.9e-05  Score=49.67  Aligned_cols=106  Identities=18%  Similarity=0.140  Sum_probs=61.9

Q ss_pred             ceEEeCCCccc-chh------hHHhh-cccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQ-FTA------MRDLY-MKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~-~~~------~~~~~-~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      ..++|||||-. |..      +...+ -....++++++|...   +.+|-+=.-+--.+...   ...|.+++.||.|+.
T Consensus       118 ~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~Dv~  194 (366)
T KOG1532|consen  118 YVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKTDVS  194 (366)
T ss_pred             EEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEeccccc
Confidence            35899999764 221      22222 235678888888743   34443222222223221   568999999999987


Q ss_pred             Ccccc-----cHHHHHH------------HHH-------H--hCCcEEEeecCCCCChhHHhhhhc
Q psy785           71 EERVV-----GKEQGAS------------LAR-------A--FACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        71 ~~~~~-----~~~~~~~------------~~~-------~--~~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      ...-.     +.+..++            +.+       +  .++..+.+||.+|.|.+++|..+-
T Consensus       195 d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~  260 (366)
T KOG1532|consen  195 DSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVD  260 (366)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHH
Confidence            53210     0011111            001       1  146889999999999999998754

>KOG0461|consensus

Probab=98.28  E-value=7.2e-06  Score=54.55  Aligned_cols=101  Identities=17%  Similarity=0.148  Sum_probs=59.1

Q ss_pred             CceEEeCCCcccchhhHHhhccc---CCEEEEEEeCCChhhHHHHHH-HHHHHHhhcCCCCCcEEEEeeCCCCCCcccc-
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKN---GQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLEEERVV-   75 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~-   75 (112)
                      ++.+.|+||+..   +++..+.+   .|..++++|+.....-+...- .+.++..      ...++|.||+|..++.+. 
T Consensus        71 q~tlvDCPGHas---LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c------~klvvvinkid~lpE~qr~  141 (522)
T KOG0461|consen   71 QFTLVDCPGHAS---LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC------KKLVVVINKIDVLPENQRA  141 (522)
T ss_pred             eeEEEeCCCcHH---HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc------cceEEEEeccccccchhhh
Confidence            368999999765   44555544   488899999865432222111 2222322      467888999998654221 


Q ss_pred             -cHHH-HHHHHHHh-------CCcEEEeecCCC----CChhHHhhhhc
Q psy785           76 -GKEQ-GASLARAF-------ACTFLETSAKAK----VNSWLCVECTN  110 (112)
Q Consensus        76 -~~~~-~~~~~~~~-------~~~~~~~Sa~~~----~~v~~~~~~l~  110 (112)
                       ..++ ..+..+.+       +.|++++||+.|    .++.++.+.+-
T Consensus       142 ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~  189 (522)
T KOG0461|consen  142 SKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALE  189 (522)
T ss_pred             hHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHH
Confidence             1112 22222222       259999999999    56666665543

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=98.26  E-value=7.9e-06  Score=46.21  Aligned_cols=76  Identities=24%  Similarity=0.291  Sum_probs=54.0

Q ss_pred             HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeec
Q psy785           17 RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSA   96 (112)
Q Consensus        17 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa   96 (112)
                      ...+++.+++++++++.+...+++.+  |...+.... ..+.|.++++||.|+.+......+.        +.+++++|+
T Consensus        40 ~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~-k~dl~~~~~~nk~dl~~~~~~~~~~--------~~~~~~~s~  108 (124)
T smart00010       40 DPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGN-KSDLPILVGGNRDVLEEERQVATEE--------GLEFAETSA  108 (124)
T ss_pred             cccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcC-CCCCcEEEEeechhhHhhCcCCHHH--------HHHHHHHhC
Confidence            34567889999999999999998765  777765533 3468899999999985433333322        224566788


Q ss_pred             CCCCChh
Q psy785           97 KAKVNSW  103 (112)
Q Consensus        97 ~~~~~v~  103 (112)
                      ++|.|+.
T Consensus       109 ~~~~~~~  115 (124)
T smart00010      109 KTPEEGE  115 (124)
T ss_pred             CCcchhh
Confidence            8888874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG3886|consensus

Probab=98.20  E-value=7.5e-06  Score=51.61  Aligned_cols=68  Identities=24%  Similarity=0.379  Sum_probs=47.1

Q ss_pred             ceEEeCCCcccchh-----hHHhhcccCCEEEEEEeCCChhhHHHH---HHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785            2 LEILDTAGTEQFTA-----MRDLYMKNGQGFILVYSITAQSTFNDL---SDLREQILRVKDTDDVPMVLVGNKCDLEE   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~-----~~~~~~~~~d~~i~v~d~~~~~s~~~~---~~~~~~i~~~~~~~~~p~ivv~nK~D~~~   71 (112)
                      +.+||++||+.+-.     .....+++.++++++||++..+-..++   ..-++.+.++.  +.-.+.....|+|+..
T Consensus        55 LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~S--P~AkiF~l~hKmDLv~  130 (295)
T KOG3886|consen   55 LNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNS--PEAKIFCLLHKMDLVQ  130 (295)
T ss_pred             eehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcC--CcceEEEEEeechhcc
Confidence            67899999996432     333458899999999999876533333   33344455543  4566777889999975

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=98.20  E-value=1.5e-05  Score=45.01  Aligned_cols=58  Identities=21%  Similarity=0.314  Sum_probs=37.3

Q ss_pred             ceEEeCCCcccc----------hhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeC
Q psy785            2 LEILDTAGTEQF----------TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNK   66 (112)
Q Consensus         2 ~~i~Dt~g~~~~----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK   66 (112)
                      +.++||||....          ....+ .+..+|++++|+|.+++.. +.....+..+.     ...|+++|.||
T Consensus        49 ~~~vDtpG~~~~~~~~~~~~~~~~~~~-~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~-----~~~~~i~v~NK  116 (116)
T PF01926_consen   49 FILVDTPGINDGESQDNDGKEIRKFLE-QISKSDLIIYVVDASNPIT-EDDKNILRELK-----NKKPIILVLNK  116 (116)
T ss_dssp             EEEEESSSCSSSSHHHHHHHHHHHHHH-HHCTESEEEEEEETTSHSH-HHHHHHHHHHH-----TTSEEEEEEES
T ss_pred             EEEEeCCCCcccchhhHHHHHHHHHHH-HHHHCCEEEEEEECCCCCC-HHHHHHHHHHh-----cCCCEEEEEcC
Confidence            579999996431          12222 3478999999999877422 22223333331     56899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=98.14  E-value=4.2e-05  Score=47.12  Aligned_cols=107  Identities=12%  Similarity=0.083  Sum_probs=59.5

Q ss_pred             ceEEeCCCcccch--------hhH---HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCCC
Q psy785            2 LEILDTAGTEQFT--------AMR---DLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVPMVLVGNKCDL   69 (112)
Q Consensus         2 ~~i~Dt~g~~~~~--------~~~---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~   69 (112)
                      +.++||||..+..        .+.   .....++|++++|++..+. +-+. ...+..+.+.-+. .-.+++++.|+.|.
T Consensus        51 i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~-t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~  128 (196)
T cd01852          51 VNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRF-TEEE-EQAVETLQELFGEKVLDHTIVLFTRGDD  128 (196)
T ss_pred             EEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCc-CHHH-HHHHHHHHHHhChHhHhcEEEEEECccc
Confidence            6899999955431        111   1234689999999998762 2111 1223333332221 23588899999986


Q ss_pred             CCcccc------cHHHHHHHHHHhCCcEEEee-----cCCCCChhHHhhhhc
Q psy785           70 EEERVV------GKEQGASLARAFACTFLETS-----AKAKVNSWLCVECTN  110 (112)
Q Consensus        70 ~~~~~~------~~~~~~~~~~~~~~~~~~~S-----a~~~~~v~~~~~~l~  110 (112)
                      ......      .....+...+..+-.++..+     +..+.++.++++.+.
T Consensus       129 l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~  180 (196)
T cd01852         129 LEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVE  180 (196)
T ss_pred             cCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHH
Confidence            543211      11233444444444454444     455678888887764

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=98.14  E-value=2e-05  Score=38.93  Aligned_cols=44  Identities=18%  Similarity=0.296  Sum_probs=28.5

Q ss_pred             cCCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785           23 NGQGFILVYSITAQS--TFNDLSDLREQILRVKDTDDVPMVLVGNKCD   68 (112)
Q Consensus        23 ~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D   68 (112)
                      =.+++++++|++...  +++.....+.+++..-  .++|+++|.||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence            358899999997653  6777767777776642  4799999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG1191|consensus

Probab=98.10  E-value=4.8e-06  Score=57.25  Aligned_cols=109  Identities=17%  Similarity=0.102  Sum_probs=63.8

Q ss_pred             ceEEeCCCccc-chh--------hHHhhcccCCEEEEEEeC--CChhhHHHHHHHHHHHHhhcC-----CCCCcEEEEee
Q psy785            2 LEILDTAGTEQ-FTA--------MRDLYMKNGQGFILVYSI--TAQSTFNDLSDLREQILRVKD-----TDDVPMVLVGN   65 (112)
Q Consensus         2 ~~i~Dt~g~~~-~~~--------~~~~~~~~~d~~i~v~d~--~~~~s~~~~~~~~~~i~~~~~-----~~~~p~ivv~n   65 (112)
                      +.+.||||..+ ...        ..+..++.+|++++|+|+  +.-.+-..+.+.+.....-..     ....|.+++.|
T Consensus       318 v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~n  397 (531)
T KOG1191|consen  318 VRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVAN  397 (531)
T ss_pred             EEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEec
Confidence            67899999765 221        223347789999999998  333333333333333222110     12378999999


Q ss_pred             CCCCCCc-ccccHHHHHHHHHHh---CC-cEEEeecCCCCChhHHhhhhcc
Q psy785           66 KCDLEEE-RVVGKEQGASLARAF---AC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        66 K~D~~~~-~~~~~~~~~~~~~~~---~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      |.|+... ++... ....+....   .+ .+.++|+++++|++.+...+.+
T Consensus       398 k~D~~s~~~~~~~-~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~  447 (531)
T KOG1191|consen  398 KSDLVSKIPEMTK-IPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLN  447 (531)
T ss_pred             hhhccCccccccC-CceeccccccCcccceEEEeeechhhhHHHHHHHHHH
Confidence            9998754 22111 011111111   23 4556999999999998877643

>KOG3905|consensus

Probab=98.09  E-value=0.00017  Score=47.91  Aligned_cols=54  Identities=20%  Similarity=0.263  Sum_probs=41.9

Q ss_pred             CCcEEEEeeCCCCC----Cccc-------ccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785           57 DVPMVLVGNKCDLE----EERV-------VGKEQGASLARAFACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        57 ~~p~ivv~nK~D~~----~~~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      ++|+++|++|+|..    .+.+       .....++++|-.+|..++.+|++...|++-+.+.++
T Consensus       222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYiv  286 (473)
T KOG3905|consen  222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIV  286 (473)
T ss_pred             CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHH
Confidence            48999999999973    1111       123346778888999999999999999998877765

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=98.07  E-value=1.3e-05  Score=47.87  Aligned_cols=62  Identities=24%  Similarity=0.353  Sum_probs=42.8

Q ss_pred             ceEEeCCCccc----chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCC
Q psy785            2 LEILDTAGTEQ----FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKC   67 (112)
Q Consensus         2 ~~i~Dt~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~   67 (112)
                      +.|+||||...    ...++..++..+|++++|.+.++..+-.....+......    .....++|.||+
T Consensus       103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~----~~~~~i~V~nk~  168 (168)
T PF00350_consen  103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP----DKSRTIFVLNKA  168 (168)
T ss_dssp             EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT----TCSSEEEEEE-G
T ss_pred             eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC----CCCeEEEEEcCC
Confidence            67999999643    235777888999999999999886554444444333332    334588888984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.06  E-value=0.00012  Score=49.54  Aligned_cols=103  Identities=20%  Similarity=0.151  Sum_probs=62.9

Q ss_pred             ceEEeCCCcccc-hh-hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc--H
Q psy785            2 LEILDTAGTEQF-TA-MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG--K   77 (112)
Q Consensus         2 ~~i~Dt~g~~~~-~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~--~   77 (112)
                      +.|.||.|+|.| +. ++...-...|-.++++-.++.-+.- .+.-+.-+..    -..|++++.+|+|+.++....  .
T Consensus       203 VsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~a----~~lPviVvvTK~D~~~ddr~~~v~  277 (527)
T COG5258         203 VSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIALA----MELPVIVVVTKIDMVPDDRFQGVV  277 (527)
T ss_pred             EEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhhh----hcCCEEEEEEecccCcHHHHHHHH
Confidence            578999999987 33 3344455789999999887654321 1111222222    468999999999987532110  0


Q ss_pred             HHHH----------------------HHH-HHh-C-CcEEEeecCCCCChhHHhhhh
Q psy785           78 EQGA----------------------SLA-RAF-A-CTFLETSAKAKVNSWLCVECT  109 (112)
Q Consensus        78 ~~~~----------------------~~~-~~~-~-~~~~~~Sa~~~~~v~~~~~~l  109 (112)
                      ++..                      ..+ +.. + .|++.+|+.+|.|++-+.+.+
T Consensus       278 ~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f  334 (527)
T COG5258         278 EEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF  334 (527)
T ss_pred             HHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence            0100                      011 111 1 389999999999987665543

>smart00053 DYNc Dynamin, GTPase

Probab=98.04  E-value=5.3e-05  Score=48.29  Aligned_cols=67  Identities=16%  Similarity=0.184  Sum_probs=41.2

Q ss_pred             CceEEeCCCccc-------------chhhHHhhccc-CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeC
Q psy785            1 MLEILDTAGTEQ-------------FTAMRDLYMKN-GQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNK   66 (112)
Q Consensus         1 ~~~i~Dt~g~~~-------------~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK   66 (112)
                      .|.+.||||...             ...+...++++ .+.+++|+|.+..-.-.........+.    ..+.|+++|+||
T Consensus       126 ~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld----~~~~rti~ViTK  201 (240)
T smart00053      126 NLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD----PQGERTIGVITK  201 (240)
T ss_pred             ceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH----HcCCcEEEEEEC
Confidence            378999999642             12345557774 458888998754322111112222222    256899999999


Q ss_pred             CCCCC
Q psy785           67 CDLEE   71 (112)
Q Consensus        67 ~D~~~   71 (112)
                      .|..+
T Consensus       202 ~D~~~  206 (240)
T smart00053      202 LDLMD  206 (240)
T ss_pred             CCCCC
Confidence            99865

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG0099|consensus

Probab=97.97  E-value=1.5e-05  Score=51.27  Aligned_cols=69  Identities=16%  Similarity=0.201  Sum_probs=51.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCCh----------hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQ----------STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      |+.+|.+||.+-+..|-.++.++.++++|+..+.-          ..+......++.+++..-...+.+|++.||.|+.
T Consensus       204 FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDll  282 (379)
T KOG0099|consen  204 FHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL  282 (379)
T ss_pred             eeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHHH
Confidence            68899999999999999999999999999987542          1222223345555554434568899999999974

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.94  E-value=1.9e-05  Score=51.46  Aligned_cols=56  Identities=16%  Similarity=0.024  Sum_probs=40.1

Q ss_pred             CCCcEEEEeeCCCCCCcccccHHHHHHHHHHh--CCcEEEeecCCCCChhHHhhhhcc
Q psy785           56 DDVPMVLVGNKCDLEEERVVGKEQGASLARAF--ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        56 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ...+-+++.||+|+.+......+...+..+..  ..+++++||++|.|++++.++|.+
T Consensus       229 f~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~  286 (290)
T PRK10463        229 FAAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLET  286 (290)
T ss_pred             hhcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34678999999999642222233333334433  458999999999999999999865

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.91  E-value=0.00045  Score=41.85  Aligned_cols=81  Identities=23%  Similarity=0.188  Sum_probs=55.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +-++|||+...  ......+..+|.+++++..+. .+...+..+.+.+.+    .+.|+.+|.||.|....   ...+..
T Consensus        95 ~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~----~~~~~~vV~N~~~~~~~---~~~~~~  164 (179)
T cd03110          95 LIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRH----FGIPVGVVINKYDLNDE---IAEEIE  164 (179)
T ss_pred             EEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHH----cCCCEEEEEeCCCCCcc---hHHHHH
Confidence            56899996542  233455688999999999874 456666666665554    34678899999996432   244566


Q ss_pred             HHHHHhCCcEE
Q psy785           82 SLARAFACTFL   92 (112)
Q Consensus        82 ~~~~~~~~~~~   92 (112)
                      ++.++.+++++
T Consensus       165 ~~~~~~~~~vl  175 (179)
T cd03110         165 DYCEEEGIPIL  175 (179)
T ss_pred             HHHHHcCCCeE
Confidence            67777787765

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=97.90  E-value=2.7e-05  Score=47.81  Aligned_cols=53  Identities=21%  Similarity=0.019  Sum_probs=41.8

Q ss_pred             cEEEEeeCCCCCCcccccHHHHHHHHHHh--CCcEEEeecCCCCChhHHhhhhcc
Q psy785           59 PMVLVGNKCDLEEERVVGKEQGASLARAF--ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        59 p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      -=++|+||.|+.+.-..+.+...+-+++.  +.+++++|+++|.|++++.+++..
T Consensus       144 aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~  198 (202)
T COG0378         144 ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEP  198 (202)
T ss_pred             eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHh
Confidence            45788999999765555566666666665  459999999999999999998754

>KOG0466|consensus

Probab=97.88  E-value=2.5e-05  Score=51.28  Aligned_cols=101  Identities=19%  Similarity=0.214  Sum_probs=62.8

Q ss_pred             CceEEeCCCcccchhhHHhhccc---CCEEEEEEeCCC----hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKN---GQGFILVYSITA----QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~---~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~   73 (112)
                      ++.|.|+||++-.-+   ..+.+   .|+.++++-.+.    |.+-+.+..  -++.+     -+.++++-||+|+..+.
T Consensus       126 HVSfVDCPGHDiLMa---TMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM~-----LkhiiilQNKiDli~e~  195 (466)
T KOG0466|consen  126 HVSFVDCPGHDILMA---TMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIMK-----LKHIIILQNKIDLIKES  195 (466)
T ss_pred             EEEeccCCchHHHHH---HHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHhh-----hceEEEEechhhhhhHH
Confidence            467899999885432   22333   366666665433    334444322  12332     25788899999997654


Q ss_pred             cccH--HHHHHHHHHh---CCcEEEeecCCCCChhHHhhhhcc
Q psy785           74 VVGK--EQGASLARAF---ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 ~~~~--~~~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +..+  +..+.+.+.-   +.|++++||.-++|++.+.+.++.
T Consensus       196 ~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivk  238 (466)
T KOG0466|consen  196 QALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVK  238 (466)
T ss_pred             HHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHh
Confidence            4322  2233444432   569999999999999999988764

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=97.82  E-value=0.00045  Score=48.10  Aligned_cols=109  Identities=15%  Similarity=0.169  Sum_probs=73.4

Q ss_pred             ceEEeCCCcccchhhHHhhccc----CCEEEEEEeCCChhh-HHHHHHHHHHHHhhc-----------------------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKN----GQGFILVYSITAQST-FNDLSDLREQILRVK-----------------------   53 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~----~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~-----------------------   53 (112)
                      +.+|-..|...+..+....+..    --.+++|+|.+.|.. ++.+..|+.-+.++.                       
T Consensus        75 l~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~  154 (472)
T PF05783_consen   75 LNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQE  154 (472)
T ss_pred             eeEEEcCCCcchHhHhcccCCcccccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence            5788888766666666554432    367889999999864 345666654442221                       


Q ss_pred             -------C------------------------C-------CCCcEEEEeeCCCCCC----cc-------cccHHHHHHHH
Q psy785           54 -------D------------------------T-------DDVPMVLVGNKCDLEE----ER-------VVGKEQGASLA   84 (112)
Q Consensus        54 -------~------------------------~-------~~~p~ivv~nK~D~~~----~~-------~~~~~~~~~~~   84 (112)
                             .                        .       -++|++||++|+|...    +.       ....+.++.+|
T Consensus       155 Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~c  234 (472)
T PF05783_consen  155 YVEPGDSSDSGSPNRRSPSSSSSDDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFC  234 (472)
T ss_pred             hhhccccccccCcccccccccccccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHH
Confidence                   0                        0       1379999999999632    11       12234467788


Q ss_pred             HHhCCcEEEeecCCCCChhHHhhhhc
Q psy785           85 RAFACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        85 ~~~~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      -.+|..++.||++...+++.+.+.+.
T Consensus       235 L~yGAsL~yts~~~~~n~~~L~~yi~  260 (472)
T PF05783_consen  235 LKYGASLIYTSVKEEKNLDLLYKYIL  260 (472)
T ss_pred             HhcCCeEEEeeccccccHHHHHHHHH
Confidence            88899999999999999987776653

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=97.79  E-value=0.00077  Score=46.34  Aligned_cols=85  Identities=9%  Similarity=0.078  Sum_probs=55.0

Q ss_pred             hhcc-cCCEEEEEE-eCC-----ChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcE
Q psy785           19 LYMK-NGQGFILVY-SIT-----AQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTF   91 (112)
Q Consensus        19 ~~~~-~~d~~i~v~-d~~-----~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~   91 (112)
                      ..+. .++..++|. |.+     .....+.-.+|+.++++    .++|++++.||.|-..+.  ......++..+++.++
T Consensus       139 kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~----~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpv  212 (492)
T TIGR02836       139 KVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKE----LNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPV  212 (492)
T ss_pred             HHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHh----cCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCce
Confidence            3445 788888888 663     11233334567777776    579999999999933212  2334445666788898


Q ss_pred             EEeecCCC--CChhHHhhhh
Q psy785           92 LETSAKAK--VNSWLCVECT  109 (112)
Q Consensus        92 ~~~Sa~~~--~~v~~~~~~l  109 (112)
                      +.+|+.+-  ..|..+++.+
T Consensus       213 l~v~c~~l~~~DI~~il~~v  232 (492)
T TIGR02836       213 LAMDVESMRESDILSVLEEV  232 (492)
T ss_pred             EEEEHHHcCHHHHHHHHHHH
Confidence            88888653  3566666554

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PTZ00258 GTP-binding protein; Provisional

Probab=97.76  E-value=0.00056  Score=46.56  Aligned_cols=44  Identities=14%  Similarity=0.059  Sum_probs=29.4

Q ss_pred             CCcEEEEeeCC--CCCCcccccHHHHHHHHHHh-CCcEEEeecCCCC
Q psy785           57 DVPMVLVGNKC--DLEEERVVGKEQGASLARAF-ACTFLETSAKAKV  100 (112)
Q Consensus        57 ~~p~ivv~nK~--D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~  100 (112)
                      .+|+++++|+.  |+........+...+++... +.+++.+||+...
T Consensus       220 ~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~~sa~~E~  266 (390)
T PTZ00258        220 AKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIPYSAEFEE  266 (390)
T ss_pred             cCCEEEEEECchhhhcccchHHHHHHHHHHHhcCCCeEEEeeHHHHH
Confidence            48999999999  76221222344555666666 4789999986543

>KOG1143|consensus

Probab=97.63  E-value=0.00033  Score=47.38  Aligned_cols=103  Identities=16%  Similarity=0.164  Sum_probs=62.7

Q ss_pred             CceEEeCCCcccchhhHHhhcc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc----
Q psy785            1 MLEILDTAGTEQFTAMRDLYMK--NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV----   74 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~----   74 (112)
                      .+.|+|.+|+.+|....-.-+.  -.+..+++++....-.+. .+.-+..+..    -++|+.++.+|+|+..+..    
T Consensus       250 lvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~A----L~iPfFvlvtK~Dl~~~~~~~~t  324 (591)
T KOG1143|consen  250 LVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAA----LNIPFFVLVTKMDLVDRQGLKKT  324 (591)
T ss_pred             eEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHH----hCCCeEEEEEeeccccchhHHHH
Confidence            3679999999998653332222  367888888876543321 1222333443    4589999999999865311    


Q ss_pred             --------------------ccHHHHHHHHHHh---C-CcEEEeecCCCCChhHHhhh
Q psy785           75 --------------------VGKEQGASLARAF---A-CTFLETSAKAKVNSWLCVEC  108 (112)
Q Consensus        75 --------------------~~~~~~~~~~~~~---~-~~~~~~Sa~~~~~v~~~~~~  108 (112)
                                          .+..++...+++.   + .|+|.+|+.+|+|++-+...
T Consensus       325 v~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f  382 (591)
T KOG1143|consen  325 VKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF  382 (591)
T ss_pred             HHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence                                1122222222221   2 48999999999998755443

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=97.59  E-value=0.0004  Score=45.56  Aligned_cols=89  Identities=20%  Similarity=0.224  Sum_probs=56.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh---hHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCccccc-
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS---TFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERVVG-   76 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~~-   76 (112)
                      .-..|+||+.+|-...-.-..+.|+.|+|+..++..   +-+.+   +  +.+   .-+.| ++++.||+|+.++++.. 
T Consensus        77 yahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi---L--lar---qvGvp~ivvflnK~Dmvdd~elle  148 (394)
T COG0050          77 YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI---L--LAR---QVGVPYIVVFLNKVDMVDDEELLE  148 (394)
T ss_pred             EEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh---h--hhh---hcCCcEEEEEEecccccCcHHHHH
Confidence            346799999998654444456789999999988743   33332   1  111   14565 56678999998755432 


Q ss_pred             --HHHHHHHHHHhCC-----cEEEeecCC
Q psy785           77 --KEQGASLARAFAC-----TFLETSAKA   98 (112)
Q Consensus        77 --~~~~~~~~~~~~~-----~~~~~Sa~~   98 (112)
                        ..+.+++..++++     |++.-||..
T Consensus       149 lVemEvreLLs~y~f~gd~~Pii~gSal~  177 (394)
T COG0050         149 LVEMEVRELLSEYGFPGDDTPIIRGSALK  177 (394)
T ss_pred             HHHHHHHHHHHHcCCCCCCcceeechhhh
Confidence              2234556667764     677667654

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=97.55  E-value=0.0011  Score=43.86  Aligned_cols=70  Identities=16%  Similarity=0.139  Sum_probs=38.7

Q ss_pred             CceEEeCCCcccchhhH-------Hhhc--ccCCEEEEEEeCCC--hhhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCC
Q psy785            1 MLEILDTAGTEQFTAMR-------DLYM--KNGQGFILVYSITA--QSTFNDLSDLREQILRVKDT-DDVPMVLVGNKCD   68 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~-------~~~~--~~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D   68 (112)
                      .+.+|||||..+.....       ..++  .+.|++++|...+.  ....+  ...+..+...-+. .-.+.|++.|+.|
T Consensus        87 ~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~D--kqlLk~Iqe~FG~~iw~~~IVVfTh~d  164 (313)
T TIGR00991        87 TLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLD--GQVIRAITDSFGKDIWRKSLVVLTHAQ  164 (313)
T ss_pred             EEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHH--HHHHHHHHHHhhhhhhccEEEEEECCc
Confidence            37899999977542211       1111  26899999965432  22121  1222333332111 2357899999999


Q ss_pred             CCCc
Q psy785           69 LEEE   72 (112)
Q Consensus        69 ~~~~   72 (112)
                      ..++
T Consensus       165 ~~~p  168 (313)
T TIGR00991       165 FSPP  168 (313)
T ss_pred             cCCC
Confidence            7643

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=97.55  E-value=0.0023  Score=43.29  Aligned_cols=42  Identities=14%  Similarity=0.079  Sum_probs=28.9

Q ss_pred             CCcEEEEeeCCCCC-CcccccHHHHHHHHHHhCCcEEEeecCC
Q psy785           57 DVPMVLVGNKCDLE-EERVVGKEQGASLARAFACTFLETSAKA   98 (112)
Q Consensus        57 ~~p~ivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~   98 (112)
                      .+|+++++|+.|.. .......+...+++.+.+.+++++||.-
T Consensus       199 ~KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~  241 (364)
T PRK09601        199 AKPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAKI  241 (364)
T ss_pred             cCCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHHH
Confidence            38999999999852 1112224555667767788999999853

>KOG0705|consensus

Probab=97.54  E-value=0.00019  Score=50.44  Aligned_cols=94  Identities=18%  Similarity=0.394  Sum_probs=71.0

Q ss_pred             HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC--CcccccHHHHHHHHH-HhCCcEEEe
Q psy785           18 DLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE--EERVVGKEQGASLAR-AFACTFLET   94 (112)
Q Consensus        18 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~-~~~~~~~~~   94 (112)
                      ..+-..+|++||||...+..+++.+..+...+..+.....+|.++++++.-..  ..+.+......+.+. ...+.+|++
T Consensus        90 aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et  169 (749)
T KOG0705|consen   90 AQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYET  169 (749)
T ss_pred             hhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeec
Confidence            34556789999999999999999988877777766555678999888876543  234444555555444 456799999


Q ss_pred             ecCCCCChhHHhhhhcc
Q psy785           95 SAKAKVNSWLCVECTND  111 (112)
Q Consensus        95 Sa~~~~~v~~~~~~l~~  111 (112)
                      +|..|.++..+|+.+.+
T Consensus       170 ~atyGlnv~rvf~~~~~  186 (749)
T KOG0705|consen  170 CATYGLNVERVFQEVAQ  186 (749)
T ss_pred             chhhhhhHHHHHHHHHH
Confidence            99999999999987653

>KOG3887|consensus

Probab=97.50  E-value=0.0037  Score=40.14  Aligned_cols=108  Identities=12%  Similarity=0.118  Sum_probs=63.0

Q ss_pred             ceEEeCCCcccchh---hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCCCCCc-cccc
Q psy785            2 LEILDTAGTEQFTA---MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVPMVLVGNKCDLEEE-RVVG   76 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~---~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~~~~-~~~~   76 (112)
                      |++||.|||-.+..   -....++++-++++++|..+ +-.+.+.+.-.-+.+.... +++-+=++..|.|=..+ -.+.
T Consensus        77 f~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQd-dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kie  155 (347)
T KOG3887|consen   77 FQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQD-DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIE  155 (347)
T ss_pred             eEEeecCCccccCCCccCHHHHHhccCeEEEEEechH-HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhh
Confidence            68999999986532   34556889999999999754 3444444433333333222 56888889999995432 1111


Q ss_pred             HH-HH----HHHHHHhC---C--cEEEeecCCCCChhHHhhhhcc
Q psy785           77 KE-QG----ASLARAFA---C--TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        77 ~~-~~----~~~~~~~~---~--~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+ .+    ..-....|   +  .++-+| .-.+.+.|.|.++++
T Consensus       156 tqrdI~qr~~d~l~d~gle~v~vsf~LTS-IyDHSIfEAFSkvVQ  199 (347)
T KOG3887|consen  156 TQRDIHQRTNDELADAGLEKVQVSFYLTS-IYDHSIFEAFSKVVQ  199 (347)
T ss_pred             hHHHHHHHhhHHHHhhhhccceEEEEEee-ecchHHHHHHHHHHH
Confidence            11 11    11111122   2  344444 445778888887664

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.45  E-value=0.0005  Score=45.72  Aligned_cols=91  Identities=18%  Similarity=0.118  Sum_probs=58.5

Q ss_pred             CCcc-cchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHH
Q psy785            8 AGTE-QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARA   86 (112)
Q Consensus         8 ~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~   86 (112)
                      +|+. ++.......+..+|+++.|+|+-+|.+...     ..+.+..  .+.|.++|+||.|+.+... ..+-...+.++
T Consensus        18 ~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v--~~k~~i~vlNK~DL~~~~~-~~~W~~~~~~~   89 (322)
T COG1161          18 PGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIV--KEKPKLLVLNKADLAPKEV-TKKWKKYFKKE   89 (322)
T ss_pred             CCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHH--ccCCcEEEEehhhcCCHHH-HHHHHHHHHhc
Confidence            5543 455666677889999999999988764322     2223322  3456699999999975333 12222223333


Q ss_pred             hCCcEEEeecCCCCChhHHh
Q psy785           87 FACTFLETSAKAKVNSWLCV  106 (112)
Q Consensus        87 ~~~~~~~~Sa~~~~~v~~~~  106 (112)
                      .+...+.++++.+.+...+.
T Consensus        90 ~~~~~~~v~~~~~~~~~~i~  109 (322)
T COG1161          90 EGIKPIFVSAKSRQGGKKIR  109 (322)
T ss_pred             CCCccEEEEeecccCccchH
Confidence            46677888999888766555

>KOG1954|consensus

Probab=97.40  E-value=0.00053  Score=46.35  Aligned_cols=67  Identities=18%  Similarity=0.309  Sum_probs=45.1

Q ss_pred             CceEEeCCCccc-----------chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785            1 MLEILDTAGTEQ-----------FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL   69 (112)
Q Consensus         1 ~~~i~Dt~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~   69 (112)
                      ++.+.||||.-.           |.....=+.+.+|.++++||...-+-.+.....+..+..    ..-.+-+|.||.|.
T Consensus       148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~EdkiRVVLNKADq  223 (532)
T KOG1954|consen  148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----HEDKIRVVLNKADQ  223 (532)
T ss_pred             heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----CcceeEEEeccccc
Confidence            368999999332           233444467899999999998766544444444555544    33466778999998


Q ss_pred             CC
Q psy785           70 EE   71 (112)
Q Consensus        70 ~~   71 (112)
                      .+
T Consensus       224 Vd  225 (532)
T KOG1954|consen  224 VD  225 (532)
T ss_pred             cC
Confidence            65

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.37  E-value=0.0009  Score=40.62  Aligned_cols=44  Identities=23%  Similarity=0.226  Sum_probs=27.4

Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785           25 QGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE   71 (112)
Q Consensus        25 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~   71 (112)
                      |++++|+|+..+.+-.. ..+...+.  ....+.|+++|.||+|+.+
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~--l~~~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVL--QAGGNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHH--hccCCCCEEEEEehhhcCC
Confidence            78999999977632211 11222211  1124589999999999964

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG0467|consensus

Probab=97.34  E-value=0.00062  Score=49.49  Aligned_cols=62  Identities=16%  Similarity=0.259  Sum_probs=45.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD   68 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D   68 (112)
                      +.++|+||+-+|.+...+..+=+|+.+.++|+...-..+.. ..+.+.+.    .+..+++|.||+|
T Consensus        74 ~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~-~vlrq~~~----~~~~~~lvinkid  135 (887)
T KOG0467|consen   74 INLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTY-AVLRQAWI----EGLKPILVINKID  135 (887)
T ss_pred             EEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHH-HHHHHHHH----ccCceEEEEehhh
Confidence            67999999999999999888999999999998654322221 11222222    4567889999999

>cd01900 YchF YchF subfamily

Probab=97.26  E-value=0.0032  Score=41.02  Aligned_cols=41  Identities=17%  Similarity=0.097  Sum_probs=25.3

Q ss_pred             CcEEEEeeCCCCCC-cccccHHHHHHHHHHhCCcEEEeecCC
Q psy785           58 VPMVLVGNKCDLEE-ERVVGKEQGASLARAFACTFLETSAKA   98 (112)
Q Consensus        58 ~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~   98 (112)
                      +|+++++|+.|..- ...........++...+.+++++||.-
T Consensus       196 KP~i~v~N~~e~d~~~~~~~~~~~~~~~~~~~~~~i~~sa~~  237 (274)
T cd01900         196 KPVLYVANVSEDDLANGNNKVLKVREIAAKEGAEVIPISAKI  237 (274)
T ss_pred             CCceeecccCHHHhccccHHHHHHHHHHhcCCCeEEEeeHHH
Confidence            79999999998311 111112233444555677899999853

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG0465|consensus

Probab=97.25  E-value=0.00052  Score=48.80  Aligned_cols=63  Identities=27%  Similarity=0.310  Sum_probs=46.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL   69 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~   69 (112)
                      +.++||||+-+|..-....++-.|+++++++....-.-+...-|.. +.+    .++|.+.+.||+|.
T Consensus       106 iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~r----y~vP~i~FiNKmDR  168 (721)
T KOG0465|consen  106 INIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKR----YNVPRICFINKMDR  168 (721)
T ss_pred             eEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHh----cCCCeEEEEehhhh
Confidence            6899999999998877778888899999988744322222233432 233    56999999999995

>KOG0460|consensus

Probab=97.24  E-value=0.0025  Score=42.75  Aligned_cols=89  Identities=19%  Similarity=0.115  Sum_probs=53.7

Q ss_pred             EeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCC-cEEEEeeCCCCCCccccc---HHHH
Q psy785            5 LDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDV-PMVLVGNKCDLEEERVVG---KEQG   80 (112)
Q Consensus         5 ~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-p~ivv~nK~D~~~~~~~~---~~~~   80 (112)
                      .|+||+-+|-...-.=..+-|+.|+|+..++..=- ..+.-+...++    -++ -++++.||.|+.++.+..   +-+.
T Consensus       122 ~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MP-QTrEHlLLArQ----VGV~~ivvfiNKvD~V~d~e~leLVEmE~  196 (449)
T KOG0460|consen  122 TDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-QTREHLLLARQ----VGVKHIVVFINKVDLVDDPEMLELVEMEI  196 (449)
T ss_pred             CCCCchHHHHHHhhcCccccCceEEEEEcCCCCCc-chHHHHHHHHH----cCCceEEEEEecccccCCHHHHHHHHHHH
Confidence            58999998865443334567999999999884311 11111111222    233 467788999998544321   2245


Q ss_pred             HHHHHHhC-----CcEEEeecCC
Q psy785           81 ASLARAFA-----CTFLETSAKA   98 (112)
Q Consensus        81 ~~~~~~~~-----~~~~~~Sa~~   98 (112)
                      +++..++|     .|++.-||.-
T Consensus       197 RElLse~gf~Gd~~PvI~GSAL~  219 (449)
T KOG0460|consen  197 RELLSEFGFDGDNTPVIRGSALC  219 (449)
T ss_pred             HHHHHHcCCCCCCCCeeecchhh
Confidence            56666665     4788777654

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=97.23  E-value=0.0022  Score=42.16  Aligned_cols=80  Identities=18%  Similarity=0.143  Sum_probs=48.5

Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH---HHHH----HHhC--CcEE
Q psy785           22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG---ASLA----RAFA--CTFL   92 (112)
Q Consensus        22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~---~~~~----~~~~--~~~~   92 (112)
                      .-+|.++++.-+.-.+.++.++   ..+.+      +-=++|+||.|..... ....+.   ....    .+.+  .+++
T Consensus       163 ~~aDt~~~v~~pg~GD~~Q~iK---~GimE------iaDi~vINKaD~~~A~-~a~r~l~~al~~~~~~~~~~~W~ppv~  232 (323)
T COG1703         163 NMADTFLVVMIPGAGDDLQGIK---AGIME------IADIIVINKADRKGAE-KAARELRSALDLLREVWRENGWRPPVV  232 (323)
T ss_pred             hhcceEEEEecCCCCcHHHHHH---hhhhh------hhheeeEeccChhhHH-HHHHHHHHHHHhhcccccccCCCCcee
Confidence            4578888877765555555433   23333      4458899999954311 111111   1111    1123  4899


Q ss_pred             EeecCCCCChhHHhhhhcc
Q psy785           93 ETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        93 ~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+||..|.|++++.+.+.+
T Consensus       233 ~t~A~~g~Gi~~L~~ai~~  251 (323)
T COG1703         233 TTSALEGEGIDELWDAIED  251 (323)
T ss_pred             EeeeccCCCHHHHHHHHHH
Confidence            9999999999999988754

>KOG0085|consensus

Probab=97.19  E-value=0.00044  Score=43.98  Aligned_cols=109  Identities=15%  Similarity=0.132  Sum_probs=70.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA----------QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~   71 (112)
                      |++.|.+||..-...|-.++++...+++++..+.          +...+.-...+..+..+.=-.+.++|++.||.|+.+
T Consensus       201 frmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDlLE  280 (359)
T KOG0085|consen  201 FRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLE  280 (359)
T ss_pred             eeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhhhh
Confidence            6789999999888888888888877777765432          223333333444444443335789999999999864


Q ss_pred             c----------------ccccHHHHHHHHHHh----C------CcEEEeecCCCCChhHHhhhhc
Q psy785           72 E----------------RVVGKEQGASLARAF----A------CTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        72 ~----------------~~~~~~~~~~~~~~~----~------~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      +                +..+.+.++++.-+.    +      +--.+++|.+..|+.-+|....
T Consensus       281 ekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVk  345 (359)
T KOG0085|consen  281 EKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVK  345 (359)
T ss_pred             hhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHH
Confidence            3                223333444443322    2      1235688999999998887653

>KOG1424|consensus

Probab=97.16  E-value=0.0023  Score=44.82  Aligned_cols=76  Identities=20%  Similarity=0.134  Sum_probs=53.6

Q ss_pred             hHHhh---cccCCEEEEEEeCCChhhH--HHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCc
Q psy785           16 MRDLY---MKNGQGFILVYSITAQSTF--NDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACT   90 (112)
Q Consensus        16 ~~~~~---~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~   90 (112)
                      +|+..   ++..|+++.++|+-+|--|  .++..|..+..     ..+-.++++||.||.+...  .....++....+++
T Consensus       164 ~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d-----~~K~~~LLvNKaDLl~~~q--r~aWa~YF~~~ni~  236 (562)
T KOG1424|consen  164 IWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD-----PSKANVLLVNKADLLPPEQ--RVAWAEYFRQNNIP  236 (562)
T ss_pred             HHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccc-----cccceEEEEehhhcCCHHH--HHHHHHHHHhcCce
Confidence            45554   6789999999999887533  23444544432     3477899999999986443  34455667777899


Q ss_pred             EEEeecCC
Q psy785           91 FLETSAKA   98 (112)
Q Consensus        91 ~~~~Sa~~   98 (112)
                      +++-||..
T Consensus       237 ~vf~SA~~  244 (562)
T KOG1424|consen  237 VVFFSALA  244 (562)
T ss_pred             EEEEeccc
Confidence            99999987

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=97.16  E-value=0.00022  Score=45.79  Aligned_cols=80  Identities=16%  Similarity=0.087  Sum_probs=46.7

Q ss_pred             cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHH-------hCCcEEE
Q psy785           21 MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARA-------FACTFLE   93 (112)
Q Consensus        21 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~   93 (112)
                      ..-+|.+++|..+.-.+.++.++.   -+.+      +.=++|+||.|...... ...+.+.....       +..|++.
T Consensus       140 ~~~aD~~v~v~~Pg~GD~iQ~~Ka---GimE------iaDi~vVNKaD~~gA~~-~~~~l~~~l~l~~~~~~~W~ppV~~  209 (266)
T PF03308_consen  140 ADMADTVVLVLVPGLGDEIQAIKA---GIME------IADIFVVNKADRPGADR-TVRDLRSMLHLLREREDGWRPPVLK  209 (266)
T ss_dssp             HTTSSEEEEEEESSTCCCCCTB-T---THHH------H-SEEEEE--SHHHHHH-HHHHHHHHHHHCSTSCTSB--EEEE
T ss_pred             HHhcCeEEEEecCCCccHHHHHhh---hhhh------hccEEEEeCCChHHHHH-HHHHHHHHHhhccccccCCCCCEEE
Confidence            346899999998866665543322   2222      45589999999542211 11222221111       1248999


Q ss_pred             eecCCCCChhHHhhhhc
Q psy785           94 TSAKAKVNSWLCVECTN  110 (112)
Q Consensus        94 ~Sa~~~~~v~~~~~~l~  110 (112)
                      +||.++.|++++.+.+.
T Consensus       210 tsA~~~~Gi~eL~~~i~  226 (266)
T PF03308_consen  210 TSALEGEGIDELWEAID  226 (266)
T ss_dssp             EBTTTTBSHHHHHHHHH
T ss_pred             EEeCCCCCHHHHHHHHH
Confidence            99999999999998775

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG0463|consensus

Probab=97.04  E-value=0.0046  Score=42.17  Aligned_cols=100  Identities=18%  Similarity=0.185  Sum_probs=57.5

Q ss_pred             ceEEeCCCcccchhhH--HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHH
Q psy785            2 LEILDTAGTEQFTAMR--DLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQ   79 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~   79 (112)
                      +.|+|.+|+|+|-...  ...-.-.|..++|+..+-. -+...+.-+.....    -..|+.+|.+|+|+-+.... .+.
T Consensus       221 iTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLALa----L~VPVfvVVTKIDMCPANiL-qEt  294 (641)
T KOG0463|consen  221 ITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLALA----LHVPVFVVVTKIDMCPANIL-QET  294 (641)
T ss_pred             EEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhhh----hcCcEEEEEEeeccCcHHHH-HHH
Confidence            6799999999985422  2222346888888876432 11111122222222    35899999999998643221 111


Q ss_pred             ---HHHH--------------------------HHHhCCcEEEeecCCCCChhHHhh
Q psy785           80 ---GASL--------------------------ARAFACTFLETSAKAKVNSWLCVE  107 (112)
Q Consensus        80 ---~~~~--------------------------~~~~~~~~~~~Sa~~~~~v~~~~~  107 (112)
                         +.++                          ..+.-+|+|.+|-.+|.|+.-+..
T Consensus       295 mKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkm  351 (641)
T KOG0463|consen  295 MKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKM  351 (641)
T ss_pred             HHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHH
Confidence               1111                          112226899999999999775543

>KOG0464|consensus

Probab=96.92  E-value=0.00015  Score=49.70  Aligned_cols=64  Identities=22%  Similarity=0.287  Sum_probs=50.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      ++++||||+.+|.-....+++-.|+++.|||.+-.-.-+.+.-|..     ....++|...+.||+|..
T Consensus       104 inlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrq-----adk~~ip~~~finkmdk~  167 (753)
T KOG0464|consen  104 INLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ-----ADKFKIPAHCFINKMDKL  167 (753)
T ss_pred             EeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehh-----ccccCCchhhhhhhhhhh
Confidence            5789999999999888999999999999999875433344444532     233679999999999964

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=96.92  E-value=0.0074  Score=38.82  Aligned_cols=69  Identities=17%  Similarity=0.112  Sum_probs=37.6

Q ss_pred             ceEEeCCCcccchh----------hHHhhcc--cCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCC-CCCcEEEEeeCC
Q psy785            2 LEILDTAGTEQFTA----------MRDLYMK--NGQGFILVYSITAQS-TFNDLSDLREQILRVKDT-DDVPMVLVGNKC   67 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~----------~~~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~   67 (112)
                      +.+|||||......          ....++.  +.++++++..++... ...+ ...+..+.+..+. .-.++++|.||+
T Consensus        81 i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~  159 (249)
T cd01853          81 LNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHA  159 (249)
T ss_pred             EEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCC
Confidence            68999999664421          0112332  678888887654332 1111 1222333332211 125799999999


Q ss_pred             CCCC
Q psy785           68 DLEE   71 (112)
Q Consensus        68 D~~~   71 (112)
                      |...
T Consensus       160 d~~~  163 (249)
T cd01853         160 ASSP  163 (249)
T ss_pred             ccCC
Confidence            9854

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=96.91  E-value=0.0084  Score=37.52  Aligned_cols=94  Identities=16%  Similarity=0.176  Sum_probs=46.1

Q ss_pred             ceEEeCCCcccch--------hhH---HhhcccCCEEEEEEeCCChhh-HHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785            2 LEILDTAGTEQFT--------AMR---DLYMKNGQGFILVYSITAQST-FNDLSDLREQILRVKDTDDVPMVLVGNKCDL   69 (112)
Q Consensus         2 ~~i~Dt~g~~~~~--------~~~---~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~   69 (112)
                      +.++||||-.+..        .+.   .....+.+++++|+....... -...-.++..+...  ..-.-++++.+..|.
T Consensus        51 v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~--~~~k~~ivvfT~~d~  128 (212)
T PF04548_consen   51 VTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGE--EIWKHTIVVFTHADE  128 (212)
T ss_dssp             EEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCG--GGGGGEEEEEEEGGG
T ss_pred             EEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccH--HHHhHhhHHhhhccc
Confidence            6799999943211        111   123568999999999873321 11122233333221  112357778888876


Q ss_pred             CCccccc-------HHHHHHHHHHhCCcEEEeecC
Q psy785           70 EEERVVG-------KEQGASLARAFACTFLETSAK   97 (112)
Q Consensus        70 ~~~~~~~-------~~~~~~~~~~~~~~~~~~Sa~   97 (112)
                      ..+..+.       ...+..+.+..+-.+...+.+
T Consensus       129 ~~~~~~~~~l~~~~~~~l~~li~~c~~R~~~f~n~  163 (212)
T PF04548_consen  129 LEDDSLEDYLKKESNEALQELIEKCGGRYHVFNNK  163 (212)
T ss_dssp             GTTTTHHHHHHHHHHHHHHHHHHHTTTCEEECCTT
T ss_pred             cccccHHHHHhccCchhHhHHhhhcCCEEEEEecc
Confidence            5433311       122334455556566666655

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>KOG2484|consensus

Probab=96.84  E-value=0.0042  Score=42.26  Aligned_cols=81  Identities=15%  Similarity=0.081  Sum_probs=52.3

Q ss_pred             cchhhHHhhcccCCEEEEEEeCCChhhH--HHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCC
Q psy785           12 QFTAMRDLYMKNGQGFILVYSITAQSTF--NDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFAC   89 (112)
Q Consensus        12 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~   89 (112)
                      .|....+..++.+|+++-|.|.-+|.+-  ..+..|.   .+.  ..++..|+|.||+|+.++..  .+....+.+..+.
T Consensus       135 aY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V---~~~--~gnKkLILVLNK~DLVPrEv--~e~Wl~YLr~~~p  207 (435)
T KOG2484|consen  135 AYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAV---LQA--HGNKKLILVLNKIDLVPREV--VEKWLVYLRREGP  207 (435)
T ss_pred             HHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHH---Hhc--cCCceEEEEeehhccCCHHH--HHHHHHHHHhhCC
Confidence            4566667778899999999999888643  2344443   221  13488999999999986332  3444455555555


Q ss_pred             cEEEeecCCC
Q psy785           90 TFLETSAKAK   99 (112)
Q Consensus        90 ~~~~~Sa~~~   99 (112)
                      .+.+.++...
T Consensus       208 tv~fkast~~  217 (435)
T KOG2484|consen  208 TVAFKASTQM  217 (435)
T ss_pred             cceeeccccc
Confidence            5555554443

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

Probab=96.80  E-value=0.025  Score=36.79  Aligned_cols=78  Identities=22%  Similarity=0.169  Sum_probs=51.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +-+.|+|.--  .--.-..+.++|.+++|-.+| +..+.++++.++....    .++|..+|.||.+...     . +.+
T Consensus       166 ~~IIDsaaG~--gCpVi~sl~~aD~ai~VTEPT-p~glhD~kr~~el~~~----f~ip~~iViNr~~~g~-----s-~ie  232 (284)
T COG1149         166 LLIIDSAAGT--GCPVIASLKGADLAILVTEPT-PFGLHDLKRALELVEH----FGIPTGIVINRYNLGD-----S-EIE  232 (284)
T ss_pred             eeEEecCCCC--CChHHHhhccCCEEEEEecCC-ccchhHHHHHHHHHHH----hCCceEEEEecCCCCc-----h-HHH
Confidence            3467777211  112234578999999998876 4566676666555544    5799999999995432     1 567


Q ss_pred             HHHHHhCCcEE
Q psy785           82 SLARAFACTFL   92 (112)
Q Consensus        82 ~~~~~~~~~~~   92 (112)
                      +++.+.+++++
T Consensus       233 ~~~~e~gi~il  243 (284)
T COG1149         233 EYCEEEGIPIL  243 (284)
T ss_pred             HHHHHcCCCee
Confidence            78888777654

>KOG0448|consensus

Probab=96.79  E-value=0.024  Score=41.21  Aligned_cols=91  Identities=19%  Similarity=0.297  Sum_probs=57.0

Q ss_pred             ceEEeCCCcc---cchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEE-EeeCCCCCCcccccH
Q psy785            2 LEILDTAGTE---QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL-VGNKCDLEEERVVGK   77 (112)
Q Consensus         2 ~~i~Dt~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~iv-v~nK~D~~~~~~~~~   77 (112)
                      +.+.|.||..   ...+....+-.++|++|+|....+..+... .+++....+     .+|-|+ +.||+|....++.+.
T Consensus       208 ivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~-----~KpniFIlnnkwDasase~ec~  281 (749)
T KOG0448|consen  208 IVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE-----EKPNIFILNNKWDASASEPECK  281 (749)
T ss_pred             ceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc-----cCCcEEEEechhhhhcccHHHH
Confidence            4678999965   345566677889999999999877654433 334444332     256444 567889876555444


Q ss_pred             HHHHHHHHHhC--------CcEEEeecCC
Q psy785           78 EQGASLARAFA--------CTFLETSAKA   98 (112)
Q Consensus        78 ~~~~~~~~~~~--------~~~~~~Sa~~   98 (112)
                      +...+-..+++        =.+++|||+.
T Consensus       282 e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e  310 (749)
T KOG0448|consen  282 EDVLKQIHELSVVTEKEAADRVFFVSAKE  310 (749)
T ss_pred             HHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence            44433333332        2588899664

>KOG0459|consensus

Probab=96.78  E-value=0.0017  Score=44.38  Aligned_cols=103  Identities=17%  Similarity=0.124  Sum_probs=59.2

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCCh---hhHHH---HHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc-
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQ---STFND---LSDLREQILRVKDTDDVPMVLVGNKCDLEEER-   73 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~---~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~-   73 (112)
                      ++.+.|+||+..|-...-.=..+||.-++|++.-..   ..|+.   .+.- ..+.+.  ..-.-.+++.||+|-+.-. 
T Consensus       158 ~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREh-a~Lakt--~gv~~lVv~vNKMddPtvnW  234 (501)
T KOG0459|consen  158 RFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREH-AMLAKT--AGVKHLIVLINKMDDPTVNW  234 (501)
T ss_pred             eEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHH-HHHHHh--hccceEEEEEEeccCCccCc
Confidence            368899999988754333345678888888886221   12221   1111 111111  1235678889999965311 


Q ss_pred             -----cccHHHHHHHHHHhC------CcEEEeecCCCCChhHHh
Q psy785           74 -----VVGKEQGASLARAFA------CTFLETSAKAKVNSWLCV  106 (112)
Q Consensus        74 -----~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~~  106 (112)
                           ....++...+.+..|      ..++++|..+|.++.+-.
T Consensus       235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~  278 (501)
T KOG0459|consen  235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT  278 (501)
T ss_pred             chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence                 112233344444333      368999999999987754

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=96.63  E-value=0.034  Score=32.40  Aligned_cols=64  Identities=14%  Similarity=0.135  Sum_probs=41.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      +.++|+|+..  .......+..+|.++++.+.+ ..++......++.+.+..  ...++.++.|+.+-.
T Consensus        47 ~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~~  110 (139)
T cd02038          47 YIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQL--RVLNFRVVVNRAESP  110 (139)
T ss_pred             EEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCCH
Confidence            4689999643  333456788999999999986 345554444444444322  345677899999743

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>KOG2486|consensus

Probab=96.53  E-value=0.0055  Score=39.99  Aligned_cols=102  Identities=16%  Similarity=0.114  Sum_probs=59.1

Q ss_pred             ceEEeCCC----------cccchhhHHhhcc---cCCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCCcEEEEeeC
Q psy785            2 LEILDTAG----------TEQFTAMRDLYMK---NGQGFILVYSITAQS--TFNDLSDLREQILRVKDTDDVPMVLVGNK   66 (112)
Q Consensus         2 ~~i~Dt~g----------~~~~~~~~~~~~~---~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ivv~nK   66 (112)
                      +.+.|.||          ..++..+...|+-   +--.+.+++|++.+-  .-.....|+.+       .++|..+|.||
T Consensus       185 ~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge-------~~VP~t~vfTK  257 (320)
T KOG2486|consen  185 WYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE-------NNVPMTSVFTK  257 (320)
T ss_pred             EEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh-------cCCCeEEeeeh
Confidence            56788998          2233445555532   445666677765432  22233345332       67999999999


Q ss_pred             CCCCCcc------c-ccHHH-HH---HHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785           67 CDLEEER------V-VGKEQ-GA---SLARAFACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        67 ~D~~~~~------~-~~~~~-~~---~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      +|.....      + ...+. ..   +.+.....|++.+|+.++.|+++++-.+.
T Consensus       258 ~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~  312 (320)
T KOG2486|consen  258 CDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIA  312 (320)
T ss_pred             hhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehh
Confidence            9975321      1 11111 11   11222245888899999999998876554

>KOG4273|consensus

Probab=96.51  E-value=0.016  Score=37.50  Aligned_cols=83  Identities=16%  Similarity=0.177  Sum_probs=55.5

Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCC-cEEEEeeCCCCCCc---------------------------c-
Q psy785           23 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDV-PMVLVGNKCDLEEE---------------------------R-   73 (112)
Q Consensus        23 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-p~ivv~nK~D~~~~---------------------------~-   73 (112)
                      ...+++.+||.+....+..+..|+....    .... -.+.+|||.|..+.                           . 
T Consensus        78 pl~a~vmvfdlse~s~l~alqdwl~htd----insfdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfg  153 (418)
T KOG4273|consen   78 PLQAFVMVFDLSEKSGLDALQDWLPHTD----INSFDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFG  153 (418)
T ss_pred             ceeeEEEEEeccchhhhHHHHhhccccc----cccchhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcc
Confidence            3578899999999889999999965432    2222 34457899985421                           0 


Q ss_pred             -------------c---ccHHHHHHHHHHhCCcEEEeecCCC------------CChhHHhhhh
Q psy785           74 -------------V---VGKEQGASLARAFACTFLETSAKAK------------VNSWLCVECT  109 (112)
Q Consensus        74 -------------~---~~~~~~~~~~~~~~~~~~~~Sa~~~------------~~v~~~~~~l  109 (112)
                                   .   .......+||.+.++++++.||.+.            .||+.+|..|
T Consensus       154 isetegssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal  217 (418)
T KOG4273|consen  154 ISETEGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGAL  217 (418)
T ss_pred             ccccccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHh
Confidence                         0   1122356788888999999998553            4677777665

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=96.50  E-value=0.017  Score=39.34  Aligned_cols=92  Identities=17%  Similarity=0.086  Sum_probs=42.3

Q ss_pred             ceEEeCCCcccchhhHHh-----hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC--CC---
Q psy785            2 LEILDTAGTEQFTAMRDL-----YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL--EE---   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~--~~---   71 (112)
                      +.+||.||......-...     -+..-|.+|++.+.-=  +..++ .....+.+    .++|+.+|-+|+|.  .+   
T Consensus        88 v~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~rf--~~ndv-~La~~i~~----~gK~fyfVRTKvD~Dl~~~~~  160 (376)
T PF05049_consen   88 VTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSERF--TENDV-QLAKEIQR----MGKKFYFVRTKVDSDLYNERR  160 (376)
T ss_dssp             EEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESSS----HHHH-HHHHHHHH----TT-EEEEEE--HHHHHHHHHC
T ss_pred             CeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCCCC--chhhH-HHHHHHHH----cCCcEEEEEecccccHhhhhc
Confidence            689999995432222222     3557898888776321  12222 12233433    56899999999995  11   


Q ss_pred             --ccccc----HHHHHHHHHH----hCC---cEEEeecCCCC
Q psy785           72 --ERVVG----KEQGASLARA----FAC---TFLETSAKAKV  100 (112)
Q Consensus        72 --~~~~~----~~~~~~~~~~----~~~---~~~~~Sa~~~~  100 (112)
                        ++..+    .+..++.|.+    .|+   ++|-+|+.+-.
T Consensus       161 ~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~  202 (376)
T PF05049_consen  161 RKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLS  202 (376)
T ss_dssp             C-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTT
T ss_pred             cCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcc
Confidence              11222    2233444432    233   78889988743

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=96.39  E-value=0.11  Score=33.97  Aligned_cols=90  Identities=13%  Similarity=-0.036  Sum_probs=52.1

Q ss_pred             ceEEeCCCcccchhhHH----h---hc-----ccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785            2 LEILDTAGTEQFTAMRD----L---YM-----KNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCD   68 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~----~---~~-----~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D   68 (112)
                      +-++||||........-    .   ..     ..+|..++|+|.+... .++..    ..+.+.   - -+.-++.||.|
T Consensus       157 ~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~---~-~~~g~IlTKlD  228 (272)
T TIGR00064       157 VVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEA---V-GLTGIILTKLD  228 (272)
T ss_pred             EEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhh---C-CCCEEEEEccC
Confidence            45899999664332111    1   11     2489999999997532 33222    222221   1 24567799999


Q ss_pred             CCCcccccHHHHHHHHHHhCCcEEEeecCCCCChhHH
Q psy785           69 LEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLC  105 (112)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  105 (112)
                      ......    .........+.|+.+++  +|++++++
T Consensus       229 e~~~~G----~~l~~~~~~~~Pi~~~~--~Gq~~~dl  259 (272)
T TIGR00064       229 GTAKGG----IILSIAYELKLPIKFIG--VGEKIDDL  259 (272)
T ss_pred             CCCCcc----HHHHHHHHHCcCEEEEe--CCCChHhC
Confidence            754322    23344556688998888  67766554

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG0469|consensus

Probab=96.38  E-value=0.006  Score=43.08  Aligned_cols=63  Identities=19%  Similarity=0.298  Sum_probs=45.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL   69 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~   69 (112)
                      ++++|.||+.+|++.....++=.|+.+.|+|.-+.--.+.- .-+.+...    .++..+++.||.|.
T Consensus       100 iNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~----ERIkPvlv~NK~DR  162 (842)
T KOG0469|consen  100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIA----ERIKPVLVMNKMDR  162 (842)
T ss_pred             EEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHH----hhccceEEeehhhH
Confidence            68999999999999999999999999999998654322221 11222222    34666788999994

>PRK13505 formate--tetrahydrofolate ligase; Provisional

Probab=95.86  E-value=0.11  Score=37.23  Aligned_cols=41  Identities=17%  Similarity=0.092  Sum_probs=31.2

Q ss_pred             CCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCC
Q psy785           56 DDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKA   98 (112)
Q Consensus        56 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~   98 (112)
                      .++|++|+.||.|...+.+  .+.++++|.+.|+++..+..-.
T Consensus       371 FGvPvVVAINKFd~DTe~E--i~~I~~~c~e~Gv~va~~~~~~  411 (557)
T PRK13505        371 FGVPVVVAINKFVTDTDAE--IAALKELCEELGVEVALSEVWA  411 (557)
T ss_pred             cCCCEEEEEeCCCCCCHHH--HHHHHHHHHHcCCCEEEecccc
Confidence            6799999999999864332  4667889999999887554433

>PRK14974 cell division protein FtsY; Provisional

Probab=95.85  E-value=0.17  Score=34.16  Aligned_cols=91  Identities=14%  Similarity=0.048  Sum_probs=52.3

Q ss_pred             ceEEeCCCcccchh-h---HHhh--cccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc
Q psy785            2 LEILDTAGTEQFTA-M---RDLY--MKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV   74 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~-~---~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~   74 (112)
                      +-++||+|.-.... +   .+..  .-+.|..++|.|.+... ..+..    ..+.+.   .+ +--++.||.|......
T Consensus       225 vVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a----~~f~~~---~~-~~giIlTKlD~~~~~G  296 (336)
T PRK14974        225 VVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA----REFNEA---VG-IDGVILTKVDADAKGG  296 (336)
T ss_pred             EEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH----HHHHhc---CC-CCEEEEeeecCCCCcc
Confidence            46899999664321 1   1111  23678999999986543 22222    122211   12 3456799999754222


Q ss_pred             ccHHHHHHHHHHhCCcEEEeecCCCCChhHHh
Q psy785           75 VGKEQGASLARAFACTFLETSAKAKVNSWLCV  106 (112)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  106 (112)
                          .....+...+.|+.+++  +|++++++.
T Consensus       297 ----~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~  322 (336)
T PRK14974        297 ----AALSIAYVIGKPILFLG--VGQGYDDLI  322 (336)
T ss_pred             ----HHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence                22344455688998887  688876653

>KOG0447|consensus

Probab=95.77  E-value=0.077  Score=38.20  Aligned_cols=69  Identities=17%  Similarity=0.233  Sum_probs=46.3

Q ss_pred             hhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHH
Q psy785           14 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLAR   85 (112)
Q Consensus        14 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~   85 (112)
                      ..+...|..+.+++|+++.-...+   .-+.-...+...++..+...|+|.+|.|+.+....++..++++..
T Consensus       439 ~~msKayM~NPNAIILCIQDGSVD---AERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIle  507 (980)
T KOG0447|consen  439 FSISKAYMQNPNAIILCIQDGSVD---AERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIE  507 (980)
T ss_pred             HHHHHHHhcCCCeEEEEeccCCcc---hhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHh
Confidence            446677889999999998532222   222233344444555678899999999998766666766666654

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=95.74  E-value=0.2  Score=30.59  Aligned_cols=86  Identities=7%  Similarity=0.012  Sum_probs=60.2

Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCCCCh
Q psy785           23 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS  102 (112)
Q Consensus        23 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  102 (112)
                      ..|.++|++|.+...|++.++.=+..+....- -+ .+.++++-..-.+...+...+..+++..+.+|++.+.-.+..+.
T Consensus        64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~ff-lG-KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~  141 (176)
T PF11111_consen   64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFF-LG-KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGR  141 (176)
T ss_pred             eeEEEEEEEecCCcccHHHHHHHHhhCChhhh-cc-ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHH
Confidence            57999999999999998877654333322111 13 34444555544444567788899999999999999988888777


Q ss_pred             hHHhhhhc
Q psy785          103 WLCVECTN  110 (112)
Q Consensus       103 ~~~~~~l~  110 (112)
                      ..+-++|.
T Consensus       142 ~~lAqRLL  149 (176)
T PF11111_consen  142 TSLAQRLL  149 (176)
T ss_pred             HHHHHHHH
Confidence            77766654

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>PHA02518 ParA-like protein; Provisional

Probab=95.72  E-value=0.23  Score=30.65  Aligned_cols=64  Identities=13%  Similarity=0.188  Sum_probs=38.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS--TFNDLSDLREQILRVKDTDDVP-MVLVGNKCDL   69 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~   69 (112)
                      +-|+||||..  .......+..+|.++++...+...  ....+..++..+....  .+.| ..++.|+.+.
T Consensus        79 ~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iv~n~~~~  145 (211)
T PHA02518         79 YVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVT--DGLPKFAFIISRAIK  145 (211)
T ss_pred             EEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhC--CCCceEEEEEeccCC
Confidence            4689999863  345666788999999999886432  2333333444332221  2344 4456677653

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=95.72  E-value=0.25  Score=33.05  Aligned_cols=90  Identities=12%  Similarity=0.017  Sum_probs=52.0

Q ss_pred             ceEEeCCCcccch--------hhHHh---h-cccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785            2 LEILDTAGTEQFT--------AMRDL---Y-MKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCD   68 (112)
Q Consensus         2 ~~i~Dt~g~~~~~--------~~~~~---~-~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D   68 (112)
                      +-++||||.....        .+.+.   . -..++..++|.|.+... .+.....    ..+.   . -+.-++.||.|
T Consensus       199 ~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~----f~~~---~-~~~giIlTKlD  270 (318)
T PRK10416        199 VLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKA----FHEA---V-GLTGIILTKLD  270 (318)
T ss_pred             EEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHH----HHhh---C-CCCEEEEECCC
Confidence            4689999965321        11111   1 13578899999997532 3322211    1111   1 24567899999


Q ss_pred             CCCcccccHHHHHHHHHHhCCcEEEeecCCCCChhHH
Q psy785           69 LEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLC  105 (112)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  105 (112)
                      .....    -.........+.|+.+++  +|++++++
T Consensus       271 ~t~~~----G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl  301 (318)
T PRK10416        271 GTAKG----GVVFAIADELGIPIKFIG--VGEGIDDL  301 (318)
T ss_pred             CCCCc----cHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence            54322    233445566799999988  67776554

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=95.45  E-value=0.28  Score=29.36  Aligned_cols=83  Identities=10%  Similarity=0.085  Sum_probs=48.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +-++|||+....  .....+..+|.++++++.+. .++..+..++..+...   ......++.|+.+.....  ..+...
T Consensus        65 ~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~~~--~~~~~~  136 (179)
T cd02036          65 YILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDMVE--GGDMVE  136 (179)
T ss_pred             EEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc---CCceEEEEEeCCcccccc--hhhHHH
Confidence            468999975432  23445688999999998764 4555555555555442   223567889999864221  122233


Q ss_pred             HHHHHhCCcEE
Q psy785           82 SLARAFACTFL   92 (112)
Q Consensus        82 ~~~~~~~~~~~   92 (112)
                      .+.+.++.+++
T Consensus       137 ~~~~~~~~~v~  147 (179)
T cd02036         137 DIEEILGVPLL  147 (179)
T ss_pred             HHHHHhCCCEE
Confidence            44444565543

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=95.45  E-value=0.2  Score=27.77  Aligned_cols=62  Identities=13%  Similarity=0.107  Sum_probs=39.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNK   66 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK   66 (112)
                      +-+.|||+...  ......+..+|.++++.+.+ ..+......+...+.+........+.+|+|+
T Consensus        45 ~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          45 YVVVDLGRSLD--EVSLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             EEEEeCCCCcC--HHHHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            46899997543  23345678899999998865 4566666666666655332113456677775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>KOG2423|consensus

Probab=94.92  E-value=0.24  Score=34.36  Aligned_cols=75  Identities=12%  Similarity=0.153  Sum_probs=44.4

Q ss_pred             cccCCEEEEEEeCCChhh--HHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCC
Q psy785           21 MKNGQGFILVYSITAQST--FNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKA   98 (112)
Q Consensus        21 ~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~   98 (112)
                      +...|+++-|+|.-+|..  ...+..+   +.+.  .+.+-.|.|.||+||.+ ..+...=...+.+++..--|..|..+
T Consensus       211 iDSSDVvvqVlDARDPmGTrc~~ve~y---lkke--~phKHli~vLNKvDLVP-twvt~~Wv~~lSkeyPTiAfHAsi~n  284 (572)
T KOG2423|consen  211 IDSSDVVVQVLDARDPMGTRCKHVEEY---LKKE--KPHKHLIYVLNKVDLVP-TWVTAKWVRHLSKEYPTIAFHASINN  284 (572)
T ss_pred             hcccceeEEeeeccCCcccccHHHHHH---Hhhc--CCcceeEEEeecccccc-HHHHHHHHHHHhhhCcceeeehhhcC
Confidence            457899999999988742  2333333   2332  26678999999999974 22222222333344444445566555


Q ss_pred             CCC
Q psy785           99 KVN  101 (112)
Q Consensus        99 ~~~  101 (112)
                      .+|
T Consensus       285 sfG  287 (572)
T KOG2423|consen  285 SFG  287 (572)
T ss_pred             ccc
Confidence            555

>KOG0410|consensus

Probab=94.92  E-value=0.093  Score=35.34  Aligned_cols=79  Identities=15%  Similarity=0.091  Sum_probs=49.2

Q ss_pred             hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcE----EEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEee
Q psy785           20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM----VLVGNKCDLEEERVVGKEQGASLARAFACTFLETS   95 (112)
Q Consensus        20 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~----ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S   95 (112)
                      .+..+|.++.|.|++.|+.-+....-+.-+.+. +.+..|.    +=|-||+|..+.....+        .++  .+.+|
T Consensus       254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e~~~~e~E--------~n~--~v~is  322 (410)
T KOG0410|consen  254 EVAEADLLLHVVDISHPNAEEQRETVLHVLNQI-GVPSEPKLQNMIEVDNKIDYEEDEVEEE--------KNL--DVGIS  322 (410)
T ss_pred             HHhhcceEEEEeecCCccHHHHHHHHHHHHHhc-CCCcHHHHhHHHhhccccccccccCccc--------cCC--ccccc
Confidence            356899999999999997655444444433332 2222232    23558888654322111        122  67889


Q ss_pred             cCCCCChhHHhhhh
Q psy785           96 AKAKVNSWLCVECT  109 (112)
Q Consensus        96 a~~~~~v~~~~~~l  109 (112)
                      |++|.|.+++...+
T Consensus       323 altgdgl~el~~a~  336 (410)
T KOG0410|consen  323 ALTGDGLEELLKAE  336 (410)
T ss_pred             cccCccHHHHHHHH
Confidence            99999999988764

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=94.85  E-value=0.14  Score=39.96  Aligned_cols=68  Identities=19%  Similarity=0.218  Sum_probs=43.1

Q ss_pred             eEEeCCCcc--------cchhhHHhhc---------ccCCEEEEEEeCCCh-----hhH----HHHHHHHHHHHhhcCCC
Q psy785            3 EILDTAGTE--------QFTAMRDLYM---------KNGQGFILVYSITAQ-----STF----NDLSDLREQILRVKDTD   56 (112)
Q Consensus         3 ~i~Dt~g~~--------~~~~~~~~~~---------~~~d~~i~v~d~~~~-----~s~----~~~~~~~~~i~~~~~~~   56 (112)
                      -++||+|..        .....|..++         +..+|+|+++|+.+-     ...    ..++..+.++.+..+ .
T Consensus       164 vliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg-~  242 (1169)
T TIGR03348       164 VLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG-A  242 (1169)
T ss_pred             EEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC-C
Confidence            478999822        1223444442         358999999998542     111    234445555554432 4


Q ss_pred             CCcEEEEeeCCCCCC
Q psy785           57 DVPMVLVGNKCDLEE   71 (112)
Q Consensus        57 ~~p~ivv~nK~D~~~   71 (112)
                      ..|+.++.+|+|+..
T Consensus       243 ~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       243 RFPVYLVLTKADLLA  257 (1169)
T ss_pred             CCCEEEEEecchhhc
Confidence            799999999999874

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=94.83  E-value=0.58  Score=29.64  Aligned_cols=65  Identities=8%  Similarity=0.080  Sum_probs=40.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      +-++|||+.  ........+..+|.++++...+ ..++..+......+.+.. ....+.-++.|+.+..
T Consensus       117 ~viiD~pp~--~~~~~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~~~~-~~~~~~~iv~n~~~~~  181 (246)
T TIGR03371       117 WVLIDVPRG--PSPITRQALAAADLVLVVVNAD-AACYATLHQQALALFAGS-GPRIGPHFLINQFDPA  181 (246)
T ss_pred             EEEEECCCC--chHHHHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHhhcc-cccccceEEeeccCcc
Confidence            458899973  3445566778999999999875 345555542222222211 1235577889999854

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=94.60  E-value=0.74  Score=29.77  Aligned_cols=82  Identities=10%  Similarity=0.077  Sum_probs=45.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEeeCCCCCCcccccHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV-LVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~~~~~~~~~~~~   80 (112)
                      +-|+||+|.-.... ....+..+|.++++... +..++..+......+.......++++. ++.|+.+.       ....
T Consensus       120 ~viIDt~g~~~~~~-~~~~l~~AD~viip~~~-~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-------~~~~  190 (270)
T PRK13185        120 VILFDVLGDVVCGG-FAAPLQYADYALIVTAN-DFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-------TDLI  190 (270)
T ss_pred             EEEEecCCCcccCc-ccchhhhCcEEEEEecC-chhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh-------HHHH
Confidence            46889986543222 22336679999998865 445565555544444332112456643 77899762       1223


Q ss_pred             HHHHHHhCCcEE
Q psy785           81 ASLARAFACTFL   92 (112)
Q Consensus        81 ~~~~~~~~~~~~   92 (112)
                      .++.+.++.+++
T Consensus       191 ~~~~~~~g~~vl  202 (270)
T PRK13185        191 DKFNEAVGLKVL  202 (270)
T ss_pred             HHHHHHcCCCEE
Confidence            445555555443

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=94.55  E-value=0.65  Score=28.95  Aligned_cols=87  Identities=11%  Similarity=0.092  Sum_probs=48.3

Q ss_pred             ceEEeCCCcccchhhHH-hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCcccccHHH
Q psy785            2 LEILDTAGTEQFTAMRD-LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERVVGKEQ   79 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~   79 (112)
                      +-++||+|......+.. ...+.+|.++++.+.+ ..++..+....+.+.......+.+ .-++.||.+..    ...+.
T Consensus       119 ~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~----~~~~~  193 (212)
T cd02117         119 VVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD----RETEL  193 (212)
T ss_pred             EEEEecCCCceecccccccccccCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc----cHHHH
Confidence            35788876443222211 1124799999999874 445544444444444433222333 44789999853    22344


Q ss_pred             HHHHHHHhCCcEEE
Q psy785           80 GASLARAFACTFLE   93 (112)
Q Consensus        80 ~~~~~~~~~~~~~~   93 (112)
                      .+++.+.++.+++.
T Consensus       194 ~~~~~~~~~~~vl~  207 (212)
T cd02117         194 IDAFAERLGTQVIH  207 (212)
T ss_pred             HHHHHHHcCCCEEE
Confidence            56667777765553

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]

Probab=94.49  E-value=1  Score=30.86  Aligned_cols=66  Identities=14%  Similarity=0.311  Sum_probs=48.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~   71 (112)
                      +.++|-|  .-.......++.++|.+++|.+.+- .++...++.+..+.+.. ....+..++.||.+...
T Consensus       220 ~vV~Dlp--~~~~~~t~~vL~~Sd~iviv~e~sl-~slR~ak~lld~l~~~r-~~~~~p~lv~n~~~~~~  285 (366)
T COG4963         220 FVVVDLP--NIWTDWTRQVLSGSDEIVIVAEPSL-ASLRNAKELLDELKRLR-PNDPKPILVLNRVGVPK  285 (366)
T ss_pred             eEEEcCC--CccchHHHHHHhcCCeEEEEecccH-HHHHHHHHHHHHHHHhC-CCCCCceEEeeecCCCC
Confidence            4577888  3345567788999999999999764 46666677777777654 34567788899998754

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=94.49  E-value=0.78  Score=29.60  Aligned_cols=60  Identities=22%  Similarity=0.252  Sum_probs=38.6

Q ss_pred             eEEeCC-CcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-CcEEEEeeCCCCC
Q psy785            3 EILDTA-GTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDD-VPMVLVGNKCDLE   70 (112)
Q Consensus         3 ~i~Dt~-g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-~p~ivv~nK~D~~   70 (112)
                      -+.||- |.|.|   .|...+++|.++.|+|++. +|+....+.. ++.+   .-+ .++.+|.||.|-.
T Consensus       137 VivDtEAGiEHf---gRg~~~~vD~vivVvDpS~-~sl~taeri~-~L~~---elg~k~i~~V~NKv~e~  198 (255)
T COG3640         137 VIVDTEAGIEHF---GRGTIEGVDLVIVVVDPSY-KSLRTAERIK-ELAE---ELGIKRIFVVLNKVDEE  198 (255)
T ss_pred             EEEecccchhhh---ccccccCCCEEEEEeCCcH-HHHHHHHHHH-HHHH---HhCCceEEEEEeeccch
Confidence            356663 55543   3566789999999999874 4554433332 2222   234 7899999999853

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=94.06  E-value=0.23  Score=33.87  Aligned_cols=42  Identities=19%  Similarity=0.174  Sum_probs=30.7

Q ss_pred             CCCcEEEEeeCCCCCCccccc--HHHHHHHHHHhCCcEEEeecCC
Q psy785           56 DDVPMVLVGNKCDLEEERVVG--KEQGASLARAFACTFLETSAKA   98 (112)
Q Consensus        56 ~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~   98 (112)
                      ..+|++.++||.|...... .  .+...+++...+.+++++||.-
T Consensus       205 t~KP~lyvaN~~e~~~~~~-n~~~~~i~~~~~~~~~~vV~~sA~~  248 (372)
T COG0012         205 TAKPMLYVANVSEDDLANL-NEYVKRLKELAAKENAEVVPVSAAI  248 (372)
T ss_pred             hcCCeEEEEECCcccccch-hHHHHHHHHHhhhcCCcEEEeeHHH
Confidence            4589999999999764322 2  3455666677778999999873

>cd03114 ArgK-like The function of this protein family is unkown

Probab=94.04  E-value=0.33  Score=28.73  Aligned_cols=55  Identities=20%  Similarity=0.268  Sum_probs=33.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD   68 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D   68 (112)
                      +-|.||+|.....   ...+..+|-++++..++--+..-   .....+.      ..--+++.||+|
T Consensus        94 ~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~---~~k~~~~------~~~~~~~~~k~~  148 (148)
T cd03114          94 VIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQ---AIKAGIM------EIADIVVVNKAD  148 (148)
T ss_pred             EEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHH---HhhhhHh------hhcCEEEEeCCC
Confidence            4689999955322   34788999999999876333221   1111222      234477899987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PRK10818 cell division inhibitor MinD; Provisional

Probab=93.79  E-value=1.1  Score=28.87  Aligned_cols=66  Identities=8%  Similarity=0.022  Sum_probs=41.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-----CCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-----TDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~~~p~ivv~nK~D~~   70 (112)
                      +.+.|+|+.-...  ....+..+|.++++.+.+ ..++..+...+..+.....     ..+.+..++.|+.+..
T Consensus       116 ~viiD~p~~~~~~--~~~~l~~ad~vivv~~p~-~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~  186 (270)
T PRK10818        116 FIVCDSPAGIETG--ALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG  186 (270)
T ss_pred             EEEEeCCCCccHH--HHHHHHhCCeEEEEcCCC-chHHHhHHHHHHHHHHhhccccccccccceEEEEeccCHh
Confidence            4689998655332  334468899999998876 3456566555555543211     1123457788988753

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=93.56  E-value=1  Score=30.37  Aligned_cols=66  Identities=26%  Similarity=0.217  Sum_probs=40.2

Q ss_pred             cCCEEEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhC--CcEEEeec
Q psy785           23 NGQGFILVYSITAQSTFND-LSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFA--CTFLETSA   96 (112)
Q Consensus        23 ~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa   96 (112)
                      ..|+++-|+|+..-..... +..........      -=+++.||.|+.+...  .+..+...++.+  .+++.+|.
T Consensus       116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~Dlv~~~~--l~~l~~~l~~lnp~A~i~~~~~  184 (323)
T COG0523         116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTDLVDAEE--LEALEARLRKLNPRARIIETSY  184 (323)
T ss_pred             eeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEecccCCCHHH--HHHHHHHHHHhCCCCeEEEccc
Confidence            4689999999876543222 22322222222      3378899999986543  445555566554  47887776

>cd03112 CobW_like The function of this protein family is unkown

Probab=93.49  E-value=0.49  Score=28.22  Aligned_cols=60  Identities=17%  Similarity=0.153  Sum_probs=33.8

Q ss_pred             eEEeCCCcccchhhHHh--------hcccCCEEEEEEeCCChhhH-HHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785            3 EILDTAGTEQFTAMRDL--------YMKNGQGFILVYSITAQSTF-NDLSDLREQILRVKDTDDVPMVLVGNKCDL   69 (112)
Q Consensus         3 ~i~Dt~g~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~   69 (112)
                      -+.||+|..+-......        ..-.+++++.++|....... .....+..++..       -=+++.||+|+
T Consensus        90 I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~-------ad~ivlnk~dl  158 (158)
T cd03112          90 IVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF-------ADRILLNKTDL  158 (158)
T ss_pred             EEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH-------CCEEEEecccC
Confidence            47899996543332222        23358999999997654321 111223333322       22568999985

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=93.47  E-value=0.28  Score=32.22  Aligned_cols=44  Identities=14%  Similarity=0.132  Sum_probs=25.7

Q ss_pred             cCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785           23 NGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE   72 (112)
Q Consensus        23 ~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~   72 (112)
                      ..|+|+++++++... +-.++ ...+.+.     ...++|-|..|+|....
T Consensus       113 RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls-----~~vNvIPvIaKaD~lt~  157 (281)
T PF00735_consen  113 RVHACLYFIPPTGHGLKPLDI-EFMKRLS-----KRVNVIPVIAKADTLTP  157 (281)
T ss_dssp             -EEEEEEEE-TTSSSS-HHHH-HHHHHHT-----TTSEEEEEESTGGGS-H
T ss_pred             CcceEEEEEcCCCccchHHHH-HHHHHhc-----ccccEEeEEecccccCH
Confidence            479999999986531 11122 1222232     45789999999998653

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PRK13849 putative crown gall tumor protein VirC1; Provisional

Probab=93.22  E-value=1.4  Score=28.13  Aligned_cols=64  Identities=8%  Similarity=0.226  Sum_probs=40.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCCcEEEEeeCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK--DTDDVPMVLVGNKCD   68 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~p~ivv~nK~D   68 (112)
                      +.|+||||...  ......+..+|.+++.+..+. .++......+..+.+..  ...++|..++.|.++
T Consensus        86 ~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~-~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~  151 (231)
T PRK13849         86 YALADTHGGSS--ELNNTIIASSNLLLIPTMLTP-LDIDEALSTYRYVIELLLSENLAIPTAILRQRVP  151 (231)
T ss_pred             EEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcH-HHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence            46899998653  444556778999998887754 34444434433333221  124678889999986

>TIGR00959 ffh signal recognition particle protein

Probab=92.90  E-value=2.3  Score=29.83  Aligned_cols=84  Identities=17%  Similarity=0.097  Sum_probs=47.3

Q ss_pred             ceEEeCCCcccchh-hHHh-----hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc
Q psy785            2 LEILDTAGTEQFTA-MRDL-----YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV   75 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~-~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~   75 (112)
                      +-|.||||...... +...     ..-+++.+++|+|.+...   ....+...+.+..   ++ .=++.||.|-..... 
T Consensus       185 vVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~i-~giIlTKlD~~~~~G-  256 (428)
T TIGR00959       185 VVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---GL-TGVVLTKLDGDARGG-  256 (428)
T ss_pred             EEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---CC-CEEEEeCccCccccc-
Confidence            46899999643321 1111     123578999999987542   2223333333221   22 344589999643222 


Q ss_pred             cHHHHHHHHHHhCCcEEEeec
Q psy785           76 GKEQGASLARAFACTFLETSA   96 (112)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~Sa   96 (112)
                         .+.......+.|+.+++.
T Consensus       257 ---~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       257 ---AALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             ---HHHHHHHHHCcCEEEEeC
Confidence               245566667888877765

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=92.77  E-value=1.7  Score=28.03  Aligned_cols=66  Identities=12%  Similarity=0.103  Sum_probs=37.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcE-EEEeeCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM-VLVGNKCDL   69 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~nK~D~   69 (112)
                      +-|+||+|...... ....+..+|.++++...+ ..++..+......+.......+.++ -++.|+.+.
T Consensus       118 ~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~  184 (267)
T cd02032         118 VILFDVLGDVVCGG-FAAPLNYADYALIVTDND-FDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK  184 (267)
T ss_pred             EEEEeCCCCccccc-chhhhhhcCEEEEEecCC-cccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence            45889987543221 122367899999988764 3444444444333332211234553 367899874

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=92.70  E-value=2.5  Score=29.74  Aligned_cols=84  Identities=13%  Similarity=0.044  Sum_probs=46.5

Q ss_pred             ceEEeCCCcccchh-hH---Hh--hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc
Q psy785            2 LEILDTAGTEQFTA-MR---DL--YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV   75 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~-~~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~   75 (112)
                      +-++||||...... +.   ..  ....+|.+++|+|.+...   ...+....+.+   .-+ ..-+|.||.|-....  
T Consensus       178 vVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~---~l~-i~gvIlTKlD~~a~~--  248 (437)
T PRK00771        178 VIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHE---AVG-IGGIIITKLDGTAKG--  248 (437)
T ss_pred             EEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHh---cCC-CCEEEEecccCCCcc--
Confidence            46899999765432 11   11  134689999999986642   11122222221   111 234568999964322  


Q ss_pred             cHHHHHHHHHHhCCcEEEeec
Q psy785           76 GKEQGASLARAFACTFLETSA   96 (112)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~Sa   96 (112)
                        -.+.......+.|+.+++.
T Consensus       249 --G~~ls~~~~~~~Pi~fig~  267 (437)
T PRK00771        249 --GGALSAVAETGAPIKFIGT  267 (437)
T ss_pred             --cHHHHHHHHHCcCEEEEec
Confidence              2233455566888877765

>TIGR01968 minD_bact septum site-determining protein MinD

Probab=92.56  E-value=1.8  Score=27.60  Aligned_cols=62  Identities=13%  Similarity=-0.014  Sum_probs=40.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL   69 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~   69 (112)
                      +-++|+|+.-..  .....+..+|.++++...+ ..++..+...+..+....   ..++.++.|+.+.
T Consensus       114 ~viiD~p~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~---~~~~~iviN~~~~  175 (261)
T TIGR01968       114 YVIIDCPAGIES--GFRNAVAPADEAIVVTTPE-VSAVRDADRVIGLLEAKG---IEKIHLIVNRLRP  175 (261)
T ss_pred             EEEEeCCCCcCH--HHHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHHHcC---CCceEEEEeCcCc
Confidence            468999975432  2334567899999998875 456666666555554432   2367788899874

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.

>CHL00175 minD septum-site determining protein; Validated

Probab=92.54  E-value=1.9  Score=28.03  Aligned_cols=62  Identities=11%  Similarity=0.006  Sum_probs=39.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL   69 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~   69 (112)
                      +-++|||+.-.  ......+..+|.++++.+.+ ..++.........+.+.. .  ...-++.|+.+-
T Consensus       129 ~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~-~~si~~~~~~~~~l~~~~-~--~~~~lvvN~~~~  190 (281)
T CHL00175        129 YILIDCPAGID--VGFINAIAPAQEAIVVTTPE-ITAIRDADRVAGLLEANG-I--YNVKLLVNRVRP  190 (281)
T ss_pred             EEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCC-hHHHHHHHHHHHHHHHcC-C--CceEEEEeccCh
Confidence            46899997543  23334457789999988865 456666655555555422 1  245677899874

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=92.47  E-value=0.92  Score=33.73  Aligned_cols=70  Identities=13%  Similarity=0.099  Sum_probs=39.1

Q ss_pred             ceEEeCCCcccch-------hh---HHhhcc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCC
Q psy785            2 LEILDTAGTEQFT-------AM---RDLYMK--NGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVPMVLVGNKCD   68 (112)
Q Consensus         2 ~~i~Dt~g~~~~~-------~~---~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D   68 (112)
                      +.++||||.....       .+   ...++.  ++|++++|..+........-..++..+.+.-+. .-.-.|||.++.|
T Consensus       168 L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD  247 (763)
T TIGR00993       168 IRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAA  247 (763)
T ss_pred             EEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCc
Confidence            6899999966431       11   111333  589999998765332211111344444443332 1245788889998


Q ss_pred             CCC
Q psy785           69 LEE   71 (112)
Q Consensus        69 ~~~   71 (112)
                      ..+
T Consensus       248 ~lp  250 (763)
T TIGR00993       248 SAP  250 (763)
T ss_pred             cCC
Confidence            764

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=92.41  E-value=1.8  Score=30.38  Aligned_cols=84  Identities=12%  Similarity=0.025  Sum_probs=45.4

Q ss_pred             ceEEeCCCcccchh-hHHh---h--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc
Q psy785            2 LEILDTAGTEQFTA-MRDL---Y--MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV   75 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~   75 (112)
                      +-|+||||...... +...   +  ..+++-+++|+|.+....-..   ....+.+    .--+.-++.||.|-..... 
T Consensus       185 vViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~---~a~~F~~----~~~~~g~IlTKlD~~argG-  256 (429)
T TIGR01425       185 IIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA---QAKAFKD----SVDVGSVIITKLDGHAKGG-  256 (429)
T ss_pred             EEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH---HHHHHHh----ccCCcEEEEECccCCCCcc-
Confidence            46899999654321 1111   1  235788999999865432221   1122222    1135667799999753221 


Q ss_pred             cHHHHHHHHHHhCCcEEEeec
Q psy785           76 GKEQGASLARAFACTFLETSA   96 (112)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~Sa   96 (112)
                         .+.......+.|+.+++.
T Consensus       257 ---~aLs~~~~t~~PI~fig~  274 (429)
T TIGR01425       257 ---GALSAVAATKSPIIFIGT  274 (429)
T ss_pred             ---HHhhhHHHHCCCeEEEcC
Confidence               122344455777766654

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases

Probab=92.25  E-value=1.6  Score=26.54  Aligned_cols=67  Identities=12%  Similarity=0.098  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhh
Q psy785           39 FNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECT  109 (112)
Q Consensus        39 ~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l  109 (112)
                      ...+..|+.++.+..  ...-+++|.|-.-...  ......++.+.+.++++++.-+++...+..++.+.+
T Consensus        61 ~~~~~~~~~~l~~~~--~~~~v~IvSNsaGs~~--d~~~~~a~~~~~~lgIpvl~h~~kKP~~~~~i~~~~  127 (168)
T PF09419_consen   61 PPEYAEWLNELKKQF--GKDRVLIVSNSAGSSD--DPDGERAEALEKALGIPVLRHRAKKPGCFREILKYF  127 (168)
T ss_pred             CHHHHHHHHHHHHHC--CCCeEEEEECCCCccc--CccHHHHHHHHHhhCCcEEEeCCCCCccHHHHHHHH
Confidence            356778888887642  1124888888765433  234567778888899999888888887777766654

All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.

>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases

Probab=92.15  E-value=0.62  Score=28.22  Aligned_cols=66  Identities=17%  Similarity=0.057  Sum_probs=45.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~   71 (112)
                      +-+.|||+.....  ....+..+|.++++++.+. .++..+..+...+..... .....-+|.||.+..+
T Consensus        97 ~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~-~~i~~~~~~~~~l~~~~~-~~~~~~vv~N~v~~~~  162 (195)
T PF01656_consen   97 YIIIDTPPGLSDP--VRNALAAADYVIVPIEPDP-SSIEGAERLIELLKRLGK-KLKIIGVVINRVDPGN  162 (195)
T ss_dssp             EEEEEECSSSSHH--HHHHHHTSSEEEEEEESSH-HHHHHHHHHHHHHHHHTH-TEEEEEEEEEEETSCC
T ss_pred             ceeecccccccHH--HHHHHHhCceeeeecCCcH-HHHHHHHHHHHHHHHhcc-ccceEEEEEeeeCCCc
Confidence            4689999755433  4556779999999999864 557777777766665421 1125677899998653

These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....

>KOG3929|consensus

Probab=91.77  E-value=0.65  Score=30.53  Aligned_cols=16  Identities=44%  Similarity=0.656  Sum_probs=13.5

Q ss_pred             CCCcEEEEeeCCCCCC
Q psy785           56 DDVPMVLVGNKCDLEE   71 (112)
Q Consensus        56 ~~~p~ivv~nK~D~~~   71 (112)
                      ..+|+++||.|+|.-.
T Consensus       189 ~P~PV~IVgsKYDvFq  204 (363)
T KOG3929|consen  189 FPVPVVIVGSKYDVFQ  204 (363)
T ss_pred             CCCceEEeccchhhhc
Confidence            3589999999999854

>PF14331 ImcF-related_N: ImcF-related N-terminal domain

Probab=91.62  E-value=0.86  Score=29.73  Aligned_cols=50  Identities=26%  Similarity=0.402  Sum_probs=30.5

Q ss_pred             cCCEEEEEEeCCCh-----h--hHHHH-HHHHHHHHhhcC--CCCCcEEEEeeCCCCCCc
Q psy785           23 NGQGFILVYSITAQ-----S--TFNDL-SDLREQILRVKD--TDDVPMVLVGNKCDLEEE   72 (112)
Q Consensus        23 ~~d~~i~v~d~~~~-----~--s~~~~-~~~~~~i~~~~~--~~~~p~ivv~nK~D~~~~   72 (112)
                      ..+|+|+++|+.+-     .  .+... ..+...+.+...  ....|+.++.||+|+.+.
T Consensus        25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~G   84 (266)
T PF14331_consen   25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLPG   84 (266)
T ss_pred             CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCcccC
Confidence            57999999997431     1  12221 223333333222  157999999999998753

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=91.11  E-value=2.1  Score=25.57  Aligned_cols=84  Identities=17%  Similarity=0.233  Sum_probs=50.2

Q ss_pred             ceEEeCCCcccchhhHHhhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCc-----c
Q psy785            2 LEILDTAGTEQFTAMRDLYM--KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEE-----R   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~-----~   73 (112)
                      +-|.|||+.-.  .......  ..+|.++++...+ +.+......+...+.+.    +.+ .-++.|+.+...+     .
T Consensus        70 ~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~----~~~~~gvv~N~~~~~~~~~~~~~  142 (169)
T cd02037          70 YLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKV----NIPILGVVENMSYFVCPHCGKKI  142 (169)
T ss_pred             EEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhc----CCCeEEEEEcCCcccCCCCCCcc
Confidence            45899997532  2112222  5789999999876 45667777777776653    344 3467899874211     1


Q ss_pred             cc-cHHHHHHHHHHhCCcEE
Q psy785           74 VV-GKEQGASLARAFACTFL   92 (112)
Q Consensus        74 ~~-~~~~~~~~~~~~~~~~~   92 (112)
                      .. .....+++++.++.+++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~  162 (169)
T cd02037         143 YIFGKGGGEKLAEELGVPLL  162 (169)
T ss_pred             cccCCccHHHHHHHcCCCEE
Confidence            11 12355677777766554

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>KOG2485|consensus

Probab=91.04  E-value=0.72  Score=30.92  Aligned_cols=50  Identities=18%  Similarity=0.084  Sum_probs=33.3

Q ss_pred             hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785           16 MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE   72 (112)
Q Consensus        16 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~   72 (112)
                      .....++..|.+|=+=|+--|-|-.+.  .   +.+..  ..+|.|+|.||+|+-+.
T Consensus        39 ~i~~~l~~~D~iiEvrDaRiPLssrn~--~---~~~~~--~~k~riiVlNK~DLad~   88 (335)
T KOG2485|consen   39 AIQNRLPLVDCIIEVRDARIPLSSRNE--L---FQDFL--PPKPRIIVLNKMDLADP   88 (335)
T ss_pred             HHHhhcccccEEEEeeccccCCccccH--H---HHHhc--CCCceEEEEecccccCc
Confidence            344567889999999998555433221  1   22222  35899999999999753

>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein

Probab=90.74  E-value=3.1  Score=26.84  Aligned_cols=66  Identities=12%  Similarity=0.174  Sum_probs=36.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcE-EEEeeCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM-VLVGNKCDL   69 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~nK~D~   69 (112)
                      +-++||+|.-..... ...+..+|.++++... +..++..+......+.+.....++++ .+|.|+.+.
T Consensus       118 ~ViID~~~~~~~~~~-~~~l~aAD~vlip~~~-~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~  184 (268)
T TIGR01281       118 VILFDVLGDVVCGGF-ATPLQYADYALVVAAN-DFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA  184 (268)
T ss_pred             EEEEecCCccccCcc-ccchhhcCEEEEEecC-chhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence            457899864322111 1236788999998765 34455554444443433221234553 467899874

The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.82  E-value=2  Score=33.93  Aligned_cols=68  Identities=24%  Similarity=0.213  Sum_probs=40.7

Q ss_pred             eEEeCCCcccc--------hhhHHhh---------cccCCEEEEEEeCCChh----hH-----HHHHHHHHHHHhhcCCC
Q psy785            3 EILDTAGTEQF--------TAMRDLY---------MKNGQGFILVYSITAQS----TF-----NDLSDLREQILRVKDTD   56 (112)
Q Consensus         3 ~i~Dt~g~~~~--------~~~~~~~---------~~~~d~~i~v~d~~~~~----s~-----~~~~~~~~~i~~~~~~~   56 (112)
                      -++||+|....        ...|..+         .+..+|+|+.+|+.+--    ..     ..++.-+.++.+.. ..
T Consensus       177 VlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL-~~  255 (1188)
T COG3523         177 VLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL-HA  255 (1188)
T ss_pred             EEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh-cc
Confidence            37899983321        2344433         34689999999985421    11     11222334443322 25


Q ss_pred             CCcEEEEeeCCCCCC
Q psy785           57 DVPMVLVGNKCDLEE   71 (112)
Q Consensus        57 ~~p~ivv~nK~D~~~   71 (112)
                      ..|+.++.||.|+..
T Consensus       256 ~~PVYl~lTk~Dll~  270 (1188)
T COG3523         256 RLPVYLVLTKADLLP  270 (1188)
T ss_pred             CCceEEEEecccccc
Confidence            799999999999875

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=89.59  E-value=3  Score=24.95  Aligned_cols=82  Identities=13%  Similarity=0.019  Sum_probs=44.0

Q ss_pred             ceEEeCCCcccchh----hHHhh--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc
Q psy785            2 LEILDTAGTEQFTA----MRDLY--MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV   75 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~   75 (112)
                      +-+.||+|...+..    .....  ....+.+++|++.......   ..+...+.+.   .+ ..-++.||.|...... 
T Consensus        85 ~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~---~~~~~~~~~~---~~-~~~viltk~D~~~~~g-  156 (173)
T cd03115          85 VVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA---VNQAKAFNEA---LG-ITGVILTKLDGDARGG-  156 (173)
T ss_pred             EEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH---HHHHHHHHhh---CC-CCEEEEECCcCCCCcc-
Confidence            45799999643211    11111  2348999999998654322   2233333332   22 3456679999754221 


Q ss_pred             cHHHHHHHHHHhCCcEEEe
Q psy785           76 GKEQGASLARAFACTFLET   94 (112)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~   94 (112)
                         .....+...++|+..+
T Consensus       157 ---~~~~~~~~~~~p~~~~  172 (173)
T cd03115         157 ---AALSIRAVTGKPIKFI  172 (173)
T ss_pred             ---hhhhhHHHHCcCeEee
Confidence               2223556667766543

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase

Probab=89.40  E-value=4.1  Score=26.19  Aligned_cols=64  Identities=17%  Similarity=0.193  Sum_probs=34.8

Q ss_pred             ceEEeCCCcccchhhH-HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEeeC
Q psy785            2 LEILDTAGTEQFTAMR-DLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV-LVGNK   66 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK   66 (112)
                      +-|+||+|......+. .....-+|.++++...+ +.++..+......+.......+.++. ++.|+
T Consensus       119 ~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~-~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~  184 (270)
T cd02040         119 FVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGE-MMALYAANNICKGILKYAKSGGVRLGGLICNS  184 (270)
T ss_pred             EEEEecccCcccCCcccccccccccEEEEEecCc-hHHHHHHHHHHHHHHHhCccCCCceEEEEEec
Confidence            4688998754322221 12223589999998875 44665555555444443322345554 44455

Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.

>PRK10867 signal recognition particle protein; Provisional

Probab=89.20  E-value=6.1  Score=27.88  Aligned_cols=84  Identities=15%  Similarity=0.099  Sum_probs=45.5

Q ss_pred             ceEEeCCCcccchh-hHHh---h--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc
Q psy785            2 LEILDTAGTEQFTA-MRDL---Y--MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV   75 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~   75 (112)
                      +-|.||||.-.... +...   .  .-.++.+++|+|.+...   +..+....+.+.   -++ .=+|.||.|-..... 
T Consensus       186 vVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~---~~i-~giIlTKlD~~~rgG-  257 (433)
T PRK10867        186 VVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEA---LGL-TGVILTKLDGDARGG-  257 (433)
T ss_pred             EEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhh---CCC-CEEEEeCccCccccc-
Confidence            46899999653311 1111   1  22678889999986532   222222223221   122 234569999643222 


Q ss_pred             cHHHHHHHHHHhCCcEEEeec
Q psy785           76 GKEQGASLARAFACTFLETSA   96 (112)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~Sa   96 (112)
                         .+.......+.|+.+++.
T Consensus       258 ---~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        258 ---AALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             ---HHHHHHHHHCcCEEEEeC
Confidence               244556667888877765

>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins

Probab=88.62  E-value=0.89  Score=25.64  Aligned_cols=32  Identities=31%  Similarity=0.353  Sum_probs=18.1

Q ss_pred             EeeCCCCCCcccccHHHHHHHHHHhC-CcEEEeecCC
Q psy785           63 VGNKCDLEEERVVGKEQGASLARAFA-CTFLETSAKA   98 (112)
Q Consensus        63 v~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~   98 (112)
                      ++||+|+..    ..+...++.+++. .+++++||..
T Consensus         1 AaNK~D~~~----a~~ni~kl~~~~~~~~vVp~SA~a   33 (109)
T PF08438_consen    1 AANKADLPA----ADENIEKLKEKYPDEPVVPTSAAA   33 (109)
T ss_dssp             EEE-GGG-S-----HHHHHHHHHHHTT-EEEEE-HHH
T ss_pred             CCccccccc----cHhHHHHHHHhCCCCceeeccHHH
Confidence            589999743    3445555666664 5888888863

; PDB: 1WXQ_A.

>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate

Probab=88.47  E-value=3.7  Score=29.54  Aligned_cols=52  Identities=17%  Similarity=0.047  Sum_probs=34.9

Q ss_pred             CCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCC--CCChhHHhhhh
Q psy785           56 DDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKA--KVNSWLCVECT  109 (112)
Q Consensus        56 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~v~~~~~~l  109 (112)
                      .++|++|..|+.....+.  ..+..+++|.+.|.+...+..-.  |.|-.++-+.+
T Consensus       355 fg~p~VVaiN~F~~Dt~~--Ei~~v~~~~~~~g~~~~~~~~~~~GG~Ga~eLA~~V  408 (524)
T cd00477         355 FGVPVVVAINKFSTDTDA--ELALVRKLAEEAGAFVAVSEHWAEGGKGAVELAEAV  408 (524)
T ss_pred             cCCCeEEEecCCCCCCHH--HHHHHHHHHHHcCCCEEEehhhhhhhhhHHHHHHHH
Confidence            679999999999754333  34567888988898777654333  44555554443

FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.

>KOG0781|consensus

Probab=87.77  E-value=7.7  Score=27.98  Aligned_cols=91  Identities=12%  Similarity=0.156  Sum_probs=52.3

Q ss_pred             ceEEeCCCcccc-hhhHHhh-----cccCCEEEEEEeCC-ChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc
Q psy785            2 LEILDTAGTEQF-TAMRDLY-----MKNGQGFILVYSIT-AQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV   74 (112)
Q Consensus         2 ~~i~Dt~g~~~~-~~~~~~~-----~~~~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~   74 (112)
                      +-+.||||...- ..+.++.     ....|.+++|-..- .-++.+.+..+...+..+.....+. =++.+|.|...++.
T Consensus       469 VvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id-~~~ltk~dtv~d~v  547 (587)
T KOG0781|consen  469 VVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLID-GILLTKFDTVDDKV  547 (587)
T ss_pred             EEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccc-eEEEEeccchhhHH
Confidence            468999996532 2222221     45789999997653 2367888877777776654222222 34689999865332


Q ss_pred             ccHHHHHHHHHHhCCcEEEeec
Q psy785           75 VGKEQGASLARAFACTFLETSA   96 (112)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~Sa   96 (112)
                         -.+......-+.|++++-.
T Consensus       548 ---g~~~~m~y~~~~pi~fvg~  566 (587)
T KOG0781|consen  548 ---GAAVSMVYITGKPILFVGV  566 (587)
T ss_pred             ---HHHhhheeecCCceEEEec
Confidence               1112222333667777643

>KOG1547|consensus

Probab=87.07  E-value=2.2  Score=27.89  Aligned_cols=66  Identities=15%  Similarity=0.093  Sum_probs=31.0

Q ss_pred             cCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCC--cccccHHHHHHHHHHhCCcEEEe
Q psy785           23 NGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEE--ERVVGKEQGASLARAFACTFLET   94 (112)
Q Consensus        23 ~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~   94 (112)
                      .+++|++.+..+.. ++.-+. ..++.+-+     -.-++-|.-|+|...  ++..-.+.+++-...+++.+++-
T Consensus       155 RVHcclyFi~ptGh-sLrplDieflkrLt~-----vvNvvPVIakaDtlTleEr~~FkqrI~~el~~~~i~vYPq  223 (336)
T KOG1547|consen  155 RVHCCLYFIPPTGH-SLRPLDIEFLKRLTE-----VVNVVPVIAKADTLTLEERSAFKQRIRKELEKHGIDVYPQ  223 (336)
T ss_pred             eEEEEEEEeCCCCC-ccCcccHHHHHHHhh-----hheeeeeEeecccccHHHHHHHHHHHHHHHHhcCcccccc
Confidence            46888888887653 222111 12222322     134555677888542  22222223333334445555443

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=87.04  E-value=6.7  Score=27.86  Aligned_cols=61  Identities=13%  Similarity=0.101  Sum_probs=40.7

Q ss_pred             HHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCC--CChhHHhhhh
Q psy785           43 SDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK--VNSWLCVECT  109 (112)
Q Consensus        43 ~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--~~v~~~~~~l  109 (112)
                      .+-..++++    -++|++++.|-.+=.  ...+.+...++..+++.+++++++.+-  ..|..+++.+
T Consensus       170 ervI~ELk~----igKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~v  232 (492)
T PF09547_consen  170 ERVIEELKE----IGKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEV  232 (492)
T ss_pred             HHHHHHHHH----hCCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHH
Confidence            344555555    568999999988633  223345566777889999999988653  3555555543

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=86.85  E-value=6.3  Score=25.37  Aligned_cols=99  Identities=7%  Similarity=0.073  Sum_probs=56.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFND--LSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQ   79 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~   79 (112)
                      +-|.||.|....  +....+..+|.+++=+-.+..+.-+.  ...|+.++.+. ....+|.-++.+++.... .......
T Consensus        86 ~VlvDleG~as~--~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~-~~~~ip~~Vl~Tr~~~~~-~~~~~~~  161 (231)
T PF07015_consen   86 FVLVDLEGGASE--LNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKA-ERRDIPAAVLFTRVPAAR-LTRAQRI  161 (231)
T ss_pred             EEEEeCCCCCch--hHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHh-hCCCCCeeEEEecCCcch-hhHHHHH
Confidence            468999885532  23445678999999888876543332  23455555432 235689999999987431 1111112


Q ss_pred             HHHHHHHhCCcEEEeecCCCCChhHHh
Q psy785           80 GASLARAFACTFLETSAKAKVNSWLCV  106 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~  106 (112)
                      ..+...  ++|++.+......-..++|
T Consensus       162 ~~e~~~--~lpvl~t~l~eR~Af~~m~  186 (231)
T PF07015_consen  162 ISEQLE--SLPVLDTELHERDAFRAMF  186 (231)
T ss_pred             HHHHHh--cCCccccccccHHHHHHHH
Confidence            222222  5777777666554433333

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>CHL00072 chlL photochlorophyllide reductase subunit L

Probab=84.98  E-value=8.9  Score=25.37  Aligned_cols=66  Identities=12%  Similarity=0.149  Sum_probs=37.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcE-EEEeeCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM-VLVGNKCDL   69 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~nK~D~   69 (112)
                      +-++||+|.-....+. ..+..||.++++.+.+ +.++..+...+..+.......+.+. -++.|+.+.
T Consensus       118 ~IiIDt~~~l~~~a~~-aal~~AD~viIp~~p~-~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~  184 (290)
T CHL00072        118 IILFDVLGDVVCGGFA-APLNYADYCIIITDNG-FDALFAANRIAASVREKARTHPLRLAGLVGNRTSK  184 (290)
T ss_pred             EEEEecCCcceechhh-hhhhcCCEEEEEecCC-HHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc
Confidence            4578998753222221 2356799999988764 4555555554444433222233433 377899873

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=84.38  E-value=2.4  Score=25.72  Aligned_cols=58  Identities=21%  Similarity=0.244  Sum_probs=31.6

Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHh
Q psy785           23 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAF   87 (112)
Q Consensus        23 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~   87 (112)
                      ..+.++.|+|..+..........+....+.      -=+++.||+|+.+... ..+...+..++.
T Consensus       113 ~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~------ADvIvlnK~D~~~~~~-~i~~~~~~ir~l  170 (178)
T PF02492_consen  113 RLDSIITVVDATNFDELENIPELLREQIAF------ADVIVLNKIDLVSDEQ-KIERVREMIREL  170 (178)
T ss_dssp             SESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHHHH---HHHHHHHHHHH
T ss_pred             cccceeEEeccccccccccchhhhhhcchh------cCEEEEeccccCChhh-HHHHHHHHHHHH
Confidence            468999999997654333333333222222      2377899999875331 124445555554

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=83.86  E-value=15  Score=26.96  Aligned_cols=86  Identities=20%  Similarity=0.190  Sum_probs=45.1

Q ss_pred             ceEEeCCCcccchhh-HHh--hc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc
Q psy785            2 LEILDTAGTEQFTAM-RDL--YM--KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG   76 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~-~~~--~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~   76 (112)
                      +-|+||+|....... ...  .+  ......++|++.+.  +...+...+..+..     ..+.-+|.||.|...    .
T Consensus       431 LVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~----~  499 (559)
T PRK12727        431 LVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG----R  499 (559)
T ss_pred             EEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc----c
Confidence            568999996433211 100  01  11234566677653  23333333333322     136678899999742    1


Q ss_pred             HHHHHHHHHHhCCcEEEeecCC
Q psy785           77 KEQGASLARAFACTFLETSAKA   98 (112)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~Sa~~   98 (112)
                      .-.........+.++.+++.-.
T Consensus       500 lG~aLsv~~~~~LPI~yvt~GQ  521 (559)
T PRK12727        500 FGSALSVVVDHQMPITWVTDGQ  521 (559)
T ss_pred             hhHHHHHHHHhCCCEEEEeCCC
Confidence            2344555666788877766433

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=83.61  E-value=5.2  Score=21.62  Aligned_cols=43  Identities=14%  Similarity=0.156  Sum_probs=29.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLRE   47 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~   47 (112)
                      +-++|+|+....  .....+..+|.++++.+.+ ..++..+..+++
T Consensus        42 ~viiD~p~~~~~--~~~~~l~~ad~viv~~~~~-~~s~~~~~~~~~   84 (104)
T cd02042          42 YIIIDTPPSLGL--LTRNALAAADLVLIPVQPS-PLDLDGLEKLLE   84 (104)
T ss_pred             EEEEeCcCCCCH--HHHHHHHHCCEEEEeccCC-HHHHHHHHHHHH
Confidence            458999975432  2336678899999999875 456666555544

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>KOG1486|consensus

Probab=83.05  E-value=3.2  Score=27.40  Aligned_cols=47  Identities=26%  Similarity=0.111  Sum_probs=35.0

Q ss_pred             CcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           58 VPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        58 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++-|-||+|..     +.++..++++.-+  -+-+|+..+.|++.+++.+++
T Consensus       239 ~~ClYvYnKID~v-----s~eevdrlAr~Pn--svViSC~m~lnld~lle~iWe  285 (364)
T KOG1486|consen  239 IKCLYVYNKIDQV-----SIEEVDRLARQPN--SVVISCNMKLNLDRLLERIWE  285 (364)
T ss_pred             EEEEEEeecccee-----cHHHHHHHhcCCC--cEEEEeccccCHHHHHHHHHH
Confidence            6889999999964     4556666666433  455688888999999998875

>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]

Probab=82.92  E-value=13  Score=26.70  Aligned_cols=88  Identities=14%  Similarity=0.077  Sum_probs=50.3

Q ss_pred             cccCCEEEEEEeCCC-------------hhhHHHHHHHHHHHHhhc---CCCCCcEEEEeeCCCCCCcccccHHHHHHHH
Q psy785           21 MKNGQGFILVYSITA-------------QSTFNDLSDLREQILRVK---DTDDVPMVLVGNKCDLEEERVVGKEQGASLA   84 (112)
Q Consensus        21 ~~~~d~~i~v~d~~~-------------~~s~~~~~~~~~~i~~~~---~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~   84 (112)
                      --..|++++|..+--             .+..+.++.=+..+.+|.   ...++|++|..||.-...  +.....+.+++
T Consensus       317 gl~PdavVlVATvRALK~hGG~~~~~l~~Env~avk~G~aNL~~Hi~Nikkfgvp~VVAIN~F~tDt--~~Ei~~i~~~~  394 (554)
T COG2759         317 GLKPDAVVLVATVRALKMHGGVPKEDLTEENVDAVKKGFANLLKHIENIKKFGVPVVVAINKFPTDT--EAEIAAIEKLC  394 (554)
T ss_pred             CCCCCeEEEeeehHHHHHcCCCChHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccCCCCC--HHHHHHHHHHH
Confidence            346789999876510             122222322222222222   136899999999997443  22345677888


Q ss_pred             HHhCCcEEEee--cCCCCChhHHhhhhc
Q psy785           85 RAFACTFLETS--AKAKVNSWLCVECTN  110 (112)
Q Consensus        85 ~~~~~~~~~~S--a~~~~~v~~~~~~l~  110 (112)
                      .+.+.++..+.  ++-|.|-.++-++++
T Consensus       395 ~~~gv~~~ls~vwakGg~Gg~eLA~kVv  422 (554)
T COG2759         395 EEHGVEVALSEVWAKGGEGGIELAKKVV  422 (554)
T ss_pred             HHcCCceeehhhhhccCccHHHHHHHHH
Confidence            88887665433  455666666655543

>TIGR01969 minD_arch cell division ATPase MinD, archaeal

Probab=82.75  E-value=9.7  Score=24.07  Aligned_cols=61  Identities=11%  Similarity=0.063  Sum_probs=36.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDL   69 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~   69 (112)
                      +-++|||+....  .....+..+|.++++.+.+. .++............    .+.+ ..++.|+.+.
T Consensus       111 ~VIiD~p~~~~~--~~~~~l~~ad~vliv~~~~~-~s~~~~~~~~~~~~~----~~~~~~~vv~N~~~~  172 (251)
T TIGR01969       111 FLLIDAPAGLER--DAVTALAAADELLLVVNPEI-SSITDALKTKIVAEK----LGTAILGVVLNRVTR  172 (251)
T ss_pred             EEEEeCCCccCH--HHHHHHHhCCeEEEEECCCC-chHHHHHHHHHHHHh----cCCceEEEEEECCCc
Confidence            468999975432  23344568999999998754 344443332222222    2344 5688999975

This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.

>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6

Probab=82.59  E-value=1.3  Score=32.02  Aligned_cols=85  Identities=14%  Similarity=0.115  Sum_probs=40.9

Q ss_pred             ccCCEEEEEEeC-------------CChhhHHHHHHHHHHHHhhcC---CCCCcEEEEeeCCCCCCcccccHHHHHHHHH
Q psy785           22 KNGQGFILVYSI-------------TAQSTFNDLSDLREQILRVKD---TDDVPMVLVGNKCDLEEERVVGKEQGASLAR   85 (112)
Q Consensus        22 ~~~d~~i~v~d~-------------~~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~   85 (112)
                      -..|++++|..+             -..+..+.++.=+..+.+|.+   ..++|++|..|+.....+.+  .+...++|+
T Consensus       320 l~P~~~VlVaTvRALK~HGG~~~~~l~~eNl~al~~G~~NL~rHIeNik~fGvpvVVAIN~F~tDT~aE--i~~I~~~~~  397 (557)
T PF01268_consen  320 LKPDAVVLVATVRALKMHGGVAKDDLNEENLEALEKGFANLERHIENIKKFGVPVVVAINRFPTDTDAE--IELIRELCE  397 (557)
T ss_dssp             ---SEEEEEEEHHHHHHHTT--GGGTTS--HHHHHHHHHHHHHHHHHHHCTT--EEEEEE--TTS-HHH--HHHHHHHCC
T ss_pred             cCcceEEEeeechHHHhhcCCCccccCccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCCHHH--HHHHHHHHH
Confidence            357899999764             111223333332233333221   26899999999997643332  355677888


Q ss_pred             HhCCcEEEeec--CCCCChhHHhhh
Q psy785           86 AFACTFLETSA--KAKVNSWLCVEC  108 (112)
Q Consensus        86 ~~~~~~~~~Sa--~~~~~v~~~~~~  108 (112)
                      +.|.++..+..  +=|.|-.++.+.
T Consensus       398 ~~Gv~~avs~~wa~GGeGa~eLA~~  422 (557)
T PF01268_consen  398 ELGVRAAVSEHWAKGGEGAVELAEA  422 (557)
T ss_dssp             CCCEEEEEC-HHHHGGGGCHHHHHH
T ss_pred             hCCCCEEEechhhcccccHHHHHHH
Confidence            88887554442  334454555444

3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....

>TIGR01007 eps_fam capsular exopolysaccharide family

Probab=82.29  E-value=9.3  Score=23.54  Aligned_cols=63  Identities=22%  Similarity=0.202  Sum_probs=36.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCC-cEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDV-PMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-p~ivv~nK~D~~   70 (112)
                      +-|.|||...... ......+.+|.++++.+... .+...+..-...+.+    .+. ..-+|.||.+..
T Consensus       130 ~ViiD~pp~~~~~-~~~~~~~~~D~vilV~~~~~-~~~~~~~~~~~~l~~----~~~~~~gvVlN~~~~~  193 (204)
T TIGR01007       130 YIIIDTPPIGTVT-DAAIIARACDASILVTDAGE-IKKRDVQKAKEQLEQ----TGSNFLGVVLNKVDIS  193 (204)
T ss_pred             EEEEeCCCccccc-hHHHHHHhCCeEEEEEECCC-CCHHHHHHHHHHHHh----CCCCEEEEEEeCcccc
Confidence            4578998632211 12234567999999999753 344444444444433    233 455688999864

This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=82.06  E-value=9.8  Score=23.66  Aligned_cols=83  Identities=19%  Similarity=0.045  Sum_probs=45.6

Q ss_pred             ceEEeCCCcccchh----hHHhh--cccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc
Q psy785            2 LEILDTAGTEQFTA----MRDLY--MKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV   74 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~   74 (112)
                      +-++||||...+..    ....+  ....+-+.+|.+.+... ..+.....    .+.   .+ +-=++.+|.|....  
T Consensus        86 ~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~----~~~---~~-~~~lIlTKlDet~~--  155 (196)
T PF00448_consen   86 LVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF----YEA---FG-IDGLILTKLDETAR--  155 (196)
T ss_dssp             EEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH----HHH---SS-TCEEEEESTTSSST--
T ss_pred             EEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH----hhc---cc-CceEEEEeecCCCC--
Confidence            46899999654322    11111  12578889999987643 23322222    221   12 23455999996432  


Q ss_pred             ccHHHHHHHHHHhCCcEEEeec
Q psy785           75 VGKEQGASLARAFACTFLETSA   96 (112)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~Sa   96 (112)
                        .-.....+...+.|+-.+|-
T Consensus       156 --~G~~l~~~~~~~~Pi~~it~  175 (196)
T PF00448_consen  156 --LGALLSLAYESGLPISYITT  175 (196)
T ss_dssp             --THHHHHHHHHHTSEEEEEES
T ss_pred             --cccceeHHHHhCCCeEEEEC
Confidence              23345666677888877664

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PTZ00386 formyl tetrahydrofolate synthetase; Provisional

Probab=81.97  E-value=15  Score=27.19  Aligned_cols=52  Identities=19%  Similarity=0.062  Sum_probs=33.6

Q ss_pred             CCCcEEEEeeCCCCCCcccccHHHHHHHHH-HhC-CcEEEeecCC--CCChhHHhhhh
Q psy785           56 DDVPMVLVGNKCDLEEERVVGKEQGASLAR-AFA-CTFLETSAKA--KVNSWLCVECT  109 (112)
Q Consensus        56 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~-~~~~~~Sa~~--~~~v~~~~~~l  109 (112)
                      .++|++|..|+.....+.  ..+.++++|. +.| .+...+..-.  |.|-.++-+.+
T Consensus       436 fgvpvVVAIN~F~tDT~~--Ei~~i~~~~~~~~ga~~~~~s~~~a~GG~Ga~eLA~~V  491 (625)
T PTZ00386        436 FGVPVVVALNKFSTDTDA--ELELVKELALQEGGAADVVVTDHWAKGGAGAVDLAQAL  491 (625)
T ss_pred             cCCCeEEEecCCCCCCHH--HHHHHHHHHHHhcCCccEEEechhhccchhHHHHHHHH
Confidence            689999999999754333  2456777888 778 4766655433  44555554443

>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=81.88  E-value=6.4  Score=21.38  Aligned_cols=23  Identities=9%  Similarity=0.085  Sum_probs=12.6

Q ss_pred             HHhhcccCCEEEEEEeCCChhhH
Q psy785           17 RDLYMKNGQGFILVYSITAQSTF   39 (112)
Q Consensus        17 ~~~~~~~~d~~i~v~d~~~~~s~   39 (112)
                      .+..+..+|.+|++.|..+....
T Consensus        42 l~~~i~~aD~VIv~t~~vsH~~~   64 (97)
T PF10087_consen   42 LPSKIKKADLVIVFTDYVSHNAM   64 (97)
T ss_pred             HHHhcCCCCEEEEEeCCcChHHH
Confidence            44455556666666665554433

>KOG0780|consensus

Probab=81.51  E-value=13  Score=26.28  Aligned_cols=40  Identities=15%  Similarity=0.211  Sum_probs=25.6

Q ss_pred             ceEEeCCCcccc-hhhHHhh-----cccCCEEEEEEeCCChhhHHH
Q psy785            2 LEILDTAGTEQF-TAMRDLY-----MKNGQGFILVYSITAQSTFND   41 (112)
Q Consensus         2 ~~i~Dt~g~~~~-~~~~~~~-----~~~~d~~i~v~d~~~~~s~~~   41 (112)
                      +-|.||+|.... .++....     .-+.|-+++|.|.+-..+-+.
T Consensus       186 vIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~  231 (483)
T KOG0780|consen  186 VIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEA  231 (483)
T ss_pred             EEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHH
Confidence            468999996643 2222221     336899999999976654433

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=80.94  E-value=14  Score=24.85  Aligned_cols=81  Identities=10%  Similarity=0.086  Sum_probs=41.9

Q ss_pred             EEeCCCcccchhhHHhhcc--------cCCEEEEEEeCCChhhHH-HHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc
Q psy785            4 ILDTAGTEQFTAMRDLYMK--------NGQGFILVYSITAQSTFN-DLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV   74 (112)
Q Consensus         4 i~Dt~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~   74 (112)
                      ++.|.|.-.-..+...++.        ..++++.++|+.+..... .......++.       .-=+++.||+|+.+.. 
T Consensus        95 vIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~-------~AD~IvlnK~Dl~~~~-  166 (318)
T PRK11537         95 VIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG-------YADRILLTKTDVAGEA-  166 (318)
T ss_pred             EEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH-------hCCEEEEeccccCCHH-
Confidence            5667776554444433321        358899999986533211 1111112221       1336789999987522 


Q ss_pred             ccHHHHHHHHHHhC--CcEEEee
Q psy785           75 VGKEQGASLARAFA--CTFLETS   95 (112)
Q Consensus        75 ~~~~~~~~~~~~~~--~~~~~~S   95 (112)
                         +......+..+  .+++.++
T Consensus       167 ---~~~~~~l~~lnp~a~i~~~~  186 (318)
T PRK11537        167 ---EKLRERLARINARAPVYTVV  186 (318)
T ss_pred             ---HHHHHHHHHhCCCCEEEEec
Confidence               34444455443  3555543

>KOG1487|consensus

Probab=80.54  E-value=1.9  Score=28.50  Aligned_cols=46  Identities=22%  Similarity=0.068  Sum_probs=33.4

Q ss_pred             CcEEEEeeCCCCCCcccccHHHHHHHHHHhC-CcEEEeecCCCCChhHHhhhhcc
Q psy785           58 VPMVLVGNKCDLEEERVVGKEQGASLARAFA-CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        58 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +|++.+.||+|-..-.+.+.        .+. ...+++||-.+.|++++++.+.+
T Consensus       232 Vp~iyvLNkIdsISiEELdi--------i~~iphavpISA~~~wn~d~lL~~mwe  278 (358)
T KOG1487|consen  232 VPCIYVLNKIDSISIEELDI--------IYTIPHAVPISAHTGWNFDKLLEKMWE  278 (358)
T ss_pred             eeeeeeecccceeeeeccce--------eeeccceeecccccccchHHHHHHHhh
Confidence            79999999999643222211        123 35789999999999999988765

>KOG1534|consensus

Probab=80.40  E-value=2.9  Score=26.85  Aligned_cols=68  Identities=18%  Similarity=0.162  Sum_probs=35.7

Q ss_pred             eEEeCCCcccchh---hHHhhc---c--c-CCEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785            3 EILDTAGTEQFTA---MRDLYM---K--N-GQGFILVYSITA-QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE   71 (112)
Q Consensus         3 ~i~Dt~g~~~~~~---~~~~~~---~--~-~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~   71 (112)
                      -++|+|||-....   ..+..+   +  + --+++++.|..= -++...+...+..+.... .-.+|.|-|.+|+|+..
T Consensus       101 lifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi-~lE~P~INvlsKMDLlk  178 (273)
T KOG1534|consen  101 LIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMI-SLEVPHINVLSKMDLLK  178 (273)
T ss_pred             EEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHH-HhcCcchhhhhHHHHhh
Confidence            5899999876432   222221   1  1 234556666421 123333333333332221 14689999999999864

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=80.28  E-value=3  Score=27.01  Aligned_cols=22  Identities=14%  Similarity=0.040  Sum_probs=19.8

Q ss_pred             cEEEeecCCCCChhHHhhhhcc
Q psy785           90 TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        90 ~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      |++..||+++.|+..+++.+.+
T Consensus       242 pv~~gSa~~~~G~~~ll~~~~~  263 (268)
T cd04170         242 PVLCGSALTNIGVRELLDALVH  263 (268)
T ss_pred             EEEEeeCCCCcCHHHHHHHHHH
Confidence            8999999999999999988753

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>TIGR01287 nifH nitrogenase iron protein

Probab=80.27  E-value=13  Score=24.06  Aligned_cols=64  Identities=16%  Similarity=0.171  Sum_probs=33.3

Q ss_pred             ceEEeCCCcccchhh-HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEeeC
Q psy785            2 LEILDTAGTEQFTAM-RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV-LVGNK   66 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK   66 (112)
                      +-++||+|......+ .......+|.+++++.++ +.++..+...++.+.+.....+.++. ++.|+
T Consensus       118 ~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~  183 (275)
T TIGR01287       118 FVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGE-MMALYAANNICKGILKYAKSGGVRLGGLICNS  183 (275)
T ss_pred             EEEEeccCcceecceeeccccccccEEEEEecch-HHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcC
Confidence            457889774432221 111123679999988764 45666555554444333222344443 44454

This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.

>PRK13507 formate--tetrahydrofolate ligase; Provisional

Probab=80.23  E-value=14  Score=27.17  Aligned_cols=52  Identities=8%  Similarity=-0.075  Sum_probs=34.3

Q ss_pred             CCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCC--CCChhHHhhhh
Q psy785           56 DDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKA--KVNSWLCVECT  109 (112)
Q Consensus        56 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~v~~~~~~l  109 (112)
                      .++|+++..|+.....+.+  .+.+++++.+.+.+...+..-.  |.|-.++.+.+
T Consensus       400 fg~pvVVaiN~F~~Dt~~E--i~~l~~~~~~~g~~~~v~~~wa~GGeGa~eLA~~V  453 (587)
T PRK13507        400 SGINPVVCINAFYTDTHAE--IAIVRRLAEQAGARVAVSRHWEKGGEGALELADAV  453 (587)
T ss_pred             cCCCeEEEeCCCCCCCHHH--HHHHHHHHHHcCCCEEEechhhccchhHHHHHHHH
Confidence            6799999999997643332  4567788888888766544333  44555554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	112
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		7e-47
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		7e-47
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		4e-46
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		4e-46
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		1e-29
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		5e-28
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		8e-28
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		1e-27
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-27
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-27
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		1e-27
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		1e-27
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		1e-27
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		1e-27
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		1e-27
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		1e-27
1wq1_R	166	Ras-Rasgap Complex Length = 166		1e-27
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-27
6q21_A	171	Molecular Switch For Signal Transduction: Structura		1e-27
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		1e-27
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		1e-27
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		1e-27
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		1e-27
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		1e-27
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		1e-27
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		1e-27
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		1e-27
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		2e-27
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-27
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-27
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		2e-27
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		2e-27
4q21_A	189	Molecular Switch For Signal Transduction: Structura		2e-27
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-27
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		2e-27
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		2e-27
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		2e-27
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		2e-27
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		3e-27
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		3e-27
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		4e-27
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-27
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		7e-27
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		8e-27
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		8e-27
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-26
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-26
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-26
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		8e-26
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		9e-26
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		3e-25
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		1e-23
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		2e-23
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		2e-23
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		2e-23
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		2e-23
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		2e-23
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		2e-23
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		2e-23
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		2e-23
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		2e-23
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		3e-23
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		4e-21
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		3e-18
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		5e-18
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		8e-18
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-17
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		1e-16
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		2e-16
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		7e-16
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		1e-15
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		1e-15
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-15
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		2e-15
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		3e-15
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		4e-15
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		4e-15
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		4e-15
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		4e-15
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		4e-15
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		4e-15
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		5e-15
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		5e-15
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		7e-15
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		2e-14
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		2e-14
4fmc_B	171	Espg-Rab1 Complex Length = 171		2e-14
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		2e-14
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		2e-14
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		2e-14
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		2e-14
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		2e-14
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		3e-14
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		5e-14
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		9e-14
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		2e-13
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		2e-13
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		2e-13
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		3e-13
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		3e-13
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		7e-13
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		1e-12
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		2e-12
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		2e-12
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		3e-12
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		3e-12
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		3e-12
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		4e-12
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		4e-12
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		5e-12
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		5e-12
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		5e-12
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		5e-12
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		6e-12
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		6e-12
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		6e-12
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		7e-12
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		7e-12
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		7e-12
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		7e-12
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		9e-12
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		9e-12
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		1e-11
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		1e-11
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		1e-11
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		2e-11
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		2e-11
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		2e-11
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		3e-11
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		3e-11
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		3e-11
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		3e-11
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		4e-11
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		4e-11
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		5e-11
3icq_B	171	Karyopherin Nuclear State Length = 171		5e-11
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		5e-11
1vg1_A	185	Gdp-bound Rab7 Length = 185		5e-11
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		7e-11
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		7e-11
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		8e-11
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		8e-11
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		8e-11
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		8e-11
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		8e-11
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		8e-11
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		8e-11
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		9e-11
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		9e-11
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		1e-10
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		1e-10
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		1e-10
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		1e-10
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		1e-10
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		2e-10
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		3e-10
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		3e-10
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		4e-10
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		7e-10
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		7e-10
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		7e-10
2bku_A	177	Kap95p:rangtp Complex Length = 177		7e-10
2efc_B	181	Ara7-GdpATVPS9A Length = 181		8e-10
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		8e-10
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		8e-10
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		8e-10
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		9e-10
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		9e-10
1byu_A	216	Canine Gdp-Ran Length = 216		1e-09
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		1e-09
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		1e-09
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		1e-09
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		1e-09
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		1e-09
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		1e-09
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		1e-09
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		1e-09
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		1e-09
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		1e-09
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		1e-09
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		1e-09
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		2e-09
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		2e-09
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		2e-09
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		2e-09
4fmc_F	117	Espg-Rab1 Complex Length = 117		2e-09
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		3e-09
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		3e-09
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		3e-09
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		4e-09
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		4e-09
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		5e-09
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		6e-09
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		1e-08
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		1e-08
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		2e-08
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		3e-08
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		4e-08
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		5e-08
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		6e-07
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		1e-06
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		2e-06
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		3e-06
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		2e-05
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		2e-05
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		4e-05
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		9e-05
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		1e-04
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		1e-04
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		2e-04
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		2e-04
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		2e-04
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		2e-04
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		2e-04
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		2e-04
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		2e-04
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		2e-04
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		2e-04
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		2e-04
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		2e-04
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		2e-04
1s1c_A	183	Crystal Structure Of The Complex Between The Human		2e-04
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		2e-04
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		2e-04
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		4e-04
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		4e-04
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		4e-04
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		4e-04
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		5e-04
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		5e-04
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		5e-04
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		5e-04
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		5e-04
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		6e-04
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		6e-04
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		6e-04
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		6e-04
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		6e-04
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		6e-04
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		7e-04
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		8e-04
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		8e-04

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score =  181 bits (460), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 88/102 (86%), Positives = 95/102 (93%), Gaps = 1/102 (0%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           MLEILDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDTDDVPM
Sbjct: 54  MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPM 113
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
           +LVGNKCDLE+ERVVGKEQG +LAR +  C FLE+SAK+K+N
Sbjct: 114 ILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKIN 155

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score =  181 bits (460), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 88/102 (86%), Positives = 95/102 (93%), Gaps = 1/102 (0%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           MLEILDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDTDDVPM
Sbjct: 52  MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
           +LVGNKCDLE+ERVVGKEQG +LAR +  C FLE+SAK+K+N
Sbjct: 112 ILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKIN 153

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score =  179 bits (454), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 87/102 (85%), Positives = 95/102 (93%), Gaps = 1/102 (0%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           MLEILDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDT+DVPM
Sbjct: 52  MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFA-CTFLETSAKAKVN 101
           +LVGNKCDLE+ERVVGKEQG +LAR +  C FLE+SAK+K+N
Sbjct: 112 ILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKIN 153

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score =  179 bits (453), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 87/102 (85%), Positives = 95/102 (93%), Gaps = 1/102 (0%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           MLEILDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDT+DVPM
Sbjct: 52  MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFA-CTFLETSAKAKVN 101
           +LVGNKCDLE+ERVVGKEQG +LAR +  C FLE+SAK+K+N
Sbjct: 112 ILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKIN 153

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score =  124 bits (312), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 61/99 (61%), Positives = 78/99 (78%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +LEILDTAGTEQF +MRDLY+KNGQGFILVYS+  Q +F D+  +R+QI+RVK  + VP+
Sbjct: 52  VLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPV 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           +LVGNK DLE ER V   +G +LA  + C F+ETSAK+K
Sbjct: 112 ILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSK 150

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score =  119 bits (298), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 51/100 (51%), Positives = 75/100 (75%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+ILDTAG E+F AMR+ YM+ G+GF+LV+S+T + +F ++   + QILRVKD D+ PM+
Sbjct: 55  LDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMI 114
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L+GNK DL+ +R V +E+G  LAR    T++E SAK ++N
Sbjct: 115 LIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMN 154

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score =  118 bits (296), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 73/99 (73%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD++DVPM
Sbjct: 70  LLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM 129
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V  +Q   LAR++   F+ETSAK +
Sbjct: 130 VLVGNKCDL-PSRTVDTKQAQDLARSYGIPFIETSAKTR 167

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 73/99 (73%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD++DVPM
Sbjct: 53  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM 112
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V  +Q   LAR++   F+ETSAK +
Sbjct: 113 VLVGNKCDL-PSRTVDTKQAQDLARSYGIPFIETSAKTR 150

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score =  117 bits (293), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 58  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 117
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 118 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 155

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score =  117 bits (293), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score =  117 bits (293), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 57  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 116
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 117 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 154

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score =  117 bits (293), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 57  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 116
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 117 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 154

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score =  117 bits (293), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score =  117 bits (293), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 59  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 118
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 119 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 156

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score =  117 bits (292), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score =  117 bits (292), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 57  LLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 116
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 117 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 154

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score =  117 bits (292), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKCDL-AGRTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score =  116 bits (291), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGN+CDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNRCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score =  116 bits (290), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 74/99 (74%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D++  REQI RVKD+DDVPM
Sbjct: 70  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPM 129
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V  +Q   LA+++   F+ETSAK +
Sbjct: 130 VLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTR 167

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score =  115 bits (289), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 71/99 (71%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDT G E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score =  115 bits (289), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 71/99 (71%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDT G E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score =  115 bits (288), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 71/99 (71%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+ +AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNKCDL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score =  115 bits (287), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD++DVPM
Sbjct: 53  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM 112
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNK DL   R V  +Q   LAR++   F+ETSAK +
Sbjct: 113 VLVGNKSDL-PSRTVDTKQAQDLARSYGIPFIETSAKTR 150

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score =  115 bits (287), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD++DVPM
Sbjct: 53  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM 112
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNK DL   R V  +Q   LAR++   F+ETSAK +
Sbjct: 113 VLVGNKSDL-PSRTVDTKQAQDLARSYGIPFIETSAKTR 150

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD++DVPM
Sbjct: 53  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM 112
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNK DL   R V  +Q   LAR++   F+ETSAK +
Sbjct: 113 VLVGNKSDL-PSRTVDTKQAQDLARSYGIPFIETSAKTR 150

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 71/99 (71%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNK DL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKSDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score =  111 bits (278), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 52/99 (52%), Positives = 70/99 (70%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTA  E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNK DL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKXDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score =  111 bits (278), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 52/99 (52%), Positives = 70/99 (70%), Gaps = 1/99 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTA  E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
           VLVGNK DL   R V   Q   LAR++   ++ETSAK +
Sbjct: 112 VLVGNKXDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score =  109 bits (273), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 70/100 (70%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+ILDTAG E+F AMR+ YM+ G GF+LV++I  + +FN++  L  QILRVKD DD P+V
Sbjct: 59  LDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVV 118
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK DLE +R V + + ++   +    + E SAK ++N
Sbjct: 119 LVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLN 158

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 71/101 (70%), Gaps = 1/101 (0%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK-DTDDVPM 60
           ++ILDTAG E + A+RD Y ++G+GF+LV+SIT   +F   ++ REQILRVK + D +P+
Sbjct: 57  IDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPL 116
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           ++VGNK DLEE R V  E+  S A  +   ++ETSAK + N
Sbjct: 117 LVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRAN 157

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score =  104 bits (259), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 71/101 (70%), Gaps = 1/101 (0%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK-DTDDVPM 60
           ++ILDTAG E + A+RD Y ++G+GF+LV+SIT   +F   ++ REQILRVK + D +P+
Sbjct: 53  IDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPL 112
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           ++VGNK DLEE R V  E+  S A  +   ++ETSAK + N
Sbjct: 113 LVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRAN 153

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 45/97 (46%), Positives = 68/97 (70%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L++LDTAG E+F+AMR+ YM+ G GF++VYS+T +++F  +    + ILRVKD +  PM
Sbjct: 62  ILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM 121
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
           +LV NK DL   R V ++QG  +A  +   ++ETSAK
Sbjct: 122 ILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 158

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/100 (48%), Positives = 71/100 (71%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           ++ILDTAG E + A+RD Y ++G+GF+ V+SIT   +F   +D REQILRVK+ ++VP +
Sbjct: 68  IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 127
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK DLE++R V  E+  + A  +   ++ETSAK + N
Sbjct: 128 LVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN 167

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/100 (48%), Positives = 71/100 (71%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           ++ILDTAG E + A+RD Y ++G+GF+ V+SIT   +F   +D REQILRVK+ ++VP +
Sbjct: 56  IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 115
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK DLE++R V  E+  + A  +   ++ETSAK + N
Sbjct: 116 LVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN 155

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 45/97 (46%), Positives = 68/97 (70%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L++LDTAG E+F+AMR+ YM+ G GF++VYS+T +++F  +    + ILRVKD +  PM
Sbjct: 67  ILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM 126
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
           +LV NK DL   R V ++QG  +A  +   ++ETSAK
Sbjct: 127 ILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 163

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 45/97 (46%), Positives = 68/97 (70%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L++LDTAG E+F+AMR+ YM+ G GF++VYS+T +++F  +    + ILRVKD +  PM
Sbjct: 67  ILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM 126
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
           +LV NK DL   R V ++QG  +A  +   ++ETSAK
Sbjct: 127 ILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 163

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/100 (48%), Positives = 71/100 (71%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           ++ILDTAG E + A+RD Y ++G+GF+ V+SIT   +F   +D REQILRVK+ ++VP +
Sbjct: 64  IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 123
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK DLE++R V  E+  + A  +   ++ETSAK + N
Sbjct: 124 LVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN 163

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score =  103 bits (257), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/100 (48%), Positives = 71/100 (71%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           ++ILDTAG E + A+RD Y ++G+GF+ V+SIT   +F   +D REQILRVK+ ++VP +
Sbjct: 56  IDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 115
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK DLE++R V  E+  + A  +   ++ETSAK + N
Sbjct: 116 LVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN 155

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score =  103 bits (257), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 45/97 (46%), Positives = 68/97 (70%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L++LDTAG E+F+AMR+ YM+ G GF++VYS+T +++F  +    + ILRVKD +  PM
Sbjct: 67  ILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM 126
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
           +LV NK DL   R V ++QG  +A  +   ++ETSAK
Sbjct: 127 ILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 163

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score =  103 bits (256), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 48/100 (48%), Positives = 71/100 (71%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           ++ILDTAG E + A+RD Y ++G+GF+ V+SIT   +F   +D REQILRVK+ ++VP +
Sbjct: 54  IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 113
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK DLE++R V  E+  + A  +   ++ETSAK + N
Sbjct: 114 LVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRAN 153

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK-DTDDVPM 60
           L+I DT G+ QF AM+ L +  G  FILVYSIT++ +  +L  + EQI  +K D + +P+
Sbjct: 53  LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPI 112
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNKCD    R V   +  +LAR + C F+ETSAK   N
Sbjct: 113 MLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHN 153

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 68/101 (67%), Gaps = 2/101 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVPM 60
           L+I DT G+ QF AM+ L +  G  FILV+S+T++ +  +L  + + I+++K + +D+P+
Sbjct: 58  LQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPV 117
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNKCD E +R V   +  ++A+ + C F+ETSAK   N
Sbjct: 118 MLVGNKCD-ETQREVDTREAQAVAQEWKCAFMETSAKMNYN 157

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E++  +   Y +   GFIL+Y IT + +FN + D   QI +    D+  ++
Sbjct: 56  LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI-KTYSWDNAQVL 114
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNKCD+E+ERVV  E+G  LA      F E SAK  +N
Sbjct: 115 LVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNIN 154

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E++  +   Y +   GFIL+Y IT + +FN + D   QI +    D+  ++
Sbjct: 74  LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQI-KTYSWDNAQVI 132
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNKCD+EEERVV  E+G  LA      F E SAK  ++
Sbjct: 133 LVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENIS 172

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E++  +   Y +   GFIL Y IT + +FN + D   QI +    D+  ++
Sbjct: 59  LQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQI-KTYSWDNAQVL 117
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNKCD E+ERVV  E+G  LA      F E SAK  +N
Sbjct: 118 LVGNKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNIN 157

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/95 (44%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           +EILDTAG E  T  R+ +M+ G+GF+LVY IT + +F ++  L+  +  +K   +V ++
Sbjct: 78  MEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLI 136
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
           LVGNK DL+  R V  E+G  LA   AC F E SA
Sbjct: 137 LVGNKADLDHSRQVSTEEGEKLATELACAFYECSA 171

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E++  +   Y +   GF+L+Y I  Q +F  + D   QI +    D+  ++
Sbjct: 73  LQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI-KTYSWDNAQVI 131
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNKCDLE+ERVV  E G  LA      F E SAK  +N
Sbjct: 132 LVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENIN 171

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 63/101 (62%), Gaps = 2/101 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L++ +  G  ++  + D  M+ G  +++VYSIT +++F   S+LR Q+ R + T+D+P+
Sbjct: 60  LLDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI 117
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNK DL   R V   +G + A  F C F+ETSA  + N
Sbjct: 118 ILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHN 158

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 64/102 (62%), Gaps = 5/102 (4%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD--TDDVP 59
           L+I DTAG E+F  +   Y +   G +LVY IT + +F+++   R  I  +++  + DV 
Sbjct: 59  LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI---RNWIRNIEEHASADVE 115
Query: 60  MVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
            +++GNKCD+ ++R V KE+G  LA  +   F+ETSAKA +N
Sbjct: 116 KMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 64/102 (62%), Gaps = 5/102 (4%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD--TDDVP 59
           L+I DTAG E+F  +   Y +   G +LVY IT + +F+++   R  I  +++  + DV 
Sbjct: 57  LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI---RNWIRNIEEHASADVE 113
Query: 60  MVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
            +++GNKCD+ ++R V KE+G  LA  +   F+ETSAKA +N
Sbjct: 114 KMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 155

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E F ++   Y +   G +LVY IT + TFN L+   E   R     ++ ++
Sbjct: 61  LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDA-RQHSNSNMVIM 119
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L+GNK DLE  R V KE+G + AR     F+ETSAK   N
Sbjct: 120 LIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASN 159

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E F ++   Y +   G +LVY IT + TFN L+   E   R   + ++ ++
Sbjct: 72  LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDA-RQHSSSNMVIM 130
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L+GNK DLE  R V +E+G + AR     F+ETSAK   N
Sbjct: 131 LIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACN 170

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 62/96 (64%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+++DTAG ++++     Y  +  G+ILVYS+T+  +F  +  +  ++L +     +P++
Sbjct: 51  LQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIM 110
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
           LVGNK DL  ERV+  E+G +LA ++   FLE+SAK
Sbjct: 111 LVGNKKDLHMERVISYEEGKALAESWNAAFLESSAK 146

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 62/96 (64%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+++DTAG ++++     Y  +  G+ILVYS+T+  +F  +  +  ++L +     +P++
Sbjct: 54  LQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIM 113
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
           LVGNK DL  ERV+  E+G +LA ++   FLE+SAK
Sbjct: 114 LVGNKKDLHMERVISYEEGKALAESWNAAFLESSAK 149

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 62/96 (64%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+++DTAG ++++     Y  +  G+ILVYS+T+  +F  +  +  ++L +     +P++
Sbjct: 56  LQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIM 115
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
           LVGNK DL  ERV+  E+G +LA ++   FLE+SAK
Sbjct: 116 LVGNKKDLHMERVISYEEGKALAESWNAAFLESSAK 151

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 62/96 (64%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+++DTAG ++++     Y  +  G+ILVYS+T+  +F  +  +  ++L +     +P++
Sbjct: 56  LQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIM 115
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
           LVGNK DL  ERV+  E+G +LA ++   FLE+SAK
Sbjct: 116 LVGNKKDLHMERVISYEEGKALAESWNAAFLESSAK 151

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 51/81 (62%)
Query: 21  MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80
           M  G  +++VYS+T + +F   S+LR Q+ R + TDDVP++LVGNK DL   R V  ++G
Sbjct: 75  MAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEG 134
Query: 81  ASLARAFACTFLETSAKAKVN 101
            + A  F C F+ETSA    N
Sbjct: 135 RACAVVFDCKFIETSAALHHN 155

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 51/81 (62%)
Query: 21  MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80
           M  G  +++VYS+T + +F   S+LR Q+ R + TDDVP++LVGNK DL   R V  ++G
Sbjct: 70  MAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEG 129
Query: 81  ASLARAFACTFLETSAKAKVN 101
            + A  F C F+ETSA    N
Sbjct: 130 RACAVVFDCKFIETSAALHHN 150

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 51/81 (62%)
Query: 21  MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80
           M  G  +++VYS+T + +F   S+LR Q+ R + TDDVP++LVGNK DL   R V  ++G
Sbjct: 75  MAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEG 134
Query: 81  ASLARAFACTFLETSAKAKVN 101
            + A  F C F+ETSA    N
Sbjct: 135 RACAVVFDCKFIETSAALHHN 155

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 63/101 (62%), Gaps = 2/101 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L++ +  G  ++  + D  M+ G  +++VYSIT +++F   S+LR Q+ R + T+D+P+
Sbjct: 60  LLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI 117
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNK DL   R V   +G + A  F C F+ETSA  + N
Sbjct: 118 ILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHN 158

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 63/101 (62%), Gaps = 2/101 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L++ +  G  ++  + D  M+ G  +++VYSIT +++F   S+LR Q+ R + T+D+P+
Sbjct: 91  LLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI 148
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNK DL   R V   +G + A  F C F+ETSA  + N
Sbjct: 149 ILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHN 189

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F  +   Y +   G I+VY +T + +F+++    ++I R    ++V  +
Sbjct: 60  LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYA-MENVNKL 118
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNKCDL  +RVV  ++G  LA +    F+ETSAK   N
Sbjct: 119 LVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYN 158

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F  +   Y +   G I+VY +T Q +FN++    ++I R   +++V  +
Sbjct: 50  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKL 108
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNKCDL  ++VV        A +    FLETSAK   N
Sbjct: 109 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 148

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F  +   Y +   G I+VY +T Q +FN++    ++I R   +++V  +
Sbjct: 57  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKL 115
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNKCDL  ++VV        A +    FLETSAK   N
Sbjct: 116 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 155

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F  +   Y +   G I+VY +T Q +FN++    ++I R   +++V  +
Sbjct: 57  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKL 115
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNKCDL  ++VV        A +    FLETSAK   N
Sbjct: 116 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 155

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F  +   Y +   G I+VY +T Q +FN++    ++I R   +++V  +
Sbjct: 67  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKL 125
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNKCDL  ++VV        A +    FLETSAK   N
Sbjct: 126 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 165

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 59/96 (61%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L ++DTAG ++++ +   ++    G++LVYS+T+  +F  +  L +++        VP+V
Sbjct: 74  LHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVV 133
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
           LVGNK DL  ER V   +G  LA ++  TF+E+SA+
Sbjct: 134 LVGNKADLSPEREVQAVEGKKLAESWGATFMESSAR 169

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F  +   Y +   G I+VY +T Q +FN++    ++I R   +++V  +
Sbjct: 84  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKL 142
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNKCDL  ++VV        A +    FLETSAK   N
Sbjct: 143 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 182

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F  +   Y +   G I+VY +T Q +FN++    ++I R   +++V  +
Sbjct: 76  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKL 134
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNKCDL  ++VV        A +    FLETSAK   N
Sbjct: 135 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 174

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F  +   Y +   G I+VY +T Q +FN++    ++I R   +++V  +
Sbjct: 67  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKL 125
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNKCDL  ++VV        A +    FLETSAK   N
Sbjct: 126 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 165

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 62/101 (61%), Gaps = 2/101 (1%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L++ +  G  ++  + D  M+ G  +++VYSIT +++F   S+LR Q+ R + T+D+P+
Sbjct: 60  LLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI 117
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNK DL   R V   +G + A  F   F+ETSA  + N
Sbjct: 118 ILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHN 158

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L++ DTAG E+F ++   Y ++    +L+Y +T +++F+++     +I       DV ++
Sbjct: 62  LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALM 120
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L+GNK D   ERVV +E G  LA+ +   F+ETSAK  +N
Sbjct: 121 LLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLN 160

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 49/81 (60%)
Query: 21  MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80
           ++ G  +++VYSI  + +F   S+LR Q+ R    D VP++LVGNK DL   R V  E+G
Sbjct: 75  LQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEG 134
Query: 81  ASLARAFACTFLETSAKAKVN 101
            + A  F C F+ETSA  + N
Sbjct: 135 RACAVVFDCKFIETSATLQHN 155

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F  +   Y +   G I+VY +T Q +FN +    ++I R   T  V  +
Sbjct: 72  LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKL 130
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNKCDL+++RVV  +     A A    FLETSA    N
Sbjct: 131 LVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTN 170

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F  +   Y +   G I+VY +T Q +FN +    ++I R   T  V  +
Sbjct: 59  LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKL 117
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNKCDL+++RVV  +     A A    FLETSA    N
Sbjct: 118 LVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTN 157

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F  +   Y +   G I+VY +T Q +FN +    ++I R   T  V  +
Sbjct: 59  LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKL 117
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNKCDL+++RVV  +     A A    FLETSA    N
Sbjct: 118 LVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTN 157

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F  +   Y +   G I+VY +T Q +FN++    ++I R   +++V  +
Sbjct: 59  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKL 117
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVG KCDL  ++VV        A +    FLETSAK   N
Sbjct: 118 LVGIKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 157

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F ++   Y ++ +G ILVY IT + TF+DL    + I +   ++D  ++
Sbjct: 77  LQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA-SEDAELL 135
Query: 62  LVGNKCDLEEERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
           LVGNK D E +R + ++QG   A+      F E SAK   N
Sbjct: 136 LVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFN 176

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F  +   Y +   G ILVY IT + TF ++    + +      D+  ++
Sbjct: 54  LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTV-NEHANDEAQLL 112
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
           LVGNK D+ E RVV  +QG +LA+     F+E+SAK
Sbjct: 113 LVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAK 147

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F A+   Y +   G ++VY IT +ST+N LS        + + + V ++
Sbjct: 66  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-II 124
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L+GNK DLE +R V  E+    A      FLE SAK   N
Sbjct: 125 LIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGEN 164

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F  +   Y +   G ILVY IT + TF ++    + +      D+  ++
Sbjct: 54  LQIWDTAGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTV-NEHANDEAQLL 112
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
           LVGNK D  E RVV  +QG +LA+     F+E+SAK
Sbjct: 113 LVGNKSD-XETRVVTADQGEALAKELGIPFIESSAK 147

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L++ DTAG E+F ++   Y+++    ++VY IT  ++F+  S   + + R +   DV ++
Sbjct: 65  LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDV-RTERGSDVIIM 123
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK DL ++R V  E+G   A+     F+ETSAKA  N
Sbjct: 124 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 163

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L++ DTAG E+F  +   Y +   G ILVY +T + TF ++    + +      D+  ++
Sbjct: 58  LQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTV-NEHANDEAQLL 116
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
           LVGNK D+ E RVV  +QG +LA+     F+E+SAK
Sbjct: 117 LVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAK 151

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L++ DTAG E+F  +   Y +   G ILVY +T + TF ++    + +      D+  ++
Sbjct: 71  LQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTV-NEHANDEAQLL 129
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
           LVGNK D+ E RVV  +QG +LA+     F+E+SAK
Sbjct: 130 LVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAK 164

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F  +   Y +   G I+VY +T Q ++ ++    ++I R   +++V  +
Sbjct: 60  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYA-SENVNKL 118
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK DL  ++VV        A +    FLETSAK   N
Sbjct: 119 LVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATN 158

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F  +   Y +   G I+VY +T Q ++ ++    ++I R   +++V  +
Sbjct: 60  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYA-SENVNKL 118
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK DL  ++VV        A +    FLETSAK   N
Sbjct: 119 LVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATN 158

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 61/110 (55%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L++ DTAG E+F ++   + ++  GF+L++ +T+Q +F ++ +   Q+      ++  +V
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111
           L+GNK DL ++R V + Q   LA  +   + ETSA    N    VE   D
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLD 181

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 60/106 (56%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L++ DTAG E+F ++   + ++  GF+L++ +T+Q +F ++ +   Q+      ++  +V
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVE 107
           L+GNK DL ++R V + Q   LA  +   + ETSA    N    VE
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVE 177

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 62/110 (56%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L++ DTAG E+F ++   + ++  GF+L++ +T + +F ++ +   Q+     +++  +V
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111
           L GNK DLE++R V +E+   LA  +   + ETSA    N    +E   D
Sbjct: 132 LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLD 181

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 60/107 (56%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L++ DTAG E+F ++   + ++  GF+L++ +T+Q +F ++ +   Q+      ++  +V
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVEC 108
           L+GNK DL ++R V + Q   LA  +   + ETSA    N    VE 
Sbjct: 146 LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVET 192

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 59/107 (55%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L++ DTAG E+F ++   + ++  GF+L + +T+Q +F ++ +   Q+      ++  +V
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVEC 108
           L+GNK DL ++R V + Q   LA  +   + ETSA    N    VE 
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 59/107 (55%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L++ DTAG E+F ++   + ++  GF+L + +T+Q +F ++ +   Q+      ++  +V
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVEC 108
           L+GNK DL ++R V + Q   LA  +   + ETSA    N    VE 
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L++ DTAG E+F  +   Y +   G ILVY +T + TF ++    + +      D+  ++
Sbjct: 54  LQLWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTV-NEHANDEAQLL 112
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
           LVGNK D  E RVV  +QG +LA+     F+E+SAK
Sbjct: 113 LVGNKSD-XETRVVTADQGEALAKELGIPFIESSAK 147

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L I DTAG E+F A+  +Y ++  G ILVY IT + +F  + +  ++ LR    +++ + 
Sbjct: 57  LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKE-LRKMLGNEICLC 115
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
           +VGNK DLE+ER V  ++  S A +       TSAK
Sbjct: 116 IVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAK 151

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L I DTAG E+F A+  +Y ++  G ILVY IT + +F  + +  ++ LR    +++ + 
Sbjct: 71  LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKE-LRKMLGNEICLC 129
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
           +VGNK DLE+ER V  ++  S A +       TSAK
Sbjct: 130 IVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAK 165

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L I DTAG E+F A+  +Y ++  G ILVY IT + +F  + +  ++ LR    +++ + 
Sbjct: 57  LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKE-LRKMLGNEICLC 115
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
           +VGNK DLE+ER V  ++  S A +       TSAK
Sbjct: 116 IVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAK 151

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 4   ILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVL 62
           I DTAG E+F A+  +Y +     I+VY IT + TF+ L + +RE  LR      + + +
Sbjct: 58  IWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRE--LRQHGPPSIVVAI 115
Query: 63  VGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
            GNKCDL + R V +      A +    F+ETSAK  +N
Sbjct: 116 AGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAIN 154

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG  +F A+   Y +   G ++VY IT +ST+N LS        + + + V ++
Sbjct: 81  LQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-II 139
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L+GNK DLE +R V  E+    A      FLE SAK   N
Sbjct: 140 LIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGEN 179

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 4   ILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVL 62
           I DTAG E+F A+  +Y +     I+VY IT + TF+ L + +RE  LR      + + +
Sbjct: 59  IWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRE--LRQHGPPSIVVAI 116
Query: 63  VGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
            GNKCDL + R V +      A +    F+ETSAK  +N
Sbjct: 117 AGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAIN 155

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L + DTAG E+F A+   Y +  Q  +LV+S T + +F  +S  RE++  V +  D+P  
Sbjct: 56  LMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKV--VAEVGDIPTA 113
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LV NK DL ++  +  E+   LA+     F  TS K  +N
Sbjct: 114 LVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLN 153

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L++ DTAG E+F ++   Y+++    ++VY IT  ++F   +   + + R +   DV ++
Sbjct: 57  LQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIM 115
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK DL ++R V  E+G   A+     F+ETSAKA  N
Sbjct: 116 LVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 155

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L++ DTAG E+F ++   Y+++    I+VY IT + +F + +   + IL  +   DV + 
Sbjct: 52  LQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-KDVIIA 110
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK DL + R V  E+G   A+ +   F ETSAKA  N
Sbjct: 111 LVGNKTDLGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHN 150

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L++ DTAG E+F ++   Y+++    ++VY IT  ++F   +   + + R +   DV ++
Sbjct: 64  LQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIM 122
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK DL ++R V  E+G   A+     F+ETSAKA  N
Sbjct: 123 LVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 162

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 58/107 (54%), Gaps = 12/107 (11%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTF----NDLSDLREQILRVKDTDD 57
            EI DTAG E+F ++   Y +N Q  ++VY +T   +F    + + +L EQ      + D
Sbjct: 54  FEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-----SKD 108
Query: 58  VPMVLVGNKCD-LEE--ERVVGKEQGASLARAFACTFLETSAKAKVN 101
           + + LVGNK D L+E  ER V +E+G  LA      F ETSAK   N
Sbjct: 109 IIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGEN 155

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L I DTAG E+F  +   Y +  QG ILVY +T + TF  L +   ++      +D+   
Sbjct: 66  LAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNX 125
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
           LVGNK D +E R V + +G   AR  +  F+E SAK
Sbjct: 126 LVGNKID-KENREVDRNEGLKFARKHSXLFIEASAK 160

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
            EI DTAG E++ ++  +Y +  Q  I+VY IT Q TF       +++ R + +  + + 
Sbjct: 59  FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQR-QASPSIVIA 117
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L GNK DL  +R+V  E+  + A   +  F+ETSAK  +N
Sbjct: 118 LAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMN 157

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L++ DTAG E+F ++   Y+++    ++VY IT  ++F   +   + + R +   DV ++
Sbjct: 52  LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIM 110
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK DL ++R V  E+G   A+     F+ETSAKA  N
Sbjct: 111 LVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 150

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L++ DTAG E+F ++   Y+++    ++VY IT  ++F   S   + + R +   DV ++
Sbjct: 53  LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDV-RTERGSDVIIM 111
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK DL ++R +  E+G   A+  +  F+ETSAK   N
Sbjct: 112 LVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYN 151

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L++ DTAG E+F ++   Y+++    ++VY IT  ++F   +   + + R +   DV ++
Sbjct: 57  LQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIM 115
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK DL ++R V  E+G   A+     F+ETSAKA  N
Sbjct: 116 LVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 155

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F  +   Y +   G I+VY +T+  +F ++     +I   ++ DDV  +
Sbjct: 60  LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI--NQNCDDVCRI 117
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK D  E +VV  E     A        ETSAK  VN
Sbjct: 118 LVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVN 157

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L++ DTAG E+F ++   Y+++    ++VY IT  ++F   +   + + R +   DV ++
Sbjct: 67  LQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIM 125
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK DL ++R V  E+G   A+     F+ETSAKA  N
Sbjct: 126 LVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 165

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQIL---RVKDTDDV 58
           ++I DTAG E+F ++   + +     +LV+ +TA +TF  L   R++ L     +D ++ 
Sbjct: 59  MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118
Query: 59  PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           P V++GNK DLE  +V  K   A         + ETSAK  +N
Sbjct: 119 PFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAIN 161

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
            ++ DTAG E+F  +RD Y  N Q  I+++ +T++ T+ ++ +    ++RV   +++P+V
Sbjct: 56  FDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 113
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L GNK D++E +V  K +  +  R     + + SAK+  N
Sbjct: 114 LCGNKVDVKERKV--KAKTITFHRKKNLQYYDISAKSNYN 151

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
            ++ DTAG E+F  +RD Y  N Q  I+++ +T++ T+ ++ +    ++RV   +++P+V
Sbjct: 55  FDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 112
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L GNK D++E +V  K +  +  R     + + SAK+  N
Sbjct: 113 LCGNKVDVKERKV--KAKTITFHRKKNLQYYDISAKSNYN 150

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQIL---RVKDTDDV 58
           ++I DTAG E+F ++   + +     +LV+ +TA +TF  L   R++ L     +D ++ 
Sbjct: 59  MQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118
Query: 59  PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           P V++GNK DLE  +V  K   A         + ETSAK  +N
Sbjct: 119 PFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAIN 161

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQIL---RVKDTDDV 58
           ++I DTAG E+F ++   + +     +LV+ +TA +TF  L   R++ L     +D ++ 
Sbjct: 59  MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118
Query: 59  PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           P V++GNK DLE  +V  K   A         + ETSAK  +N
Sbjct: 119 PFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAIN 161

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
            ++ DTAG E+F  +RD Y  N Q  I+++ +T++ T+ ++ +    ++RV   +++P+V
Sbjct: 63  FDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 120
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L GNK D++E +V  K +  +  R     + + SAK+  N
Sbjct: 121 LCGNKVDVKERKV--KAKTITFHRKKNLQYYDISAKSNYN 158

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
            EI DTAG E++ ++  +Y +  Q  I+VY IT + +F    +  +++ R + + ++ + 
Sbjct: 57  FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIA 115
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L GNK DL  +R V  ++  S A   +  F+ETSAK  +N
Sbjct: 116 LSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 16  MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK---DTDDVPMVLVGNKCDLEEE 72
           +RD  ++ G  F++V+S+T + +F   S + E +LR++      D+P++LVGNK DL   
Sbjct: 89  LRDHCLQTGDAFLIVFSVTDRRSF---SKVPETLLRLRAGRPHHDLPVILVGNKSDLARS 145
Query: 73  RVVGKEQGASLARAFACTFLETSAKAKVNS 102
           R V  E+G  LA   +C  +ETSA    N+
Sbjct: 146 REVSLEEGRHLAGTLSCKHIETSAALHHNT 175

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
            EI DTAG E++ ++  +Y +  Q  I+VY IT + +F    +  +++ R + + ++ + 
Sbjct: 57  FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIA 115
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L GNK DL  +R V  ++  S A   +  F+ETSAK  +N
Sbjct: 116 LSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
            EI DTAG E++ ++  +Y +  Q  I+VY IT + +F    +  +++ R + + ++ + 
Sbjct: 57  FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIA 115
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L GNK DL  +R V  ++  S A   +  F+ETSAK  +N
Sbjct: 116 LSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
            EI DTAG E++ ++  +Y +  Q  I+VY IT + +F    +  +++ R + + ++ + 
Sbjct: 58  FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIA 116
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L GNK DL  +R V  ++  S A   +  F+ETSAK  +N
Sbjct: 117 LSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 156

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
            EI DTAG E++ ++  +Y +  Q  I+VY IT + +F    +  +++ R + + ++ + 
Sbjct: 57  FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIA 115
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L GNK DL  +R V  ++  S A   +  F+ETSAK  +N
Sbjct: 116 LSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
            EI DTAG E++ ++  +Y +  Q  I+VY IT + +F    +  +++ R + + ++ + 
Sbjct: 57  FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIA 115
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L GNK DL  +R V  ++  S A   +  F+ETSAK  +N
Sbjct: 116 LSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
            EI DTAG E++ ++  +Y +  Q  I+VY IT + +F    +  +++ R + + ++ + 
Sbjct: 57  FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIA 115
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L GNK DL  +R V  ++  S A   +  F+ETSAK  +N
Sbjct: 116 LSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F ++   Y ++    IL Y IT + +F  L +   +I +   ++ V  V
Sbjct: 77  LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-SNKVITV 135
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK DL E R V +++    + A    +LETSAK   N
Sbjct: 136 LVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDN 175

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
            EI DTAG E++ ++  +Y +  Q  I+VY IT + +F    +  +++ R + + ++ + 
Sbjct: 56  FEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIA 114
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L GNK DL  +R V  ++  S A   +  F+ETSAK  +N
Sbjct: 115 LSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 154

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 4   ILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLV 63
           I DTAG E+F ++  +Y +     ++VY IT Q +F  L    ++ L+    +++ M + 
Sbjct: 76  IWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKE-LKEHGPENIVMAIA 134
Query: 64  GNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           GNKCDL + R V  +     A +     +ETSAK  +N
Sbjct: 135 GNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAIN 172

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQIL---RVKDTDDV 58
           ++I DTAG E+F ++   + +     +LV+ +TA +TF  L   R++ L     +D ++ 
Sbjct: 59  MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118
Query: 59  PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           P V++GNK D E  +V  K   A         + ETSAK  +N
Sbjct: 119 PFVVLGNKIDFENRQVATKRAQAWCYSKNNIPYFETSAKEAIN 161

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
            EI DTAG E++ ++  +Y +  Q  I+VY IT   TF    +  +++ R + + ++ + 
Sbjct: 56  FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR-QASPNIVIA 114
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L GNK DL  +R V  ++  + A   +  F+ETSAK  +N
Sbjct: 115 LAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMN 154

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 3   EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMV 61
           +I DTAG E++ A+   Y +   G +LVY IT +++F ++   L+E  LR     ++ ++
Sbjct: 60  QIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKE--LRDNADSNIVIL 117
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
           LVGNK DL+  RV+        A+     F+ETSA
Sbjct: 118 LVGNKSDLKHLRVINDNDATQYAKKEKLAFIETSA 152

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
            EI DTAG E++ ++  +Y +  Q  I+VY IT   TF    +  +++ R + + ++ + 
Sbjct: 54  FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR-QASPNIVIA 112
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L GNK DL  +R V  ++  + A   +  F+ETSAK  +N
Sbjct: 113 LAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMN 152

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
            EI DTAG E++ ++  +Y +  Q  I+VY IT   TF    +  +++ R + + ++ + 
Sbjct: 56  FEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR-QASPNIVIA 114
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L GNK DL  +R V  ++  + A   +  F+ETSAK  +N
Sbjct: 115 LAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMN 154

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 16  MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK---DTDDVPMVLVGNKCDLEEE 72
           ++D  ++ G  F++V+S+T + +F   S + E +LR++      D+P++LVGNK DL   
Sbjct: 68  LQDHCLQTGDAFLIVFSVTDRRSF---SKVPETLLRLRAGRPHHDLPVILVGNKSDLARS 124
Query: 73  RVVGKEQGASLARAFACTFLETSAKAKVNS 102
           R V  E+G  LA   +C  +ETSA    N+
Sbjct: 125 REVSLEEGRHLAGTLSCKHIETSAALHHNT 154

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 16  MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK---DTDDVPMVLVGNKCDLEEE 72
           ++D  ++ G  F++V+S+T + +F   S + E +LR++      D+P++LVGNK DL   
Sbjct: 78  LQDHCLQTGDAFLIVFSVTDRRSF---SKVPETLLRLRAGRPHHDLPVILVGNKSDLARS 134
Query: 73  RVVGKEQGASLARAFACTFLETSAKAKVNS 102
           R V  E+G  LA   +C  +ETSA    N+
Sbjct: 135 REVSLEEGRHLAGTLSCKHIETSAALHHNT 164

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT--DDV 58
           +L++ DTAG E+F ++   Y +   G +L+Y +T + +F    ++RE +  ++D   + V
Sbjct: 78  VLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSF---LNIREWVDMIEDAAHETV 134
Query: 59  PMVLVGNKCDL------EEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           P++LVGNK D+      E ++ V    G  LA  +   F ETSAK   N
Sbjct: 135 PIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN 183

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
            EI DTAG E++ ++   Y +  Q  I+VY IT + +F    +  +++ R + + ++ + 
Sbjct: 58  FEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIA 116
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L GNK DL  +R V  ++  S A   +  F ETSAK   N
Sbjct: 117 LSGNKADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXN 156

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 2   LEILDTAGTEQF-TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +++ DTAG E+F  +M   Y +N    + VY +T  ++F+ L    E+  +    +D+P 
Sbjct: 71  IQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPR 130
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
           +LVGNKCDL     V  +     A   +    ETSAK
Sbjct: 131 ILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAK 167

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
             + DTAG E+F  +RD Y    Q  I+++ +T++ T+ ++ +    ++RV   +++P+V
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-----WLCVECTND 111
           L GNK D+++ +V  K +     R     + + SAK+  N      WL  +   D
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 171

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
             + DTAG E+F  +RD Y    Q  I+++ +T++ T+ ++ +    ++RV   +++P+V
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-----WLCVECTND 111
           L GNK D+++ +V  K +     R     + + SAK+  N      WL  +   D
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 171

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
            EI DTAG E++ ++  +Y +     I+V+ +T Q++F       ++ L+ +   ++ M 
Sbjct: 63  FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQE-LQAQGNPNMVMA 121
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L GNK DL + R V  E   + A+     F+ETSAK   N
Sbjct: 122 LAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATN 161

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
             + DTAG E+F  +RD Y    Q  I+++ +T++ T+ ++ +    ++RV   +++P+V
Sbjct: 57  FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 114
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-----WLCVECTND 111
           L GNK D+++ +V  K +     R     + + SAK+  N      WL  +   D
Sbjct: 115 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 167

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F ++   Y +   G +LVY IT++ T+N L+       R   + ++ ++
Sbjct: 76  LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDA-RTLASPNIVVI 134
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
           L GNK DL+ ER V   + +  A+     FLETSA
Sbjct: 135 LCGNKKDLDPEREVTFLEASRFAQENELMFLETSA 169

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
             + DTAG E+F  +RD Y    Q  I+++ +T++ T+ ++ +    ++RV   +++P+V
Sbjct: 63  FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 120
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-----WLCVECTND 111
           L GNK D+++ +V  K +     R     + + SAK+  N      WL  +   D
Sbjct: 121 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 173

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
             + DTAG E+F  +RD Y    Q  I+++ +T++ T+ ++ +    ++RV   +++P+V
Sbjct: 54  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 111
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-----WLCVECTND 111
           L GNK D+++ +V  K +     R     + + SAK+  N      WL  +   D
Sbjct: 112 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 164

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 9/98 (9%)
Query: 3   EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFND----LSDLREQILRVKDTDDV 58
           +I DTAG E++ A+   Y +   G ++VY I+  S++ +    LS+LRE        D+V
Sbjct: 65  QIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENA-----DDNV 119
Query: 59  PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
            + L+GNK DL   R V  E+  + A+     F ETSA
Sbjct: 120 AVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSA 157

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
             + DTAG E+F  +RD Y    Q  I+++ +T++ T+ ++ +    ++RV   +++P+V
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-----WLCVECTND 111
           L GNK D+++ +V  K +     R     + + SAK+  N      WL  +   D
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 171

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
             + DTAG E+F  +RD Y    Q  I+++ +T++ T+ ++ +    ++RV   +++P+V
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-----WLCVECTND 111
           L GNK D+++ +V  K +     R     + + SAK+  N      WL  +   D
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 171

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR---VKDTDDV 58
           ++I DTAG E+F ++R  + +     +L +S+    +F +LS+ +++ +    VK+ +  
Sbjct: 62  MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 121
Query: 59  PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           P V++GNK D++E +V  +E  A         + ETSAK   N
Sbjct: 122 PFVILGNKTDIKERQVSTEEAQAWCKDNGDYPYFETSAKDSTN 164

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
             + DTAG E+F  +RD Y    Q  I+++ +T++ T+ ++ +    ++RV   +++P+V
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-----WLCVECTND 111
           L GNK D+++ +V  K +     R     + + SAK+  N      WL  +   D
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 171

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
             + DTAG E+F  +RD Y    Q  I+++ +T++ T+ ++ +    ++RV   +++P+V
Sbjct: 66  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 123
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-----WLCVECTND 111
           L GNK D+++ +V  K +     R     + + SAK+  N      WL  +   D
Sbjct: 124 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 176

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
             + DTAG E+F  +RD Y    Q  I+++ +T++ T+ ++ +    ++RV   +++P+V
Sbjct: 66  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 123
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-----WLCVECTND 111
           L GNK D+++ +V  K +     R     + + SAK+  N      WL  +   D
Sbjct: 124 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 176

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 2   LEILDTAGTEQF-TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +++ DTAG E+F  +M   Y +N    + VY  T  ++F+ L    E+  +    +D+P 
Sbjct: 80  IQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPR 139
Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
           +LVGNKCDL     V  +     A   +    ETSAK
Sbjct: 140 ILVGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAK 176

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
             + DTAG E+F  +RD Y    Q  I+++ +T++ T+ ++ +    ++RV   +++P+V
Sbjct: 61  FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-----WLCVECTND 111
           L GNK D+++ +V  K +     R     + + SAK+  N      WL  +   D
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 171

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F ++   Y +   G +LVY IT++ T+N L++      R+  + ++ ++
Sbjct: 59  LQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDA-RMLASQNIVII 117
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
           L GNK DL+ +R V   + +  A+     FLETSA
Sbjct: 118 LCGNKKDLDADREVTFLEASRFAQENELMFLETSA 152

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F ++   Y +   G +LVY IT++ T+N L++      R+  + ++ ++
Sbjct: 62  LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDA-RMLASQNIVII 120
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
           L GNK DL+ +R V   + +  A+     FLETSA
Sbjct: 121 LCGNKKDLDADREVTFLEASRFAQENELMFLETSA 155

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F ++   Y +   G +LVY IT++ T+N L++      R+  + ++ ++
Sbjct: 61  LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDA-RMLASQNIVII 119
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
           L GNK DL+ +R V   + +  A+     FLETSA
Sbjct: 120 LCGNKKDLDADREVTFLEASRFAQENELMFLETSA 154

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR---VKDTDDV 58
           L+I DTAG E+F ++R  + +     +L +S+  + +F +L + +++ +    VKD +  
Sbjct: 58  LQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHF 117
Query: 59  PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           P V++GNK D E+ +V  +E            +LETSAK   N
Sbjct: 118 PFVVLGNKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTN 160

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
             + DTAG E+F  +RD Y    Q  I+ + +T++ T+ ++ +    ++RV   +++P+V
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-----WLCVECTND 111
           L GNK D+++ +V  K +     R     + + SAK+  N      WL  +   D
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 171

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR---VKDTDDV 58
           ++I DTAG E+F ++R  + +     +L +S+    +F +LS+ +++ +    VK+ +  
Sbjct: 58  MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 117
Query: 59  PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           P V++GNK D+ E +V  +E  A         + ETSAK   N
Sbjct: 118 PFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATN 160

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR---VKDTDDV 58
           ++I DTAG E+F ++R  + +     +L +S+    +F +LS+ +++ +    VK+ +  
Sbjct: 60  MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 119
Query: 59  PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           P V++GNK D+ E +V  +E  A         + ETSAK   N
Sbjct: 120 PFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATN 162

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
             + DTAG E++  +RD Y    Q  I+++ +T++ T+ ++ +    ++RV   +++P+V
Sbjct: 61  FNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-----WLCVECTND 111
           L GNK D+++ +V  K +     R     + + SAK+  N      WL  +   D
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 171

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F  +   Y ++  G IL Y IT +S+F  +    E + +   ++ V + 
Sbjct: 80  LQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQL- 138
Query: 62  LVGNKCDLEEERVVGKEQGASLARAF--ACTFLETSAKAKVN 101
           L+GNK DL E R V   +  SLA  +   C  +ETSAK   N
Sbjct: 139 LIGNKSDLSELREVSLAEAQSLAEHYDILCA-IETSAKDSSN 179

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F  +   Y +   G I+VY +T Q +FN++    ++I R   +++V  +
Sbjct: 49  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKL 107
Query: 62  LVGNKCDL 69
           LVGNKCDL
Sbjct: 108 LVGNKCDL 115

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 3   EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62
           +I DTAG E++ A+   Y +   G +LVY I    T+ ++    ++ LR     ++ ++L
Sbjct: 72  QIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIML 130
Query: 63  VGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
           VGNK DL   R V  ++  + A     +F+ETSA
Sbjct: 131 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSA 164

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 3   EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62
           +I DTAG E++ A+   Y +   G +LVY I    T+ ++    ++ LR     ++ ++L
Sbjct: 60  QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIML 118
Query: 63  VGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
           VGNK DL   R V  ++  + A     +F+ETSA
Sbjct: 119 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSA 152

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 3   EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62
           +I DTAG E++ A+   Y +   G +LVY I    T+ ++    +++    D++ V M L
Sbjct: 81  QIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM-L 139
Query: 63  VGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
           VGNK DL   R V  ++  + A     +F+ETSA
Sbjct: 140 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSA 173

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 3   EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62
           +I DTAG E++ A+   Y +   G +LVY I    T+ ++    ++ LR     ++ ++L
Sbjct: 81  QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIML 139
Query: 63  VGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
           VGNK DL   R V  ++  + A     +F+ETSA
Sbjct: 140 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSA 173

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 3   EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62
           +I DTAG E++ A+   Y +   G +LVY I    T+ ++    ++ LR     ++ + L
Sbjct: 57  QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIXL 115
Query: 63  VGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
           VGNK DL   R V  ++  + A     +F+ETSA
Sbjct: 116 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSA 149

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 3   EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62
           +I DTAG E++ A+   Y +   G +LVY I    T+ ++    ++ LR     ++ + L
Sbjct: 63  QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIXL 121
Query: 63  VGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
           VGNK DL   R V  ++  + A     +F+ETSA
Sbjct: 122 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSA 155

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
             + DTAG E+F  + D Y    Q  I+++ +T++ T+ ++ +    ++RV   +++P+V
Sbjct: 61  FNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-----WLCVECTND 111
           L GNK D+++ +V  K +     R     + + SAK+  N      WL  +   D
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 171

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 5/105 (4%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQIL---RVKDTDDV 58
           +++ DTAG E+F ++   + +     +LVY +T  S+F ++   R++ L    V   +  
Sbjct: 60  MQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETF 119
Query: 59  PMVLVGNKCDLEE-ERVVGKEQGASLARAFA-CTFLETSAKAKVN 101
           P V++GNK D EE +++V ++    LA++        TSAK  +N
Sbjct: 120 PFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 3   EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFND----LSDLREQILRVKDTDDV 58
           +I DTAG E++ A+   Y +   G ++VY I+  S++ +    L++LRE        D+V
Sbjct: 62  QIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENA-----DDNV 116
Query: 59  PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
            + L+GNK DL   R V  ++  + A      F ETSA
Sbjct: 117 AVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSA 154

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 3   EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMV 61
           +I DTAG E++  +   Y +   G +LVY I    T+ ++   L+E  LR     ++ ++
Sbjct: 57  QIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKE--LRDHADSNIVIM 114
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
           LVGNK DL   R V  ++  + A     +F+ETSA
Sbjct: 115 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSA 149

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRV-KDTDDVPM 60
           L+I D  G      M D Y+   QG +LVY IT   +F +L D    + +V ++++  P+
Sbjct: 58  LQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPL 117
Query: 61  V-LVGNKCDLEEERVVGKEQGASLAR--AFACTFLETSAKAKVNSWLCVE 107
           V LVGNK DLE  R +  E+     +   F+  F+  SAK   + +LC +
Sbjct: 118 VALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFV--SAKTGDSVFLCFQ 165

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 3   EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62
           +I DTAG E++ A+   Y +   G +LV+ +T   T+  +    +++    +   V M L
Sbjct: 77  QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVM-L 135
Query: 63  VGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVEC 108
           VGNK DL + R V  E+    A      FLETSA    N  L  E 
Sbjct: 136 VGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFET 181

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 3   EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62
           +I DTAG E++ A+   Y +   G +LV+ +T   T+  +    +++    +   V M L
Sbjct: 62  QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVM-L 120
Query: 63  VGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVEC 108
           VGNK DL + R V  E+    A      FLETSA    N  L  E 
Sbjct: 121 VGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFET 166

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 58/110 (52%), Gaps = 12/110 (10%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTF-NDLSDLREQILRVKDTDDVPM 60
           L + DTAG E ++ +R L  +    F+L +S+ +++++ N L     ++ R     +VP+
Sbjct: 59  LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRF--APNVPI 116
Query: 61  VLVGNKCDLEEER--------VVGKEQGASLARAF-ACTFLETSAKAKVN 101
           VLVG K DL +++        V+   QG  L +   A  ++E S+K + N
Sbjct: 117 VLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQN 166

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 20  YMKNGQGFILVYSITAQSTFNDLSDLREQI-LRVKDTD-DVPMVLVGNKCDLEEERVVGK 77
           Y+     F++VYS+ ++ +F+  S   E + L  K+T   +P +L+GNK D+ + R V K
Sbjct: 88  YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTK 147
Query: 78  EQGASLARAFACTFLETSA 96
            +G +LA  F C F E SA
Sbjct: 148 AEGVALAGRFGCLFFEVSA 166

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L++ DTAG ++F  +R L   N   F+L +S+ + S+F ++S+     +R       P++
Sbjct: 70  LQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH-CPKAPII 128
Query: 62  LVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
           LVG + DL E            E+ V +E    LA    A +++E SA  + N
Sbjct: 129 LVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKN 181

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
           L + DTAG E +  +R L  +    FIL +S+ +++++ ++S  ++ I  +K     VP+
Sbjct: 58  LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPI 115
Query: 61  VLVGNKCDLEEER----------VVGKEQGASLARAF-ACTFLETSAKAKVN 101
           VLVG K DL +++           +   QG  L +   A  ++E S+K++ N
Sbjct: 116 VLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQEN 167

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 14/112 (12%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
           L + DTAG E +  +R L  +    F+L +S+ +++++ ++   ++ +  +K     +P+
Sbjct: 56  LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIH--KKWLPELKHYAPGIPI 113
Query: 61  VLVGNKCDLEEERVVGKE----------QGASLARAF-ACTFLETSAKAKVN 101
           VLVG K DL +++   K+          QG  L +   A  +LE S+K + N
Sbjct: 114 VLVGTKLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQN 165

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 12/111 (10%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L + DTAG E +  +R L  +    FIL +S+ +++++ +++      LR      VP++
Sbjct: 56  LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPII 114
Query: 62  LVGNKCDLEEER----------VVGKEQGASLARAFACT-FLETSAKAKVN 101
           LVG K DL +++           +   QG  L +      ++E S+K + N
Sbjct: 115 LVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQN 165

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
             + DTAG E+   ++D+Y     G IL + +T++ T  +L+   ++   V   ++ P+V
Sbjct: 63  FNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG-NEAPIV 121
Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +  NK D++  + + K+    + +     + E SAK   N
Sbjct: 122 VCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHN 161

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
           L + DTAG E +  +R L   +    ++ +SI +  +  ++ +  +    VK    +VP+
Sbjct: 55  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 112
Query: 61  VLVGNKCDLEE------------ERVVGKEQGASLA-RAFACTFLETSAKAK 99
           +LVGNK DL +            +  V  E+G  +A R  A  +LE SAK K
Sbjct: 113 ILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTK 164

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
           L + DTAG E +  +R L   +    ++ +SI +  +  ++ +  +    VK    +VP+
Sbjct: 75  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFXPNVPI 132
Query: 61  VLVGNKCDLEE------------ERVVGKEQGASLA-RAFACTFLETSAKAK 99
           +LVGNK DL +            +  V  E+G  +A R  A  +LE SAK K
Sbjct: 133 ILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTK 184

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
           L + DTAG E +  +R L   +    ++ +SI +  +  ++ +  +    VK    +VP+
Sbjct: 75  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 132
Query: 61  VLVGNKCDLEE------------ERVVGKEQGASLA-RAFACTFLETSAKAK 99
           +LVGNK DL +            +  V  E+G  +A R  A  +LE SAK K
Sbjct: 133 ILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTK 184

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
           L + DTAG E +  +R L   +    ++ +SI +  +  ++ +  +    VK    +VP+
Sbjct: 55  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 112
Query: 61  VLVGNKCDLE------------EERVVGKEQGASLA-RAFACTFLETSAKAK 99
           +LVGNK DL             ++  V  E+G  +A R  A  ++E SAK K
Sbjct: 113 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 164

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
           L + DTAG E +  +R L   +    ++ +SI +  +  ++ +  +    VK    +VP+
Sbjct: 53  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 110
Query: 61  VLVGNKCDLE------------EERVVGKEQGASLA-RAFACTFLETSAKAK 99
           +LVGNK DL             ++  V  E+G  +A R  A  ++E SAK K
Sbjct: 111 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 162

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
           L + DTAG E +  +R L   +    ++ +SI +  +  ++ +  +    VK    +VP+
Sbjct: 53  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 110
Query: 61  VLVGNKCDLE------------EERVVGKEQGASLA-RAFACTFLETSAKAK 99
           +LVGNK DL             ++  V  E+G  +A R  A  ++E SAK K
Sbjct: 111 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 162

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
           L + DTAG E +  +R L   +    ++ +SI +  +  ++ +  +    VK    +VP+
Sbjct: 55  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 112
Query: 61  VLVGNKCDLE------------EERVVGKEQGASLA-RAFACTFLETSAKAK 99
           +LVGNK DL             ++  V  E+G  +A R  A  ++E SAK K
Sbjct: 113 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 164

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
           L + DTAG E +  +R L   +    ++ +SI +  +  ++ +  +    VK    +VP+
Sbjct: 55  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 112
Query: 61  VLVGNKCDLE------------EERVVGKEQGASLA-RAFACTFLETSAKAK 99
           +LVGNK DL             ++  V  E+G  +A R  A  ++E SAK K
Sbjct: 113 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 164

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
           L + DTAG E +  +R L   +    ++ +SI +  +  ++ +  +    VK    +VP+
Sbjct: 59  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 116
Query: 61  VLVGNKCDLE------------EERVVGKEQGASLA-RAFACTFLETSAKAK 99
           +LVGNK DL             ++  V  E+G  +A R  A  ++E SAK K
Sbjct: 117 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 168

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
           L + DTAG E +  +R L   +    ++ +SI +  +  ++ +  +    VK    +VP+
Sbjct: 55  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 112
Query: 61  VLVGNKCDLE------------EERVVGKEQGASLA-RAFACTFLETSAKAK 99
           +LVGNK DL             ++  V  E+G  +A R  A  ++E SAK K
Sbjct: 113 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 164

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
           L + DTAG E +  +R L   +    ++ +SI +  +  ++ +  +    VK    +VP+
Sbjct: 57  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 114
Query: 61  VLVGNKCDLE------------EERVVGKEQGASLA-RAFACTFLETSAKAK 99
           +LVGNK DL             ++  V  E+G  +A R  A  ++E SAK K
Sbjct: 115 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 166

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
           L + DTAG E +  +R L   +    ++ +SI +  +  ++ +  +    VK    +VP+
Sbjct: 56  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 113
Query: 61  VLVGNKCDLE------------EERVVGKEQGASLA-RAFACTFLETSAKAK 99
           +LVGNK DL             ++  V  E+G  +A R  A  ++E SAK K
Sbjct: 114 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 165

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
           L + DTAG E +  +R L   +    ++ +SI +  +  ++ +  +    VK    +VP+
Sbjct: 56  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 113
Query: 61  VLVGNKCDLE------------EERVVGKEQGASLA-RAFACTFLETSAKAK 99
           +LVGNK DL             ++  V  E+G  +A R  A  ++E SAK K
Sbjct: 114 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 165

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
           L + DTAG E +  +R L   +    ++ +SI +  +  ++ +  +    VK    +VP+
Sbjct: 58  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 115
Query: 61  VLVGNKCDLE------------EERVVGKEQGASLA-RAFACTFLETSAKAK 99
           +LVGNK DL             ++  V  E+G  +A R  A  ++E SAK K
Sbjct: 116 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 167

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
           L + DTAG E +  +R L   +    ++ +SI +  +  ++ +  +    VK    +VP+
Sbjct: 58  LALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 115
Query: 61  VLVGNKCDLE------------EERVVGKEQGASLA-RAFACTFLETSAKAK 99
           +LVGNK DL             ++  V  E+G  +A R  A  ++E SAK K
Sbjct: 116 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 167

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
           L + DTAG E +  +R L   +    ++ +SI +  +  ++ +  +    VK    +VP+
Sbjct: 57  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 114
Query: 61  VLVGNKCDLE------------EERVVGKEQGASLA-RAFACTFLETSAKAK 99
           +LVGNK DL             ++  V  E+G  +A R  A  ++E SAK K
Sbjct: 115 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 166

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
           L + DTAG E +  +R L   +    ++ +SI +  +  ++ +  +    VK    +VP+
Sbjct: 57  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 114
Query: 61  VLVGNKCDLE------------EERVVGKEQGASLA-RAFACTFLETSAKAK 99
           +LVGNK DL             ++  V  E+G  +A R  A  ++E SAK K
Sbjct: 115 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 166

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 14/113 (12%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L I DTAG + +  +R L+  +    +L + +T+ ++F+++ + R           VP++
Sbjct: 84  LHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFN-RWYPEVNHFCKKVPII 142
Query: 62  LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSAKAKVN 101
           +VG K DL +++             V   +G  +AR+  A  +LE SA+   N
Sbjct: 143 VVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDN 195

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L + DTAG E +  +R L       F++ +S+ + ++F ++       +R     + P++
Sbjct: 53  LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 111
Query: 62  LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
           LVG K DL +++             +   QG ++A+   A  +LE SA
Sbjct: 112 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L + DTAG E +  +R L       F++ +S+ + ++F ++       +R     + P++
Sbjct: 53  LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 111
Query: 62  LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
           LVG K DL +++             +   QG ++A+   A  +LE SA
Sbjct: 112 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L + DTAG E +  +R L       F++ +S+ + ++F ++       +R     + P++
Sbjct: 53  LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 111
Query: 62  LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
           LVG K DL +++             +   QG ++A+   A  +LE SA
Sbjct: 112 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L + DTAG E +  +R L       F++ +S+ + ++F ++       +R     + P++
Sbjct: 53  LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 111
Query: 62  LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
           LVG K DL +++             +   QG ++A+   A  +LE SA
Sbjct: 112 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L + DTAG E +  +R L       F++ +S+ + ++F ++       +R     + P++
Sbjct: 53  LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 111
Query: 62  LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
           LVG K DL +++             +   QG ++A+   A  +LE SA
Sbjct: 112 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L + DTAG E +  +R L       F++ +S+ + ++F ++       +R     + P++
Sbjct: 53  LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 111
Query: 62  LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
           LVG K DL +++             +   QG ++A+   A  +LE SA
Sbjct: 112 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L + DTAG E +  +R L       F++ +S+ + ++F ++       +R     + P++
Sbjct: 56  LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 114
Query: 62  LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
           LVG K DL +++             +   QG ++A+   A  +LE SA
Sbjct: 115 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 162

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L + DTAG E +  +R L       F++ +S+ + ++F ++       +R     + P++
Sbjct: 53  LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 111
Query: 62  LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
           LVG K DL +++             +   QG ++A+   A  +LE SA
Sbjct: 112 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L + DTAG E +  +R L       F++ +S+ + ++F ++       +R     + P++
Sbjct: 53  LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 111
Query: 62  LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
           LVG K DL +++             +   QG ++A+   A  +LE SA
Sbjct: 112 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L + DTAG E +  +R L       F++ +S+ + ++F ++       +R     + P++
Sbjct: 80  LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 138
Query: 62  LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
           LVG K DL +++             +   QG ++A+   A  +LE SA
Sbjct: 139 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L + DTAG E +  +R L       F++ +S+ + ++F ++       +R     + P++
Sbjct: 60  LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 118
Query: 62  LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
           LVG K DL +++             +   QG ++A+   A  +LE SA
Sbjct: 119 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 166

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L + DTAG E +  +R L       F++ +S+ + ++F ++       +R     + P++
Sbjct: 80  LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 138
Query: 62  LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
           LVG K DL +++             +   QG ++A+   A  +LE SA
Sbjct: 139 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L + DTAG E +  +R L       F++ +S+ + ++F ++       +R     + P++
Sbjct: 63  LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 121
Query: 62  LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
           LVG K DL +++             +   QG ++A+   A  +LE SA
Sbjct: 122 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 169

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L + DTAG E +  +R L       F++ +S+ + ++F ++       +R     + P++
Sbjct: 72  LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 130
Query: 62  LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
           LVG K DL +++             +   QG ++A+   A  +LE SA
Sbjct: 131 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 178

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 38.9 bits (89), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L + DTAG E +  +R L       F++ +S+ + ++F ++       +R     + P++
Sbjct: 80  LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 138
Query: 62  LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
           LVG K DL +++             +   QG ++A+   A  +LE SA
Sbjct: 139 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L + DTAG E +  +R L       F++ +S+ + ++F+ +       +R     + P++
Sbjct: 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPII 263
Query: 62  LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
           LVG K DL +++             +   QG ++A+   A  +LE SA
Sbjct: 264 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L + DTAG E +  +R L       F++ +S+ + ++F+ +       +R     + P++
Sbjct: 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPII 263
Query: 62  LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
           LVG K DL +++             +   QG ++A+   A  +LE SA
Sbjct: 264 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L + DTAG E +  +R L       F++ +S+ + ++F+ +       +R     + P++
Sbjct: 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPII 263
Query: 62  LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
           LVG K DL +++             +   QG ++A+   A  +LE SA
Sbjct: 264 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	112
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	9e-64
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	1e-63
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	2e-63
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	2e-63
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	3e-63
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	1e-62
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	1e-62
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	2e-62
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	3e-62
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	3e-61
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	8e-61
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	9e-61
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	1e-60
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-60
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	3e-60
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	3e-60
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	1e-59
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	6e-59
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	1e-58
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	5e-57
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	6e-54
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	9e-53
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	2e-50
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	8e-41
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	4e-32
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	8e-31
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	2e-30
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	2e-30
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	2e-30
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	2e-30
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	3e-30
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	5e-30
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	5e-30
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	6e-30
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	9e-30
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-29
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-29
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	2e-29
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	2e-29
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	2e-29
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	3e-29
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	3e-29
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	3e-29
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	3e-29
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	5e-29
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	6e-29
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	8e-29
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	8e-29
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	8e-29
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	2e-28
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	2e-28
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	2e-28
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	2e-28
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	2e-28
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	3e-28
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	3e-28
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	4e-28
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	4e-28
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	6e-28
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	6e-28
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	8e-28
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-27
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-27
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	3e-27
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	4e-27
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	6e-27
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-26
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-26
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-24
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	2e-22
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	2e-19
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	3e-19
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	4e-19
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	7e-19
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	2e-18
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	5e-18
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	2e-17
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	6e-17
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	4e-15
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	2e-14
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	4e-14
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	1e-13
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	2e-13
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	4e-13
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	8e-11
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	2e-05

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  190 bits (484), Expect = 9e-64
 Identities = 38/101 (37%), Positives = 56/101 (55%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
            L + D    +    +    M  G  +++VYS+T + +F   S+LR Q+ R + TDDVP+
Sbjct: 50  SLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPI 109

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNK DL   R V  ++G + A  F C F+ETSA    N
Sbjct: 110 ILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHN 150

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  190 bits (484), Expect = 1e-63
 Identities = 49/101 (48%), Positives = 70/101 (69%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
            L+ILDTAG E+F AMR+ YM+ G GF+LV++I  + +FN++  L  QILRVKD DD P+
Sbjct: 58  RLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPV 117

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           VLVGNK DLE +R V + + ++   +    + E SAK ++N
Sbjct: 118 VLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLN 158

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  189 bits (483), Expect = 2e-63
 Identities = 36/101 (35%), Positives = 62/101 (61%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
            L+++DTAG ++++     Y  +  G+ILVYS+T+  +F  +  +  ++L +     +P+
Sbjct: 55  HLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI 114

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNK DL  ERV+  E+G +LA ++   FLE+SAK    
Sbjct: 115 MLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQT 155

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  189 bits (483), Expect = 2e-63
 Identities = 48/101 (47%), Positives = 71/101 (70%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
            ++ILDTAG E + A+RD Y ++G+GF+ V+SIT   +F   +D REQILRVK+ ++VP 
Sbjct: 67  QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF 126

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNK DLE++R V  E+  + A  +   ++ETSAK + N
Sbjct: 127 LLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN 167

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  188 bits (481), Expect = 3e-63
 Identities = 61/101 (60%), Positives = 78/101 (77%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +LEILDTAGTEQF +MRDLY+KNGQGFILVYS+  Q +F D+  +R+QI+RVK  + VP+
Sbjct: 52  VLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPV 111

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNK DLE ER V   +G +LA  + C F+ETSAK+K  
Sbjct: 112 ILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTM 152

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  188 bits (480), Expect = 1e-62
 Identities = 48/101 (47%), Positives = 71/101 (70%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
            ++ILDTAG E + A+RD Y ++G+GF+ V+SIT   +F   +D REQILRVK+ ++VP 
Sbjct: 63  QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF 122

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNK DLE++R V  E+  + A  +   ++ETSAK + N
Sbjct: 123 LLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN 163

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  188 bits (480), Expect = 1e-62
 Identities = 34/101 (33%), Positives = 59/101 (58%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
            L ++DTAG ++++ +   ++    G++LVYS+T+  +F  +  L +++        VP+
Sbjct: 73  HLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPV 132

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           VLVGNK DL  ER V   +G  LA ++  TF+E+SA+    
Sbjct: 133 VLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQL 173

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  186 bits (476), Expect = 2e-62
 Identities = 48/101 (47%), Positives = 71/101 (70%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
            ++ILDTAG E + A+RD Y ++G+GF+ V+SIT   +F   +D REQILRVK+ ++VP 
Sbjct: 53  QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF 112

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNK DLE++R V  E+  + A  +   ++ETSAK + N
Sbjct: 113 LLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRAN 153

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  186 bits (474), Expect = 3e-62
 Identities = 87/102 (85%), Positives = 95/102 (93%), Gaps = 1/102 (0%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           MLEILDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDT+DVPM
Sbjct: 52  MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPM 111

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFA-CTFLETSAKAKVN 101
           +LVGNKCDLE+ERVVGKEQG +LAR +  C FLE+SAK+K+N
Sbjct: 112 ILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKIN 153

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  183 bits (468), Expect = 3e-61
 Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 1/102 (0%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK-DTDDVP 59
            L+I DT G+ QF AM+ L +  G  FILVYSIT++ +  +L  + EQI  +K D + +P
Sbjct: 52  TLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP 111

Query: 60  MVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           ++LVGNKCD    R V   +  +LAR + C F+ETSAK   N
Sbjct: 112 IMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHN 153

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  183 bits (466), Expect = 8e-61
 Identities = 45/97 (46%), Positives = 68/97 (70%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L++LDTAG E+F+AMR+ YM+ G GF++VYS+T +++F  +    + ILRVKD +  PM
Sbjct: 67  ILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM 126

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
           +LV NK DL   R V ++QG  +A  +   ++ETSAK
Sbjct: 127 ILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 163

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  183 bits (466), Expect = 9e-61
 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 1/102 (0%)

Query: 1   MLEILDTAGTEQFTA-MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP 59
            L + D          +RD  ++ G  F++V+S+T + +F+ + +   ++   +   D+P
Sbjct: 73  TLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP 132

Query: 60  MVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           ++LVGNK DL   R V  E+G  LA   +C  +ETSA    N
Sbjct: 133 VILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHN 174

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  182 bits (465), Expect = 1e-60
 Identities = 54/101 (53%), Positives = 74/101 (73%), Gaps = 1/101 (0%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D++  REQI RVKD+DDVPM
Sbjct: 70  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPM 129

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           VLVGNKCDL   R V  +Q   LA+++   F+ETSAK +  
Sbjct: 130 VLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQG 169

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  181 bits (461), Expect = 2e-60
 Identities = 53/101 (52%), Positives = 71/101 (70%), Gaps = 1/101 (0%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           VLVGNK DL   R V   Q   LAR++   ++ETSAK +  
Sbjct: 112 VLVGNKSDL-AARTVESRQAQDLARSYGIPYIETSAKTRQG 151

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  181 bits (461), Expect = 3e-60
 Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 1/102 (0%)

Query: 1   MLEILDTAGTEQFTA-MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP 59
            L + D          ++D  ++ G  F++V+S+T + +F+ + +   ++   +   D+P
Sbjct: 52  TLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP 111

Query: 60  MVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           ++LVGNK DL   R V  E+G  LA   +C  +ETSA    N
Sbjct: 112 VILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHN 153

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  181 bits (461), Expect = 3e-60
 Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 2/103 (1%)

Query: 1   MLEILDTAGTEQF--TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDV 58
            L ++DT   E+   +  ++  ++ G  +++VYSI  + +F   S+LR Q+ R    D V
Sbjct: 53  TLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHV 112

Query: 59  PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           P++LVGNK DL   R V  E+G + A  F C F+ETSA  + N
Sbjct: 113 PIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHN 155

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  180 bits (459), Expect = 1e-59
 Identities = 54/101 (53%), Positives = 73/101 (72%), Gaps = 1/101 (0%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD++DVPM
Sbjct: 53  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM 112

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           VLVGNKCDL   R V  +Q   LAR++   F+ETSAK +  
Sbjct: 113 VLVGNKCDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQG 152

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  178 bits (455), Expect = 6e-59
 Identities = 41/97 (42%), Positives = 59/97 (60%), Gaps = 1/97 (1%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
            +EILDTAG E     R+ +M+ G+GF+LVY IT + +F ++  L+  +  +K   +V +
Sbjct: 77  SMEILDTAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTL 135

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
           +LVGNK DL+  R V  E+G  LA   AC F E SA 
Sbjct: 136 ILVGNKADLDHSRQVSTEEGEKLATELACAFYECSAC 172

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  178 bits (453), Expect = 1e-58
 Identities = 40/102 (39%), Positives = 67/102 (65%), Gaps = 2/102 (1%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVP 59
            L+I DT G+ QF AM+ L +  G  FILV+S+T++ +  +L  + + I+++K + +D+P
Sbjct: 57  TLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIP 116

Query: 60  MVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           ++LVGNKCD   +R V   +  ++A+ + C F+ETSAK   N
Sbjct: 117 VMLVGNKCDE-TQREVDTREAQAVAQEWKCAFMETSAKMNYN 157

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  174 bits (443), Expect = 5e-57
 Identities = 38/100 (38%), Positives = 62/100 (62%), Gaps = 2/100 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L++ +  G  ++  + D  M+ G  +++VYSIT +++F   S+LR Q+ R + T+D+P++
Sbjct: 92  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 149

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK DL   R V   +G + A  F C F+ETSA  + N
Sbjct: 150 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHN 189

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  165 bits (421), Expect = 6e-54
 Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 3/102 (2%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQI-LRVKDTD-DV 58
            L ++DTA  +      + Y+     F++VYS+ ++ +F+  S   E + L  K+T   +
Sbjct: 70  HLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSI 128

Query: 59  PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKV 100
           P +L+GNK D+ + R V K +G +LA  F C F E SA    
Sbjct: 129 PALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDF 170

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  162 bits (413), Expect = 9e-53
 Identities = 37/100 (37%), Positives = 61/100 (61%), Gaps = 2/100 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L++ +  G  ++  + D  M+ G  +++VYSIT +++F   S+LR Q+ R + T+D+P++
Sbjct: 61  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK DL   R V   +G + A  F   F+ETSA  + N
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHN 158

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  156 bits (397), Expect = 2e-50
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 8/104 (7%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L I D  G  +       +       + V+S+  + +F  + +   ++   ++  +VPM
Sbjct: 68  LLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPM 122

Query: 61  VLVGNKCDLEEE--RVVGKEQGASLARAF-ACTFLETSAKAKVN 101
           VLVG +  +     RV+   +   L+     CT+ ET A   +N
Sbjct: 123 VLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN 166

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  131 bits (333), Expect = 8e-41
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 10/106 (9%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQI--LRVKDTDDV 58
           ++ I + AG          +       I V+S+  +++F  +S L  Q+  LR +    +
Sbjct: 55  LVLIREEAGAP-----DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGL 109

Query: 59  PMVLVG--NKCDLEEERVVGKEQGASL-ARAFACTFLETSAKAKVN 101
            + LVG  ++      RVVG  +  +L A    C++ ET A   +N
Sbjct: 110 ALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLN 155

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  111 bits (279), Expect = 4e-32
 Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 1/100 (1%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
             + DTAG E+   ++D+Y     G IL + +T++ T  +L+   ++   V   ++ P+V
Sbjct: 63  FNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG-NEAPIV 121

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +  NK D++  + + K+    + +     + E SAK   N
Sbjct: 122 VCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHN 161

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  108 bits (272), Expect = 8e-31
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 7/106 (6%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQ----GFILVYSIT--AQSTFNDLSDLREQILRVKDT 55
           L    T             M +G+    GF+L   ++      F+D       +      
Sbjct: 137 LMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAK 196

Query: 56  DDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
              P+V+V  KCD   ER +      +L++      +ETSA++ VN
Sbjct: 197 TKKPIVVVLTKCDEGVERYIRDAHTFALSK-KNLQVVETSARSNVN 241

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  105 bits (265), Expect = 2e-30
 Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 2/100 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L + DTAG E+F A+   Y +  Q  +LV+S T + +F  +S  RE+++   +  D+P  
Sbjct: 56  LMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVA--EVGDIPTA 113

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LV NK DL ++  +  E+   LA+     F  TS K  +N
Sbjct: 114 LVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLN 153

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  106 bits (266), Expect = 2e-30
 Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 3/101 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
           L+I DTAG E+F  +   Y +   G I+VY +T Q +FN++   L+E  +    +++V  
Sbjct: 67  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE--IDRYASENVNK 124

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNKCDL  ++VV        A +    FLETSAK   N
Sbjct: 125 LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 165

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  106 bits (266), Expect = 2e-30
 Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 3/101 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
           L+I DTAG E+F  +   Y +   G I+VY +T Q +FN++   L+E  +    +++V  
Sbjct: 84  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE--IDRYASENVNK 141

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNKCDL  ++VV        A +    FLETSAK   N
Sbjct: 142 LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 182

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  106 bits (267), Expect = 2e-30
 Identities = 31/100 (31%), Positives = 58/100 (58%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L++ DTAG E+F ++   + ++  GF+L++ +T+Q +F ++ +   Q+      ++  +V
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L+GNK DL ++R V + Q   LA  +   + ETSA    N
Sbjct: 146 LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQN 185

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  105 bits (264), Expect = 3e-30
 Identities = 40/101 (39%), Positives = 57/101 (56%), Gaps = 3/101 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
           L+I DTAG E++  +   Y +   GF+L+Y I  Q +F  + D   +  ++    D+  +
Sbjct: 73  LQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQ--IKTYSWDNAQV 130

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNKCDLE+ERVV  E G  LA      F E SAK  +N
Sbjct: 131 ILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENIN 171

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  105 bits (263), Expect = 5e-30
 Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 3/101 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
           L+I DTAG E++  +   Y +   GFIL+Y IT + +FN + D   +  ++    D+  +
Sbjct: 74  LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQ--IKTYSWDNAQV 131

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNKCD+EEERVV  E+G  LA      F E SAK  ++
Sbjct: 132 ILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENIS 172

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  105 bits (264), Expect = 5e-30
 Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 3/101 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
           L+I DTAG E++  +   Y +   GFIL+Y IT + +FN + D   +  ++    D+  +
Sbjct: 59  LQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQ--IKTYSWDNAQV 116

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNKCD+E+ERVV  E+G  LA      F E SAK  +N
Sbjct: 117 LLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNIN 157

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  105 bits (263), Expect = 6e-30
 Identities = 31/100 (31%), Positives = 59/100 (59%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L++ DTAG E+F ++   + ++  GF+L++ +T + +F ++ +   Q+     +++  +V
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L GNK DLE++R V +E+   LA  +   + ETSA    N
Sbjct: 132 LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTN 171

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  103 bits (260), Expect = 9e-30
 Identities = 36/101 (35%), Positives = 61/101 (60%), Gaps = 3/101 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
           L++ DTAG E+F ++   Y ++    +L+Y +T +++F+++   L E  +      DV +
Sbjct: 62  LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTE--IHEYAQHDVAL 119

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +L+GNK D   ERVV +E G  LA+ +   F+ETSAK  +N
Sbjct: 120 MLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLN 160

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  104 bits (262), Expect = 1e-29
 Identities = 39/101 (38%), Positives = 56/101 (55%), Gaps = 3/101 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
           L+I DTAG E+F ++   Y ++    IL Y IT + +F  L + LRE  +    ++ V  
Sbjct: 77  LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLRE--IEQYASNKVIT 134

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           VLVGNK DL E R V +++    + A    +LETSAK   N
Sbjct: 135 VLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDN 175

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  103 bits (260), Expect = 1e-29
 Identities = 39/101 (38%), Positives = 63/101 (62%), Gaps = 3/101 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
           L+I DTAG E+F  +   Y +   G +LVY IT + +F+++ + +R   +    + DV  
Sbjct: 59  LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRN--IEEHASADVEK 116

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +++GNKCD+ ++R V KE+G  LA  +   F+ETSAKA +N
Sbjct: 117 MILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  104 bits (261), Expect = 2e-29
 Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 10/110 (9%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
            L + DTAG E ++ +R L  +    F+L +S+ +++++ ++       LR +   +VP+
Sbjct: 58  NLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELR-RFAPNVPI 116

Query: 61  VLVGNKCDLEEE--------RVVGKEQGASLARAF-ACTFLETSAKAKVN 101
           VLVG K DL ++         V+   QG  L +   A  ++E S+K + N
Sbjct: 117 VLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQN 166

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  103 bits (260), Expect = 2e-29
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 1/102 (0%)

Query: 2   LEILDTAGTEQF-TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +++ DTAG E+F  +M   Y +N    + VY +T  ++F+ L    E+  +    +D+P 
Sbjct: 71  IQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPR 130

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS 102
           +LVGNKCDL     V  +     A   +    ETSAK   ++
Sbjct: 131 ILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDN 172

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  103 bits (259), Expect = 2e-29
 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 2/102 (1%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD--TDDVP 59
           L+I D  G      M D Y+   QG +LVY IT   +F +L D    + +V +       
Sbjct: 58  LQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPL 117

Query: 60  MVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           + LVGNK DLE  R +  E+     +    +    SAK   +
Sbjct: 118 VALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDS 159

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  103 bits (258), Expect = 3e-29
 Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 3/101 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
            +I DTAG E++ A+   Y +   G +LV+ +T   T+  +   L+E  L       + +
Sbjct: 76  AQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKE--LYDHAEATIVV 133

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNK DL + R V  E+    A      FLETSA    N
Sbjct: 134 MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTN 174

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  103 bits (259), Expect = 3e-29
 Identities = 41/101 (40%), Positives = 56/101 (55%), Gaps = 3/101 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
           L+I DTAG E+F  +   Y +   G I+VY +T Q +FN +   L+E  +    T  V  
Sbjct: 59  LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQE--IDRYATSTVLK 116

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNKCDL+++RVV  +     A A    FLETSA    N
Sbjct: 117 LLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTN 157

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  102 bits (257), Expect = 3e-29
 Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 2/100 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F  +   Y +   G I+VY +T+  +F ++     +I +    DDV  +
Sbjct: 60  LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN--CDDVCRI 117

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK D  E +VV  E     A        ETSAK  VN
Sbjct: 118 LVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVN 157

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  103 bits (258), Expect = 3e-29
 Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 3/101 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
            +I DTAG E++ A+   Y +   G +LVY I    T+ ++   L+E  LR     ++ +
Sbjct: 80  AQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE--LRDHADSNIVI 137

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNK DL   R V  ++  + A     +F+ETSA    N
Sbjct: 138 MLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTN 178

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  101 bits (255), Expect = 5e-29
 Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 3/101 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
           L I DTAG E+F A+  +Y ++  G ILVY IT + +F  + + ++E  LR    +++ +
Sbjct: 57  LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKE--LRKMLGNEICL 114

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
            +VGNK DLE+ER V  ++  S A +       TSAK    
Sbjct: 115 CIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKG 155

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  102 bits (256), Expect = 6e-29
 Identities = 41/101 (40%), Positives = 59/101 (58%), Gaps = 3/101 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
           L+I DTAG E F ++   Y +   G +LVY IT + TFN L+  L +   R   + ++ +
Sbjct: 72  LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLED--ARQHSSSNMVI 129

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +L+GNK DLE  R V +E+G + AR     F+ETSAK   N
Sbjct: 130 MLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACN 170

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  101 bits (254), Expect = 8e-29
 Identities = 40/101 (39%), Positives = 55/101 (54%), Gaps = 3/101 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
           L+I DTAG E+F A+   Y +   G ++VY IT +ST+N LS  L +   R     +  +
Sbjct: 66  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD--ARNLTNPNTVI 123

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +L+GNK DLE +R V  E+    A      FLE SAK   N
Sbjct: 124 ILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGEN 164

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  102 bits (256), Expect = 8e-29
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 3/103 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR---VKDTDDV 58
           ++I DTAG E+F ++   + +     +LV+ +TA +TF  L   R++ L     +D ++ 
Sbjct: 59  MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118

Query: 59  PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           P V++GNK DLE  +V  K   A         + ETSAK  +N
Sbjct: 119 PFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAIN 161

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  101 bits (254), Expect = 8e-29
 Identities = 37/101 (36%), Positives = 61/101 (60%), Gaps = 3/101 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
           L++ DTAG E+F ++   Y+++    ++VY IT  ++F+  S  + +  +R +   DV +
Sbjct: 65  LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDD--VRTERGSDVII 122

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNK DL ++R V  E+G   A+     F+ETSAKA  N
Sbjct: 123 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 163

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  101 bits (253), Expect = 2e-28
 Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 3/101 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
           L+I DTAG E+F ++   Y +   G +LVY IT++ T+N L++ L +   R+  + ++ +
Sbjct: 61  LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTD--ARMLASQNIVI 118

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +L GNK DL+ +R V   + +  A+     FLETSA    N
Sbjct: 119 ILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEN 159

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  101 bits (254), Expect = 2e-28
 Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 3/101 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
           L+I DTAG E+F ++   Y +   G +LVY IT++ T+N L+  L +   R   + ++ +
Sbjct: 76  LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTD--ARTLASPNIVV 133

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +L GNK DL+ ER V   + +  A+     FLETSA    N
Sbjct: 134 ILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGEN 174

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  101 bits (253), Expect = 2e-28
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 3/101 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
            +I DTAG E++  +   Y +   G +LVY I    T+ ++   L+E  LR     ++ +
Sbjct: 56  AQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKE--LRDHADSNIVI 113

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNK DL   R V  ++  + A     +F+ETSA    N
Sbjct: 114 MLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTN 154

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  102 bits (255), Expect = 2e-28
 Identities = 28/100 (28%), Positives = 55/100 (55%), Gaps = 4/100 (4%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
             + DTAG E+F  +RD Y    Q  I+++ +T++ T+ ++ +    ++RV   +++P+V
Sbjct: 66  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 123

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L GNK D+++ +V    +     R     + + SAK+  N
Sbjct: 124 LCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYN 161

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  101 bits (254), Expect = 2e-28
 Identities = 36/101 (35%), Positives = 60/101 (59%), Gaps = 3/101 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
           L++ DTAG E+F ++   Y+++    ++VY IT  ++F   +  + +  +R +   DV +
Sbjct: 67  LQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDD--VRTERGSDVII 124

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNK DL ++R V  E+G   A+     F+ETSAKA  N
Sbjct: 125 MLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 165

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  100 bits (252), Expect = 3e-28
 Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 1/100 (1%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L I DTAG E+F  +   Y +  QG ILVY +T + TF  L +   ++      +D+  +
Sbjct: 66  LAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNM 125

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK D  E R V + +G   AR  +  F+E SAK    
Sbjct: 126 LVGNKIDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDG 164

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 99.9 bits (250), Expect = 3e-28
 Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
             I DTAG E+F A+  +Y +     I+VY IT + TF+ L + +RE  LR      + +
Sbjct: 57  FLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRE--LRQHGPPSIVV 114

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
            + GNKCDL + R V +      A +    F+ETSAK  +N
Sbjct: 115 AIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAIN 155

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =   99 bits (250), Expect = 4e-28
 Identities = 38/102 (37%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
           L+I DTAG E+F ++   Y ++ +G ILVY IT + TF+DL   ++   +    ++D  +
Sbjct: 77  LQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKM--IDKYASEDAEL 134

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
           +LVGNK D E +R + ++QG   A+      F E SAK   N
Sbjct: 135 LLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFN 176

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 99.5 bits (249), Expect = 4e-28
 Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 4/101 (3%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
           L+I DTAG E+F  +   Y +   G ILVY IT + TF ++    +   +     D+  +
Sbjct: 54  LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKT--VNEHANDEAQL 111

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNK D+ E RVV  +QG +LA+     F+E+SAK   N
Sbjct: 112 LLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDN 151

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  100 bits (250), Expect = 6e-28
 Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 4/101 (3%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
           L++ DTAG E+F  +   Y +   G ILVY +T + TF ++    +   +     D+  +
Sbjct: 71  LQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKT--VNEHANDEAQL 128

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNK D+ E RVV  +QG +LA+     F+E+SAK   N
Sbjct: 129 LLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDN 168

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 99.6 bits (249), Expect = 6e-28
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 3/101 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
             I DTAG E+F ++  +Y +     ++VY IT Q +F  L   ++E  L+    +++ M
Sbjct: 74  FLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKE--LKEHGPENIVM 131

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
            + GNKCDL + R V  +     A +     +ETSAK  +N
Sbjct: 132 AIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAIN 172

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 99.2 bits (248), Expect = 8e-28
 Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 5/105 (4%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR---VKDTDDV 58
           +++ DTAG E+F ++   + +     +LVY +T  S+F ++   R++ L    V   +  
Sbjct: 60  MQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETF 119

Query: 59  PMVLVGNKCDLEE-ERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
           P V++GNK D EE +++V ++    LA++        TSAK  +N
Sbjct: 120 PFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 99.3 bits (248), Expect = 1e-27
 Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 4/102 (3%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
           L+I DTAG E+F  +   Y ++  G IL Y IT +S+F  +   + +  +R     ++  
Sbjct: 80  LQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIED--VRKYAGSNIVQ 137

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFAC-TFLETSAKAKVN 101
           +L+GNK DL E R V   +  SLA  +     +ETSAK   N
Sbjct: 138 LLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSN 179

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 98.0 bits (245), Expect = 1e-27
 Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 3/101 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
            EI DTAG E++ ++  +Y +  Q  I+VY IT + +F    + ++E  L+ + + ++ +
Sbjct: 57  FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE--LQRQASPNIVI 114

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
            L GNK DL  +R V  ++  S A   +  F+ETSAK  +N
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 98.6 bits (246), Expect = 3e-27
 Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 3/101 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
            +I DTAG E++ A+   Y +   G ++VY I+  S++ + +  L E  LR    D+V +
Sbjct: 64  AQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSE--LRENADDNVAV 121

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
            L+GNK DL   R V  E+  + A+     F ETSA    N
Sbjct: 122 GLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSEN 162

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 97.2 bits (243), Expect = 4e-27
 Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
            EI DTAG E++ ++  +Y +     I+V+ +T Q++F      ++E  L+ +   ++ M
Sbjct: 63  FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQE--LQAQGNPNMVM 120

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
            L GNK DL + R V  E   + A+     F+ETSAK   N
Sbjct: 121 ALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATN 161

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 97.6 bits (243), Expect = 6e-27
 Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 6/101 (5%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
            +I DTAG E++ ++  LY +     I+V+ I+  +T +     + +    +K + +  +
Sbjct: 95  FDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQ----LKISSNYII 150

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LV NK D   +  V   +    A+     F++TSAK   N
Sbjct: 151 ILVANKIDK-NKFQVDILEVQKYAQDNNLLFIQTSAKTGTN 190

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 97.0 bits (242), Expect = 1e-26
 Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 9/107 (8%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
           L++ DTAG E+F ++   Y +   G +L+Y +T + +F ++ + +    +     + VP+
Sbjct: 79  LQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDM--IEDAAHETVPI 136

Query: 61  VLVGNKCDL------EEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNK D+      E ++ V    G  LA  +   F ETSAK   N
Sbjct: 137 MLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN 183

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 96.0 bits (240), Expect = 1e-26
 Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 5/104 (4%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR---VKDTDDV 58
           ++I DTAG E+F ++R  + +     +L +S+    +F +LS+ +++ +    VK+ +  
Sbjct: 58  MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 117

Query: 59  PMVLVGNKCDLEEERVVGKEQGASLARAFAC-TFLETSAKAKVN 101
           P V++GNK D+  ER V  E+  +  R      + ETSAK   N
Sbjct: 118 PFVILGNKIDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATN 160

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 91.6 bits (228), Expect = 1e-24
 Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 5/102 (4%)

Query: 2   LEI--LDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQI--LRVKDTDD 57
           +E+  LDTAG++ +      Y       ILV+ +++  +F       E +   R      
Sbjct: 73  VELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERP 132

Query: 58  VPMVLVGNKCDLEEER-VVGKEQGASLARAFACTFLETSAKA 98
           +  VLV NK DL  +R  V  +     A      F + SA  
Sbjct: 133 LRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANP 174

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 85.9 bits (213), Expect = 2e-22
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L++ DTAG ++F  +R L   N   F+L +S+ + S+F ++S+     +R       P++
Sbjct: 70  LQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH-CPKAPII 128

Query: 62  LVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
           LVG + DL E            E+ V +E    LA    A +++E SA  + N
Sbjct: 129 LVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKN 181

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 77.5 bits (191), Expect = 2e-19
 Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 16/115 (13%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVP 59
           +L + DTAG E +  +R L       F++ +S+   ++F   +   E +  +K+   +VP
Sbjct: 67  LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQ--NVKEEWVPELKEYAPNVP 124

Query: 60  MVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
            +L+G + DL +            E+ +  EQG  LA+   AC ++E SA  +  
Sbjct: 125 FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKG 179

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 77.4 bits (191), Expect = 3e-19
 Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 4/103 (3%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L + DTAG E++  +R L   +    +L +++  +++F+++S   E  ++    D    V
Sbjct: 73  LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIK-HYIDTAKTV 131

Query: 62  LVGNKCDLEE--ERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
           LVG K DL +     V K++G  L +      ++E S+ AK+ 
Sbjct: 132 LVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIG 174

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 77.0 bits (190), Expect = 4e-19
 Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 14/112 (12%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
           L + DTAG E +  +R L  +    FIL +S+ +++++ ++S   + I  +K     VP+
Sbjct: 58  LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSK--KWIPELKHYAPGVPI 115

Query: 61  VLVGNKCDLEE----------ERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
           VLVG K DL +             +   QG  L +   A  ++E S+K++ N
Sbjct: 116 VLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQEN 167

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 76.2 bits (188), Expect = 7e-19
 Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 11/110 (10%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSIT-AQSTFNDLSDLREQILRVKDTDDVP 59
           +L + D AG E+F +    +M     ++ VY ++  Q+  + +      I         P
Sbjct: 57  VLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKAR--ASSSP 114

Query: 60  MVLVGNKCDLEEER---VVGKEQGASLAR-----AFACTFLETSAKAKVN 101
           ++LVG   D+ +E+       +    L       A        + +    
Sbjct: 115 VILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDA 164

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 75.2 bits (185), Expect = 2e-18
 Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 14/113 (12%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L + DTAG E +  +R L       F++ +S+ + ++F ++       +R     + P++
Sbjct: 80  LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 138

Query: 62  LVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
           LVG K DL +               +   QG ++A+   A  +LE SA  +  
Sbjct: 139 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 191

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 76.9 bits (189), Expect = 5e-18
 Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 7/101 (6%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFND-LSDLREQILRVKDTDDVPM 60
               D  G E   A    +M     ++L+      S  +  L  + +           P+
Sbjct: 100 FHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKY------GGKSPV 153

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           ++V NK D      + +++      A    F   S K    
Sbjct: 154 IVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDG 194

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 72.1 bits (177), Expect = 2e-17
 Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 4/103 (3%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
            EI DTAG E+F ++   Y +N Q  ++VY +T   +F       ++ L  + + D+ + 
Sbjct: 54  FEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKE-LHEQASKDIIIA 112

Query: 62  LVGNKCD---LEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK D      ER V +E+G  LA      F ETSAK   N
Sbjct: 113 LVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGEN 155

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 71.7 bits (176), Expect = 6e-17
 Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 16/114 (14%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDL-REQILRVKDTDDVPM 60
           L + DTAG E +  +R L   +    ++ +S+ +  +  ++ +    ++       +VP+
Sbjct: 75  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK--HFCPNVPI 132

Query: 61  VLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
           +LV NK DL              +  V  + G ++A    A  +LE SAK K  
Sbjct: 133 ILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEG 186

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 67.1 bits (164), Expect = 4e-15
 Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 16/114 (14%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDL-REQILRVKDTDDVPM 60
           L I DTAG + +  +R L+  +    +L + +T+ ++F+++ +    ++        VP+
Sbjct: 84  LHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNH--FCKKVPI 141

Query: 61  VLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
           ++VG K DL +               V   +G  +AR+  A  +LE SA+   N
Sbjct: 142 IVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDN 195

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 65.2 bits (159), Expect = 2e-14
 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 20/116 (17%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKD-TDDV 58
           L + DTAG E +  +R L   +    ++ +SI +  +  ++ +    E    VK    +V
Sbjct: 75  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE----VKHFCPNV 130

Query: 59  PMVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
           P++LVGNK DL +            +  V  E+G  +A    A  +LE SAK K  
Sbjct: 131 PIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEG 186

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 63.6 bits (155), Expect = 4e-14
 Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 20/116 (17%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDT-DDV 58
           L + DT+G+  +  +R L   +    ++ + I+   T + +      E    +++   + 
Sbjct: 57  LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE----IQEFCPNT 112

Query: 59  PMVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
            M+LVG K DL              +  V  +QGA++A+   A T++E SA    N
Sbjct: 113 KMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 62.5 bits (152), Expect = 1e-13
 Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 16/114 (14%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTF-NDLSDLREQILRVKDTDDVPM 60
           L + DTAG E +  +R L        ++ +S+ + ++F N  +    ++       + P+
Sbjct: 55  LGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH--HCPNTPI 112

Query: 61  VLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
           +LVG K DL +               +   QG ++A+   A  +LE SA  +  
Sbjct: 113 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 166

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 62.1 bits (151), Expect = 2e-13
 Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 16/114 (14%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDL-REQILRVKDTDDVPM 60
           L + DT+G+  +  +R L   +    ++ + I+   T + +    + +I       +  M
Sbjct: 78  LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKM 135

Query: 61  VLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
           +LVG K DL              +  V  +QGA++A+   A T++E SA    N
Sbjct: 136 LLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 61.8 bits (150), Expect = 4e-13
 Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 16/110 (14%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDL-REQILRVKDTDDVPM 60
           L + DT+G+  +  +R L   +    +L + I+   T +      R +IL         +
Sbjct: 77  LSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC--PSTRV 134

Query: 61  VLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSAK 97
           +L+G K DL              +  +  EQG ++A+   A  +LE SA 
Sbjct: 135 LLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF 184

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 56.1 bits (135), Expect = 8e-11
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 20/116 (17%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDTD-DV 58
           L + DTAG E +  +R L       F++ +S+ + ++F+ +      E    V+    + 
Sbjct: 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPE----VRHHCPNT 260

Query: 59  PMVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
           P++LVG K DL +               +   QG ++A+   A  +LE SA  +  
Sbjct: 261 PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 316

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 4/74 (5%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK----DTDD 57
             +    G   + A R L ++   G + V          +   +R     +       DD
Sbjct: 76  FHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDD 135

Query: 58  VPMVLVGNKCDLEE 71
           VP+V+  NK DL +
Sbjct: 136 VPIVIQVNKRDLPD 149

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	112
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.95
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.95
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.95
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.95
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.95
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.95
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.95
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.95
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.95
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.95
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.95
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.95
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.95
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.95
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.94
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.94
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.94
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.94
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.94
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.94
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.94
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.94
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.94
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.94
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.94
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.94
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.94
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.94
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.94
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.94
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.94
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.94
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.94
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.94
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.94
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.94
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.94
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.94
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.94
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.94
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.94
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.94
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.94
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.94
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.94
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.94
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.94
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.94
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.94
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.94
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.94
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.94
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.94
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.93
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.93
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.93
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.93
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.93
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.93
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.93
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.93
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.93
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.93
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.93
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.93
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.93
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.93
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.93
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.93
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.93
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.93
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.93
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.93
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.93
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.93
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.93
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.93
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.93
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.92
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.92
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.92
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.92
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.92
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.92
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.92
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.92
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.92
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.92
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.92
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.92
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.91
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.91
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.91
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.91
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.9
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.9
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.83
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.9
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.89
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.89
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.89
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.88
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.88
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.88
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.88
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.88
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.88
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.87
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.87
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.87
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.86
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.85
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.85
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.84
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.83
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.83
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.82
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.82
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.82
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.82
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.81
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.81
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.81
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.8
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.79
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.79
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.79
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.79
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.77
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.77
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.77
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.77
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.76
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.76
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.76
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.75
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.75
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.75
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.74
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.74
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.73
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.72
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.71
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.7
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.7
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.69
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.69
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.69
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.69
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.68
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.68
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.67
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.67
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.66
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.66
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.66
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.66
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.65
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.64
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.64
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.64
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.64
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.63
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.63
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.62
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.61
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.6
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.6
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.58
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.57
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.55
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.55
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.52
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.5
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.49
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.49
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.49
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.48
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.48
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.47
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.47
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.45
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.45
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.43
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.41
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.39
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.37
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.36
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.34
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.33
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.32
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.31
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.29
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.27
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.25
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.24
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.22
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.17
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.17
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.16
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.15
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.13
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.09
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.07
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.04
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.03
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.02
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.01
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.99
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.99
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.92
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.84
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.71
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.69
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.96
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	97.89
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.62
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	97.24
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.03
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.87
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.84
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.62
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.51
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	96.22
3end_A	307	Light-independent protochlorophyllide reductase ir	96.11
3cwq_A	209	Para family chromosome partitioning protein; alpha	96.08
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	95.72
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	94.89
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	94.4
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	94.18
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	94.04
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	93.81
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	93.81
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	93.8
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	92.53
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	92.22
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	91.69
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	90.8
3ez9_A	403	Para; DNA binding, winged-HTH, partition, biosynth	90.18
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	90.0
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	89.71
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	88.89
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	88.85
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	87.23
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	86.46
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	86.36
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	85.82
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	82.39
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	81.28
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	80.75

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=2.7e-32  Score=168.99  Aligned_cols=109  Identities=32%  Similarity=0.501  Sum_probs=102.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      ++||||||+++|..+++.++++++++++|||++++.||+.+..|+..+..... .++|+++||||+|+.+.+.++.+++.
T Consensus        64 l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~-~~~piilVgNK~Dl~~~r~V~~~e~~  142 (216)
T 4dkx_A           64 LQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGE  142 (216)
T ss_dssp             EEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHH
T ss_pred             EEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcC-CCCeEEEEeeccchHhcCcccHHHHh
Confidence            68999999999999999999999999999999999999999999999987653 57899999999999888889999999


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++++++++++|||++|.||+++|+.++.
T Consensus       143 ~~a~~~~~~~~e~SAktg~nV~e~F~~i~~  172 (216)
T 4dkx_A          143 RKAKELNVMFIETSAKAGYNVKQLFRRVAA  172 (216)
T ss_dssp             HHHHHHTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred             hHHHHhCCeeEEEeCCCCcCHHHHHHHHHH
Confidence            999999999999999999999999998863

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.95  E-value=1.8e-27  Score=141.02  Aligned_cols=110  Identities=35%  Similarity=0.532  Sum_probs=85.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+.+.+..+...
T Consensus        51 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~  130 (166)
T 3q72_A           51 LMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGR  130 (166)
T ss_dssp             EEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHH
T ss_pred             EEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHH
Confidence            68999999999999999999999999999999999999999999999887655568999999999999877788888888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++...+++++++||++|.|++++|+++.+
T Consensus       131 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  160 (166)
T 3q72_A          131 ACAVVFDCKFIETSAALHHNVQALFEGVVR  160 (166)
T ss_dssp             HHHHHTTCEEEECBGGGTBSHHHHHHHHHH
T ss_pred             HHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Confidence            899999999999999999999999999864

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.95  E-value=3.3e-27  Score=142.02  Aligned_cols=110  Identities=42%  Similarity=0.713  Sum_probs=101.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+.+.+..++..
T Consensus        68 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~  147 (183)
T 3kkq_A           68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGK  147 (183)
T ss_dssp             EEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHH
T ss_pred             EEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHH
Confidence            57899999999999999999999999999999999999999999999987666678999999999999877788888899


Q ss_pred             HHHHHhCCcEEEeecC-CCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAK-AKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~-~~~~v~~~~~~l~~  111 (112)
                      ++++.++++++++||+ +|.|++++|+++.+
T Consensus       148 ~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~  178 (183)
T 3kkq_A          148 EMATKYNIPYIETSAKDPPLNVDKTFHDLVR  178 (183)
T ss_dssp             HHHHHHTCCEEEEBCSSSCBSHHHHHHHHHH
T ss_pred             HHHHHhCCeEEEeccCCCCCCHHHHHHHHHH
Confidence            9999999999999999 99999999998864

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.95  E-value=4.7e-27  Score=143.22  Aligned_cols=110  Identities=29%  Similarity=0.481  Sum_probs=98.4

Q ss_pred             ceEEeCCCcccchh-hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            2 LEILDTAGTEQFTA-MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      +++|||+|++++.. ++..+++++|++++|||++++.+++.+..|+..+.......++|+++|+||+|+.+.+.+..++.
T Consensus        74 l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~  153 (195)
T 3cbq_A           74 LVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEG  153 (195)
T ss_dssp             EEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHH
T ss_pred             EEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHH
Confidence            68999999998764 78888999999999999999999999999999988765445799999999999987677778888


Q ss_pred             HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           81 ASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++++.++++++++||++|.|++++|+++++
T Consensus       154 ~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~  184 (195)
T 3cbq_A          154 RHLAGTLSCKHIETSAALHHNTRELFEGAVR  184 (195)
T ss_dssp             HHHHHHTTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHhCCEEEEEcCCCCCCHHHHHHHHHH
Confidence            8899988999999999999999999998864

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.95  E-value=1.8e-27  Score=142.96  Aligned_cols=110  Identities=33%  Similarity=0.546  Sum_probs=99.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.+.....++|+++|+||+|+.+.+.+..++..
T Consensus        56 ~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~  135 (181)
T 3t5g_A           56 LQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGK  135 (181)
T ss_dssp             EEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHH
T ss_pred             EEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHH
Confidence            68999999999999999999999999999999999999999999999988766568999999999999877888889999


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+++.++++++++||++|.|++++|+++.+
T Consensus       136 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  165 (181)
T 3t5g_A          136 ALAESWNAAFLESSAKENQTAVDVFRRIIL  165 (181)
T ss_dssp             HHHHHTTCEEEECCTTSHHHHHHHHHHHHH
T ss_pred             HHHHHhCCcEEEEecCCCCCHHHHHHHHHH
Confidence            999999999999999999999999998864

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.95  E-value=6.1e-27  Score=143.22  Aligned_cols=109  Identities=33%  Similarity=0.460  Sum_probs=99.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+..++..
T Consensus        80 l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~  158 (201)
T 2hup_A           80 LQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQ  158 (201)
T ss_dssp             EEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHH
T ss_pred             EEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHH
Confidence            6899999999999999999999999999999999999999999999988764 356899999999999876677788888


Q ss_pred             HHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +++...++ +++++||++|.|++++|+++.+
T Consensus       159 ~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~  189 (201)
T 2hup_A          159 SLAEHYDILCAIETSAKDSSNVEEAFLRVAT  189 (201)
T ss_dssp             HHHHHTTCSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999 9999999999999999998864

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.95  E-value=6e-27  Score=138.67  Aligned_cols=110  Identities=78%  Similarity=1.108  Sum_probs=100.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+.+.+..++..
T Consensus        53 ~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~  132 (167)
T 1c1y_A           53 LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQ  132 (167)
T ss_dssp             EEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred             EEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHH
Confidence            68999999999999999999999999999999999999999999999888765568999999999999876777788888


Q ss_pred             HHHHHh-CCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAF-ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~-~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++.+ +++++++||++|.|++++|+++.+
T Consensus       133 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  163 (167)
T 1c1y_A          133 NLARQWCNCAFLESSAKSKINVNEIFYDLVR  163 (167)
T ss_dssp             HHHHHTTSCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHccCCcEEEecCCCCCCHHHHHHHHHH
Confidence            888887 789999999999999999999864

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.95  E-value=8.1e-27  Score=138.01  Aligned_cols=110  Identities=44%  Similarity=0.703  Sum_probs=98.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+.+....++..
T Consensus        54 ~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~  133 (168)
T 1u8z_A           54 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAK  133 (168)
T ss_dssp             EEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHH
Confidence            68999999999999999999999999999999999999999999999988776568999999999999876677788888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +++...+++++++||++|.|++++|+++.+
T Consensus       134 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  163 (168)
T 1u8z_A          134 NRADQWNVNYVETSAKTRANVDKVFFDLMR  163 (168)
T ss_dssp             HHHHHHTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHcCCeEEEeCCCCCCCHHHHHHHHHH
Confidence            899889999999999999999999999864

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.95  E-value=4.9e-27  Score=139.49  Aligned_cols=110  Identities=28%  Similarity=0.469  Sum_probs=94.5

Q ss_pred             ceEEeCCCcccchh-hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            2 LEILDTAGTEQFTA-MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      +.+|||||++++.. ++..+++++|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+.+.+..+..
T Consensus        53 ~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~  132 (169)
T 3q85_A           53 LIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEG  132 (169)
T ss_dssp             EEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHH
T ss_pred             EEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHH
Confidence            67999999998865 77778999999999999999999999999999998876556899999999999987778888889


Q ss_pred             HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           81 ASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++++..+++++++||++|.|++++|+++.+
T Consensus       133 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (169)
T 3q85_A          133 RHLAGTLSCKHIETSAALHHNTRELFEGAVR  163 (169)
T ss_dssp             HHHHHHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHcCCcEEEecCccCCCHHHHHHHHHH
Confidence            9999999999999999999999999999864

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.95  E-value=5.1e-27  Score=141.17  Aligned_cols=109  Identities=36%  Similarity=0.606  Sum_probs=85.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++..
T Consensus        59 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~  137 (183)
T 2fu5_C           59 LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGE  137 (183)
T ss_dssp             EEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHH
T ss_pred             EEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHH
Confidence            6899999999999999999999999999999999999999999999987753 256899999999999876777788888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++.++++++++||++|.|++++|+++.+
T Consensus       138 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  167 (183)
T 2fu5_C          138 KLALDYGIKFMETSAKANINVENAFFTLAR  167 (183)
T ss_dssp             HHHHHHTCEEEECCC---CCHHHHHHHHHH
T ss_pred             HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999998864

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.95  E-value=1.4e-26  Score=138.03  Aligned_cols=110  Identities=35%  Similarity=0.545  Sum_probs=91.2

Q ss_pred             ceEEeCCCccc--chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHH
Q psy785            2 LEILDTAGTEQ--FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQ   79 (112)
Q Consensus         2 ~~i~Dt~g~~~--~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~   79 (112)
                      +++|||||++.  +..+...+++++|++++|||++++.+++.+..|+..+.......++|+++|+||+|+.+.+.+..++
T Consensus        54 ~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~  133 (175)
T 2nzj_A           54 LVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEE  133 (175)
T ss_dssp             EEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHH
T ss_pred             EEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHH
Confidence            67999999988  5677888899999999999999999999999999888775444579999999999998767777778


Q ss_pred             HHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           80 GASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ...++..++++++++||++|.|++++|+++.+
T Consensus       134 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  165 (175)
T 2nzj_A          134 GRACAVVFDCKFIETSATLQHNVAELFEGVVR  165 (175)
T ss_dssp             HHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Confidence            88888889999999999999999999999864

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.95  E-value=2.5e-26  Score=140.30  Aligned_cols=110  Identities=44%  Similarity=0.705  Sum_probs=101.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+.+.+..++..
T Consensus        64 ~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~  143 (206)
T 2bov_A           64 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAK  143 (206)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred             EEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHH
Confidence            68999999999999999999999999999999999999999999999988765568999999999999876677788888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++..++++++++||++|.|++++|+++.+
T Consensus       144 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  173 (206)
T 2bov_A          144 NRAEQWNVNYVETSAKTRANVDKVFFDLMR  173 (206)
T ss_dssp             HHHHHHTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred             HHHHHhCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            899889999999999999999999998864

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.95  E-value=9.2e-27  Score=137.65  Aligned_cols=110  Identities=55%  Similarity=0.855  Sum_probs=100.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.+.....+.|+++|+||+|+.+.+.+..+...
T Consensus        53 ~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~  132 (167)
T 1kao_A           53 LEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGR  132 (167)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHH
T ss_pred             EEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHH
Confidence            68999999999999999999999999999999999999999999999888765568999999999999776777778888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++...+++++++||++|.|++++|+++.+
T Consensus       133 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  162 (167)
T 1kao_A          133 ALAEEWGCPFMETSAKSKTMVDELFAEIVR  162 (167)
T ss_dssp             HHHHHHTSCEEEECTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCEEEecCCCCcCHHHHHHHHHH
Confidence            889889999999999999999999998864

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.95  E-value=1.9e-26  Score=139.53  Aligned_cols=110  Identities=29%  Similarity=0.449  Sum_probs=100.1

Q ss_pred             ceEEeCCCcccch-hhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            2 LEILDTAGTEQFT-AMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         2 ~~i~Dt~g~~~~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      +++|||||++++. .++..+++++|++++|+|++++.+++.+..|+..+.+.....+.|+++|+||+|+.+.+.+..+..
T Consensus        71 ~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~  150 (189)
T 1z06_A           71 IQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLA  150 (189)
T ss_dssp             EEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHH
T ss_pred             EEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHH
Confidence            6899999999998 889999999999999999999999999999999998876556899999999999987667778888


Q ss_pred             HHHHHHhCCcEEEeecCCC---CChhHHhhhhcc
Q psy785           81 ASLARAFACTFLETSAKAK---VNSWLCVECTND  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~Sa~~~---~~v~~~~~~l~~  111 (112)
                      .+++...+++++++||++|   .|++++|+++.+
T Consensus       151 ~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~  184 (189)
T 1z06_A          151 QKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAH  184 (189)
T ss_dssp             HHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC-
T ss_pred             HHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHH
Confidence            8899989999999999999   999999999875

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.95  E-value=2.4e-26  Score=138.92  Aligned_cols=110  Identities=30%  Similarity=0.537  Sum_probs=100.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++...+..+++++|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+.+.+..+...
T Consensus        72 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~  151 (195)
T 3bc1_A           72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEAR  151 (195)
T ss_dssp             EEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHH
Confidence            68999999999999999999999999999999999999999999999988765567999999999999876677778888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +++...+++++++||++|.|++++|+++.+
T Consensus       152 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  181 (195)
T 3bc1_A          152 ELAEKYGIPYFETSAANGTNISHAIEMLLD  181 (195)
T ss_dssp             HHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHcCCCEEEEECCCCCCHHHHHHHHHH
Confidence            899889999999999999999999998764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=1.4e-26  Score=141.79  Aligned_cols=109  Identities=34%  Similarity=0.458  Sum_probs=98.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++..
T Consensus        77 l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~  155 (201)
T 2ew1_A           77 LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAE  155 (201)
T ss_dssp             EEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHH
T ss_pred             EEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHH
Confidence            6899999999999999999999999999999999999999999999887754 356899999999999876777788888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +++...+++++++||++|.|++++|+++.+
T Consensus       156 ~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  185 (201)
T 2ew1_A          156 EFSEAQDMYYLETSAKESDNVEKLFLDLAC  185 (201)
T ss_dssp             HHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            888888999999999999999999998763

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.94  E-value=3.8e-26  Score=136.93  Aligned_cols=109  Identities=28%  Similarity=0.416  Sum_probs=99.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++..
T Consensus        63 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~  141 (181)
T 2efe_B           63 FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQ  141 (181)
T ss_dssp             EEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHH
T ss_pred             EEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHH
Confidence            6899999999999999999999999999999999999999999999988764 257899999999999876777788888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++..+++++++||++|.|++++|+++.+
T Consensus       142 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  171 (181)
T 2efe_B          142 TYAQENGLFFMETSAKTATNVKEIFYEIAR  171 (181)
T ss_dssp             HHHHHTTCEEEECCSSSCTTHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            899989999999999999999999999864

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.94  E-value=2.3e-26  Score=136.39  Aligned_cols=109  Identities=30%  Similarity=0.470  Sum_probs=98.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++...+..+++++|++++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+....++..
T Consensus        57 ~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~  135 (170)
T 1r2q_A           57 FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQ  135 (170)
T ss_dssp             EEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHH
T ss_pred             EEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHH
Confidence            6899999999999999999999999999999999999999999999887753 257899999999999766667778888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +++...+++++++||++|.|++++|+++.+
T Consensus       136 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~  165 (170)
T 1r2q_A          136 SYADDNSLLFMETSAKTSMNVNEIFMAIAK  165 (170)
T ss_dssp             HHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            888889999999999999999999999864

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=2e-26  Score=138.09  Aligned_cols=109  Identities=33%  Similarity=0.609  Sum_probs=91.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+...
T Consensus        62 ~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~  140 (180)
T 2g6b_A           62 LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGE  140 (180)
T ss_dssp             EEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHH
Confidence            68999999999999999999999999999999999999999999998887643 57899999999999877777778888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++..+++++++||++|.|++++|+++.+
T Consensus       141 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  170 (180)
T 2g6b_A          141 KLAKEYGLPFMETSAKTGLNVDLAFTAIAK  170 (180)
T ss_dssp             HHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            888889999999999999999999998764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.94  E-value=7.2e-27  Score=139.77  Aligned_cols=110  Identities=31%  Similarity=0.452  Sum_probs=97.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCCc-EEEEeeCCCCCCcccccHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVP-MVLVGNKCDLEEERVVGKEQ   79 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p-~ivv~nK~D~~~~~~~~~~~   79 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+...... .+.| +++|+||+|+.+.+.+..++
T Consensus        58 ~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~  137 (178)
T 2hxs_A           58 LQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEK  137 (178)
T ss_dssp             EEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHH
T ss_pred             EEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHH
Confidence            789999999999999999999999999999999999999999999888765321 2455 78999999998766777788


Q ss_pred             HHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           80 GASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ...+++..+++++++||++|.|++++|+++.+
T Consensus       138 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  169 (178)
T 2hxs_A          138 HLRFCQENGFSSHFVSAKTGDSVFLCFQKVAA  169 (178)
T ss_dssp             HHHHHHHHTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Confidence            88899989999999999999999999999864

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.94  E-value=2.1e-26  Score=138.46  Aligned_cols=110  Identities=44%  Similarity=0.705  Sum_probs=101.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+.+.+..++..
T Consensus        68 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~  147 (187)
T 2a9k_A           68 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAK  147 (187)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHH
T ss_pred             EEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHH
Confidence            68999999999999999999999999999999999999999999999988776568999999999999876677788888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++.++++++++||++|.|++++|+++.+
T Consensus       148 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  177 (187)
T 2a9k_A          148 NRAEQWNVNYVETSAKTRANVDKVFFDLMR  177 (187)
T ss_dssp             HHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHcCCeEEEeCCCCCCCHHHHHHHHHH
Confidence            899989999999999999999999999864

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.94  E-value=1.5e-26  Score=138.57  Aligned_cols=110  Identities=45%  Similarity=0.745  Sum_probs=99.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.+.....++|+++|+||+|+.+.+.+..+...
T Consensus        59 ~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~  138 (181)
T 2fn4_A           59 LDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEAS  138 (181)
T ss_dssp             EEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHH
T ss_pred             EEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHH
Confidence            67999999999999999999999999999999999999999999999876655567999999999999876777778888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++...+++++++||++|.|++++|+++.+
T Consensus       139 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  168 (181)
T 2fn4_A          139 AFGASHHVAYFEASAKLRLNVDEAFEQLVR  168 (181)
T ss_dssp             HHHHHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            888888999999999999999999998864

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.94  E-value=5.5e-27  Score=143.23  Aligned_cols=110  Identities=31%  Similarity=0.514  Sum_probs=98.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+.+.+...+..
T Consensus        74 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~  153 (201)
T 3oes_A           74 LHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGK  153 (201)
T ss_dssp             EEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred             EEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHH
Confidence            68999999999999999999999999999999999999999999999988665567999999999999877788888889


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++...+++++++||++|.|++++|+++.+
T Consensus       154 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  183 (201)
T 3oes_A          154 KLAESWGATFMESSARENQLTQGIFTKVIQ  183 (201)
T ss_dssp             HHHHHHTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999998864

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.94  E-value=4.2e-26  Score=135.26  Aligned_cols=109  Identities=33%  Similarity=0.474  Sum_probs=98.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc---ccccHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE---RVVGKE   78 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~---~~~~~~   78 (112)
                      +++|||||++++...+..+++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.   +.+..+
T Consensus        54 ~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~  132 (170)
T 1ek0_A           54 FEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVARE  132 (170)
T ss_dssp             EEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHH
T ss_pred             EEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHH
Confidence            6899999999999999999999999999999999999999999999887764 357899999999999754   566777


Q ss_pred             HHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           79 QGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        79 ~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ...+++...+++++++||++|.|++++|+++.+
T Consensus       133 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  165 (170)
T 1ek0_A          133 EGEKLAEEKGLLFFETSAKTGENVNDVFLGIGE  165 (170)
T ss_dssp             HHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHT
T ss_pred             HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            888888889999999999999999999999875

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.94  E-value=4.9e-26  Score=138.99  Aligned_cols=109  Identities=41%  Similarity=0.666  Sum_probs=99.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+...
T Consensus        59 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~  137 (203)
T 1zbd_A           59 LQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGR  137 (203)
T ss_dssp             EEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHH
T ss_pred             EEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHH
Confidence            6899999999999999999999999999999999999999999999987753 356899999999999876777788888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +++..++++++++||++|.|++++|+++.+
T Consensus       138 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  167 (203)
T 1zbd_A          138 QLADHLGFEFFEASAKDNINVKQTFERLVD  167 (203)
T ss_dssp             HHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             HHHHHCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999999999999998763

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.94  E-value=4.2e-26  Score=136.34  Aligned_cols=109  Identities=35%  Similarity=0.480  Sum_probs=98.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++...+..+++++|++++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++.+
T Consensus        66 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~  144 (179)
T 1z0f_A           66 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN-PNTVIILIGNKADLEAQRDVTYEEAK  144 (179)
T ss_dssp             EEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHH
T ss_pred             EEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccccccccCHHHHH
Confidence            68999999999999999999999999999999999999999999988877542 57899999999999876777788888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++..+++++++||++|.|++++|+++.+
T Consensus       145 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  174 (179)
T 1z0f_A          145 QFAEENGLLFLEASAKTGENVEDAFLEAAK  174 (179)
T ss_dssp             HHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999998764

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.94  E-value=3e-26  Score=137.22  Aligned_cols=108  Identities=35%  Similarity=0.526  Sum_probs=99.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||||++++..++..+++++|++++|+|++++.+++.+..|+..+....  .+.|+++|+||+|+.+.+........
T Consensus        60 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~  137 (181)
T 3tw8_B           60 LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAY  137 (181)
T ss_dssp             EEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHH
T ss_pred             EEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHH
Confidence            6899999999999999999999999999999999999999999999987754  57899999999999877777788888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++...+++++++||++|.|++++|+++.+
T Consensus       138 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  167 (181)
T 3tw8_B          138 KFAGQMGIQLFETSAKENVNVEEMFNCITE  167 (181)
T ss_dssp             HHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            999999999999999999999999998864

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.94  E-value=2.7e-26  Score=139.13  Aligned_cols=109  Identities=38%  Similarity=0.562  Sum_probs=98.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++..
T Consensus        72 ~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~  150 (191)
T 2a5j_A           72 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGE  150 (191)
T ss_dssp             EEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHH
T ss_pred             EEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHH
Confidence            6899999999999999999999999999999999999999999999987753 357899999999999876777788888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +++...+++++++||++|.|++++|+++.+
T Consensus       151 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  180 (191)
T 2a5j_A          151 AFAREHGLIFMETSAKTACNVEEAFINTAK  180 (191)
T ss_dssp             HHHHHHTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999998864

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=3.1e-26  Score=139.02  Aligned_cols=109  Identities=28%  Similarity=0.463  Sum_probs=99.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+..++..
T Consensus        74 ~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~  152 (192)
T 2fg5_A           74 FLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAK  152 (192)
T ss_dssp             EEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHH
T ss_pred             EEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHH
Confidence            6899999999999999999999999999999999999999999999987754 357899999999999766677788888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++..+++++++||++|.|++++|+++.+
T Consensus       153 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  182 (192)
T 2fg5_A          153 EYAESIGAIVVETSAKNAINIEELFQGISR  182 (192)
T ss_dssp             HHHHTTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            999989999999999999999999999864

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.94  E-value=5.2e-26  Score=137.94  Aligned_cols=109  Identities=36%  Similarity=0.574  Sum_probs=100.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+......
T Consensus        67 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~  145 (196)
T 3tkl_A           67 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDLTTKKVVDYTTAK  145 (196)
T ss_dssp             EEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCTTTCCSCHHHHH
T ss_pred             EEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECcccccccccCHHHHH
Confidence            68999999999999999999999999999999999999999999999877643 57899999999999877778888888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +++..++++++++||++|.|++++|+++.+
T Consensus       146 ~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  175 (196)
T 3tkl_A          146 EFADSLGIPFLETSAKNATNVEQSFMTMAA  175 (196)
T ss_dssp             HHHHHTTCCEEEECTTTCTTHHHHHHHHHH
T ss_pred             HHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999998864

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=4.2e-26  Score=140.80  Aligned_cols=110  Identities=35%  Similarity=0.540  Sum_probs=95.5

Q ss_pred             ceEEeCCCccc-chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            2 LEILDTAGTEQ-FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         2 ~~i~Dt~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      +.+|||+|++. +..+.+.++++++++++|||++++.+|+.+..|...+.+.....++|+++|+||+|+.+.+.+..++.
T Consensus        89 l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~  168 (211)
T 2g3y_A           89 IILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEG  168 (211)
T ss_dssp             EEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHH
T ss_pred             EEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHH
Confidence            57899999987 56677778899999999999999999999999988887643335799999999999976667777777


Q ss_pred             HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           81 ASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..++..+++++++|||++|.||+++|+++++
T Consensus       169 ~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~  199 (211)
T 2g3y_A          169 RACAVVFDCKFIETSAAVQHNVKELFEGIVR  199 (211)
T ss_dssp             HHHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            8888888999999999999999999998864

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.94  E-value=4e-26  Score=137.48  Aligned_cols=109  Identities=31%  Similarity=0.441  Sum_probs=98.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++...+..+++++|++++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+...+..
T Consensus        61 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~  139 (186)
T 2bme_A           61 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDADREVTFLEAS  139 (186)
T ss_dssp             EEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccccccccCHHHHH
Confidence            68999999999999999999999999999999999999999999988876543 57899999999999776677778888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +++...+++++++||++|.|++++|+++.+
T Consensus       140 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  169 (186)
T 2bme_A          140 RFAQENELMFLETSALTGENVEEAFVQCAR  169 (186)
T ss_dssp             HHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence            899889999999999999999999998764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=1.5e-26  Score=140.28  Aligned_cols=109  Identities=41%  Similarity=0.669  Sum_probs=100.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+....++..
T Consensus        74 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~  152 (191)
T 3dz8_A           74 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS-WDNAQVILVGNKCDMEEERVVPTEKGQ  152 (191)
T ss_dssp             EEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHH
T ss_pred             EEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHH
Confidence            7899999999999999999999999999999999999999999999987753 357899999999999877778888888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++...+++++++||++|.|++++|+++.+
T Consensus       153 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  182 (191)
T 3dz8_A          153 LLAEQLGFDFFEASAKENISVRQAFERLVD  182 (191)
T ss_dssp             HHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            999999999999999999999999998864

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.94  E-value=3.7e-26  Score=138.12  Aligned_cols=105  Identities=22%  Similarity=0.406  Sum_probs=93.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC--CcccccHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE--EERVVGKEQ   79 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~--~~~~~~~~~   79 (112)
                      +++|||+|++++.     +++++|++++|||++++.+++.+..|+..+.......+.|+++|+||+|+.  ..+.+..++
T Consensus        69 l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~  143 (184)
T 3ihw_A           69 LLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSR  143 (184)
T ss_dssp             EEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHH
T ss_pred             EEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHH
Confidence            6789999999876     778999999999999999999999999999876544678999999999994  456677888


Q ss_pred             HHHHHHHhC-CcEEEeecCCCCChhHHhhhhcc
Q psy785           80 GASLARAFA-CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        80 ~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..+++..++ ++++++||++|.|++++|+++.+
T Consensus       144 ~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~  176 (184)
T 3ihw_A          144 ARKLSTDLKRCTYYETCATYGLNVERVFQDVAQ  176 (184)
T ss_dssp             HHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHH
T ss_pred             HHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHH
Confidence            899999887 89999999999999999999864

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.94  E-value=1.5e-26  Score=142.76  Aligned_cols=108  Identities=24%  Similarity=0.410  Sum_probs=98.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc--------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFND-LSDLREQILRVKDTDDVPMVLVGNKCDLEEE--------   72 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~--------   72 (112)
                      +++|||||++++..++..+++++|++++|||++++.+++. +..|+..+....  .+.|+++|+||+|+.+.        
T Consensus        77 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~  154 (214)
T 3q3j_B           77 LSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELS  154 (214)
T ss_dssp             EEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHH
T ss_pred             EEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhc
Confidence            6899999999999999999999999999999999999998 689999998764  57999999999999753        


Q ss_pred             ----ccccHHHHHHHHHHhCC-cEEEeecCCCCC-hhHHhhhhcc
Q psy785           73 ----RVVGKEQGASLARAFAC-TFLETSAKAKVN-SWLCVECTND  111 (112)
Q Consensus        73 ----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-v~~~~~~l~~  111 (112)
                          +.+..++..++++.+++ ++++|||++|.| ++++|+.+.+
T Consensus       155 ~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~  199 (214)
T 3q3j_B          155 HQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASM  199 (214)
T ss_dssp             HTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHH
T ss_pred             ccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHH
Confidence                56778889999999999 999999999998 9999998763

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.94  E-value=4.1e-26  Score=138.07  Aligned_cols=109  Identities=40%  Similarity=0.651  Sum_probs=98.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++.+
T Consensus        73 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~  151 (189)
T 2gf9_A           73 LQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGR  151 (189)
T ss_dssp             EEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHH
T ss_pred             EEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHH
Confidence            6899999999999999999999999999999999999999999999887753 357899999999999876777778888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++.++++++++||++|.|++++|+++.+
T Consensus       152 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  181 (189)
T 2gf9_A          152 RLADDLGFEFFEASAKENINVKQVFERLVD  181 (189)
T ss_dssp             HHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999999999999998864

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.94  E-value=2.3e-26  Score=136.61  Aligned_cols=109  Identities=31%  Similarity=0.474  Sum_probs=91.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||||++++..++..+++++|++++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++..
T Consensus        57 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~  135 (170)
T 1z08_A           57 LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG-NEICLCIVGNKIDLEKERHVSIQEAE  135 (170)
T ss_dssp             EEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHG-GGSEEEEEEECGGGGGGCCSCHHHHH
T ss_pred             EEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEECcccccccccCHHHHH
Confidence            68999999999999999999999999999999999999999999988876542 46899999999999876777788888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++..+++++++||++|.|++++|+++.+
T Consensus       136 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  165 (170)
T 1z08_A          136 SYAESVGAKHYHTSAKQNKGIEELFLDLCK  165 (170)
T ss_dssp             HHHHHTTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            899999999999999999999999999864

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.94  E-value=8.2e-26  Score=136.19  Aligned_cols=109  Identities=50%  Similarity=0.805  Sum_probs=96.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+ +....+...
T Consensus        54 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~  132 (189)
T 4dsu_A           54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQ  132 (189)
T ss_dssp             EEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHH
T ss_pred             EEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHH
Confidence            6789999999999999999999999999999999999999999999998876667899999999999974 455677888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++...+++++++||++|.|++++|+++.+
T Consensus       133 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  162 (189)
T 4dsu_A          133 DLARSYGIPFIETSAKTRQGVDDAFYTLVR  162 (189)
T ss_dssp             HHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            899999999999999999999999998864

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.94  E-value=1.8e-26  Score=142.25  Aligned_cols=110  Identities=31%  Similarity=0.533  Sum_probs=99.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      ++||||||++++...+..+++++|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+.+.+..+...
T Consensus        86 l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~  165 (217)
T 2f7s_A           86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAR  165 (217)
T ss_dssp             EEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHH
T ss_pred             EEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHH
Confidence            78999999999999999999999999999999999999999999888766543367999999999999876677788888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +++...+++++++||++|.|++++|+++.+
T Consensus       166 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  195 (217)
T 2f7s_A          166 ELADKYGIPYFETSAATGQNVEKAVETLLD  195 (217)
T ss_dssp             HHHHHTTCCEEEEBTTTTBTHHHHHHHHHH
T ss_pred             HHHHHCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            999999999999999999999999998864

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.94  E-value=3.5e-26  Score=139.71  Aligned_cols=110  Identities=22%  Similarity=0.256  Sum_probs=89.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCCcEEEEeeCCCCCC-cccccHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD--TDDVPMVLVGNKCDLEE-ERVVGKE   78 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~~~-~~~~~~~   78 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.....  ..++|+++|+||+|+.+ .+.+..+
T Consensus        75 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~  154 (208)
T 2yc2_C           75 LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLD  154 (208)
T ss_dssp             EEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHH
T ss_pred             EEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHH
Confidence            78999999999999999999999999999999999999999999999988654  25789999999999987 6677788


Q ss_pred             HHHHHHHHhCCcEEEeecCC-CCChhHHhhhhcc
Q psy785           79 QGASLARAFACTFLETSAKA-KVNSWLCVECTND  111 (112)
Q Consensus        79 ~~~~~~~~~~~~~~~~Sa~~-~~~v~~~~~~l~~  111 (112)
                      +..++++.++++++++||++ |.|++++|+++.+
T Consensus       155 ~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~  188 (208)
T 2yc2_C          155 MAQDWATTNTLDFFDVSANPPGKDADAPFLSIAT  188 (208)
T ss_dssp             HHHHHHHHTTCEEEECCC-------CHHHHHHHH
T ss_pred             HHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHH
Confidence            88899999999999999999 9999999998864

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.94  E-value=1.6e-26  Score=139.93  Aligned_cols=109  Identities=28%  Similarity=0.443  Sum_probs=94.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCCcEEEEeeCCCCCCcccccHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD--TDDVPMVLVGNKCDLEEERVVGKEQ   79 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~   79 (112)
                      +++|||||++++..+ ..+++++|++++|||++++.+++.+..|+..+.....  ..+.|+++|+||+|+.+.+.+..++
T Consensus        71 l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~  149 (187)
T 3c5c_A           71 LRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAE  149 (187)
T ss_dssp             EEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHH
T ss_pred             EEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHH
Confidence            689999999988775 6689999999999999999999999999999887642  2578999999999998767778888


Q ss_pred             HHHHHHHhCCcEEEeec-CCCCChhHHhhhhcc
Q psy785           80 GASLARAFACTFLETSA-KAKVNSWLCVECTND  111 (112)
Q Consensus        80 ~~~~~~~~~~~~~~~Sa-~~~~~v~~~~~~l~~  111 (112)
                      ..++++.++++++++|| ++|.|++++|+.+.+
T Consensus       150 ~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~  182 (187)
T 3c5c_A          150 GVALAGRFGCLFFEVSACLDFEHVQHVFHEAVR  182 (187)
T ss_dssp             HHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCcEEEEeecCccccHHHHHHHHHH
Confidence            89999999999999999 899999999998864

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.94  E-value=6.4e-26  Score=138.80  Aligned_cols=109  Identities=38%  Similarity=0.530  Sum_probs=98.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+...
T Consensus        59 ~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~  137 (206)
T 2bcg_Y           59 LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAK  137 (206)
T ss_dssp             EEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHH
T ss_pred             EEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHH
Confidence            6899999999999999999999999999999999999999999999887754 357899999999999876777778888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++...+++++++||++|.|++++|+++.+
T Consensus       138 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  167 (206)
T 2bcg_Y          138 EFADANKMPFLETSALDSTNVEDAFLTMAR  167 (206)
T ss_dssp             HHHHHTTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            888889999999999999999999998864

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=4.1e-26  Score=138.82  Aligned_cols=109  Identities=39%  Similarity=0.594  Sum_probs=99.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||+++ ...+..+++++|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+.+.+..++..
T Consensus        78 ~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~  156 (196)
T 2atv_A           78 MEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGE  156 (196)
T ss_dssp             EEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHH
T ss_pred             EEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHH
Confidence            78999999998 77888999999999999999999999999999999888765568999999999999876777788888


Q ss_pred             HHHHHhCCcEEEeecCCCC-ChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKV-NSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~-~v~~~~~~l~~  111 (112)
                      +++..++++++++||++|. |++++|+++.+
T Consensus       157 ~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~  187 (196)
T 2atv_A          157 KLATELACAFYECSACTGEGNITEIFYELCR  187 (196)
T ss_dssp             HHHHHHTSEEEECCTTTCTTCHHHHHHHHHH
T ss_pred             HHHHHhCCeEEEECCCcCCcCHHHHHHHHHH
Confidence            8999899999999999999 99999998864

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.94  E-value=1.2e-25  Score=133.45  Aligned_cols=109  Identities=30%  Similarity=0.459  Sum_probs=98.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ....|+++|+||+|+.+.+.+..+...
T Consensus        57 ~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~iilv~nK~Dl~~~~~v~~~~~~  135 (170)
T 1z0j_A           57 FLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG-PPSIVVAIAGNKCDLTDVREVMERDAK  135 (170)
T ss_dssp             EEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTSEEEEEEECTTCGGGCCSCHHHHH
T ss_pred             EEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECCccccccccCHHHHH
Confidence            6799999999999999999999999999999999999999999999887753 367899999999999876777778888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++...+++++++||++|.|++++|+++.+
T Consensus       136 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~  165 (170)
T 1z0j_A          136 DYADSIHAIFVETSAKNAININELFIEISR  165 (170)
T ss_dssp             HHHHHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            888888999999999999999999998864

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.94  E-value=5.9e-26  Score=137.85  Aligned_cols=108  Identities=28%  Similarity=0.506  Sum_probs=96.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEeeCCCCCCc--ccccHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEEE--RVVGKE   78 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~   78 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+ ..|+..+....  .++|+++|+||+|+.+.  +.+..+
T Consensus        73 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~  150 (194)
T 3reg_A           73 LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI--DTAKTVLVGLKVDLRKDGSDDVTKQ  150 (194)
T ss_dssp             EEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTSEEEEEEECGGGCCTTTTCCCHH
T ss_pred             EEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccCCCCcccHH
Confidence            68999999999999999999999999999999999999997 67888887653  56899999999999753  567788


Q ss_pred             HHHHHHHHhCCc-EEEeecCCCCChhHHhhhhcc
Q psy785           79 QGASLARAFACT-FLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        79 ~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +..++++.++++ ++++||++|.|++++|+++.+
T Consensus       151 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  184 (194)
T 3reg_A          151 EGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVD  184 (194)
T ss_dssp             HHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHH
Confidence            888999999997 999999999999999998864

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=9e-26  Score=136.95  Aligned_cols=108  Identities=23%  Similarity=0.434  Sum_probs=96.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCc--------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEE--------   72 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~--------   72 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+. .|+..+.+..  .++|+++|+||+|+.+.        
T Consensus        68 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~  145 (194)
T 2atx_A           68 LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLN  145 (194)
T ss_dssp             EEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHT
T ss_pred             EEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcc
Confidence            689999999999999999999999999999999999999987 7988888753  47999999999999753        


Q ss_pred             ----ccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           73 ----RVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        73 ----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                          +.+..++..++++.+++ +++++||++|.|++++|+++.+
T Consensus       146 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  189 (194)
T 2atx_A          146 DMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII  189 (194)
T ss_dssp             TTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHH
T ss_pred             cccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence                35667788889998888 9999999999999999998864

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.94  E-value=4.1e-26  Score=135.18  Aligned_cols=108  Identities=31%  Similarity=0.519  Sum_probs=98.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||||++++..++..+++++|++++|+|++++.+++.+..|+..+....  .+.|+++|+||+|+.+.+.+..++..
T Consensus        56 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~  133 (168)
T 1z2a_A           56 LMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAE  133 (168)
T ss_dssp             EEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHH
T ss_pred             EEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHH
Confidence            6899999999999999999999999999999999999999999999988765  57899999999999876677778888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++..+++++++||++|.|++++|+++.+
T Consensus       134 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  163 (168)
T 1z2a_A          134 GLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  163 (168)
T ss_dssp             HHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             HHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Confidence            899999999999999999999999998764

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=6.6e-26  Score=134.62  Aligned_cols=110  Identities=41%  Similarity=0.673  Sum_probs=97.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCCCCCcccccHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.+.... .+.|+++|+||+|+.+.+.+.....
T Consensus        53 ~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~  132 (172)
T 2erx_A           53 LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEA  132 (172)
T ss_dssp             EEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHH
T ss_pred             EEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHH
Confidence            689999999999999999999999999999999999999988898888775432 5789999999999987667777778


Q ss_pred             HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           81 ASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..++...+++++++||++|.|++++|+++.+
T Consensus       133 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  163 (172)
T 2erx_A          133 EALARTWKCAFMETSAKLNHNVKELFQELLN  163 (172)
T ss_dssp             HHHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHhCCeEEEecCCCCcCHHHHHHHHHH
Confidence            8888888999999999999999999999864

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.94  E-value=5.6e-26  Score=138.72  Aligned_cols=108  Identities=13%  Similarity=0.187  Sum_probs=88.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..+++.+++++|++++|+|++++.+++.+..|+..+.+.....++|+++|+||+|+.+  ..+.++..
T Consensus        71 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~  148 (198)
T 1f6b_A           71 FTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLR  148 (198)
T ss_dssp             EEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHH
T ss_pred             EEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHH
Confidence            6899999999999999999999999999999999999999999999887754446799999999999974  44566666


Q ss_pred             HHHHH-----------------hCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARA-----------------FACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~-----------------~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +++..                 .++++++|||++|.|++++|+++.+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~  195 (198)
T 1f6b_A          149 EMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ  195 (198)
T ss_dssp             HHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred             HHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHH
Confidence            65542                 2358999999999999999999875

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.94  E-value=4.1e-26  Score=139.39  Aligned_cols=109  Identities=32%  Similarity=0.429  Sum_probs=98.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+...+..
T Consensus        76 l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~  154 (200)
T 2o52_A           76 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKDLDPEREVTFLEAS  154 (200)
T ss_dssp             EEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC-TTCEEEEEEECGGGGGGCCSCHHHHH
T ss_pred             EEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCcccccccCHHHHH
Confidence            68999999999999999999999999999999999999999999998876543 57899999999999776677778888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +++...+++++++||++|.|++++|+++.+
T Consensus       155 ~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~  184 (200)
T 2o52_A          155 RFAQENELMFLETSALTGENVEEAFLKCAR  184 (200)
T ss_dssp             HHHHHTTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            889889999999999999999999998764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=9.2e-26  Score=136.65  Aligned_cols=109  Identities=35%  Similarity=0.504  Sum_probs=97.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+ +.+..++..
T Consensus        66 ~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~  144 (195)
T 1x3s_A           66 LAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGL  144 (195)
T ss_dssp             EEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHH
T ss_pred             EEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHH
Confidence            6899999999999999999999999999999999999999999999988765446799999999999954 556677788


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +++...+++++++||++|.|++++|+++.+
T Consensus       145 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  174 (195)
T 1x3s_A          145 KFARKHSMLFIEASAKTCDGVQCAFEELVE  174 (195)
T ss_dssp             HHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence            888889999999999999999999998864

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.94  E-value=3.3e-26  Score=138.72  Aligned_cols=106  Identities=18%  Similarity=0.251  Sum_probs=92.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCC------ChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSIT------AQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV   75 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~   75 (112)
                      +++|||||++++..+++.+++++|++++|+|++      +.++++.+..|+..+..  ...+.|+++|+||+|+.+  ..
T Consensus        76 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~--~~~~~piilv~NK~Dl~~--~~  151 (198)
T 3t1o_A           76 FHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL--TLDDVPIVIQVNKRDLPD--AL  151 (198)
T ss_dssp             EEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC--CTTSSCEEEEEECTTSTT--CC
T ss_pred             EEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc--ccCCCCEEEEEEchhccc--cc
Confidence            789999999999999999999999999999999      56778888888877732  236799999999999975  36


Q ss_pred             cHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           76 GKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        76 ~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..++..++++..++ +++++||++|.|++++|+++.+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  188 (198)
T 3t1o_A          152 PVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSR  188 (198)
T ss_dssp             CHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHH
Confidence            67888888888899 9999999999999999999864

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.94  E-value=1.1e-25  Score=134.55  Aligned_cols=109  Identities=33%  Similarity=0.510  Sum_probs=98.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||||++++...+..+++++|++++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+...+..
T Consensus        65 ~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~  143 (179)
T 2y8e_A           65 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDKRQVSTEEGE  143 (179)
T ss_dssp             EEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECGGGGGGCCSCHHHHH
T ss_pred             EEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCcccccCcCCHHHHH
Confidence            68999999999999999999999999999999999999999999998877542 56899999999999876777778888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++...+++++++||++|.|++++|+++.+
T Consensus       144 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  173 (179)
T 2y8e_A          144 RKAKELNVMFIETSAKAGYNVKQLFRRVAA  173 (179)
T ss_dssp             HHHHHHTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            888889999999999999999999998864

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.94  E-value=4.6e-26  Score=141.18  Aligned_cols=109  Identities=29%  Similarity=0.417  Sum_probs=95.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+..++..
T Consensus        64 ~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~  142 (223)
T 3cpj_B           64 AQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESK  142 (223)
T ss_dssp             EEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHH
T ss_pred             EEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHH
Confidence            6899999999999999999999999999999999999999999999987753 357899999999999876677778888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++...+++++++||++|.|++++|+++.+
T Consensus       143 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  172 (223)
T 3cpj_B          143 TFAQENQLLFTETSALNSENVDKAFEELIN  172 (223)
T ss_dssp             HHHHHTTCEEEECCCC-CCCHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            899889999999999999999999998763

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.93  E-value=4.1e-26  Score=136.88  Aligned_cols=108  Identities=27%  Similarity=0.497  Sum_probs=94.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCccc------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEERV------   74 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~------   74 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+. .|+..+....  .+.|+++|+||+|+.+.+.      
T Consensus        58 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~  135 (182)
T 3bwd_D           58 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHP  135 (182)
T ss_dssp             CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC-
T ss_pred             EEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccc
Confidence            679999999999999999999999999999999999999987 6988887754  4789999999999865443      


Q ss_pred             ----ccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           75 ----VGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        75 ----~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                          +..++..+++..++. +++++||++|.|++++|+++.+
T Consensus       136 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  177 (182)
T 3bwd_D          136 GAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIR  177 (182)
T ss_dssp             -CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHH
Confidence                366778888888887 9999999999999999998864

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.93  E-value=1.1e-25  Score=136.74  Aligned_cols=109  Identities=37%  Similarity=0.561  Sum_probs=97.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++.+
T Consensus        77 l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilV~NK~Dl~~~~~v~~~~~~  155 (192)
T 2il1_A           77 LQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA-SEDAELLLVGNKLDCETDREITRQQGE  155 (192)
T ss_dssp             EEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHH
Confidence            6899999999999999999999999999999999999999999988887653 357899999999999876777777888


Q ss_pred             HHHHHh-CCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAF-ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~-~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++.. +++++++||++|.|++++|+++.+
T Consensus       156 ~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~  186 (192)
T 2il1_A          156 KFAQQITGMRFCEASAKDNFNVDEIFLKLVD  186 (192)
T ss_dssp             HHHHTSTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHhcCCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            888874 789999999999999999998864

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.93  E-value=1.2e-25  Score=137.13  Aligned_cols=109  Identities=31%  Similarity=0.530  Sum_probs=95.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC------Ccccc
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE------EERVV   75 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~------~~~~~   75 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.      ..+.+
T Consensus        79 l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~v  157 (199)
T 2p5s_A           79 LQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAA-HETVPIMLVGNKADIRDTAATEGQKCV  157 (199)
T ss_dssp             EEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC----CCEEEEEECGGGHHHHHHTTCCCC
T ss_pred             EEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccccccccccccccc
Confidence            6899999999999999999999999999999999999999999998887653 2468999999999986      33556


Q ss_pred             cHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           76 GKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..+...+++...+++++++||++|.|++++|+++.+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~  193 (199)
T 2p5s_A          158 PGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAR  193 (199)
T ss_dssp             CHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            677888888889999999999999999999998864

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.93  E-value=4.7e-25  Score=130.05  Aligned_cols=109  Identities=49%  Similarity=0.771  Sum_probs=98.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||||++++..++..+++++|++++++|++++.+++.+..|+..+.......+.|+++++||+|+.+ +....+...
T Consensus        53 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~  131 (166)
T 2ce2_X           53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQ  131 (166)
T ss_dssp             EEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHH
T ss_pred             EEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHH
Confidence            6799999999999999999999999999999999999999999999988876556799999999999876 455677788


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++.++++++++||++|.|++++++++.+
T Consensus       132 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  161 (166)
T 2ce2_X          132 DLARSYGIPYIETSAKTRQGVEDAFYTLVR  161 (166)
T ss_dssp             HHHHHHTCCEEEECTTTCTTHHHHHHHHHH
T ss_pred             HHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            888889999999999999999999998864

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.93  E-value=1.4e-25  Score=133.09  Aligned_cols=108  Identities=36%  Similarity=0.567  Sum_probs=96.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+. .+....+...
T Consensus        54 ~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~-~~~~~~~~~~  131 (170)
T 1g16_A           54 LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDME-TRVVTADQGE  131 (170)
T ss_dssp             EEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCT-TCCSCHHHHH
T ss_pred             EEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCC-cCccCHHHHH
Confidence            6899999999999999999999999999999999999999999999887754 2478999999999994 4556677888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++..+++++++||++|.|++++|+++.+
T Consensus       132 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  161 (170)
T 1g16_A          132 ALAKELGIPFIESSAKNDDNVNEIFFTLAK  161 (170)
T ss_dssp             HHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            888889999999999999999999998764

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.93  E-value=1.7e-25  Score=135.67  Aligned_cols=109  Identities=30%  Similarity=0.434  Sum_probs=98.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+...
T Consensus        76 ~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~  154 (193)
T 2oil_A           76 AQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEAR  154 (193)
T ss_dssp             EEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHH
T ss_pred             EEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHH
Confidence            6899999999999999999999999999999999999999999998887643 357899999999999876667778888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++...+++++++||++|.|++++|+++.+
T Consensus       155 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  184 (193)
T 2oil_A          155 MFAENNGLLFLETSALDSTNVELAFETVLK  184 (193)
T ss_dssp             HHHHHTTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            888888999999999999999999998764

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.93  E-value=5.4e-25  Score=131.48  Aligned_cols=109  Identities=29%  Similarity=0.520  Sum_probs=96.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC---CCCcEEEEeeCCCCCCcccccHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT---DDVPMVLVGNKCDLEEERVVGKE   78 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~   78 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+......   .+.|+++|+||+|+. .+....+
T Consensus        58 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~  136 (177)
T 1wms_A           58 MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTE  136 (177)
T ss_dssp             EEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHH
T ss_pred             EEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHH
Confidence            689999999999999999999999999999999999999999999988776542   568999999999997 3556677


Q ss_pred             HHHHHHH-HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           79 QGASLAR-AFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        79 ~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +..++++ ..+++++++||++|.|++++|+++.+
T Consensus       137 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  170 (177)
T 1wms_A          137 EAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVR  170 (177)
T ss_dssp             HHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHH
Confidence            7888887 45789999999999999999998864

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.93  E-value=1.6e-25  Score=135.91  Aligned_cols=109  Identities=16%  Similarity=0.235  Sum_probs=92.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.+.....+.|+++|+||+|+.+  ..+.++..
T Consensus        69 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~  146 (190)
T 1m2o_B           69 FTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELR  146 (190)
T ss_dssp             EEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHH
Confidence            6899999999999999999999999999999999999999999998887754446799999999999975  34455555


Q ss_pred             HHHHH------------hCCcEEEeecCCCCChhHHhhhhccC
Q psy785           82 SLARA------------FACTFLETSAKAKVNSWLCVECTNDQ  112 (112)
Q Consensus        82 ~~~~~------------~~~~~~~~Sa~~~~~v~~~~~~l~~~  112 (112)
                      +....            .+++++++||++|.|++++|+++.++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          147 SALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             HHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             HHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence            54432            34589999999999999999998753

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.93  E-value=3.4e-25  Score=132.64  Aligned_cols=105  Identities=22%  Similarity=0.393  Sum_probs=88.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCCcEEEEeeCCCCC--CcccccH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD--TDDVPMVLVGNKCDLE--EERVVGK   77 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~~--~~~~~~~   77 (112)
                      +++|||||+++     ..+++++|++++|||++++.+++.+..|+..+.....  ..++|+++|+||+|+.  ..+.+..
T Consensus        56 l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~  130 (178)
T 2iwr_A           56 VLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGD  130 (178)
T ss_dssp             EEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCH
T ss_pred             EEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCH
Confidence            68999999987     4578899999999999999999999998766655443  2578999999999994  3456777


Q ss_pred             HHHHHHHHHh-CCcEEEeecCCCCChhHHhhhhcc
Q psy785           78 EQGASLARAF-ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        78 ~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++..+++... +++++++||++|.|++++|+++.+
T Consensus       131 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~  165 (178)
T 2iwr_A          131 ARARALXADMKRCSYYETXATYGLNVDRVFQEVAQ  165 (178)
T ss_dssp             HHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHH
Confidence            8888888876 689999999999999999998864

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.93  E-value=1.9e-25  Score=136.18  Aligned_cols=108  Identities=29%  Similarity=0.454  Sum_probs=95.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCc--------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEE--------   72 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~--------   72 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+. .|+..+....  .++|+++|+||+|+.+.        
T Consensus        70 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~  147 (201)
T 2q3h_A           70 LQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELD  147 (201)
T ss_dssp             EEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhc
Confidence            679999999999999999999999999999999999999986 7998887754  47999999999999652        


Q ss_pred             ----ccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           73 ----RVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        73 ----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                          +.+..++...++..++. +++++||++|.|++++|+++.+
T Consensus       148 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  191 (201)
T 2q3h_A          148 KCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIV  191 (201)
T ss_dssp             TTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHH
Confidence                45667778888888887 9999999999999999998864

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.93  E-value=5e-25  Score=133.94  Aligned_cols=106  Identities=25%  Similarity=0.317  Sum_probs=95.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||||++++...+..+++++|++++|+|++++.+++.+..|+..+....   +.|+++|+||+| ...+....++..
T Consensus        95 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D-~~~~~~~~~~~~  170 (208)
T 3clv_A           95 FDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKID-KNKFQVDILEVQ  170 (208)
T ss_dssp             EEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTT-CC-CCSCHHHHH
T ss_pred             EEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCC-cccccCCHHHHH
Confidence            6899999999999999999999999999999999999999999999988753   389999999999 444666778888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++..+++++++||++|.|++++|+++.+
T Consensus       171 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  200 (208)
T 3clv_A          171 KYAQDNNLLFIQTSAKTGTNIKNIFYMLAE  200 (208)
T ss_dssp             HHHHHTTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred             HHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Confidence            999999999999999999999999998864

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.93  E-value=5.2e-25  Score=133.14  Aligned_cols=109  Identities=50%  Similarity=0.791  Sum_probs=88.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+ +....++..
T Consensus        71 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~  149 (190)
T 3con_A           71 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAH  149 (190)
T ss_dssp             EEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHH
T ss_pred             EEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHH
Confidence            6899999999999999999999999999999999999999999999988776556799999999999976 455677888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++.++++++++||++|.|++++|+++.+
T Consensus       150 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  179 (190)
T 3con_A          150 ELAKSYGIPFIETSAKTRQGVEDAFYTLVR  179 (190)
T ss_dssp             HHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            889989999999999999999999998864

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.93  E-value=3.5e-26  Score=135.19  Aligned_cols=108  Identities=17%  Similarity=0.252  Sum_probs=87.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+..  ...+..
T Consensus        46 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~  123 (164)
T 1r8s_A           46 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEIT  123 (164)
T ss_dssp             EEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHH
T ss_pred             EEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHH
Confidence            689999999999999999999999999999999999999999998888765444679999999999996532  222222


Q ss_pred             HHH-----HHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLA-----RAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~-----~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ...     ...+++++++||++|.|++++|+++.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (164)
T 1r8s_A          124 DKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN  158 (164)
T ss_dssp             HHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred             HHhCcccccCccEEEEEcccCCCcCHHHHHHHHHH
Confidence            111     112457999999999999999998864

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.93  E-value=1.3e-25  Score=135.46  Aligned_cols=108  Identities=23%  Similarity=0.405  Sum_probs=94.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEeeCCCCCCc--------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEEE--------   72 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~--------   72 (112)
                      +++|||||+++|..++..+++++|++++|+|++++.+++.+ ..|+..+....  .+.|+++|+||+|+.+.        
T Consensus        57 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~  134 (184)
T 1m7b_A           57 LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELS  134 (184)
T ss_dssp             EEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHH
T ss_pred             EEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhh
Confidence            68999999999999999999999999999999999999998 68988887754  57899999999999742        


Q ss_pred             ----ccccHHHHHHHHHHhC-CcEEEeecC-CCCChhHHhhhhcc
Q psy785           73 ----RVVGKEQGASLARAFA-CTFLETSAK-AKVNSWLCVECTND  111 (112)
Q Consensus        73 ----~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~~v~~~~~~l~~  111 (112)
                          +.++.++..++++.++ .+++++||+ ++.|++++|+.+.+
T Consensus       135 ~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~  179 (184)
T 1m7b_A          135 NHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL  179 (184)
T ss_dssp             TTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHH
T ss_pred             hcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHH
Confidence                4566778888998887 699999999 68999999998764

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.93  E-value=5.6e-26  Score=139.62  Aligned_cols=108  Identities=26%  Similarity=0.517  Sum_probs=93.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCccc------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEERV------   74 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~------   74 (112)
                      +++|||||+++|..++..+++++|++++|+|++++.+++.+. .|+..+....  .+.|+++|+||+|+.+.+.      
T Consensus        59 ~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~  136 (212)
T 2j0v_A           59 LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHT  136 (212)
T ss_dssp             EEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCS
T ss_pred             EEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCcccccccc
Confidence            689999999999999999999999999999999999999986 7998887754  4799999999999875443      


Q ss_pred             --ccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           75 --VGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        75 --~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                        +..++..+++..++. +++++||++|.|++++|+++.+
T Consensus       137 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  176 (212)
T 2j0v_A          137 NVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK  176 (212)
T ss_dssp             SCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHH
Confidence              357778888888886 9999999999999999998864

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.93  E-value=4.6e-25  Score=132.12  Aligned_cols=110  Identities=28%  Similarity=0.491  Sum_probs=86.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC---CCCcEEEEeeCCCCCC-cccccH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT---DDVPMVLVGNKCDLEE-ERVVGK   77 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ivv~nK~D~~~-~~~~~~   77 (112)
                      +++|||||++++...+..+++++|++++|+|++++.+++.+..|+..+......   .++|+++|+||+|+.+ .+.+..
T Consensus        60 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~  139 (182)
T 1ky3_A           60 MQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSE  139 (182)
T ss_dssp             EEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCH
T ss_pred             EEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCH
Confidence            689999999999999999999999999999999999999999999988776532   5789999999999953 345567


Q ss_pred             HHHHHHHH-HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           78 EQGASLAR-AFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        78 ~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++..+++. ..+++++++||++|.|++++|+++.+
T Consensus       140 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  174 (182)
T 1ky3_A          140 KSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIAR  174 (182)
T ss_dssp             HHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHH
Confidence            77788887 45679999999999999999998864

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.93  E-value=2.6e-25  Score=133.72  Aligned_cols=108  Identities=22%  Similarity=0.394  Sum_probs=94.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCc--------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEE--------   72 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~--------   72 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+. .|+..+....  .+.|+++|+||+|+.+.        
T Consensus        55 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~  132 (186)
T 1mh1_A           55 LGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLK  132 (186)
T ss_dssp             EEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHH
T ss_pred             EEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhc
Confidence            679999999999999999999999999999999999999987 6888887754  37899999999998653        


Q ss_pred             ----ccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           73 ----RVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        73 ----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                          +.+..++...+++..+. +++++||++|.|++++|+++.+
T Consensus       133 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  176 (186)
T 1mh1_A          133 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR  176 (186)
T ss_dssp             HTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHH
Confidence                34566777888888887 9999999999999999998764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.93  E-value=1.8e-25  Score=137.83  Aligned_cols=108  Identities=25%  Similarity=0.501  Sum_probs=81.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCcc-------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEER-------   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~-------   73 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+. .|+..+....  .++|+++|+||+|+.+..       
T Consensus        84 l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~  161 (214)
T 2j1l_A           84 LHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLR  161 (214)
T ss_dssp             EEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHH
T ss_pred             EEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhc
Confidence            689999999999999999999999999999999999999986 7988887754  568999999999997542       


Q ss_pred             -----cccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           74 -----VVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 -----~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                           .+..++..++++..++ +++++||++|.|++++|+++.+
T Consensus       162 ~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~  205 (214)
T 2j1l_A          162 RNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAE  205 (214)
T ss_dssp             HTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             ccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence                 4566777888888887 9999999999999999998764

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.93  E-value=7.1e-25  Score=133.31  Aligned_cols=110  Identities=35%  Similarity=0.519  Sum_probs=92.7

Q ss_pred             ceEEeCCCccc-chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            2 LEILDTAGTEQ-FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         2 ~~i~Dt~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      +.+|||+|++. +..+.+.+++.+|++++|||++++.+++.+..|...+.......+.|+++|+||+|+.+.+.+..++.
T Consensus        58 l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~  137 (192)
T 2cjw_A           58 IILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEG  137 (192)
T ss_dssp             EEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHH
T ss_pred             EEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHH
Confidence            57899999886 45577788899999999999999999999999988887654445799999999999976666777777


Q ss_pred             HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           81 ASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..++..+++++++|||++|.||+++|+++.+
T Consensus       138 ~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~  168 (192)
T 2cjw_A          138 RAXAVVFDXKFIETSAAVQHNVKELFEGIVR  168 (192)
T ss_dssp             HHHHHHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHhCCceEEeccccCCCHHHHHHHHHH
Confidence            7788888899999999999999999998764

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.93  E-value=7e-25  Score=133.94  Aligned_cols=108  Identities=28%  Similarity=0.483  Sum_probs=94.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEeeCCCCCCc--------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEEE--------   72 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~--------   72 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+ ..|+..+....  .+.|+++|+||+|+.+.        
T Consensus        75 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~  152 (201)
T 2gco_A           75 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRQDEHTRRELA  152 (201)
T ss_dssp             EEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGTTCHHHHHHHH
T ss_pred             EEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEecHHhhcCccchhhhc
Confidence            68999999999999999999999999999999999999998 67888877653  47899999999999754        


Q ss_pred             ----ccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           73 ----RVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        73 ----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                          +.+..++..++++..+. +++++||++|.|++++|+++.+
T Consensus       153 ~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~  196 (201)
T 2gco_A          153 KMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR  196 (201)
T ss_dssp             TTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence                34566777888888888 8999999999999999998864

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.93  E-value=2.5e-25  Score=136.34  Aligned_cols=108  Identities=23%  Similarity=0.426  Sum_probs=95.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCccc------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEERV------   74 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~------   74 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+. .|+..+....  .++|+++|+||+|+.+...      
T Consensus        80 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~  157 (204)
T 4gzl_A           80 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLK  157 (204)
T ss_dssp             EEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHH
T ss_pred             EEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhh
Confidence            569999999999999999999999999999999999999986 7888887754  5799999999999875432      


Q ss_pred             ------ccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           75 ------VGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        75 ------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                            +..++...+++..+. +++++||++|.|++++|+++.+
T Consensus       158 ~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~  201 (204)
T 4gzl_A          158 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR  201 (204)
T ss_dssp             HTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence                  566777888888886 6999999999999999999875

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.93  E-value=2.5e-25  Score=137.19  Aligned_cols=109  Identities=24%  Similarity=0.380  Sum_probs=95.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+...
T Consensus        63 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~  141 (218)
T 4djt_A           63 FNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG-NEAPIVVCANKIDIKNRQKISKKLVM  141 (218)
T ss_dssp             EEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-SSSCEEEEEECTTCC----CCHHHHH
T ss_pred             EEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCccccccCHHHHH
Confidence            68999999999999999999999999999999999999999999999877643 45899999999999876677777788


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++...+++++++||++|.|++++|+++.+
T Consensus       142 ~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  171 (218)
T 4djt_A          142 EVLKGKNYEYFEISAKTAHNFGLPFLHLAR  171 (218)
T ss_dssp             HHTTTCCCEEEEEBTTTTBTTTHHHHHHHH
T ss_pred             HHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Confidence            888888999999999999999999998864

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.93  E-value=2.9e-25  Score=136.29  Aligned_cols=108  Identities=23%  Similarity=0.405  Sum_probs=94.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEeeCCCCCCc--------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEEE--------   72 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~--------   72 (112)
                      +++|||||+++|..++..+++++|++++|||++++.+++.+ ..|+..+.+..  .+.|+++|+||+|+.+.        
T Consensus        78 l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~  155 (205)
T 1gwn_A           78 LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELS  155 (205)
T ss_dssp             EEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHH
T ss_pred             EEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhc
Confidence            68999999999999999999999999999999999999998 78988887754  56899999999999642        


Q ss_pred             ----ccccHHHHHHHHHHhC-CcEEEeecC-CCCChhHHhhhhcc
Q psy785           73 ----RVVGKEQGASLARAFA-CTFLETSAK-AKVNSWLCVECTND  111 (112)
Q Consensus        73 ----~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~~v~~~~~~l~~  111 (112)
                          +.+..++..++++.++ +++++|||+ ++.|++++|+.+.+
T Consensus       156 ~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~  200 (205)
T 1gwn_A          156 NHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL  200 (205)
T ss_dssp             TTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHH
T ss_pred             ccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHH
Confidence                4566777888998887 699999999 68999999998764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=8.1e-25  Score=132.94  Aligned_cols=109  Identities=37%  Similarity=0.665  Sum_probs=95.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCCCCCcccccHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+...... .+.|+++|+||+|+.+ +....+..
T Consensus        58 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~  136 (199)
T 2gf0_A           58 LQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREA  136 (199)
T ss_dssp             EEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHH
T ss_pred             EEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHH
Confidence            689999999999999999999999999999999999999988888777765432 4689999999999975 45567777


Q ss_pred             HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           81 ASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..++..++++++++||++|.|++++|+++.+
T Consensus       137 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  167 (199)
T 2gf0_A          137 QAVAQEWKCAFMETSAKMNYNVKELFQELLT  167 (199)
T ss_dssp             HHHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Confidence            8888889999999999999999999999864

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.93  E-value=9.1e-25  Score=134.03  Aligned_cols=108  Identities=34%  Similarity=0.566  Sum_probs=96.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+. .+....+...
T Consensus        71 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~-~~~~~~~~~~  148 (213)
T 3cph_A           71 LQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDME-TRVVTADQGE  148 (213)
T ss_dssp             EEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTT-TCSEEEEEEECTTCS-SCCSCHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCc-ccccCHHHHH
Confidence            68999999999999999999999999999999999999999999988877542 468999999999994 4556677788


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++..++++++++||++|.|++++|+++.+
T Consensus       149 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  178 (213)
T 3cph_A          149 ALAKELGIPFIESSAKNDDNVNEIFFTLAK  178 (213)
T ss_dssp             HHHHHHTCCEEECBTTTTBSSHHHHHHHHH
T ss_pred             HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            888889999999999999999999998763

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.92  E-value=1.8e-25  Score=135.88  Aligned_cols=108  Identities=14%  Similarity=0.250  Sum_probs=88.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-------CCCcEEEEeeCCCCCCccc
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT-------DDVPMVLVGNKCDLEEERV   74 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-------~~~p~ivv~nK~D~~~~~~   74 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+......       .++|+++|+||+|+.+...
T Consensus        65 ~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~  144 (199)
T 4bas_A           65 FTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT  144 (199)
T ss_dssp             EEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC
T ss_pred             EEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC
Confidence            689999999999999999999999999999999999999999998888765321       2789999999999975432


Q ss_pred             ccHHHHHH------HHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           75 VGKEQGAS------LARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        75 ~~~~~~~~------~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                        ..+..+      +++..+++++++||++|.|++++|+++.+
T Consensus       145 --~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  185 (199)
T 4bas_A          145 --AAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQE  185 (199)
T ss_dssp             --HHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred             --HHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHH
Confidence              121111      11335679999999999999999999864

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=1.4e-24  Score=133.15  Aligned_cols=108  Identities=25%  Similarity=0.442  Sum_probs=94.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEeeCCCCCCc--------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEEE--------   72 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~--------   72 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+ ..|+..+....  .++|+++|+||+|+.+.        
T Consensus        75 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~  152 (207)
T 2fv8_A           75 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC--PNVPIILVANKKDLRSDEHVRTELA  152 (207)
T ss_dssp             EEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGGGCHHHHHHHH
T ss_pred             EEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhhhccccchhhhh
Confidence            68999999999999999999999999999999999999988 67888887643  57899999999999654        


Q ss_pred             ----ccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           73 ----RVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        73 ----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                          +.+..++...++...+. +++++||++|.|++++|+++.+
T Consensus       153 ~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~  196 (207)
T 2fv8_A          153 RMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATR  196 (207)
T ss_dssp             HTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             hcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHH
Confidence                34566677788888887 9999999999999999998864

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.92  E-value=9e-25  Score=131.61  Aligned_cols=108  Identities=18%  Similarity=0.176  Sum_probs=88.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++...+..+++++|++++|+|++++.+++.+..|+..+.+.....+.|+++|+||+|+.+...  .++..
T Consensus        62 l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~  139 (181)
T 1fzq_A           62 LNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIA  139 (181)
T ss_dssp             EEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHH
Confidence            6899999999999999999999999999999999999999989988876654446799999999999975432  22222


Q ss_pred             HHH-----HHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLA-----RAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~-----~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +..     ...++++++|||++|.|++++|+++.+
T Consensus       140 ~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  174 (181)
T 1fzq_A          140 EGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCK  174 (181)
T ss_dssp             HHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHhCchhccCCceEEEEccCCCCCCHHHHHHHHHH
Confidence            211     122468999999999999999999864

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.92  E-value=1.9e-25  Score=132.72  Aligned_cols=108  Identities=17%  Similarity=0.175  Sum_probs=88.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++....|+..+.......+.|+++|+||+|+.+...  ..+..
T Consensus        53 ~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~  130 (171)
T 1upt_A           53 FQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMA  130 (171)
T ss_dssp             EEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHH
T ss_pred             EEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHH
Confidence            6899999999999999999999999999999999999999988988887654446799999999999975432  22222


Q ss_pred             H-H----HHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 S-L----ARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~-~----~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      . +    +...+++++++||++|.|++++|+++.+
T Consensus       131 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  165 (171)
T 1upt_A          131 NSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVE  165 (171)
T ss_dssp             HHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHhCchhccCCceEEEECcCCCCcCHHHHHHHHHH
Confidence            1 1    2223568999999999999999998864

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.92  E-value=1e-24  Score=133.29  Aligned_cols=109  Identities=29%  Similarity=0.502  Sum_probs=94.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC---CCCcEEEEeeCCCCCCcccccHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT---DDVPMVLVGNKCDLEEERVVGKE   78 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~   78 (112)
                      +.+|||||++++..++..+++++|++++|+|++++.+++.+..|+..+......   .+.|+++|+||+|+. .+....+
T Consensus        59 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~  137 (207)
T 1vg8_A           59 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATK  137 (207)
T ss_dssp             EEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHH
T ss_pred             EEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHH
Confidence            689999999999999999999999999999999999999999999888776532   468999999999997 3455667


Q ss_pred             HHHHHHH-HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           79 QGASLAR-AFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        79 ~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ...+++. ..+++++++||++|.|++++|+++.+
T Consensus       138 ~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  171 (207)
T 1vg8_A          138 RAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR  171 (207)
T ss_dssp             HHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHH
Confidence            7777777 56789999999999999999998864

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.92  E-value=1.3e-25  Score=136.41  Aligned_cols=108  Identities=16%  Similarity=0.256  Sum_probs=83.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+..  ...+..
T Consensus        75 ~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~  152 (192)
T 2b6h_A           75 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELT  152 (192)
T ss_dssp             EEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHH
T ss_pred             EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHH
Confidence            689999999999999999999999999999999999999999999888765444679999999999996532  222222


Q ss_pred             HHH-----HHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLA-----RAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~-----~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +..     ...+++++++||++|.|++++|+++.+
T Consensus       153 ~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~  187 (192)
T 2b6h_A          153 DKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSH  187 (192)
T ss_dssp             HHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred             HHhCcccccCCceEEEECcCCCcCCHHHHHHHHHH
Confidence            111     122457999999999999999998864

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.92  E-value=1.9e-26  Score=140.67  Aligned_cols=109  Identities=36%  Similarity=0.574  Sum_probs=88.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||||++++..++..+++++|++++|+|++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+..+...
T Consensus        84 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~Dl~~~~~v~~~~~~  162 (199)
T 3l0i_B           84 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDLTTKKVVDYTTAK  162 (199)
T ss_dssp             EEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCCSCC-C
T ss_pred             EEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc-CCCCEEEEEECccCCccccCCHHHHH
Confidence            68999999999999999999999999999999999999999999998876432 47899999999999876666666677


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++..++++++++||++|.|++++|+++.+
T Consensus       163 ~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~  192 (199)
T 3l0i_B          163 EFADSLGIPFLETSAKNATNVEQSFMTMAA  192 (199)
T ss_dssp             HHHHTTTCCBCCCCC---HHHHHHHHHHTT
T ss_pred             HHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            888888999999999999999999999875

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.92  E-value=1.2e-24  Score=130.91  Aligned_cols=109  Identities=15%  Similarity=0.153  Sum_probs=89.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.+.....++|+++|+||+|+.+.  ....+..
T Consensus        67 ~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~  144 (181)
T 2h17_A           67 FLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEIS  144 (181)
T ss_dssp             EEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHH
T ss_pred             EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHH
Confidence            68999999999999999999999999999999999999999999888876543467999999999999652  2233333


Q ss_pred             HHH-----HHhCCcEEEeecCCCCChhHHhhhhccC
Q psy785           82 SLA-----RAFACTFLETSAKAKVNSWLCVECTNDQ  112 (112)
Q Consensus        82 ~~~-----~~~~~~~~~~Sa~~~~~v~~~~~~l~~~  112 (112)
                      +..     ...+++++++||++|.|++++|+++.++
T Consensus       145 ~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          145 QFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             HHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred             HHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence            322     1235589999999999999999998763

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.92  E-value=3.3e-24  Score=129.76  Aligned_cols=108  Identities=19%  Similarity=0.280  Sum_probs=90.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC--CCCcEEEEeeCCCCCCcccccHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT--DDVPMVLVGNKCDLEEERVVGKEQ   79 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~   79 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+......  .++|+++|+||+|+.+.  ...++
T Consensus        69 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~  146 (190)
T 2h57_A           69 FTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVK  146 (190)
T ss_dssp             EEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHH
Confidence            689999999999999999999999999999999999999999999888776443  57999999999999743  23444


Q ss_pred             HHHHHH-----HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           80 GASLAR-----AFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        80 ~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..+...     ..+++++++||++|.|++++|+++.+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  183 (190)
T 2h57_A          147 VSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQD  183 (190)
T ss_dssp             HHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred             HHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHH
Confidence            444442     13568999999999999999998864

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=1.5e-24  Score=130.98  Aligned_cols=108  Identities=15%  Similarity=0.150  Sum_probs=86.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++++++.+..|+..+.+.....+.|+++|+||+|+.+.  ...++..
T Consensus        62 ~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~  139 (187)
T 1zj6_A           62 FLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEIS  139 (187)
T ss_dssp             EEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHH
T ss_pred             EEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHH
Confidence            68999999999999999999999999999999999999999999998887643467999999999999742  2233333


Q ss_pred             HHHH-----HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLAR-----AFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +...     ..+++++++||++|.|++++|+++.+
T Consensus       140 ~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  174 (187)
T 1zj6_A          140 QFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS  174 (187)
T ss_dssp             HHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred             HHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHH
Confidence            3322     23568999999999999999999864

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.92  E-value=1.1e-24  Score=132.59  Aligned_cols=108  Identities=16%  Similarity=0.184  Sum_probs=87.7

Q ss_pred             CceEEeCCCcccchhhH---HhhcccCCEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc---
Q psy785            1 MLEILDTAGTEQFTAMR---DLYMKNGQGFILVYSITAQ--STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE---   72 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~---~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~---   72 (112)
                      .+++|||||+++|....   ..+++++|++++|||+++.  ++++.+..|+..+....  .+.|+++|+||+|+.+.   
T Consensus        70 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~piilv~nK~Dl~~~~~~  147 (196)
T 3llu_A           70 NFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN--PDMNFEVFIHKVDGLSDDHK  147 (196)
T ss_dssp             CEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC--TTCEEEEEEECGGGSCHHHH
T ss_pred             EEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC--CCCcEEEEEeccccCchhhh
Confidence            47899999999987766   8999999999999999997  67777777877765432  57999999999998642   


Q ss_pred             ----ccccHHHHHHHHH----HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           73 ----RVVGKEQGASLAR----AFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        73 ----~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                          +.+......++++    ..++++++|||++ .|++++|+.+++
T Consensus       148 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~  193 (196)
T 3llu_A          148 IETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQ  193 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHH
T ss_pred             hHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHH
Confidence                3344444566676    5678999999999 999999998864

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.92  E-value=9.2e-25  Score=135.05  Aligned_cols=106  Identities=26%  Similarity=0.475  Sum_probs=93.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.+..  .++|+++|+||+|+.+....  .+..
T Consensus        66 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~--~~~~  141 (221)
T 3gj0_A           66 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVK--AKSI  141 (221)
T ss_dssp             EEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSC--GGGC
T ss_pred             EEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCcccccccc--HHHH
Confidence            6899999999999999999999999999999999999999999999998864  47899999999999754332  2455


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+++..+++++++||++|.|++++|+++.+
T Consensus       142 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  171 (221)
T 3gj0_A          142 VFHRKKNLQYYDISAKSNYNFEKPFLWLAR  171 (221)
T ss_dssp             CHHHHHTCEEEECBGGGTBTTTHHHHHHHH
T ss_pred             HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            677788999999999999999999998764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.91  E-value=2.6e-24  Score=129.68  Aligned_cols=108  Identities=16%  Similarity=0.175  Sum_probs=89.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++...+..+++++|++++|+|++++.+++.+..|+..+.+.....+.|+++|+||+|+.+...  .++..
T Consensus        64 ~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~  141 (186)
T 1ksh_A           64 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQ  141 (186)
T ss_dssp             EEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHH
T ss_pred             EEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHH
Confidence            6899999999999999999999999999999999999999999988887754446799999999999975432  23322


Q ss_pred             HHHH-----HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLAR-----AFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +...     ..+++++++||++|.|++++|+++.+
T Consensus       142 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  176 (186)
T 1ksh_A          142 EALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLD  176 (186)
T ss_dssp             HHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHH
Confidence            2221     23568999999999999999998864

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.91  E-value=5.4e-25  Score=133.14  Aligned_cols=108  Identities=16%  Similarity=0.238  Sum_probs=87.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+..  ...+..
T Consensus        69 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~  146 (188)
T 1zd9_A           69 IKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELI  146 (188)
T ss_dssp             EEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHH
T ss_pred             EEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHH
Confidence            689999999999999999999999999999999999999999998888765434679999999999997532  222222


Q ss_pred             HHHH-----HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLAR-----AFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +...     ..+++++++||++|.|++++|+++.+
T Consensus       147 ~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~  181 (188)
T 1zd9_A          147 EKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ  181 (188)
T ss_dssp             HHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHH
Confidence            2111     12458999999999999999999864

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.91  E-value=3.7e-25  Score=143.51  Aligned_cols=108  Identities=15%  Similarity=0.184  Sum_probs=83.3

Q ss_pred             CceEEeCCCcccchh---hHHhhcccCCEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc---
Q psy785            1 MLEILDTAGTEQFTA---MRDLYMKNGQGFILVYSITAQ--STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE---   72 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~---~~~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~---   72 (112)
                      ++++||||||++|..   .++.++++++++++|||++++  ++.+.+..|+..+.+.  .+++|++++|||+|+.++   
T Consensus        47 ~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~--~~~ipillvgNK~DL~~~~~R  124 (331)
T 3r7w_B           47 DLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKV--NPSINIEVLIHKVDGLSEDFK  124 (331)
T ss_dssp             CEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCSSCSHHH
T ss_pred             EEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhc--CCCCcEEEEEECcccCchhhh
Confidence            479999999999964   468899999999999999987  3444444455555443  257999999999999753   


Q ss_pred             ----ccccHHHHHHHHHH----hCCcEEEeecCCCCChhHHhhhhcc
Q psy785           73 ----RVVGKEQGASLARA----FACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        73 ----~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                          +.+..++.+++++.    .++++++|||++ .+|+++|..+++
T Consensus       125 ~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~  170 (331)
T 3r7w_B          125 VDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQ  170 (331)
T ss_dssp             HHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHT
T ss_pred             hhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHH
Confidence                23445555666664    578999999998 699999998875

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.91  E-value=2.2e-25  Score=134.77  Aligned_cols=108  Identities=15%  Similarity=0.151  Sum_probs=87.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++....|+..+.......+.|+++|+||+|+.+...  ..+..
T Consensus        68 ~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~  145 (189)
T 2x77_A           68 FEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIA  145 (189)
T ss_dssp             EEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHH
T ss_pred             EEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHH
Confidence            6899999999999999999999999999999999999999988988887754446799999999999975322  22222


Q ss_pred             HH-----HHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SL-----ARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~-----~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +.     +...+++++++||++|.|++++|+++.+
T Consensus       146 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  180 (189)
T 2x77_A          146 EQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVE  180 (189)
T ss_dssp             HHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHhChhhccCCceEEEEccCCCccCHHHHHHHHHH
Confidence            11     1223558999999999999999998864

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.90  E-value=1.3e-24  Score=142.73  Aligned_cols=110  Identities=18%  Similarity=0.163  Sum_probs=92.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA----------QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~   71 (112)
                      +++|||+||++++.+|..++++++++|+|+|+++          ..+++....|+..+..+....+.|+++++||+|+.+
T Consensus       195 l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~  274 (353)
T 1cip_A          195 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFE  274 (353)
T ss_dssp             EEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH
T ss_pred             EEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchh
Confidence            7899999999999999999999999999999998          457888888988887754446799999999999853


Q ss_pred             cc---------------cccHHHHHHHHH-----------HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           72 ER---------------VVGKEQGASLAR-----------AFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        72 ~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+               ..+.+++.+++.           ..++.+++|||+++.||.++|.++.+
T Consensus       275 ~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~  340 (353)
T 1cip_A          275 EKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTD  340 (353)
T ss_dssp             HHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             hhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHH
Confidence            22               245667777776           24568999999999999999998763

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.90  E-value=1.7e-23  Score=135.80  Aligned_cols=108  Identities=23%  Similarity=0.416  Sum_probs=95.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCc--------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEE--------   72 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~--------   72 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+. .|+..+....  .++|+++|+||+|+.+.        
T Consensus       205 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~  282 (332)
T 2wkq_A          205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLK  282 (332)
T ss_dssp             EEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHH
T ss_pred             EEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhcc
Confidence            569999999999999999999999999999999999999886 6888887754  37899999999998643        


Q ss_pred             ----ccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           73 ----RVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        73 ----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                          +.+..++..++++..++ +++++||++|.|++++|+.+.+
T Consensus       283 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  326 (332)
T 2wkq_A          283 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR  326 (332)
T ss_dssp             HTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHH
Confidence                45667788888988887 9999999999999999998764

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.83  E-value=1.5e-25  Score=137.04  Aligned_cols=108  Identities=23%  Similarity=0.433  Sum_probs=91.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCcc-------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEER-------   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~-------   73 (112)
                      +++|||||++++..++..+++++|++++|+|++++.+++.+. .|+..+....  .++|+++|+||+|+.+..       
T Consensus        80 l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~  157 (204)
T 3th5_A           80 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLK  157 (204)
Confidence            579999999999999999999999999999999999999886 7887776643  378999999999996532       


Q ss_pred             -----cccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           74 -----VVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 -----~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                           .+..++..++++..++ +++++||++|.|++++|+++.+
T Consensus       158 ~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~  201 (204)
T 3th5_A          158 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR  201 (204)
Confidence                 3444556667777787 9999999999999999999875

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.90  E-value=1.2e-23  Score=126.27  Aligned_cols=108  Identities=15%  Similarity=0.159  Sum_probs=84.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++...+..+++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+..  ...+..
T Consensus        64 ~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~  141 (183)
T 1moz_A           64 LNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL--SASEVS  141 (183)
T ss_dssp             EEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC--CHHHHH
T ss_pred             EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC--CHHHHH
Confidence            689999999999999999999999999999999999999999999888775444679999999999996532  233333


Q ss_pred             HHHH-----HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLAR-----AFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +...     ..+++++++||++|.|++++|+++.+
T Consensus       142 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  176 (183)
T 1moz_A          142 KELNLVELKDRSWSIVASSAIKGEGITEGLDWLID  176 (183)
T ss_dssp             HHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHH
T ss_pred             HHhCcccccCCceEEEEccCCCCcCHHHHHHHHHH
Confidence            3221     12457999999999999999998864

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.89  E-value=6.6e-24  Score=139.41  Aligned_cols=110  Identities=15%  Similarity=0.171  Sum_probs=88.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSIT----------AQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~   71 (112)
                      +++|||+||+++..+|..++++++++++|+|++          +..+++....|+..+.......+.|+++++||+|+.+
T Consensus       185 l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~  264 (354)
T 2xtz_A          185 YRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFE  264 (354)
T ss_dssp             EEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHH
T ss_pred             eEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhh
Confidence            789999999999999999999999999999998          7789999989998887754446799999999999853


Q ss_pred             ccc--c-------------------cHHHHHHHHHH----------------hCCcEEEeecCCCCChhHHhhhhcc
Q psy785           72 ERV--V-------------------GKEQGASLARA----------------FACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        72 ~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+.  .                   +.+++.+++..                ..+.+++|||+++.||.++|+++.+
T Consensus       265 ~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~  341 (354)
T 2xtz_A          265 KKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDE  341 (354)
T ss_dssp             HHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             hhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHH
Confidence            221  1                   13445555332                1235689999999999999998753

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.89  E-value=9.1e-24  Score=127.44  Aligned_cols=107  Identities=17%  Similarity=0.234  Sum_probs=87.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc---H
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQ-STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG---K   77 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~---~   77 (112)
                      +++|||+|+++|..+++.++++++++++|+|++++ .+++.+..|+..+....  .+.|+++|+||+|+.+.+...   .
T Consensus        58 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~  135 (184)
T 2zej_A           58 LNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMS  135 (184)
T ss_dssp             EEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHH
T ss_pred             EEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHH
Confidence            68999999999999999999999999999999987 58999999999887653  468999999999997544332   2


Q ss_pred             HHHHHHHHHhCCc----EEEeecCCCC-ChhHHhhhhc
Q psy785           78 EQGASLARAFACT----FLETSAKAKV-NSWLCVECTN  110 (112)
Q Consensus        78 ~~~~~~~~~~~~~----~~~~Sa~~~~-~v~~~~~~l~  110 (112)
                      .....+++..+++    ++++||++|. ++.++++.+.
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~  173 (184)
T 2zej_A          136 KITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTII  173 (184)
T ss_dssp             HHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHH
Confidence            2334455556776    9999999997 9999998875

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.89  E-value=1.7e-23  Score=132.25  Aligned_cols=103  Identities=22%  Similarity=0.302  Sum_probs=84.4

Q ss_pred             CCCcccchhhHHhhcc---------------------cCCEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCCcEEEE
Q psy785            7 TAGTEQFTAMRDLYMK---------------------NGQGFILVYSITAQ--STFNDLSDLREQILRVKDTDDVPMVLV   63 (112)
Q Consensus         7 t~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~p~ivv   63 (112)
                      ++|+++|..++..+++                     ++|++++|||++++  .+++.+..|+..+.+.....++|+++|
T Consensus       125 ~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV  204 (255)
T 3c5h_A          125 RAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVV  204 (255)
T ss_dssp             HHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEE
Confidence            7788888888888887                     89999999999998  899999999998876533356899999


Q ss_pred             eeCCCCCCcccccHHHHHHHHHH-hCCcEEEeecCCCCChhHHhhhhcc
Q psy785           64 GNKCDLEEERVVGKEQGASLARA-FACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        64 ~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +||+|+.+.+.+  ++..+++.. .+++++++||++|.|++++|+++.+
T Consensus       205 ~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~  251 (255)
T 3c5h_A          205 LTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ  251 (255)
T ss_dssp             EECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            999999754443  456667765 4789999999999999999999864

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.88  E-value=2.5e-23  Score=138.33  Aligned_cols=109  Identities=17%  Similarity=0.146  Sum_probs=88.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA----------QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~   71 (112)
                      +++|||+||+++..+|..++++++++++|+|+++          ..+++....|+..+.......++|+++|+||+|+.+
T Consensus       219 l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~  298 (402)
T 1azs_C          219 FHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA  298 (402)
T ss_dssp             EEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHH
T ss_pred             ceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhh
Confidence            7899999999999999999999999999999999          889999999999988764446799999999999853


Q ss_pred             ccc---c---------------------------cHHHHHHHH-----HH--------hCCcEEEeecCCCCChhHHhhh
Q psy785           72 ERV---V---------------------------GKEQGASLA-----RA--------FACTFLETSAKAKVNSWLCVEC  108 (112)
Q Consensus        72 ~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~~~~~v~~~~~~  108 (112)
                      .+.   .                           ..+.+..++     ..        .++.+++|||+++.||.++|..
T Consensus       299 ~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~  378 (402)
T 1azs_C          299 EKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFND  378 (402)
T ss_dssp             HHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHH
T ss_pred             hhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHH
Confidence            221   1                           123444443     22        1456789999999999999988


Q ss_pred             hc
Q psy785          109 TN  110 (112)
Q Consensus       109 l~  110 (112)
                      +.
T Consensus       379 v~  380 (402)
T 1azs_C          379 CR  380 (402)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.88  E-value=1.6e-23  Score=136.68  Aligned_cols=108  Identities=16%  Similarity=0.226  Sum_probs=83.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      ++||||||++++..++..+++++|++++|||++++.+++.+..|+..+.......++|+++|+||+|+.+...  ..+..
T Consensus       211 l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~  288 (329)
T 3o47_A          211 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEIT  288 (329)
T ss_dssp             EEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHH
T ss_pred             EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHH
Confidence            6899999999999999999999999999999999999999988888877655446899999999999975332  22222


Q ss_pred             HHHH-----HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLAR-----AFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ....     ..+++++++||++|.|++++|+++.+
T Consensus       289 ~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~  323 (329)
T 3o47_A          289 DKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN  323 (329)
T ss_dssp             HHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred             HHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHH
Confidence            2111     12457999999999999999999864

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.88  E-value=9.2e-23  Score=131.93  Aligned_cols=109  Identities=17%  Similarity=0.225  Sum_probs=88.8

Q ss_pred             ceEEeCCCcccc-----hhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCCcEEEEeeCCCCCC--cc
Q psy785            2 LEILDTAGTEQF-----TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEE--ER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~~~--~~   73 (112)
                      +++|||||++++     ...+..+++++|++++|+|++++.+++.+..|...+..... ..++|+++|+||+|+.+  .+
T Consensus        54 l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r  133 (307)
T 3r7w_A           54 LNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKR  133 (307)
T ss_dssp             EEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHH
T ss_pred             EEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhh
Confidence            689999999998     67888899999999999999999999988777554443221 25799999999999976  33


Q ss_pred             c----ccHHHHHHHHHHhC---CcEEEeecCCCCChhHHhhhhcc
Q psy785           74 V----VGKEQGASLARAFA---CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 ~----~~~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .    ...+++.++++.+|   ++++++||++ .++.++|..+++
T Consensus       134 ~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~  177 (307)
T 3r7w_A          134 EELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVC  177 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHH
Confidence            3    44567778888887   7999999999 889999887653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.88  E-value=1.7e-22  Score=130.39  Aligned_cols=103  Identities=17%  Similarity=0.138  Sum_probs=87.8

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQ   79 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~   79 (112)
                      ++++|||  +++|+.+++.+++++|++++|+|++++. +++.+..|+..+..    .++|+++|+||+|+.+.+.+  ++
T Consensus        64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~----~~~piilv~NK~DL~~~~~v--~~  135 (301)
T 1u0l_A           64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDL--RK  135 (301)
T ss_dssp             SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHH--HH
T ss_pred             eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEeHHHcCCchhH--HH
Confidence            3689999  8999999999999999999999999987 78888999987765    46899999999999754432  34


Q ss_pred             HHHHHHHhC--CcEEEeecCCCCChhHHhhhhcc
Q psy785           80 GASLARAFA--CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        80 ~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..+++..++  +++++|||++|.|++++|..+..
T Consensus       136 ~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          136 VRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            566777777  89999999999999999987653

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.88  E-value=2.8e-23  Score=136.82  Aligned_cols=110  Identities=16%  Similarity=0.127  Sum_probs=84.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA----------QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~   71 (112)
                      +++||||||+++...|..++++++++++|+|+++          ..+++....|+..+.......++|+++++||+|+.+
T Consensus       203 l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~  282 (362)
T 1zcb_A          203 FKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLE  282 (362)
T ss_dssp             EEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH
T ss_pred             EEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhh
Confidence            7899999999999999999999999999999999          678998888998887754446799999999999853


Q ss_pred             cc----------------cccHHHHHHHHH-----------HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           72 ER----------------VVGKEQGASLAR-----------AFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        72 ~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+                ..+.+++..++.           ..++.+++|||+++.||.++|.++.+
T Consensus       283 ~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~  349 (362)
T 1zcb_A          283 EKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD  349 (362)
T ss_dssp             HHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             hhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHH
Confidence            22                245666666652           34578899999999999999998753

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.87  E-value=2.4e-23  Score=135.35  Aligned_cols=111  Identities=14%  Similarity=0.140  Sum_probs=90.3

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSIT----------AQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      ++++|||+||++++.+|..++++++++++|+|++          +..+++....|+..+.......++|+++++||+|+.
T Consensus       168 ~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~  247 (327)
T 3ohm_A          168 IFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL  247 (327)
T ss_dssp             EEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHH
T ss_pred             eeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhh
Confidence            3789999999999999999999999999999664          566788777888888776544679999999999986


Q ss_pred             Ccc----------------cccHHHHHHHHH----------HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           71 EER----------------VVGKEQGASLAR----------AFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        71 ~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +.+                ..+.+++.+++.          ..++.+++|||+++.||.++|..+.+
T Consensus       248 ~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~  314 (327)
T 3ohm_A          248 EEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD  314 (327)
T ss_dssp             HHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             hhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHH
Confidence            433                356667776643          23567899999999999999988753

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.87  E-value=2e-21  Score=119.38  Aligned_cols=110  Identities=18%  Similarity=0.218  Sum_probs=77.0

Q ss_pred             ceEEeCCCcccchh-hHHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhh-c-CCCCCcEEEEeeCCCCCCcccccH
Q psy785            2 LEILDTAGTEQFTA-MRDLYMKNGQGFILVYSITAQS-TFNDLSDLREQILRV-K-DTDDVPMVLVGNKCDLEEERVVGK   77 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~-~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~-~-~~~~~p~ivv~nK~D~~~~~~~~~   77 (112)
                      +++|||||++++.. ++..+++++|++++|+|+++.. ++.....|+..+... . ...++|+++|+||+|+.+......
T Consensus        56 ~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~  135 (214)
T 2fh5_B           56 LTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKL  135 (214)
T ss_dssp             EEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHH
T ss_pred             EEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHH
Confidence            78999999999987 8889999999999999999854 455555544443322 1 224689999999999975433111


Q ss_pred             --HHHHHHHH---------------------------------Hh--CCcEEEeecCCC------CChhHHhhhhcc
Q psy785           78 --EQGASLAR---------------------------------AF--ACTFLETSAKAK------VNSWLCVECTND  111 (112)
Q Consensus        78 --~~~~~~~~---------------------------------~~--~~~~~~~Sa~~~------~~v~~~~~~l~~  111 (112)
                        +...+...                                 .+  ++++++|||++|      .||+++|+++.+
T Consensus       136 ~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~  212 (214)
T 2fh5_B          136 IQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAK  212 (214)
T ss_dssp             HHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHH
Confidence              11111111                                 11  557999999999      999999999864

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.87  E-value=4.2e-22  Score=118.26  Aligned_cols=102  Identities=17%  Similarity=0.135  Sum_probs=80.0

Q ss_pred             ceEEeCCCcccch------hhHHhhcc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQFT------AMRDLYMK--NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~   73 (112)
                      +++|||||++++.      .+.+.+++  +++++++++|.++.++   ...|+..+.+    .+.|+++|+||+|+...+
T Consensus        52 l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~  124 (165)
T 2wji_A           52 FKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALER---NLYLTLQLME----MGANLLLALNKMDLAKSL  124 (165)
T ss_dssp             EEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHH---HHHHHHHHHH----TTCCEEEEEECHHHHHHT
T ss_pred             EEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhH---hHHHHHHHHh----cCCCEEEEEEchHhcccc
Confidence            6899999999874      44566665  8999999999988653   3457766655    368999999999986443


Q ss_pred             cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+.. ...++++.++++++++||++|.|++++|+++.+
T Consensus       125 ~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~  161 (165)
T 2wji_A          125 GIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISI  161 (165)
T ss_dssp             TCCC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHH
T ss_pred             Chhh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            3332 356777888999999999999999999998764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.86  E-value=1.1e-20  Score=115.11  Aligned_cols=109  Identities=27%  Similarity=0.418  Sum_probs=95.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||+|++++..++..++++++++++|+|+++..+++.+..|+..+.... ..+.|+++++||+|+.+.+......++
T Consensus        56 ~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i~~v~nK~Dl~~~~~~~~~~a~  134 (199)
T 2f9l_A           56 AQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEAR  134 (199)
T ss_dssp             EEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHH
T ss_pred             EEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccCcCHHHHH
Confidence            5789999999998888889999999999999999999998888988776542 246899999999999766666677788


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++...++.++++||+++.|++++|+.+.+
T Consensus       135 ~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~  164 (199)
T 2f9l_A          135 AFAEKNNLSFIETSALDSTNVEEAFKNILT  164 (199)
T ss_dssp             HHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            888888999999999999999999998763

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.85  E-value=4.1e-22  Score=130.02  Aligned_cols=110  Identities=18%  Similarity=0.130  Sum_probs=88.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSIT----------AQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~   71 (112)
                      +++|||+||++++.+|..++++++++++|+|++          +..+++....|+..+.......++|+++++||+|+.+
T Consensus       163 l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~  242 (340)
T 4fid_A          163 FHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFE  242 (340)
T ss_dssp             EEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHH
T ss_pred             eccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhh
Confidence            789999999999999999999999999999998          6778888888888888765556799999999999853


Q ss_pred             cc---------------cccHHHHHHHHH-Hh--------------------------CCcEEEeecCCCCChhHHhhhh
Q psy785           72 ER---------------VVGKEQGASLAR-AF--------------------------ACTFLETSAKAKVNSWLCVECT  109 (112)
Q Consensus        72 ~~---------------~~~~~~~~~~~~-~~--------------------------~~~~~~~Sa~~~~~v~~~~~~l  109 (112)
                      .+               ....+++.+++. .+                          ++.+++|||+++.||..+|..+
T Consensus       243 eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v  322 (340)
T 4fid_A          243 EKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLA  322 (340)
T ss_dssp             HHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHH
T ss_pred             hhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHH
Confidence            21               113445544432 22                          3678999999999999999876


Q ss_pred             cc
Q psy785          110 ND  111 (112)
Q Consensus       110 ~~  111 (112)
                      .+
T Consensus       323 ~~  324 (340)
T 4fid_A          323 VD  324 (340)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.85  E-value=1.3e-20  Score=117.08  Aligned_cols=108  Identities=15%  Similarity=0.091  Sum_probs=78.8

Q ss_pred             ceEEeCCCc------ccc---hhhHHhhcccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGT------EQF---TAMRDLYMKNGQGFILVYSITAQSTFN--DLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~------~~~---~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      +.+|||||+      ++.   ...+..++..+|++++|+|++++.+++  ....|+..+...  ..+.|+++|+||+|+.
T Consensus        78 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~  155 (228)
T 2qu8_A           78 YQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKC  155 (228)
T ss_dssp             EEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGC
T ss_pred             EEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccC
Confidence            689999998      442   122344578899999999999987764  233566665542  1478999999999997


Q ss_pred             CcccccHH---HHHHHHHHhC--CcEEEeecCCCCChhHHhhhhcc
Q psy785           71 EERVVGKE---QGASLARAFA--CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        71 ~~~~~~~~---~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +.+.+...   ...+++...+  ++++++||++|.|++++|+++.+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~  201 (228)
T 2qu8_A          156 NMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACE  201 (228)
T ss_dssp             C--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHH
Confidence            65555443   3455666666  79999999999999999998764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.84  E-value=2.9e-21  Score=116.37  Aligned_cols=108  Identities=17%  Similarity=0.174  Sum_probs=82.4

Q ss_pred             CceEEeCCC-----------cccchhhHHhhccc-CCEEEEEEeCCChhhHHHH-HHHHHH--------HHhhcCCCCCc
Q psy785            1 MLEILDTAG-----------TEQFTAMRDLYMKN-GQGFILVYSITAQSTFNDL-SDLREQ--------ILRVKDTDDVP   59 (112)
Q Consensus         1 ~~~i~Dt~g-----------~~~~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------i~~~~~~~~~p   59 (112)
                      .+.+|||||           ++++..++..++++ ++++++++++.+..++..+ ..|...        +.......++|
T Consensus        45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  124 (190)
T 2cxx_A           45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP  124 (190)
T ss_dssp             TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC
T ss_pred             CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc
Confidence            368999999           77888888888887 7777777777777777765 566542        22222225789


Q ss_pred             EEEEeeCCCCCCcccccHHHHHHHHHHhCCc-------EEEeecCCCCChhHHhhhhcc
Q psy785           60 MVLVGNKCDLEEERVVGKEQGASLARAFACT-------FLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        60 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-------~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +++|+||+|+.+..   .+...++++.++.+       ++++||++|.|++++|+++.+
T Consensus       125 iilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  180 (190)
T 2cxx_A          125 TIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFE  180 (190)
T ss_dssp             EEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHH
T ss_pred             eEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHH
Confidence            99999999997543   45667778877764       799999999999999998864

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.83  E-value=5.8e-21  Score=131.22  Aligned_cols=105  Identities=15%  Similarity=0.175  Sum_probs=86.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||||++.+..++..+++++|++++|+|+++.   +.+..|+..+....  .+.|+++|+||+|+.+.+.+..+...
T Consensus       100 ~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~  174 (535)
T 3dpu_A          100 FHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKIN  174 (535)
T ss_dssp             EEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHH
T ss_pred             EEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHH
Confidence            78999999999999999999999999999999865   44567888887764  46899999999999876777777788


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +.+...+.+++++||++|.|++++++.+.+
T Consensus       175 ~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~  204 (535)
T 3dpu_A          175 ERFPAIENRFHRISCKNGDGVESIAKSLKS  204 (535)
T ss_dssp             HHCGGGTTCEEECCC-----CTTHHHHHHH
T ss_pred             HHHHhcCCceEEEecCcccCHHHHHHHHHH
Confidence            888888999999999999999999998763

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.83  E-value=3.3e-20  Score=120.03  Aligned_cols=106  Identities=15%  Similarity=0.044  Sum_probs=86.3

Q ss_pred             ceEEeCCCcccch----------hhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785            2 LEILDTAGTEQFT----------AMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~   71 (112)
                      +.||||||+.++.          ..+..+++++|++++|+|+++..+.+....|+..+..    .++|+++|+||+|+..
T Consensus        61 i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~  136 (308)
T 3iev_A           61 IIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIG  136 (308)
T ss_dssp             EEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSS
T ss_pred             EEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCC
Confidence            6899999986543          5667788999999999999998888877777777665    4689999999999974


Q ss_pred             cccccHHHHHHHHHHhC--CcEEEeecCCCCChhHHhhhhcc
Q psy785           72 ERVVGKEQGASLARAFA--CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        72 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+.........+...++  .+++++||++|.|++++|+.+.+
T Consensus       137 ~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~  178 (308)
T 3iev_A          137 PAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILK  178 (308)
T ss_dssp             SGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            44445666677777765  68999999999999999998753

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.82  E-value=1e-19  Score=110.34  Aligned_cols=109  Identities=28%  Similarity=0.436  Sum_probs=94.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||+|++++..++..++++++++++|+|.++..+++.+..|+..+.... ....|+++++||+|+.+.+......++
T Consensus        80 ~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i~~v~nK~Dl~~~~~~~~~~a~  158 (191)
T 1oix_A           80 AQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEAR  158 (191)
T ss_dssp             EEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHH
T ss_pred             EEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHH
Confidence            4679999999998888999999999999999999999988888988776542 246899999999999765666677788


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++...++.++++||+++.|++++|+.+.+
T Consensus       159 ~l~~~~~~~~ld~Sald~~~v~~l~~~l~~  188 (191)
T 1oix_A          159 AFAEKNGLSFIETSALDSTNVEAAFQTILT  188 (191)
T ss_dssp             HHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            888888999999999999999999998764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.82  E-value=1.9e-20  Score=112.81  Aligned_cols=102  Identities=17%  Similarity=0.147  Sum_probs=80.6

Q ss_pred             ceEEeCCCcccch------hhHHhhcc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQFT------AMRDLYMK--NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~   73 (112)
                      +++|||||++++.      .++..++.  +++++++++|.++   ++....|+..+..    .+.|+++|+||+|+...+
T Consensus        56 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~  128 (188)
T 2wjg_A           56 FKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSL  128 (188)
T ss_dssp             EEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHT
T ss_pred             EEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccc
Confidence            6899999999874      45666665  4999999999875   4555667777665    468999999999986544


Q ss_pred             cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+. ....++++.++++++++||++|.|++++|+++.+
T Consensus       129 ~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~  165 (188)
T 2wjg_A          129 GIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISI  165 (188)
T ss_dssp             TCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHH
T ss_pred             cch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHH
Confidence            333 3456777888999999999999999999998763

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.82  E-value=4.5e-20  Score=111.68  Aligned_cols=105  Identities=13%  Similarity=0.209  Sum_probs=77.7

Q ss_pred             CceEEeCCC----------cccchhhHHhhcccC---CEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCC
Q psy785            1 MLEILDTAG----------TEQFTAMRDLYMKNG---QGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKC   67 (112)
Q Consensus         1 ~~~i~Dt~g----------~~~~~~~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~   67 (112)
                      .+.+|||||          ++.+..++..+++++   |++++|+|++++.+..... +...+..    .+.|+++|+||+
T Consensus        70 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~p~i~v~nK~  144 (195)
T 1svi_A           70 ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY----YGIPVIVIATKA  144 (195)
T ss_dssp             TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH----TTCCEEEEEECG
T ss_pred             cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECc
Confidence            368999999          788888888888877   9999999999877665532 1222222    568999999999


Q ss_pred             CCCCcccccHHHHHHHHH----HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           68 DLEEERVVGKEQGASLAR----AFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        68 D~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      |+.+.+.... ...+..+    ..+.+++++||++|.|++++|+++.+
T Consensus       145 Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  191 (195)
T 1svi_A          145 DKIPKGKWDK-HAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKK  191 (195)
T ss_dssp             GGSCGGGHHH-HHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ccCChHHHHH-HHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHH
Confidence            9976544321 2222222    23569999999999999999998864

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.82  E-value=2.8e-20  Score=118.56  Aligned_cols=103  Identities=17%  Similarity=0.157  Sum_probs=81.0

Q ss_pred             CceEEeCCCcccch------hhHHhhcc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785            1 MLEILDTAGTEQFT------AMRDLYMK--NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE   72 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~   72 (112)
                      .+++|||||++++.      .+.+.++.  ++|++++|+|+++.++.   ..|...+.+    .++|+++++||+|+.+.
T Consensus        50 ~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~  122 (272)
T 3b1v_A           50 DLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDG  122 (272)
T ss_dssp             TEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHH
T ss_pred             eEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCc
Confidence            37899999999875      45666765  69999999999886543   346555554    46899999999998654


Q ss_pred             ccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           73 RVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +.+. .....+++.++++++++||++|.|++++|+++.+
T Consensus       123 ~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~  160 (272)
T 3b1v_A          123 QGKK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAH  160 (272)
T ss_dssp             TTCC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHH
T ss_pred             CCcH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHH
Confidence            4333 3456777888999999999999999999998764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.81  E-value=4.7e-20  Score=110.06  Aligned_cols=99  Identities=25%  Similarity=0.251  Sum_probs=73.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQ---STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKE   78 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~   78 (112)
                      +.+|||||++++..++..+++++|++++|+|++++   .+++.+    ..+..    .++|+++|+||+|+.+..   .+
T Consensus        57 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l----~~~~~----~~~p~ilv~nK~Dl~~~~---~~  125 (178)
T 2lkc_A           57 ITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAI----NHAKA----ANVPIIVAINKMDKPEAN---PD  125 (178)
T ss_dssp             EEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHH----HHHGG----GSCCEEEEEETTTSSCSC---HH
T ss_pred             EEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH----HHHHh----CCCCEEEEEECccCCcCC---HH
Confidence            67999999999998888899999999999999884   344322    22222    468999999999997531   22


Q ss_pred             HHHHHHHHh-------C--CcEEEeecCCCCChhHHhhhhcc
Q psy785           79 QGASLARAF-------A--CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        79 ~~~~~~~~~-------~--~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .........       +  ++++++||++|.|++++|+++.+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  167 (178)
T 2lkc_A          126 RVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILL  167 (178)
T ss_dssp             HHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHH
Confidence            222222222       2  48999999999999999998864

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.81  E-value=2.5e-20  Score=109.59  Aligned_cols=100  Identities=18%  Similarity=0.133  Sum_probs=73.9

Q ss_pred             ceEEeCCCccc-------chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc
Q psy785            2 LEILDTAGTEQ-------FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV   74 (112)
Q Consensus         2 ~~i~Dt~g~~~-------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~   74 (112)
                      +.+|||||++.       +...+..+++++|++++++|.++..+...  .|+......   .+.|+++|+||+|+.+.. 
T Consensus        51 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~p~ilv~nK~Dl~~~~-  124 (161)
T 2dyk_A           51 FLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR---KGKPVILVATKVDDPKHE-  124 (161)
T ss_dssp             EEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH---HTCCEEEEEECCCSGGGG-
T ss_pred             EEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh---cCCCEEEEEECcccccch-
Confidence            67999999887       34566778899999999999988543322  222222222   458999999999997542 


Q ss_pred             ccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           75 VGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        75 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                         +...+++ +.++ +++++||++|.|++++|+++.+
T Consensus       125 ---~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~  158 (161)
T 2dyk_A          125 ---LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWE  158 (161)
T ss_dssp             ---GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHH
T ss_pred             ---HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHH
Confidence               2223344 5677 8999999999999999998864

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.81  E-value=2.6e-20  Score=114.71  Aligned_cols=101  Identities=15%  Similarity=0.232  Sum_probs=74.7

Q ss_pred             CceEEeCCCcccchhhHHhhccc----CCEEEEEEeCC-ChhhHHHHHHHHHHHHhhcC---CCCCcEEEEeeCCCCCCc
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKN----GQGFILVYSIT-AQSTFNDLSDLREQILRVKD---TDDVPMVLVGNKCDLEEE   72 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~----~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~D~~~~   72 (112)
                      .+.+|||||++++...+..++++    +|++++|+|++ ++.++.....|+..+.....   ..++|+++|+||+|+.+.
T Consensus        56 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  135 (218)
T 1nrj_B           56 GVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  135 (218)
T ss_dssp             SCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             eEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence            37899999999998888888887    99999999999 88899988889888876532   257999999999999765


Q ss_pred             cccc------HHHHHHHHHHhCCcEEEeecCCCCC
Q psy785           73 RVVG------KEQGASLARAFACTFLETSAKAKVN  101 (112)
Q Consensus        73 ~~~~------~~~~~~~~~~~~~~~~~~Sa~~~~~  101 (112)
                      ....      .++...++...+.+++++||++|.+
T Consensus       136 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          136 RPPSKIKDALESEIQKVIERRKKSLNEVERKINEE  170 (218)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence            5433      3345556666677889999998764

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.80  E-value=1.2e-19  Score=114.85  Aligned_cols=102  Identities=16%  Similarity=0.089  Sum_probs=79.4

Q ss_pred             ceEEeCCCcccchh------hHHhhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQFTA------MRDLYM--KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~   73 (112)
                      +++|||||+..+..      +.+.++  .++|++++|+|.++.++..   .|...+.+    .++|+++++||+|+.+.+
T Consensus        54 ~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~---~~~~~l~~----~~~pvilv~NK~Dl~~~~  126 (258)
T 3a1s_A           54 INLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSL---YLLLEILE----MEKKVILAMTAIDEAKKT  126 (258)
T ss_dssp             EEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHH---HHHHHHHT----TTCCEEEEEECHHHHHHT
T ss_pred             EEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHH---HHHHHHHh----cCCCEEEEEECcCCCCcc
Confidence            68999999987754      335555  5899999999999876443   35555554    468999999999986544


Q ss_pred             cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+. ....++++.++++++++||++|.|++++|+++.+
T Consensus       127 ~i~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~  163 (258)
T 3a1s_A          127 GMK-IDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVE  163 (258)
T ss_dssp             TCC-BCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHH
T ss_pred             chH-HHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHH
Confidence            433 2356778888999999999999999999998753

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.79  E-value=3.7e-20  Score=117.10  Aligned_cols=102  Identities=17%  Similarity=0.176  Sum_probs=77.9

Q ss_pred             ceEEeCCCcccchh----------hHHhhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785            2 LEILDTAGTEQFTA----------MRDLYM--KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL   69 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~----------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~   69 (112)
                      +.+|||||+..+..          +.+.++  +++|++++|+|+++.++...+..|   +.+    .++|+++|+||+|+
T Consensus        50 ~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~---l~~----~~~pvilv~NK~Dl  122 (256)
T 3iby_A           50 IEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQ---LFE----LGKPVVVALNMMDI  122 (256)
T ss_dssp             EEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHH---HTT----SCSCEEEEEECHHH
T ss_pred             EEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHH---HHH----cCCCEEEEEEChhc
Confidence            68999999987753          556666  899999999999987655443333   332    46899999999998


Q ss_pred             CCcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           70 EEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+.+... .....+.+.++++++++||++|.|++++|+++.+
T Consensus       123 ~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~  163 (256)
T 3iby_A          123 AEHRGIS-IDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLH  163 (256)
T ss_dssp             HHHTTCE-ECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHT
T ss_pred             CCcCCcH-HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHh
Confidence            6433321 1234577778999999999999999999999864

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.79  E-value=3.4e-19  Score=120.51  Aligned_cols=105  Identities=19%  Similarity=0.136  Sum_probs=80.9

Q ss_pred             ceEEeCCC----------cccchhhHHh-hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAG----------TEQFTAMRDL-YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g----------~~~~~~~~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      +++|||||          +++|..++.. +++++|++++|+|+++..+.. ...|...+..    .++|+++|+||+|+.
T Consensus       245 ~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~----~~~~~ilv~NK~Dl~  319 (456)
T 4dcu_A          245 FVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE----AGKAVVIVVNKWDAV  319 (456)
T ss_dssp             EEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH----TTCEEEEEEECGGGS
T ss_pred             EEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH----cCCCEEEEEEChhcC
Confidence            68999999          7888776654 789999999999998754322 2345555544    568999999999998


Q ss_pred             CcccccHHHHHHHHHHh-----CCcEEEeecCCCCChhHHhhhhcc
Q psy785           71 EERVVGKEQGASLARAF-----ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        71 ~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +.+....++..+.+++.     +.+++++||++|.|++++|+.+.+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~  365 (456)
T 4dcu_A          320 DKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIK  365 (456)
T ss_dssp             CCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHH
Confidence            66655556666665554     469999999999999999998753

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.79  E-value=1.3e-20  Score=112.65  Aligned_cols=101  Identities=15%  Similarity=0.250  Sum_probs=74.6

Q ss_pred             ceEEeCCCcccchh------h--HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQFTA------M--RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~------~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~   73 (112)
                      +++|||||++++..      +  ...+++++|++++|+|++++.+++. ..|+..+.+.. ..++|+++|+||+|+.+..
T Consensus        54 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~  131 (172)
T 2gj8_A           54 LHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARL-PAKLPITVVRNKADITGET  131 (172)
T ss_dssp             EEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS-CTTCCEEEEEECHHHHCCC
T ss_pred             EEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc-ccCCCEEEEEECccCCcch
Confidence            58999999875321      1  1235889999999999998887653 46777766543 2468999999999985421


Q ss_pred             cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .       .++...+.+++++||++|.|++++|+++.+
T Consensus       132 ~-------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~  162 (172)
T 2gj8_A          132 L-------GMSEVNGHALIRLSARTGEGVDVLRNHLKQ  162 (172)
T ss_dssp             C-------EEEEETTEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             h-------hhhhccCCceEEEeCCCCCCHHHHHHHHHH
Confidence            1       111224668999999999999999998864

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.79  E-value=6.4e-19  Score=106.36  Aligned_cols=103  Identities=15%  Similarity=0.115  Sum_probs=75.9

Q ss_pred             ceEEeCCC----------cccchhhHHhhcccC---CEEEEEEeCCChhhH--HHHHHHHHHHHhhcCCCCCcEEEEeeC
Q psy785            2 LEILDTAG----------TEQFTAMRDLYMKNG---QGFILVYSITAQSTF--NDLSDLREQILRVKDTDDVPMVLVGNK   66 (112)
Q Consensus         2 ~~i~Dt~g----------~~~~~~~~~~~~~~~---d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ivv~nK   66 (112)
                      +.+|||||          ++.+..++..+++++   +++++|+|.++..+.  ..+..|+..       .+.|+++|+||
T Consensus        70 ~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK  142 (195)
T 3pqc_A           70 YYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-------LNIPFTIVLTK  142 (195)
T ss_dssp             EEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEEC
T ss_pred             EEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH-------cCCCEEEEEEC
Confidence            67999999          777888888888776   999999998775433  333334332       25899999999


Q ss_pred             CCCCCccc--ccHHHHHHHHHHhC-CcEEEeecCCCCChhHHhhhhcc
Q psy785           67 CDLEEERV--VGKEQGASLARAFA-CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        67 ~D~~~~~~--~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +|+.+...  ...+...+++...+ ++++++||++|.|++++|+++.+
T Consensus       143 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  190 (195)
T 3pqc_A          143 MDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLIST  190 (195)
T ss_dssp             GGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHH
T ss_pred             hhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHH
Confidence            99975332  22334445555433 69999999999999999999864

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.77  E-value=2.5e-19  Score=114.30  Aligned_cols=102  Identities=16%  Similarity=0.177  Sum_probs=76.2

Q ss_pred             ceEEeCCCcccch----------hhHHhhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785            2 LEILDTAGTEQFT----------AMRDLYM--KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL   69 (112)
Q Consensus         2 ~~i~Dt~g~~~~~----------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~   69 (112)
                      +.+|||||+.++.          ...+.++  +++|++++|+|.++.+....+   ...+.+    .++|+++|+||+|+
T Consensus        52 ~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~---~~~l~~----~~~p~ivv~NK~Dl  124 (274)
T 3i8s_A           52 VTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYL---TLQLLE----LGIPCIVALNMLDI  124 (274)
T ss_dssp             EEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHH---HHHHHH----HTCCEEEEEECHHH
T ss_pred             eEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHH---HHHHHh----cCCCEEEEEECccc
Confidence            6799999988765          2233343  799999999999986655443   333443    25899999999998


Q ss_pred             CCcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           70 EEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+.+... .....+.+.++++++++||++|.|++++++++.+
T Consensus       125 ~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~  165 (274)
T 3i8s_A          125 AEKQNIR-IEIDALSARLGCPVIPLVSTRGRGIEALKLAIDR  165 (274)
T ss_dssp             HHHTTEE-ECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHT
T ss_pred             hhhhhHH-HHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            6433321 2245677788999999999999999999998864

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.77  E-value=2.8e-18  Score=114.48  Aligned_cols=107  Identities=17%  Similarity=0.106  Sum_probs=80.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc--HHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG--KEQ   79 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~   79 (112)
                      +.+|||||+++|...+...++++|++++|+|+++..+......|+..+...   ...|+++++||+|+.+.....  .++
T Consensus        77 ~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~  153 (403)
T 3sjy_A           77 ISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQ  153 (403)
T ss_dssp             EEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred             EEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHH
Confidence            679999999999999999999999999999999876666666676655443   235899999999997533211  112


Q ss_pred             HHHHHHHh---CCcEEEeecCCCCChhHHhhhhcc
Q psy785           80 GASLARAF---ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        80 ~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..++....   +++++++||++|.|++++++.+.+
T Consensus       154 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~  188 (403)
T 3sjy_A          154 IKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEE  188 (403)
T ss_dssp             HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHH
Confidence            22222221   568999999999999999998753

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.77  E-value=7.3e-19  Score=118.33  Aligned_cols=104  Identities=17%  Similarity=0.114  Sum_probs=78.7

Q ss_pred             ceEEeCCCc----------ccchhhHH-hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGT----------EQFTAMRD-LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~----------~~~~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      +++|||||+          ++|..+.. .+++++|++++|+|++++.+.+.. .|...+..    .++|+++|+||+|+.
T Consensus       225 ~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~  299 (436)
T 2hjg_A          225 FVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAV  299 (436)
T ss_dssp             EEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGS
T ss_pred             EEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCC
Confidence            689999998          55655544 478999999999999998887765 46666654    568999999999997


Q ss_pred             CcccccHHHHHH-HHHH----hCCcEEEeecCCCCChhHHhhhhc
Q psy785           71 EERVVGKEQGAS-LARA----FACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        71 ~~~~~~~~~~~~-~~~~----~~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      +.+....++..+ +.+.    .+.+++++||++|.|++++|+.+.
T Consensus       300 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~  344 (436)
T 2hjg_A          300 DKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAII  344 (436)
T ss_dssp             CCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHH
T ss_pred             CcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHH
Confidence            654433333322 2222    256999999999999999998765

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.77  E-value=1.7e-18  Score=106.78  Aligned_cols=106  Identities=15%  Similarity=0.059  Sum_probs=73.7

Q ss_pred             CceEEeCCC----------cccchhhHHhhccc---CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCC
Q psy785            1 MLEILDTAG----------TEQFTAMRDLYMKN---GQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKC   67 (112)
Q Consensus         1 ~~~i~Dt~g----------~~~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~   67 (112)
                      .+.||||||          ++.+..++..++++   +|++++|+|.++..+.. ...|+..+..    .++|+++|+||+
T Consensus        80 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~----~~~p~i~v~nK~  154 (223)
T 4dhe_A           80 VAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP----TGKPIHSLLTKC  154 (223)
T ss_dssp             SEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG----GCCCEEEEEECG
T ss_pred             cEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh----cCCCEEEEEecc
Confidence            368999999          45566677777766   78899999998753322 2334444443    468999999999


Q ss_pred             CCCCccccc--HHHHHHHHHH-------hCCcEEEeecCCCCChhHHhhhhcc
Q psy785           68 DLEEERVVG--KEQGASLARA-------FACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        68 D~~~~~~~~--~~~~~~~~~~-------~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      |+.+.....  .....+....       .+.+++++||++|.|++++|+++.+
T Consensus       155 Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~  207 (223)
T 4dhe_A          155 DKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIES  207 (223)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHH
T ss_pred             ccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHH
Confidence            997543321  1222222232       3458999999999999999998863

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.76  E-value=6.8e-18  Score=117.14  Aligned_cols=103  Identities=20%  Similarity=0.179  Sum_probs=83.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      ++||||||+++|...+...++.+|++++|+|+++..+.+....|.....     .++|+++++||+|+.+..  ......
T Consensus        73 l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a~--~~~v~~  145 (599)
T 3cb4_D           73 LNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAAD--PERVAE  145 (599)
T ss_dssp             EEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC--HHHHHH
T ss_pred             EEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCccccc--HHHHHH
Confidence            6899999999999999999999999999999998777777777765543     458999999999997532  233345


Q ss_pred             HHHHHhCC---cEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFAC---TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~---~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++...+++   +++++||++|.|++++++.+.+
T Consensus       146 ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~  178 (599)
T 3cb4_D          146 EIEDIVGIDATDAVRCSAKTGVGVQDVLERLVR  178 (599)
T ss_dssp             HHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHH
T ss_pred             HHHHHhCCCcceEEEeecccCCCchhHHHHHhh
Confidence            56666666   5999999999999999998753

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.76  E-value=1.9e-18  Score=111.59  Aligned_cols=98  Identities=21%  Similarity=0.075  Sum_probs=81.2

Q ss_pred             cccchhhHHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc-HHHHHHHHHHh
Q psy785           10 TEQFTAMRDLYMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG-KEQGASLARAF   87 (112)
Q Consensus        10 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~   87 (112)
                      +++++.+.+.+++++|++++|+|++++. +++.+..|+..+..    .++|+++|+||+|+.+...+. .+....+.+..
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~  141 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRDA  141 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHHC
Confidence            7888889999999999999999999886 88888999887665    569999999999997543222 33445566667


Q ss_pred             CCcEEEeecCCCCChhHHhhhhcc
Q psy785           88 ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        88 ~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +++++++||++|.|++++++.+..
T Consensus       142 g~~~~~~SA~~g~gi~~L~~~l~G  165 (302)
T 2yv5_A          142 GYDVLKVSAKTGEGIDELVDYLEG  165 (302)
T ss_dssp             TCEEEECCTTTCTTHHHHHHHTTT
T ss_pred             CCeEEEEECCCCCCHHHHHhhccC
Confidence            899999999999999999987653

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.76  E-value=5.7e-19  Score=118.34  Aligned_cols=101  Identities=19%  Similarity=0.165  Sum_probs=79.0

Q ss_pred             ceEEeCCCcccchhh-------HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc
Q psy785            2 LEILDTAGTEQFTAM-------RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV   74 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~   74 (112)
                      +.+|||||++++..+       ...+++++|++++|+|++...   ....|+..+.+    .++|+++|+||+|+.+...
T Consensus        85 l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~----~~~piIvV~NK~Dl~~~~~  157 (423)
T 3qq5_A           85 VTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTP---YEDDVVNLFKE----MEIPFVVVVNKIDVLGEKA  157 (423)
T ss_dssp             EEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCH---HHHHHHHHHHH----TTCCEEEECCCCTTTTCCC
T ss_pred             EEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChH---HHHHHHHHHHh----cCCCEEEEEeCcCCCCccH
Confidence            689999999877543       455788999999999984332   33457776666    3689999999999976544


Q ss_pred             ccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           75 VGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .  +...++++.++++++++||++|.|++++|+.+.+
T Consensus       158 ~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~  192 (423)
T 3qq5_A          158 E--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISE  192 (423)
T ss_dssp             T--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHH
T ss_pred             H--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3  4455566667889999999999999999998764

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.75  E-value=1.2e-17  Score=115.94  Aligned_cols=103  Identities=17%  Similarity=0.206  Sum_probs=83.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      ++||||||+++|...+...++.+|++++|+|+++..+.+....|.....     .++|+++++||+|+....  ......
T Consensus        75 inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a~--~~~v~~  147 (600)
T 2ywe_A           75 LHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSAD--VDRVKK  147 (600)
T ss_dssp             EEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC--HHHHHH
T ss_pred             EEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCccccC--HHHHHH
Confidence            6799999999999888889999999999999999877777777765442     468999999999996532  123344


Q ss_pred             HHHHHhCC---cEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFAC---TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~---~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++...+++   +++++||++|.|++++++.+.+
T Consensus       148 el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~  180 (600)
T 2ywe_A          148 QIEEVLGLDPEEAILASAKEGIGIEEILEAIVN  180 (600)
T ss_dssp             HHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHhhCCCcccEEEEEeecCCCchHHHHHHHH
Confidence            55555666   5999999999999999998753

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.75  E-value=4.4e-18  Score=115.54  Aligned_cols=104  Identities=15%  Similarity=0.112  Sum_probs=66.6

Q ss_pred             ceEEeCCCcccchhhH--------HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQFTAMR--------DLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~--------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~   73 (112)
                      +.+|||||++++...+        ..+++++|++++|+|.+++.+++.+..+...+...   .++|+++|+||+|+.+..
T Consensus       283 l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l---~~~piIvV~NK~Dl~~~~  359 (476)
T 3gee_A          283 FRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH---PAAKFLTVANKLDRAANA  359 (476)
T ss_dssp             EEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC---TTSEEEEEEECTTSCTTT
T ss_pred             EEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc---CCCCEEEEEECcCCCCcc
Confidence            6899999998766443        33688999999999999987765332222222222   268999999999997644


Q ss_pred             cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ...   ..++......+++++||++|.|++++++++.+
T Consensus       360 ~~~---~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~  394 (476)
T 3gee_A          360 DAL---IRAIADGTGTEVIGISALNGDGIDTLKQHMGD  394 (476)
T ss_dssp             HHH---HHHHHHHHTSCEEECBTTTTBSHHHHHHHHTH
T ss_pred             chh---HHHHHhcCCCceEEEEECCCCCHHHHHHHHHH
Confidence            331   13333332368999999999999999998864

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.75  E-value=1.6e-17  Score=109.36  Aligned_cols=106  Identities=18%  Similarity=0.171  Sum_probs=81.8

Q ss_pred             ceEEeCCCcccch---------hhHHhhcccCCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFT---------AMRDLYMKNGQGFILVYSITAQS--TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~---------~~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      +.+|||||+....         .........+|++++|+|++++.  +++....|+..+.....  +.|+++|+||+|+.
T Consensus       216 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~  293 (357)
T 2e87_A          216 YQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVA  293 (357)
T ss_dssp             EEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTC
T ss_pred             EEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccC
Confidence            6899999975431         12223456799999999998876  67777888888876542  68999999999997


Q ss_pred             CcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           71 EERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +...+  +....++...+++++++||++|.|++++++++.+
T Consensus       294 ~~~~~--~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~  332 (357)
T 2e87_A          294 DEENI--KRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIK  332 (357)
T ss_dssp             CHHHH--HHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHH
T ss_pred             ChHHH--HHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHH
Confidence            54332  3455566677889999999999999999998764

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.74  E-value=2.4e-18  Score=112.71  Aligned_cols=106  Identities=12%  Similarity=0.215  Sum_probs=82.6

Q ss_pred             ceEEeCCCccc----chhhHHhh---cccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcC-CCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQ----FTAMRDLY---MKNGQGFILVYSITA---QSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~----~~~~~~~~---~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~~   70 (112)
                      +.+|||||+..    +..+...+   +++++++++|+|+++   .++++.+..|..++..+.. ...+|+++|+||+|+.
T Consensus       208 ~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~  287 (342)
T 1lnz_A          208 FVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP  287 (342)
T ss_dssp             EEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST
T ss_pred             EEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCC
Confidence            68999999643    33344444   456999999999998   7889999899999887643 2579999999999986


Q ss_pred             CcccccHHHHHHHHHHhC--CcEEEeecCCCCChhHHhhhhcc
Q psy785           71 EERVVGKEQGASLARAFA--CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +..    +...++.+.++  .+++++||+++.|++++++++.+
T Consensus       288 ~~~----e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~  326 (342)
T 1lnz_A          288 EAA----ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVAN  326 (342)
T ss_dssp             THH----HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHH
T ss_pred             CCH----HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHH
Confidence            422    33455666665  68999999999999999998763

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.74  E-value=2.7e-18  Score=109.26  Aligned_cols=103  Identities=16%  Similarity=0.124  Sum_probs=77.8

Q ss_pred             ceEEeCCCcccchh------hHHhhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQFTA------MRDLYM--KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~   73 (112)
                      +.+|||||+..+..      ..+.++  .++|++++|+|.++.+.   ...|...+.+.   ...|+++++||+|+.+.+
T Consensus        52 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~---~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~  125 (271)
T 3k53_A           52 FLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMR---NLFLTLELFEM---EVKNIILVLNKFDLLKKK  125 (271)
T ss_dssp             EEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHH---HHHHHHHHHHT---TCCSEEEEEECHHHHHHH
T ss_pred             EEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchh---hHHHHHHHHhc---CCCCEEEEEEChhcCccc
Confidence            68999999988765      566666  68999999999987642   23344444442   238999999999986433


Q ss_pred             cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .... ....+.+.++++++++||++|.|+.++++.+.+
T Consensus       126 ~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~  162 (271)
T 3k53_A          126 GAKI-DIKKMRKELGVPVIPTNAKKGEGVEELKRMIAL  162 (271)
T ss_dssp             TCCC-CHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHH
T ss_pred             ccHH-HHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            3222 256677788999999999999999999998753

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.73  E-value=1.3e-17  Score=107.58  Aligned_cols=102  Identities=16%  Similarity=0.099  Sum_probs=73.5

Q ss_pred             ceEEeCCCccc--------chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHH-HHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785            2 LEILDTAGTEQ--------FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLR-EQILRVKDTDDVPMVLVGNKCDLEEE   72 (112)
Q Consensus         2 ~~i~Dt~g~~~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~~p~ivv~nK~D~~~~   72 (112)
                      +.||||||+.+        +......+++++|++++|+|++++.+..  ..|+ ..+.+..  .+.|+++|+||+|+.+.
T Consensus        57 l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~--~~~p~ilV~NK~Dl~~~  132 (301)
T 1wf3_A           57 IVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV--GKVPILLVGNKLDAAKY  132 (301)
T ss_dssp             EEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT--TTSCEEEEEECGGGCSS
T ss_pred             EEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc--CCCCEEEEEECcccCCc
Confidence            68999999876        4556677899999999999998764433  2444 3444321  36899999999998653


Q ss_pred             ccccHHHHHHHHHH-hC-CcEEEeecCCCCChhHHhhhhcc
Q psy785           73 RVVGKEQGASLARA-FA-CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        73 ~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ...    ....... .+ .+++++||++|.|++++++.+.+
T Consensus       133 ~~~----~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~  169 (301)
T 1wf3_A          133 PEE----AMKAYHELLPEAEPRMLSALDERQVAELKADLLA  169 (301)
T ss_dssp             HHH----HHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHT
T ss_pred             hHH----HHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHH
Confidence            320    1222222 23 37899999999999999998864

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.72  E-value=4e-17  Score=109.11  Aligned_cols=103  Identities=22%  Similarity=0.205  Sum_probs=70.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC----hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc--c
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA----QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV--V   75 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~--~   75 (112)
                      +.||||||+++|...+...+..+|++++|+|+++    +.+.+.+..|    ...   ...|+++++||+|+.+...  .
T Consensus        83 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l---~~~~iivv~NK~Dl~~~~~~~~  155 (408)
T 1s0u_A           83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EIL---GIDKIIIVQNKIDLVDEKQAEE  155 (408)
T ss_dssp             EEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHT---TCCCEEEEEECTTSSCTTTTTT
T ss_pred             EEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HHc---CCCeEEEEEEccCCCCHHHHHH
Confidence            6899999999998877777888999999999985    4445444322    221   2258999999999975432  2


Q ss_pred             cHHHHHHHHHH---hCCcEEEeecCCCCChhHHhhhhcc
Q psy785           76 GKEQGASLARA---FACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        76 ~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..++..++...   .+++++++||++|.|++++++.+.+
T Consensus       156 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~  194 (408)
T 1s0u_A          156 NYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQD  194 (408)
T ss_dssp             HHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            23444555544   2569999999999999999998753

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.71  E-value=9.2e-17  Score=109.23  Aligned_cols=100  Identities=18%  Similarity=0.142  Sum_probs=73.8

Q ss_pred             ceEEeCCCcc-cch--------hhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785            2 LEILDTAGTE-QFT--------AMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE   72 (112)
Q Consensus         2 ~~i~Dt~g~~-~~~--------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~   72 (112)
                      +.+|||||++ .+.        .....+++++|++++|+|++++.+++... ++..+      .++|+++|+||+|+.+.
T Consensus       293 ~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l------~~~piivV~NK~DL~~~  365 (482)
T 1xzp_A          293 FRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-ILERI------KNKRYLVVINKVDVVEK  365 (482)
T ss_dssp             EEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-HHHHH------TTSSEEEEEEECSSCCC
T ss_pred             EEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHH-HHHHh------cCCCEEEEEECcccccc
Confidence            6899999988 553        23456789999999999999887776543 22222      35899999999999642


Q ss_pred             ccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           73 RVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                        ...++..++.. .+.+++++||++|.|++++++++.+
T Consensus       366 --~~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL~~~l~~  401 (482)
T 1xzp_A          366 --INEEEIKNKLG-TDRHMVKISALKGEGLEKLEESIYR  401 (482)
T ss_dssp             --CCHHHHHHHHT-CSTTEEEEEGGGTCCHHHHHHHHHH
T ss_pred             --cCHHHHHHHhc-CCCcEEEEECCCCCCHHHHHHHHHH
Confidence              33333333322 3468999999999999999998764

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.70  E-value=2e-16  Score=108.59  Aligned_cols=65  Identities=17%  Similarity=0.196  Sum_probs=53.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~   71 (112)
                      +.||||||+++|...+..+++.+|++++|+|+++..+.+....|. .+..    .++|+++|+||+|+..
T Consensus        84 i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~----~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           84 INLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL----RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             EEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT----TTCCEEEEEECTTSCC
T ss_pred             EEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCEEEEEeCCCCcc
Confidence            689999999999999999999999999999999876666655453 3332    4689999999999864

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.70  E-value=1.9e-17  Score=111.45  Aligned_cols=105  Identities=20%  Similarity=0.168  Sum_probs=75.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCC-cEEEEeeCCCCCCcc----
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD---TDDV-PMVLVGNKCDLEEER----   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~-p~ivv~nK~D~~~~~----   73 (112)
                      +.||||||+++|...+...++.+|++++|+|+++ .+++....|.....++..   ..++ |+++++||+|+.+..    
T Consensus        86 ~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~  164 (435)
T 1jny_A           86 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEK  164 (435)
T ss_dssp             EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHH
T ss_pred             EEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHH
Confidence            6899999999999888889999999999999998 667654443333322211   1234 689999999997521    


Q ss_pred             --cccHHHHHHHHHHhC-----CcEEEeecCCCCChhHHhh
Q psy785           74 --VVGKEQGASLARAFA-----CTFLETSAKAKVNSWLCVE  107 (112)
Q Consensus        74 --~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~~  107 (112)
                        ....++..+++...+     ++++++||++|.|+.+++.
T Consensus       165 ~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          165 RYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             HHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence              112344555666655     6799999999999986543

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.69  E-value=2.9e-17  Score=111.79  Aligned_cols=102  Identities=11%  Similarity=0.040  Sum_probs=67.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHH-----HHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFND-----LSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG   76 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~   76 (112)
                      +.||||||+++|...+...++++|++++|+|+++..+...     ...+...+....  ...|+++++||+|+.+.....
T Consensus       113 ~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~~~  190 (483)
T 3p26_A          113 FTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQQR  190 (483)
T ss_dssp             EEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCHHH
T ss_pred             EEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchHHH
Confidence            6899999999999999999999999999999988643221     111111122211  225699999999997533222


Q ss_pred             HHH----HHHHHHHh-----CCcEEEeecCCCCChhHH
Q psy785           77 KEQ----GASLARAF-----ACTFLETSAKAKVNSWLC  105 (112)
Q Consensus        77 ~~~----~~~~~~~~-----~~~~~~~Sa~~~~~v~~~  105 (112)
                      .++    ...+....     +++++++||++|.|+.++
T Consensus       191 ~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          191 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             HHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            222    23333333     357899999999999864

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.69  E-value=1.5e-16  Score=107.09  Aligned_cols=102  Identities=21%  Similarity=0.046  Sum_probs=73.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCC-cEEEEeeCCCCCCccc--c--c
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDV-PMVLVGNKCDLEEERV--V--G   76 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-p~ivv~nK~D~~~~~~--~--~   76 (112)
                      +.||||||+++|...+...++++|++++|+|+++....+ ...++..+..    .+. |+++++||+|+.+...  .  .
T Consensus       106 ~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~----~~~~~iIvviNK~Dl~~~~~~~~~~i  180 (434)
T 1zun_B          106 FIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASL----LGIKHIVVAINKMDLNGFDERVFESI  180 (434)
T ss_dssp             EEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEEECTTTTTSCHHHHHHH
T ss_pred             EEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCeEEEEEEcCcCCcccHHHHHHH
Confidence            689999999999888888899999999999998754322 2334333333    234 6899999999975211  1  1


Q ss_pred             HHHHHHHHHHhC-----CcEEEeecCCCCChhHHhhh
Q psy785           77 KEQGASLARAFA-----CTFLETSAKAKVNSWLCVEC  108 (112)
Q Consensus        77 ~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~~~  108 (112)
                      ..+..++++..+     ++++++||++|.|+.++++.
T Consensus       181 ~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~  217 (434)
T 1zun_B          181 KADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER  217 (434)
T ss_dssp             HHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred             HHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence            234455666666     68999999999999886543

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.69  E-value=1e-16  Score=107.15  Aligned_cols=103  Identities=18%  Similarity=0.171  Sum_probs=74.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC----hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc--
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA----QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV--   75 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~--   75 (112)
                      +.||||||+++|.......+..+|++++|+|+++    +.+.+.+..|    ...   ...|+++++||+|+.+....  
T Consensus        85 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~---~~~~iivviNK~Dl~~~~~~~~  157 (410)
T 1kk1_A           85 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QII---GQKNIIIAQNKIELVDKEKALE  157 (410)
T ss_dssp             EEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHH---TCCCEEEEEECGGGSCHHHHHH
T ss_pred             EEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHc---CCCcEEEEEECccCCCHHHHHH
Confidence            6899999999998777777889999999999985    3444444322    221   22589999999999753321  


Q ss_pred             cHHHHHHHHHH---hCCcEEEeecCCCCChhHHhhhhcc
Q psy785           76 GKEQGASLARA---FACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        76 ~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..++..++...   .+++++++||++|.|++++++.+.+
T Consensus       158 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~  196 (410)
T 1kk1_A          158 NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIED  196 (410)
T ss_dssp             HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            12233344433   2569999999999999999998753

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.69  E-value=1.5e-16  Score=108.30  Aligned_cols=102  Identities=12%  Similarity=0.053  Sum_probs=76.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc--c
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV--G   76 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~--~   76 (112)
                      +.+|||||+++|...+...++++|++++|+|+++   +.+.+.+.    .+..    .++|.++++||+|+.+....  .
T Consensus        75 i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~----~~ip~IvviNK~Dl~~~~~~~~~  146 (482)
T 1wb1_A           75 ITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML----ILDH----FNIPIIVVITKSDNAGTEEIKRT  146 (482)
T ss_dssp             EEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH----TTCCBCEEEECTTSSCHHHHHHH
T ss_pred             EEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHH----HHHH----cCCCEEEEEECCCcccchhHHHH
Confidence            6899999999998888889999999999999987   44444332    2222    35888999999999753211  1


Q ss_pred             HHHHHHHHHHh----CCcEEEeecCCCCChhHHhhhhcc
Q psy785           77 KEQGASLARAF----ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        77 ~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++..++....    +.+++++||++|.|++++++.+.+
T Consensus       147 ~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~  185 (482)
T 1wb1_A          147 EMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIIT  185 (482)
T ss_dssp             HHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHH
Confidence            23344455444    568999999999999999998754

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.68  E-value=2.6e-16  Score=109.27  Aligned_cols=101  Identities=21%  Similarity=0.119  Sum_probs=73.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc---
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV---   75 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~---   75 (112)
                      ++||||||+++|..++...++.+|++++|+|+++   +.+++.+..    +..    .++|+++++||+|+.+....   
T Consensus        72 i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~----~~vPiIVViNKiDl~~~~~~~~~  143 (594)
T 1g7s_A           72 LFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM----YRTPFVVAANKIDRIHGWRVHEG  143 (594)
T ss_dssp             EEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH----TTCCEEEEEECGGGSTTCCCCTT
T ss_pred             EEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH----cCCeEEEEecccccccccccccC
Confidence            6899999999999988888999999999999998   666654432    222    46899999999998642110   


Q ss_pred             ----------cH---HH-------HHHHHHHhC---------------CcEEEeecCCCCChhHHhhhhc
Q psy785           76 ----------GK---EQ-------GASLARAFA---------------CTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        76 ----------~~---~~-------~~~~~~~~~---------------~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                                ..   +.       ......+.+               ++++++||++|.|+.++++++.
T Consensus       144 ~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~  213 (594)
T 1g7s_A          144 RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLM  213 (594)
T ss_dssp             CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHH
T ss_pred             CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHH
Confidence                      00   00       011111112               2799999999999999999875

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.68  E-value=8.4e-17  Score=106.39  Aligned_cols=103  Identities=5%  Similarity=-0.103  Sum_probs=74.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcE-EEEee-CCCCCCcccccH--
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM-VLVGN-KCDLEEERVVGK--   77 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~n-K~D~~~~~~~~~--   77 (112)
                      +.||||||+++|.......++.+|++++|+| +. ........|+..+..    .++|. ++++| |+|+ +......  
T Consensus        62 i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~  134 (370)
T 2elf_A           62 MVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-GLDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELK  134 (370)
T ss_dssp             EEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-CCCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHH
T ss_pred             EEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-CCcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHH
Confidence            6899999999998777778899999999999 43 334444555555443    35777 88999 9999 4332211  


Q ss_pred             HHHHHHHHHh---CCcEEE--eecCC---CCChhHHhhhhcc
Q psy785           78 EQGASLARAF---ACTFLE--TSAKA---KVNSWLCVECTND  111 (112)
Q Consensus        78 ~~~~~~~~~~---~~~~~~--~Sa~~---~~~v~~~~~~l~~  111 (112)
                      ++..++.+..   .+++++  +||++   +.|++++++.+.+
T Consensus       135 ~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~  176 (370)
T 2elf_A          135 AKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINE  176 (370)
T ss_dssp             HHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHh
Confidence            3344444433   368999  99999   9999999988753

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.67  E-value=1.8e-16  Score=106.80  Aligned_cols=99  Identities=18%  Similarity=0.207  Sum_probs=71.2

Q ss_pred             ceEEeCCCccc---------chhhHHhhcccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQ---------FTAMRDLYMKNGQGFILVYSITAQSTFN--DLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~---------~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      +++|||||++.         +...+..+++++|++++|+|.++..+..  .+..|+..       .++|+++|+||+|+.
T Consensus        51 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~-------~~~p~ilv~NK~D~~  123 (439)
T 1mky_A           51 FKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRK-------STVDTILVANKAENL  123 (439)
T ss_dssp             EEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHH-------HTCCEEEEEESCCSH
T ss_pred             EEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-------cCCCEEEEEeCCCCc
Confidence            68999999774         2445677899999999999998754433  23334322       358999999999985


Q ss_pred             CcccccHHHH-HHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           71 EERVVGKEQG-ASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        71 ~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +.  . .... .++. .+++ +++++||++|.|+.++++++.+
T Consensus       124 ~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~  162 (439)
T 1mky_A          124 RE--F-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIK  162 (439)
T ss_dssp             HH--H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHH
T ss_pred             cc--c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHH
Confidence            31  1 1222 3333 4577 7999999999999999998753

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.67  E-value=1.5e-16  Score=106.21  Aligned_cols=95  Identities=17%  Similarity=0.143  Sum_probs=70.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCcccc---cH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERVV---GK   77 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~   77 (112)
                      +.||||||+++|...+...++++|++++|+|+++....+ ...|+..+..    .++| +++++||+|+.+....   ..
T Consensus        77 ~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~  151 (405)
T 2c78_A           77 YSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVE  151 (405)
T ss_dssp             EEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHH
T ss_pred             EEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHH
Confidence            689999999999888888899999999999998764333 3445544443    3578 8899999999742211   12


Q ss_pred             HHHHHHHHHhC-----CcEEEeecCCCCC
Q psy785           78 EQGASLARAFA-----CTFLETSAKAKVN  101 (112)
Q Consensus        78 ~~~~~~~~~~~-----~~~~~~Sa~~~~~  101 (112)
                      .+..++....+     .+++++||++|.|
T Consensus       152 ~~~~~~l~~~~~~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          152 MEVRDLLNQYEFPGDEVPVIRGSALLALE  180 (405)
T ss_dssp             HHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred             HHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence            24455566555     5899999999987

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.66  E-value=2.3e-16  Score=96.49  Aligned_cols=103  Identities=11%  Similarity=-0.001  Sum_probs=66.6

Q ss_pred             CCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHH---HHhhcC-CCCCcEEEEeeCC-CCCCcccccHHHHH
Q psy785            7 TAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQ---ILRVKD-TDDVPMVLVGNKC-DLEEERVVGKEQGA   81 (112)
Q Consensus         7 t~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~---i~~~~~-~~~~p~ivv~nK~-D~~~~~~~~~~~~~   81 (112)
                      .+||++++.+|+.|++++|++|+|+|.++.+-++ .+.-+.+   +..... ..+.|++|++||. |++.  ..+..++.
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~  185 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA  185 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHH
Confidence            3489999999999999999999999999875433 2222222   222221 2578999999995 7753  33444333


Q ss_pred             HHHH----HhCCcEEEeecCCCCChhHHhhhhccC
Q psy785           82 SLAR----AFACTFLETSAKAKVNSWLCVECTNDQ  112 (112)
Q Consensus        82 ~~~~----~~~~~~~~~Sa~~~~~v~~~~~~l~~~  112 (112)
                      +...    ...+.++.|||++|.|+.+.++||.++
T Consensus       186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~  220 (227)
T 3l82_B          186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEE  220 (227)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTT
T ss_pred             HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHH
Confidence            2211    235689999999999999999999763

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.66  E-value=2.5e-16  Score=104.97  Aligned_cols=104  Identities=15%  Similarity=0.085  Sum_probs=75.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCccc---ccH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERV---VGK   77 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~   77 (112)
                      +.||||||+++|...+...++.+|++++|+|+++....+....| ..+..    .++| +++++||+|+.+...   ...
T Consensus        68 ~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~  142 (397)
T 1d2e_A           68 YAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ----IGVEHVVVYVNKADAVQDSEMVELVE  142 (397)
T ss_dssp             EEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCCEEEEEECGGGCSCHHHHHHHH
T ss_pred             EEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH----cCCCeEEEEEECcccCCCHHHHHHHH
Confidence            68999999999988888889999999999999885433333333 33332    3578 689999999974221   112


Q ss_pred             HHHHHHHHHhC-----CcEEEeecCCCCC----------hhHHhhhhc
Q psy785           78 EQGASLARAFA-----CTFLETSAKAKVN----------SWLCVECTN  110 (112)
Q Consensus        78 ~~~~~~~~~~~-----~~~~~~Sa~~~~~----------v~~~~~~l~  110 (112)
                      .+..++.+..+     ++++++||++|.|          +.++++.+.
T Consensus       143 ~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~  190 (397)
T 1d2e_A          143 LEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVD  190 (397)
T ss_dssp             HHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHH
Confidence            34555666655     5899999999764          788888764

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.66  E-value=5.1e-16  Score=104.66  Aligned_cols=103  Identities=17%  Similarity=0.109  Sum_probs=70.5

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhh---HH---HHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCcc
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQST---FN---DLSDLREQILRVKDTDDVP-MVLVGNKCDLEEER   73 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~   73 (112)
                      ++.||||||+++|...+...++++|++++|+|+++...   ++   .....+..+..    .++| +++++||+|+....
T Consensus        96 ~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~~~  171 (439)
T 3j2k_7           96 HFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPTVN  171 (439)
T ss_pred             EEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCcccc
Confidence            37899999999999888889999999999999987531   11   11112222222    3466 89999999985311


Q ss_pred             ------cccHHHHHHHHHHhC------CcEEEeecCCCCChhHHhh
Q psy785           74 ------VVGKEQGASLARAFA------CTFLETSAKAKVNSWLCVE  107 (112)
Q Consensus        74 ------~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~~~  107 (112)
                            ....++...+.+..+      ++++++||++|.|+.++.+
T Consensus       172 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          172 WSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence                  111223334444444      4799999999999998554

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.66  E-value=9.5e-17  Score=108.08  Aligned_cols=101  Identities=19%  Similarity=0.187  Sum_probs=68.1

Q ss_pred             CceEEeCCCcc--------cchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785            1 MLEILDTAGTE--------QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE   72 (112)
Q Consensus         1 ~~~i~Dt~g~~--------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~   72 (112)
                      .+++|||||++        .+...+..+++++|++++|+|+.+..+..+  .|+..+.+   ..++|+++|+||+|+.+.
T Consensus        52 ~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~---~~~~pvilv~NK~D~~~~  126 (436)
T 2hjg_A           52 DFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILY---RTKKPVVLAVNKLDNTEM  126 (436)
T ss_dssp             CCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHT---TCCSCEEEEEECCCC---
T ss_pred             eEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHH---HcCCCEEEEEECccCccc
Confidence            37899999986        566677888999999999999987655443  33333333   256899999999998643


Q ss_pred             ccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           73 RVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        73 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ...    ..++. ..++ +++++||++|.|+.++++++.+
T Consensus       127 ~~~----~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~  161 (436)
T 2hjg_A          127 RAN----IYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAE  161 (436)
T ss_dssp             --C----CCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHH
T ss_pred             hhh----HHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHH
Confidence            211    11122 3466 8999999999999999998764

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.65  E-value=2.1e-17  Score=113.48  Aligned_cols=105  Identities=25%  Similarity=0.260  Sum_probs=75.3

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc-ccHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV-VGKEQ   79 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~   79 (112)
                      .+.||||||+++|..++...++.+|++++|+|+++....+....| ..+..    .++|+++++||+|+.+... .....
T Consensus        53 ~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l-~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~  127 (537)
T 3izy_P           53 KITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESI-QHAKD----AHVPIVLAINKCDKAEADPEKVKKE  127 (537)
T ss_dssp             CCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHH-HHHHT----TTCCEEECCBSGGGTTTSCCSSSSH
T ss_pred             EEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHH-HHHHH----cCCcEEEEEecccccccchHHHHHH
Confidence            378999999999999999999999999999999886544443333 22222    4689999999999864221 11111


Q ss_pred             HHHH---HHHh--CCcEEEeecCCCCChhHHhhhhc
Q psy785           80 GASL---ARAF--ACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        80 ~~~~---~~~~--~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      ....   +..+  .++++++||++|.|++++++.+.
T Consensus       128 l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~  163 (537)
T 3izy_P          128 LLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATI  163 (537)
T ss_dssp             HHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHH
T ss_pred             HHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHH
Confidence            1111   1112  24899999999999999999875

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.64  E-value=2.1e-16  Score=107.05  Aligned_cols=99  Identities=21%  Similarity=0.216  Sum_probs=63.8

Q ss_pred             ceEEeCCCcccchhhHH--------hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQFTAMRD--------LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~   73 (112)
                      +.+|||||+.++...+.        .+++++|++++|+|.+++.+... ..|+..+.      ..|+++|+||+|+.+..
T Consensus       274 v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~------~~piivV~NK~Dl~~~~  346 (462)
T 3geh_A          274 VQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQVK------HRPLILVMNKIDLVEKQ  346 (462)
T ss_dssp             EEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHT------TSCEEEEEECTTSSCGG
T ss_pred             EEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhcc------CCcEEEEEECCCCCcch
Confidence            67999999876544333        35789999999999998766544 34544442      36999999999997644


Q ss_pred             cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ...  ...++.  .+.+++++||++|.|++++++++.+
T Consensus       347 ~~~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~  380 (462)
T 3geh_A          347 LIT--SLEYPE--NITQIVHTAAAQKQGIDSLETAILE  380 (462)
T ss_dssp             GST--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred             hhH--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            332  111111  3568999999999999999998764

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.64  E-value=5e-16  Score=105.18  Aligned_cols=101  Identities=12%  Similarity=0.069  Sum_probs=70.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh---hHH---HHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCc-c
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS---TFN---DLSDLREQILRVKDTDDVP-MVLVGNKCDLEEE-R   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~-~   73 (112)
                      +.||||||+++|...+...++++|++++|+|+++..   +|+   ....++..+..    .++| +++++||+|+.+. .
T Consensus        87 ~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~~~~~  162 (458)
T 1f60_A           87 VTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVKWDE  162 (458)
T ss_dssp             EEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGTTCH
T ss_pred             EEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEccccccCCH
Confidence            689999999999988888999999999999998652   221   22222222222    3455 8999999999731 1


Q ss_pred             c---ccHHHHHHHHHHhC-----CcEEEeecCCCCChhHHh
Q psy785           74 V---VGKEQGASLARAFA-----CTFLETSAKAKVNSWLCV  106 (112)
Q Consensus        74 ~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~  106 (112)
                      .   ....+...+....+     ++++++||++|.|+.++.
T Consensus       163 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~  203 (458)
T 1f60_A          163 SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT  203 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred             HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccc
Confidence            1   11233445555555     589999999999987653

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.64  E-value=1.1e-16  Score=108.50  Aligned_cols=104  Identities=19%  Similarity=0.149  Sum_probs=61.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh---hHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCcc----
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS---TFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEER----   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~----   73 (112)
                      +.||||||+++|...+...++.+|++++|+|+++..   +|+....|...+... ...++| +++++||+|+.+..    
T Consensus       123 ~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~-~~~~vp~iivviNK~Dl~~~~~~~~  201 (467)
T 1r5b_A          123 FSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RTQGINHLVVVINKMDEPSVQWSEE  201 (467)
T ss_dssp             EEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HHTTCSSEEEEEECTTSTTCSSCHH
T ss_pred             EEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH-HHcCCCEEEEEEECccCCCccccHH
Confidence            689999999999888888899999999999998752   332111122221111 114577 99999999995311    


Q ss_pred             --cccHHHHHHHHHHh-C------CcEEEeecCCCCChhHHh
Q psy785           74 --VVGKEQGASLARAF-A------CTFLETSAKAKVNSWLCV  106 (112)
Q Consensus        74 --~~~~~~~~~~~~~~-~------~~~~~~Sa~~~~~v~~~~  106 (112)
                        .....+...+.... +      ++++++||++|.|+.+++
T Consensus       202 ~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          202 RYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             HHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence              11123345555555 3      569999999999998876

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.64  E-value=4.8e-16  Score=100.30  Aligned_cols=104  Identities=18%  Similarity=0.101  Sum_probs=72.3

Q ss_pred             ceEEeCCCcc-cc--------hhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785            2 LEILDTAGTE-QF--------TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE   72 (112)
Q Consensus         2 ~~i~Dt~g~~-~~--------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~   72 (112)
                      +.+|||||+. ..        .......++.+|++++|+|.++ -  .....|+.....   ..+.|+++++||+|+...
T Consensus        58 i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~--~~~~~~i~~~l~---~~~~P~ilvlNK~D~~~~  131 (301)
T 1ega_A           58 AIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-W--TPDDEMVLNKLR---EGKAPVILAVNKVDNVQE  131 (301)
T ss_dssp             EEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-C--CHHHHHHHHHHH---SSSSCEEEEEESTTTCCC
T ss_pred             EEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-C--CHHHHHHHHHHH---hcCCCEEEEEECcccCcc
Confidence            6799999987 32        2223456789999999999976 2  222234333322   246899999999998752


Q ss_pred             ccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           73 RVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        73 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +....+....+...+++ +++++||++|.|++++++.+.+
T Consensus       132 ~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~  171 (301)
T 1ega_A          132 KADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRK  171 (301)
T ss_dssp             HHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHH
Confidence            22223344455555676 7999999999999999998764

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.63  E-value=3.6e-16  Score=108.96  Aligned_cols=101  Identities=12%  Similarity=0.081  Sum_probs=68.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh---hH---HHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS---TF---NDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV   75 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~   75 (112)
                      +.||||||+++|...+...++++|++++|+|+++..   ++   ......+..+..   ....|+++|+||+|+.+....
T Consensus       247 ~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~---lgi~~iIVVvNKiDl~~~~~~  323 (611)
T 3izq_1          247 FTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS---LGIHNLIIAMNKMDNVDWSQQ  323 (611)
T ss_dssp             EEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT---TTCCEEEEEEECTTTTTTCHH
T ss_pred             EEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH---cCCCeEEEEEecccccchhHH
Confidence            689999999999998889999999999999998642   11   011111111111   122459999999999753221


Q ss_pred             c----HHHHHHHHHHhC-----CcEEEeecCCCCChhHH
Q psy785           76 G----KEQGASLARAFA-----CTFLETSAKAKVNSWLC  105 (112)
Q Consensus        76 ~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~  105 (112)
                      .    ......+....+     ++++++||++|.|+.++
T Consensus       324 ~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          324 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            1    222333444444     58999999999999876

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.63  E-value=5.4e-17  Score=110.64  Aligned_cols=103  Identities=27%  Similarity=0.301  Sum_probs=73.1

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc--cc
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER--VV   75 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~--~~   75 (112)
                      .+.||||||+++|..++...++.+|++++|+|+++   +.+.+.+    ..+..    .++|+++++||+|+.+..  .+
T Consensus        52 ~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l----~~~~~----~~vPiIVviNKiDl~~~~~~~v  123 (501)
T 1zo1_I           52 MITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI----QHAKA----AQVPVVVAVNKIDKPEADPDRV  123 (501)
T ss_dssp             CCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHH----HHHHH----TTCCEEEEEECSSSSTTCCCCT
T ss_pred             EEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHH----HHHHh----cCceEEEEEEeccccccCHHHH
Confidence            47899999999999888888999999999999987   3344332    22222    468999999999986421  11


Q ss_pred             cHH--HHHHHHHHhC--CcEEEeecCCCCChhHHhhhhcc
Q psy785           76 GKE--QGASLARAFA--CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        76 ~~~--~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..+  ....+...++  ++++++||++|.|++++++.+..
T Consensus       124 ~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          124 KNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             TCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred             HHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence            000  0000112222  68999999999999999998763

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.62  E-value=2e-15  Score=91.08  Aligned_cols=74  Identities=18%  Similarity=0.328  Sum_probs=61.2

Q ss_pred             CceEEeCCCcccchhhHHhhccc----CCEEEEEEeCC-ChhhHHHHHHHHHHHHhhcC---CCCCcEEEEeeCCCCCCc
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKN----GQGFILVYSIT-AQSTFNDLSDLREQILRVKD---TDDVPMVLVGNKCDLEEE   72 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~----~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~D~~~~   72 (112)
                      .+.+|||||++.+...+..++.+    +|++++|+|++ +..++..+..|+..+.....   ..+.|+++|+||+|+.+.
T Consensus        92 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  171 (193)
T 2ged_A           92 GVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  171 (193)
T ss_dssp             TCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             eEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence            36899999999987777777765    89999999999 88999998888888765432   257999999999999765


Q ss_pred             cc
Q psy785           73 RV   74 (112)
Q Consensus        73 ~~   74 (112)
                      ..
T Consensus       172 ~~  173 (193)
T 2ged_A          172 RP  173 (193)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.61  E-value=3.9e-16  Score=100.11  Aligned_cols=106  Identities=14%  Similarity=0.080  Sum_probs=71.1

Q ss_pred             CceEEeCCCcc-------------cchhhHHhhcccCCEEE-EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeC
Q psy785            1 MLEILDTAGTE-------------QFTAMRDLYMKNGQGFI-LVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNK   66 (112)
Q Consensus         1 ~~~i~Dt~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK   66 (112)
                      .+.||||||+.             .+..++..++++++.++ +|+|.++..+......|...+.    ..+.|+++|+||
T Consensus       126 ~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~----~~~~~~i~V~NK  201 (299)
T 2aka_B          126 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGVITK  201 (299)
T ss_dssp             SEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC----TTCSSEEEEEEC
T ss_pred             CceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC----CCCCeEEEEEEc
Confidence            36899999964             34567778888998777 6899987544333333444432    256899999999


Q ss_pred             CCCCCcccccHHHHHHHHHH--hCC-cEEEeecCCCCChhHHhhhhc
Q psy785           67 CDLEEERVVGKEQGASLARA--FAC-TFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        67 ~D~~~~~~~~~~~~~~~~~~--~~~-~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      +|+.+......+........  .++ +++++||++|.|++++++++.
T Consensus       202 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~  248 (299)
T 2aka_B          202 LDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALA  248 (299)
T ss_dssp             GGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHH
T ss_pred             cccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHH
Confidence            99975443222222110001  133 688999999999999998864

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.60  E-value=2.2e-15  Score=110.26  Aligned_cols=105  Identities=15%  Similarity=0.128  Sum_probs=76.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCcccc---cH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERVV---GK   77 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~   77 (112)
                      +.||||||+++|.......++.+|++++|+|+++....+ ...++..+..    .++| +++++||+|+.+....   ..
T Consensus       361 I~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~  435 (1289)
T 3avx_A          361 YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVE  435 (1289)
T ss_dssp             EEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHH
T ss_pred             EEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHH
Confidence            689999999999888888999999999999998753322 2334444433    3578 7899999999752221   12


Q ss_pred             HHHHHHHHHhC-----CcEEEeecCCC--------CChhHHhhhhcc
Q psy785           78 EQGASLARAFA-----CTFLETSAKAK--------VNSWLCVECTND  111 (112)
Q Consensus        78 ~~~~~~~~~~~-----~~~~~~Sa~~~--------~~v~~~~~~l~~  111 (112)
                      .+..++....+     ++++++||++|        .|+.++++.+.+
T Consensus       436 eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~  482 (1289)
T 3avx_A          436 MEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDS  482 (1289)
T ss_dssp             HHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence            34555666655     58999999999        468888887653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.60  E-value=9e-15  Score=98.57  Aligned_cols=104  Identities=20%  Similarity=0.118  Sum_probs=69.2

Q ss_pred             ceEEeCCCcccchhh------------HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785            2 LEILDTAGTEQFTAM------------RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL   69 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~   69 (112)
                      +.+|||||+.++...            ...+++.+|++++++|.++..+.+.. .+...+..    .++|+++++||+|+
T Consensus       230 ~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~----~~~~~ilv~NK~Dl  304 (439)
T 1mky_A          230 YVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER----RGRASVVVFNKWDL  304 (439)
T ss_dssp             EEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGG
T ss_pred             EEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECccC
Confidence            579999998543321            13467889999999999876555442 22222222    56899999999999


Q ss_pred             CCcccccHHHHHH-HHHH----hCCcEEEeecCCCCChhHHhhhhc
Q psy785           70 EEERVVGKEQGAS-LARA----FACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        70 ~~~~~~~~~~~~~-~~~~----~~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      .+.+....++..+ +.+.    .+.+++++||++|.|++++|+.+.
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~  350 (439)
T 1mky_A          305 VVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMN  350 (439)
T ss_dssp             STTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHH
Confidence            7644433333322 2222    246899999999999999999875

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.58  E-value=4.9e-15  Score=94.50  Aligned_cols=102  Identities=11%  Similarity=-0.005  Sum_probs=70.5

Q ss_pred             CCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHH---HHHhhc-CCCCCcEEEEeeC-CCCCCcccccHHHHH
Q psy785            7 TAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLRE---QILRVK-DTDDVPMVLVGNK-CDLEEERVVGKEQGA   81 (112)
Q Consensus         7 t~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~---~i~~~~-~~~~~p~ivv~nK-~D~~~~~~~~~~~~~   81 (112)
                      .+||++++.+|+.|++++|++|+|+|.++.+.++ ...-+.   .+.... ...+.|++|++|| .|+..  ..+..+..
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~  270 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA  270 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHH
Confidence            4689999999999999999999999999986543 222122   222221 1257899999996 68853  33343333


Q ss_pred             HHHH----HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLAR----AFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~----~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +...    ...+.+..|||++|.|+.+.++||.+
T Consensus       271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~  304 (312)
T 3l2o_B          271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILE  304 (312)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHH
T ss_pred             HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHH
Confidence            2211    13568999999999999999999874

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.57  E-value=4.8e-14  Score=93.10  Aligned_cols=108  Identities=19%  Similarity=0.166  Sum_probs=73.9

Q ss_pred             ceEEeCCCcc---------cchhhHHhhcccCCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTE---------QFTAMRDLYMKNGQGFILVYSITAQS--TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      +.+|||+|..         .+...+ ..+..+|++++|+|++++.  +.+.+..|...+... ...+.|+++|+||+|+.
T Consensus       228 v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-~~~~~p~ilV~NK~Dl~  305 (364)
T 2qtf_A          228 IMLVDTVGFIRGIPPQIVDAFFVTL-SEAKYSDALILVIDSTFSENLLIETLQSSFEILREI-GVSGKPILVTLNKIDKI  305 (364)
T ss_dssp             EEEEECCCBCSSCCGGGHHHHHHHH-HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-TCCSCCEEEEEECGGGC
T ss_pred             EEEEeCCCchhcCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh-CcCCCCEEEEEECCCCC
Confidence            5799999962         233333 3578999999999998876  555555555544432 33568999999999986


Q ss_pred             Cccccc-HHHHHHHHHHh---CCcEEEeecCCCCChhHHhhhhcc
Q psy785           71 EERVVG-KEQGASLARAF---ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        71 ~~~~~~-~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +..... ......++...   +.+++++||+++.|++++++.+.+
T Consensus       306 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~  350 (364)
T 2qtf_A          306 NGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQ  350 (364)
T ss_dssp             CSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHH
Confidence            533100 11222334554   237899999999999999998753

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.55  E-value=4.5e-14  Score=99.35  Aligned_cols=64  Identities=17%  Similarity=0.134  Sum_probs=51.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      +++|||||+++|...+..+++.+|++++|+|+++....... .++..+..    .++|+++++||+|+.
T Consensus        76 ~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~----~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           76 VFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER----LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             EEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH----TTCCEEEEEECGGGC
T ss_pred             EEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH----ccCCEEEEecCCchh
Confidence            68999999999998899999999999999998765443332 34444443    468999999999986

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.55  E-value=6.7e-15  Score=99.60  Aligned_cols=101  Identities=18%  Similarity=0.167  Sum_probs=69.1

Q ss_pred             CceEEeCCC--------cccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785            1 MLEILDTAG--------TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE   72 (112)
Q Consensus         1 ~~~i~Dt~g--------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~   72 (112)
                      .+++|||||        ++.+...+..+++++|++++|+|..+..+..  ..|+....+.   .++|+++|+||+|+.+.
T Consensus        72 ~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~--d~~l~~~l~~---~~~pvilV~NK~D~~~~  146 (456)
T 4dcu_A           72 DFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDNTEM  146 (456)
T ss_dssp             CCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH--HHHHHHHHTT---CCSCEEEEEECC-----
T ss_pred             eEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH--HHHHHHHHHH---cCCCEEEEEECccchhh
Confidence            378999999        7778888888999999999999987643222  2343333332   57899999999998632


Q ss_pred             ccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           73 RVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        73 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..    ...++ ...++ +.+++||++|.|+.++++.+.+
T Consensus       147 ~~----~~~e~-~~lg~~~~~~iSA~~g~gv~~L~~~i~~  181 (456)
T 4dcu_A          147 RA----NIYDF-YSLGFGEPYPISGTHGLGLGDLLDAVAE  181 (456)
T ss_dssp             --------CCS-GGGSSSSEEECCTTTCTTHHHHHHHHHT
T ss_pred             hh----hHHHH-HHcCCCceEEeecccccchHHHHHHHHh
Confidence            21    11111 12344 6789999999999999998754

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.52  E-value=1.9e-14  Score=90.84  Aligned_cols=107  Identities=14%  Similarity=0.119  Sum_probs=67.1

Q ss_pred             ceEEeCCCcccch-----------hhHHhhcccCCEEEEEEeCCChhhH-HHHHHHHHHHHhhcCCCCCcEEEEee-CCC
Q psy785            2 LEILDTAGTEQFT-----------AMRDLYMKNGQGFILVYSITAQSTF-NDLSDLREQILRVKDTDDVPMVLVGN-KCD   68 (112)
Q Consensus         2 ~~i~Dt~g~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~p~ivv~n-K~D   68 (112)
                      +.||||||+.++.           .....+++++|++++|+|+++.... ..+..|+..+...  ....|.++++| |+|
T Consensus        73 i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~D  150 (260)
T 2xtp_A           73 IVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKED  150 (260)
T ss_dssp             EEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGG
T ss_pred             EEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccc
Confidence            6899999987642           2233467899999999999863222 2233344333221  11357676666 999


Q ss_pred             CCCcccccH-------HHHHHHHHHhCCc---E--EEeecCCCCChhHHhhhhcc
Q psy785           69 LEEERVVGK-------EQGASLARAFACT---F--LETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        69 ~~~~~~~~~-------~~~~~~~~~~~~~---~--~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +.+. ....       ..+..+....+..   +  +++||++|.|++++|+.+.+
T Consensus       151 l~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~  204 (260)
T 2xtp_A          151 LNGG-SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIED  204 (260)
T ss_dssp             GTTC-CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCc-cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHH
Confidence            9743 2211       2233455554432   2  78999999999999998753

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.50  E-value=1.1e-13  Score=95.13  Aligned_cols=101  Identities=15%  Similarity=0.143  Sum_probs=72.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||||+++|...+..+++.+|++++|+|+++......     ..+.......++|+++++||+|+.....  .+...
T Consensus        84 i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-----~~~~~~~~~~~ipiivviNK~Dl~~~~~--~~~~~  156 (529)
T 2h5e_A           84 VNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-----RKLMEVTRLRDTPILTFMNKLDRDIRDP--MELLD  156 (529)
T ss_dssp             EEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-----HHHHHHHTTTTCCEEEEEECTTSCCSCH--HHHHH
T ss_pred             EEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-----HHHHHHHHHcCCCEEEEEcCcCCccccH--HHHHH
Confidence            6899999999998888889999999999999987543222     2222223335789999999999865332  23344


Q ss_pred             HHHHHhCCc-----EEEeecCCCCChhHHhhhh
Q psy785           82 SLARAFACT-----FLETSAKAKVNSWLCVECT  109 (112)
Q Consensus        82 ~~~~~~~~~-----~~~~Sa~~~~~v~~~~~~l  109 (112)
                      ++...++.+     +..+|++++.|+.+++...
T Consensus       157 ~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~  189 (529)
T 2h5e_A          157 EVENELKIGCAPITWPIGCGKLFKGVYHLYKDE  189 (529)
T ss_dssp             HHHHHHCCEEEESEEEESCGGGCCEEEETTTTE
T ss_pred             HHHHHhCCCccceecceecccCcceeeehhhhh
Confidence            555666653     3346899999998887643

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.49  E-value=1.7e-15  Score=99.94  Aligned_cols=102  Identities=14%  Similarity=0.107  Sum_probs=51.8

Q ss_pred             ceEEeCCCc-------ccchhhHH-------hhcccCC-------------EEEEEEeCCChhhHHHHH-HHHHHHHhhc
Q psy785            2 LEILDTAGT-------EQFTAMRD-------LYMKNGQ-------------GFILVYSITAQSTFNDLS-DLREQILRVK   53 (112)
Q Consensus         2 ~~i~Dt~g~-------~~~~~~~~-------~~~~~~d-------------~~i~v~d~~~~~s~~~~~-~~~~~i~~~~   53 (112)
                      +.+|||||+       +.+..++.       .++++++             +++++++.+ ..++..+. .|+..+    
T Consensus        97 l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----  171 (361)
T 2qag_A           97 LTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----  171 (361)
T ss_dssp             EEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----
T ss_pred             eEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----
Confidence            689999998       66666665       5655443             455555432 23444333 343332    


Q ss_pred             CCCCCcEEEEeeCCCCCCcccccH--HHHHHHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785           54 DTDDVPMVLVGNKCDLEEERVVGK--EQGASLARAFACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        54 ~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                       ..++|+++|+||+|+...+.+..  +.+.+++...+++++++||+++.+ ++.|..+.
T Consensus       172 -~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~  228 (361)
T 2qag_A          172 -HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQT  228 (361)
T ss_dssp             -CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHH
T ss_pred             -ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHH
Confidence             25689999999999976554433  345556666788999999999998 66665543

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.49  E-value=6.2e-14  Score=87.51  Aligned_cols=107  Identities=17%  Similarity=0.155  Sum_probs=67.7

Q ss_pred             ceEEeCCCc-----------ccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCCC
Q psy785            2 LEILDTAGT-----------EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVPMVLVGNKCDL   69 (112)
Q Consensus         2 ~~i~Dt~g~-----------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~   69 (112)
                      +.+|||||.           +.+...+..+++++|++++|+|++.....+  ..|+..+.+.... ...|+++|+||+|+
T Consensus        80 i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~--~~~l~~~~~~~~~~~~~~~iiv~nK~D~  157 (239)
T 3lxx_A           80 LVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEE--HKATEKILKMFGERARSFMILIFTRKDD  157 (239)
T ss_dssp             EEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHH--HHHHHHHHHHHHHHHGGGEEEEEECGGG
T ss_pred             EEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHH--HHHHHHHHHHhhhhccceEEEEEeCCcc
Confidence            689999993           344455556678899999999987644321  2233333221111 23699999999998


Q ss_pred             CCccccc------HHHHHHHHHHhCCcEEEeecCCC-----CChhHHhhhhc
Q psy785           70 EEERVVG------KEQGASLARAFACTFLETSAKAK-----VNSWLCVECTN  110 (112)
Q Consensus        70 ~~~~~~~------~~~~~~~~~~~~~~~~~~Sa~~~-----~~v~~~~~~l~  110 (112)
                      .+...+.      .+.++.+.+..+..++.+++..+     .++.++++.+.
T Consensus       158 ~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~  209 (239)
T 3lxx_A          158 LGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQ  209 (239)
T ss_dssp             C------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHH
Confidence            6544332      23466777778888887776643     67888887653

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.49  E-value=2.7e-13  Score=95.72  Aligned_cols=65  Identities=25%  Similarity=0.308  Sum_probs=54.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~   71 (112)
                      +.||||||+.+|...+..+++.+|++++|+|+++..+.+....|.. +..    .++|+++++||+|+..
T Consensus        79 i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           79 INIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK----YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             EEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTT
T ss_pred             EEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEECCCccc
Confidence            6899999999999999999999999999999998777776666643 333    4689999999999864

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.48  E-value=5e-14  Score=89.68  Aligned_cols=105  Identities=14%  Similarity=0.095  Sum_probs=57.4

Q ss_pred             ceEEeCCCcc-------cchhhH-------Hhhcc-------------cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC
Q psy785            2 LEILDTAGTE-------QFTAMR-------DLYMK-------------NGQGFILVYSITAQSTFNDLSDLREQILRVKD   54 (112)
Q Consensus         2 ~~i~Dt~g~~-------~~~~~~-------~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~   54 (112)
                      +.+|||||..       .+..+.       ..++.             ++|+++++++.+.......-..++..+..   
T Consensus        67 l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---  143 (274)
T 3t5d_A           67 LTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---  143 (274)
T ss_dssp             EEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---
T ss_pred             EEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---
Confidence            6899999973       233333       33333             37899999987653211111223333322   


Q ss_pred             CCCCcEEEEeeCCCCCCccccc--HHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           55 TDDVPMVLVGNKCDLEEERVVG--KEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        55 ~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                        .+|+++|+||+|+.......  .+...+.....+++++++||+++.|+.++++++.+
T Consensus       144 --~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~  200 (274)
T 3t5d_A          144 --KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD  200 (274)
T ss_dssp             --TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHH
T ss_pred             --cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhc
Confidence              68999999999986433321  12334445566889999999999999999988754

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.48  E-value=4.7e-16  Score=108.07  Aligned_cols=95  Identities=19%  Similarity=0.100  Sum_probs=56.7

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCCh----------hhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCC
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQ----------STFNDLSDLREQILRVKDTDDVP-MVLVGNKCDL   69 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~   69 (112)
                      .+.||||||+++|...+...++.+|++++|+|+++.          .+.+.    +..+..    .++| +++|+||+|+
T Consensus       256 ~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~----l~~~~~----lgip~iIvviNKiDl  327 (592)
T 3mca_A          256 IYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREH----AYLLRA----LGISEIVVSVNKLDL  327 (592)
T ss_dssp             ---CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHH----HHHHHH----SSCCCEEEEEECGGG
T ss_pred             EEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHH----HHHHHH----cCCCeEEEEEecccc
Confidence            368999999999988777888999999999999753          22222    112222    3455 8999999998


Q ss_pred             CCccc-c---cHHHHHHHH-HHhCC-----cEEEeecCCCCChh
Q psy785           70 EEERV-V---GKEQGASLA-RAFAC-----TFLETSAKAKVNSW  103 (112)
Q Consensus        70 ~~~~~-~---~~~~~~~~~-~~~~~-----~~~~~Sa~~~~~v~  103 (112)
                      .+... .   ...+...+. ...++     +++++||++|.|+.
T Consensus       328 ~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          328 MSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             GTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             ccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            64211 1   112233333 33344     79999999999998

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.47  E-value=1.2e-13  Score=97.51  Aligned_cols=105  Identities=15%  Similarity=0.200  Sum_probs=73.3

Q ss_pred             ceEEeCCCccc---chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHH
Q psy785            2 LEILDTAGTEQ---FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKE   78 (112)
Q Consensus         2 ~~i~Dt~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~   78 (112)
                      +.||||||...   ....+..+++++|++++|+|++++.+......|...+..    .+.|+++|+||+|+......+.+
T Consensus       176 l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~----~~~~iiiVlNK~Dl~~~~~~~~e  251 (695)
T 2j69_A          176 IEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG----RGLTVFFLVNAWDQVRESLIDPD  251 (695)
T ss_dssp             EEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT----SCCCEEEEEECGGGGGGGCSSTT
T ss_pred             eEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh----hCCCEEEEEECcccccccccChh
Confidence            68999999765   345666788999999999999988777666555444332    36789999999998643311110


Q ss_pred             ----------HHHHH----HH-H--------hCCcEEEeecC--------------CCCChhHHhhhhc
Q psy785           79 ----------QGASL----AR-A--------FACTFLETSAK--------------AKVNSWLCVECTN  110 (112)
Q Consensus        79 ----------~~~~~----~~-~--------~~~~~~~~Sa~--------------~~~~v~~~~~~l~  110 (112)
                                .....    .. .        ...+++++||+              ++.|+.++++.+.
T Consensus       252 e~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~  320 (695)
T 2j69_A          252 DVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLN  320 (695)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHH
Confidence                      11111    11 1        12379999999              9999999988765

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.47  E-value=1.8e-14  Score=94.83  Aligned_cols=103  Identities=18%  Similarity=0.149  Sum_probs=72.7

Q ss_pred             ceEEeCCCcccc-------------hhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785            2 LEILDTAGTEQF-------------TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD   68 (112)
Q Consensus         2 ~~i~Dt~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D   68 (112)
                      +.+|||||..++             ..+...+++++|++++++|.++.+...  ..|+..+... ...+.|+++|+||+|
T Consensus       138 l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~-~~~~~~~i~V~nK~D  214 (360)
T 3t34_A          138 LTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREV-DPSGDRTFGVLTKID  214 (360)
T ss_dssp             EEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHS-CTTCTTEEEEEECGG
T ss_pred             eEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHh-cccCCCEEEEEeCCc
Confidence            689999998876             667888899999999999876543222  1233333332 235689999999999


Q ss_pred             CCCcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhh
Q psy785           69 LEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVE  107 (112)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  107 (112)
                      +.+...............++.+++++|+.++.++++.+.
T Consensus       215 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~  253 (360)
T 3t34_A          215 LMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVD  253 (360)
T ss_dssp             GCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCC
T ss_pred             cCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCC
Confidence            976554444434333444577999999999988876544

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.45  E-value=1.2e-12  Score=92.69  Aligned_cols=66  Identities=26%  Similarity=0.283  Sum_probs=52.9

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE   71 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~   71 (112)
                      .++||||||+.+|...+...++.+|++++|+|+++....+....|. .+..    .++|+++++||+|+..
T Consensus        83 ~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~----~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           83 RINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK----YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             eEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH----cCCCEEEEEeCCCccc
Confidence            3689999999999988999999999999999998876555544443 2222    4689999999999753

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.45  E-value=4.6e-13  Score=89.71  Aligned_cols=107  Identities=17%  Similarity=0.098  Sum_probs=76.9

Q ss_pred             ceEEeCCCcccc----hhh---HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQF----TAM---RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~----~~~---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~~~~~   73 (112)
                      +.+|||||....    ..+   ....++.++.+++++|++ ..++..+..|..++..+... ...|.++++||+|+... 
T Consensus       207 ~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-  284 (416)
T 1udx_A          207 FTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-  284 (416)
T ss_dssp             EEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-
T ss_pred             EEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-
Confidence            679999997431    111   122356799999999998 66777777777766654321 35799999999998753 


Q ss_pred             cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                       .......+.....+++++++||+++.|++++++++.+
T Consensus       285 -~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~  321 (416)
T 1udx_A          285 -EAVKALADALAREGLAVLPVSALTGAGLPALKEALHA  321 (416)
T ss_dssp             -HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHH
Confidence             2233344455556789999999999999999998764

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.43  E-value=5.3e-13  Score=88.26  Aligned_cols=93  Identities=16%  Similarity=0.139  Sum_probs=71.4

Q ss_pred             cccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHH----HHH
Q psy785           10 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGAS----LAR   85 (112)
Q Consensus        10 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~   85 (112)
                      +++|.++++.++++++++++|+|++++.     ..|...+.+..  .++|+++|+||+|+.+.. ...+...+    .++
T Consensus        56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           56 DDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK  127 (368)
T ss_dssp             CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence            5678889999999999999999999864     34666665543  368999999999996533 22333333    355


Q ss_pred             HhCC---cEEEeecCCCCChhHHhhhhc
Q psy785           86 AFAC---TFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        86 ~~~~---~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      ..++   +++++||++|.|++++++.+.
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~  155 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIE  155 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhh
Confidence            5677   799999999999999998874

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.41  E-value=2.7e-12  Score=90.74  Aligned_cols=65  Identities=22%  Similarity=0.227  Sum_probs=54.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~   71 (112)
                      +.||||||+.+|...+..+++.+|++++|+|+++..+.+....|.. +..    .++|+++++||+|+..
T Consensus        77 i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~----~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           77 VNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT----YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             EEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTT
T ss_pred             EEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH----cCCCEEEEEECCCccc
Confidence            6899999999998888899999999999999998776666555543 333    4689999999999864

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.39  E-value=5.7e-13  Score=86.00  Aligned_cols=104  Identities=15%  Similarity=0.171  Sum_probs=62.5

Q ss_pred             ceEEeCCCccc-------------chhhHHhhcccCCEEEEEEeCCChhhH-HHHHHHHHHHHhhcCCCCCcEEEEeeCC
Q psy785            2 LEILDTAGTEQ-------------FTAMRDLYMKNGQGFILVYSITAQSTF-NDLSDLREQILRVKDTDDVPMVLVGNKC   67 (112)
Q Consensus         2 ~~i~Dt~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~p~ivv~nK~   67 (112)
                      +.||||||..+             +......+++++|++++|+|.++.... .....+...+.    ..+.|+++|+||+
T Consensus       133 ~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~----~~~~~~i~v~NK~  208 (315)
T 1jwy_B          133 LTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD----PEGKRTIGVITKL  208 (315)
T ss_dssp             EEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC----SSCSSEEEEEECT
T ss_pred             cEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC----CCCCcEEEEEcCc
Confidence            78999999753             455677789999999999997443211 11112222222    2568999999999


Q ss_pred             CCCCcccccHHHHHHHHHHhCCcEEEeecCC------CCChhHHhhhh
Q psy785           68 DLEEERVVGKEQGASLARAFACTFLETSAKA------KVNSWLCVECT  109 (112)
Q Consensus        68 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~~v~~~~~~l  109 (112)
                      |+.+......+.........+..++++|+.+      +.|+.++++.+
T Consensus       209 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~  256 (315)
T 1jwy_B          209 DLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSE  256 (315)
T ss_dssp             TSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHH
T ss_pred             ccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHH
Confidence            9975443222222210011224566666555      56777777664

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.37  E-value=1.4e-12  Score=82.09  Aligned_cols=104  Identities=13%  Similarity=0.016  Sum_probs=63.9

Q ss_pred             ceEEeCCCcccchhhHH------hhcccCCEEEEEEeCCChh---hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785            2 LEILDTAGTEQFTAMRD------LYMKNGQGFILVYSITAQS---TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE   72 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~   72 (112)
                      +.||||||+........      ..+.+ +++++++|.....   .+.....+......   ..+.|+++|+||+|+.+.
T Consensus       111 ~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~iv~NK~D~~~~  186 (262)
T 1yrb_A          111 YVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL---RLGATTIPALNKVDLLSE  186 (262)
T ss_dssp             EEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH---HHTSCEEEEECCGGGCCH
T ss_pred             EEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc---ccCCCeEEEEeccccccc
Confidence            67999999887543321      24466 8889999875432   22221111111111   135899999999998653


Q ss_pred             ccccHHHHHH----------------------------HHHHhC--CcEEEeecCCCCChhHHhhhhcc
Q psy785           73 RVVGKEQGAS----------------------------LARAFA--CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        73 ~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ...  +...+                            .+.+++  .+++++||+++.|++++++++.+
T Consensus       187 ~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~  253 (262)
T 1yrb_A          187 EEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYE  253 (262)
T ss_dssp             HHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHH
T ss_pred             ccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHH
Confidence            321  11111                            123333  48999999999999999998753

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.34  E-value=5.9e-13  Score=88.78  Aligned_cols=49  Identities=20%  Similarity=0.190  Sum_probs=33.5

Q ss_pred             CCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhh
Q psy785           57 DVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVE  107 (112)
Q Consensus        57 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  107 (112)
                      .+|+++++||+|+.. .. ......+.....+.+++++||+.+.++.++++
T Consensus       214 ~kP~i~v~NK~D~~~-~~-~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~  262 (397)
T 1wxq_A          214 NKPMVIAANKADAAS-DE-QIKRLVREEEKRGYIVIPTSAAAELTLRKAAK  262 (397)
T ss_dssp             HSCEEEEEECGGGSC-HH-HHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred             CCCEEEEEeCccccc-hH-HHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence            489999999999862 11 11222222222367899999999999987655

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.33  E-value=2.7e-12  Score=84.93  Aligned_cols=94  Identities=20%  Similarity=0.184  Sum_probs=69.8

Q ss_pred             CcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHH----H
Q psy785            9 GTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASL----A   84 (112)
Q Consensus         9 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~   84 (112)
                      .+++|.++.+.++++++++++|+|++++.+     .|...+.+..  .+.|+++|+||+|+.+.. ...+...++    +
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l--~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~  128 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA--ADNPILLVGNKADLLPRS-VKYPKLLRWMRRMA  128 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC--TTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh--CCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHH
Confidence            478899999989999999999999998763     3444444443  368999999999997532 223333333    4


Q ss_pred             HHhCC---cEEEeecCCCCChhHHhhhhc
Q psy785           85 RAFAC---TFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        85 ~~~~~---~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      +..|+   +++.+||++|.|++++++.+.
T Consensus       129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~  157 (369)
T 3ec1_A          129 EELGLCPVDVCLVSAAKGIGMAKVMEAIN  157 (369)
T ss_dssp             HTTTCCCSEEEECBTTTTBTHHHHHHHHH
T ss_pred             HHcCCCcccEEEEECCCCCCHHHHHHHHH
Confidence            55566   789999999999999998874

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.32  E-value=1.4e-12  Score=85.78  Aligned_cols=97  Identities=15%  Similarity=0.135  Sum_probs=64.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.||||||....   ....++.+|++++|+|.+..+..+.+.       .  ...+.|.++|+||+|+.+.... .....
T Consensus       174 ~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~-------~--~~~~~p~ivVlNK~Dl~~~~~~-~~~~~  240 (355)
T 3p32_A          174 VILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK-------K--GVLELADIVVVNKADGEHHKEA-RLAAR  240 (355)
T ss_dssp             EEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC-------T--TSGGGCSEEEEECCCGGGHHHH-HHHHH
T ss_pred             EEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH-------H--hHhhcCCEEEEECCCCcChhHH-HHHHH
Confidence            679999995432   223358999999999987655432221       1  1134699999999998643221 11112


Q ss_pred             HHHHH---h-------CCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARA---F-------ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~---~-------~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++...   .       +.+++++||++|.|++++++++.+
T Consensus       241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~  280 (355)
T 3p32_A          241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVER  280 (355)
T ss_dssp             HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHH
T ss_pred             HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHH
Confidence            22221   1       468999999999999999998753

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.31  E-value=2e-11  Score=74.35  Aligned_cols=103  Identities=13%  Similarity=0.105  Sum_probs=68.3

Q ss_pred             ceEEeCCCccc----------chhhHHhhc---ccCCEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCCcEEEEeeC
Q psy785            2 LEILDTAGTEQ----------FTAMRDLYM---KNGQGFILVYSITAQSTFND--LSDLREQILRVKDTDDVPMVLVGNK   66 (112)
Q Consensus         2 ~~i~Dt~g~~~----------~~~~~~~~~---~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~p~ivv~nK   66 (112)
                      +.+|||||...          +......++   +.++++++++|++.+.+...  +..|+   ..    .++|.++++||
T Consensus        74 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~----~~~~~~~v~nK  146 (210)
T 1pui_A           74 KRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD----SNIAVLVLLTK  146 (210)
T ss_dssp             EEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH----TTCCEEEEEEC
T ss_pred             EEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH----cCCCeEEEEec
Confidence            57999999742          233333344   57899999999987654432  22332   11    45899999999


Q ss_pred             CCCCCccc--ccHHHHHHHHHHhC--CcEEEeecCCCCChhHHhhhhcc
Q psy785           67 CDLEEERV--VGKEQGASLARAFA--CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        67 ~D~~~~~~--~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +|+.+...  .....+..++.+.+  +.++++||+++.|++++++.+.+
T Consensus       147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~  195 (210)
T 1pui_A          147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT  195 (210)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHH
T ss_pred             ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHH
Confidence            99865322  11233444444444  47889999999999999998753

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.29  E-value=4.2e-11  Score=82.76  Aligned_cols=65  Identities=17%  Similarity=0.186  Sum_probs=52.4

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      +++|+||||+.+|..-....++-+|++++|+|....-.-+...-|.. ..+    .++|+++++||+|..
T Consensus       101 ~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~-a~~----~~lp~i~fINK~Dr~  165 (548)
T 3vqt_A          101 VVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDV-CRM----RATPVMTFVNKMDRE  165 (548)
T ss_dssp             EEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHH-HHH----TTCCEEEEEECTTSC
T ss_pred             EEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHH-HHH----hCCceEEEEecccch
Confidence            37899999999999988889999999999999987654444444533 333    569999999999974

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.27  E-value=3.7e-13  Score=88.47  Aligned_cols=105  Identities=16%  Similarity=0.139  Sum_probs=63.4

Q ss_pred             ceEEeCCCcc-------------cchhhHHhhcccCCEEEEE-EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCC
Q psy785            2 LEILDTAGTE-------------QFTAMRDLYMKNGQGFILV-YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKC   67 (112)
Q Consensus         2 ~~i~Dt~g~~-------------~~~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~   67 (112)
                      +.||||||..             .+..+...++++++.++++ .+.+....-.....+...+    ...+.|+++|+||+
T Consensus       132 l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~----~~~~~~~i~V~NK~  207 (353)
T 2x2e_A          132 LTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEV----DPQGQRTIGVITKL  207 (353)
T ss_dssp             EEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHH----CTTCTTEEEEEECG
T ss_pred             cEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHh----CcCCCceEEEeccc
Confidence            7899999963             3455777777777666655 4544322111111233332    23578999999999


Q ss_pred             CCCCcccccHHHHHH--HHHHhCC-cEEEeecCCCCChhHHhhhhc
Q psy785           68 DLEEERVVGKEQGAS--LARAFAC-TFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        68 D~~~~~~~~~~~~~~--~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      |+.+...........  +....++ +++++||+++.|++++++.+.
T Consensus       208 Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~  253 (353)
T 2x2e_A          208 DLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALA  253 (353)
T ss_dssp             GGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHH
T ss_pred             cccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHH
Confidence            997543311211111  0011233 678899999999999998764

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.25  E-value=1.9e-12  Score=83.54  Aligned_cols=103  Identities=14%  Similarity=0.093  Sum_probs=55.5

Q ss_pred             ceEEeCCCc-------ccchhhHH-------hhccc-------------CCEEEEEEeCCChhhHHHHHHHHHHHHhhcC
Q psy785            2 LEILDTAGT-------EQFTAMRD-------LYMKN-------------GQGFILVYSITAQSTFNDLSDLREQILRVKD   54 (112)
Q Consensus         2 ~~i~Dt~g~-------~~~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~   54 (112)
                      +.+|||+|+       +.+..+..       .++++             +++++++.+++.. +++....  ..+.... 
T Consensus        78 ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~--~~l~~l~-  153 (301)
T 2qnr_A           78 LTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDV--AFMKAIH-  153 (301)
T ss_dssp             EEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHH--HHHHHHT-
T ss_pred             cchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHH--HHHHHHH-
Confidence            689999998       55555554       44433             2345555554321 2222211  2222221 


Q ss_pred             CCCCcEEEEeeCCCCCCcccc--cHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785           55 TDDVPMVLVGNKCDLEEERVV--GKEQGASLARAFACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        55 ~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                       ...|+++|+||.|+...++.  ..+.+.++++.++++++++||+++ |++++|..+.
T Consensus       154 -~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~  209 (301)
T 2qnr_A          154 -NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQT  209 (301)
T ss_dssp             -TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHH
T ss_pred             -hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHH
Confidence             35799999999999754432  235667788888999999999999 9999998765

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.24  E-value=1.1e-11  Score=76.21  Aligned_cols=98  Identities=16%  Similarity=0.101  Sum_probs=64.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||+|+-....   .+..+++.+++|+|++....  ....+.. .      .+.|.++++||+|+.+......+...
T Consensus       111 ~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~~~~-~------~~~~~iiv~NK~Dl~~~~~~~~~~~~  178 (221)
T 2wsm_A          111 LLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEKHPE-I------FRVADLIVINKVALAEAVGADVEKMK  178 (221)
T ss_dssp             EEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHHCHH-H------HHTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred             EEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhhhhh-h------hhcCCEEEEecccCCcchhhHHHHHH
Confidence            46899998521111   11136788999999876532  1111111 1      23789999999998643223455555


Q ss_pred             HHHHHh--CCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAF--ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~--~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +..+..  +.+++++||++|.|++++++++.+
T Consensus       179 ~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~  210 (221)
T 2wsm_A          179 ADAKLINPRAKIIEMDLKTGKGFEEWIDFLRG  210 (221)
T ss_dssp             HHHHHHCTTSEEEECBTTTTBTHHHHHHHHHH
T ss_pred             HHHHHhCCCCeEEEeecCCCCCHHHHHHHHHH
Confidence            555554  468999999999999999998753

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.22  E-value=3.3e-11  Score=76.21  Aligned_cols=71  Identities=11%  Similarity=0.034  Sum_probs=47.8

Q ss_pred             ceEEeCCCcccchhhHHhhcc---------cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMK---------NGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVPMVLVGNKCDLEE   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~---------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~~~   71 (112)
                      +.+|||||++++....+.+++         ++|++++|++++.....+....|+..+.+.... ...|+++|+||+|+.+
T Consensus        86 l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~  165 (262)
T 3def_A           86 INIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP  165 (262)
T ss_dssp             EEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred             EEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence            689999999877544333332         899999999887644212223566666654322 2359999999999864


Q ss_pred             c
Q psy785           72 E   72 (112)
Q Consensus        72 ~   72 (112)
                      .
T Consensus       166 ~  166 (262)
T 3def_A          166 P  166 (262)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.17  E-value=1.4e-11  Score=82.60  Aligned_cols=104  Identities=13%  Similarity=0.135  Sum_probs=50.7

Q ss_pred             ceEEeCCCcccch-------hh------------------HHhhcccCCE--EEEEEeCCChhhHHHHH-HHHHHHHhhc
Q psy785            2 LEILDTAGTEQFT-------AM------------------RDLYMKNGQG--FILVYSITAQSTFNDLS-DLREQILRVK   53 (112)
Q Consensus         2 ~~i~Dt~g~~~~~-------~~------------------~~~~~~~~d~--~i~v~d~~~~~s~~~~~-~~~~~i~~~~   53 (112)
                      +.+|||+|...+.       .+                  .+.++.++++  ++++.+.+. .++.... .|+..+.   
T Consensus        90 Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~---  165 (418)
T 2qag_C           90 LTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLH---  165 (418)
T ss_dssp             EEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHT---
T ss_pred             eeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHh---
Confidence            6799999986541       11                  1234455554  444444331 2233322 4655553   


Q ss_pred             CCCCCcEEEEeeCCCCCCcccccH--HHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           54 DTDDVPMVLVGNKCDLEEERVVGK--EQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        54 ~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                        .+.|+++|+||+|+...+.+..  ..+.+.+...+++++++||+++.++.++|..+.+
T Consensus       166 --~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~  223 (418)
T 2qag_C          166 --EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD  223 (418)
T ss_dssp             --TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC----------------
T ss_pred             --ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHh
Confidence              3689999999999976554433  4566677778999999999999999988876653

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.17  E-value=8.8e-11  Score=75.17  Aligned_cols=96  Identities=13%  Similarity=-0.007  Sum_probs=65.7

Q ss_pred             EEeCCCcc-cchhhHHhhcccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            4 ILDTAGTE-QFTAMRDLYMKNGQGFILVYSITAQSTFN--DLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         4 i~Dt~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      +-..||+. +........++++|+++.|+|+.++.+..  .+..|+         .++|.++|+||+|+.+...  .+..
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l---------~~kp~ilVlNK~DL~~~~~--~~~~   71 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL---------KNKPRIMLLNKADKADAAV--TQQW   71 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC---------SSSCEEEEEECGGGSCHHH--HHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH---------CCCCEEEEEECcccCCHHH--HHHH
Confidence            34567766 44556667789999999999999887653  333332         4689999999999975211  2223


Q ss_pred             HHHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785           81 ASLARAFACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      .++.++.+++++++||+++.|+.++++.+.
T Consensus        72 ~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~  101 (282)
T 1puj_A           72 KEHFENQGIRSLSINSVNGQGLNQIVPASK  101 (282)
T ss_dssp             HHHHHTTTCCEEECCTTTCTTGGGHHHHHH
T ss_pred             HHHHHhcCCcEEEEECCCcccHHHHHHHHH
Confidence            344445578999999999999999887653

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.16  E-value=3.6e-11  Score=86.58  Aligned_cols=64  Identities=19%  Similarity=0.309  Sum_probs=54.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      ++||||||+.+|...+..+++.+|++++|+|+++..+.+....|.... .    .++|+++++||+|+.
T Consensus       100 i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A          100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H----TTCEEEEEEECHHHH
T ss_pred             EEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H----cCCCeEEEEECCCcc
Confidence            689999999999999999999999999999999887777766564332 2    468999999999985

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.15  E-value=8.4e-11  Score=82.56  Aligned_cols=65  Identities=22%  Similarity=0.217  Sum_probs=50.5

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      +++|+||||+.+|.......++-+|++++|+|+...-.-+....|.. +.+    .++|.++++||+|..
T Consensus        68 ~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~-a~~----~~lp~i~~INKmDr~  132 (638)
T 3j25_A           68 KVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHA-LRK----MGIPTIFFINKIDQN  132 (638)
T ss_dssp             BCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHH-HHH----HTCSCEECCEECCSS
T ss_pred             EEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHH-HHH----cCCCeEEEEeccccc
Confidence            37899999999999988899999999999999976543333333432 333    458999999999964

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.13  E-value=5.4e-11  Score=77.92  Aligned_cols=98  Identities=18%  Similarity=0.084  Sum_probs=60.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccH--HH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGK--EQ   79 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~   79 (112)
                      +.||||||.......   ..+.+|++++|+|.+..+.++.+..   ..      .+.|.++|+||+|+.+......  ..
T Consensus       151 i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~~~~~~~~  218 (341)
T 2p67_A          151 VVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTNVAIARHM  218 (341)
T ss_dssp             EEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHHHHHHHHH
T ss_pred             EEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHHHHHHHHH
Confidence            689999997654332   3589999999999875543221111   01      1368899999999864322111  11


Q ss_pred             HHHHHHHh-------CCcEEEeecCCCCChhHHhhhhcc
Q psy785           80 GASLARAF-------ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        80 ~~~~~~~~-------~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ........       ..+++++||++|.|++++++.+.+
T Consensus       219 l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~  257 (341)
T 2p67_A          219 YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIID  257 (341)
T ss_dssp             HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHH
T ss_pred             HHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHH
Confidence            22211121       347899999999999999988753

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.09  E-value=1.9e-10  Score=74.35  Aligned_cols=94  Identities=17%  Similarity=0.069  Sum_probs=66.7

Q ss_pred             cchhhHHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc--cHHHHHHHHHHhC
Q psy785           12 QFTAMRDLYMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV--GKEQGASLARAFA   88 (112)
Q Consensus        12 ~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~   88 (112)
                      +.+.+.+..+.++|.+++|+|...|. +...+.+++.....    .++|+++|.||+|+.+....  ..+...+..+..|
T Consensus        75 R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~----~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g  150 (307)
T 1t9h_A           75 RTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG  150 (307)
T ss_dssp             CSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred             hhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC
Confidence            34456677889999999999998765 44455555444333    57899999999999754320  1223334444568


Q ss_pred             CcEEEeecCCCCChhHHhhhh
Q psy785           89 CTFLETSAKAKVNSWLCVECT  109 (112)
Q Consensus        89 ~~~~~~Sa~~~~~v~~~~~~l  109 (112)
                      ++++.+||.++.|+++++...
T Consensus       151 ~~v~~~sa~~~~g~~~L~~~~  171 (307)
T 1t9h_A          151 YDVYLTSSKDQDSLADIIPHF  171 (307)
T ss_dssp             CCEEECCHHHHTTCTTTGGGG
T ss_pred             CeEEEEecCCCCCHHHHHhhc
Confidence            999999999999999887654

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.07  E-value=4e-10  Score=71.50  Aligned_cols=71  Identities=13%  Similarity=0.060  Sum_probs=46.7

Q ss_pred             ceEEeCCCcccchhhH-------Hhh--cccCCEEEEEEeCCChhhHHH-HHHHHHHHHhhcCC-CCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFTAMR-------DLY--MKNGQGFILVYSITAQSTFND-LSDLREQILRVKDT-DDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~-------~~~--~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~-~~~p~ivv~nK~D~~   70 (112)
                      +.+|||||+.++....       ..+  .+++|++++|+|++.. ++.. ...|+..+.+.... ...|+++|+||+|+.
T Consensus        89 l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~  167 (270)
T 1h65_A           89 LNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFS  167 (270)
T ss_dssp             EEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCC
T ss_pred             EEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccC
Confidence            6899999987664221       112  3479999999988653 2322 23566666554321 126999999999997


Q ss_pred             Ccc
Q psy785           71 EER   73 (112)
Q Consensus        71 ~~~   73 (112)
                      +..
T Consensus       168 ~~~  170 (270)
T 1h65_A          168 PPD  170 (270)
T ss_dssp             CGG
T ss_pred             CcC
Confidence            544

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.04  E-value=2.2e-10  Score=79.24  Aligned_cols=68  Identities=21%  Similarity=0.313  Sum_probs=52.0

Q ss_pred             ceEEeCCCccc-----------chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQ-----------FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      +.||||||...           +...+..++.++|++++|+|+++.........|+..+..    .+.|+++|+||+|+.
T Consensus       156 l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~pvilVlNK~Dl~  231 (550)
T 2qpt_A          156 ISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HEDKIRVVLNKADMV  231 (550)
T ss_dssp             CEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CGGGEEEEEECGGGS
T ss_pred             EEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cCCCEEEEEECCCcc
Confidence            68999999875           556677788999999999999875444445556555543    457999999999987


Q ss_pred             Ccc
Q psy785           71 EER   73 (112)
Q Consensus        71 ~~~   73 (112)
                      +..
T Consensus       232 ~~~  234 (550)
T 2qpt_A          232 ETQ  234 (550)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            543

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.03  E-value=2.1e-09  Score=70.92  Aligned_cols=43  Identities=12%  Similarity=-0.004  Sum_probs=31.2

Q ss_pred             CCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCC
Q psy785           56 DDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKA   98 (112)
Q Consensus        56 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~   98 (112)
                      ..+|+++++|+.|..-......+...+++...+.+++++||+.
T Consensus       198 t~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~  240 (363)
T 1jal_A          198 TLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI  240 (363)
T ss_dssp             TTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred             cCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence            3589999999998642112234556677777789999999875

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.02  E-value=8.1e-10  Score=72.61  Aligned_cols=97  Identities=13%  Similarity=0.097  Sum_probs=58.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.|+||+|....   .....+.+|.+++|+|++.....+.+..   .+      ...|.++|+||+|+.+.... .....
T Consensus       169 ~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~-~~~~~  235 (349)
T 2www_A          169 IILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPA-RRIQA  235 (349)
T ss_dssp             EEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHH-HHHHH
T ss_pred             EEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhH-HHHHH
Confidence            579999995422   1334679999999999986543222111   11      24688999999998632111 11112


Q ss_pred             HHHHH----------hCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARA----------FACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~----------~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+...          .+.+++++||++|.|++++++++.+
T Consensus       236 ~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~  275 (349)
T 2www_A          236 EYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKD  275 (349)
T ss_dssp             HHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHH
Confidence            22211          1347899999999999999998753

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.01  E-value=1.5e-09  Score=71.80  Aligned_cols=50  Identities=14%  Similarity=0.038  Sum_probs=35.4

Q ss_pred             CCcEEEEeeCCCCC--Cc-ccccHHHHHHHHHHhCCcEEEeecCCCCChhHHh
Q psy785           57 DVPMVLVGNKCDLE--EE-RVVGKEQGASLARAFACTFLETSAKAKVNSWLCV  106 (112)
Q Consensus        57 ~~p~ivv~nK~D~~--~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  106 (112)
                      .+|+++++||.|..  +. +....+...++++..+.+++++||+...++.++.
T Consensus       201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~  253 (368)
T 2dby_A          201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELS  253 (368)
T ss_dssp             GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSC
T ss_pred             cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhc
Confidence            47999999999742  21 1223556677888888999999999865555443

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.99  E-value=5.2e-09  Score=74.36  Aligned_cols=64  Identities=22%  Similarity=0.289  Sum_probs=51.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      ++++||||+.+|..-....++-+|++++|+|+...-.-+...-|... .+    .++|.+++.||+|..
T Consensus        87 iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a-~~----~~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           87 VNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQA-NK----YGVPRIVYVNKMDRQ  150 (709)
T ss_dssp             EEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HH----HTCCEEEEEECSSST
T ss_pred             EEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHH-HH----cCCCeEEEEcccccc
Confidence            78999999999999899999999999999999765444443344333 33    468999999999964

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.99  E-value=1.4e-10  Score=82.57  Aligned_cols=105  Identities=14%  Similarity=0.094  Sum_probs=65.7

Q ss_pred             ceEEeCCCccc-------------chhhHHhhc-ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCC
Q psy785            2 LEILDTAGTEQ-------------FTAMRDLYM-KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKC   67 (112)
Q Consensus         2 ~~i~Dt~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~   67 (112)
                      +.|+||||...             ...+...++ ..+|++++|+|.+....-.....+...+.    ..+.|+++|.||+
T Consensus       152 L~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~----~~g~pvIlVlNKi  227 (772)
T 3zvr_A          152 LTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGVITKL  227 (772)
T ss_dssp             EEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC----TTCSSEEEEEECT
T ss_pred             eEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH----hcCCCEEEEEeCc
Confidence            67999999543             223444444 57899999999976532222212333333    2568999999999


Q ss_pred             CCCCcccccHHHHHH-H-HHHhCC-cEEEeecCCCCChhHHhhhhc
Q psy785           68 DLEEERVVGKEQGAS-L-ARAFAC-TFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        68 D~~~~~~~~~~~~~~-~-~~~~~~-~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      |+.+........... . ....++ +++.+||++|.|++++++.+.
T Consensus       228 Dlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~  273 (772)
T 3zvr_A          228 DLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALA  273 (772)
T ss_dssp             TSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHH
T ss_pred             ccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHH
Confidence            997544332211110 0 001233 678899999999999988765

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.92  E-value=1e-09  Score=69.60  Aligned_cols=92  Identities=12%  Similarity=0.066  Sum_probs=62.1

Q ss_pred             CCccc-chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHH
Q psy785            8 AGTEQ-FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARA   86 (112)
Q Consensus         8 ~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~   86 (112)
                      ||+.. ........++++|++++|+|+.++.+....     .+. ..   ++|.++|.||+|+.+...  .+...++.++
T Consensus         5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-ll---~k~~iivlNK~DL~~~~~--~~~~~~~~~~   73 (262)
T 3cnl_A            5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-FS---RKETIILLNKVDIADEKT--TKKWVEFFKK   73 (262)
T ss_dssp             ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-CT---TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-hc---CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence            56553 234566678999999999999888654321     011 11   689999999999975321  2233344455


Q ss_pred             hCCcEEEeecCCCCChhHHhhhhcc
Q psy785           87 FACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        87 ~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++++ .+||+++.|++++++.+.+
T Consensus        74 ~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           74 QGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             cCCeE-EEECCCCcCHHHHHHHHHH
Confidence            67888 9999999999999988754

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.84  E-value=1.3e-08  Score=66.58  Aligned_cols=98  Identities=12%  Similarity=0.074  Sum_probs=59.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.|+||+|...-..   .....+|.+++++|.+..+..+.+...   +.      ..|.+++.||+|+.+....+....+
T Consensus       150 ~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~------~~~~ivvlNK~Dl~~~~~~s~~~~~  217 (337)
T 2qm8_A          150 VILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKG---IF------ELADMIAVNKADDGDGERRASAAAS  217 (337)
T ss_dssp             EEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTT---HH------HHCSEEEEECCSTTCCHHHHHHHHH
T ss_pred             EEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHH---Hh------ccccEEEEEchhccCchhHHHHHHH
Confidence            57999999754322   234789999999998654322211111   11      2466788899997532222222223


Q ss_pred             HHHHHh----------CCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAF----------ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~----------~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++....          ..+++.+||+++.|++++++.+.+
T Consensus       218 ~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~  257 (337)
T 2qm8_A          218 EYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIED  257 (337)
T ss_dssp             HHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHH
Confidence            333221          347899999999999999987753

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.71  E-value=7.5e-08  Score=63.47  Aligned_cols=85  Identities=16%  Similarity=0.106  Sum_probs=57.2

Q ss_pred             hcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc-HHHHHHHHHHhCCcEEEeecC
Q psy785           20 YMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG-KEQGASLARAFACTFLETSAK   97 (112)
Q Consensus        20 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~   97 (112)
                      ...++|.+++|.... |. +...+.+++.....    .++|+++|.||+|+.+..... .+.........|++++.+||.
T Consensus       127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~  201 (358)
T 2rcn_A          127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSH  201 (358)
T ss_dssp             EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTT
T ss_pred             HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecC
Confidence            367999999887654 44 45555666544433    458889999999997532200 111222334568899999999


Q ss_pred             CCCChhHHhhhh
Q psy785           98 AKVNSWLCVECT  109 (112)
Q Consensus        98 ~~~~v~~~~~~l  109 (112)
                      ++.|++++...+
T Consensus       202 ~~~gl~~L~~~~  213 (358)
T 2rcn_A          202 TQDGLKPLEEAL  213 (358)
T ss_dssp             TTBTHHHHHHHH
T ss_pred             CCcCHHHHHHhc
Confidence            999999886643

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.69  E-value=1.2e-08  Score=62.69  Aligned_cols=54  Identities=17%  Similarity=0.049  Sum_probs=42.4

Q ss_pred             CcEEEEeeCCCCCCcccccHHHHHHHHHHh--CCcEEEeecCCCCChhHHhhhhcc
Q psy785           58 VPMVLVGNKCDLEEERVVGKEQGASLARAF--ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        58 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .|.++++||+|+.+......+....+++..  +.+++++||++|.|++++|+++.+
T Consensus       165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  220 (226)
T 2hf9_A          165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEK  220 (226)
T ss_dssp             TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHH
Confidence            577999999998654334556666666655  569999999999999999998753

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.96  E-value=2.5e-05  Score=53.69  Aligned_cols=98  Identities=12%  Similarity=0.051  Sum_probs=57.7

Q ss_pred             ceEEeCCCcccch-hhHHh---h--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcE-EEEeeCCCCCCccc
Q psy785            2 LEILDTAGTEQFT-AMRDL---Y--MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM-VLVGNKCDLEEERV   74 (112)
Q Consensus         2 ~~i~Dt~g~~~~~-~~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~nK~D~~~~~~   74 (112)
                      +.|+||||..... .+...   .  ...+|.+++|+|.+.......   ....+.+     .+|+ .+|.||+|......
T Consensus       186 vvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~-----~~~i~gvVlNK~D~~~~~g  257 (504)
T 2j37_W          186 IIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKD-----KVDVASVIVTKLDGHAKGG  257 (504)
T ss_dssp             EEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHH-----HHCCCCEEEECTTSCCCCT
T ss_pred             EEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHh-----hcCceEEEEeCCccccchH
Confidence            5799999976421 11111   1  237899999999976432111   1222222     1574 88899999864322


Q ss_pred             ccHHHHHHHHHHhCCcE------------------EEeecCCCCC-hhHHhhhhcc
Q psy785           75 VGKEQGASLARAFACTF------------------LETSAKAKVN-SWLCVECTND  111 (112)
Q Consensus        75 ~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-v~~~~~~l~~  111 (112)
                      .    ........+.|+                  +.+|+..|.| +.++++++.+
T Consensus       258 ~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e  309 (504)
T 2j37_W          258 G----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE  309 (504)
T ss_dssp             H----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTT
T ss_pred             H----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHH
Confidence            1    112233444443                  3468888988 8888888763

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=97.89  E-value=0.00026  Score=47.02  Aligned_cols=86  Identities=8%  Similarity=0.104  Sum_probs=51.2

Q ss_pred             ceEEeCCCcccch-------hhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCCcEEEEeeCCCCCC--
Q psy785            2 LEILDTAGTEQFT-------AMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK-DTDDVPMVLVGNKCDLEE--   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~p~ivv~nK~D~~~--   71 (112)
                      +++.||||..+..       ......+++||++++|+|.++|..  .......++.... .....|.+++.||.|...  
T Consensus       121 i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~  198 (376)
T 4a9a_A          121 IQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGIS  198 (376)
T ss_dssp             EEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEE
T ss_pred             EEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhh
Confidence            6899999965321       122335789999999999998642  2222333333321 124578899999999632  


Q ss_pred             ------cccccHHHHHHHHHHhCC
Q psy785           72 ------ERVVGKEQGASLARAFAC   89 (112)
Q Consensus        72 ------~~~~~~~~~~~~~~~~~~   89 (112)
                            ......++...+...+.+
T Consensus       199 i~~~~~~~~l~~eeik~il~~~~l  222 (376)
T 4a9a_A          199 ITNTVPLTHLGNDEIRAVMSEYRI  222 (376)
T ss_dssp             EEESSCCSSCCHHHHHHHHHHTTC
T ss_pred             hhcchhhhhccHHHHHHHHHHhcc
Confidence                  122344555555555544

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.62  E-value=3e-05  Score=51.83  Aligned_cols=35  Identities=14%  Similarity=0.089  Sum_probs=23.2

Q ss_pred             ceEEeCCCcccchh-------hHHhhcccCCEEEEEEeCCCh
Q psy785            2 LEILDTAGTEQFTA-------MRDLYMKNGQGFILVYSITAQ   36 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~-------~~~~~~~~~d~~i~v~d~~~~   36 (112)
                      +++|||||+.++.+       .+..+++++|++++|+|+++.
T Consensus        88 i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~  129 (396)
T 2ohf_A           88 LNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFED  129 (396)
T ss_dssp             EEEEECCC-----------CCHHHHHHHTSSSEEEEEEC---
T ss_pred             cEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence            78999999887543       456678999999999998754

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=97.24  E-value=0.0032  Score=42.13  Aligned_cols=42  Identities=10%  Similarity=0.011  Sum_probs=29.2

Q ss_pred             CCcEEEEeeCCCCC-C-cccccHHHHHHHHHHhC--CcEEEeecCC
Q psy785           57 DVPMVLVGNKCDLE-E-ERVVGKEQGASLARAFA--CTFLETSAKA   98 (112)
Q Consensus        57 ~~p~ivv~nK~D~~-~-~~~~~~~~~~~~~~~~~--~~~~~~Sa~~   98 (112)
                      ..|++.++|+.|.. . ......+...+++.+.+  .+++++||+.
T Consensus       224 ~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~  269 (392)
T 1ni3_A          224 AKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAF  269 (392)
T ss_dssp             GSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHH
T ss_pred             cCceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHH
Confidence            48999999999832 1 11222456677777665  7899999985

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.03  E-value=0.0067  Score=41.22  Aligned_cols=91  Identities=15%  Similarity=0.004  Sum_probs=53.0

Q ss_pred             ceEEeCCCcccchh-----hHH-hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc
Q psy785            2 LEILDTAGTEQFTA-----MRD-LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV   75 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~-----~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~   75 (112)
                      +-|+||||......     +.. .....+|.+++|+|.+.......   ....+.+    .-.+..+|.||.|.....  
T Consensus       185 vVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~----~~~i~gVIlTKlD~~~~g--  255 (443)
T 3dm5_A          185 IIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKE----ATPIGSIIVTKLDGSAKG--  255 (443)
T ss_dssp             EEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHH----SCTTEEEEEECCSSCSSH--
T ss_pred             EEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHh----hCCCeEEEEECCCCcccc--
Confidence            45899999543211     111 11346899999999876433222   2222332    123556889999975422  


Q ss_pred             cHHHHHHHHHHhCCcEEEeecCCCCChhHH
Q psy785           76 GKEQGASLARAFACTFLETSAKAKVNSWLC  105 (112)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  105 (112)
                        ..........+.|+.+++.  |++++++
T Consensus       256 --G~~ls~~~~~g~PI~fig~--Ge~vddL  281 (443)
T 3dm5_A          256 --GGALSAVAATGAPIKFIGT--GEKIDDI  281 (443)
T ss_dssp             --HHHHHHHHTTCCCEEEEEC--SSSTTCE
T ss_pred             --cHHHHHHHHHCCCEEEEEc--CCChHHh
Confidence              2233445567889988886  6666543

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.87  E-value=0.0079  Score=35.92  Aligned_cols=84  Identities=8%  Similarity=0.017  Sum_probs=53.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      +-++|||+..  .......+..+|.++++...+...  ..+...+..+.+... ..+.++.+|.|+.+...  .. ....
T Consensus        78 ~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~--~~-~~~~  150 (206)
T 4dzz_A           78 FAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA--TM-LNVL  150 (206)
T ss_dssp             EEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE--EE-EHHH
T ss_pred             EEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc--hH-HHHH
Confidence            4689999765  334455677899999999876543  556666666654322 13567789999998532  12 2334


Q ss_pred             HHHHHHhCCcEE
Q psy785           81 ASLARAFACTFL   92 (112)
Q Consensus        81 ~~~~~~~~~~~~   92 (112)
                      .+..++++.+++
T Consensus       151 ~~~l~~~~~~vl  162 (206)
T 4dzz_A          151 KESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHTCCBC
T ss_pred             HHHHHHcCCcee
Confidence            555555665544

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.84  E-value=0.015  Score=39.34  Aligned_cols=96  Identities=17%  Similarity=0.045  Sum_probs=53.0

Q ss_pred             ceEEeCCCcccchh-hHH---hh--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCC-c-EEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQFTA-MRD---LY--MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDV-P-MVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~-~~~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-p-~ivv~nK~D~~~~~   73 (112)
                      +-|+||||...... +..   ..  +..+|.+++|+|.+.....   ......+.     ... | ..+|.||+|.....
T Consensus       183 ~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~---~~~~~~~~-----~~~~~i~gvVlnK~D~~~~~  254 (432)
T 2v3c_C          183 VLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQA---GIQAKAFK-----EAVGEIGSIIVTKLDGSAKG  254 (432)
T ss_dssp             EEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGH---HHHHHHHH-----TTSCSCEEEEEECSSSCSTT
T ss_pred             EEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHH---HHHHHHHh-----hcccCCeEEEEeCCCCccch
Confidence            46899999764321 111   11  2368999999998654321   11112221     224 5 78899999975322


Q ss_pred             cccHHHHHHHHHHhCCcEEEe------------------ecCCCCC-hhHHhhhh
Q psy785           74 VVGKEQGASLARAFACTFLET------------------SAKAKVN-SWLCVECT  109 (112)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~------------------Sa~~~~~-v~~~~~~l  109 (112)
                      .    .........+.++.++                  |+..|.| +..+++.+
T Consensus       255 g----~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~  305 (432)
T 2v3c_C          255 G----GALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKA  305 (432)
T ss_dssp             H----HHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTT
T ss_pred             H----HHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHH
Confidence            1    2223445556555444                  5666666 55555554

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.62  E-value=0.045  Score=35.16  Aligned_cols=89  Identities=17%  Similarity=0.051  Sum_probs=52.9

Q ss_pred             ceEEeCCCccc--chh-hHH-----hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCc
Q psy785            2 LEILDTAGTEQ--FTA-MRD-----LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEE   72 (112)
Q Consensus         2 ~~i~Dt~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~   72 (112)
                      +-++||||...  ... +..     .....+|.+++|+|.+....   .......+.+     ..| .-+|.||.|....
T Consensus       183 ~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~i~gvVlnk~D~~~~  254 (297)
T 1j8m_F          183 IIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ-----ASKIGTIIITKMDGTAK  254 (297)
T ss_dssp             EEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH-----TCTTEEEEEECGGGCTT
T ss_pred             EEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh-----hCCCCEEEEeCCCCCcc
Confidence            46899999776  321 221     12447899999999864321   1112222222     245 6678999997532


Q ss_pred             ccccHHHHHHHHHHhCCcEEEeecCCCCChhH
Q psy785           73 RVVGKEQGASLARAFACTFLETSAKAKVNSWL  104 (112)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  104 (112)
                          ...........+.|+.+++  .|.++++
T Consensus       255 ----~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          255 ----GGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             ----HHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ----hHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence                2234456667788888877  4666544

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.51  E-value=0.029  Score=38.01  Aligned_cols=89  Identities=18%  Similarity=0.098  Sum_probs=51.8

Q ss_pred             ceEEeCCCccc--ch-----hhHHh-hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQ--FT-----AMRDL-YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~--~~-----~~~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~   73 (112)
                      +-+.||||...  ..     .+... ..-.++.+++|+|.+.......+   ...+.+.    -.+..++.||.|.... 
T Consensus       182 vvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~---a~~f~~~----~~~~gVIlTKlD~~a~-  253 (433)
T 3kl4_A          182 IIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL---ASRFHQA----SPIGSVIITKMDGTAK-  253 (433)
T ss_dssp             EEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH---HHHHHHH----CSSEEEEEECGGGCSC-
T ss_pred             EEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH---HHHHhcc----cCCcEEEEeccccccc-
Confidence            45899999643  11     11110 12256999999998764332222   2223321    1357788999997532 


Q ss_pred             cccHHHHHHHHHHhCCcEEEeecCCCCChh
Q psy785           74 VVGKEQGASLARAFACTFLETSAKAKVNSW  103 (112)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  103 (112)
                         ...........+.|+.+++.  |.+++
T Consensus       254 ---~G~als~~~~~g~Pi~fig~--Ge~v~  278 (433)
T 3kl4_A          254 ---GGGALSAVVATGATIKFIGT--GEKID  278 (433)
T ss_dssp             ---HHHHHHHHHHHTCEEEEEEC--CSSSS
T ss_pred             ---chHHHHHHHHHCCCEEEEEC--CCChH
Confidence               22334455567899988886  66654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=96.22  E-value=0.00022  Score=47.19  Aligned_cols=97  Identities=9%  Similarity=-0.020  Sum_probs=55.0

Q ss_pred             ceEEeCCCcccchh--------hHHhhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785            2 LEILDTAGTEQFTA--------MRDLYM--KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~--------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~   71 (112)
                      +.++||||......        ....++  +..+.++++++..+..-+..+..     .......+.|++++.||.|...
T Consensus       214 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~  288 (369)
T 3ec1_A          214 ATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVH  288 (369)
T ss_dssp             CEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEE
T ss_pred             eEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCcccc
Confidence            57999999543221        111122  67899999999743211111100     1111124689999999999864


Q ss_pred             cccccHHHHHHHHHHhCCcEEEeecCCCCChhH
Q psy785           72 ERVVGKEQGASLARAFACTFLETSAKAKVNSWL  104 (112)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  104 (112)
                      .... ......+.+..|..+.+.++.+..++.+
T Consensus       289 ~~~~-~~~~~~~~~~~g~~l~p~~~~~~~~~~~  320 (369)
T 3ec1_A          289 RTKL-EKADSLYANQLGELLSPPSKRYAAEFPP  320 (369)
T ss_dssp             EEEG-GGHHHHHHHHBTTTBCSSCGGGTTTCCC
T ss_pred             cccH-HHHHHHHHHhcCCccCCCCchhhhhccC
Confidence            3332 3334455566777777777766555443

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=96.08  E-value=0.091  Score=31.75  Aligned_cols=83  Identities=7%  Similarity=0.017  Sum_probs=52.1

Q ss_pred             ceEEeCCCc-ccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            2 LEILDTAGT-EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         2 ~~i~Dt~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      +-++|||+. ...  .....+..+|.++++...+ ..++..+...+..+.+..   +.+..+|.|+.+.... . ...+.
T Consensus        70 ~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~~-~-~~~~~  141 (209)
T 3cwq_A           70 NIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG---NNRFRILLTIIPPYPS-K-DGDEA  141 (209)
T ss_dssp             EEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTTS-C-HHHHH
T ss_pred             EEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc---CCCEEEEEEecCCccc-h-HHHHH
Confidence            458999976 332  3345667899999999875 456666666666665532   4678899999986431 1 13344


Q ss_pred             HHHHHHhCCcEE
Q psy785           81 ASLARAFACTFL   92 (112)
Q Consensus        81 ~~~~~~~~~~~~   92 (112)
                      .+..++++.+++
T Consensus       142 ~~~l~~~g~~v~  153 (209)
T 3cwq_A          142 RQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHTTCCBC
T ss_pred             HHHHHHcCCchh
Confidence            455555665544

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=95.72  E-value=0.00028  Score=46.69  Aligned_cols=95  Identities=8%  Similarity=-0.005  Sum_probs=51.5

Q ss_pred             ceEEeCCCcccchh--------hHHhh--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785            2 LEILDTAGTEQFTA--------MRDLY--MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~--------~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~   71 (112)
                      +.++||||......        ....+  .+..+.++++++.....-...+..     .......+.|++++.||.|...
T Consensus       213 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~~~~~~~~v~nk~d~~~  287 (368)
T 3h2y_A          213 SSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSGGRRAFTCHFSNRLTIH  287 (368)
T ss_dssp             CEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEE
T ss_pred             eEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE-----EEEecCCCceEEEEecCccccc
Confidence            57999999643221        11111  357888999998743211111100     1111124689999999999864


Q ss_pred             cccccHHHHHHHHHHhCCcEEEeecCCCCCh
Q psy785           72 ERVVGKEQGASLARAFACTFLETSAKAKVNS  102 (112)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  102 (112)
                      .... ......+.+..|..+.+.++.+..++
T Consensus       288 ~~~~-~~~~~~~~~~~g~~l~p~~~~~~~~~  317 (368)
T 3h2y_A          288 RTKL-EKADELYKNHAGDLLSPPTPEELENM  317 (368)
T ss_dssp             EEEH-HHHHHHHHHHBTTTBCSSCHHHHHTS
T ss_pred             cccH-HHHHHHHHHHhCCccCCCchhhHhhc
Confidence            3332 33344455566666666565543333

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=94.89  E-value=0.25  Score=30.64  Aligned_cols=66  Identities=11%  Similarity=0.152  Sum_probs=40.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCCcEE-EEeeCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD--TDDVPMV-LVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~i-vv~nK~D~~   70 (112)
                      +-++|||+....  .....+..+|.+++++..+. .++..+...+..+.....  ..+.+++ +|.|+.+..
T Consensus       114 ~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~  182 (257)
T 1wcv_1          114 LVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR  182 (257)
T ss_dssp             EEEEECCSSCCH--HHHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred             EEEEeCCCCCCH--HHHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence            458999975432  23345567999999999764 444444444333332211  1356664 889999854

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=94.40  E-value=0.26  Score=30.69  Aligned_cols=87  Identities=15%  Similarity=0.168  Sum_probs=48.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEeeCCCCCC-----cccc
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV-LVGNKCDLEE-----ERVV   75 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~~~-----~~~~   75 (112)
                      +-|+|||+...........+..+|.++++...+. .+...+...+..+.+    .+.+++ +|.|+.|...     ....
T Consensus       131 ~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~~~  205 (262)
T 2ph1_A          131 HLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQE-LTAVIVEKAINMAEE----TNTSVLGLVENMSYFVCPNCGHKSYI  205 (262)
T ss_dssp             EEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSS-CCHHHHHHHHHHHHT----TTCCEEEEEETTCCEECTTTCCEECT
T ss_pred             EEEEECcCCCchHHHHHHhhccCCeEEEEecCcc-chHHHHHHHHHHHHh----CCCCEEEEEECCCccCCccccccccc
Confidence            4589999754322222222236899999987653 455555555555543    346776 8899987421     1111


Q ss_pred             -cHHHHHHHHHHhCCcEEE
Q psy785           76 -GKEQGASLARAFACTFLE   93 (112)
Q Consensus        76 -~~~~~~~~~~~~~~~~~~   93 (112)
                       .......+.+.++.+++.
T Consensus       206 ~~~~~~~~~~~~~g~~~~~  224 (262)
T 2ph1_A          206 FGEGKGESLAKKYNIGFFT  224 (262)
T ss_dssp             TCCCCHHHHHHHTTCSEEE
T ss_pred             ccccHHHHHHHHcCCCeEE
Confidence             111234555667776554

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=94.18  E-value=0.32  Score=30.25  Aligned_cols=62  Identities=10%  Similarity=0.074  Sum_probs=42.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD   68 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D   68 (112)
                      +-++|||+..  .......+..+|.++++...+ ..+...+......+.+..  .+.++.+|.|+..
T Consensus       147 ~viiD~pp~~--~~~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~~vv~N~~~  208 (267)
T 3k9g_A          147 YIVIDTNPSL--DVTLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFVRKLN--LFLPIFLIITRFK  208 (267)
T ss_dssp             EEEEEECSSC--SHHHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHHTTT--CCCCEEEEEEEEC
T ss_pred             EEEEECcCCc--cHHHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHHHHh--ccCCEEEEEeccc
Confidence            4588998644  233455566799999999975 456666666666555532  3467789999994

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=94.04  E-value=0.6  Score=28.84  Aligned_cols=81  Identities=12%  Similarity=0.089  Sum_probs=49.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +-|+|+|+...  ......+..+|.++++...+ ..+...+...+..+.+.   ...+.-+|.|+.+.....    ....
T Consensus       113 ~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~~~----~~~~  182 (263)
T 1hyq_A          113 ILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL---GTKVLGVVVNRITTLGIE----MAKN  182 (263)
T ss_dssp             EEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH---TCEEEEEEEEEECTTTHH----HHHH
T ss_pred             EEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhc---CCCeeEEEEccCCccccc----chHH
Confidence            45899996543  33445567899999998864 45666666666665553   123455789999854211    2334


Q ss_pred             HHHHHhCCcEE
Q psy785           82 SLARAFACTFL   92 (112)
Q Consensus        82 ~~~~~~~~~~~   92 (112)
                      ...+..+.+++
T Consensus       183 ~~~~~~~~~~~  193 (263)
T 1hyq_A          183 EIEAILEAKVI  193 (263)
T ss_dssp             HHHHHTTSCEE
T ss_pred             HHHHHhCCCeE
Confidence            44455666544

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=93.81  E-value=0.62  Score=28.21  Aligned_cols=63  Identities=16%  Similarity=0.079  Sum_probs=42.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      +-++|+|+...  ......+..+|.++++...+ ..+...+...+..+.+.   ...+.-+|.|+.+..
T Consensus       114 ~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~  176 (237)
T 1g3q_A          114 FILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRS  176 (237)
T ss_dssp             EEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSC
T ss_pred             EEEEECCCCcC--HHHHHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhC---CCceEEEEEecCCcc
Confidence            45889987543  33455678899999999865 45666666666666553   123456788999864

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=93.81  E-value=0.14  Score=31.62  Aligned_cols=65  Identities=8%  Similarity=0.029  Sum_probs=42.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-----CCCCcEEEEeeCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-----TDDVPMVLVGNKCDL   69 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~~~p~ivv~nK~D~   69 (112)
                      +-++|||+...  ......+..+|.++++.+.+ ..++..+...+..+.....     ....+.-+|.|+.+.
T Consensus       116 ~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~  185 (260)
T 3q9l_A          116 FIVCDSPAGIE--TGALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP  185 (260)
T ss_dssp             EEEEECCSSSS--HHHHHHHHTCSEEEEEECSS-HHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred             EEEEcCCCCCC--HHHHHHHHhCCEEEEEecCC-hhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence            45899997443  34555677899999999864 5566666666555543221     012467788999984

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=93.80  E-value=0.64  Score=28.29  Aligned_cols=84  Identities=7%  Similarity=0.090  Sum_probs=53.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +-++|||+...  ......+..+|.++++...+ ..+...+...+..+.+.. .....+-+|.|+.+...  ....   +
T Consensus       121 ~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~-~~~~~~~~v~N~~~~~~--~~~~---~  191 (245)
T 3ea0_A          121 YIIVDFGASID--HVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFE-KPISRIEIILNRADTNS--RITS---D  191 (245)
T ss_dssp             EEEEEEESSCC--TTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCS-SCCSCEEEEEESTTSCT--TSCH---H
T ss_pred             EEEEeCCCCCc--hHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhC-CCccceEEEEecCCCCC--CCCH---H
Confidence            45889987442  24455678899999999875 567777777766665432 22356778899998643  2222   2


Q ss_pred             HHHHHhCCcEEEe
Q psy785           82 SLARAFACTFLET   94 (112)
Q Consensus        82 ~~~~~~~~~~~~~   94 (112)
                      .+.+.++.+++.+
T Consensus       192 ~~~~~~~~~v~~~  204 (245)
T 3ea0_A          192 EIEKVIGRPISKR  204 (245)
T ss_dssp             HHHHHHTSCEEEE
T ss_pred             HHHHHhCCCeEEE
Confidence            3444567666544

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=92.53  E-value=1.1  Score=27.65  Aligned_cols=86  Identities=12%  Similarity=0.135  Sum_probs=50.3

Q ss_pred             ceEEeCCCcccchhhH-HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcE-EEEeeCCCCCCcccccHHH
Q psy785            2 LEILDTAGTEQFTAMR-DLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM-VLVGNKCDLEEERVVGKEQ   79 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~nK~D~~~~~~~~~~~   79 (112)
                      +-++||||......+. ......+|.++++...+ ..++..+...+..+.......+.++ -+|.|+.+..    ...+.
T Consensus       118 ~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----~~~~~  192 (269)
T 1cp2_A          118 YVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA----NEYEL  192 (269)
T ss_dssp             EEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS----CCHHH
T ss_pred             EEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCc-hhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc----hhHHH
Confidence            4588998754322221 12235789999998864 4566666666666655433234554 5788998632    12344


Q ss_pred             HHHHHHHhCCcEE
Q psy785           80 GASLARAFACTFL   92 (112)
Q Consensus        80 ~~~~~~~~~~~~~   92 (112)
                      ...+.+.++.+++
T Consensus       193 ~~~l~~~~~~~v~  205 (269)
T 1cp2_A          193 LDAFAKELGSQLI  205 (269)
T ss_dssp             HHHHHHHHTCCEE
T ss_pred             HHHHHHHcCCccc
Confidence            4556566776655

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=92.22  E-value=0.76  Score=27.91  Aligned_cols=61  Identities=11%  Similarity=0.001  Sum_probs=40.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD   68 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D   68 (112)
                      +-++|||+....  .....+..+|.++++...+ ..++..+......+.+.   ....+.++.||.+
T Consensus       134 ~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~---~~~~~~~v~N~~~  194 (254)
T 3kjh_A          134 AVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPN-LNSIKTGLNIEKLAGDL---GIKKVRYVINKVR  194 (254)
T ss_dssp             EEEEEECTTCTT--CCHHHHTTCSEEEEEECSS-HHHHHHHHHHHHHHHHH---TCSCEEEEEEEEC
T ss_pred             EEEEeCCCcccH--HHHHHHHHCCEEEEecCCC-HHHHHHHHHHHHHHHHc---CCccEEEEEeCCC
Confidence            458899864432  3445568899999999874 55666665555544332   1245778899998

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=91.69  E-value=0.55  Score=29.66  Aligned_cols=32  Identities=13%  Similarity=0.191  Sum_probs=23.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA   35 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~   35 (112)
                      +-|+|||+..  .......+..+|.++++...+.
T Consensus       106 ~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~  137 (286)
T 2xj4_A          106 FILIDTPGGD--SAITRMAHGRADLVVTPMNDSF  137 (286)
T ss_dssp             EEEEECCSSC--CHHHHHHHHTCSEEEEEEESSH
T ss_pred             EEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc
Confidence            4589999764  3445566789999999998753

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=90.80  E-value=2.6  Score=28.40  Aligned_cols=100  Identities=15%  Similarity=0.087  Sum_probs=53.4

Q ss_pred             ceEEeCCCccc----chhhHH-hhcccCCEEEEEEeCC--ChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC--Cc
Q psy785            2 LEILDTAGTEQ----FTAMRD-LYMKNGQGFILVYSIT--AQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE--EE   72 (112)
Q Consensus         2 ~~i~Dt~g~~~----~~~~~~-~~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~--~~   72 (112)
                      +.+||++|...    ...... .-+.+.+..++ ++..  ..... .+..   .+..    .+.|+++|.||.|+.  ++
T Consensus       122 ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv-~la~---aL~~----~~~p~~lV~tkpdlllLDE  192 (413)
T 1tq4_A          122 VVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFKKNDI-DIAK---AISM----MKKEFYFVRTKVDSDITNE  192 (413)
T ss_dssp             EEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHH-HHHH---HHHH----TTCEEEEEECCHHHHHHHH
T ss_pred             eeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCccHHHH-HHHH---HHHh----cCCCeEEEEecCcccccCc
Confidence            57899998532    111111 12345566665 7765  22221 1122   2222    357999999999863  10


Q ss_pred             -----ccccHH----HHHHHHH----HhC---CcEEEeec--CCCCChhHHhhhhc
Q psy785           73 -----RVVGKE----QGASLAR----AFA---CTFLETSA--KAKVNSWLCVECTN  110 (112)
Q Consensus        73 -----~~~~~~----~~~~~~~----~~~---~~~~~~Sa--~~~~~v~~~~~~l~  110 (112)
                           ......    ...+++.    +.+   ..++.+|+  .++.|++++.+.+.
T Consensus       193 PtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~  248 (413)
T 1tq4_A          193 ADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI  248 (413)
T ss_dssp             HTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence                 111122    2233331    222   26788999  66677999887764

>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A

Probab=90.18  E-value=2.9  Score=27.77  Aligned_cols=65  Identities=11%  Similarity=0.018  Sum_probs=34.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh---h---HHHHHHHHHHHHhhcCCCCCc-EEEEeeCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS---T---FNDLSDLREQILRVKDTDDVP-MVLVGNKCD   68 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s---~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D   68 (112)
                      +-|+|||..-.  ......+..+|.++++...+...   +   +..+......+.+......+. ++.+.|+.+
T Consensus       250 ~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~  321 (403)
T 3ez9_A          250 FIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMT  321 (403)
T ss_dssp             EEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC--
T ss_pred             EEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccC
Confidence            46889996443  33445567899999999875432   1   122233333333322112222 455788887

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=90.00  E-value=2.4  Score=26.61  Aligned_cols=86  Identities=14%  Similarity=0.159  Sum_probs=48.3

Q ss_pred             ceEEeCCCcccchhh-HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCcccccHHH
Q psy785            2 LEILDTAGTEQFTAM-RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERVVGKEQ   79 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~   79 (112)
                      +-|+||||......+ .......+|.++++...+ ..++..+...+..+.......+.+ .-+|.|+.+..    .....
T Consensus       121 ~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----~~~~~  195 (289)
T 2afh_E          121 FVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD----REDEL  195 (289)
T ss_dssp             EEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT----THHHH
T ss_pred             EEEEeCCCccccchhhhhhhhhhCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCch----hHHHH
Confidence            458899875432222 122235789999988864 456666555555555433223455 34678998632    12333


Q ss_pred             HHHHHHHhCCcEE
Q psy785           80 GASLARAFACTFL   92 (112)
Q Consensus        80 ~~~~~~~~~~~~~   92 (112)
                      ...+.+.++.+++
T Consensus       196 ~~~l~~~~g~~~l  208 (289)
T 2afh_E          196 IIALANKLGTQMI  208 (289)
T ss_dssp             HHHHHHHHTSCEE
T ss_pred             HHHHHHHcCcccc
Confidence            4455566676655

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=89.71  E-value=2.3  Score=27.65  Aligned_cols=89  Identities=15%  Similarity=0.069  Sum_probs=49.6

Q ss_pred             eEEeCCCcccchh-hHHh-----hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc
Q psy785            3 EILDTAGTEQFTA-MRDL-----YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG   76 (112)
Q Consensus         3 ~i~Dt~g~~~~~~-~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~   76 (112)
                      .+.||+|...... +...     ..-.+|-.++++|.+...   ........+.+.   .+ ...++.||.|-....   
T Consensus       215 vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~---~~-it~iilTKlD~~a~~---  284 (328)
T 3e70_C          215 VLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEA---VK-IDGIILTKLDADARG---  284 (328)
T ss_dssp             EEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH---SC-CCEEEEECGGGCSCC---
T ss_pred             hHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHh---cC-CCEEEEeCcCCccch---
Confidence            4789999643221 1111     112478889999976543   222223333321   12 346778999963321   


Q ss_pred             HHHHHHHHHHhCCcEEEeecCCCCChhH
Q psy785           77 KEQGASLARAFACTFLETSAKAKVNSWL  104 (112)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  104 (112)
                       -.........+.|+.+++  +|.++++
T Consensus       285 -G~~l~~~~~~~~pi~~i~--~Ge~v~d  309 (328)
T 3e70_C          285 -GAALSISYVIDAPILFVG--VGQGYDD  309 (328)
T ss_dssp             -HHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred             -hHHHHHHHHHCCCEEEEe--CCCCccc
Confidence             223456667789988888  6666544

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=88.89  E-value=1.5  Score=27.53  Aligned_cols=63  Identities=17%  Similarity=0.231  Sum_probs=38.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEeeCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV-LVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~~   70 (112)
                      +-|+|||+...... .......+|.+++++.... .+...+......+.+    .+.+++ +|.|+.|..
T Consensus       194 ~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~~-~~~~~~~~~~~~l~~----~~~~~~GvVlN~~~~~  257 (271)
T 3bfv_A          194 FVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSEN-NNKDEVKKGKELIEA----TGAKLLGVVLNRMPKD  257 (271)
T ss_dssp             EEEEECCCTTTCSH-HHHHHHHHCEEEEEEETTS-CCHHHHHHHHHHHHT----TTCEEEEEEEEEECC-
T ss_pred             EEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCCC-CcHHHHHHHHHHHHh----CCCCEEEEEEeCCcCC
Confidence            45899997543211 2234467899999998754 344555555555543    345665 789999864

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=88.85  E-value=2.8  Score=26.35  Aligned_cols=82  Identities=13%  Similarity=0.181  Sum_probs=44.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCCcEE-EEeeCCCCCCcccccHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD--TDDVPMV-LVGNKCDLEEERVVGKE   78 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~i-vv~nK~D~~~~~~~~~~   78 (112)
                      +-|+|||+.....  ....+..+|.++++...+. .+...+...+..+.+...  ..+.+++ +|.|+.|...  .....
T Consensus       157 ~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~--~~~~~  231 (298)
T 2oze_A          157 LIIIDTVPTPSVY--TNNAIVASDYVMIPLQAEE-ESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS--ATIKS  231 (298)
T ss_dssp             EEEEEECSSCSHH--HHHHHHHCSEEEEEECGGG-CCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC--HHHHH
T ss_pred             EEEEECCCCccHH--HHHHHHHCCeEEEEecCcH-HHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc--HHHHH
Confidence            4588999754332  2334456999999998643 344444443333332110  1346644 7889998642  12223


Q ss_pred             HHHHHHHHhC
Q psy785           79 QGASLARAFA   88 (112)
Q Consensus        79 ~~~~~~~~~~   88 (112)
                      ..+++.+.++
T Consensus       232 ~~~~~~~~~~  241 (298)
T 2oze_A          232 NLEELYKQHK  241 (298)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhc
Confidence            3444555554

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=87.23  E-value=0.97  Score=31.95  Aligned_cols=66  Identities=15%  Similarity=0.270  Sum_probs=34.2

Q ss_pred             ceEEeCCCcc-------------cchhhHHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCC
Q psy785            2 LEILDTAGTE-------------QFTAMRDLYMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKC   67 (112)
Q Consensus         2 ~~i~Dt~g~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~   67 (112)
                      +.+.|.||..             ....+...++.+..++++++-..+.+ .-.........+    ...+.+.++|.||.
T Consensus       149 LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v----~~~g~rtI~VlTK~  224 (608)
T 3szr_A          149 LTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEV----DPEGDRTIGILTKP  224 (608)
T ss_dssp             EEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHH----CSSCCSEEEEEECG
T ss_pred             eeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHH----hhcCCceEEEecch
Confidence            5688988622             12234555555554444444333322 111122222222    23567999999999


Q ss_pred             CCCC
Q psy785           68 DLEE   71 (112)
Q Consensus        68 D~~~   71 (112)
                      |+.+
T Consensus       225 Dlv~  228 (608)
T 3szr_A          225 DLVD  228 (608)
T ss_dssp             GGSS
T ss_pred             hhcC
Confidence            9864

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=86.46  E-value=5.8  Score=26.87  Aligned_cols=84  Identities=15%  Similarity=0.065  Sum_probs=45.3

Q ss_pred             ceEEeCCCcccch-hhHHh-----hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc
Q psy785            2 LEILDTAGTEQFT-AMRDL-----YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV   75 (112)
Q Consensus         2 ~~i~Dt~g~~~~~-~~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~   75 (112)
                      +-|+||||..... .+...     ..-.++.+++|+|.....   +.......+...   -+ ..-+|.||.|.....  
T Consensus       183 vVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~~a~~f~~~---l~-i~GVIlTKlD~~~~~--  253 (425)
T 2ffh_A          183 LILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDEK---VG-VTGLVLTKLDGDARG--  253 (425)
T ss_dssp             EEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH---TC-CCEEEEESGGGCSSC--
T ss_pred             EEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHHHHHHHHhc---CC-ceEEEEeCcCCcccH--
Confidence            4589999965332 11111     123689999999986432   111222222221   11 245678999864322  


Q ss_pred             cHHHHHHHHHHhCCcEEEeec
Q psy785           76 GKEQGASLARAFACTFLETSA   96 (112)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~Sa   96 (112)
                        ..........+.|+.+++.
T Consensus       254 --g~alsi~~~~g~PI~flg~  272 (425)
T 2ffh_A          254 --GAALSARHVTGKPIYFAGV  272 (425)
T ss_dssp             --HHHHHHHHHHCCCEEEEEC
T ss_pred             --HHHHHHHHHHCCCEEEEeC
Confidence              2333455667888877663

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=86.36  E-value=1.1  Score=28.21  Aligned_cols=43  Identities=14%  Similarity=0.118  Sum_probs=26.8

Q ss_pred             cCCEEEEEEeCCC-h-hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785           23 NGQGFILVYSITA-Q-STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE   72 (112)
Q Consensus        23 ~~d~~i~v~d~~~-~-~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~   72 (112)
                      .++++++++|... + +..+  ...+..+.+    . .++++|.+|+|....
T Consensus       111 Ral~~lllldep~~gL~~lD--~~~l~~L~~----~-~~vI~Vi~K~D~lt~  155 (270)
T 3sop_A          111 RVHCCLYFISPTGHSLRPLD--LEFMKHLSK----V-VNIIPVIAKADTMTL  155 (270)
T ss_dssp             SCCEEEEEECCCSSSCCHHH--HHHHHHHHT----T-SEEEEEETTGGGSCH
T ss_pred             eeeeeeEEEecCCCcCCHHH--HHHHHHHHh----c-CcEEEEEeccccCCH
Confidence            4688999999642 2 2222  122333332    2 899999999997653

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=85.82  E-value=0.54  Score=31.90  Aligned_cols=42  Identities=12%  Similarity=0.037  Sum_probs=23.9

Q ss_pred             CCCcEEEEeeCCCCCCcccccH--HHHHHHHHHhCCcEEEeecC
Q psy785           56 DDVPMVLVGNKCDLEEERVVGK--EQGASLARAFACTFLETSAK   97 (112)
Q Consensus        56 ~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~   97 (112)
                      .+.|+|+|.||+|.....+...  ..+.+.....|++++.+|..
T Consensus       175 ~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~  218 (427)
T 2qag_B          175 SKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD  218 (427)
T ss_dssp             SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred             hCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence            5689999999999875433211  11111122346777777753

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=82.39  E-value=1.8  Score=29.48  Aligned_cols=49  Identities=12%  Similarity=0.110  Sum_probs=32.6

Q ss_pred             ceEEeCCCccc--chhhH--------HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHh
Q psy785            2 LEILDTAGTEQ--FTAMR--------DLYMKNGQGFILVYSITAQSTFNDLSDLREQILR   51 (112)
Q Consensus         2 ~~i~Dt~g~~~--~~~~~--------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~   51 (112)
                      ..+||..|++.  ....+        ..++..+.+.++++|.++. +.+....|...+.+
T Consensus        89 ~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~  147 (469)
T 1bif_A           89 FEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQ  147 (469)
T ss_dssp             GGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred             ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence            35799999743  33333        4556678898999999887 44555566665554

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=81.28  E-value=3.7  Score=24.63  Aligned_cols=51  Identities=12%  Similarity=0.124  Sum_probs=35.0

Q ss_pred             chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCC
Q psy785           13 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKC   67 (112)
Q Consensus        13 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~   67 (112)
                      .....+..++++..+|+++......+-  --.|  +|....+..++|+|+|--..
T Consensus        69 IKrrLReRI~~Sk~vIllIs~~T~~s~--~v~w--EIe~Ai~~~~~PII~Vy~~~  119 (189)
T 3hyn_A           69 LKPRLHTRLDNSKNIILFLSSITANSR--ALRE--EMNYGIGTKGLPVIVIYPDY  119 (189)
T ss_dssp             HHHHHHHHHHTEEEEEEECCTTCCCCH--HHHH--HHHHHTTTTCCCEEEEETTC
T ss_pred             HHHHHHHHHHhcCcEEEEEecCccccc--hhHH--HHHHHHHhcCCcEEEEECCc
Confidence            345666678899999999987665542  2234  66665545789999887543

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=80.75  E-value=6.4  Score=25.09  Aligned_cols=63  Identities=16%  Similarity=0.043  Sum_probs=36.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~   70 (112)
                      +-|+|||+...... .......+|.+++|...... +...+...+..+.+.    +.+ .-+|.|+.|..
T Consensus       216 ~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~~-~~~~~~~~~~~l~~~----~~~~~GvVlN~~~~~  279 (299)
T 3cio_A          216 LVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLN-TAKEVSLSMQRLEQA----GVNIKGAILNGVIKR  279 (299)
T ss_dssp             EEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTTS-CTTHHHHHHHHHHHT----TCCCCCEEEEECCCC
T ss_pred             EEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCCC-hHHHHHHHHHHHHhC----CCCeEEEEEeCCccC
Confidence            45899997543221 22344679999999886432 333444444444442    233 23677999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	112
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	5e-19
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	4e-17
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	6e-17
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	8e-17
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	2e-16
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	4e-16
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	1e-15
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	2e-15
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	4e-15
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	5e-15
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	8e-15
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	2e-14
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	2e-14
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	3e-14
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	3e-14
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	6e-14
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	3e-13
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	3e-12
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	3e-12
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	6e-12
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	2e-11
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	3e-11
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	2e-10
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	3e-10
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	7e-10
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-09
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	2e-09
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	6e-09
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	8e-09
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	3e-08
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-08
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	8e-08
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	8e-08
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	1e-07
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	4e-07
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	1e-06
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	2e-06
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	5e-06
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	6e-06
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	6e-06
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	2e-05
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	2e-05
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	5e-05
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	6e-05
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	3e-04
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	3e-04
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	0.002

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.2 bits (184), Expect = 5e-19
 Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 1/100 (1%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F  +   Y +   G +LVY IT + +F+++ +    I     + DV  +
Sbjct: 57  LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNI-EEHASADVEKM 115

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           ++GNKCD+ ++R V KE+G  LA  +   F+ETSAKA +N
Sbjct: 116 ILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 155

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (170), Expect = 4e-17
 Identities = 57/96 (59%), Positives = 73/96 (76%)

Query: 6   DTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGN 65
           DTAGTEQF +MRDLY+KNGQGFILVYS+  Q +F D+  +R+QI+RVK  + VP++LVGN
Sbjct: 57  DTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGN 116

Query: 66  KCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           K DLE ER V   +G +LA  + C F+ETSAK+K  
Sbjct: 117 KVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTM 152

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (170), Expect = 6e-17
 Identities = 35/101 (34%), Positives = 60/101 (59%), Gaps = 1/101 (0%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
            L++ DTAG E+F ++   Y ++    +L+Y +T +++F+++     +I       DV +
Sbjct: 57  KLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVAL 115

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +L+GNK D   ERVV +E G  LA+ +   F+ETSAK  +N
Sbjct: 116 MLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLN 156

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (169), Expect = 8e-17
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 1/101 (0%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
             +I DTAG E++  +   Y +   G +LVY I    T+ ++    +++    D  ++ +
Sbjct: 54  KAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVI 112

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNK DL   R V  ++  + A     +F+ETSA    N
Sbjct: 113 MLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTN 153

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (166), Expect = 2e-16
 Identities = 37/99 (37%), Positives = 53/99 (53%), Gaps = 1/99 (1%)

Query: 3   EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62
           +I DTAG E+F A+   Y +   G ++VY IT +ST+N LS        + + +   ++L
Sbjct: 56  QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNT-VIIL 114

Query: 63  VGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +GNK DLE +R V  E+    A      FLE SAK   N
Sbjct: 115 IGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGEN 153

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (165), Expect = 4e-16
 Identities = 31/101 (30%), Positives = 58/101 (57%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
            L++ DTAG E+F ++   + ++  GF+L++ +T+Q +F ++ +   Q+      ++  +
Sbjct: 65  HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI 124

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           VL+GNK DL ++R V + Q   LA  +   + ETSA    N
Sbjct: 125 VLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQN 165

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (161), Expect = 1e-15
 Identities = 40/99 (40%), Positives = 57/99 (57%), Gaps = 1/99 (1%)

Query: 3   EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62
           +I DTAG E F ++   Y +   G +LVY IT + TFN L+   E   R   + ++ ++L
Sbjct: 55  QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDA-RQHSSSNMVIML 113

Query: 63  VGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +GNK DLE  R V +E+G + AR     F+ETSAK   N
Sbjct: 114 IGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACN 152

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 65.7 bits (159), Expect = 2e-15
 Identities = 45/95 (47%), Positives = 66/95 (69%)

Query: 7   TAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNK 66
           TAG E + A+RD Y ++G+GF+ V+SIT   +F   +D REQILRVK+ ++VP +LVGNK
Sbjct: 59  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 118

Query: 67  CDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
            DLE++R V  E+  + A  +   ++ETSAK + N
Sbjct: 119 SDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRAN 153

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.2 bits (158), Expect = 4e-15
 Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 2/100 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L+I DTAG E+F  +   Y +   G ILVY IT + TF ++     + +     D+  ++
Sbjct: 53  LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQ-WFKTVNEHANDEAQLL 111

Query: 62  LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           LVGNK D+ E RVV  +QG +LA+     F+E+SAK   N
Sbjct: 112 LVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDN 150

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (157), Expect = 5e-15
 Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 1/101 (0%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
            L+I DTAG E+F ++   Y ++    IL Y IT + +F  L +   +I +    + V  
Sbjct: 55  KLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS-NKVIT 113

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           VLVGNK DL E R V +++    + A    +LETSAK   N
Sbjct: 114 VLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDN 154

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.9 bits (157), Expect = 8e-15
 Identities = 41/101 (40%), Positives = 56/101 (55%), Gaps = 1/101 (0%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
            L+I DTAG E+F  +   Y +   G I+VY +T Q +FN +    ++I R   T  V  
Sbjct: 56  KLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDR-YATSTVLK 114

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNKCDL+++RVV  +     A A    FLETSA    N
Sbjct: 115 LLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTN 155

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (153), Expect = 2e-14
 Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 1/99 (1%)

Query: 3   EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62
           ++ DTAG E+F ++   Y+++    ++VY IT  ++F   +   + +   +   DV ++L
Sbjct: 52  QLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIML 110

Query: 63  VGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           VGNK DL ++R V  E+G   A+     F+ETSAKA  N
Sbjct: 111 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 149

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (152), Expect = 2e-14
 Identities = 53/101 (52%), Positives = 71/101 (70%), Gaps = 1/101 (0%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
           +L+ILDTAG E+++AMRD YM+ G+GF+ V++I    +F D+   REQI RVKD+DDVPM
Sbjct: 52  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           VLVGNKCD    R V   Q   LAR++   ++ETSAK +  
Sbjct: 112 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQG 151

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (152), Expect = 3e-14
 Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 1/101 (0%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
            L+I DTAG E+F ++   Y +   G +LVY IT++ T+N L++       +    ++ +
Sbjct: 55  KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVI 113

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +L GNK DL+ +R V   + +  A+     FLETSA    N
Sbjct: 114 ILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEN 154

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (152), Expect = 3e-14
 Identities = 37/101 (36%), Positives = 53/101 (52%), Gaps = 1/101 (0%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
            L I DTAG E+F  +   Y +  QG ILVY +T + TF  L +   ++      +D+  
Sbjct: 57  KLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVN 116

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNK D +E R V + +G   AR  +  F+E SAK    
Sbjct: 117 MLVGNKID-KENREVDRNEGLKFARKHSMLFIEASAKTCDG 156

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.8 bits (149), Expect = 6e-14
 Identities = 43/101 (42%), Positives = 60/101 (59%), Gaps = 1/101 (0%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
            L+I DTAG E++  +   Y +   GFIL+Y IT + +FN + D   QI +    D+  +
Sbjct: 55  KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI-KTYSWDNAQV 113

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +LVGNKCD+E+ERVV  E+G  LA      F E SAK  +N
Sbjct: 114 LLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNIN 154

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.0 bits (144), Expect = 3e-13
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 1/102 (0%)

Query: 1   MLEILDTAGTEQF-TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP 59
            +++ DTAG E+F  +M   Y +N    + VY +T  ++F+ L    E+  +    +D+P
Sbjct: 52  KIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP 111

Query: 60  MVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
            +LVGNKCDL     V  +     A   +    ETSAK   +
Sbjct: 112 RILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPND 153

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (138), Expect = 3e-12
 Identities = 45/95 (47%), Positives = 65/95 (68%)

Query: 7   TAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNK 66
           TAG E+F AMR+ YM+ G GF+LV++I  + +FN++  L  QILRVKD DD P+VLVGNK
Sbjct: 61  TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNK 120

Query: 67  CDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
            DLE +R V + + ++   +    + E SAK ++N
Sbjct: 121 ADLESQRQVPRSEASAFGASHHVAYFEASAKLRLN 155

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 3e-12
 Identities = 83/98 (84%), Positives = 91/98 (92%), Gaps = 1/98 (1%)

Query: 5   LDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVG 64
           LDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDT+DVPM+LVG
Sbjct: 56  LDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVG 115

Query: 65  NKCDLEEERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
           NKCDLE+ERVVGKEQG +LAR +  C FLE+SAK+K+N
Sbjct: 116 NKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKIN 153

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.0 bits (136), Expect = 6e-12
 Identities = 40/89 (44%), Positives = 60/89 (67%)

Query: 9   GTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68
           G E+F+AMR+ YM+ G GF++VYS+T +++F  +    + ILRVKD +  PM+LV NK D
Sbjct: 61  GQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVD 120

Query: 69  LEEERVVGKEQGASLARAFACTFLETSAK 97
           L   R V ++QG  +A  +   ++ETSAK
Sbjct: 121 LMHLRKVTRDQGKEMATKYNIPYIETSAK 149

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 2e-11
 Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 14/114 (12%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
            L + DTAG E +  +R L        ++ +S+ + ++F ++       +R     + P+
Sbjct: 54  NLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPI 112

Query: 61  VLVGNKCDLEEERVVGKE------------QGASLARAF-ACTFLETSAKAKVN 101
           +LVG K DL +++   ++            QG ++A+   A  +LE SA  +  
Sbjct: 113 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 166

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 3e-11
 Identities = 51/101 (50%), Positives = 75/101 (74%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
            L+ILDTAG E+F AMR+ YM+ G+GF+LV+S+T + +F ++   + QILRVKD D+ PM
Sbjct: 54  RLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPM 113

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +L+GNK DL+ +R V +E+G  LAR    T++E SAK ++N
Sbjct: 114 ILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMN 154

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 2e-10
 Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 3/102 (2%)

Query: 3   EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR---VKDTDDVP 59
           +I DTAG E+F ++R  + +     +L +S+    +F +LS+ +++ +    VK+ +  P
Sbjct: 58  QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP 117

Query: 60  MVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
            V++GNK D+ E +V  +E  A         + ETSAK   N
Sbjct: 118 FVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATN 159

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 3e-10
 Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 1/98 (1%)

Query: 4   ILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLV 63
           I DTAG E+F A+  +Y ++  G ILVY IT + +F  + +  +++ R    +++ + +V
Sbjct: 56  IWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL-RKMLGNEICLCIV 114

Query: 64  GNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           GNK DLE+ER V  ++  S A +       TSAK    
Sbjct: 115 GNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKG 152

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 7e-10
 Identities = 32/101 (31%), Positives = 57/101 (56%), Gaps = 1/101 (0%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
             EI DTAG E++ ++  +Y +  Q  I+VY IT + +F    +  +++ + + + ++ +
Sbjct: 56  KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL-QRQASPNIVI 114

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
            L GNK DL  +R V  ++  S A   +  F+ETSAK  +N
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 2e-09
 Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 8/110 (7%)

Query: 4   ILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLV 63
           + D  G ++   +   Y    QG I V     +   ++      +I+  ++  D  +++ 
Sbjct: 60  VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 119

Query: 64  GNKCDLEEERV---VGKEQGASLARAFACTFLETSAKAKVN-----SWLC 105
            NK DL +      + ++ G +  R        + A +        +WL 
Sbjct: 120 ANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 169

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (117), Expect = 2e-09
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 1/101 (0%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
              I DTAG E+F A+  +Y +     I+VY IT + TF+ L +   ++ R      + +
Sbjct: 54  KFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVREL-RQHGPPSIVV 112

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
            + GNKCDL + R V +      A +    F+ETSAK  +N
Sbjct: 113 AIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAIN 153

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 6e-09
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 14/114 (12%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
            L + DTAG E +  +R L       F++ +S+ + S+F ++ +     +        P 
Sbjct: 52  TLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT-HHCPKTPF 110

Query: 61  VLVGNKCDLEEERVV------------GKEQGASLARAF-ACTFLETSAKAKVN 101
           +LVG + DL ++                 E    LAR   A  ++E SA  +  
Sbjct: 111 LLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKG 164

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 8e-09
 Identities = 42/94 (44%), Positives = 59/94 (62%), Gaps = 1/94 (1%)

Query: 9   GTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK-DTDDVPMVLVGNKC 67
           G+ QF AM+ L +  G  FILVYSIT++ +  +L  + EQI  +K D + +P++LVGNKC
Sbjct: 59  GSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKC 118

Query: 68  DLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           D    R V   +  +LAR + C F+ETSAK   N
Sbjct: 119 DESPSREVQSSEAEALARTWKCAFMETSAKLNHN 152

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 3e-08
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 14/104 (13%)

Query: 11  EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70
           E +  +R L       F++ +S+   ++F ++ +     L+ +   +VP +L+G + DL 
Sbjct: 68  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK-EYAPNVPFLLIGTQIDLR 126

Query: 71  EERV------------VGKEQGASLARAF-ACTFLETSAKAKVN 101
           ++              +  EQG  LA+   AC ++E SA  +  
Sbjct: 127 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKG 170

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 3e-08
 Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 3/103 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
             + D  G ++   +   Y +N QG I V     +   N+  +   ++L   +  D  ++
Sbjct: 46  FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL 105

Query: 62  LVGNKC---DLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +  NK    +      +  + G    R        T A +   
Sbjct: 106 VFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG 148

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.8 bits (107), Expect = 8e-08
 Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 4/98 (4%)

Query: 7   TAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNK 66
           TAG E+F ++  +Y +N Q  ++VY +T   +F       +++   + + D+ + LVGNK
Sbjct: 59  TAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKEL-HEQASKDIIIALVGNK 117

Query: 67  CDL---EEERVVGKEQGASLARAFACTFLETSAKAKVN 101
            D+     ER V +E+G  LA      F ETSAK   N
Sbjct: 118 IDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGEN 155

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 45.7 bits (107), Expect = 8e-08
 Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 3/89 (3%)

Query: 16  MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER-- 73
               Y +N    I V     +  F +      ++L  +    VP+++  NK DL      
Sbjct: 76  YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA 135

Query: 74  -VVGKEQGASLARAFACTFLETSAKAKVN 101
             + +       R         SA     
Sbjct: 136 SEIAEGLNLHTIRDRVWQIQSCSALTGEG 164

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.4 bits (106), Expect = 1e-07
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 5/104 (4%)

Query: 3   EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR---VKDTDDVP 59
           ++ DTAG E+F ++   + +     +LVY +T  S+F ++   R++ L    V   +  P
Sbjct: 55  QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 114

Query: 60  MVLVGNKCDLEEERVVGKEQGASL--ARAFACTFLETSAKAKVN 101
            V++GNK D EE + +  E+ A              TSAK  +N
Sbjct: 115 FVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 158

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 43.8 bits (102), Expect = 4e-07
 Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 3/103 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
           L + D  G          Y  +    I V   T +   +  S     +L+ ++  D  ++
Sbjct: 63  LNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALL 122

Query: 62  LVGNKCDLE---EERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +  NK D         V KE      +  + + + +SA     
Sbjct: 123 VFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEG 165

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.7 bits (99), Expect = 1e-06
 Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 14/105 (13%)

Query: 11  EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70
             +  +R L   +    ++ + I+   T + +    +     +   +  M+LVG K DL 
Sbjct: 61  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE-IQEFCPNTKMLLVGCKSDLR 119

Query: 71  E------------ERVVGKEQGASLARAF-ACTFLETSAKAKVNS 102
                        +  V  +QGA++A+   A T++E SA    NS
Sbjct: 120 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENS 164

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (97), Expect = 2e-06
 Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 3/104 (2%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK---DTDD 57
            ++I DTAG E+F ++   + +     +LV+ +TA +TF  L   R++ L      D ++
Sbjct: 52  TMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPEN 111

Query: 58  VPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
            P V++GNK DLE  +V  K   A         + ETSAK  +N
Sbjct: 112 FPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAIN 155

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 5e-06
 Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 14/114 (12%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
            L + DTAG E +  +R L   +    ++ +SI +  +  ++ +     ++     +VP+
Sbjct: 51  ELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPI 109

Query: 61  VLVGNKCDLEEERVVGK------------EQGASLARAF-ACTFLETSAKAKVN 101
           +LVGNK DL  +    +            E+G  +A    A  ++E SAK K  
Sbjct: 110 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 163

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 6e-06
 Identities = 33/82 (40%), Positives = 50/82 (60%)

Query: 16  MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 75
            R+ +M+ G+GF+LVY IT + +F ++  L+  +  +K   +V ++LVGNK DL+  R V
Sbjct: 65  QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQV 124

Query: 76  GKEQGASLARAFACTFLETSAK 97
             E+G  LA   AC F E SA 
Sbjct: 125 STEEGEKLATELACAFYECSAC 146

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 6e-06
 Identities = 15/103 (14%), Positives = 35/103 (33%), Gaps = 3/103 (2%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
             + D  G E   +  + Y  N +  I+V   T +   +   +   ++L  +D     ++
Sbjct: 61  FLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLL 120

Query: 62  LVGNKCDLEE---ERVVGKEQGASLARAFACTFLETSAKAKVN 101
           +  NK D++E      + +    +  +          A     
Sbjct: 121 IFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEG 163

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (90), Expect = 2e-05
 Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 2/101 (1%)

Query: 1   MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
            L + DTAG E+F A+   Y +  Q  +LV+S T + +F  +S  RE+   V +  D+P 
Sbjct: 52  RLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREK--VVAEVGDIPT 109

Query: 61  VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
            LV NK DL ++  +  E+   LA+     F  TS K  +N
Sbjct: 110 ALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLN 150

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 2e-05
 Identities = 36/86 (41%), Positives = 55/86 (63%)

Query: 16  MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 75
           + D  M+ G  +++VYSIT +++F   S+LR Q+ R + T+D+P++LVGNK DL   R V
Sbjct: 70  LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREV 129

Query: 76  GKEQGASLARAFACTFLETSAKAKVN 101
              +G + A  F C F+ETSA  + N
Sbjct: 130 SVSEGRACAVVFDCKFIETSAAVQHN 155

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 5e-05
 Identities = 32/93 (34%), Positives = 55/93 (59%)

Query: 9   GTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68
           G ++++     Y  +  G+ILVYS+T+  +F  +  +  ++L +     +P++LVGNK D
Sbjct: 61  GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 120

Query: 69  LEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
           L  ERV+  E+G +LA ++   FLE+SAK    
Sbjct: 121 LHMERVISYEEGKALAESWNAAFLESSAKENQT 153

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 6e-05
 Identities = 36/86 (41%), Positives = 52/86 (60%)

Query: 16  MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 75
           +    M  G  +++VYS+T + +F   S+LR Q+ R + TDDVP++LVGNK DL   R V
Sbjct: 64  LPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREV 123

Query: 76  GKEQGASLARAFACTFLETSAKAKVN 101
             ++G + A  F C F+ETSA    N
Sbjct: 124 SVDEGRACAVVFDCKFIETSAALHHN 149

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 3e-04
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 51  RVKDTDDVPMVLVGNKCDLEE---ERVVGKEQGASLARAFACTFLETSAKAKVN 101
                  +P++++GNK DL     E+ + ++   S  +         S K K N
Sbjct: 98  DKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDN 151

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 3e-04
 Identities = 28/95 (29%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 7   TAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNK 66
           TAG E+F  +RD Y    Q  I+++ +T++ T+ ++ +    ++RV   +++P+VL GNK
Sbjct: 59  TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNK 116

Query: 67  CDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
            D+++ +V  K       R     + + SAK+  N
Sbjct: 117 VDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYN 149

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 34.0 bits (77), Expect = 0.002
 Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 10/88 (11%)

Query: 2   LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQST----------FNDLSDLREQILR 51
             + D  G             +    I V + ++ +             +  +L + I  
Sbjct: 49  FHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWN 108

Query: 52  VKDTDDVPMVLVGNKCDLEEERVVGKEQ 79
            +    + ++L  NK DL  E+V+  + 
Sbjct: 109 NRWLRTISVILFLNKQDLLAEKVLAGKS 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	112
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.97
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.97
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.96
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.96
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.96
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.95
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.95
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.95
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.95
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.95
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.95
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.94
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.94
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.93
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.92
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.92
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.92
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.91
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.91
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.91
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.91
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.91
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.86
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.78
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.77
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.76
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.76
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.7
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.7
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.69
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.65
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.64
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.64
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.63
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.6
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.6
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.59
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.59
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.58
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.55
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.52
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.5
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.46
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.46
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.45
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.38
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.35
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.22
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.19
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.19
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.18
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.17
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	99.12
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.1
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.09
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.07
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	99.06
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.85
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.68
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.56
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.49
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	98.3
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.01
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.7
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	97.52
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	97.34
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	97.34
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	97.29
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	96.68
d1vmaa2	213	GTPase domain of the signal recognition particle r	93.2
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	93.01
d1j8yf2	211	GTPase domain of the signal sequence recognition p	92.86
d1okkd2	207	GTPase domain of the signal recognition particle r	92.71
d2qy9a2	211	GTPase domain of the signal recognition particle r	92.52
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	90.36
d1ls1a2	207	GTPase domain of the signal sequence recognition p	90.17
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	89.8
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	89.54
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	85.29
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	82.6

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.1e-31  Score=157.91  Aligned_cols=110  Identities=35%  Similarity=0.532  Sum_probs=94.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||+|++++..++..+++++|++++|||++++.+++.+..|+..+........+|+++||||+|+...+.++..+++
T Consensus        50 l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~  129 (168)
T d2gjsa1          50 LMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGR  129 (168)
T ss_dssp             EEEEECC-------CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred             eeeeecccccccceecccchhhhhhhceeccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHH
Confidence            68999999999999999999999999999999999999999999999988766677999999999999887888889999


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++.+++++++|||++|.||+++|+.++.
T Consensus       130 ~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~  159 (168)
T d2gjsa1         130 ACAVVFDCKFIETSAALHHNVQALFEGVVR  159 (168)
T ss_dssp             HHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            999999999999999999999999998864

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=8.4e-30  Score=151.06  Aligned_cols=110  Identities=42%  Similarity=0.701  Sum_probs=102.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++||++|++++..+++.+++++|++++|||+++++|++.+..|+..+.+.....+.|++++|||+|+...+.++.+++.
T Consensus        54 ~~i~d~~g~~~~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~  133 (169)
T d1x1ra1          54 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGK  133 (169)
T ss_dssp             EEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHH
T ss_pred             ccccccccccccccchhhhhhhccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHH
Confidence            68999999999999999999999999999999999999999999999988776678999999999999888888899999


Q ss_pred             HHHHHhCCcEEEeecCCCC-ChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKV-NSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~-~v~~~~~~l~~  111 (112)
                      ++++++++++++|||+++. ||+++|+.+++
T Consensus       134 ~~~~~~~~~~~e~Sak~~~~nV~~~F~~l~~  164 (169)
T d1x1ra1         134 EMATKYNIPYIETSAKDPPLNVDKTFHDLVR  164 (169)
T ss_dssp             HHHHHHTCCEEEEBCSSSCBSHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEEcCCCCCcCHHHHHHHHHH
Confidence            9999999999999999875 99999998764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.97  E-value=6.4e-30  Score=151.47  Aligned_cols=110  Identities=44%  Similarity=0.703  Sum_probs=100.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++||++|++++..++..+++++|++++|||++++.+++.+..|+..+.+.....+.|+++||||+|+.+.+.++.++++
T Consensus        54 l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~  133 (168)
T d1u8za_          54 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAK  133 (168)
T ss_dssp             EEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHH
T ss_pred             ccccccccccchhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHH
Confidence            68999999999999999999999999999999999999999999999988776678999999999999887888899999


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++.+++++++|||++|.||+++|+++++
T Consensus       134 ~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~  163 (168)
T d1u8za_         134 NRADQWNVNYVETSAKTRANVDKVFFDLMR  163 (168)
T ss_dssp             HHHHHHTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHcCCeEEEEcCCCCcCHHHHHHHHHH
Confidence            999999999999999999999999998864

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.6e-30  Score=151.80  Aligned_cols=110  Identities=33%  Similarity=0.546  Sum_probs=103.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||+|++.+..++..+++++|++++|||+++++|++.+..|+..+.+.....++|+++|+||+|+...+.++.++++
T Consensus        54 l~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~  133 (167)
T d1xtqa1          54 LQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGK  133 (167)
T ss_dssp             EEEEECCCCCTTCCCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred             eeecccccccccccccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHH
Confidence            68999999999999999999999999999999999999999999999988777778999999999999887888899999


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++++++++++|||++|.||+++|+.++.
T Consensus       134 ~~a~~~~~~~~e~Sak~~~~v~~~f~~li~  163 (167)
T d1xtqa1         134 ALAESWNAAFLESSAKENQTAVDVFRRIIL  163 (167)
T ss_dssp             HHHHHHTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            999999999999999999999999998864

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=6.2e-30  Score=150.87  Aligned_cols=108  Identities=31%  Similarity=0.519  Sum_probs=100.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||+|++++..+++.++++++++++|||++++.|++.+..|+..+.+..  .++|+++||||+|+.+.+.++.++++
T Consensus        53 ~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~iilVgnK~Dl~~~~~v~~~~~~  130 (164)
T d1z2aa1          53 LMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAE  130 (164)
T ss_dssp             EEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHH
T ss_pred             eeeeccCCccchhhhhhhhhccCceEEEEEeccchhhhhhcccccccccccC--CCceEEEeeccCCcccceeeeehhhH
Confidence            6899999999999999999999999999999999999999999999998765  56999999999999887888888899


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++++++++++|||++|.||+++|+.+++
T Consensus       131 ~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~  160 (164)
T d1z2aa1         131 GLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  160 (164)
T ss_dssp             HHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             HHHHHcCCEEEEeccCCCcCHHHHHHHHHH
Confidence            999999999999999999999999999875

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-29  Score=150.87  Aligned_cols=110  Identities=45%  Similarity=0.745  Sum_probs=102.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||+|++++..++..++++++++++|||++++.|++.+..|+..+.+.....+.|+++||||+|+...+.....++.
T Consensus        56 l~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~  135 (173)
T d2fn4a1          56 LDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEAS  135 (173)
T ss_dssp             EEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHH
T ss_pred             eeccccccccccccccchhhccceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhh
Confidence            68999999999999999999999999999999999999999999999988766678999999999999877778888899


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+++.+++++++|||++|.||+++|+.+++
T Consensus       136 ~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~  165 (173)
T d2fn4a1         136 AFGASHHVAYFEASAKLRLNVDEAFEQLVR  165 (173)
T ss_dssp             HHHHHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            999999999999999999999999999864

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.3e-29  Score=150.23  Aligned_cols=110  Identities=41%  Similarity=0.673  Sum_probs=100.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCCCCCcccccHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      +++|||+|++.+...+..+++++|++++|||++++++++.+..|+..+.+.... .++|+++||||+|+...+.++.+++
T Consensus        52 l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~  131 (171)
T d2erxa1          52 LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEA  131 (171)
T ss_dssp             EEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHH
T ss_pred             eccccccccccccccccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHH
Confidence            678999999999999999999999999999999999999999999888775543 6789999999999987788888899


Q ss_pred             HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           81 ASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +++++.+++++++|||++|.||+++|+.+++
T Consensus       132 ~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~  162 (171)
T d2erxa1         132 EALARTWKCAFMETSAKLNHNVKELFQELLN  162 (171)
T ss_dssp             HHHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHcCCeEEEEcCCCCcCHHHHHHHHHH
Confidence            9999999999999999999999999998874

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-29  Score=152.28  Aligned_cols=110  Identities=31%  Similarity=0.533  Sum_probs=102.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||+|+++|..+++.+++++|++++|||++++.+++.+..|+..+..+......|+++|+||.|+.+.+.++.+++.
T Consensus        66 ~~i~dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~  145 (186)
T d2f7sa1          66 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAR  145 (186)
T ss_dssp             EEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHH
T ss_pred             eccccCCcchhhHHHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHH
Confidence            68999999999999999999999999999999999999999999988877665577899999999999888888899999


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++++++++++|||++|.||+++|+++++
T Consensus       146 ~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~  175 (186)
T d2f7sa1         146 ELADKYGIPYFETSAATGQNVEKAVETLLD  175 (186)
T ss_dssp             HHHHHTTCCEEEEBTTTTBTHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999874

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=5.8e-29  Score=147.33  Aligned_cols=109  Identities=41%  Similarity=0.670  Sum_probs=99.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..+++.+++++|++++|||+++++++..+..|+..+.... ....|+++++||+|+.+.+.++.++..
T Consensus        56 l~~wDt~G~e~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~v~~~~~~  134 (169)
T d3raba_          56 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGR  134 (169)
T ss_dssp             EEEEEECCSGGGHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHC-CSCCEEEEEEECTTCGGGCCSCHHHHH
T ss_pred             EEEEECCCchhhHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhccc-CCcceEEEEEeecccccccccchhhhH
Confidence            6899999999999999999999999999999999999999988887765543 457899999999999887788888899


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +++++.++++++|||++|.||+++|+++++
T Consensus       135 ~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~  164 (169)
T d3raba_         135 QLADHLGFEFFEASAKDNINVKQTFERLVD  164 (169)
T ss_dssp             HHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEecCCCCcCHHHHHHHHHH
Confidence            999999999999999999999999999874

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5e-29  Score=147.81  Aligned_cols=109  Identities=34%  Similarity=0.458  Sum_probs=99.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||+++|..+++.++++++++++|+|.+++.+++.+..|+..+.+.. ....|+++||||+|+.+...+..++++
T Consensus        56 l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ilvgnK~D~~~~~~v~~~~~~  134 (171)
T d2ew1a1          56 LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAE  134 (171)
T ss_dssp             EEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHH
T ss_pred             EEEEECCCchhhHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhcccc-cccccEEEEEeecccccccchhhhHHH
Confidence            6899999999999999999999999999999999999999999988887643 356899999999999877788888899


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+++.+++++++|||++|.||+++|..++.
T Consensus       135 ~~~~~~~~~~~~~SAktg~gV~e~f~~l~~  164 (171)
T d2ew1a1         135 EFSEAQDMYYLETSAKESDNVEKLFLDLAC  164 (171)
T ss_dssp             HHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHhCCCEEEEEccCCCCCHHHHHHHHHH
Confidence            999999999999999999999999988764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.7e-29  Score=148.46  Aligned_cols=110  Identities=55%  Similarity=0.855  Sum_probs=102.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++||++|++.+..++..++++++++++|||++++.+++.+..|+..+.......++|+++||||+|+...+....+++.
T Consensus        53 l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~  132 (167)
T d1kaoa_          53 LEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGR  132 (167)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHH
T ss_pred             eccccCCCccccccchHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHH
Confidence            68999999999999999999999999999999999999999999999887665578999999999999877788888899


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+++++++++++|||++|.||+++|+.++.
T Consensus       133 ~~~~~~~~~~~e~Sak~g~~i~e~f~~i~~  162 (167)
T d1kaoa_         133 ALAEEWGCPFMETSAKSKTMVDELFAEIVR  162 (167)
T ss_dssp             HHHHHHTSCEEEECTTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCeEEEECCCCCcCHHHHHHHHHH
Confidence            999999999999999999999999999864

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.3e-29  Score=146.91  Aligned_cols=109  Identities=31%  Similarity=0.470  Sum_probs=93.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||+|++++..+++.+++++|++++|||+++++|++.+..|+..+.... ....|++++|||+|+...+.++.++++
T Consensus        54 ~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~v~~~e~~  132 (167)
T d1z08a1          54 LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAE  132 (167)
T ss_dssp             EEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHH
T ss_pred             eeeeccCCcceecccchhhccCCceeEEEEeCCchhHHHhhhhhhhhccccc-ccccceeeeccccccccccccchHHHH
Confidence            6899999999999999999999999999999999999999999988776543 256789999999999888888899999


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++++++++++|||++|.||+++|++|++
T Consensus       133 ~~a~~~~~~~~e~Sak~~~~v~e~F~~l~~  162 (167)
T d1z08a1         133 SYAESVGAKHYHTSAKQNKGIEELFLDLCK  162 (167)
T ss_dssp             HHHHHTTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHcCCeEEEEecCCCcCHHHHHHHHHH
Confidence            999999999999999999999999998864

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-28  Score=145.75  Aligned_cols=110  Identities=78%  Similarity=1.108  Sum_probs=101.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++||++|++.+..+++.+++++|+++++||++++.|++.+..|+..+.+.....++|+++||||+|+........++..
T Consensus        53 ~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~  132 (167)
T d1c1ya_          53 LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQ  132 (167)
T ss_dssp             EEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred             eccccccCcccccccccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHH
Confidence            68999999999999999999999999999999999999999999999988766678999999999999887788888888


Q ss_pred             HHHHHh-CCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAF-ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~-~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+++++ ++++++|||++|.||+++|++++.
T Consensus       133 ~~~~~~~~~~~~e~Sak~g~gv~e~F~~l~~  163 (167)
T d1c1ya_         133 NLARQWCNCAFLESSAKSKINVNEIFYDLVR  163 (167)
T ss_dssp             HHHHHTTSCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHhCCCEEEEEcCCCCcCHHHHHHHHHH
Confidence            888774 689999999999999999998864

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.8e-28  Score=144.58  Aligned_cols=110  Identities=46%  Similarity=0.803  Sum_probs=98.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++||++|++.+...+..+++++|++++|||.++++|++.+..|+..+.+.......|+++|+||+|+...+.+..+++.
T Consensus        55 ~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~  134 (171)
T d2erya1          55 LDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQ  134 (171)
T ss_dssp             EEEEECC----CCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHH
T ss_pred             cccccccccccccccccccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHH
Confidence            68999999999999999999999999999999999999999999998888766678999999999999877888889999


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++.+++++++|||++|.||+++|+.+++
T Consensus       135 ~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~  164 (171)
T d2erya1         135 QLARQLKVTYMEASAKIRMNVDQAFHELVR  164 (171)
T ss_dssp             HHHHHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEEcCCCCcCHHHHHHHHHH
Confidence            999999999999999999999999998864

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=3.1e-28  Score=143.91  Aligned_cols=109  Identities=30%  Similarity=0.459  Sum_probs=100.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||+|++++..++..+++++++++++||++++++++.+..|+..+.... ....|+++|+||+|+...+.+..++++
T Consensus        55 ~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~  133 (167)
T d1z0ja1          55 FLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG-PPSIVVAIAGNKCDLTDVREVMERDAK  133 (167)
T ss_dssp             EEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTSEEEEEEECTTCGGGCCSCHHHHH
T ss_pred             eeeeecCCchhhhHHHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhcc-CCcceEEEecccchhccccchhHHHHH
Confidence            5799999999999999999999999999999999999999999988876653 467899999999999877888889999


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++.+++++++|||++|.||+++|.++++
T Consensus       134 ~~~~~~~~~~~e~SAk~~~nV~e~f~~l~~  163 (167)
T d1z0ja1         134 DYADSIHAIFVETSAKNAININELFIEISR  163 (167)
T ss_dssp             HHHHHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999864

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.1e-28  Score=143.44  Aligned_cols=109  Identities=32%  Similarity=0.505  Sum_probs=100.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||+|++++...+..+++++++++++||++++.+++.+..|+..+..... .+.|+++||||.|+.+.+....++..
T Consensus        51 ~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~-~~~~iilvgnK~Dl~~~~~~~~~~~~  129 (164)
T d1yzqa1          51 LQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGE  129 (164)
T ss_dssp             EEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHH
T ss_pred             eeecccCCcchhccchHHHhhccceEEEeeccccccchhhhHhhHHHHHHhcC-CCceEEEEecccchhhhhhhhHHHHH
Confidence            68999999999999999999999999999999999999999999998876543 57899999999999877778888999


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++++++++++|||++|.||+++|++++.
T Consensus       130 ~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~  159 (164)
T d1yzqa1         130 RKAKELNVMFIETSAKAGYNVKQLFRRVAA  159 (164)
T ss_dssp             HHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEecCCCCcCHHHHHHHHHH
Confidence            999999999999999999999999999864

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.7e-28  Score=143.41  Aligned_cols=109  Identities=35%  Similarity=0.475  Sum_probs=99.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..+++++|++++|||+++.+|++.+..|+..+.+.. ....|+++++||+|+........++++
T Consensus        55 l~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~~~~~~~~  133 (166)
T d1z0fa1          55 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAK  133 (166)
T ss_dssp             EEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHH
T ss_pred             EEEeccCCchhHHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhc-cccceEEEEcccccchhhcccHHHHHH
Confidence            6899999999999999999999999999999999999999999998886643 467899999999999877778888899


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+++++++++++|||++|.||+++|+.+++
T Consensus       134 ~~~~~~~~~~~e~Saktg~~v~e~f~~i~~  163 (166)
T d1z0fa1         134 QFAEENGLLFLEASAKTGENVEDAFLEAAK  163 (166)
T ss_dssp             HHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999998864

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.7e-28  Score=144.35  Aligned_cols=109  Identities=39%  Similarity=0.581  Sum_probs=97.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||+|++.+. ....++++++++++|||++++++++.+..|+..+.......+.|+++||||+|+.+.+.++.++++
T Consensus        52 l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~  130 (168)
T d2atva1          52 MEILDTAGQEDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGE  130 (168)
T ss_dssp             EEEEECCCCCCCH-HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHH
T ss_pred             EEEeecccccccc-cchhhhcccccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHH
Confidence            7899999998875 566789999999999999999999999988777766666678999999999999877788899999


Q ss_pred             HHHHHhCCcEEEeecCCCC-ChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKV-NSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~-~v~~~~~~l~~  111 (112)
                      ++++++++++++|||++|. ||+++|..+++
T Consensus       131 ~~a~~~~~~~~e~Saktg~gnV~e~F~~l~~  161 (168)
T d2atva1         131 KLATELACAFYECSACTGEGNITEIFYELCR  161 (168)
T ss_dssp             HHHHHHTSEEEECCTTTCTTCHHHHHHHHHH
T ss_pred             HHHHHhCCeEEEEccccCCcCHHHHHHHHHH
Confidence            9999999999999999998 59999998864

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7.6e-28  Score=142.55  Aligned_cols=109  Identities=30%  Similarity=0.470  Sum_probs=100.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||+|++++..+++.++++++++++++|.++.++++.+..|...+.+.. ..+.|+++|+||+|+...+.++.+.++
T Consensus        57 ~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~e~~~  135 (170)
T d1r2qa_          57 FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQ  135 (170)
T ss_dssp             EEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHH
T ss_pred             EEeccCCCchhhhhhHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhcc-CCCceEEeecccccccccccccHHHHH
Confidence            6899999999999999999999999999999999999999999988886643 467999999999999887888899999


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++.+++++++|||++|.||+++|+.|++
T Consensus       136 ~~~~~~~~~~~e~SAk~g~~V~e~f~~l~~  165 (170)
T d1r2qa_         136 SYADDNSLLFMETSAKTSMNVNEIFMAIAK  165 (170)
T ss_dssp             HHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHhcCCEEEEeeCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999875

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.4e-28  Score=146.08  Aligned_cols=108  Identities=37%  Similarity=0.620  Sum_probs=94.9

Q ss_pred             ceEEeC---CCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHH
Q psy785            2 LEILDT---AGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKE   78 (112)
Q Consensus         2 ~~i~Dt---~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~   78 (112)
                      +.+||+   +|++++  ++..+++++|++++|||++++.+++.+..|+..+.......++|+++|+||+|+...+.++.+
T Consensus        55 ~~~~d~~~~~g~e~~--~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~  132 (172)
T d2g3ya1          55 IILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVS  132 (172)
T ss_dssp             EEEECCTTTTHHHHH--HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHH
T ss_pred             eeeeccccccccccc--cccccccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHH
Confidence            456665   466655  567789999999999999999999999999999887665578999999999999887888888


Q ss_pred             HHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           79 QGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        79 ~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++++..+++++++|||++|.||+++|+.++.
T Consensus       133 ~~~~~a~~~~~~~~e~Sak~g~~i~~~f~~l~~  165 (172)
T d2g3ya1         133 EGRACAVVFDCKFIETSAAVQHNVKELFEGIVR  165 (172)
T ss_dssp             HHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHHHcCCeEEEEeCCCCcCHHHHHHHHHH
Confidence            999999999999999999999999999999864

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.8e-28  Score=144.09  Aligned_cols=109  Identities=26%  Similarity=0.454  Sum_probs=93.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC----------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE----------   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~----------   71 (112)
                      +++|||+|++.+..++..+++++|++++|||+++++||+.+..|.....+.. ..+.|+++|+||+|+.+          
T Consensus        59 l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~  137 (185)
T d2atxa1          59 LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLND  137 (185)
T ss_dssp             EEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTT
T ss_pred             eecccccccchhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhh
Confidence            6899999999999999999999999999999999999998765444444433 35799999999999864          


Q ss_pred             --cccccHHHHHHHHHHhC-CcEEEeecCCCCChhHHhhhhcc
Q psy785           72 --ERVVGKEQGASLARAFA-CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        72 --~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                        .+.++.+++.+++++++ ++++||||++|.||+++|+.++.
T Consensus       138 ~~~r~v~~~~~~~~a~~~~~~~~~E~SAk~~~gv~e~F~~li~  180 (185)
T d2atxa1         138 MKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII  180 (185)
T ss_dssp             TTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHH
Confidence              34677888889999887 69999999999999999998763

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.5e-27  Score=141.69  Aligned_cols=109  Identities=31%  Similarity=0.445  Sum_probs=100.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..+++.++++++++++|+|.++++++..+..|+..+.... ..++|+++++||+|+............
T Consensus        56 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~  134 (174)
T d2bmea1          56 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEAS  134 (174)
T ss_dssp             EEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHH
T ss_pred             EEEEECCCchhhhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhccccccc-CCceEEEEEEecccccchhchhhhHHH
Confidence            6899999999999999999999999999999999999999999999987754 357999999999999877778788888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++.+++++++|||++|.|++++|+++.+
T Consensus       135 ~~~~~~~~~~~e~Sak~~~gi~e~f~~l~~  164 (174)
T d2bmea1         135 RFAQENELMFLETSALTGENVEEAFVQCAR  164 (174)
T ss_dssp             HHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHhCCCEEEEeeCCCCcCHHHHHHHHHH
Confidence            999999999999999999999999988764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.4e-27  Score=142.20  Aligned_cols=109  Identities=27%  Similarity=0.447  Sum_probs=93.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc---------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE---------   72 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~---------   72 (112)
                      +++|||+|++.+..+++.+++++|++++|||+++++||+.+..|........ .++.|+++++||+|+.+.         
T Consensus        52 l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~  130 (177)
T d1kmqa_          52 LALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAK  130 (177)
T ss_dssp             EEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECGGGTTCHHHHHHHHH
T ss_pred             eeccccCccchhcccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHh-CCCCceEEeeecccccchhhHHHHHHH
Confidence            7899999999999999999999999999999999999998877555544433 257999999999998642         


Q ss_pred             ---ccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           73 ---RVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        73 ---~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                         +.++.++...++++++. ++++|||++|.||+++|+.++.
T Consensus       131 ~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~~gi~e~F~~i~~  173 (177)
T d1kmqa_         131 MKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR  173 (177)
T ss_dssp             TTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             hhcccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHH
Confidence               34667788889998884 8999999999999999998763

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.2e-27  Score=139.36  Aligned_cols=109  Identities=50%  Similarity=0.805  Sum_probs=100.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+||++|++.+...+..++++++++++|+|++++.+++.+..|+..+.+.....++|+++|+||+|+.. +.+..++++
T Consensus        53 l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~  131 (166)
T d1ctqa_          53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQ  131 (166)
T ss_dssp             EEEEEECCCGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC-CCSCHHHHH
T ss_pred             eeeeeccCccccccchhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc-ccccHHHHH
Confidence            6899999999999999999999999999999999999999999999999887667899999999999864 566788889


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++.+++++++|||++|.||+++|..+++
T Consensus       132 ~~~~~~~~~~~e~Sak~g~gi~e~f~~i~~  161 (166)
T d1ctqa_         132 DLARSYGIPYIETSAKTRQGVEDAFYTLVR  161 (166)
T ss_dssp             HHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHhCCeEEEEcCCCCcCHHHHHHHHHH
Confidence            999999999999999999999999988764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.1e-27  Score=140.66  Aligned_cols=110  Identities=33%  Similarity=0.597  Sum_probs=92.6

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      ++++|||||++++..++..+++++|++++|+|.+++.+++.+..|+..+.... ....|+++++||.|+.....++.+++
T Consensus        57 ~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~~k~d~~~~~~v~~~~~  135 (170)
T d2g6ba1          57 KLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDG  135 (170)
T ss_dssp             EEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHH
T ss_pred             EEEEEECCCchhhHHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhcc-CCCceEEEEEeeechhhcccccHHHH
Confidence            36899999999999999999999999999999999999999999888776654 35689999999999988888888899


Q ss_pred             HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           81 ASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++++.+++++++|||++|.||+++|++++.
T Consensus       136 ~~~~~~~~~~~~e~Sak~g~gi~e~f~~l~~  166 (170)
T d2g6ba1         136 EKLAKEYGLPFMETSAKTGLNVDLAFTAIAK  166 (170)
T ss_dssp             HHHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            9999999999999999999999999999864

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.6e-28  Score=145.65  Aligned_cols=106  Identities=26%  Similarity=0.475  Sum_probs=94.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||+|++.+..+++.++++++++++|||+++++|++.+..|+..+.+..  .++|+++||||+|+......  .+..
T Consensus        54 l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~--~~~~  129 (170)
T d1i2ma_          54 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVK--AKSI  129 (170)
T ss_dssp             EEEEECTTHHHHSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHH--CSCCEEEEEECCCCSCSCCT--TTSH
T ss_pred             ccccccccccccceecchhcccccchhhccccccccccchhHHHHHHHhhcc--CCCceeeecchhhhhhhhhh--hHHH
Confidence            7899999999999999999999999999999999999999999999988765  57999999999999764432  3445


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++...++++++|||++|.||+++|++|++
T Consensus       130 ~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~  159 (170)
T d1i2ma_         130 VFHRKKNLQYYDISAKSNYNFEKPFLWLAR  159 (170)
T ss_dssp             HHHSSCSSEEEEEBTTTTBTTTHHHHHHHH
T ss_pred             HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            677778999999999999999999999864

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.5e-27  Score=140.70  Aligned_cols=109  Identities=38%  Similarity=0.562  Sum_probs=100.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+||++|++.+..+++.+++++|++++|+|++++.+++.+..|+..+.+.. ..++|+++|+||+|+...+....++..
T Consensus        54 ~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~  132 (173)
T d2a5ja1          54 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGE  132 (173)
T ss_dssp             EEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHH
T ss_pred             EEeecccCccchhhHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhC-CCCCeEEEEecCCchhhhhhhHHHHHH
Confidence            6899999999999999999999999999999999999999999998887653 367899999999999877788888999


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+++++++++++|||++|.||+++|+.+++
T Consensus       133 ~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~~  162 (173)
T d2a5ja1         133 AFAREHGLIFMETSAKTACNVEEAFINTAK  162 (173)
T ss_dssp             HHHHHHTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999998764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=6.8e-27  Score=137.66  Aligned_cols=109  Identities=29%  Similarity=0.456  Sum_probs=98.0

Q ss_pred             ceEEeCCCcccch-hhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            2 LEILDTAGTEQFT-AMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         2 ~~i~Dt~g~~~~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      +.+||++|...+. ..++.+++++|++++|||++++++++.+..|+..+.++....+.|+++||||+|+.+.+.++.+++
T Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~  132 (165)
T d1z06a1          53 IQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLA  132 (165)
T ss_dssp             EEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHH
T ss_pred             EEEEeccCchhhccccceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHH
Confidence            5799999988765 457788999999999999999999999999999998877667899999999999988778889999


Q ss_pred             HHHHHHhCCcEEEeecCC---CCChhHHhhhhc
Q psy785           81 ASLARAFACTFLETSAKA---KVNSWLCVECTN  110 (112)
Q Consensus        81 ~~~~~~~~~~~~~~Sa~~---~~~v~~~~~~l~  110 (112)
                      +++++++++++++|||++   +.||+++|++|+
T Consensus       133 ~~~~~~~~~~~~e~SAkt~~~~~~V~e~F~~lA  165 (165)
T d1z06a1         133 QKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA  165 (165)
T ss_dssp             HHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC
T ss_pred             HHHHHHCCCEEEEEecccCCcCcCHHHHHHHhC
Confidence            999999999999999997   459999999874

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=3.9e-27  Score=139.87  Aligned_cols=109  Identities=36%  Similarity=0.606  Sum_probs=85.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++.+..++..+++++|++++|||++++.|++.+..|...+... ...+.|+++|+||.|+...+....+++.
T Consensus        57 l~i~D~~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~~k~D~~~~~~~~~~~~~  135 (173)
T d2fu5c1          57 LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGE  135 (173)
T ss_dssp             EEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHH
T ss_pred             EEEEECCCchhhHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhh-ccCCceEEEEEecccchhhcccHHHHHH
Confidence            689999999999999999999999999999999999999999998888654 3467999999999999887777778888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .++...++++++|||++|.||+++|+++++
T Consensus       136 ~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~~  165 (173)
T d2fu5c1         136 KLALDYGIKFMETSAKANINVENAFFTLAR  165 (173)
T ss_dssp             HHHHHHTCEEEECCC---CCHHHHHHHHHH
T ss_pred             HHHHhcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            899999999999999999999999999874

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.8e-27  Score=140.15  Aligned_cols=109  Identities=28%  Similarity=0.433  Sum_probs=98.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||+|+++|..++..++++++++++|||.++++|++.+..|+..+.++.. .++|+++||||+|+.+.+....+...
T Consensus        55 ~~i~d~~g~e~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~  133 (175)
T d2f9la1          55 AQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLRHLRAVPTDEAR  133 (175)
T ss_dssp             EEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHH
T ss_pred             EEecccCCcHHHHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcC-CCCcEEEEEeeecccccccchHHHHH
Confidence            68999999999999999999999999999999999999999999999877653 57899999999999876667777777


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+.+.++.++++|||++|.|++++|+.+++
T Consensus       134 ~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~~  163 (175)
T d2f9la1         134 AFAEKNNLSFIETSALDSTNVEEAFKNILT  163 (175)
T ss_dssp             HHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HhhcccCceEEEEecCCCcCHHHHHHHHHH
Confidence            888888999999999999999999998764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6.4e-27  Score=138.93  Aligned_cols=110  Identities=28%  Similarity=0.519  Sum_probs=87.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC---CCCcEEEEeeCCCCCCc-ccccH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT---DDVPMVLVGNKCDLEEE-RVVGK   77 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ivv~nK~D~~~~-~~~~~   77 (112)
                      +.+|||+|++++...+..+++.+++++++||++++.|++.+..|+.++......   ..+|+++++||+|+.+. +.++.
T Consensus        54 ~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~  133 (175)
T d1ky3a_          54 MQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSE  133 (175)
T ss_dssp             EEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCH
T ss_pred             ceeeccCCchhhhhHHHHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhH
Confidence            689999999999999999999999999999999999999999999998776543   46899999999999764 34677


Q ss_pred             HHHHHHHHHhC-CcEEEeecCCCCChhHHhhhhcc
Q psy785           78 EQGASLARAFA-CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        78 ~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++.+++++.++ +++++|||++|.||+++|+++++
T Consensus       134 ~~~~~~~~~~~~~~~~e~SA~~g~gv~e~f~~l~~  168 (175)
T d1ky3a_         134 KSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIAR  168 (175)
T ss_dssp             HHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHH
Confidence            78888998886 69999999999999999998764

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1e-26  Score=140.27  Aligned_cols=109  Identities=38%  Similarity=0.530  Sum_probs=99.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..++++++++++|||+++++++..+..|...+.+.. ....|+++++||.|+.+...+..++..
T Consensus        57 l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~  135 (194)
T d2bcgy1          57 LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAK  135 (194)
T ss_dssp             EEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHH
T ss_pred             EEEEECCCchhhHHHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcc-cCCceEEEEEeccccccccchhHHHHh
Confidence            6899999999999999999999999999999999999999998888876543 467899999999999888888888889


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+++..+++++++||++|.||+++|+.+++
T Consensus       136 ~~~~~~~~~~~e~SAk~g~gi~e~f~~l~~  165 (194)
T d2bcgy1         136 EFADANKMPFLETSALDSTNVEDAFLTMAR  165 (194)
T ss_dssp             HHHHHTTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             hhhhccCcceEEEecCcCccHHHHHHHHHH
Confidence            999999999999999999999999998864

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.9e-26  Score=135.09  Aligned_cols=110  Identities=33%  Similarity=0.493  Sum_probs=98.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC---cccccHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE---ERVVGKE   78 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~---~~~~~~~   78 (112)
                      +++|||+|++++..+++.+++++|++++|||.+++.|++.+..|+..+.... ....|+++++||.|+.+   .+.+..+
T Consensus        54 l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~v~nk~d~~~~~~~~~v~~~  132 (170)
T d1ek0a_          54 FEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDMLQEGGERKVARE  132 (170)
T ss_dssp             EEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHH
T ss_pred             ccccccCCchhHHHHHHHHHhccceEEEEEeCCcccchhhhhhhhhhhcccc-ccccceeeeecccccccccchhhhhHH
Confidence            7899999999999999999999999999999999999999999988766643 35689999999999853   3677888


Q ss_pred             HHHHHHHHhCCcEEEeecCCCCChhHHhhhhccC
Q psy785           79 QGASLARAFACTFLETSAKAKVNSWLCVECTNDQ  112 (112)
Q Consensus        79 ~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~  112 (112)
                      ++.++++..++++++|||++|.||+++|+.++++
T Consensus       133 ~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~i~~~  166 (170)
T d1ek0a_         133 EGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEK  166 (170)
T ss_dssp             HHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHH
Confidence            8999999999999999999999999999998753

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.9e-26  Score=137.27  Aligned_cols=109  Identities=35%  Similarity=0.504  Sum_probs=100.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||||++++..+++.+++++|++++|+|++++.+++.+..|+..+.+.......|+++++||.|..+ +.+...+..
T Consensus        58 ~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~-~~v~~~~~~  136 (177)
T d1x3sa1          58 LAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGL  136 (177)
T ss_dssp             EEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHH
T ss_pred             EEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeecccccc-ccccHHHHH
Confidence            6899999999999999999999999999999999999999999999998776667789999999999754 667788889


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +++++++++++++||++|.||+++|+++++
T Consensus       137 ~~~~~~~~~~~e~Sa~tg~gv~e~f~~l~~  166 (177)
T d1x3sa1         137 KFARKHSMLFIEASAKTCDGVQCAFEELVE  166 (177)
T ss_dssp             HHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999998864

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.6e-26  Score=138.15  Aligned_cols=108  Identities=24%  Similarity=0.422  Sum_probs=92.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc---------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE---------   72 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~---------   72 (112)
                      +++|||+|+++|..++..+++++|++++|||+++++||+.+..|........ ..+.|+++|+||+|+.+.         
T Consensus        53 l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~i~lvgnK~Dl~~~~~~~~~~~~  131 (191)
T d2ngra_          53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRDDPSTIEKLAK  131 (191)
T ss_dssp             EEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-CTTCCEEEEEECGGGGGCHHHHHHHHT
T ss_pred             eeccccccchhhhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhhc-CCCCceEEEeccccccccchhhhhhhh
Confidence            7899999999999999999999999999999999999999987554444432 357999999999998532         


Q ss_pred             ---ccccHHHHHHHHHHh-CCcEEEeecCCCCChhHHhhhhc
Q psy785           73 ---RVVGKEQGASLARAF-ACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        73 ---~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                         ..+..++++++++++ ++++++|||++|.||+++|+.++
T Consensus       132 ~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~V~e~f~~l~  173 (191)
T d2ngra_         132 NKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI  173 (191)
T ss_dssp             TTCCCCCHHHHHHHHHHTTCSCEEECCTTTCTTHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHH
Confidence               347788888999886 47999999999999999998775

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.5e-25  Score=131.41  Aligned_cols=109  Identities=29%  Similarity=0.529  Sum_probs=97.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC---CCCcEEEEeeCCCCCCcccccHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT---DDVPMVLVGNKCDLEEERVVGKE   78 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~   78 (112)
                      +++||++|+.++...+..++..++++++++|.+++.|++.+..|++.+.+....   .+.|+++||||+|+.+ +.+..+
T Consensus        57 ~~i~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v~~~  135 (174)
T d1wmsa_          57 MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTE  135 (174)
T ss_dssp             EEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHH
T ss_pred             EeeecccCcceehhhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh-ccCcHH
Confidence            579999999999999999999999999999999999999999999888765433   4689999999999965 567788


Q ss_pred             HHHHHHHHhC-CcEEEeecCCCCChhHHhhhhcc
Q psy785           79 QGASLARAFA-CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        79 ~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++++++++.+ +++++|||++|.||+++|+.+++
T Consensus       136 ~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~  169 (174)
T d1wmsa_         136 EAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVR  169 (174)
T ss_dssp             HHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCeEEEEcCCCCcCHHHHHHHHHH
Confidence            8999998864 79999999999999999988764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.7e-25  Score=133.44  Aligned_cols=108  Identities=22%  Similarity=0.368  Sum_probs=91.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC----------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE----------   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~----------   71 (112)
                      +++||++|++.+...++.+++++|++++|||+++++||+.+..|........ ..+.|+++||||+|+..          
T Consensus        52 ~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~iilVgnK~Dl~~~~~~~~~~~~  130 (179)
T d1m7ba_          52 LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGCKSDLRTDVSTLVELSN  130 (179)
T ss_dssp             EEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-CTTCEEEEEEECGGGGGCHHHHHHHHT
T ss_pred             eccccccccccccccccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhcc-CCcceEEEEEecccccccchhhHHHhh
Confidence            6899999999999999999999999999999999999999877554443332 25799999999999853          


Q ss_pred             --cccccHHHHHHHHHHhCC-cEEEeecCCCC-ChhHHhhhhc
Q psy785           72 --ERVVGKEQGASLARAFAC-TFLETSAKAKV-NSWLCVECTN  110 (112)
Q Consensus        72 --~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~-~v~~~~~~l~  110 (112)
                        .+.++.++...++++.+. +++||||++|. +++++|+.++
T Consensus       131 ~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~~n~i~~~F~~~~  173 (179)
T d1m7ba_         131 HRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVAT  173 (179)
T ss_dssp             TTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHH
T ss_pred             hhcCcchHHHHHHHHHHhCCCeEEEEeCCCCCcCHHHHHHHHH
Confidence              245778888899988874 89999999998 4999999875

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.5e-25  Score=133.95  Aligned_cols=108  Identities=22%  Similarity=0.406  Sum_probs=90.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHH-HHHHHHhhcCCCCCcEEEEeeCCCCCCcc-------
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLEEER-------   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ivv~nK~D~~~~~-------   73 (112)
                      +++||++|++.+..++..+++++|++++|||+++++||+.+.. |...+..+  ..+.|+++|+||+|+.+.+       
T Consensus        55 ~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~  132 (183)
T d1mh1a_          55 LGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLK  132 (183)
T ss_dssp             EEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTSCEEEEEECHHHHTCHHHHHHHH
T ss_pred             EEeecccccccchhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHh--CCCCcEEEEeecccchhhhhhhhhhh
Confidence            6899999999999999999999999999999999999999876 55444443  3578999999999985432       


Q ss_pred             -----cccHHHHHHHHHHhC-CcEEEeecCCCCChhHHhhhhcc
Q psy785           74 -----VVGKEQGASLARAFA-CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 -----~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                           .....+...++++++ ++++||||++|.||+++|+.++.
T Consensus       133 ~~~~~~~~~~~~~~~a~~~~~~~~~E~SAk~~~~V~e~F~~l~~  176 (183)
T d1mh1a_         133 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR  176 (183)
T ss_dssp             HTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             hccccchhhHHHHHHHHHcCCceEEEcCCCCCcCHHHHHHHHHH
Confidence                 244556777888776 69999999999999999998764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=3.7e-25  Score=130.38  Aligned_cols=108  Identities=36%  Similarity=0.567  Sum_probs=95.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++|||||++++..++..++++++++++|||.+++.+++.+..|+..+.... ....|++++++|.|+.+ +....++.+
T Consensus        53 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~i~~~~k~d~~~-~~~~~~~~~  130 (166)
T d1g16a_          53 LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMET-RVVTADQGE  130 (166)
T ss_dssp             EEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTT-CCSCHHHHH
T ss_pred             EEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccc-cCcceeeeecchhhhhh-hhhhHHHHH
Confidence            6789999999999999999999999999999999999999988887776653 35688999999999865 445677888


Q ss_pred             HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +++..+++++++|||++|.||+++|++|++
T Consensus       131 ~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~  160 (166)
T d1g16a_         131 ALAKELGIPFIESSAKNDDNVNEIFFTLAK  160 (166)
T ss_dssp             HHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHhcCCeEEEECCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999998864

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.92  E-value=4.6e-25  Score=130.88  Aligned_cols=109  Identities=17%  Similarity=0.178  Sum_probs=90.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++||++|++.+...++.+++++|++++++|++++.++.....|+..+.......++|+++++||+|+.+...  .....
T Consensus        62 ~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~--~~~~~  139 (176)
T d1fzqa_          62 LNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIA  139 (176)
T ss_dssp             EEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHH
T ss_pred             EeEeeccccccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccccccc--HHHHH
Confidence            6899999999999999999999999999999999999999988888877766557899999999999975332  22222


Q ss_pred             HH-----HHHhCCcEEEeecCCCCChhHHhhhhccC
Q psy785           82 SL-----ARAFACTFLETSAKAKVNSWLCVECTNDQ  112 (112)
Q Consensus        82 ~~-----~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~  112 (112)
                      +.     ++..++++++|||++|.|++++|++|+++
T Consensus       140 ~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~~l~~~  175 (176)
T d1fzqa_         140 EGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN  175 (176)
T ss_dssp             HHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHhc
Confidence            21     12235689999999999999999999864

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.92  E-value=1.1e-25  Score=132.40  Aligned_cols=109  Identities=16%  Similarity=0.233  Sum_probs=90.7

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +++||+||++.+...+..++.+++++++|+|+++..+++....|+..+.+.....++|+++|+||+|+.+...  ..+..
T Consensus        49 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~--~~~i~  126 (164)
T d1zd9a1          49 IKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD--EKELI  126 (164)
T ss_dssp             EEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC--HHHHH
T ss_pred             EEEeeccccccccccccccccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhh--HHHHH
Confidence            6899999999999999999999999999999999999999999988887766667899999999999864322  22222


Q ss_pred             HH-----HHHhCCcEEEeecCCCCChhHHhhhhccC
Q psy785           82 SL-----ARAFACTFLETSAKAKVNSWLCVECTNDQ  112 (112)
Q Consensus        82 ~~-----~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~  112 (112)
                      +.     ++..+++++++||++|.|++++|++|+++
T Consensus       127 ~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~~  162 (164)
T d1zd9a1         127 EKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH  162 (164)
T ss_dssp             HHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHHHc
Confidence            21     22335689999999999999999999864

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.91  E-value=5.9e-25  Score=130.28  Aligned_cols=108  Identities=14%  Similarity=0.223  Sum_probs=89.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+||+||++.+...+..++++++++++|+|.++.+++..+..|+....+.......|+++++||+|+.+...  ..+..
T Consensus        58 ~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~--~~~i~  135 (173)
T d1e0sa_          58 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQ  135 (173)
T ss_dssp             EEEEEESCCGGGHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HHHHH
T ss_pred             eEEecCCCcchhhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccccc--HHHHH
Confidence            6899999999999999999999999999999999999999988888877765557899999999999964322  22222


Q ss_pred             H-----HHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 S-----LARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~-----~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .     .+...++.+++|||++|.||+|+|++|.+
T Consensus       136 ~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~~~l~~  170 (173)
T d1e0sa_         136 EKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS  170 (173)
T ss_dssp             HHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHH
Confidence            1     12223567999999999999999999875

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=1.6e-24  Score=129.54  Aligned_cols=109  Identities=29%  Similarity=0.507  Sum_probs=94.1

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC---CCCcEEEEeeCCCCCCcccccHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT---DDVPMVLVGNKCDLEEERVVGKE   78 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~   78 (112)
                      +.+|||+|+..+...+..++.+++++++++|.+++.+++.+..|+..+..+...   .++|+++|+||+|+.+ +....+
T Consensus        53 ~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~  131 (184)
T d1vg8a_          53 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATK  131 (184)
T ss_dssp             EEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHH
T ss_pred             EEeeecCCcccccccccccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc-cchhHH
Confidence            578999999999999999999999999999999999999999999988776543   4689999999999865 445566


Q ss_pred             HHHHHHHH-hCCcEEEeecCCCCChhHHhhhhcc
Q psy785           79 QGASLARA-FACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        79 ~~~~~~~~-~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ...+++.. .++++++|||++|.||+++|+++++
T Consensus       132 ~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~  165 (184)
T d1vg8a_         132 RAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR  165 (184)
T ss_dssp             HHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCeEEEEcCCCCcCHHHHHHHHHH
Confidence            66666654 5789999999999999999998864

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2e-24  Score=128.41  Aligned_cols=105  Identities=22%  Similarity=0.379  Sum_probs=87.9

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCCcEEEEeeCCCCCC--cccccH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD--TDDVPMVLVGNKCDLEE--ERVVGK   77 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~~~--~~~~~~   77 (112)
                      +++|||+|++++.     +++++|++++|||++++.||+.+..|+..+.....  ...+|+++|+||.|+..  .+.++.
T Consensus        54 l~i~Dt~g~~~~~-----~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~  128 (175)
T d2bmja1          54 VLIREEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGD  128 (175)
T ss_dssp             EEEEECSSCCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCH
T ss_pred             EEEeecccccccc-----cccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhH
Confidence            7899999998753     68899999999999999999999999988876543  25689999999888743  456777


Q ss_pred             HHHHHHHHH-hCCcEEEeecCCCCChhHHhhhhcc
Q psy785           78 EQGASLARA-FACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        78 ~~~~~~~~~-~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++...++.+ .++++++|||++|.||+++|..+++
T Consensus       129 ~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~  163 (175)
T d2bmja1         129 ARARALCADMKRCSYYETCATYGLNVDRVFQEVAQ  163 (175)
T ss_dssp             HHHHHHHHTSTTEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCeEEEeCCCCCcCHHHHHHHHHH
Confidence            788888765 4679999999999999999998764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.91  E-value=8.1e-26  Score=134.97  Aligned_cols=108  Identities=15%  Similarity=0.166  Sum_probs=84.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+||+||++.+..+++.++.+++++++|+|++++.++.....|+..+.+.....+.|+++++||+|+....  +..+..
T Consensus        63 ~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~--~~~~i~  140 (182)
T d1moza_          63 LNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL--SASEVS  140 (182)
T ss_dssp             EEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC--CHHHHH
T ss_pred             EEEEecccccccchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecccccc--CHHHHH
Confidence            689999999999999999999999999999999999999988888777766555679999999999996422  223222


Q ss_pred             H-----HHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 S-----LARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~-----~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +     .+...++++++|||++|.||+++|++|++
T Consensus       141 ~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~~~l~~  175 (182)
T d1moza_         141 KELNLVELKDRSWSIVASSAIKGEGITEGLDWLID  175 (182)
T ss_dssp             HHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            2     12233568999999999999999999875

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.91  E-value=1.1e-24  Score=128.11  Aligned_cols=108  Identities=17%  Similarity=0.197  Sum_probs=87.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+|||||++.+...++.++++++++++++|.++..++.....++..........+.|+++|+||+|+.+....  .+..
T Consensus        48 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~  125 (165)
T d1ksha_          48 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC--NAIQ  125 (165)
T ss_dssp             EEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--HHHH
T ss_pred             eeeeecCcchhhhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCH--HHHH
Confidence            68999999999999999999999999999999999999888777776666555578999999999999754332  2222


Q ss_pred             HHH-----HHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLA-----RAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~-----~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ...     +..++++++|||++|.||.++|++|++
T Consensus       126 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~  160 (165)
T d1ksha_         126 EALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLD  160 (165)
T ss_dssp             HHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            221     122458999999999999999999875

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.86  E-value=2.3e-22  Score=116.99  Aligned_cols=110  Identities=17%  Similarity=0.266  Sum_probs=89.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccH---H
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGK---E   78 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~---~   78 (112)
                      +.+||++|++.+...+..++++++++++++|.+++.++.....|...+.........|+++++||.|+........   .
T Consensus        46 ~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~  125 (160)
T d1r8sa_          46 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDK  125 (160)
T ss_dssp             EEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHH
T ss_pred             EEEecCCCcccchhhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHH
Confidence            6789999999999999999999999999999999999999988888887766667789999999999864322111   1


Q ss_pred             HHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           79 QGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        79 ~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .....++..++++++|||++|.||+++|++|.+
T Consensus       126 ~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~  158 (160)
T d1r8sa_         126 LGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN  158 (160)
T ss_dssp             TTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred             HHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHh
Confidence            111223334678999999999999999999875

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.78  E-value=2e-19  Score=106.10  Aligned_cols=108  Identities=15%  Similarity=0.143  Sum_probs=82.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+||++|++.....+..++..++++++++|.++..+++....+.............|+++|+||.|+.....  ..+..
T Consensus        61 ~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~i~  138 (177)
T d1zj6a1          61 FLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT--VAEIS  138 (177)
T ss_dssp             EEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HHHHH
T ss_pred             EEEeccccccccccchhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCc--HHHHH
Confidence            5789999999998899999999999999999999999988777666666655557899999999999864332  22222


Q ss_pred             HHH-----HHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 SLA-----RAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~~~-----~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +..     ...+++++++||++|.|+++++++|.+
T Consensus       139 ~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~  173 (177)
T d1zj6a1         139 QFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS  173 (177)
T ss_dssp             HHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred             HHHHHHhhHhcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            222     223468999999999999999999875

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=1.3e-17  Score=96.57  Aligned_cols=109  Identities=15%  Similarity=0.222  Sum_probs=88.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      ..+||++|...+...++.++..++++++++|.++..++.....|.............|+++++||.|+....  ...+..
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~--~~~~i~  123 (166)
T d2qtvb1          46 FTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV--SEAELR  123 (166)
T ss_dssp             EEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCC--CHHHHH
T ss_pred             EEEEeeccchhhhhhHhhhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccC--CHHHHH
Confidence            578999999999999999999999999999999999998888888877777666789999999999986422  222222


Q ss_pred             HHHH------------HhCCcEEEeecCCCCChhHHhhhhccC
Q psy785           82 SLAR------------AFACTFLETSAKAKVNSWLCVECTNDQ  112 (112)
Q Consensus        82 ~~~~------------~~~~~~~~~Sa~~~~~v~~~~~~l~~~  112 (112)
                      +...            ..++++++|||++|.||+|+|++|.+.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~~  166 (166)
T d2qtvb1         124 SALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY  166 (166)
T ss_dssp             HHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHHHHTTC
T ss_pred             HHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHHHHhCC
Confidence            2211            113479999999999999999999863

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=6.4e-19  Score=105.15  Aligned_cols=110  Identities=17%  Similarity=0.116  Sum_probs=77.2

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhH-----------HHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTF-----------NDLSDLREQILRVKDTDDVPMVLVGNKCDL   69 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-----------~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~   69 (112)
                      ++++|||+|++++..++..++++++++++++|.++..++           +....|.. +.......+.|+++++||+|+
T Consensus        43 ~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~-i~~~~~~~~~~~~lv~Nk~d~  121 (195)
T d1svsa1          43 HFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDS-ICNNKWFTDTSIILFLNKKDL  121 (195)
T ss_dssp             EEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHH-HHTCGGGTTSEEEEEEECHHH
T ss_pred             eeeeeccccccccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHH-HhcccccCCCCEEEEeccchh
Confidence            378999999999999999999999999999999887654           22333433 333333467899999999985


Q ss_pred             CCc---------------ccccHHHHHHHH-HH----------hCCcEEEeecCCCCChhHHhhhhcc
Q psy785           70 EEE---------------RVVGKEQGASLA-RA----------FACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        70 ~~~---------------~~~~~~~~~~~~-~~----------~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ...               ..........+. ..          .++.+++|||++|.||+++|+.+.+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~  189 (195)
T d1svsa1         122 FEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTD  189 (195)
T ss_dssp             HHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             hhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHH
Confidence            311               011122222111 11          1346789999999999999988753

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=3.3e-18  Score=101.26  Aligned_cols=104  Identities=16%  Similarity=0.097  Sum_probs=72.3

Q ss_pred             ceEEeCCCcccc--------hhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQF--------TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~--------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~   73 (112)
                      +.+|||||....        .......+++||++++|+|++++..... ..|...+.+.  ..++|+++|+||+|+.+..
T Consensus        55 ~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~--~~~~piilv~NK~Dl~~~~  131 (178)
T d1wf3a1          55 IVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED-ELVARALKPL--VGKVPILLVGNKLDAAKYP  131 (178)
T ss_dssp             EEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGG--TTTSCEEEEEECGGGCSSH
T ss_pred             eeecccccccccccccchhcccccccccccccceeeeechhhhhcccc-cchhhheecc--ccchhhhhhhcccccccCH
Confidence            679999997543        2223345789999999999987644322 2344444432  2468999999999986432


Q ss_pred             cccHHHHHHHHHHhC-CcEEEeecCCCCChhHHhhhhcc
Q psy785           74 VVGKEQGASLARAFA-CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 ~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                         .+....+....+ ..++++||++|.|++++++++.+
T Consensus       132 ---~~~~~~~~~~~~~~~~~~iSA~~~~gi~~L~~~i~~  167 (178)
T d1wf3a1         132 ---EEAMKAYHELLPEAEPRMLSALDERQVAELKADLLA  167 (178)
T ss_dssp             ---HHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHT
T ss_pred             ---HHHHHHHHhhcccCceEEEecCCCCCHHHHHHHHHH
Confidence               223334444444 48899999999999999999875

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.70  E-value=5.8e-17  Score=95.93  Aligned_cols=106  Identities=16%  Similarity=0.023  Sum_probs=72.2

Q ss_pred             ceEEeCCCcccc-------hhhHHhhcccCCEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785            2 LEILDTAGTEQF-------TAMRDLYMKNGQGFILVYSITAQ--STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE   72 (112)
Q Consensus         2 ~~i~Dt~g~~~~-------~~~~~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~   72 (112)
                      +++|||||....       .......+..++++++++|....  .+++....|+......  ..++|+++|+||+|+.+.
T Consensus        51 ~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~p~iiv~NK~D~~~~  128 (180)
T d1udxa2          51 FTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPA--LLRRPSLVALNKVDLLEE  128 (180)
T ss_dssp             EEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHH--HHHSCEEEEEECCTTSCH
T ss_pred             EEEcCCCeeecCchHHHHHHHHHHHHHHhhhhhhhhcccccccccchhhhhhhhhccccc--cchhhhhhhhhhhhhhhH
Confidence            689999994421       12233457889999999998653  2333333443332211  135799999999999754


Q ss_pred             ccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           73 RVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..  .+...+.....+.+++++||++|.|++++++.+.+
T Consensus       129 ~~--~~~~~~~~~~~~~~~~~iSA~tg~gid~L~~~i~~  165 (180)
T d1udxa2         129 EA--VKALADALAREGLAVLPVSALTGAGLPALKEALHA  165 (180)
T ss_dssp             HH--HHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            33  23444455556889999999999999999998753

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.70  E-value=3.4e-17  Score=95.30  Aligned_cols=109  Identities=17%  Similarity=0.164  Sum_probs=85.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+||++|.+.+.......+..++++++++|+.+..++.....+.............|+++++||.|+...... .+...
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~-~~i~~  129 (169)
T d1upta_          51 FQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS-SEMAN  129 (169)
T ss_dssp             EEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-HHHHH
T ss_pred             EEEeeccccccccccchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccH-HHHHH
Confidence            57899999999999999999999999999999998888877776655555444467899999999999753321 12222


Q ss_pred             H----HHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           82 S----LARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        82 ~----~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .    ++...++++++|||++|.||+++|++|++
T Consensus       130 ~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~  163 (169)
T d1upta_         130 SLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVE  163 (169)
T ss_dssp             HHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            2    23334679999999999999999999864

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.69  E-value=3.4e-16  Score=92.27  Aligned_cols=109  Identities=13%  Similarity=0.180  Sum_probs=81.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA   81 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~   81 (112)
                      +.+||+.|+..+...+..+++..+++++++|.++...+.....+...........+.|+++++||.|+...  .......
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~--~~~~~i~  136 (186)
T d1f6ba_          59 FTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA--ISEERLR  136 (186)
T ss_dssp             EEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC--CCHHHHH
T ss_pred             cccccccchhhhhhHHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCcccc--CCHHHHH
Confidence            46899999999988899999999999999999999888877665555555444467999999999998642  2333333


Q ss_pred             HHHHH-----------------hCCcEEEeecCCCCChhHHhhhhccC
Q psy785           82 SLARA-----------------FACTFLETSAKAKVNSWLCVECTNDQ  112 (112)
Q Consensus        82 ~~~~~-----------------~~~~~~~~Sa~~~~~v~~~~~~l~~~  112 (112)
                      +....                 .++++++|||++|.|++|+|+||+++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~  184 (186)
T d1f6ba_         137 EMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY  184 (186)
T ss_dssp             HHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             HHHhhcccchhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            32211                 12468999999999999999999875

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.4e-17  Score=99.63  Aligned_cols=108  Identities=14%  Similarity=0.070  Sum_probs=79.0

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh-----------hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS-----------TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-----------s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      +++||++|++.+...|..++++++++++++|.++..           .++....|...+... ...+.|+++++||.|+.
T Consensus        47 ~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~-~~~~~~~~~v~NK~Dl~  125 (200)
T d2bcjq2          47 FRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP-WFQNSSVILFLNKKDLL  125 (200)
T ss_dssp             EEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCG-GGSSSEEEEEEECHHHH
T ss_pred             eeeccccccccccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhh-hccCccEEEecchhhhh
Confidence            689999999999999999999999999999987753           345566676665443 23678999999999974


Q ss_pred             Ccc----------------cccHHHHHHHHHH----------hCCcEEEeecCCCCChhHHhhhhc
Q psy785           71 EER----------------VVGKEQGASLARA----------FACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        71 ~~~----------------~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      +.+                ..+......+...          ..+.+++|||++|.||.++|+.+.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~  191 (200)
T d2bcjq2         126 EEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVK  191 (200)
T ss_dssp             HHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             hhcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHH
Confidence            211                1122222222211          124578999999999999998765

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=1.3e-16  Score=95.47  Aligned_cols=109  Identities=16%  Similarity=0.096  Sum_probs=72.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh----------hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS----------TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~   71 (112)
                      +++||++|++.+...+..+++++++++++++.++..          .++....|+..+.......+.|+++++||+|+.+
T Consensus        46 ~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~  125 (200)
T d1zcba2          46 FKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLE  125 (200)
T ss_dssp             EEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH
T ss_pred             eeeecccceeeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhh
Confidence            689999999999999999999999999999998753          3444455666666555457899999999999742


Q ss_pred             c----------------ccccHHHHHHHHHH-----------hCCcEEEeecCCCCChhHHhhhhc
Q psy785           72 E----------------RVVGKEQGASLARA-----------FACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        72 ~----------------~~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      +                .......+.++...           ..+.+++|||+++.||.++|+.+.
T Consensus       126 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~  191 (200)
T d1zcba2         126 EKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVK  191 (200)
T ss_dssp             HHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHH
T ss_pred             hhccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHH
Confidence            1                01122333332221           124567899999999999998764

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.64  E-value=9e-16  Score=90.85  Aligned_cols=105  Identities=10%  Similarity=0.041  Sum_probs=74.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc--HHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG--KEQ   79 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~   79 (112)
                      +.++|++|+.+|.......+..+|++++++|.+.....+....| ..+..    .++|+++|+||+|+.+.....  .+.
T Consensus        61 ~~~~d~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~-~~~~~----~~~p~iiv~NKiD~~~~~~~~~~~~~  135 (179)
T d1wb1a4          61 ITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM-LILDH----FNIPIIVVITKSDNAGTEEIKRTEMI  135 (179)
T ss_dssp             EEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCBCEEEECTTSSCHHHHHHHHHH
T ss_pred             ccccccccccccccchhhhhhhccccccccccccccchhhhhhh-hhhhh----cCCcceeccccccccCHHHHHHHHHH
Confidence            57899999999988888889999999999999875433322222 22322    468999999999987543211  111


Q ss_pred             HHHHHHH-h---CCcEEEeecCCCCChhHHhhhhcc
Q psy785           80 GASLARA-F---ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        80 ~~~~~~~-~---~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ...+.+. .   +.+++++||++|.|++++++.+.+
T Consensus       136 ~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~  171 (179)
T d1wb1a4         136 MKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIIT  171 (179)
T ss_dssp             HHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHhhcCCCCeEEEEEccCCcCHHHHHHHHHh
Confidence            2222222 1   348999999999999999998864

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=2.2e-17  Score=95.98  Aligned_cols=101  Identities=18%  Similarity=0.198  Sum_probs=74.4

Q ss_pred             ceEEeCCCcccch--------hhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQFT--------AMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~--------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~   73 (112)
                      +.+||++|..+..        .....++.++|++++++|..+..+++....|...+....  .++|+++|+||+|+.+..
T Consensus        51 ~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~iilv~NK~Dl~~~~  128 (161)
T d2gj8a1          51 LHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLP--AKLPITVVRNKADITGET  128 (161)
T ss_dssp             EEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSC--TTCCEEEEEECHHHHCCC
T ss_pred             eeeccccccccccccchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcc--cccceeeccchhhhhhhH
Confidence            5789999955432        223345789999999999998877766666655555432  468999999999986533


Q ss_pred             cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ...       .+..+.+++++||++|.|+++++++|.+
T Consensus       129 ~~~-------~~~~~~~~~~iSAk~~~gi~~L~~~l~~  159 (161)
T d2gj8a1         129 LGM-------SEVNGHALIRLSARTGEGVDVLRNHLKQ  159 (161)
T ss_dssp             CEE-------EEETTEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHH-------HHhCCCcEEEEECCCCCCHHHHHHHHHh
Confidence            211       1123569999999999999999999875

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.60  E-value=4.2e-15  Score=89.66  Aligned_cols=106  Identities=17%  Similarity=0.109  Sum_probs=70.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHH--H
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKE--Q   79 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~--~   79 (112)
                      +.+.||||+.+|......-+..+|++++|+|..+.-.-...+.-+..+...   .-.|++++.||+|+.+.......  .
T Consensus        88 ~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~---~i~~iIV~vNK~Dl~~~~~~~~~~~~  164 (205)
T d2qn6a3          88 ISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQ  164 (205)
T ss_dssp             EEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred             EEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc---CCceeeeccccCCCccchHHHHHHHH
Confidence            679999999999877777788999999999997752111112222222221   22488889999999754322111  1


Q ss_pred             HHHHHHHh---CCcEEEeecCCCCChhHHhhhhc
Q psy785           80 GASLARAF---ACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        80 ~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      ..++....   +++++++||++|.|++++++.+.
T Consensus       165 ~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~  198 (205)
T d2qn6a3         165 IKQFTKGTWAENVPIIPVSALHKINIDSLIEGIE  198 (205)
T ss_dssp             HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             HHHHhccccCCCCeEEEEeCCCCCChHHHHHHHH
Confidence            11222221   35899999999999999998765

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.60  E-value=4.4e-15  Score=88.88  Aligned_cols=107  Identities=15%  Similarity=0.117  Sum_probs=72.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc--HHH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG--KEQ   79 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~   79 (112)
                      +.++||||+++|......-+..+|++++++|............-+..+...   ...+++++.||+|+.+.....  ...
T Consensus        80 ~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~~~~  156 (195)
T d1kk1a3          80 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQ  156 (195)
T ss_dssp             EEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred             EeeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh---cCccceeeeecccchhhHHHHHHHHH
Confidence            679999999999887777788999999999988753222222222223221   224578889999987543221  112


Q ss_pred             HHHHHHHh---CCcEEEeecCCCCChhHHhhhhcc
Q psy785           80 GASLARAF---ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        80 ~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..++....   .++++++||++|.|++++++.+.+
T Consensus       157 ~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~  191 (195)
T d1kk1a3         157 IKEFIEGTVAENAPIIPISALHGANIDVLVKAIED  191 (195)
T ss_dssp             HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            22233322   358999999999999999988753

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.59  E-value=1.9e-15  Score=88.66  Aligned_cols=103  Identities=18%  Similarity=0.165  Sum_probs=68.0

Q ss_pred             ceEEeCCCccc---------chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785            2 LEILDTAGTEQ---------FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE   72 (112)
Q Consensus         2 ~~i~Dt~g~~~---------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~   72 (112)
                      +.+|||+|...         +.......+..+|+++++.+.+....... ..+...+..    .++|+++|+||+|+...
T Consensus        50 ~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~-~~~~~~l~~----~~~pviiv~NK~Dl~~~  124 (171)
T d1mkya1          50 FKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED-ESLADFLRK----STVDTILVANKAENLRE  124 (171)
T ss_dssp             EEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH-HHHHHHHHH----HTCCEEEEEESCCSHHH
T ss_pred             cccccccceeeeeccccccccccccccccccCcEEEEeecccccccccc-ccccccccc----ccccccccchhhhhhhh
Confidence            57899998432         22233445678999999999876544332 334444444    35799999999998632


Q ss_pred             ccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           73 RVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                        ...+...++.+....+++++||++|.|++++++++.+
T Consensus       125 --~~~~~~~~~~~~~~~~~i~iSAk~g~gid~L~~~i~~  161 (171)
T d1mkya1         125 --FEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIK  161 (171)
T ss_dssp             --HHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHH
T ss_pred             --hhhHHHHHHHhcCCCCeEEEecCCCCCHHHHHHHHHH
Confidence              1122222222222347899999999999999998864

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.59  E-value=1.6e-15  Score=92.91  Aligned_cols=104  Identities=19%  Similarity=0.070  Sum_probs=70.6

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc-----
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG-----   76 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~-----   76 (112)
                      +.|+||||+++|.......+..+|++++|+|+...-.-+... .+..+..    .++|+++++||+|+.......     
T Consensus        72 ~~~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~~~-~~~~~~~----~~~p~iivlNK~D~~~~~~~~~~~~~  146 (227)
T d1g7sa4          72 LFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQE-ALNILRM----YRTPFVVAANKIDRIHGWRVHEGRPF  146 (227)
T ss_dssp             EEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHH-HHHHHHH----TTCCEEEEEECGGGSTTCCCCTTCCH
T ss_pred             cccccccceecccccchhcccccceEEEEEecccCcccchhH-HHHHhhc----CCCeEEEEEECccCCCchhhhhhHHH
Confidence            679999999999877777889999999999997643333322 2233333    568999999999986422100     


Q ss_pred             --------H-------HHHHHHHHH---h---------------CCcEEEeecCCCCChhHHhhhhc
Q psy785           77 --------K-------EQGASLARA---F---------------ACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        77 --------~-------~~~~~~~~~---~---------------~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                              .       ....+....   .               ..+++++||++|.|++++++.+.
T Consensus       147 ~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~  213 (227)
T d1g7sa4         147 METFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLM  213 (227)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHH
T ss_pred             HHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHH
Confidence                    0       000011110   0               13689999999999999998774

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.58  E-value=3.2e-15  Score=88.29  Aligned_cols=103  Identities=20%  Similarity=0.086  Sum_probs=64.9

Q ss_pred             ceEEeCCCccc---------------chhhHHhhcccCCEEEEEEeCCChhhHHHHH----------HHHHHHHhhcCCC
Q psy785            2 LEILDTAGTEQ---------------FTAMRDLYMKNGQGFILVYSITAQSTFNDLS----------DLREQILRVKDTD   56 (112)
Q Consensus         2 ~~i~Dt~g~~~---------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~----------~~~~~i~~~~~~~   56 (112)
                      +++|||||...               +.......++++|++++++|...+.......          .....+.+    .
T Consensus        45 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~----~  120 (184)
T d2cxxa1          45 HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE----L  120 (184)
T ss_dssp             EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH----T
T ss_pred             ceecccCCceeccccccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH----c
Confidence            57999999421               1122334567899999999987543222111          11222222    4


Q ss_pred             CCcEEEEeeCCCCCCcccccHHHHHHHHHHhC-------CcEEEeecCCCCChhHHhhhhcc
Q psy785           57 DVPMVLVGNKCDLEEERVVGKEQGASLARAFA-------CTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        57 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ++|+++|+||+|+.+....   ....+....+       ..++++||++|.|++++++++.+
T Consensus       121 ~~p~iiv~NK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~  179 (184)
T d2cxxa1         121 DIPTIVAVNKLDKIKNVQE---VINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFE  179 (184)
T ss_dssp             TCCEEEEEECGGGCSCHHH---HHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHH
T ss_pred             CCCEEEEEeeeehhhhHHH---HHHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999997643321   1222222221       25889999999999999998864

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.55  E-value=2.7e-14  Score=82.57  Aligned_cols=100  Identities=19%  Similarity=0.121  Sum_probs=68.0

Q ss_pred             ceEEeCCCccc--------c-hhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785            2 LEILDTAGTEQ--------F-TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE   72 (112)
Q Consensus         2 ~~i~Dt~g~~~--------~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~   72 (112)
                      +.+|||||...        + .......+.++|++++|+|.+++...+...-+ ..+      ...|+++++||+|+.+.
T Consensus        50 ~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~~~~~-~~~------~~~~~i~~~~k~d~~~~  122 (160)
T d1xzpa2          50 FRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKIL-ERI------KNKRYLVVINKVDVVEK  122 (160)
T ss_dssp             EEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHH-HHH------TTSSEEEEEEECSSCCC
T ss_pred             EEeccccccccCCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCcchhhhhhh-hhc------ccccceeeeeeccccch
Confidence            57999999421        1 12233357899999999999987665443222 111      34789999999999753


Q ss_pred             ccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785           73 RVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      ..  .+..... ...+.+++++||++|.|++++++++.+
T Consensus       123 ~~--~~~~~~~-~~~~~~~~~vSA~~g~gi~~L~~~I~k  158 (160)
T d1xzpa2         123 IN--EEEIKNK-LGTDRHMVKISALKGEGLEKLEESIYR  158 (160)
T ss_dssp             CC--HHHHHHH-HTCSTTEEEEEGGGTCCHHHHHHHHHH
T ss_pred             hh--hHHHHHH-hCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence            32  2222211 123458999999999999999998864

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.52  E-value=8.4e-15  Score=89.27  Aligned_cols=69  Identities=16%  Similarity=0.198  Sum_probs=54.2

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh----------hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS----------TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      +++||++|++.+...|..++++++++++++|.++.+          .+.....++..+.......++|+++++||+|+.
T Consensus        49 ~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~  127 (221)
T d1azta2          49 FHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL  127 (221)
T ss_dssp             EEEEECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHH
T ss_pred             EEEEecCccceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhh
Confidence            689999999999999999999999999999987643          233333344445554444679999999999974

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=2.1e-13  Score=81.90  Aligned_cols=71  Identities=18%  Similarity=0.323  Sum_probs=53.1

Q ss_pred             ceEEeCCCcccch-hhHHhhcccCCEEEEEEeCCChhh-HHHHHHHHHHHHhh-cCC-CCCcEEEEeeCCCCCCc
Q psy785            2 LEILDTAGTEQFT-AMRDLYMKNGQGFILVYSITAQST-FNDLSDLREQILRV-KDT-DDVPMVLVGNKCDLEEE   72 (112)
Q Consensus         2 ~~i~Dt~g~~~~~-~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~-~~~-~~~p~ivv~nK~D~~~~   72 (112)
                      +.+||++|++++. ..+..++++++++++|+|+++..+ +.....|+..+... ... ..+|+++++||+|+...
T Consensus        49 ~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          49 LTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             EEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             eeeeeccccccccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            6899999999885 577888999999999999998765 34444444444322 222 45899999999999753

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.46  E-value=4.4e-13  Score=79.16  Aligned_cols=104  Identities=21%  Similarity=0.097  Sum_probs=68.0

Q ss_pred             ceEEeCCCcccc------------hhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785            2 LEILDTAGTEQF------------TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL   69 (112)
Q Consensus         2 ~~i~Dt~g~~~~------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~   69 (112)
                      +.++||||....            .......++.+|++++++|.+.+..-+ ...+...+..    .+.|+++++||+|+
T Consensus        58 ~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~~-~~~~~~~~~~----~~~~~i~v~nK~D~  132 (186)
T d1mkya2          58 YVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQ-DQRMAGLMER----RGRASVVVFNKWDL  132 (186)
T ss_dssp             EEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH----TTCEEEEEEECGGG
T ss_pred             eeeeccCCccccccccccccccchhHHHHHHHhcCCEEEEeecccccchhh-HHHHHHHHHH----cCCceeeeccchhh
Confidence            457788885432            223444567899999999997653322 2233333333    46899999999998


Q ss_pred             CCcccccHHHHHHHHHHh-----CCcEEEeecCCCCChhHHhhhhc
Q psy785           70 EEERVVGKEQGASLARAF-----ACTFLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      .........+..+..++.     ..+++++||++|.|++++++.+.
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~L~~~i~  178 (186)
T d1mkya2         133 VVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMN  178 (186)
T ss_dssp             STTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHH
T ss_pred             hcchhhhhhhHHHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHHH
Confidence            654443334433333321     24899999999999999999874

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.46  E-value=7.8e-15  Score=86.89  Aligned_cols=106  Identities=12%  Similarity=0.128  Sum_probs=65.6

Q ss_pred             ceEEeCCCcccch----hh---HHhhcccCCEEEEEEeCCChhhH---HHHHHHHHHHHh-hcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFT----AM---RDLYMKNGQGFILVYSITAQSTF---NDLSDLREQILR-VKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~----~~---~~~~~~~~d~~i~v~d~~~~~s~---~~~~~~~~~i~~-~~~~~~~p~ivv~nK~D~~   70 (112)
                      +.+|||||..+..    .+   ....+..++.++++++.......   +....+...... .....++|+++|+||+|+.
T Consensus        51 ~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~  130 (185)
T d1lnza2          51 FVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP  130 (185)
T ss_dssp             EEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST
T ss_pred             EEEecCCCcccCchHHHHHHHHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchH
Confidence            6799999963211    11   22335678999988877554322   111111111111 1122468999999999997


Q ss_pred             CcccccHHHHHHHHHHh--CCcEEEeecCCCCChhHHhhhhcc
Q psy785           71 EERVVGKEQGASLARAF--ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        71 ~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      +..    +..+.+.+..  +.+++++||++|.|++++++.+.+
T Consensus       131 ~~~----~~~~~~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~  169 (185)
T d1lnza2         131 EAA----ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVAN  169 (185)
T ss_dssp             THH----HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHH
T ss_pred             hHH----HHHHHHHHHhccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            532    2233344433  578999999999999999998753

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.45  E-value=1.5e-13  Score=82.37  Aligned_cols=105  Identities=14%  Similarity=0.066  Sum_probs=71.5

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc---HH
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG---KE   78 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~---~~   78 (112)
                      +.++||||+.+|......-+..+|++++|+|..+.-.-+..+.| ..+...   ...|+|++.||+|+.+.....   ..
T Consensus        68 ~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~-~~a~~~---~~~~iIv~iNK~D~~~~~~~~~~i~~  143 (196)
T d1d2ea3          68 YAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQI---GVEHVVVYVNKADAVQDSEMVELVEL  143 (196)
T ss_dssp             EEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHH
T ss_pred             EEeecCcchHHHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHH-HHHHHh---cCCcEEEEEecccccccHHHHHHHHH
Confidence            67999999999988777788999999999999875333322222 222221   335788899999986533211   12


Q ss_pred             HHHHHHHHhC-----CcEEEeecCCC----------CChhHHhhhhc
Q psy785           79 QGASLARAFA-----CTFLETSAKAK----------VNSWLCVECTN  110 (112)
Q Consensus        79 ~~~~~~~~~~-----~~~~~~Sa~~~----------~~v~~~~~~l~  110 (112)
                      +...+....+     .+++++||++|          .++.++++.+.
T Consensus       144 ~i~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~  190 (196)
T d1d2ea3         144 EIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVD  190 (196)
T ss_dssp             HHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHH
Confidence            2333444343     47999999998          47888887664

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.38  E-value=3.1e-12  Score=77.86  Aligned_cols=98  Identities=19%  Similarity=0.035  Sum_probs=66.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCcccccH---
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERVVGK---   77 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~~~---   77 (112)
                      +.++||||+++|......-...+|++++|+|+...-.-+....+. .+..    .++| ++++.||+|+.+..+...   
T Consensus        91 ~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~-~~~~----~gv~~iiv~vNK~D~~~~~~~~~~~~  165 (222)
T d1zunb3          91 FIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSY-IASL----LGIKHIVVAINKMDLNGFDERVFESI  165 (222)
T ss_dssp             EEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHH-HHHH----TTCCEEEEEEECTTTTTSCHHHHHHH
T ss_pred             EEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHHH-HHHH----cCCCEEEEEEEccccccccceehhhh
Confidence            679999999999887777789999999999997654333333222 2222    3455 788999999975332111   


Q ss_pred             -HHHHHHHHHhCC-----cEEEeecCCCCChhH
Q psy785           78 -EQGASLARAFAC-----TFLETSAKAKVNSWL  104 (112)
Q Consensus        78 -~~~~~~~~~~~~-----~~~~~Sa~~~~~v~~  104 (112)
                       .+...+....++     +++++||++|.|+.+
T Consensus       166 ~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         166 KADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             HHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             HHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence             223344444433     679999999998854

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.35  E-value=8.2e-12  Score=74.20  Aligned_cols=86  Identities=8%  Similarity=0.107  Sum_probs=57.5

Q ss_pred             hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHh----CCcEEEee
Q psy785           20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAF----ACTFLETS   95 (112)
Q Consensus        20 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~S   95 (112)
                      ...+++++++++|+..+..-.. ..++..+..    .++|+++|+||+|+.+.... .+......+.+    ..+++++|
T Consensus       102 ~~~~~~~vi~viD~~~~~~~~~-~~~~~~l~~----~~~piivv~NK~D~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~S  175 (195)
T d1svia_         102 TREELKAVVQIVDLRHAPSNDD-VQMYEFLKY----YGIPVIVIATKADKIPKGKW-DKHAKVVRQTLNIDPEDELILFS  175 (195)
T ss_dssp             HCTTEEEEEEEEETTSCCCHHH-HHHHHHHHH----TTCCEEEEEECGGGSCGGGH-HHHHHHHHHHHTCCTTSEEEECC
T ss_pred             cccchhhhhhhhhccccccccc-ccccccccc----ccCcceechhhccccCHHHH-HHHHHHHHHHhcccCCCCEEEEe
Confidence            3557899999999876532211 233333443    46899999999998654432 22223333333    34899999


Q ss_pred             cCCCCChhHHhhhhcc
Q psy785           96 AKAKVNSWLCVECTND  111 (112)
Q Consensus        96 a~~~~~v~~~~~~l~~  111 (112)
                      |++|.|++++++++.+
T Consensus       176 A~~~~gi~el~~~i~~  191 (195)
T d1svia_         176 SETKKGKDEAWGAIKK  191 (195)
T ss_dssp             TTTCTTHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            9999999999998754

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.22  E-value=2.9e-11  Score=74.49  Aligned_cols=103  Identities=17%  Similarity=0.114  Sum_probs=55.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh---hHH---HHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCccc
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS---TFN---DLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERV   74 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~   74 (112)
                      +.+.||||+..|......-...+|++++|+|+....   ++.   ....-+..+..    .++| ++++.||+|+.....
T Consensus       104 i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~----~~i~~iiv~iNKmD~~~~~~  179 (245)
T d1r5ba3         104 FSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKMDEPSVQW  179 (245)
T ss_dssp             EEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECTTSTTCSS
T ss_pred             eeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH----cCCCeEEEEEEcCCCCccch
Confidence            678999999999887777788999999999997631   000   11111111222    2344 778899999863211


Q ss_pred             --ccH----HHHHHHHHHh-------CCcEEEeecCCCCChhHHhhh
Q psy785           75 --VGK----EQGASLARAF-------ACTFLETSAKAKVNSWLCVEC  108 (112)
Q Consensus        75 --~~~----~~~~~~~~~~-------~~~~~~~Sa~~~~~v~~~~~~  108 (112)
                        ...    ++...+..+.       .++++++||++|.||.++++.
T Consensus       180 ~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~s  226 (245)
T d1r5ba3         180 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDS  226 (245)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCT
T ss_pred             hHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchhc
Confidence              001    1122222222       247999999999999887554

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.19  E-value=7.7e-11  Score=72.31  Aligned_cols=100  Identities=12%  Similarity=0.045  Sum_probs=66.1

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhh-------HHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCc
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQST-------FNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEE   72 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~   72 (112)
                      ++.|.||||+.+|......-...+|++++|+|.....-       .+....|+ ....    -++| ++++.||+|+.+.
T Consensus        85 ~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~-~~~~----~gv~~iiv~iNKmD~~~~  159 (239)
T d1f60a3          85 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHAL-LAFT----LGVRQLIVAVNKMDSVKW  159 (239)
T ss_dssp             EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHH-HHHH----TTCCEEEEEEECGGGGTT
T ss_pred             EEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHH-HHHH----cCCCeEEEEEECCCCCCC
Confidence            36899999999998888888899999999999875311       12222332 1122    3455 7789999998653


Q ss_pred             cccc----HHHHHHHHHHhC-----CcEEEeecCCCCChhHH
Q psy785           73 RVVG----KEQGASLARAFA-----CTFLETSAKAKVNSWLC  105 (112)
Q Consensus        73 ~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~  105 (112)
                      ....    ..+...+....+     ++++++||.+|.|+.+.
T Consensus       160 d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~~  201 (239)
T d1f60a3         160 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  201 (239)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcceec
Confidence            2211    122333444443     46899999999887543

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.19  E-value=3.2e-11  Score=72.42  Aligned_cols=94  Identities=17%  Similarity=0.144  Sum_probs=62.6

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCccccc---
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERVVG---   76 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~~---   76 (112)
                      ++.|+||||+++|......-++.+|++++|+|+...-..+..+.|. .+..    .++| ++++.||+|+.+....-   
T Consensus        68 ~i~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~-~~~~----~gi~~iiv~iNK~D~~~~~~~~~~~  142 (204)
T d2c78a3          68 HYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHIL-LARQ----VGVPYIVVFMNKVDMVDDPELLDLV  142 (204)
T ss_dssp             EEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHH-HHHH----TTCCCEEEEEECGGGCCCHHHHHHH
T ss_pred             EEEEEeCCCchhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHH-HHHH----cCCCeEEEEEEecccCCCHHHHHHH
Confidence            3689999999999887777889999999999998765554444442 2222    4566 66779999986532211   


Q ss_pred             HHHHHHHHHHhC-----CcEEEeecCCC
Q psy785           77 KEQGASLARAFA-----CTFLETSAKAK   99 (112)
Q Consensus        77 ~~~~~~~~~~~~-----~~~~~~Sa~~~   99 (112)
                      .++...+....+     .++++.||..+
T Consensus       143 ~~~i~~~l~~~~~~~~~i~~i~~sa~~~  170 (204)
T d2c78a3         143 EMEVRDLLNQYEFPGDEVPVIRGSALLA  170 (204)
T ss_dssp             HHHHHHHHHHTTSCTTTSCEEECCHHHH
T ss_pred             HHHHHHHHHhcCCCcccceeeeeechhh
Confidence            122333333333     47888888654

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.18  E-value=2.4e-10  Score=71.07  Aligned_cols=64  Identities=17%  Similarity=0.143  Sum_probs=51.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~   70 (112)
                      +.++||||+.+|.......++-+|++++|+|....-..+....|. .+.+    .++|.+++.||+|..
T Consensus        69 ~n~iDtPGh~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~-~~~~----~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          69 VFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWT-VAER----LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             EEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH----TTCCEEEEEECGGGC
T ss_pred             eeEEccCchhhhhhhhhhhhcccCceEEEeeccCCccchhHHHHH-hhhh----ccccccccccccccc
Confidence            689999999999988888999999999999998765555444443 2333    568999999999953

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.17  E-value=6.8e-11  Score=71.85  Aligned_cols=100  Identities=18%  Similarity=0.123  Sum_probs=64.3

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhH------HHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTF------NDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV   75 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~   75 (112)
                      +.|.||||+.+|......-.+-+|++++|+|+.....-      .....-+.....   ..-.+++++.||+|+......
T Consensus        83 i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~---~~~~~iIv~iNK~D~~~~~~~  159 (224)
T d1jnya3          83 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT---MGLDQLIVAVNKMDLTEPPYD  159 (224)
T ss_dssp             EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH---TTCTTCEEEEECGGGSSSTTC
T ss_pred             eEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHH---hCCCceEEEEEcccCCCcccc
Confidence            68999999999998888889999999999999864211      111111111111   123468889999998642111


Q ss_pred             --cH----HHHHHHHHHhC-----CcEEEeecCCCCChhH
Q psy785           76 --GK----EQGASLARAFA-----CTFLETSAKAKVNSWL  104 (112)
Q Consensus        76 --~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~  104 (112)
                        ..    .....+...++     .+++++||.+|.|+.+
T Consensus       160 ~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         160 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             HHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence              01    12223333333     4789999999998754

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.12  E-value=1.4e-10  Score=70.38  Aligned_cols=89  Identities=19%  Similarity=0.116  Sum_probs=65.8

Q ss_pred             HHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHH--hCCcEEE
Q psy785           17 RDLYMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARA--FACTFLE   93 (112)
Q Consensus        17 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~   93 (112)
                      .++...|.|.+++|+++.+|+ +...+.+|+.....    .++|+++|.||+|+.+...  .+....+...  .+++++.
T Consensus         4 ~RP~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~~--~~~~~~~~~~~~~~~~v~~   77 (225)
T d1u0la2           4 TKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVK   77 (225)
T ss_dssp             TTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEE
T ss_pred             CCCCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCcccCCHHH--HHHHHHhhcccccceeEEE
Confidence            455678999999999988764 56667777766555    6799999999999975332  2233333333  2468999


Q ss_pred             eecCCCCChhHHhhhhcc
Q psy785           94 TSAKAKVNSWLCVECTND  111 (112)
Q Consensus        94 ~Sa~~~~~v~~~~~~l~~  111 (112)
                      +||+++.|++++.+.+..
T Consensus        78 vSa~~~~g~~~L~~~l~~   95 (225)
T d1u0la2          78 TSAKTGMGIEELKEYLKG   95 (225)
T ss_dssp             CCTTTCTTHHHHHHHHSS
T ss_pred             eccccchhHhhHHHHhcC
Confidence            999999999999887643

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.10  E-value=1.7e-10  Score=68.79  Aligned_cols=72  Identities=17%  Similarity=0.249  Sum_probs=51.2

Q ss_pred             CceEEeCCCcccchhhHHhh----cccCCEEEEEEeCCC-hhhHHHHHHHHHHHH---hhcCCCCCcEEEEeeCCCCCCc
Q psy785            1 MLEILDTAGTEQFTAMRDLY----MKNGQGFILVYSITA-QSTFNDLSDLREQIL---RVKDTDDVPMVLVGNKCDLEEE   72 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~----~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~---~~~~~~~~p~ivv~nK~D~~~~   72 (112)
                      .+.+|||||++++...+..+    ...++.+++++|..+ ..+++....|+..+.   +.....++|+++++||+|+.+.
T Consensus        47 ~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          47 GVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             SCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             EEEEEecccccchhhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            47899999999876555544    456689999999764 456666666654332   2333467999999999998653

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=4.3e-10  Score=65.53  Aligned_cols=103  Identities=17%  Similarity=0.062  Sum_probs=65.6

Q ss_pred             eEEeCCCcccchh---------hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785            3 EILDTAGTEQFTA---------MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         3 ~i~Dt~g~~~~~~---------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~   73 (112)
                      ..||++|......         ........+++++++.|.......  ...+...+.+    ...|.+++.||.|....+
T Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~~~~~~~l~~----~~~~~i~v~~k~d~~~~~  129 (179)
T d1egaa1          56 IYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPD--DEMVLNKLRE----GKAPVILAVNKVDNVQEK  129 (179)
T ss_dssp             EEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHH--HHHHHHHHHS----SSSCEEEEEESTTTCCCH
T ss_pred             EeecCCCceecchhhhhhhhhhccccchhhcceeEEEEecCccchh--HHHHHHHhhh----ccCceeeeeeeeeccchh
Confidence            4678887543211         111123467888888887654322  1223333332    457899999999987654


Q ss_pred             cccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785           74 VVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 ~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .........+...++. +++++||++|.|++++++.+.+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~  168 (179)
T d1egaa1         130 ADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRK  168 (179)
T ss_dssp             HHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHT
T ss_pred             hhhhhHhhhhhhhcCCCCEEEEeCcCCCCHHHHHHHHHH
Confidence            4333444445555554 8999999999999999999875

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.07  E-value=6.7e-10  Score=69.30  Aligned_cols=87  Identities=18%  Similarity=0.152  Sum_probs=62.3

Q ss_pred             CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785            1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG   80 (112)
Q Consensus         1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~   80 (112)
                      +++|+||||+.+|.......++-+|++++|+|..+.-.-...+-|. ...    ..++|.++++||+|.....  .....
T Consensus        72 ~~n~iDtPG~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~-~a~----~~~lP~i~fINKmDr~~ad--~~~~l  144 (276)
T d2bv3a2          72 RINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAE----KYKVPRIAFANKMDKTGAD--LWLVI  144 (276)
T ss_dssp             EEEEECCCSSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHH-HHH----TTTCCEEEEEECTTSTTCC--HHHHH
T ss_pred             EEEEecCCchhhhHHHHHHHHHhhhheEEeccccCCcchhHHHHHH-HHH----HcCCCEEEEEecccccccc--cchhH
Confidence            4789999999999888888899999999999998765544444442 222    3579999999999975322  13334


Q ss_pred             HHHHHHhCCcEEEe
Q psy785           81 ASLARAFACTFLET   94 (112)
Q Consensus        81 ~~~~~~~~~~~~~~   94 (112)
                      .++...++...+++
T Consensus       145 ~ei~~~l~~~~vp~  158 (276)
T d2bv3a2         145 RTMQERLGARPVVM  158 (276)
T ss_dssp             HHHHHTTCCCEEEC
T ss_pred             HHHHHHhCCCeEEE
Confidence            45555666554443

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.06  E-value=1.6e-10  Score=70.26  Aligned_cols=90  Identities=19%  Similarity=0.101  Sum_probs=66.8

Q ss_pred             HHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH---HHHHHHhCCcEE
Q psy785           17 RDLYMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG---ASLARAFACTFL   92 (112)
Q Consensus        17 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~---~~~~~~~~~~~~   92 (112)
                      .++...|.|.+++|++..+|+ +...+.+++.....    .++|+++|.||+|+.+.... ....   .+.....|++++
T Consensus         4 ~RP~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~-~~~~~~~~~~y~~~g~~v~   78 (231)
T d1t9ha2           4 IRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDT-EDTIQAYAEDYRNIGYDVY   78 (231)
T ss_dssp             TTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHH-HHHHHHHHHHHHHHTCCEE
T ss_pred             CCCCccccCEEEEEEECCCCCCCHHHHHHHHHHHHH----cCCCEEEEEecccccccHHH-HHHHHHHHHHHhhccccce
Confidence            455678999999999987764 66677777665544    67999999999999753321 2222   233445689999


Q ss_pred             EeecCCCCChhHHhhhhcc
Q psy785           93 ETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        93 ~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .+||+++.|++++.+.+.+
T Consensus        79 ~~Sa~~~~gl~~L~~~l~~   97 (231)
T d1t9ha2          79 LTSSKDQDSLADIIPHFQD   97 (231)
T ss_dssp             ECCHHHHTTCTTTGGGGTT
T ss_pred             eeecCChhHHHHHHHhhcc
Confidence            9999999999999887643

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.85  E-value=2.5e-09  Score=68.48  Aligned_cols=63  Identities=21%  Similarity=0.320  Sum_probs=51.4

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL   69 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~   69 (112)
                      +.++||||+.+|.......++-+|++++|+|+...-..+....|... .+    .++|++++.||+|.
T Consensus        98 inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a-~~----~~~p~i~viNKiDr  160 (341)
T d1n0ua2          98 INLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQA-LG----ERIKPVVVINKVDR  160 (341)
T ss_dssp             EEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHH-HH----TTCEEEEEEECHHH
T ss_pred             EEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHH-HH----cCCCeEEEEECccc
Confidence            68999999999998888888999999999999876655554444333 33    56899999999995

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.68  E-value=1.3e-08  Score=61.63  Aligned_cols=107  Identities=13%  Similarity=-0.001  Sum_probs=62.2

Q ss_pred             ceEEeCCCcccchhhHHh---h--cccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785            2 LEILDTAGTEQFTAMRDL---Y--MKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER   73 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~---~--~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~   73 (112)
                      +.+.|+||+..+......   .  ....+.+++++|...   +............+...   ...|.+++.||+|+....
T Consensus        97 ~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~---~~~~~ivvinK~D~~~~~  173 (244)
T d1yrba1          97 YVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLLSEE  173 (244)
T ss_dssp             EEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGCCHH
T ss_pred             eeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH---hCCCceeeeeccccccHH
Confidence            568899998875432221   1  224678899998743   33332221111111111   357999999999987532


Q ss_pred             cccHH--------H------------------HHHHHHHh--CCcEEEeecCCCCChhHHhhhhcc
Q psy785           74 VVGKE--------Q------------------GASLARAF--ACTFLETSAKAKVNSWLCVECTND  111 (112)
Q Consensus        74 ~~~~~--------~------------------~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~l~~  111 (112)
                      .....        .                  ......+.  .++++++||++|.|+++++..+.+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e  239 (244)
T d1yrba1         174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYE  239 (244)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            11000        0                  00011111  358999999999999999988754

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.56  E-value=1.2e-07  Score=58.84  Aligned_cols=85  Identities=14%  Similarity=0.032  Sum_probs=58.8

Q ss_pred             hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEee
Q psy785           16 MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETS   95 (112)
Q Consensus        16 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S   95 (112)
                      .....++.+|++++|.|+-.|.+..+  ..+..+.     .++|.++|.||+|+.+...  .+...++.+..+...+.+|
T Consensus         8 ~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~-----~~Kp~IlVlNK~DLv~~~~--~~~w~~~f~~~~~~~i~is   78 (273)
T d1puja_           8 EVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAV--TQQWKEHFENQGIRSLSIN   78 (273)
T ss_dssp             HHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHH--HHHHHHHHHTTTCCEEECC
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH-----cCCCeEEEEECccCCchHH--HHHHHHHHHhcCCccceee
Confidence            34557899999999999977754332  1222222     3579999999999975332  2333444455577899999


Q ss_pred             cCCCCChhHHhhhh
Q psy785           96 AKAKVNSWLCVECT  109 (112)
Q Consensus        96 a~~~~~v~~~~~~l  109 (112)
                      +.++.+..++...+
T Consensus        79 a~~~~~~~~~~~~~   92 (273)
T d1puja_          79 SVNGQGLNQIVPAS   92 (273)
T ss_dssp             TTTCTTGGGHHHHH
T ss_pred             cccCCCccccchhh
Confidence            99999888776544

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.49  E-value=3.2e-07  Score=53.01  Aligned_cols=84  Identities=13%  Similarity=0.044  Sum_probs=49.8

Q ss_pred             cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc--HHHHHHHHHHhC--CcEEEeecCC
Q psy785           23 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG--KEQGASLARAFA--CTFLETSAKA   98 (112)
Q Consensus        23 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~--~~~~~~Sa~~   98 (112)
                      .++.++.+.+......... ..+...+..    ...++++++||+|+.+.....  .+...+.....+  .+++++||++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~~  172 (188)
T d1puia_          98 SLQGLVVLMDIRHPLKDLD-QQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLK  172 (188)
T ss_dssp             TEEEEEEEEETTSCCCHHH-HHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTT
T ss_pred             heeEEEEeecccccchhHH-HHHHHHhhh----ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeCCC
Confidence            3445555555544332222 233334333    457899999999987532221  111222222222  3789999999


Q ss_pred             CCChhHHhhhhcc
Q psy785           99 KVNSWLCVECTND  111 (112)
Q Consensus        99 ~~~v~~~~~~l~~  111 (112)
                      |.|++++++.|.+
T Consensus       173 g~Gid~L~~~i~~  185 (188)
T d1puia_         173 KQGVDKLRQKLDT  185 (188)
T ss_dssp             TBSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            9999999998753

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=3.8e-06  Score=54.62  Aligned_cols=102  Identities=13%  Similarity=0.062  Sum_probs=58.0

Q ss_pred             ceEEeCCCcccchh-----hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc----
Q psy785            2 LEILDTAGTEQFTA-----MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE----   72 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~-----~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~----   72 (112)
                      +.+|||||......     +.......+|.++++.|..-.+.-.   .+...+.+    .++|+++|.||+|....    
T Consensus       109 ~~l~DtPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~d~---~l~~~l~~----~~k~~~~V~nK~D~~~~~~~~  181 (400)
T d1tq4a_         109 VVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDI---DIAKAISM----MKKEFYFVRTKVDSDITNEAD  181 (400)
T ss_dssp             EEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHH---HHHHHHHH----TTCEEEEEECCHHHHHHHHHT
T ss_pred             EEEEeCCCcccccccHHHHHHHhhhhcceEEEEecCCCCCHHHH---HHHHHHHH----cCCCEEEEEeCcccccchhhh
Confidence            67999999664322     2223356789998888754322221   23334444    46899999999995310    


Q ss_pred             ---ccccH----HHHHHHH----HHhCC---cEEEeecCC--CCChhHHhhhhc
Q psy785           73 ---RVVGK----EQGASLA----RAFAC---TFLETSAKA--KVNSWLCVECTN  110 (112)
Q Consensus        73 ---~~~~~----~~~~~~~----~~~~~---~~~~~Sa~~--~~~v~~~~~~l~  110 (112)
                         .....    +..++.+    ...+.   +++.+|+.+  .+++.++.+.+.
T Consensus       182 ~~~~~~~~e~~l~~ir~~~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~  235 (400)
T d1tq4a_         182 GEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI  235 (400)
T ss_dssp             TCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEecCCcccccCHHHHHHHHH
Confidence               11111    1222222    22233   678888765  457777777654

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.01  E-value=1.3e-05  Score=50.73  Aligned_cols=80  Identities=10%  Similarity=0.054  Sum_probs=49.5

Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHH----------hCCcE
Q psy785           22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARA----------FACTF   91 (112)
Q Consensus        22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----------~~~~~   91 (112)
                      ..+|..++|..+...+..+.+   +..+.      .++=++|.||+|+.+...........+...          ...++
T Consensus       163 ~~~D~~v~v~~p~~GD~iQ~~---k~gil------E~aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V  233 (323)
T d2qm8a1         163 DLTDFFLVLMLPGAGDELQGI---KKGIF------ELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPV  233 (323)
T ss_dssp             TTSSEEEEEECSCC------C---CTTHH------HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCE
T ss_pred             cccceEEEEeeccchhhhhhh---hhhHh------hhhheeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCce
Confidence            458999999998876544322   12222      246689999999865333222222222222          23489


Q ss_pred             EEeecCCCCChhHHhhhhc
Q psy785           92 LETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        92 ~~~Sa~~~~~v~~~~~~l~  110 (112)
                      +.+||++|.|++++.+.+.
T Consensus       234 ~~~Sa~~g~Gi~el~~~I~  252 (323)
T d2qm8a1         234 VTISGLHGKGLDSLWSRIE  252 (323)
T ss_dssp             EEEBTTTTBSHHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHH
Confidence            9999999999999998874

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=1.1e-05  Score=51.10  Aligned_cols=82  Identities=16%  Similarity=0.073  Sum_probs=47.4

Q ss_pred             hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc--HHHHHHHHHH-------hCCc
Q psy785           20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG--KEQGASLARA-------FACT   90 (112)
Q Consensus        20 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~-------~~~~   90 (112)
                      ....+|.+++|.++...+..+.   ....+.+      ++-++|+||+|........  ..........       +..+
T Consensus       164 i~~~aD~~l~v~~P~~Gd~iq~---~k~gi~e------~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~  234 (327)
T d2p67a1         164 VARMVDCFISLQIAGGGDDLQG---IKKGLME------VADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPR  234 (327)
T ss_dssp             HHTTCSEEEEEECC------CC---CCHHHHH------HCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCE
T ss_pred             hhhccceEEEEecCCCchhhhh---hchhhhc------cccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcce
Confidence            3457899999988755443332   2223333      3558889999986422211  1111111111       1247


Q ss_pred             EEEeecCCCCChhHHhhhhc
Q psy785           91 FLETSAKAKVNSWLCVECTN  110 (112)
Q Consensus        91 ~~~~Sa~~~~~v~~~~~~l~  110 (112)
                      ++.|||++|.|++++.+.+.
T Consensus       235 V~~~SA~~g~Gi~eL~~~I~  254 (327)
T d2p67a1         235 VLTCSALEKRGIDEIWHAII  254 (327)
T ss_dssp             EEECBGGGTBSHHHHHHHHH
T ss_pred             eEEEEeeCCCCHHHHHHHHH
Confidence            99999999999999998774

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.52  E-value=0.0002  Score=43.61  Aligned_cols=72  Identities=14%  Similarity=0.008  Sum_probs=39.5

Q ss_pred             ceEEeCCCcccch-------hhHHh--hcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCCCC
Q psy785            2 LEILDTAGTEQFT-------AMRDL--YMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDT-DDVPMVLVGNKCDLE   70 (112)
Q Consensus         2 ~~i~Dt~g~~~~~-------~~~~~--~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~~   70 (112)
                      +.++||||..+..       .....  ...+.+++++|++.+... +-+. ...+..+....+. ...++++|.||.|..
T Consensus        82 i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~-~~~l~~l~~~fg~~~~~~~ivv~t~~D~~  160 (257)
T d1h65a_          82 LNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLD-KLVAKAITDSFGKGIWNKAIVALTHAQFS  160 (257)
T ss_dssp             EEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHH-HHHHHHHHHHHCGGGGGGEEEEEECCSCC
T ss_pred             EEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHH-HHHHHHHHHHcchhhhhCEEEEEECcccC
Confidence            6899999954321       11111  234678999998876532 1111 1122222222211 235789999999987


Q ss_pred             Cccc
Q psy785           71 EERV   74 (112)
Q Consensus        71 ~~~~   74 (112)
                      +...
T Consensus       161 ~~~~  164 (257)
T d1h65a_         161 PPDG  164 (257)
T ss_dssp             CGGG
T ss_pred             CcCC
Confidence            5443

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.34  E-value=0.0004  Score=42.85  Aligned_cols=67  Identities=19%  Similarity=0.250  Sum_probs=41.7

Q ss_pred             ceEEeCCCccc-------------chhhHHhhcccCCEEEE-EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCC
Q psy785            2 LEILDTAGTEQ-------------FTAMRDLYMKNGQGFIL-VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKC   67 (112)
Q Consensus         2 ~~i~Dt~g~~~-------------~~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~   67 (112)
                      +.++||||...             ...+...|+.+++.+++ +.+.+...+-.....+...+.    ....++++|.||+
T Consensus       127 l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~----~~~~r~i~Vltk~  202 (299)
T d2akab1         127 LTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGVITKL  202 (299)
T ss_dssp             EEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC----TTCSSEEEEEECG
T ss_pred             eeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhC----cCCCceeeEEecc
Confidence            57899999432             12456667778876554 555544433333344444432    2457899999999


Q ss_pred             CCCCc
Q psy785           68 DLEEE   72 (112)
Q Consensus        68 D~~~~   72 (112)
                      |...+
T Consensus       203 D~~~~  207 (299)
T d2akab1         203 DLMDE  207 (299)
T ss_dssp             GGSCT
T ss_pred             ccccc
Confidence            98654

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.34  E-value=0.0028  Score=38.70  Aligned_cols=42  Identities=12%  Similarity=0.002  Sum_probs=27.7

Q ss_pred             CCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecC
Q psy785           56 DDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK   97 (112)
Q Consensus        56 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~   97 (112)
                      ..+|++.++|..+.........+....++...+..++.+||+
T Consensus       198 t~KP~i~v~Nv~E~~~~~~~~~~~l~~~~~~~~~~vI~isa~  239 (278)
T d1jala1         198 TLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA  239 (278)
T ss_dssp             TTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred             hcchhhhhhccccccccccHHHHHHHHHHHhcCCeEEEeEHH
Confidence            458999999965432212112345566777778899999985

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.29  E-value=0.00044  Score=42.83  Aligned_cols=67  Identities=21%  Similarity=0.309  Sum_probs=41.5

Q ss_pred             ceEEeCCCccc-------------chhhHHhhcccCCEEEEEEeC-CChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCC
Q psy785            2 LEILDTAGTEQ-------------FTAMRDLYMKNGQGFILVYSI-TAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKC   67 (112)
Q Consensus         2 ~~i~Dt~g~~~-------------~~~~~~~~~~~~d~~i~v~d~-~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~   67 (112)
                      +.++||||...             ...++..|+.+++.+++++.. +....-.....+...+    .....++++|.||+
T Consensus       133 l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~----~~~~~r~i~Vitk~  208 (306)
T d1jwyb_         133 LTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV----DPEGKRTIGVITKL  208 (306)
T ss_dssp             EEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH----CSSCSSEEEEEECT
T ss_pred             ceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHh----CcCCCeEEEEEecc
Confidence            67999999532             235677788999987777643 3222212222333333    22456899999999


Q ss_pred             CCCCc
Q psy785           68 DLEEE   72 (112)
Q Consensus        68 D~~~~   72 (112)
                      |...+
T Consensus       209 D~~~~  213 (306)
T d1jwyb_         209 DLMDK  213 (306)
T ss_dssp             TSSCS
T ss_pred             ccccc
Confidence            98643

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.68  E-value=0.0073  Score=37.17  Aligned_cols=34  Identities=15%  Similarity=0.032  Sum_probs=24.7

Q ss_pred             ceEEeCCCcccc-------hhhHHhhcccCCEEEEEEeCCC
Q psy785            2 LEILDTAGTEQF-------TAMRDLYMKNGQGFILVYSITA   35 (112)
Q Consensus         2 ~~i~Dt~g~~~~-------~~~~~~~~~~~d~~i~v~d~~~   35 (112)
                      +++.|.||...-       .......+++||++++|+|+.+
T Consensus        77 i~~~DvaGLv~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          77 LTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             EEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ceeeeccccccccccccccHHHHHHHhhccceeEEEEeccC
Confidence            578999984432       1234456889999999998755

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=93.20  E-value=0.4  Score=27.91  Aligned_cols=89  Identities=15%  Similarity=0.063  Sum_probs=49.8

Q ss_pred             ceEEeCCCcccchh-hH---Hhh---cc-----cCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785            2 LEILDTAGTEQFTA-MR---DLY---MK-----NGQGFILVYSITAQ-STFNDLSDLREQILRVKDTDDVPMVLVGNKCD   68 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~-~~---~~~---~~-----~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D   68 (112)
                      +-|+||||...+.. +.   ..+   ..     ..+-.++|+|.+.. +....+...+   ..    -+ +-=++.+|.|
T Consensus        96 ~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~---~~----~~-~~~lI~TKlD  167 (213)
T d1vmaa2          96 VVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFK---EA----VN-VTGIILTKLD  167 (213)
T ss_dssp             EEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHH---HH----SC-CCEEEEECGG
T ss_pred             EEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhc---cc----cC-CceEEEeccc
Confidence            46899999544322 11   111   11     14678899998654 2333332222   21    12 3345689999


Q ss_pred             CCCcccccHHHHHHHHHHhCCcEEEeecCCCCChhH
Q psy785           69 LEEERVVGKEQGASLARAFACTFLETSAKAKVNSWL  104 (112)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  104 (112)
                      -....    -.+...+...+.|+.+++  +|+++++
T Consensus       168 e~~~~----G~~l~~~~~~~~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         168 GTAKG----GITLAIARELGIPIKFIG--VGEKAED  197 (213)
T ss_dssp             GCSCT----THHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CCCcc----cHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            64322    233456677789988887  4666644

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.01  E-value=0.4  Score=27.46  Aligned_cols=63  Identities=16%  Similarity=0.162  Sum_probs=41.8

Q ss_pred             ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEeeCCCCCC
Q psy785            2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV-LVGNKCDLEE   71 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~~~   71 (112)
                      +-++|+++...  ......+..+|.++++...+ ..++.........+.+    .+.|+. ++.||.+..+
T Consensus       114 ~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~----~~~~~~giv~N~~~~~~  177 (237)
T d1g3qa_         114 FILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK----AGLAILGFVLNRYGRSD  177 (237)
T ss_dssp             EEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH----TTCEEEEEEEEEETSCT
T ss_pred             EEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhh----hhhhhhhhhhccccccc
Confidence            45789987543  23344466799999999864 5566666555555544    456655 7889998654

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=92.86  E-value=0.45  Score=27.62  Aligned_cols=89  Identities=15%  Similarity=0.060  Sum_probs=51.1

Q ss_pred             ceEEeCCCcccchh--h----HHhh--cccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785            2 LEILDTAGTEQFTA--M----RDLY--MKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE   72 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~--~----~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~   72 (112)
                      +-++||||...+..  .    ....  .-+.+-+++|++.+... ..+.....+   ..    .++ -=++.+|.|... 
T Consensus        97 ~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~---~~----~~~-~~lI~TKlDet~-  167 (211)
T d1j8yf2          97 IIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFN---QA----SKI-GTIIITKMDGTA-  167 (211)
T ss_dssp             EEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHH---HH----CTT-EEEEEECTTSCS-
T ss_pred             eEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhh---cc----cCc-ceEEEecccCCC-
Confidence            46899999643321  1    1111  22467888888886543 333322221   11    222 335699999643 


Q ss_pred             ccccHHHHHHHHHHhCCcEEEeecCCCCChhH
Q psy785           73 RVVGKEQGASLARAFACTFLETSAKAKVNSWL  104 (112)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  104 (112)
                         ..-.+...+.+.++|+..+|  +|++|++
T Consensus       168 ---~~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         168 ---KGGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             ---CHHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ---cccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence               23445567777899988888  4666654

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=92.71  E-value=0.47  Score=27.45  Aligned_cols=88  Identities=13%  Similarity=0.063  Sum_probs=49.6

Q ss_pred             ceEEeCCCcccchh----hHHhh---c-----ccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785            2 LEILDTAGTEQFTA----MRDLY---M-----KNGQGFILVYSITAQ-STFNDLSDLREQILRVKDTDDVPMVLVGNKCD   68 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~----~~~~~---~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D   68 (112)
                      +-|+||||...+..    ....+   .     ...+-.++|+|.+.. +....+...+..+       + +-=++.+|.|
T Consensus        91 ~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~-~~~lI~TKlD  162 (207)
T d1okkd2          91 LLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV-------G-LTGVIVTKLD  162 (207)
T ss_dssp             EEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH-------C-CSEEEEECTT
T ss_pred             EEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc-------C-CceEEEeccC
Confidence            46899999554321    11111   1     245778889988654 3444444433332       1 2345699999


Q ss_pred             CCCcccccHHHHHHHHHHhCCcEEEeecCCCCChh
Q psy785           69 LEEERVVGKEQGASLARAFACTFLETSAKAKVNSW  103 (112)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  103 (112)
                      -.....    .+.......+.|+.++|.  |++.+
T Consensus       163 et~~~G----~~l~~~~~~~~Pi~~i~~--Gq~p~  191 (207)
T d1okkd2         163 GTAKGG----VLIPIVRTLKVPIKFVGV--GEGPD  191 (207)
T ss_dssp             SSCCCT----THHHHHHHHCCCEEEEEC--SSSTT
T ss_pred             CCCCcc----HHHHHHHHHCCCEEEEeC--CCChH
Confidence            653222    224556677899887774  44443

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=92.52  E-value=0.51  Score=27.40  Aligned_cols=89  Identities=17%  Similarity=0.043  Sum_probs=50.4

Q ss_pred             ceEEeCCCcccchh----hHHhh---cc-----cCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785            2 LEILDTAGTEQFTA----MRDLY---MK-----NGQGFILVYSITAQ-STFNDLSDLREQILRVKDTDDVPMVLVGNKCD   68 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~----~~~~~---~~-----~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D   68 (112)
                      +-|+||||.-....    ....+   .+     ..+-.++|.|.+.. +........+..+       + +-=++.+|.|
T Consensus        94 ~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~-~~~lIlTKlD  165 (211)
T d2qy9a2          94 VLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV-------G-LTGITLTKLD  165 (211)
T ss_dssp             EEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS-------C-CCEEEEECCT
T ss_pred             EEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc-------C-CceEEEeecC
Confidence            46899999543321    11111   21     25688899998653 3344333322221       2 3345689999


Q ss_pred             CCCcccccHHHHHHHHHHhCCcEEEeecCCCCChhH
Q psy785           69 LEEERVVGKEQGASLARAFACTFLETSAKAKVNSWL  104 (112)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  104 (112)
                      -....    -.+...+...+.|+.+++  +|++|++
T Consensus       166 e~~~~----G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         166 GTAKG----GVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             TCTTT----THHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CCCCc----cHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            75322    233456677899988888  5666644

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.36  E-value=1  Score=26.79  Aligned_cols=87  Identities=15%  Similarity=0.185  Sum_probs=47.1

Q ss_pred             ceEEeCCCcccchhhHHh-hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcE-EEEeeCCCCCCcccccHHH
Q psy785            2 LEILDTAGTEQFTAMRDL-YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM-VLVGNKCDLEEERVVGKEQ   79 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~~~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~nK~D~~~~~~~~~~~   79 (112)
                      +-++|||+.......... ....++.++++... +..++..+......+.+.....+.++ -++.|+.+....    .+.
T Consensus       121 ~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~-~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~~----~~~  195 (289)
T d2afhe1         121 FVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG-EMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDRE----DEL  195 (289)
T ss_dssp             EEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS-SHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTH----HHH
T ss_pred             eEeeccCCccCHHHHHHHHHhhccceeecccch-hHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchhh----HHH
Confidence            357888865432221111 22356766666554 45566665555555554433344444 367898875321    334


Q ss_pred             HHHHHHHhCCcEEE
Q psy785           80 GASLARAFACTFLE   93 (112)
Q Consensus        80 ~~~~~~~~~~~~~~   93 (112)
                      ..++++.++.+++.
T Consensus       196 ~~~~~~~~g~~vl~  209 (289)
T d2afhe1         196 IIALANKLGTQMIH  209 (289)
T ss_dssp             HHHHHHHHTSCEEE
T ss_pred             HHHHHHHcCCeEEE
Confidence            55666777776654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=90.17  E-value=0.96  Score=26.07  Aligned_cols=83  Identities=16%  Similarity=0.076  Sum_probs=46.9

Q ss_pred             ceEEeCCCcccchh-hHH---hh--cccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc
Q psy785            2 LEILDTAGTEQFTA-MRD---LY--MKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV   74 (112)
Q Consensus         2 ~~i~Dt~g~~~~~~-~~~---~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~   74 (112)
                      +-++||+|...+.. ...   .+  ..+.+-+++|.|.+... ..+....+    .+..   + +-=++.+|.|-...  
T Consensus        95 ~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f----~~~~---~-~~~~I~TKlDe~~~--  164 (207)
T d1ls1a2          95 LILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAF----DEKV---G-VTGLVLTKLDGDAR--  164 (207)
T ss_dssp             EEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHH----HHHT---C-CCEEEEECGGGCSS--
T ss_pred             ceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHH----HhhC---C-CCeeEEeecCcccc--
Confidence            46899999654322 111   11  33678889999986653 33332222    2211   1 22366899996432  


Q ss_pred             ccHHHHHHHHHHhCCcEEEeec
Q psy785           75 VGKEQGASLARAFACTFLETSA   96 (112)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~Sa   96 (112)
                        .-.+...+...+.|+.+++.
T Consensus       165 --~G~~l~~~~~~~~Pi~~i~~  184 (207)
T d1ls1a2         165 --GGAALSARHVTGKPIYFAGV  184 (207)
T ss_dssp             --CHHHHHHHHHHCCCEEEEC-
T ss_pred             --chHHHHHHHHHCCCEEEEeC
Confidence              23345667778888877753

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=89.80  E-value=0.16  Score=31.07  Aligned_cols=40  Identities=25%  Similarity=0.277  Sum_probs=25.2

Q ss_pred             CCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCC
Q psy785           57 DVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKA   98 (112)
Q Consensus        57 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~   98 (112)
                      .+|++.++||.|......  .+...+.+...+..++++||..
T Consensus       214 ~kP~~~v~Nk~d~~~~e~--~~~~~~~~~~~~~~vi~~sa~~  253 (319)
T d1wxqa1         214 NKPMVIAANKADAASDEQ--IKRLVREEEKRGYIVIPTSAAA  253 (319)
T ss_dssp             HSCEEEEEECGGGSCHHH--HHHHHHHHHHTTCEEEEECHHH
T ss_pred             cCchhhhcccccchhhHH--HHHHHHHHhhcCCEEEEecHHH
Confidence            378999999998643221  2333344455667777777764

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.54  E-value=1.1  Score=25.88  Aligned_cols=72  Identities=13%  Similarity=0.069  Sum_probs=39.4

Q ss_pred             cCCEEEEEEeCCChhhH-HHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhC--CcEEEeecCCC
Q psy785           23 NGQGFILVYSITAQSTF-NDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFA--CTFLETSAKAK   99 (112)
Q Consensus        23 ~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~   99 (112)
                      ..++++.++|....... .....+...+.       .-=+++.||+|+.++.    +..++..+..+  .+++++| .-.
T Consensus       121 ~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~-------~AD~ivlNK~Dl~~~~----~~~~~~l~~lNP~a~Ii~~~-~g~  188 (222)
T d1nija1         121 LLDGVIALVDAVHADEQMNQFTIAQSQVG-------YADRILLTKTDVAGEA----EKLHERLARINARAPVYTVT-HGD  188 (222)
T ss_dssp             EEEEEEEEEETTTHHHHHHHCHHHHHHHH-------TCSEEEEECTTTCSCT----HHHHHHHHHHCSSSCEEECC-SSC
T ss_pred             cccchhhhhhhhhhhhhhhhhHHHHHHHH-------hCCcccccccccccHH----HHHHHHHHHHhCCCeEEEee-CCc
Confidence            35889999998775422 11111222222       1336789999987532    34455555554  3677644 223


Q ss_pred             CChhHHh
Q psy785          100 VNSWLCV  106 (112)
Q Consensus       100 ~~v~~~~  106 (112)
                      ..+..+|
T Consensus       189 v~~~~ll  195 (222)
T d1nija1         189 IDLGLLF  195 (222)
T ss_dssp             CCGGGGS
T ss_pred             cCHHHhh
Confidence            4555444

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=85.29  E-value=1.9  Score=23.85  Aligned_cols=55  Identities=18%  Similarity=0.276  Sum_probs=37.1

Q ss_pred             CChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEee
Q psy785           34 TAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETS   95 (112)
Q Consensus        34 ~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S   95 (112)
                      +++.+++..   +.++.+.......|+|++|.......    ..+++.++++..+++++.+-
T Consensus         3 sd~~~l~~~---v~~~~~~l~~AkrPvIi~G~g~~~~~----a~~~l~~lae~~~~Pv~tt~   57 (175)
T d1zpda1           3 SDEASLNAA---VDETLKFIANRDKVAVLVGSKLRAAG----AEEAAVKFTDALGGAVATMA   57 (175)
T ss_dssp             CCHHHHHHH---HHHHHHHHTTCSCEEEEECTTTTTTT----CHHHHHHHHHHHCCCEEEEG
T ss_pred             CChHHHHHH---HHHHHHHHHcCCCEEEEECcCccccc----hHHHHHHHHHhhceeEEecc
Confidence            455555543   23333333446789999999987532    36778899999999988554

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=82.60  E-value=3.1  Score=24.27  Aligned_cols=87  Identities=13%  Similarity=0.141  Sum_probs=50.4

Q ss_pred             ceEEeCCCcccc-hhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcE-EEEeeCCCCCCcccccHHH
Q psy785            2 LEILDTAGTEQF-TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM-VLVGNKCDLEEERVVGKEQ   79 (112)
Q Consensus         2 ~~i~Dt~g~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~nK~D~~~~~~~~~~~   79 (112)
                      +-+.|||+.-.. ..........||.++++.+. +..++.........+.......+.++ -++.|+.+....    .+.
T Consensus       118 ~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~----~~~  192 (269)
T d1cp2a_         118 YVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANE----YEL  192 (269)
T ss_dssp             EEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCC----HHH
T ss_pred             EEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCc----cch
Confidence            457899864432 22222333567888887776 45666666565555555443333332 367899876532    344


Q ss_pred             HHHHHHHhCCcEEE
Q psy785           80 GASLARAFACTFLE   93 (112)
Q Consensus        80 ~~~~~~~~~~~~~~   93 (112)
                      .+++++..+.+++.
T Consensus       193 ~~~~~~~~~~~~~~  206 (269)
T d1cp2a_         193 LDAFAKELGSQLIH  206 (269)
T ss_dssp             HHHHHHHHTCCEEE
T ss_pred             hhhhHhhcCCeEEE
Confidence            55667777776553